Query 002041
Match_columns 976
No_of_seqs 200 out of 1514
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 15:10:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002041.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002041hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2022 Nuclear transport rece 100.0 1.3E-95 3E-100 805.2 81.0 896 1-954 1-977 (982)
2 KOG2021 Nuclear mRNA export fa 100.0 3.9E-69 8.4E-74 582.9 61.1 881 4-950 2-975 (980)
3 KOG2081 Nuclear transport regu 100.0 1.9E-64 4.2E-69 539.2 47.9 550 24-630 2-557 (559)
4 COG5101 CRM1 Importin beta-rel 100.0 5.8E-53 1.2E-57 448.0 64.8 913 4-953 13-1030(1053)
5 KOG2023 Nuclear transport rece 100.0 8.4E-45 1.8E-49 389.5 41.7 762 6-931 14-815 (885)
6 KOG2171 Karyopherin (importin) 100.0 1.6E-35 3.5E-40 341.1 66.8 600 4-732 3-619 (1075)
7 KOG1991 Nuclear transport rece 100.0 2.5E-30 5.4E-35 292.4 65.6 803 6-902 5-880 (1010)
8 KOG2020 Nuclear transport rece 100.0 1.9E-28 4.2E-33 289.4 61.7 899 4-947 9-1005(1041)
9 KOG1241 Karyopherin (importin) 100.0 1.7E-27 3.8E-32 261.5 56.9 655 17-797 12-711 (859)
10 COG5215 KAP95 Karyopherin (imp 99.9 1.1E-19 2.3E-24 193.6 58.2 649 17-797 16-711 (858)
11 KOG1992 Nuclear export recepto 99.9 3.3E-19 7.1E-24 198.2 55.0 726 2-839 2-792 (960)
12 COG5656 SXM1 Importin, protein 99.9 5.3E-17 1.1E-21 178.5 61.5 628 17-728 14-690 (970)
13 KOG1410 Nuclear transport rece 99.9 2.3E-14 4.9E-19 155.8 67.7 784 1-840 1-937 (1082)
14 KOG2274 Predicted importin 9 [ 99.7 3.6E-13 7.7E-18 152.3 49.0 146 5-156 4-160 (1005)
15 PF08389 Xpo1: Exportin 1-like 99.7 1E-16 2.2E-21 155.5 11.1 141 98-243 1-148 (148)
16 KOG1993 Nuclear transport rece 99.7 3.4E-12 7.4E-17 142.3 47.0 169 7-188 2-180 (978)
17 PF08767 CRM1_C: CRM1 C termin 99.5 8.8E-13 1.9E-17 142.5 21.4 229 713-953 65-316 (319)
18 COG5657 CSE1 CAS/CSE protein i 99.4 7.7E-09 1.7E-13 118.4 42.9 144 1-151 1-150 (947)
19 KOG2171 Karyopherin (importin) 99.4 3.1E-06 6.7E-11 100.5 64.6 331 464-811 400-776 (1075)
20 KOG1241 Karyopherin (importin) 99.1 3.3E-05 7.1E-10 87.6 51.4 392 372-817 399-835 (859)
21 KOG1824 TATA-binding protein-i 99.0 0.00017 3.7E-09 83.5 50.0 602 52-764 17-656 (1233)
22 PF03810 IBN_N: Importin-beta 98.9 2.9E-09 6.3E-14 89.8 7.5 67 26-92 1-76 (77)
23 KOG2023 Nuclear transport rece 98.9 1.1E-05 2.3E-10 89.8 35.8 344 475-841 456-818 (885)
24 PF08506 Cse1: Cse1; InterPro 98.5 3.6E-05 7.8E-10 84.9 24.0 207 317-558 142-370 (370)
25 KOG0915 Uncharacterized conser 98.1 0.057 1.2E-06 66.9 42.4 180 370-585 989-1182(1702)
26 COG5215 KAP95 Karyopherin (imp 98.1 0.0022 4.7E-08 70.8 27.3 378 490-908 321-725 (858)
27 KOG4541 Nuclear transport rece 98.1 0.0021 4.6E-08 70.5 26.1 401 533-953 297-743 (748)
28 KOG0213 Splicing factor 3b, su 97.6 0.24 5.1E-06 57.0 40.6 364 429-840 736-1142(1172)
29 KOG1824 TATA-binding protein-i 97.6 0.31 6.7E-06 57.8 59.3 163 465-635 491-664 (1233)
30 PF01602 Adaptin_N: Adaptin N 97.6 0.34 7.3E-06 57.6 37.1 454 16-605 52-520 (526)
31 PF03378 CAS_CSE1: CAS/CSE pro 97.5 0.0039 8.4E-08 70.5 18.2 213 566-842 17-231 (435)
32 KOG1242 Protein containing ada 97.5 0.0045 9.7E-08 69.9 17.9 172 429-614 239-449 (569)
33 PF01602 Adaptin_N: Adaptin N 97.1 1 2.3E-05 53.4 33.1 202 465-708 91-297 (526)
34 KOG0212 Uncharacterized conser 96.9 0.62 1.3E-05 52.3 26.2 328 532-891 81-461 (675)
35 KOG0915 Uncharacterized conser 96.8 2.4 5.3E-05 53.4 33.7 98 463-564 967-1069(1702)
36 KOG1991 Nuclear transport rece 96.0 5.2 0.00011 48.4 62.3 397 194-639 105-560 (1010)
37 PTZ00429 beta-adaptin; Provisi 96.0 5.9 0.00013 48.3 42.8 127 16-154 78-209 (746)
38 KOG1248 Uncharacterized conser 95.7 8.3 0.00018 47.8 59.1 184 693-899 712-903 (1176)
39 PF10508 Proteasom_PSMB: Prote 95.6 6.7 0.00015 46.0 30.3 131 466-610 51-190 (503)
40 KOG1992 Nuclear export recepto 95.4 8.2 0.00018 45.8 46.3 122 826-949 654-789 (960)
41 PF12755 Vac14_Fab1_bd: Vacuol 95.3 0.058 1.3E-06 47.0 6.8 75 509-585 3-78 (97)
42 KOG1059 Vesicle coat complex A 95.3 8 0.00017 45.2 34.5 224 77-344 139-364 (877)
43 PLN03200 cellulose synthase-in 94.8 23 0.00051 47.8 57.2 388 466-905 459-871 (2102)
44 PF14500 MMS19_N: Dos2-interac 94.5 1.9 4.1E-05 45.5 16.9 224 505-750 12-242 (262)
45 smart00802 UME Domain in UVSB 94.3 0.53 1.1E-05 41.8 10.2 92 533-631 9-105 (107)
46 KOG1062 Vesicle coat complex A 94.1 17 0.00036 43.3 38.4 61 505-565 479-546 (866)
47 PTZ00429 beta-adaptin; Provisi 93.8 22 0.00047 43.5 34.5 90 504-606 152-245 (746)
48 KOG0212 Uncharacterized conser 93.6 16 0.00035 41.6 25.1 338 540-913 5-369 (675)
49 KOG2081 Nuclear transport regu 93.3 3 6.5E-05 47.3 16.1 280 678-969 114-414 (559)
50 PF12755 Vac14_Fab1_bd: Vacuol 92.9 0.22 4.8E-06 43.4 5.5 89 470-561 3-94 (97)
51 PF10508 Proteasom_PSMB: Prote 92.9 24 0.00052 41.4 30.4 338 429-801 58-424 (503)
52 PF12460 MMS19_C: RNAPII trans 92.9 21 0.00046 40.8 32.1 179 465-662 202-394 (415)
53 PF08767 CRM1_C: CRM1 C termin 92.9 8.6 0.00019 42.0 19.0 171 193-386 42-221 (319)
54 PF08064 UME: UME (NUC010) dom 92.9 1.3 2.8E-05 39.5 10.4 92 533-631 9-105 (107)
55 KOG0213 Splicing factor 3b, su 92.5 27 0.00058 41.2 31.9 218 505-751 489-716 (1172)
56 COG5064 SRP1 Karyopherin (impo 92.4 4.7 0.0001 42.6 15.0 175 465-663 128-315 (526)
57 PF13513 HEAT_EZ: HEAT-like re 92.4 0.12 2.7E-06 39.7 2.9 54 506-561 1-55 (55)
58 KOG2274 Predicted importin 9 [ 91.7 38 0.00083 41.0 24.2 173 655-841 510-690 (1005)
59 PF12348 CLASP_N: CLASP N term 91.6 2.1 4.6E-05 44.3 12.2 137 464-612 18-163 (228)
60 PF12460 MMS19_C: RNAPII trans 91.5 30 0.00065 39.5 32.5 74 784-870 339-412 (415)
61 cd00020 ARM Armadillo/beta-cat 91.1 0.5 1.1E-05 43.0 6.0 95 465-563 19-120 (120)
62 PF03378 CAS_CSE1: CAS/CSE pro 90.8 5.9 0.00013 45.1 15.3 286 532-840 23-324 (435)
63 PF13513 HEAT_EZ: HEAT-like re 89.4 0.15 3.2E-06 39.2 0.8 52 467-518 1-54 (55)
64 PF12348 CLASP_N: CLASP N term 89.3 14 0.0003 38.2 15.8 184 505-712 20-211 (228)
65 KOG1242 Protein containing ada 88.6 55 0.0012 38.1 28.9 360 505-928 69-439 (569)
66 PF02985 HEAT: HEAT repeat; I 88.2 0.55 1.2E-05 31.1 2.8 29 537-565 2-31 (31)
67 KOG0166 Karyopherin (importin) 87.6 22 0.00048 40.8 16.5 255 547-841 124-394 (514)
68 PRK09687 putative lyase; Provi 87.3 45 0.00098 35.7 19.2 137 439-607 49-186 (280)
69 KOG1059 Vesicle coat complex A 86.9 74 0.0016 37.7 20.6 95 476-578 129-225 (877)
70 PF08167 RIX1: rRNA processing 86.7 8.6 0.00019 37.5 11.3 132 445-583 22-163 (165)
71 PLN03200 cellulose synthase-in 85.0 1.7E+02 0.0037 40.1 52.6 212 464-708 541-765 (2102)
72 PF12717 Cnd1: non-SMC mitotic 83.9 22 0.00048 35.1 13.0 145 474-628 9-156 (178)
73 PRK09687 putative lyase; Provi 83.5 68 0.0015 34.3 18.8 212 8-247 26-249 (280)
74 PF05918 API5: Apoptosis inhib 82.8 1E+02 0.0023 36.1 20.5 17 690-706 145-161 (556)
75 KOG1058 Vesicle coat complex C 82.8 1.1E+02 0.0025 36.5 22.4 163 315-546 316-481 (948)
76 PF10274 ParcG: Parkin co-regu 82.3 12 0.00025 36.8 9.8 89 534-627 37-129 (183)
77 KOG1993 Nuclear transport rece 81.9 1.1E+02 0.0023 36.9 18.7 70 651-722 590-662 (978)
78 KOG2213 Apoptosis inhibitor 5/ 81.2 90 0.002 34.2 21.0 231 509-765 41-285 (460)
79 PF12719 Cnd3: Nuclear condens 80.1 93 0.002 33.7 18.0 128 473-610 3-144 (298)
80 KOG2022 Nuclear transport rece 79.4 1.6E+02 0.0035 36.0 31.8 145 545-710 476-622 (982)
81 PF11864 DUF3384: Domain of un 78.9 94 0.002 36.1 17.8 169 672-843 24-209 (464)
82 KOG2956 CLIP-associating prote 77.2 1.3E+02 0.0029 33.9 16.7 173 515-721 316-492 (516)
83 COG5064 SRP1 Karyopherin (impo 75.9 8.8 0.00019 40.7 7.2 95 468-565 172-274 (526)
84 PF13646 HEAT_2: HEAT repeats; 75.2 23 0.0005 29.8 8.9 87 8-110 2-88 (88)
85 KOG2753 Uncharacterized conser 74.9 80 0.0017 33.8 13.7 87 532-625 104-193 (378)
86 KOG1943 Beta-tubulin folding c 74.6 2.4E+02 0.0051 35.5 33.0 243 492-746 339-613 (1133)
87 KOG2021 Nuclear mRNA export fa 74.1 2E+02 0.0044 34.5 25.5 83 548-639 711-793 (980)
88 PF04826 Arm_2: Armadillo-like 73.9 1.2E+02 0.0026 31.8 17.5 133 465-610 25-164 (254)
89 PF08167 RIX1: rRNA processing 73.9 23 0.00049 34.5 9.3 128 761-905 23-154 (165)
90 COG5181 HSH155 U2 snRNP splice 72.6 2E+02 0.0043 33.7 26.9 183 429-633 301-493 (975)
91 PF08623 TIP120: TATA-binding 72.4 20 0.00043 34.8 8.2 77 506-586 41-117 (169)
92 PF12717 Cnd1: non-SMC mitotic 71.8 38 0.00083 33.4 10.6 54 505-564 1-55 (178)
93 PF13646 HEAT_2: HEAT repeats; 71.3 12 0.00026 31.6 6.1 56 7-64 32-87 (88)
94 KOG4653 Uncharacterized conser 70.7 2.5E+02 0.0055 34.3 17.9 129 474-612 786-921 (982)
95 KOG0166 Karyopherin (importin) 68.2 2.4E+02 0.0051 32.8 25.3 337 469-840 127-486 (514)
96 PF05918 API5: Apoptosis inhib 67.4 2.6E+02 0.0056 32.9 22.5 35 675-709 218-256 (556)
97 KOG1967 DNA repair/transcripti 67.2 44 0.00094 40.7 11.0 166 540-725 820-1001(1030)
98 COG5101 CRM1 Importin beta-rel 66.4 1.7E+02 0.0037 34.3 14.8 164 674-840 190-371 (1053)
99 KOG1062 Vesicle coat complex A 66.0 3.1E+02 0.0067 33.3 34.0 142 476-627 127-279 (866)
100 COG5656 SXM1 Importin, protein 65.5 3E+02 0.0066 33.1 49.4 118 505-636 429-552 (970)
101 COG5181 HSH155 U2 snRNP splice 65.0 2.8E+02 0.0061 32.5 36.3 96 488-585 598-698 (975)
102 KOG1061 Vesicle coat complex A 64.7 1.2E+02 0.0027 36.3 14.0 102 675-787 404-518 (734)
103 KOG2256 Predicted protein invo 64.7 3E+02 0.0064 32.6 21.1 216 505-732 255-482 (661)
104 KOG0168 Putative ubiquitin fus 63.7 3.5E+02 0.0076 33.1 19.7 134 549-709 227-366 (1051)
105 PF11865 DUF3385: Domain of un 62.6 78 0.0017 30.6 10.3 70 535-609 86-157 (160)
106 PF13251 DUF4042: Domain of un 59.9 1.9E+02 0.004 28.7 12.8 106 544-663 49-175 (182)
107 KOG4224 Armadillo repeat prote 57.5 1.3E+02 0.0029 32.6 11.4 45 5-49 250-303 (550)
108 PF10363 DUF2435: Protein of u 57.4 91 0.002 26.9 8.7 74 544-623 12-86 (92)
109 PF01603 B56: Protein phosphat 56.5 1.7E+02 0.0038 33.2 13.4 48 855-902 327-378 (409)
110 PF14500 MMS19_N: Dos2-interac 56.0 2.7E+02 0.0059 29.4 20.3 230 464-724 10-255 (262)
111 PF11229 DUF3028: Protein of u 55.9 3.7E+02 0.008 30.9 18.6 192 489-710 149-349 (589)
112 PF04388 Hamartin: Hamartin pr 54.0 2.3E+02 0.0049 34.6 14.5 113 781-908 81-206 (668)
113 cd00020 ARM Armadillo/beta-cat 52.8 64 0.0014 28.7 7.8 97 10-112 11-118 (120)
114 PF08161 NUC173: NUC173 domain 52.3 2.6E+02 0.0056 28.1 14.9 63 551-618 17-79 (198)
115 KOG1020 Sister chromatid cohes 51.3 7.2E+02 0.016 32.9 26.3 83 532-622 813-896 (1692)
116 PF11865 DUF3385: Domain of un 48.4 2.6E+02 0.0056 27.0 13.3 37 573-614 8-44 (160)
117 KOG1240 Protein kinase contain 47.8 7.3E+02 0.016 32.0 19.1 276 20-350 437-730 (1431)
118 PF08064 UME: UME (NUC010) dom 46.6 2.1E+02 0.0046 25.4 12.1 99 620-727 5-104 (107)
119 KOG2160 Armadillo/beta-catenin 46.4 2.9E+02 0.0062 30.2 12.1 141 464-615 94-246 (342)
120 KOG1943 Beta-tubulin folding c 46.3 7.3E+02 0.016 31.5 25.1 131 469-611 444-613 (1133)
121 PF08506 Cse1: Cse1; InterPro 45.5 4.8E+02 0.01 29.2 23.4 125 695-826 228-361 (370)
122 PF12231 Rif1_N: Rap1-interact 45.2 4.9E+02 0.011 29.2 19.8 39 803-841 266-304 (372)
123 PF10274 ParcG: Parkin co-regu 43.9 3.3E+02 0.0072 26.9 11.5 81 596-687 54-135 (183)
124 KOG0168 Putative ubiquitin fus 43.2 7.3E+02 0.016 30.6 23.6 204 467-689 226-439 (1051)
125 KOG4524 Uncharacterized conser 42.8 7.8E+02 0.017 30.9 18.1 61 652-714 822-883 (1014)
126 PF12422 Condensin2nSMC: Conde 42.2 89 0.0019 29.9 7.0 29 868-896 36-64 (152)
127 PF02985 HEAT: HEAT repeat; I 41.8 36 0.00078 22.3 3.0 20 464-483 11-30 (31)
128 KOG1240 Protein kinase contain 41.7 9E+02 0.019 31.3 16.7 58 505-566 436-494 (1431)
129 cd08050 TAF6 TATA Binding Prot 39.6 3.6E+02 0.0078 29.8 12.2 129 447-585 177-319 (343)
130 PF14868 DUF4487: Domain of un 38.6 7.4E+02 0.016 29.4 19.8 46 591-636 423-470 (559)
131 KOG0946 ER-Golgi vesicle-tethe 37.6 8.5E+02 0.018 29.8 31.3 55 550-611 39-94 (970)
132 KOG2753 Uncharacterized conser 37.6 5.6E+02 0.012 27.7 14.4 64 592-669 58-121 (378)
133 KOG4653 Uncharacterized conser 37.6 8.8E+02 0.019 30.0 18.0 185 507-717 742-928 (982)
134 KOG1020 Sister chromatid cohes 35.9 1.2E+03 0.026 31.0 27.2 54 505-564 868-922 (1692)
135 smart00802 UME Domain in UVSB 35.6 3.2E+02 0.007 24.3 12.2 94 625-727 10-104 (107)
136 PF08389 Xpo1: Exportin 1-like 34.5 74 0.0016 29.8 5.3 120 694-815 4-134 (148)
137 cd03568 VHS_STAM VHS domain fa 34.4 4.1E+02 0.0088 25.1 10.4 74 535-613 37-114 (144)
138 PF14668 RICTOR_V: Rapamycin-i 34.2 48 0.001 27.2 3.2 52 469-521 3-58 (73)
139 COG5096 Vesicle coat complex, 33.3 8.7E+02 0.019 29.9 14.6 126 17-154 66-196 (757)
140 PF10441 Urb2: Urb2/Npa2 famil 33.2 5.5E+02 0.012 26.3 18.6 72 551-626 112-202 (223)
141 KOG1060 Vesicle coat complex A 32.9 1E+03 0.022 29.3 20.4 268 505-840 300-570 (968)
142 KOG2160 Armadillo/beta-catenin 31.6 5E+02 0.011 28.4 11.1 93 17-117 94-199 (342)
143 KOG0414 Chromosome condensatio 30.4 2.9E+02 0.0063 35.1 10.1 123 429-562 897-1026(1251)
144 KOG1525 Sister chromatid cohes 30.4 1.4E+03 0.03 30.2 24.2 209 672-906 41-263 (1266)
145 PF09184 PPP4R2: PPP4R2; Inte 29.3 4.3E+02 0.0093 28.4 10.2 105 4-111 2-109 (288)
146 KOG1077 Vesicle coat complex A 28.1 1.1E+03 0.025 28.4 31.5 130 464-605 438-583 (938)
147 KOG2956 CLIP-associating prote 28.0 9.6E+02 0.021 27.5 17.8 69 690-759 418-490 (516)
148 PF14676 FANCI_S2: FANCI solen 27.0 3.5E+02 0.0076 26.1 8.3 83 863-954 54-140 (158)
149 PF10441 Urb2: Urb2/Npa2 famil 26.8 7E+02 0.015 25.5 12.9 130 778-907 48-199 (223)
150 KOG2051 Nonsense-mediated mRNA 26.0 1.4E+03 0.029 29.2 14.4 100 465-585 657-757 (1128)
151 PF08569 Mo25: Mo25-like; Int 26.0 9.1E+02 0.02 26.6 12.3 141 691-841 89-239 (335)
152 PF10521 DUF2454: Protein of u 25.8 8E+02 0.017 26.2 11.8 53 532-584 116-175 (282)
153 cd00864 PI3Ka Phosphoinositide 25.6 4.7E+02 0.01 25.0 8.9 64 18-91 51-114 (152)
154 KOG0368 Acetyl-CoA carboxylase 25.5 1.7E+03 0.038 29.7 18.4 165 782-963 839-1012(2196)
155 PF11698 V-ATPase_H_C: V-ATPas 25.2 2.4E+02 0.0053 25.6 6.3 65 7-73 45-119 (119)
156 smart00638 LPD_N Lipoprotein N 25.1 1.2E+03 0.026 27.7 17.1 83 429-521 342-426 (574)
157 PF00514 Arm: Armadillo/beta-c 25.0 1.1E+02 0.0023 21.4 3.4 24 540-563 17-41 (41)
158 PF05804 KAP: Kinesin-associat 24.1 1.4E+03 0.03 28.1 19.0 101 596-707 504-607 (708)
159 KOG0889 Histone acetyltransfer 24.0 1.5E+03 0.032 33.2 15.6 171 563-750 621-797 (3550)
160 KOG1078 Vesicle coat complex C 23.8 6E+02 0.013 31.0 10.7 131 425-572 408-541 (865)
161 KOG4224 Armadillo repeat prote 23.7 2.1E+02 0.0045 31.2 6.4 88 491-580 209-301 (550)
162 KOG4820 Involved in anesthetic 23.5 1.9E+02 0.004 32.9 6.3 114 514-627 460-592 (933)
163 KOG1058 Vesicle coat complex C 22.7 1.5E+03 0.032 27.8 27.5 70 505-583 112-182 (948)
164 PF10363 DUF2435: Protein of u 21.6 5.3E+02 0.011 22.2 7.7 84 39-135 4-87 (92)
165 PF00790 VHS: VHS domain; Int 20.9 6.3E+02 0.014 23.6 8.7 76 532-611 39-120 (140)
166 KOG2032 Uncharacterized conser 20.5 1.2E+03 0.026 26.9 11.7 163 433-608 203-370 (533)
167 KOG1319 bHLHZip transcription 20.3 8.1E+02 0.018 23.9 9.7 90 22-112 120-223 (229)
168 cd03569 VHS_Hrs_Vps27p VHS dom 20.3 7.3E+02 0.016 23.3 10.5 72 535-611 41-116 (142)
169 PF05804 KAP: Kinesin-associat 20.0 1.7E+03 0.036 27.4 19.1 85 489-580 330-420 (708)
No 1
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-95 Score=805.16 Aligned_cols=896 Identities=20% Similarity=0.330 Sum_probs=754.7
Q ss_pred Cch--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCCCChh
Q 002041 1 MEL--QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSE 78 (976)
Q Consensus 1 ~~~--~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~l~~~ 78 (976)
|+. +++|++++..+|++++++.++.+++||++.|.|+.+|++.++|++. ++..++|||||.||+.||+++|++++++
T Consensus 1 md~~~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~-~k~~evqyFGAltL~~ki~~~~e~~~~~ 79 (982)
T KOG2022|consen 1 MDSDLIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQP-DKSSEVQYFGALTLHDKINTRWEECPAN 79 (982)
T ss_pred CCchHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCC-CchhHHHHHhHHHHHHHHHhhhccCChh
Confidence 555 8999999999999999999999999999999999999999999985 6888999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC--CC-----CcHHHHHHHHhhc
Q 002041 79 AVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS--HP-----EFVPGFLELLTVL 151 (976)
Q Consensus 79 ~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l~~--~~-----~~~~~~L~~L~~l 151 (976)
++..|+..++..+..++.+|+.|.+|+|.++|.+.+++-++.||+ .+.+++..+.+ .| -.+..+|+.|+.+
T Consensus 80 ~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~--ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~ 157 (982)
T KOG2022|consen 80 EAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPT--AIQDVIPTLQGQASPLVLADINCEILLEVLSFM 157 (982)
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCc--hHHHHHHHHhcccCccccchhhHHHHHHHhccC
Confidence 999999999999999999999999999999999999998899999 78998888865 33 2467899999999
Q ss_pred ccccccccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhhh----------HHHHHHHHHHHHhhhccCCCCCcccccch
Q 002041 152 PEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----------ELKEQVLEAFASWLRLKHRIPGSVLASHP 221 (976)
Q Consensus 152 ~EE~~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~----------~~~~~~l~~~~sWi~~~~~i~~~~l~~~~ 221 (976)
|+|..+..++ -.||..++.++......+..++..++... .....+++|+.+|+.+. ..+. .....
T Consensus 158 p~e~q~~~l~--~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i-~~~~--~~c~~ 232 (982)
T KOG2022|consen 158 PAEFQHVTLP--LTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYI-SLTG--MDCDQ 232 (982)
T ss_pred cHhhhhccch--hHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHh-cccc--ccHHH
Confidence 9999876654 56788999999999999999888887653 24678999999999963 2332 33334
Q ss_pred hHHHHHhcCCC--c---chHHHHHHHHHHHh------------hhh-ccCCCCCccCchhHHHHHHHHHHh----hHHHh
Q 002041 222 LVLTALSSLHS--E---ILSEASVNVISELI------------HYS-AAGSSGGATVNMPLIQVIVPQIMS----LKAHL 279 (976)
Q Consensus 222 l~~~~~~~L~~--~---~~~~~a~~~l~~ii------------~~~-~~~~~~~~~~~~~~i~~l~~~v~~----l~~~~ 279 (976)
+++.++..++. . +.++.+++.....+ ... ...++ .....+-.++.+..+ ..+..
T Consensus 233 i~~~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~----nti~~li~i~~~~l~e~~~~~~~~ 308 (982)
T KOG2022|consen 233 ITQVLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYR----NTITLLISICLGILQEVSGKIQEE 308 (982)
T ss_pred HHHHHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhcc----chHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555541 1 11222222111111 111 11111 112223333333221 11222
Q ss_pred hhccCCHHHHHHHHHHHHHHhhHHHHHHhcCC------chhHHHHHHHHhhccCCC-----cchhhhhHHHHHHHHHHhc
Q 002041 280 TDSSKDEEDVKAIARLFADMGDSYVELIATGS------DESMLIVHALLEVASHPE-----YDIASMTFNFWHSLQVILT 348 (976)
Q Consensus 280 ~~~~~d~e~~~~~~~l~~~~~~~~~~~l~~~~------~~~~~ll~~lL~~~~~~~-----~~vs~~~l~fW~~l~~~l~ 348 (976)
.+++..+|.+..++++++..+|++.+.+..+. +.+..+++.|+.|++.|+ +.+|..++.||+.|.+++.
T Consensus 309 e~~d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~ 388 (982)
T KOG2022|consen 309 ENADASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIM 388 (982)
T ss_pred hCCCchhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHH
Confidence 23333467788999999999999988776532 246789999999999984 6789999999999999886
Q ss_pred ccccccccCcccchHHHHHHHHHhhH-HHHHHHHHHHHhhccCCCC--CCCCChhhhHHhHhhhhcccccCCccchhhhh
Q 002041 349 KRDSYISFGNEASAEAERSRRLQVFR-SAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFKHTRYDLACCSSSTLTESVM 425 (976)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ll~~l~~k~~~p~d--~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~ 425 (976)
... ++. .+.....|+ |+|.+|+++++.|+.+|.+ +..|+.|++++|++||++
T Consensus 389 ~~~------~e~-----~~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~~YR~d-------------- 443 (982)
T KOG2022|consen 389 QTI------NET-----QQIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSREQFESYRKD-------------- 443 (982)
T ss_pred Hhh------hcc-----CCcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHHHHHHH--------------
Confidence 421 111 111233455 9999999999999999974 678999999999999999
Q ss_pred hhhhhhHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcccccchHHHhhhccCCC-C
Q 002041 426 LIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLP-Q 504 (976)
Q Consensus 426 ~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~~~~-~ 504 (976)
++|+++++|+++| +.+++.+++.+.+....+..++.+|.+.|+|+|++.++++.+..+++..++.+|+...+.+ +
T Consensus 444 ---iSD~~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S 519 (982)
T KOG2022|consen 444 ---ISDLLMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLS 519 (982)
T ss_pred ---HHHHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccc
Confidence 9999999999999 8899999999998876544346789999999999999999999999999999999987654 2
Q ss_pred --cHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHH
Q 002041 505 --QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRT 582 (976)
Q Consensus 505 --~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~ 582 (976)
+|.+..|+..+||.|+.|+..||. ++.+.++.+++|+++++ ....|...+++||++|+.+|.||+++|+..+..
T Consensus 520 ~~n~ql~~Tss~~igs~s~~l~e~P~---~ln~sl~~L~~~Lh~sk-~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e 595 (982)
T KOG2022|consen 520 APNPQLLSTSSDLIGSLSNWLGEHPM---YLNPSLPLLFQGLHNSK-ESEQAISTLKTLCETCPESLDPYADQFSAVCYE 595 (982)
T ss_pred cCChhHHHHHHHHHHHHHHHHhcCCc---ccCchHHHHHHHhcCch-HHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHH
Confidence 799999999999999999999998 99999999999999988 788888889999999999999999999999999
Q ss_pred HhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhh
Q 002041 583 AVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFR 662 (976)
Q Consensus 583 ~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 662 (976)
+++.. .+.+.++.+++.+||+|++.+.+|++.+|+.++++|+++.++.++.....+ +.+...++..+.+++++|.
T Consensus 596 ~l~~~---~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~--~e~~l~~~~~l~~iS~Lft 670 (982)
T KOG2022|consen 596 VLNKS---NAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDD--QENHLRIAFQLNTISALFT 670 (982)
T ss_pred Hhccc---ccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHHHHHHHh
Confidence 98763 577899999999999999999999999999999999999999987765432 2234456678899999999
Q ss_pred hcCCc------------------ccHHHHHHHHhHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHH
Q 002041 663 YVNHP------------------EAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFM-GITIGAILEE 723 (976)
Q Consensus 663 ~~~~~------------------~~~~~~~~~~~~~l~~ll~~~~~~~~v~e~~~~~~~~~~~~~~~~~-~~~l~~l~~~ 723 (976)
++..+ .|++++.++++|+++++++.+-++.+++|.+|.+.++.++..++.+ .|++|.++.+
T Consensus 671 SL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~F 750 (982)
T KOG2022|consen 671 SLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPF 750 (982)
T ss_pred ccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHH
Confidence 98531 2688899999999999999999999999999999999998877766 8999999999
Q ss_pred HHHHHhhcCCccHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhhhcCcccCCCCCccHHHHHHHHHHHHhhCCCcc
Q 002041 724 IQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLF 803 (976)
Q Consensus 724 l~~~~~~~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~ 803 (976)
+.. |.+.+...-+.+...++..+..++.+.+.+...+...++.++.++++.. +.++||+...++.++..++++.|+.+
T Consensus 751 i~r-~~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~-f~n~~Di~~~~~~~v~~ilkk~P~~~ 828 (982)
T KOG2022|consen 751 IVR-FLTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHP-FSNQPDIYLQLIGFVRQILKKIPKFL 828 (982)
T ss_pred HHH-hccchHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccC-CCCCchHHHHHHHHHHHHHHhCcCcc
Confidence 998 9888888889999999998888888999998888888899988888633 79999999999999999999999999
Q ss_pred cC-cCChHHHHH-HHHHhcccCCchhHHHHHHHHHHhhcccCCCCchhhHHHHHHHHhhchHHHHHHHHHHcccCCCCCC
Q 002041 804 IP-SSVFPSLVD-CSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSR 881 (976)
Q Consensus 804 ~~-~~~l~~~~~-~~~~~l~~~~~~~~~~~~~fl~~l~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~~~~~ 881 (976)
.+ ...+.+++. +++..++.+++.+.+++++||+.+++.+++.+ ...+.+++.+.|+.++.+++.|++|..+||.
T Consensus 829 ~~~~~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s~~----~~tv~~~V~~~G~~Li~~im~~vgg~~~RS~ 904 (982)
T KOG2022|consen 829 EPSMLAFTSLILICAFILLNSPEPTTIRAASQFLTALATYATSHD----LVTVTSVVAEIGPILIYAIMRGVGGEASRST 904 (982)
T ss_pred ccchHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhcccch----hHHHHHHHHhcchHHHHHHHHHhcCcCccch
Confidence 87 456777775 99999999999999999999999988765432 2468899999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhhHHHHHHHHHHH--hhCCCCCCCHHHHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHHhh
Q 002041 882 LETVTYALLALTRAYGVRSLEWAKESV--SLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRN 954 (976)
Q Consensus 882 ~~~~~~~L~~l~~~~~~~~~~wl~~~l--~~~p~~~~~~~~k~~f~~~l~~~~~~~~~~~~~~~l~~F~~~cr~~ 954 (976)
++.++|+|+++.++|+.+++.|+.+++ +++|+.+++++.|++|++.|+++| .++|.+++.+.+|+..|||.
T Consensus 905 ld~~aDIL~al~~k~~se~r~wl~~~lq~~gfPs~~~s~e~k~rf~t~llrer--~n~R~~k~~il~~~L~~~~l 977 (982)
T KOG2022|consen 905 LDALADILLALNAKFFSETRTWLKAVLQIPGFPSAGVSNEIKSRFVTSLLRER--GNKRNFKQQILEFNLACTGL 977 (982)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHH--hcHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999 589999999999999999999997 67899999999999999986
No 2
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-69 Score=582.90 Aligned_cols=881 Identities=15% Similarity=0.171 Sum_probs=666.3
Q ss_pred HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHH
Q 002041 4 QNTVKEALNALYHH-PDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRG 82 (976)
Q Consensus 4 ~~~v~~al~~ly~~-~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~~~ 82 (976)
.++|+|||.++..+ .|+..|+||-+|+++++.||+||++|.+++...+.++.+||||.|||.++++...++.+..+...
T Consensus 2 mddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyne~nl~elql 81 (980)
T KOG2021|consen 2 MDDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYNEANLNELQL 81 (980)
T ss_pred chHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccCCHHHHHH
Confidence 47899999999766 79999999999999999999999999999987557889999999999999999888999999999
Q ss_pred HHHHHHHHHHHh--c----CCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCC--cHHHHHHHHhhcccc
Q 002041 83 LQDSLNTLLKKF--H----KGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPE--FVPGFLELLTVLPEE 154 (976)
Q Consensus 83 lr~~Ll~~l~~~--~----~~~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l~~~~~--~~~~~L~~L~~l~EE 154 (976)
+|..+..|+.-- . ++|.+|+||++..++.++...||..|+. ++.++...+.-++. +.++++.+|..|..|
T Consensus 82 vR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~Wns--fF~dlmsv~~~~s~~~~~dfflkvllaIdsE 159 (980)
T KOG2021|consen 82 VRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNS--FFDDLMSVFQVDSAISGLDFFLKVLLAIDSE 159 (980)
T ss_pred HHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHH--HHHHHHHHHhcccchhhHHHHHHHHHHhhhH
Confidence 999999998762 2 3589999999999999999999999999 99999888876554 489999999999999
Q ss_pred cccccccCChh---HHHHHHHHHH-HhHHHHHHHHHHhhh------hhHHHHHHHHHHHHhhhccCCCCCcccccchhHH
Q 002041 155 VFNYKIAARPE---RRRQFEKELT-SQMEVALSTLTACLH------INELKEQVLEAFASWLRLKHRIPGSVLASHPLVL 224 (976)
Q Consensus 155 ~~~~~~~~~~~---~r~~l~~~l~-~~~~~vl~~l~~~l~------~~~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~ 224 (976)
+.+.+...+++ +.+.+++.|+ +++|++...-.+++. ++++...+|+|+++|+.| |..+.+.+.++++
T Consensus 160 iad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSW---IdInLIaNd~f~n 236 (980)
T KOG2021|consen 160 IADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSW---IDINLIANDYFLN 236 (980)
T ss_pred hhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhh---hhhhhhhchhHHH
Confidence 99876544432 2345788884 455666544444433 257888999999998888 6667788999999
Q ss_pred HHHhcCCCcchHHHHHHHHHHHhhhhccCCCCCccCchhHHHHHHH--HHHhhHHHhhhccCCHHHHHHHHHHHHHHhhH
Q 002041 225 TALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVP--QIMSLKAHLTDSSKDEEDVKAIARLFADMGDS 302 (976)
Q Consensus 225 ~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~--~v~~l~~~~~~~~~d~e~~~~~~~l~~~~~~~ 302 (976)
++++.|+.++++.+||+|+.++++++|++. +++++++.+.. .+..+.+ ..+.+|.|+.+.++++++.+|.+
T Consensus 237 LLy~fl~ieelR~aac~cilaiVsKkMkP~-----dKL~lln~L~q~l~lfg~~s--~dq~~d~df~e~vskLitg~gve 309 (980)
T KOG2021|consen 237 LLYKFLNIEELRIAACNCILAIVSKKMKPM-----DKLALLNMLNQTLELFGYHS--ADQMDDLDFWESVSKLITGFGVE 309 (980)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhcCCChh-----HHHHHHHHHHHHHHHHhhhc--cccccCchHHHHHHHHHhhccee
Confidence 999999999999999999999999999654 67888876632 2211111 13347788999999999999987
Q ss_pred HHHHHhc----CC--------chhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHH
Q 002041 303 YVELIAT----GS--------DESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRL 370 (976)
Q Consensus 303 ~~~~l~~----~~--------~~~~~ll~~lL~~~~~~~~~vs~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 370 (976)
....+.+ .+ ......+.++++++.+.+++++...++||+++...+++.. ++ .
T Consensus 310 l~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~---~l-------------s 373 (980)
T KOG2021|consen 310 LTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLK---AL-------------S 373 (980)
T ss_pred eehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcc---cc-------------c
Confidence 6544432 11 1245678999999999999999999999999998886421 11 1
Q ss_pred HhhHHHHHHHHHHHHhhccCCCCCC---C-CChhhhHHhHhhhhcccccCCccchhhhhhhhhhhHHHHHHhhcChhHHH
Q 002041 371 QVFRSAYESLVSLVSFRVQYPQDYQ---D-LSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATL 446 (976)
Q Consensus 371 ~~~~~~~~~Ll~~l~~k~~~p~d~~---~-~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l 446 (976)
+..+.++.+++.++++|+.|++.+. + -++||++.|.+||++ + ..+.+....+.|.-++
T Consensus 374 ~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~Rkk-----------------L-k~fqdti~~idpsl~l 435 (980)
T KOG2021|consen 374 SPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKK-----------------L-KNFQDTIVVIDPSLFL 435 (980)
T ss_pred chhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHH-----------------H-HHHHHHHHhcCHHHHH
Confidence 1234567788899999999988542 2 233667789999999 4 3556666677777777
Q ss_pred HHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCccc----c------cchHHHhhhc--cCCC--CcHHHHHHH
Q 002041 447 KILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE----A------EVMPQVMALL--PKLP--QQPQLLQTV 512 (976)
Q Consensus 447 ~~l~~~l~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~~----~------~~l~~l~~~l--~~~~--~~~~v~~t~ 512 (976)
..+.+.+...+.++. ..+|+.+|+++|.++.+||+.+.+. + ..+..++..+ .+++ +|+.|..-+
T Consensus 436 ~~Ir~slS~al~ns~--e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlf 513 (980)
T KOG2021|consen 436 NNIRQSLSAALMNSK--EESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLF 513 (980)
T ss_pred HHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHH
Confidence 777777776665443 5789999999999999999998652 1 2233444433 2343 389999999
Q ss_pred HHHHHhcHHHHhhCCCCcchHHHHHHHHH--cccCCCh-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhc---
Q 002041 513 CLTIGAYSKWFDAASSDPSILASVLSILT--SGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNG--- 586 (976)
Q Consensus 513 ~~~ig~y~~~~~~~p~~~~~l~~~l~~l~--~~l~~~~-~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~--- 586 (976)
+++|.||..+|...++ .+|.++.++. +|+++.. .|+.+|+|.|.+|++..++.+.|+++.+++.+++++..
T Consensus 514 mE~ivRY~kff~~esq---~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vt 590 (980)
T KOG2021|consen 514 MELIVRYNKFFSTESQ---KIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVT 590 (980)
T ss_pred HHHHHHHHHHHhcchh---hhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Confidence 9999999999999987 8999999885 7888764 69999999999999999999999999999999999842
Q ss_pred ----cCCCCCCHHhHHHHHHHHHHHHhc--CChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcc---hhhhHHHHH
Q 002041 587 ----EGSLKVSAEDSLHLVEALSMVITE--LPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPR---DLTVHIDRF 657 (976)
Q Consensus 587 ----~~~~~l~~~~~~~l~eai~~vi~~--~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~---~~~~~l~~l 657 (976)
++....+.+++.+++|++|.+|.. .|+|+...|+..++.|++.+..-......-.++...+. .....+-.+
T Consensus 591 t~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmai 670 (980)
T KOG2021|consen 591 TINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAI 670 (980)
T ss_pred CcCccccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 122345688999999999999865 78889999999999999887554433322111111111 122344555
Q ss_pred HHHhhhcCC---c---ccHHHHHHHHhHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhc
Q 002041 658 AYIFRYVNH---P---EAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQH 731 (976)
Q Consensus 658 ~~~~~~~~~---~---~~~~~~~~~~~~~l~~ll~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~ 731 (976)
+++.++... + ..+..++.++...+..++..++..+.++.++...+++++.++|+.+.|++|.+++.+..+....
T Consensus 671 g~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d~k 750 (980)
T KOG2021|consen 671 GTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTDLK 750 (980)
T ss_pred HHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCCHH
Confidence 555555432 1 2345567778888888888888888999999999999999999999999999999999888888
Q ss_pred CCccHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhhhcCcccCCCCC-------ccHHHHHHHHHHHHhhCCCccc
Q 002041 732 QQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRP-------DVADDCFLLASRCIRYCPQLFI 804 (976)
Q Consensus 732 ~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~p-------D~~~~~f~l~~~~~~~~p~~~~ 804 (976)
....|+.+++++|++|+.+ +.+.+.+++.++..++++.+.... ...+| ++.++|+.|+..++.+....++
T Consensus 751 Emvdfl~flsQLihkfk~~--~~~ilnqmlppll~rIfsvi~r~a-~p~dt~aa~ek~~lrksy~~fLqtftn~g~~sil 827 (980)
T KOG2021|consen 751 EMVDFLGFLSQLIHKFKTD--CYQILNQMLPPLLNRIFSVIERIA-KPIDTAAAAEKILLRKSYCTFLQTFTNNGVTSIL 827 (980)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccC-CCCChhHHHHHHHHHHHHHHHHHHHhcCCcceee
Confidence 8899999999999999976 999999999999999999887421 22233 3788999999999988776655
Q ss_pred CcC----ChHHHHHHHHH-hcccCCchhHHHHHHHHHHhhc-ccCCCCchhhHHHHHHHHhhchHHHHHHHHHHc---cc
Q 002041 805 PSS----VFPSLVDCSMI-GITVQHREASNSILTFLSDIFD-LAKSCKGEEFLSVRDSVIIPRGASITRILIASL---TG 875 (976)
Q Consensus 805 ~~~----~l~~~~~~~~~-~l~~~~~~~~~~~~~fl~~l~~-~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l---~~ 875 (976)
-++ .++.++...+. +-...++-+.++.......+.. |++......+.+.+- ...|.. .|+... .+
T Consensus 828 at~~n~~~~~~iln~l~~~a~~y~dpmmQksln~lcnk~v~lwggkdg~~gf~dfvl---k~~~ln---~Cf~~pl~~~F 901 (980)
T KOG2021|consen 828 ATDINRAILPVILNDLVTYAPQYIDPMMQKSLNVLCNKIVCLWGGKDGDNGFKDFVL---KIDGLN---KCFPIPLEIPF 901 (980)
T ss_pred eccchhhhhhHHHHHhhhccccccCHHHHHHHHHHHHHHHHhcCCcCCcccccccee---eccccc---ceeeecccCCc
Confidence 432 34444444433 2234566666666655555554 333221112221111 111111 122111 11
Q ss_pred CC----CCCCcccHHHHHHHHHHHhhHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCCchhhhH-HHHHHHHH
Q 002041 876 AL----PSSRLETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAAMA-PVEELSDV 950 (976)
Q Consensus 876 ~~----~~~~~~~~~~~L~~l~~~~~~~~~~wl~~~l~~~p~~~~~~~~k~~f~~~l~~~~~~~~~~~~~~-~l~~F~~~ 950 (976)
+. ....+.++|.+++.+..+.|.++..||.+. .||+.+++++..++|+++|.+ -+.+.|++ .++.|...
T Consensus 902 n~~Dgnt~~~lgEla~llK~i~ek~gnecv~yL~q~--ylPs~q~pqela~qycqaLq~----~d~k~Fk~~f~~~fis~ 975 (980)
T KOG2021|consen 902 NIKDGNTKTMLGELARLLKEIFEKSGNECVKYLTQI--YLPSIQLPQELAIQYCQALQT----MDQKQFKKWFVDNFISV 975 (980)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhchHHHHHHHHH--hcccccCCHHHHHHHHHHHhc----cchhHHHHHHHHHHHHh
Confidence 11 122456788999999999999999999985 799999999999999999975 45677887 66666543
No 3
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-64 Score=539.16 Aligned_cols=550 Identities=37% Similarity=0.595 Sum_probs=480.6
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCChHHHH
Q 002041 24 MQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRT 103 (976)
Q Consensus 24 ~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~ 103 (976)
.+|+.||++||+|+++|++|.++|+. ..+.+...|||||+++||+++++++|+.....+|+.+++++......+..++.
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~-~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~~~~~~i~t 80 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQ-KCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELHDHPDVIRT 80 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHHhCCchHHH
Confidence 47999999999999999999999987 47889999999999999999999999999999999999999997777779999
Q ss_pred HHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCcHHHHHHHHhhcccccccccccCChhHHHHHHHHHHHhHHHHHH
Q 002041 104 QISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALS 183 (976)
Q Consensus 104 kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l~~~~~~~~~~L~~L~~l~EE~~~~~~~~~~~~r~~l~~~l~~~~~~vl~ 183 (976)
||+.++|+++++++ +|.+ ++.++++.+++.+...+++|++|+++|||+.+.+......||+++.+.+..+.+.++.
T Consensus 81 QL~vavA~Lal~~~--~W~n--~I~e~v~~~~~~~~~~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~~~~~L~ 156 (559)
T KOG2081|consen 81 QLAVAVAALALHMP--EWVN--PIFELVRALSNKHPAVPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQVSKVLV 156 (559)
T ss_pred HHHHHHHHHHHHhH--hhcc--hHHHHHHHhhcCCccHHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHhHHHHHH
Confidence 99999999999997 6999 8999998887766568899999999999999988877889999999999999999999
Q ss_pred HHHHhhhhh-----HHHHHHHHHHHHhhhccCCCCCcccc-cchhHHHHHhcCCCcchHHHHHHHHHHHhhhhccCCCCC
Q 002041 184 TLTACLHIN-----ELKEQVLEAFASWLRLKHRIPGSVLA-SHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGG 257 (976)
Q Consensus 184 ~l~~~l~~~-----~~~~~~l~~~~sWi~~~~~i~~~~l~-~~~l~~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~ 257 (976)
++..+++.+ +...++++|+.||.+++ .+|.+.+. +.+++..+|..++++++++.|.+|++.+++.......+
T Consensus 157 ~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~-~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic~ll~~~~~~~~~- 234 (559)
T KOG2081|consen 157 FLSDLLERSDLKSSDDLEQVLRCLGSWLRLH-VFPPDQVLASFPLITLAFRSLSDDELHEEATECICALLYCSLDRSEG- 234 (559)
T ss_pred HHHHHHhhcCCChhhHHHHHHHHHhhhhhhc-cCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHHHHHHHHhhhhhcc-
Confidence 999999874 46699999999999986 57877665 44999999999999999999999999999776432111
Q ss_pred ccCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHHHHhcCCchhHHHHHHHHhhccCCCcchhhhhH
Q 002041 258 ATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTF 337 (976)
Q Consensus 258 ~~~~~~~i~~l~~~v~~l~~~~~~~~~d~e~~~~~~~l~~~~~~~~~~~l~~~~~~~~~ll~~lL~~~~~~~~~vs~~~l 337 (976)
.....+..+.+.++...-....+.+|.+...++||+|+++|+++...+..+|+.+...++.+|.+.+|++.+|.+.+|
T Consensus 235 --~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~SF 312 (559)
T KOG2081|consen 235 --LPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEASF 312 (559)
T ss_pred --CchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhhhH
Confidence 012222222222222222234567788888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhhcccccCC
Q 002041 338 NFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSS 417 (976)
Q Consensus 338 ~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~ 417 (976)
.||+.+.+.++...+ ......|+|++.++++.+.+|++||+| .+...|+.++|.+||..
T Consensus 313 ~fW~~lse~l~~~~~--------------~~~~~~frpy~~rLvs~l~~h~qlp~~-~~~l~Ee~~~f~~fR~~------ 371 (559)
T KOG2081|consen 313 NFWYSLSEELTLTDD--------------DEALGIFRPYFLRLVSLLKRHVQLPPD-QFDLPEEESEFFEFRLK------ 371 (559)
T ss_pred HhhhhhHHHHhcccc--------------HHHHHHhHHHHHHHHHHHHHHccCCCc-cccCccchhHHHHHHHH------
Confidence 999999999876422 245678999999999999999999994 33345667899999999
Q ss_pred ccchhhhhhhhhhhHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcccccchHHHhh
Q 002041 418 STLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMA 497 (976)
Q Consensus 418 ~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~ 497 (976)
++|+++|+..++|.++++++++..+.+ ++.+|+..||+||.+.+++..++.++++.+|++++
T Consensus 372 -----------v~dvl~Dv~~iigs~e~lk~~~~~l~e-------~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~ 433 (559)
T KOG2081|consen 372 -----------VGDVLKDVAFIIGSDECLKQMYIRLKE-------NNASWEEVEAALFILRAVAKNVSPEENTIMPEVLK 433 (559)
T ss_pred -----------HHHHHHHHHHHhCcHHHHHHHHHHHcc-------CCCchHHHHHHHHHHHHHhccCCccccchHHHHHH
Confidence 999999999999999999999988875 26799999999999999999999999999999999
Q ss_pred hccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhhhhhcCHHHHH
Q 002041 498 LLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLY 577 (976)
Q Consensus 498 ~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~~~L~~~l~~ll 577 (976)
.+.++|.+..+|+|++.++|+|++|+..||+ ++.++++++..++.... ++.+|+.++.++|..|+.++.++++.+.
T Consensus 434 ~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~---~le~v~~~~~~~~~~~~-~as~~a~~~~~i~~~c~~~~~~l~~~~~ 509 (559)
T KOG2081|consen 434 LICNLPEQAPLRYTSILLLGEYSEWVEQHPE---LLEPVLRYIRQGLQLKR-LASAAALAFHRICSACRVQMTCLIPSLL 509 (559)
T ss_pred HHhCCccchhHHHHHHHHHHHHHHHHHhCcH---HHHHHHHHHHHHhhhcc-hhHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 9999997666999999999999999999998 99999999999998888 9999999999999999999998888888
Q ss_pred HHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHH
Q 002041 578 NVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTP 630 (976)
Q Consensus 578 ~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~ 630 (976)
..+..+... ..+.+... +++|++.+++.+|.++.+..++.++.|.+..
T Consensus 510 ~l~~~l~~~----~~~~e~a~-l~~~~s~i~~~lp~~k~~~~~~el~~~~l~~ 557 (559)
T KOG2081|consen 510 ELIRSLDST----QINEEAAC-LLQGISLIISNLPAHKAKIALEELCEPQLRN 557 (559)
T ss_pred HHHHHHHHH----hccHHHHH-HHHHHHHHHhcCCHhhhhHHHHHHhhHHHhc
Confidence 777766553 24566666 9999999999999999999999999998654
No 4
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=100.00 E-value=5.8e-53 Score=448.02 Aligned_cols=913 Identities=16% Similarity=0.199 Sum_probs=640.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHH
Q 002041 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGL 83 (976)
Q Consensus 4 ~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~~~l 83 (976)
++-+.+.|.++|.+ +...++||++.|.+||..|+||+-+..+|+. ++.++.+|.|.++|...|.++|.-+|++++.++
T Consensus 13 iallDkVVttfyqg-~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~-S~~pqskyiALs~LdklIttkWkllp~~~r~Gi 90 (1053)
T COG5101 13 IALLDKVVTTFYQG-DGRKQEQAQRILTKFQELPDAWTKADYILNN-SKLPQSKYIALSLLDKLITTKWKLLPEGMRQGI 90 (1053)
T ss_pred HHHHHHHHHHhcCC-CchhHHHHHHHHHHHHhCchHHHHHHHHHhc-ccCcchhhhHHHHHHHHHHhhhhhCCcHHHHHH
Confidence 35567888888755 5557889999999999999999999999986 788999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC------CChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCcHHHHHHHHhhccccccc
Q 002041 84 QDSLNTLLKKFHK------GPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFN 157 (976)
Q Consensus 84 r~~Ll~~l~~~~~------~~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l~~~~~~~~~~L~~L~~l~EE~~~ 157 (976)
|+++++.+..-++ ..+.+.+|+-.+|..++.+.+|..||+ |++++++..+.+-+.++.-+.+|+.|.||+.+
T Consensus 91 Rnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~--FIpeli~~S~~s~~vCeNnmivLklLsEEvFd 168 (1053)
T COG5101 91 RNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPT--FIPELINVSQISMEVCENNMIVLKLLSEEVFD 168 (1053)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccch--hhHHHHhhccchHHHHhccHHHHHHhHHHHHh
Confidence 9999999877442 247899999999999999999999999 99999987765556778889999999999987
Q ss_pred ccc-cCChhHHHHHHHHHHHhHHHHHHHHHHhhhh---hHHHHHHHHHHHHhhhccCCCCCcccccchhHHHHHhc-CCC
Q 002041 158 YKI-AARPERRRQFEKELTSQMEVALSTLTACLHI---NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSS-LHS 232 (976)
Q Consensus 158 ~~~-~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~---~~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~~~~~-L~~ 232 (976)
..- .++..+...+++.|...+|++++++.+++.. +++.+++|+++..++.| +|.+.+..+.+++++.+. ++.
T Consensus 169 fSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~w---iPl~yIfeTnIieLv~~~f~s~ 245 (1053)
T COG5101 169 FSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEW---IPLDYIFETNIIELVLEHFNSM 245 (1053)
T ss_pred ccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh---CchhHHHHHHHHHHHHHHhccC
Confidence 542 2345566678888999999999999999875 46777777776666665 566677788899988866 457
Q ss_pred cchHHHHHHHHHHHhhhhccCCCCCccCchhHHHHHHHHHH------------hhHHHhhhccCC-HHHHHHHHHHHHHH
Q 002041 233 EILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIM------------SLKAHLTDSSKD-EEDVKAIARLFADM 299 (976)
Q Consensus 233 ~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~v~------------~l~~~~~~~~~d-~e~~~~~~~l~~~~ 299 (976)
|+++.++++|++||.+-++.+..++ ++...+-..+..+. .+++.+...+.. ..+.+.++.+++++
T Consensus 246 pd~r~~tl~CLtEi~~L~~~pq~n~--~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~s~ 323 (1053)
T COG5101 246 PDTRVATLSCLTEIVDLGRHPQENA--EKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLSSL 323 (1053)
T ss_pred CchhHHHHHHHHHHHhhccCcccch--hhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHHHH
Confidence 8999999999999998775432221 11111111111111 122222223333 36789999999999
Q ss_pred hhHHHHHHhcCC--chhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhccccc-cc--ccCc-------------ccc
Q 002041 300 GDSYVELIATGS--DESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDS-YI--SFGN-------------EAS 361 (976)
Q Consensus 300 ~~~~~~~l~~~~--~~~~~ll~~lL~~~~~~~~~vs~~~l~fW~~l~~~l~~~~~-~~--~~~~-------------~~~ 361 (976)
.+.+..++.... +.......+++++....+.++...++++|..+.-+++..-+ .. .+++ .|.
T Consensus 324 ~~~~~~lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s~~istnpn 403 (1053)
T COG5101 324 YEVYISLLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGSQAISTNPN 403 (1053)
T ss_pred HHHHHHHhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccchhccCCcc
Confidence 999998885321 13445578899999999999999999999999877654311 00 0111 222
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhhcccccCCccchhhhhhhhhhhHHHHHHhhcC
Q 002041 362 AEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLG 441 (976)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~ 441 (976)
.++.++-+...|..++++|.-+++++|.-|++.--..+|+-+--++|-++ |-|-++|+ -+.+++.++.+..-
T Consensus 404 ~~~~~pLrkhiY~~ilsqLrlvlienMvrPEEVliVendegEivRefvke-------tDtI~lYk-smRevLvyLthL~v 475 (1053)
T COG5101 404 QDSTKPLRKHIYIGILSQLRLVLIENMVRPEEVLIVENDEGEIVREFVKE-------TDTIELYK-SMREVLVYLTHLIV 475 (1053)
T ss_pred hhcccchHHHHHHHHHHHHHHHHHHcCCCcceEEEEECCCcHHHHHHhcc-------ccHhHHHH-HHhhHHHHHhhhhh
Confidence 23234556678999999999999999999986321111211212222221 00111111 15667777776655
Q ss_pred hhHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCccc-ccchHHHhhhcc------CCC-CcHHHHHHHH
Q 002041 442 GDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE-AEVMPQVMALLP------KLP-QQPQLLQTVC 513 (976)
Q Consensus 442 ~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~~-~~~l~~l~~~l~------~~~-~~~~v~~t~~ 513 (976)
+++-.++..++...+. ...++|+.+...+|++|++|..+++.. ..++-+++..|. +.. ....+....+
T Consensus 476 -~Dte~~mi~Klarq~d---g~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIM 551 (1053)
T COG5101 476 -DDTEKYMIGKLARQLD---GKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIM 551 (1053)
T ss_pred -hhHHHHHHHHHHHHhc---CCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhheccee
Confidence 4577777777776553 237999999999999999999998764 456666666542 222 3578899999
Q ss_pred HHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCC-hHHHHHHHHHHHHHHHHhhhhhh----cCHHHHHHHHHHHhhccC
Q 002041 514 LTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKLC----GYLDGLYNVYRTAVNGEG 588 (976)
Q Consensus 514 ~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~-~~v~~~A~~al~~l~~~~~~~L~----~~l~~ll~~~~~~~~~~~ 588 (976)
.++|+|.+|+.+|.. +|.+++..++..+++. +.|+.+||..|.++++.|+.+.. ...++++..+...+...
T Consensus 552 yvvGQYpRFLkahw~---FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~kt- 627 (1053)
T COG5101 552 YVVGQYPRFLKAHWS---FLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKT- 627 (1053)
T ss_pred eeeccchHHHHHHHH---HHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhh-
Confidence 999999999999987 9999999999999875 46999999999999999998875 22333443333333221
Q ss_pred CCCCCHHhHHHHHHHHHHHHhcCChH-HHHHHHHHhhhHHHHHHHHHHhcCCCcccccC-cchh-hhHHHHHHHHhhh--
Q 002041 589 SLKVSAEDSLHLVEALSMVITELPQV-DAKKALEMLCLPVVTPLQEIINQGPEILQKKH-PRDL-TVHIDRFAYIFRY-- 663 (976)
Q Consensus 589 ~~~l~~~~~~~l~eai~~vi~~~p~~-~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~-~~~~-~~~l~~l~~~~~~-- 663 (976)
..++.+......|||+|.+|+..|.. +....+..++.-....|.++..++..+..... .... +.+-...+.+..+
T Consensus 628 T~dL~pqQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~niv~qa~~n~~~L~d~~tvki~an~~ktnVa~cts 707 (1053)
T COG5101 628 TGDLEPQQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWLNIVIQADENINRLSDTMTVKIDANKMKTNVAKCTS 707 (1053)
T ss_pred cccCChHHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhh
Confidence 12578889999999999999999975 34456666666666677776655443211000 0000 0111111222211
Q ss_pred cC---CcccHHHHHHHHhHHHHHHH---Hhh------cC-CH------HHHHHHHHHHHHHH---HHhhhhhhhhHHHHH
Q 002041 664 VN---HPEAVADAIQRLWPIFKAIF---DIR------AW-DM------RTMESLCRACKYAV---RTSKRFMGITIGAIL 721 (976)
Q Consensus 664 ~~---~~~~~~~~~~~~~~~l~~ll---~~~------~~-~~------~v~e~~~~~~~~~~---~~~~~~~~~~l~~l~ 721 (976)
+. -|+.+..+...+.+...... ... .. .+ .|...+..++..-+ +.+.-....++++++
T Consensus 708 lg~~fyPq~~~~y~~ml~ly~avs~~Is~~vaaeg~iatktp~vrglrtiKkEIlkLv~tyIska~dl~~V~n~lv~~l~ 787 (1053)
T COG5101 708 LGYRFYPQTCSSYCIMLFLYFAVSFDISNSVAAEGLIATKTPAVRGLRTIKKEILKLVATYISKARDLKFVQNDLVNMLC 787 (1053)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccchHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 11 14444444444333222211 110 00 00 11112222222111 111122235778899
Q ss_pred HHHHHHHhhc----CCccHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhhhcCcccCCCCCccHHHHHHHHHHHHh
Q 002041 722 EEIQGLYQQH----QQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIR 797 (976)
Q Consensus 722 ~~l~~~~~~~----~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~ 797 (976)
+.+.-+|..+ +.+..|.+.+.++...++- ......-.+.+++.+++.++. .+++++|+...+||.|+..+..
T Consensus 788 eaVl~DY~nNvPdardaevLnl~ttiV~~v~~~--i~~~~~l~l~svf~ctl~mi~--kdf~EypEhr~~f~~Ll~~inl 863 (1053)
T COG5101 788 EAVLFDYKNNVPDARDAEVLNLGTTIVRNVESV--IYLQRELFLISVFICTLIMIV--KDFDEYPEHRKNFLLLLENINL 863 (1053)
T ss_pred HHHHHHHhcCCCccccHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHhhhHHHHH--hhhhhChHHHHHHHHHHHHHHH
Confidence 9888888875 3577899999999988853 333332333444556655554 5689999999999999999999
Q ss_pred hCCCccc--CcCChHHHHHHHHHhcccCCchhHHHHHHHHHHhhcccCCCCchhhHHHHHHHHhhchHHHHHHHHHHccc
Q 002041 798 YCPQLFI--PSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTG 875 (976)
Q Consensus 798 ~~p~~~~--~~~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~l~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~ 875 (976)
++...++ +.|.+..+.+..+.++...+|+.....++.+..++..+..- +++ .++++..++.-..+..++..+..
T Consensus 864 ~sF~afl~~p~p~Fklv~nti~wsfkhi~RDv~~~gLnill~l~kn~~~m-g~~---~~n~F~~~yy~s~l~~il~vltD 939 (1053)
T COG5101 864 FSFSAFLSFPQPSFKLVYNTILWSFKHINRDVSDLGLNILLILFKNCHEM-GVP---FINQFYAQYYMSTLENILGVLTD 939 (1053)
T ss_pred HhHHHHHcCCcHHHHHHHHHHHHHHHhccchHhhhhhHHHHHHHHHHHHh-CCc---hHHHHHHHHHHHHHHHHHeeeec
Confidence 8877765 46789999999999999999999999999999999876432 233 36777777777888888888877
Q ss_pred CCCCCCcccHHHHHHHHHHHhh----------------HHHHHHHHHHH-hhCCCCCCCHHHHHHHHHHHHHHhcCCCch
Q 002041 876 ALPSSRLETVTYALLALTRAYG----------------VRSLEWAKESV-SLIPLTALAEVERSRFLQALSEAASGVDVN 938 (976)
Q Consensus 876 ~~~~~~~~~~~~~L~~l~~~~~----------------~~~~~wl~~~l-~~~p~~~~~~~~k~~f~~~l~~~~~~~~~~ 938 (976)
.-+.+.++..+-+|..+.+..- ..+++|+.+.+ .+|| ++|+|....|.-.++..- +|-.
T Consensus 940 sDhKsgF~~Q~Llla~li~lv~dnkisVPlyd~~~~n~~~lseyi~~l~~~sfp--~it~e~v~~f~~~l~~~~--~d~~ 1015 (1053)
T COG5101 940 SDHKSGFDQQCLLLAFLIRLVKDNKISVPLYDGINPNITILSEYIVGLFVKSFP--NITQESVKIFSVGLFELC--GDDE 1015 (1053)
T ss_pred cchhccchHHHHHHHHHHHHHhccccccccccCCCCchhhHHHHHHHHHHhhcC--cccHHHHHHHHHHHHHHh--CcHH
Confidence 7788999988888877765332 24677877766 5899 789999999999998863 6778
Q ss_pred hhhHHHHHHHHHHHh
Q 002041 939 AAMAPVEELSDVCRR 953 (976)
Q Consensus 939 ~~~~~l~~F~~~cr~ 953 (976)
-||..++||-.....
T Consensus 1016 ifk~~~~df~vkv~e 1030 (1053)
T COG5101 1016 IFKEHVEDFRVKVYE 1030 (1053)
T ss_pred HHHHHHHHHhhheee
Confidence 999999999875543
No 5
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.4e-45 Score=389.46 Aligned_cols=762 Identities=16% Similarity=0.218 Sum_probs=537.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcC-CCchHHHHHHHHHHHHHhhcCCCCCChhhHHHHH
Q 002041 6 TVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDA-TSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQ 84 (976)
Q Consensus 6 ~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~-~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~~~lr 84 (976)
+|.+.++.- .++|++.|+.++..|++|+..|+.-.....+|... +.+..+|-.|...|+|.++..|...+++....+|
T Consensus 14 ql~~lLk~s-~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiK 92 (885)
T KOG2023|consen 14 QLAQLLKNS-QSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIK 92 (885)
T ss_pred HHHHHHHhc-cCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHHHH
Confidence 344444443 47899999999999999999999998887777642 4677899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CcHHHHHHHHhhcccccccc-cccC
Q 002041 85 DSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEVFNY-KIAA 162 (976)
Q Consensus 85 ~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l~~~~-~~~~~~L~~L~~l~EE~~~~-~~~~ 162 (976)
..++..+.. .++.||+-....++.++...+...||+ .++.+.+.+.+.. ..++..+.-|..++|+.... +...
T Consensus 93 s~~l~~lgd---~~~lIr~tvGivITTI~s~~~~~~wpe--lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~ 167 (885)
T KOG2023|consen 93 SECLHGLGD---ASPLIRATVGIVITTIASTGGLQHWPE--LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDV 167 (885)
T ss_pred HHHHhhccC---chHHHHhhhhheeeeeecccccccchh--HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhc
Confidence 999988766 567899988888999988888789999 9999999987643 56788999999999986532 1111
Q ss_pred ChhHHHHHHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhccCCCCCcccccchhHHHHHhcCCCcchHHHHHHH
Q 002041 163 RPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNV 242 (976)
Q Consensus 163 ~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~~~~~L~~~~~~~~a~~~ 242 (976)
..+-|.-.+|..++++... ++.++..++.|++..|-.. + ..+.. .+|
T Consensus 168 -------~~rpl~~mipkfl~f~~h~--spkiRs~A~~cvNq~i~~~---~------qal~~--------------~iD- 214 (885)
T KOG2023|consen 168 -------LTRPLNIMIPKFLQFFKHP--SPKIRSHAVGCVNQFIIIQ---T------QALYV--------------HID- 214 (885)
T ss_pred -------ccCchHHhHHHHHHHHhCC--ChhHHHHHHhhhhheeecC---c------HHHHH--------------HHH-
Confidence 1223455567777777655 5678899999998877631 0 11110 000
Q ss_pred HHHHhhhhccCCCCCccCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHHHHhcCCchhHHHHHHHH
Q 002041 243 ISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALL 322 (976)
Q Consensus 243 l~~ii~~~~~~~~~~~~~~~~~i~~l~~~v~~l~~~~~~~~~d~e~~~~~~~l~~~~~~~~~~~l~~~~~~~~~ll~~lL 322 (976)
+.++.+|. + ..++|++..+++|+.|+-+.+..+..+. ++...++++||
T Consensus 215 --------------------~Fle~lFa--------l-anD~~~eVRk~vC~alv~Llevr~dkl~---phl~~IveyML 262 (885)
T KOG2023|consen 215 --------------------KFLEILFA--------L-ANDEDPEVRKNVCRALVFLLEVRPDKLV---PHLDNIVEYML 262 (885)
T ss_pred --------------------HHHHHHHH--------H-ccCCCHHHHHHHHHHHHHHHHhcHHhcc---cchHHHHHHHH
Confidence 12222221 1 3577888999999999999999888776 47889999999
Q ss_pred hhccCCCcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCC---C-CC
Q 002041 323 EVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQ---D-LS 398 (976)
Q Consensus 323 ~~~~~~~~~vs~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~d~~---~-~~ 398 (976)
+.+..+|++|+-.+.+||..+++.- --.+.+.|++.+++++++.+|+|-++.. + -+
T Consensus 263 ~~tqd~dE~VALEACEFwla~aeqp--------------------i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~e 322 (885)
T KOG2023|consen 263 QRTQDVDENVALEACEFWLALAEQP--------------------ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNE 322 (885)
T ss_pred HHccCcchhHHHHHHHHHHHHhcCc--------------------CcHHHHHHHHHHHHHHHHccCccccccHHHhcCcc
Confidence 9999999999999999999998732 1135688999999999999999976310 0 00
Q ss_pred h----hhhH-----HhHhhhhcc----------------cccCCccchhhhhhhhhhhHHHHHHhhcChhHHHHHHHHHH
Q 002041 399 L----EDLK-----EFKHTRYDL----------------ACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKF 453 (976)
Q Consensus 399 ~----d~~~-----~f~~~R~~~----------------~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l 453 (976)
+ +|+| .|..-|... --|+-+.|++|++..+..|++.+++ | ++++.++.+.+
T Consensus 323 eD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf---~-~elL~~l~PlL 398 (885)
T KOG2023|consen 323 EDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVF---G-DELLPILLPLL 398 (885)
T ss_pred ccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhh---H-HHHHHHHHHHH
Confidence 0 0111 121111110 0133444777777666788887654 6 77999999999
Q ss_pred HHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcccccchHHHhhhccC-CC-CcHHHHHHHHHHHHhcHHHHhhCCCCcc
Q 002041 454 VEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-LP-QQPQLLQTVCLTIGAYSKWFDAASSDPS 531 (976)
Q Consensus 454 ~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~~-~~-~~~~v~~t~~~~ig~y~~~~~~~p~~~~ 531 (976)
.+.+. +..|...||+++++|+|+|++...-.+++|.++.++.+ +. ..|.||+.+||++|||+.|+...+. .+
T Consensus 399 k~~L~-----~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~-~~ 472 (885)
T KOG2023|consen 399 KEHLS-----SEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSR-DE 472 (885)
T ss_pred HHHcC-----cchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCCh-Hh
Confidence 98764 57899999999999999999998888999999998754 43 3689999999999999999988663 24
Q ss_pred hHHHHHHHHH-cccCCChHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhc
Q 002041 532 ILASVLSILT-SGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (976)
Q Consensus 532 ~l~~~l~~l~-~~l~~~~~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (976)
++.+++.-+. +.++..++|+.+||.||..|.++....|+||++.|++.+...++. +...+..-+|+|||.+..+
T Consensus 473 ~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~k-----YQ~KNLlILYDAIgtlAds 547 (885)
T KOG2023|consen 473 YFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGK-----YQKKNLLILYDAIGTLADS 547 (885)
T ss_pred hhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH-----HhhcceehHHHHHHHHHHH
Confidence 8888886554 556666789999999999999999999999999999999888863 6677888999999999999
Q ss_pred CChH-HHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhc
Q 002041 611 LPQV-DAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRA 689 (976)
Q Consensus 611 ~p~~-~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~ 689 (976)
++.. ....|++.++.|++++|+.+-+.. +++...++|++.+...++.. +.|
T Consensus 548 vg~~Ln~~~YiqiLmPPLi~KW~~lsd~D---------KdLfPLLEClSsia~AL~~g---------F~P---------- 599 (885)
T KOG2023|consen 548 VGHALNKPAYIQILMPPLIEKWELLSDSD---------KDLFPLLECLSSIASALGVG---------FLP---------- 599 (885)
T ss_pred HHHhcCcHHHHHHhccHHHHHHHhcCccc---------chHHHHHHHHHHHHHHHhcc---------ccc----------
Confidence 8766 345889999999999998764432 45777899999998877531 111
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCCccHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHH
Q 002041 690 WDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTT 769 (976)
Q Consensus 690 ~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~ 769 (976)
-..+|.+++++++.++.......-. |+.. ..+.+...-+.|++++.+++..|.+ +.+.+.+- .+..-.+
T Consensus 600 ~~~~Vy~Rc~~il~~t~q~~~~~~~---~~~~----~~pdkdfiI~sLDL~SGLaegLg~~--ie~Lva~s--nl~~lll 668 (885)
T KOG2023|consen 600 YAQPVYQRCFRILQKTLQLLAKVQQ---DPTV----EAPDKDFIIVSLDLLSGLAEGLGSH--IEPLVAQS--NLLDLLL 668 (885)
T ss_pred cCHHHHHHHHHHHHHHHHHHHhccC---Cccc----cCCCcceEEEeHHHHhHHHHHhhhc--hHHHhhhc--cHHHHHH
Confidence 1124555666666655332111101 1111 1123333467799999999999976 44443320 1111112
Q ss_pred hhhcCcccCCCCCccHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHhcccCCchhHHHHHHHHHHhhcccCCCCchh
Q 002041 770 CLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEE 849 (976)
Q Consensus 770 ~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~l~~~~~~~~~~~ 849 (976)
..+ .++-||++++.|.|++.+.+.|+..+.+ .+..++....+.+......++..|+--+..+..... .+..
T Consensus 669 ~C~-----~D~~peVRQS~FALLGDltk~c~~~v~p--~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g-~~~~- 739 (885)
T KOG2023|consen 669 QCL-----QDEVPEVRQSAFALLGDLTKACFEHVIP--NLADFLPILGANLNPENISVCNNAIWAIGEIALKMG-LKMK- 739 (885)
T ss_pred HHh-----ccCChHHHHHHHHHHHHHHHHHHHhccc--hHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhc-hhhh-
Confidence 222 3778999999999999999999888776 455555554455655555555555555555543321 1111
Q ss_pred hHHHHHHHHhhchHHHHHHHHHHc-ccCCCCCCcccHHHHHHHHHHHhhHHHHHHHHHHHh-hCCC-CCC-CHHHHHHHH
Q 002041 850 FLSVRDSVIIPRGASITRILIASL-TGALPSSRLETVTYALLALTRAYGVRSLEWAKESVS-LIPL-TAL-AEVERSRFL 925 (976)
Q Consensus 850 ~~~~~~~~~~~~g~~lv~~ll~~l-~~~~~~~~~~~~~~~L~~l~~~~~~~~~~wl~~~l~-~~p~-~~~-~~~~k~~f~ 925 (976)
+++ ..++..++.-+ ....|++.+++.|..++++...+|+++...+.+.+. ..-+ .++ +.++|+.-.
T Consensus 740 ------~~v----~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAF 809 (885)
T KOG2023|consen 740 ------QYV----SPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAF 809 (885)
T ss_pred ------hHH----HHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHH
Confidence 222 22333344333 456788999999999999999999876554444331 0000 011 556666644
Q ss_pred HHHHHH
Q 002041 926 QALSEA 931 (976)
Q Consensus 926 ~~l~~~ 931 (976)
..+..-
T Consensus 810 rG~c~m 815 (885)
T KOG2023|consen 810 RGLCNM 815 (885)
T ss_pred HHHHHh
Confidence 444433
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-35 Score=341.08 Aligned_cols=600 Identities=18% Similarity=0.229 Sum_probs=437.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHH
Q 002041 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGL 83 (976)
Q Consensus 4 ~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~~~l 83 (976)
++.+.+.+..+ .+||+++|++|++.|+..-+++..-....+++.. +.++++|.+||..+|+.+.+.|+.++++.+..|
T Consensus 3 ~~~l~qLl~~l-~spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~-~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~si 80 (1075)
T KOG2171|consen 3 SAPLEQLLQQL-LSPDNEVRRQAEEALETLAKTEPLLPALAHILAT-SADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSI 80 (1075)
T ss_pred hhHHHHHHHHh-cCCCchHHHHHHHHHHHhhcccchHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 46688999998 5778889999999999766666666666777775 789999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC-CCCcHHHHHHHHhhcccccccccccC
Q 002041 84 QDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS-HPEFVPGFLELLTVLPEEVFNYKIAA 162 (976)
Q Consensus 84 r~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l~~-~~~~~~~~L~~L~~l~EE~~~~~~~~ 162 (976)
|..|+..+.+ +..+.||+|+|.++|.++....++.||+ +++.+++..++ ++...+..+.+|..+|+-+++..
T Consensus 81 ks~lL~~~~~--E~~~~vr~k~~dviAeia~~~l~e~WPe--ll~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~--- 153 (1075)
T KOG2171|consen 81 KSSLLEIIQS--ETEPSVRHKLADVIAEIARNDLPEKWPE--LLQFLFQSTKSPNPSLRESALLILSSLPETFGNTL--- 153 (1075)
T ss_pred HHHHHHHHHh--ccchHHHHHHHHHHHHHHHhccccchHH--HHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc---
Confidence 9999999988 4568899999999999999998878999 99999999876 45578899999999999887642
Q ss_pred ChhHHHHHHHHHHHhHHHHHHHHHHhhhhh--HHHHHHHHHHHHhhhccCCCCCcccccchhHHHHHhcCCCcchHHHHH
Q 002041 163 RPERRRQFEKELTSQMEVALSTLTACLHIN--ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASV 240 (976)
Q Consensus 163 ~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~--~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~~~~~L~~~~~~~~a~ 240 (976)
..+.+.+..++.++++++ .++..+++++.+.+.+. +.+
T Consensus 154 ------------~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~---~~~------------------------- 193 (1075)
T KOG2171|consen 154 ------------QPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYL---ENN------------------------- 193 (1075)
T ss_pred ------------chhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHh---ccc-------------------------
Confidence 235677888888888774 37777788887777652 100
Q ss_pred HHHHHHhhhhccCCCCCccCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHHHHhcCCchhHHHHHH
Q 002041 241 NVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHA 320 (976)
Q Consensus 241 ~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~v~~l~~~~~~~~~d~e~~~~~~~l~~~~~~~~~~~l~~~~~~~~~ll~~ 320 (976)
....+.+..++|.+++..+... .++|++..+...+.|.++.+..++++. +.+.+++++
T Consensus 194 ------------------~~~~~~~~~llP~~l~vl~~~i-~~~d~~~a~~~l~~l~El~e~~pk~l~---~~l~~ii~~ 251 (1075)
T KOG2171|consen 194 ------------------KSEVDKFRDLLPSLLNVLQEVI-QDGDDDAAKSALEALIELLESEPKLLR---PHLSQIIQF 251 (1075)
T ss_pred ------------------hHHHHHHHHHhHHHHHHhHhhh-hccchHHHHHHHHHHHHHHhhchHHHH---HHHHHHHHH
Confidence 0123455666777665333321 244556677888999999999888884 467889999
Q ss_pred HHhhccCC--CcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCCC
Q 002041 321 LLEVASHP--EYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLS 398 (976)
Q Consensus 321 lL~~~~~~--~~~vs~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~d~~~~~ 398 (976)
.+++.++. ++.+...+++|...+.+... .......++..+|+.+++.-|.=-++.++|.
T Consensus 252 ~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap-------------------~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~ 312 (1075)
T KOG2171|consen 252 SLEIAKNKELENSIRHLALEFLVSLSEYAP-------------------AMCKKLALLGHTLVPVLLAMMTEEEDDDEWS 312 (1075)
T ss_pred HHHHhhcccccHHHHHHHHHHHHHHHHhhH-------------------HHhhhchhhhccHHHHHHHhcCCcccchhhc
Confidence 99998876 67899999999888877532 1122334455667776664443222335664
Q ss_pred h-hhh--HHhH-hhhhcccccCCccchhhhhhhhhhhHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhHHH
Q 002041 399 L-EDL--KEFK-HTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAAL 474 (976)
Q Consensus 399 ~-d~~--~~f~-~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~L 474 (976)
. |+. |++. -+|. ....+.-+...+|+..++..+++.+...+. +.+|..+.|+|
T Consensus 313 ~~d~~ded~~~~~~~~------------------A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~-----S~~w~~R~AaL 369 (1075)
T KOG2171|consen 313 NEDDLDEDDEETPYRA------------------AEQALDRLALHLGGKQVLPPLFEALEAMLQ-----STEWKERHAAL 369 (1075)
T ss_pred cccccccccccCcHHH------------------HHHHHHHHHhcCChhhehHHHHHHHHHHhc-----CCCHHHHHHHH
Confidence 3 222 2211 1111 223444555678888888888888887764 67899999999
Q ss_pred HHHHHhhcccCcccccchHHHhhhcc-CCC-CcHHHHHHHHHHHHhcHHHHhhCCC--CcchHHHHHHHHHcccCCChHH
Q 002041 475 FCIRAISTYVSVVEAEVMPQVMALLP-KLP-QQPQLLQTVCLTIGAYSKWFDAASS--DPSILASVLSILTSGMSTSEDT 550 (976)
Q Consensus 475 ~~l~~i~e~~~~~~~~~l~~l~~~l~-~~~-~~~~v~~t~~~~ig~y~~~~~~~p~--~~~~l~~~l~~l~~~l~~~~~v 550 (976)
.++++++|++.......+++|++.+. .+. +||+||+++|.+||+++.-|..+-+ .++.+++.+-.....-.+++ |
T Consensus 370 ~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~r-V 448 (1075)
T KOG2171|consen 370 LALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVR-V 448 (1075)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchH-H
Confidence 99999999998877778999999865 443 5999999999999999986653211 01255655555545445556 9
Q ss_pred HHHHHHHHHHHHHHhhh-hhhcCHHHHHH-HHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHH
Q 002041 551 AAAAALAFRHICDDCRK-KLCGYLDGLYN-VYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVV 628 (976)
Q Consensus 551 ~~~A~~al~~l~~~~~~-~L~~~l~~ll~-~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~ 628 (976)
+.+|+.|+-+|.++|.+ .+.||++.+|+ .+.-+.++ -+...++.++.+||+|..+.. +...+|..+++.-
T Consensus 449 ~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~-----~~~~v~e~vvtaIasvA~AA~-~~F~pY~d~~Mp~-- 520 (1075)
T KOG2171|consen 449 QAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQS-----SKPYVQEQAVTAIASVADAAQ-EKFIPYFDRLMPL-- 520 (1075)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcC-----CchhHHHHHHHHHHHHHHHHh-hhhHhHHHHHHHH--
Confidence 99999999999999965 57799999999 44445443 356789999999999998853 3556777775555
Q ss_pred HHHHHHHhcCCCcccccCcch-hhhHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhh-cCCHHHHHHHHHHHHHHH
Q 002041 629 TPLQEIINQGPEILQKKHPRD-LTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIR-AWDMRTMESLCRACKYAV 706 (976)
Q Consensus 629 ~~l~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~~~v~e~~~~~~~~~~ 706 (976)
+.+++.+.... + .+. -...+++++.+...++ .+.+.+..++++.++..+...- ..|....+.....+.++.
T Consensus 521 --L~~~L~n~~~~--d--~r~LrgktmEcisli~~AVG-ke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc 593 (1075)
T KOG2171|consen 521 --LKNFLQNADDK--D--LRELRGKTMECLSLIARAVG-KEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMC 593 (1075)
T ss_pred --HHHHHhCCCch--h--hHHHHhhHHHHHHHHHHHhh-hhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHH
Confidence 45555544321 1 111 1235788888877764 3455566677777666654221 224456777778888899
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHhhcC
Q 002041 707 RTSKRFMGITIGAILEEIQGLYQQHQ 732 (976)
Q Consensus 707 ~~~~~~~~~~l~~l~~~l~~~~~~~~ 732 (976)
+.+|+++.|++|.++.-+...-+..|
T Consensus 594 ~ilg~~F~p~L~~Vmppl~~ta~~~p 619 (1075)
T KOG2171|consen 594 RILGDDFAPFLPVVMPPLLKTARLDP 619 (1075)
T ss_pred HHhchhhHhHHHHHhHHHHHhhccCC
Confidence 99999999999999887766555433
No 7
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-30 Score=292.37 Aligned_cols=803 Identities=14% Similarity=0.176 Sum_probs=505.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCC---------CC
Q 002041 6 TVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEE---------LP 76 (976)
Q Consensus 6 ~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~---------l~ 76 (976)
.+.+++.+-. .+||+.|+.|++.|.+++|.|+....+++++.+...+..||.-||..|||+|.+.|+. .+
T Consensus 5 ~l~~~~~~T~-d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~ 83 (1010)
T KOG1991|consen 5 SLLQIFRATI-DSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIP 83 (1010)
T ss_pred HHHHHHHHhc-CCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCC
Confidence 3555665553 4569999999999999999999999999999886677789999999999999999975 46
Q ss_pred hhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CcHHHHHHHHhhccccc
Q 002041 77 SEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEV 155 (976)
Q Consensus 77 ~~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l~~~~-~~~~~~L~~L~~l~EE~ 155 (976)
+++|..+|+.++..+.+ +|..+|.++..++-.|+...+|++||+ +++.+-..+++.. .+....|..|..|..-.
T Consensus 84 e~dk~~irenIl~~iv~---~p~~iRvql~~~l~~Ii~~D~p~~Wp~--l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~y 158 (1010)
T KOG1991|consen 84 EEDKAVIRENILETIVQ---VPELIRVQLTACLNTIIKADYPEQWPG--LLDKIKNLLQSQDANHVYGALLCLYQLFKTY 158 (1010)
T ss_pred hHHHHHHHHHHHHHHHh---CchHHHHHHHHHHHHHHhcCCcccchh--HHHHHHHHhcCcchhhHHHHHHHHHHHHHHH
Confidence 78999999999999998 799999999999999999999999998 8999888887654 34455666666554432
Q ss_pred ccccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhhh-----HHHHHHHHHHHHhhhccCCCCCcccccchhHHHHHhcC
Q 002041 156 FNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN-----ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSL 230 (976)
Q Consensus 156 ~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~-----~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~~~~~L 230 (976)
++. ..++|.-+...+....|.++++..++++.+ ++.+.++|.|.+.+.+ ++|.. |
T Consensus 159 ---e~k-~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~--~LP~~--------------L 218 (1010)
T KOG1991|consen 159 ---EWK-KDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYY--ELPLE--------------L 218 (1010)
T ss_pred ---hhc-cccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHH--hCCHH--------------h
Confidence 222 245667788888999999999999988764 5788999999999998 47654 5
Q ss_pred CCcchHHHHHHHHHHHhhhhccCC--CCCccCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHHH--
Q 002041 231 HSEILSEASVNVISELIHYSAAGS--SGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVEL-- 306 (976)
Q Consensus 231 ~~~~~~~~a~~~l~~ii~~~~~~~--~~~~~~~~~~i~~l~~~v~~l~~~~~~~~~d~e~~~~~~~l~~~~~~~~~~~-- 306 (976)
.+++.+..|++.+..|++++-+.. +.|+++ ..-.||.-. ..+..+.+.|+|..+|......
T Consensus 219 ~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~-----R~~~~wwK~----------KKWa~~~L~Rlf~Ryg~~~~~~~~ 283 (1010)
T KOG1991|consen 219 SAPETFTSWMELFLSILNRPVPVEVLSLDPED-----RSSWPWWKC----------KKWALHILNRLFERYGSPSLVVPE 283 (1010)
T ss_pred hCchhHHHHHHHHHHHHcCCCChhcccCChhh-----cccccchhh----------HHHHHHHHHHHHHHhCCccccchh
Confidence 677888999999999998764321 111111 222333210 0234566777777776643211
Q ss_pred ---HhcC--CchhHHHHHHHHhhccC------CCcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHhhHH
Q 002041 307 ---IATG--SDESMLIVHALLEVASH------PEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRS 375 (976)
Q Consensus 307 ---l~~~--~~~~~~ll~~lL~~~~~------~~~~vs~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (976)
+... .+-+..+++..+..+.- -.+.|-..++.| +...++ +...|...+|
T Consensus 284 y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~f---l~~~Vs-----------------~~~twkll~P 343 (1010)
T KOG1991|consen 284 YKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNF---LEQCVS-----------------HASTWKLLKP 343 (1010)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH---HHHhcc-----------------HHHHHHHhhh
Confidence 0000 01123444444444331 134444555555 223332 1357889999
Q ss_pred HHHHHHH-HHHhhccCCC-CCCCCChhhhHHhHhhhhcccccCCccchhhhhhhhhhhHHHHHHhhcChh---HHHHHHH
Q 002041 376 AYESLVS-LVSFRVQYPQ-DYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGD---ATLKILY 450 (976)
Q Consensus 376 ~~~~Ll~-~l~~k~~~p~-d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~---~~l~~l~ 450 (976)
++.-++. +++.-|.|-+ |.+.|++| .+++.+...++-+++.++-+ |..+++..++...|+. .++..++
T Consensus 344 Hl~~ii~~vIFPlmc~~d~deelwe~D-P~EYiR~~~Di~ed~~sp~~------Aa~~~l~~~~~KR~ke~l~k~l~F~~ 416 (1010)
T KOG1991|consen 344 HLQVIIQDVIFPLMCFNDEDEELWEED-PYEYIRKKFDIFEDGYSPDT------AALDFLTTLVSKRGKETLPKILSFIV 416 (1010)
T ss_pred HHHHHHHHhhhhhcCCCcccHHHHhcC-HHHHHHhcCchhcccCCCcH------HHHHHHHHHHHhcchhhhhhHHHHHH
Confidence 9888775 4555666644 44456644 45554444455555555432 3678888888888754 3555566
Q ss_pred HHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcccc--cchHHHh-hh-ccCCCC-cHHHHHHHHHHHHhcHHHHhh
Q 002041 451 IKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEA--EVMPQVM-AL-LPKLPQ-QPQLLQTVCLTIGAYSKWFDA 525 (976)
Q Consensus 451 ~~l~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~~~--~~l~~l~-~~-l~~~~~-~~~v~~t~~~~ig~y~~~~~~ 525 (976)
+.+++....+. +..+.++.|+||+.++++++-+....- ..+..++ ++ +|.+.+ -..+|..+|+++++|++-=.+
T Consensus 417 ~Il~~~~~~~~-~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~ 495 (1010)
T KOG1991|consen 417 DILTRYKEASP-PNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFK 495 (1010)
T ss_pred HHHHhhcccCC-CccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCC
Confidence 66665433322 257899999999999999977765431 2222222 22 244432 468999999999999975555
Q ss_pred CCCCcchHHHHHHHHHcccCC-Ch-HHHHHHHHHHHHHHHHhhhh---hhcCHHHHHHHHHHHhhccCCCCCCHHhHHHH
Q 002041 526 ASSDPSILASVLSILTSGMST-SE-DTAAAAALAFRHICDDCRKK---LCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHL 600 (976)
Q Consensus 526 ~p~~~~~l~~~l~~l~~~l~~-~~-~v~~~A~~al~~l~~~~~~~---L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l 600 (976)
+|. .+..++....++|.+ ++ .|+..|+.|++.|...|... +.+|++++|+.+..+.+. ...++...+
T Consensus 496 d~~---~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne-----~End~Lt~v 567 (1010)
T KOG1991|consen 496 DPN---NLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNE-----VENDDLTNV 567 (1010)
T ss_pred ChH---HHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHh-----cchhHHHHH
Confidence 665 888999999898874 33 69999999999999998854 889999999999998864 567778888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCccc--ccCcchhhhHHHHHHHHhhhcCC-cccHHHHHHHH
Q 002041 601 VEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQ--KKHPRDLTVHIDRFAYIFRYVNH-PEAVADAIQRL 677 (976)
Q Consensus 601 ~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~ 677 (976)
+|.+ +...+ ++..++...+++.+.+...++++.....++ +...-.....|++|+++..++.. |+-..+....+
T Consensus 568 me~i---V~~fs-eElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~ 643 (1010)
T KOG1991|consen 568 MEKI---VCKFS-EELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIV 643 (1010)
T ss_pred HHHH---HHHHH-HhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 8877 56654 577788899999999999999986221111 11111233567888888877754 43444445566
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCC---ccHHHHHHHHHHHhCCCCcc-
Q 002041 678 WPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQ---PCFLYLSSEVIKIFGSDPSC- 753 (976)
Q Consensus 678 ~~~l~~ll~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~---~~~L~l~~~li~~~~~~~~~- 753 (976)
.|++..++.... .++.|.+|.+...+ +...+.+.|.+=.+++.+.+.|..... ..++.++...|. +|..+-.
T Consensus 644 l~vi~~iL~~~i--~dfyeE~~ei~~~~-t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt-~g~~~~~s 719 (1010)
T KOG1991|consen 644 LPVIGFILKNDI--TDFYEELLEIVSSL-TFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVT-YGTPSLLS 719 (1010)
T ss_pred HHHHHHHHHHhh--HHHHHHHHHHHhhh-hhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhee-eCchhhhc
Confidence 777777776533 36777777776532 223333444444455555555555332 222333333332 3332111
Q ss_pred hHHHHHHHHHHHHHHHhhhcCcccCCCCCccHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHhccc--CCchhHHHH
Q 002041 754 ASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITV--QHREASNSI 831 (976)
Q Consensus 754 ~~~l~~~~~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~~~~l~~~~~~~~~~l~~--~~~~~~~~~ 831 (976)
.+...+++-.++. ..+.+. -.+++|. +.-+.++..++..|-+ .+ +..++.++..++..++. ........+
T Consensus 720 ~~~y~~il~~i~~---~~l~~e--~~~D~d~-~~a~kLle~iiL~~kg-~~-dq~iplf~~~a~~~l~~~~e~s~~~~~~ 791 (1010)
T KOG1991|consen 720 NPDYLQILLEIIK---KVLTSE--NGEDSDC-ESACKLLEVIILNCKG-LL-DQYIPLFLELALSRLTREVETSELRVML 791 (1010)
T ss_pred cchHHHHHHHHHH---HHHcCC--CCchHHH-HHHHHHHHHHHHHhcC-cH-hhHhHHHHHHHHHHHhccccchHHHHHH
Confidence 1111122222222 223321 2334443 3346777777777777 22 23566667776666654 222222333
Q ss_pred HHHHHHhhcccCCC----------C----chhhHHHHHHHHhhchHHHHH----HHHHH-cccCCCCCCcccHHHHHHHH
Q 002041 832 LTFLSDIFDLAKSC----------K----GEEFLSVRDSVIIPRGASITR----ILIAS-LTGALPSSRLETVTYALLAL 892 (976)
Q Consensus 832 ~~fl~~l~~~~~~~----------~----~~~~~~~~~~~~~~~g~~lv~----~ll~~-l~~~~~~~~~~~~~~~L~~l 892 (976)
++...+.+= .++. - .+-|.+.++++...|...+.- +++.- =.+.+|...+..++.++..+
T Consensus 792 leVvinaly-ynP~ltL~iLe~~~~~~~ff~~wf~~~~~~~~~HDkKlcvL~l~tli~l~~~~~~~~e~l~~l~~~lv~L 870 (1010)
T KOG1991|consen 792 LEVVINALY-YNPKLTLGILENQGFLNNFFTLWFQFINQFKKVHDKKLCVLGLLTLISLGQDPQLPSEVLGQLGPALVEL 870 (1010)
T ss_pred HHHHHHHHH-cCcHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHH
Confidence 333332221 1110 0 112223344444444444311 11111 12344555566677777777
Q ss_pred HHHhhHHHHH
Q 002041 893 TRAYGVRSLE 902 (976)
Q Consensus 893 ~~~~~~~~~~ 902 (976)
....|...+.
T Consensus 871 ~~~Lp~ala~ 880 (1010)
T KOG1991|consen 871 LLSLPEALAE 880 (1010)
T ss_pred HHHHHHHHHH
Confidence 7777755443
No 8
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-28 Score=289.44 Aligned_cols=899 Identities=14% Similarity=0.170 Sum_probs=555.5
Q ss_pred HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHH
Q 002041 4 QNTVKEALNALYHH-PDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRG 82 (976)
Q Consensus 4 ~~~v~~al~~ly~~-~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~~~ 82 (976)
...+.+|+...+++ ++.+.|.+|+++|.+||..+++|..|..+|.. +++++++|||.+.|.+.|+.+|+.+|.+++.+
T Consensus 9 ~~~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~-s~~~~~k~f~Lqlle~vik~~W~~~~~~~r~g 87 (1041)
T KOG2020|consen 9 DSELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKL-STNPILKYFALQLLENVIKFRWNSLPVEERVG 87 (1041)
T ss_pred HHHHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhc-cCCchhheeeHHHHHHHHHHhcccCCccccHH
Confidence 34566777776666 78899999999999999999999999999987 57889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC------CChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCcHHHHHHHHhhcccccc
Q 002041 83 LQDSLNTLLKKFHK------GPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVF 156 (976)
Q Consensus 83 lr~~Ll~~l~~~~~------~~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l~~~~~~~~~~L~~L~~l~EE~~ 156 (976)
+|++++..+..... ..+.+++||+..+..++++.+|..||+ +++++.+....++..++..+.+++.|.||+.
T Consensus 88 lk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~--~i~dl~~~s~~s~~~~el~m~Il~lLsEdvf 165 (1041)
T KOG2020|consen 88 LKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPT--FIPDLAQSSKTSETVCELSMIILLLLSEEVF 165 (1041)
T ss_pred HHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcch--hhhhHHHHhhcCcccchHHHHHHHHHHHHHh
Confidence 99999998876432 246899999999999999999999999 9999999988888889999999999999999
Q ss_pred cccccCChhHHHH-HHHHHHHhHHHHHHHHHHhhhhh--HHHHHH---HHHHHHhhhccCCCCCcccccchhHHHHH-hc
Q 002041 157 NYKIAARPERRRQ-FEKELTSQMEVALSTLTACLHIN--ELKEQV---LEAFASWLRLKHRIPGSVLASHPLVLTAL-SS 229 (976)
Q Consensus 157 ~~~~~~~~~~r~~-l~~~l~~~~~~vl~~l~~~l~~~--~~~~~~---l~~~~sWi~~~~~i~~~~l~~~~l~~~~~-~~ 229 (976)
.........+|.. ++..+...+..+.+++....... ++..++ +.+|.+||+++ .+.....+..++ ..
T Consensus 166 ~~ss~~~~q~~~~il~~~~~~~f~~i~~l~~~~~~~a~~~~~~atl~tl~~fl~wip~~------~I~~tn~l~~~l~~~ 239 (1041)
T KOG2020|consen 166 DFSSSELTQQKIIILKNLLENEFQQIFTLCSYIKEKANSELLSATLETLLRFLEWIPLG------YIFETNILELLLNKF 239 (1041)
T ss_pred cccchHHHhhhHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcccHH------HHHHhhhHHHHHHhc
Confidence 7643322333333 44445555666777766655442 344444 44555666654 443333455444 55
Q ss_pred CCCcchHHHHHHHHHHHhhhhccCCCCCccCchhHHHHHHHH------HHhhHHHhhh-ccCCH-HHHHHHHHHHHHHhh
Q 002041 230 LHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQ------IMSLKAHLTD-SSKDE-EDVKAIARLFADMGD 301 (976)
Q Consensus 230 L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~------v~~l~~~~~~-~~~d~-e~~~~~~~l~~~~~~ 301 (976)
++.++.+..|++|+.++++....... ....++.+..... .....+.... ...|. .+.+.++..++.+++
T Consensus 240 ln~~~~r~~al~CL~ei~s~~~~~~~---~~~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~dq~~fi~~l~~~l~~f~~ 316 (1041)
T KOG2020|consen 240 LNAPELRNNALSCLTELLSRKRSIYE---RKTVPMFNLTIYQLRSIPQDLDIPEVYSSLSDEDQDSFIEKLAQFLSLFFE 316 (1041)
T ss_pred cchHHHHHHHHHHHHHHHhccccchh---HHhHHHHHHHHHHHHHhhhhhchhhhhhcccHhHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999987643210 0112233222111 1112222211 13344 678999999999999
Q ss_pred HHHHHHhcCCch---hHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhccc-ccccccCcc-cc-hH-HHHHHHHHhhH
Q 002041 302 SYVELIATGSDE---SMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKR-DSYISFGNE-AS-AE-AERSRRLQVFR 374 (976)
Q Consensus 302 ~~~~~l~~~~~~---~~~ll~~lL~~~~~~~~~vs~~~l~fW~~l~~~l~~~-~~~~~~~~~-~~-~~-~~~~~~~~~~~ 374 (976)
.+..++...... .......++..+..++.++...+++.|..+..+++.. ..+...+.. +. .+ .+-+-+.+.|.
T Consensus 317 ~~~~lle~~~~~~~~~~~~~~~li~i~~~~~se~~~~~ld~W~~lv~~l~~~~~~ll~~s~~~~~~~~~~ri~~rk~~y~ 396 (1041)
T KOG2020|consen 317 QHIALLESSLSQRPVLLEALLELILISTIEPSEIFKICLDYWNKLVADLYYNKPPLLQLSTTLPSISDYSRIDFRKSIYQ 396 (1041)
T ss_pred HHHHHHcCchhhhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhhhcccccccccccccccccchhccchHHHHHH
Confidence 999988662222 2223333344444445555555999999999886543 112110000 00 00 00012356788
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhhcccccCCccchhhhhhhhhhhHHHHHHhhcChhHHHHHHHHHHH
Q 002041 375 SAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFV 454 (976)
Q Consensus 375 ~~~~~Ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~ 454 (976)
.++.++-...+.+|.-|++.--.+.+.-+.+++++.+ .+. ..+-..+.+.+......-+ ...-..+..++.
T Consensus 397 ~~~~~~r~l~l~~m~~Pe~vlive~~~~~~vre~~~~--~~~------~~ly~~~~e~l~~~~~L~~-~~t~~~~~~kl~ 467 (1041)
T KOG2020|consen 397 EFLSKLRLLRLERMAKPEEVLIVENEQGEIVREFMKD--HDF------ITLYPVLRETLVYLLHLDV-VDTEKIMTEKLA 467 (1041)
T ss_pred HHHHHHHHHHHHHhcCchheeEEechHHHHHHHhccC--cch------hhhhHHHHHHHHHHHHhhh-hhhhhhhhHhHH
Confidence 8888888888999999986433333444555555543 100 0111124444444333333 323333444444
Q ss_pred HhHhhcCCCCCCcchhhHHHHHHHHhhcccCccc-ccchHHHhh----hcc--CCC-CcHHHHHHHHHHHHhcHHHHhhC
Q 002041 455 EGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE-AEVMPQVMA----LLP--KLP-QQPQLLQTVCLTIGAYSKWFDAA 526 (976)
Q Consensus 455 ~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~~-~~~l~~l~~----~l~--~~~-~~~~v~~t~~~~ig~y~~~~~~~ 526 (976)
..+. +..++|..+---+|++++++..+.+.. ..++..++. .+. ..+ ....+....+.++|.|..|+..|
T Consensus 468 ~~l~---~~~~~~~~ln~l~~ai~sisg~~~e~~e~k~~~~v~~d~l~l~E~~~~kdn~avi~~Ni~~vv~q~p~Fl~~h 544 (1041)
T KOG2020|consen 468 IQLD---GDEWSLHNLNRLCWAIGSISGRMLEDMEKKFFVAVIRDLLNLCERKRGKDNKAVIASNIMYVVGQYPRFLKAH 544 (1041)
T ss_pred HHhh---HHHHhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHhcccchHHHHH
Confidence 3332 125789999999999998887655432 222222222 221 112 23567788999999999999999
Q ss_pred CCCcchHHHHHHHHHcccCCCh-HHHHHHHHHHHHHHHHhhhhhh--------cCHHHHHHHHHHHhhccCCCCCCHHhH
Q 002041 527 SSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLC--------GYLDGLYNVYRTAVNGEGSLKVSAEDS 597 (976)
Q Consensus 527 p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~L~--------~~l~~ll~~~~~~~~~~~~~~l~~~~~ 597 (976)
-. +++++...+++.++... .++.+||..|.+++..|+.+.. |+.+.++.-+..... .+.+..+
T Consensus 545 ~~---~Lkt~~~~L~efmhe~h~gvqdmacd~F~~ii~~~~~~fv~~~~~e~~~fv~~~~~~l~~i~~-----~l~~~q~ 616 (1041)
T KOG2020|consen 545 WK---FLKTVVHKLFEFMHETHEGVQDMACDTFIKIIQKCKRHFVITQLGETKPFVGELLLNLTAITE-----DLQPQQR 616 (1041)
T ss_pred HH---HHHHHHHHHHHHHhhhhHHHHhhhHHHHHHHHHhhhhhheeecccccccchHHHhhcccchhc-----CchHHHH
Confidence 54 88888888888887654 4899999999999999998532 566655555444443 3678889
Q ss_pred HHHHHHHHHHHhc-CChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccc----cCcchhhhHHHHHHHHhhhcCCc-----
Q 002041 598 LHLVEALSMVITE-LPQVDAKKALEMLCLPVVTPLQEIINQGPEILQK----KHPRDLTVHIDRFAYIFRYVNHP----- 667 (976)
Q Consensus 598 ~~l~eai~~vi~~-~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~----~~~~~~~~~l~~l~~~~~~~~~~----- 667 (976)
...++++|.++.+ .+++....+...+..-.-..+.+++.++..+.+. ...+.+...+...+.....++.+
T Consensus 617 ~~~~~al~~~V~~~~~~~~~~~~~~~~~vl~~~~~~nii~~~~~~~~~l~~~~~v~s~~~i~~~~~~~~~sl~~~f~~~~ 696 (1041)
T KOG2020|consen 617 HTFYEALGLMVSAEIDPAKAERLQSKLMVLPNRAWINIILQARCNDEILKLLETVKSLLNILKTNSRALTSLGSTFVPQL 696 (1041)
T ss_pred HHHHHHHHHHHHHhCCHhhHHHHHhcccccchhhhcchhhcCcccHHhhcchHHHHHHHHHHHhHHHHHHhcCccccccc
Confidence 9999999965554 5555656666665555555566655554433221 01122223445555555555432
Q ss_pred ----ccHHHHHHHHhHHHHHHHHhhc---CCHHHHHHHHHHHH----HHHHHhh------hhhhhhHHHHHHHHHHHHhh
Q 002041 668 ----EAVADAIQRLWPIFKAIFDIRA---WDMRTMESLCRACK----YAVRTSK------RFMGITIGAILEEIQGLYQQ 730 (976)
Q Consensus 668 ----~~~~~~~~~~~~~l~~ll~~~~---~~~~v~e~~~~~~~----~~~~~~~------~~~~~~l~~l~~~l~~~~~~ 730 (976)
.....++....+.+....+.-. .-.+.+.....+-+ .+....+ .+...++|+++....-.|..
T Consensus 697 ~~~~~d~~~l~~~~s~~v~~~~~~~~~~~t~~~~v~~~~svk~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~ 776 (1041)
T KOG2020|consen 697 GKIYLDMLQLYIKQSELVSINVTAGGSEKTKTPFVKTLRSVKREILKLLETFISKSEQRDLYLLMLVPPLLDAVLFDYLD 776 (1041)
T ss_pred ccccHHHHHHHHHhcccccHHHhcccccccccHHHHHHHHHHHHHHHHHHhccCcccchhHHHHhhhhHHHHHHHHHHHc
Confidence 1222223222222222221111 11111111111111 1111111 12334566666655544543
Q ss_pred ----cCCccHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhhhcCcccCCCCCccHHHHHHHHHHHHhhCCCccc--
Q 002041 731 ----HQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFI-- 804 (976)
Q Consensus 731 ----~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~-- 804 (976)
.+.+..+.+-..++.++|+- +...+...+.+++.+.+...+ .+..+.||....||.++..+...++..+.
T Consensus 777 nvPd~r~~~vl~l~~~iv~~Lg~~--i~~~~~~i~~~v~~c~l~m~~--~d~qe~~e~~~~f~~lle~l~~~~~~~~~~l 852 (1041)
T KOG2020|consen 777 NVPDYRENEVLSLNATIVPKLGEF--IPAELPLINIAVLECTLEMIN--KDFQEYPEHRLNFLLLLEALLLFCFPAFSEL 852 (1041)
T ss_pred cCcchhcchHHHhhhhhhhhhhhH--hhhhccHHHHHHHhhhhhccc--cccccchHHHHHHHHHHHHHHHhhhHHHHcC
Confidence 23455666666777777754 333333445555566655444 56789999999999999999988777664
Q ss_pred CcCChHHHHHHHHHhcccCCchhHHHHHHHHHHhhcccCCCCchhhHHHHHHHHhhchHHHHHHHHHHcccCCCCCCccc
Q 002041 805 PSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLET 884 (976)
Q Consensus 805 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~l~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~~~~~~~~ 884 (976)
+++.+..+++.+..+.....|....+.++.+..+.......+ ...+.+++.++..+....+..+.+....+.+..
T Consensus 853 ~~~~~~~~~~si~~~f~h~~r~i~~~~l~~l~~l~k~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~~ 927 (1041)
T KOG2020|consen 853 PADQVKLVSDSIVWAFHHTMRNIAENGLNILLELLKNLAEME-----KFANAFYQTYFLSLLQKIIAVLTDTDHKAGFTK 927 (1041)
T ss_pred CchhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHHhccchhhcchH
Confidence 356677777887777777778888888888888875432111 235667777777777766666655554444444
Q ss_pred HHHHHHHHHHHhhHH-HHHHH-----------------HHHH-hhCCCCCCCHHHHHHHHHHHHHHhcCCCchhhhHHHH
Q 002041 885 VTYALLALTRAYGVR-SLEWA-----------------KESV-SLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVE 945 (976)
Q Consensus 885 ~~~~L~~l~~~~~~~-~~~wl-----------------~~~l-~~~p~~~~~~~~k~~f~~~l~~~~~~~~~~~~~~~l~ 945 (976)
-+-.+..+.+..-+. +.+|+ ...+ +.+| +.+.++.+.|...++... ++...+++.++
T Consensus 928 ~~L~~~~l~~l~~~~~~~~~l~~~~~v~~n~~~L~e~i~~~l~~~f~--~~~~~~v~~~~~~~~~~~--~~~~~~k~~~~ 1003 (1041)
T KOG2020|consen 928 QVLKLQFLFRLVESAKLHTPLLQGNVVHGNQAFLREYIYGLLRPAFP--NLTDEQVRAFDIGLFDEC--KDVSPFKDHVR 1003 (1041)
T ss_pred HHHHHHHHHHHHHhhhHHHhhccccccchHHHHHHHHHHHhhhhhch--hhchHHHHHHhHHHHHHh--cccchhhcchh
Confidence 333333333222111 22222 2222 3455 457788888888888754 55666777777
Q ss_pred HH
Q 002041 946 EL 947 (976)
Q Consensus 946 ~F 947 (976)
|+
T Consensus 1004 d~ 1005 (1041)
T KOG2020|consen 1004 DV 1005 (1041)
T ss_pred hH
Confidence 73
No 9
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-27 Score=261.50 Aligned_cols=655 Identities=15% Similarity=0.177 Sum_probs=420.5
Q ss_pred CCCHHHHHHHHHHHHHHhcC--hhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhh-----------cCCCCCChhhHHHH
Q 002041 17 HPDDAVRMQADRWLQDFQHT--IDAWQVADNLLHDATSNLETLIFCSQTLRSKVQ-----------RDVEELPSEAVRGL 83 (976)
Q Consensus 17 ~~d~~~r~~A~~~L~~~q~s--~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~-----------~~w~~l~~~~~~~l 83 (976)
++|+..|++|+++|.+++.+ |.......+.|.+...++..|..|+.+|||.+. .+|..++.|.++.+
T Consensus 12 SpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqV 91 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQV 91 (859)
T ss_pred CCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 67999999999999999987 444555667776666788999999999999663 45999999999999
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhh-ccccccCCccchHHHHHhcCCCCC--cHHHHHHHHhhcccccccccc
Q 002041 84 QDSLNTLLKKFHKGPPKVRTQISIAVAALAVH-ISAEDWGGGGIVNWLRDEMNSHPE--FVPGFLELLTVLPEEVFNYKI 160 (976)
Q Consensus 84 r~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~-~~~~~W~~~~~~~~l~~~l~~~~~--~~~~~L~~L~~l~EE~~~~~~ 160 (976)
|..++..|.. ..+...+--++++|.++.- .+.+.||+ ++..+....+..+. .....|+.+..++|++...
T Consensus 92 K~~il~tL~~---~ep~~~s~Aaq~va~IA~~ElP~n~wp~--li~~lv~nv~~~~~~~~k~~slealGyice~i~pe-- 164 (859)
T KOG1241|consen 92 KNNILRTLGS---PEPRRPSSAAQCVAAIACIELPQNQWPE--LIVTLVSNVGEEQASMVKESSLEALGYICEDIDPE-- 164 (859)
T ss_pred HHHHHHHcCC---CCCCccchHHHHHHHHHHhhCchhhCHH--HHHHHHHhcccccchHHHHHHHHHHHHHHccCCHH--
Confidence 9999999875 2334455577888888874 45679999 99999988875443 2467899999999987631
Q ss_pred cCChhHHHHHHHHHHHhHHHHHHHHHHhhhh----hHHHHHHHHHHHHhhhccC-CCCCcccccchhHHHHHhcCCCc--
Q 002041 161 AARPERRRQFEKELTSQMEVALSTLTACLHI----NELKEQVLEAFASWLRLKH-RIPGSVLASHPLVLTALSSLHSE-- 233 (976)
Q Consensus 161 ~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~----~~~~~~~l~~~~sWi~~~~-~i~~~~l~~~~l~~~~~~~L~~~-- 233 (976)
.+.++...|+.-+.+.... ..++-.+++|+..-+.+.. ++..+ ....-+++.+++.-+.|
T Consensus 165 ------------vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E-~ern~iMqvvcEatq~~d~ 231 (859)
T KOG1241|consen 165 ------------VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNE-MERNYIMQVVCEATQSPDE 231 (859)
T ss_pred ------------HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccH-hhhceeeeeeeecccCCcH
Confidence 2445566666544444443 2588889999887666532 11111 11122333333333322
Q ss_pred chHHHHHHHHHHHhhhhccCCCCCccCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHHHHhcCCch
Q 002041 234 ILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDE 313 (976)
Q Consensus 234 ~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~v~~l~~~~~~~~~d~e~~~~~~~l~~~~~~~~~~~l~~~~~~ 313 (976)
++..+|..||+.|++ -+-+...+++
T Consensus 232 ~i~~aa~~ClvkIm~-------------------------------------------------LyY~~m~~yM------ 256 (859)
T KOG1241|consen 232 EIQVAAFQCLVKIMS-------------------------------------------------LYYEFMEPYM------ 256 (859)
T ss_pred HHHHHHHHHHHHHHH-------------------------------------------------HHHHHHHHHH------
Confidence 333444444444442 2222222222
Q ss_pred hHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhccc-ccccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccC-C
Q 002041 314 SMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKR-DSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQY-P 391 (976)
Q Consensus 314 ~~~ll~~lL~~~~~~~~~vs~~~l~fW~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~-p 391 (976)
...++...+.-+..++++|...+++||+.++++-.+. ..| ++....+ ..+......+.-+.-+++++++.+.. .
T Consensus 257 ~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~---~e~~d~~-~~p~~~~fa~~a~~~v~P~Ll~~L~kqd 332 (859)
T KOG1241|consen 257 EQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEY---GEAVDQG-LPPSSKYFARQALQDVVPVLLELLTKQD 332 (859)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhcC-CCchhhHHHHHHHhHhhHHHHHHHHhCC
Confidence 1234555556666788999999999999888752210 000 0000000 00111223344556677777777765 3
Q ss_pred CC--CCCCChhhhHHhHhhhhcccccCCccchhhhhhhhhhhHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcch
Q 002041 392 QD--YQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRP 469 (976)
Q Consensus 392 ~d--~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~ 469 (976)
+| .++|+. .++.+-+|+=.....| |+++.++..-+.+.+. +++|+.
T Consensus 333 e~~d~DdWnp--------------------------~kAAg~CL~l~A~~~~-D~Iv~~Vl~Fiee~i~-----~pdwr~ 380 (859)
T KOG1241|consen 333 EDDDDDDWNP--------------------------AKAAGVCLMLFAQCVG-DDIVPHVLPFIEENIQ-----NPDWRN 380 (859)
T ss_pred CCcccccCcH--------------------------HHHHHHHHHHHHHHhc-ccchhhhHHHHHHhcC-----Ccchhh
Confidence 32 122321 1124555555555566 5677777777777653 689999
Q ss_pred hhHHHHHHHHhhcccCccc-ccchHHHhhhccCC--CCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCC
Q 002041 470 AEAALFCIRAISTYVSVVE-AEVMPQVMALLPKL--PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST 546 (976)
Q Consensus 470 ~Ea~L~~l~~i~e~~~~~~-~~~l~~l~~~l~~~--~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~ 546 (976)
+|++..+++++-++-.... ...+++.++.+..+ .+.-.++.|+.|++||.++++..--....++.+.++.+..|+++
T Consensus 381 reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D 460 (859)
T KOG1241|consen 381 REAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND 460 (859)
T ss_pred hhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh
Confidence 9999999999988755442 22333333332221 22457789999999999998864211124889999999999987
Q ss_pred ChHHHHHHHHHHHHHHHHhhhhh---------hcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHH
Q 002041 547 SEDTAAAAALAFRHICDDCRKKL---------CGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAK 617 (976)
Q Consensus 547 ~~~v~~~A~~al~~l~~~~~~~L---------~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~ 617 (976)
..++...+|.||..|++.|.... .|+.+.|++.+.......+ .-...-|...|++++-+|..-| +...
T Consensus 461 ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~d--gnqsNLR~AAYeALmElIk~st-~~vy 537 (859)
T KOG1241|consen 461 EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRAD--GNQSNLRSAAYEALMELIKNST-DDVY 537 (859)
T ss_pred CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccc--cchhhHHHHHHHHHHHHHHcCc-HHHH
Confidence 55599999999999999876533 2456666666655543321 1245678999999999999876 4556
Q ss_pred HHHHHhhhHHHHHHHHHHhcCCCc-ccccCcchhhh-HHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcCCHHHH
Q 002041 618 KALEMLCLPVVTPLQEIINQGPEI-LQKKHPRDLTV-HIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTM 695 (976)
Q Consensus 618 ~~l~~ll~p~~~~l~~~~~~~~~~-~~~~~~~~~~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~v~ 695 (976)
+.+..+..-++.+|.+.++....+ .++.+..++.. ...+|+.+.+.+. +...++-.+++..+.++++. +.+.-+-
T Consensus 538 ~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~--~~~~~~~d~iM~lflri~~s-~~s~~v~ 614 (859)
T KOG1241|consen 538 PMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVG--SDIREVSDQIMGLFLRIFES-KRSAVVH 614 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHcc--ccchhHHHHHHHHHHHHHcC-Cccccch
Confidence 778888889999999999833211 11111222222 2366777777654 25666778999999999988 5666677
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcC----CccHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhh
Q 002041 696 ESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQ----QPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCL 771 (976)
Q Consensus 696 e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~----~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~ 771 (976)
|.+..++...+..+|+.|..++|.+.+++..+.++.. +.....+.+.+....+.+ +.+..+.+...++ +.
T Consensus 615 e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~--i~py~d~~mt~Lv----q~ 688 (859)
T KOG1241|consen 615 EEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDD--ILPYCDELMTVLV----QC 688 (859)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHH----HH
Confidence 8888888888889999999999999999888775421 234456666666665555 4444444433332 23
Q ss_pred hcCcccCCCCCccHHHHHHHHHHHHh
Q 002041 772 LTSIEEFTSRPDVADDCFLLASRCIR 797 (976)
Q Consensus 772 l~~~~~~~~~pD~~~~~f~l~~~~~~ 797 (976)
|. ...-|-++....+...+.|..
T Consensus 689 Ls---s~~~hR~vKP~IlS~FgDIAl 711 (859)
T KOG1241|consen 689 LS---SPNLHRNVKPAILSVFGDIAL 711 (859)
T ss_pred cc---CccccccccchHHHHHHHHHH
Confidence 33 344455555555555555544
No 10
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.93 E-value=1.1e-19 Score=193.61 Aligned_cols=649 Identities=14% Similarity=0.131 Sum_probs=379.5
Q ss_pred CCCHHHHHHHHHHHHHHhcChhH--HHHHHHHhhcCCCchHHHHHHHHHHHHHhh-----------cCCCCCChhhHHHH
Q 002041 17 HPDDAVRMQADRWLQDFQHTIDA--WQVADNLLHDATSNLETLIFCSQTLRSKVQ-----------RDVEELPSEAVRGL 83 (976)
Q Consensus 17 ~~d~~~r~~A~~~L~~~q~s~~a--w~~~~~lL~~~~~~~~v~ffaa~~L~~ki~-----------~~w~~l~~~~~~~l 83 (976)
+||++.|..|+..|.++++.+-. -.+..+.|.+...+++.|..|+.+|+|-+. .+|..++.|.++.+
T Consensus 16 spD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qv 95 (858)
T COG5215 16 SPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQV 95 (858)
T ss_pred CCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHH
Confidence 67999999999999999976543 223344554546788999999999999764 35999999999999
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc-cccccCCccchHHHHHhcCCC-CC-cHHHHHHHHhhcccccccccc
Q 002041 84 QDSLNTLLKKFHKGPPKVRTQISIAVAALAVHI-SAEDWGGGGIVNWLRDEMNSH-PE-FVPGFLELLTVLPEEVFNYKI 160 (976)
Q Consensus 84 r~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~-~~~~W~~~~~~~~l~~~l~~~-~~-~~~~~L~~L~~l~EE~~~~~~ 160 (976)
|...++.|.+ ..+..-+--+..+|+++... +...||+ ++..+....+.. |. ...-.+.++...+|-...
T Consensus 96 K~~al~aL~s---~epr~~~~Aaql~aaIA~~Elp~~~wp~--lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P--- 167 (858)
T COG5215 96 KGMALRALKS---PEPRFCTMAAQLLAAIARMELPNSLWPG--LMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP--- 167 (858)
T ss_pred HHHHHHHhcC---CccHHHHHHHHHHHHHHHhhCccccchH--HHHHHHHhccccCchHhHHHHHHHHHHHhhccCH---
Confidence 9999999877 33344555677788877644 5578998 888888777643 32 223456677766664332
Q ss_pred cCChhHHHHHHHHHHHhHHH-HHHHHHHhhhhh---HHHHHHHHHHHHhhhccC-CCCCcccccchhHHHHHhcCCC--c
Q 002041 161 AARPERRRQFEKELTSQMEV-ALSTLTACLHIN---ELKEQVLEAFASWLRLKH-RIPGSVLASHPLVLTALSSLHS--E 233 (976)
Q Consensus 161 ~~~~~~r~~l~~~l~~~~~~-vl~~l~~~l~~~---~~~~~~l~~~~sWi~~~~-~i~~~~l~~~~l~~~~~~~L~~--~ 233 (976)
+ .+.+.... ++.+....+..+ .++..+|+|+..-+.+.. .+..+ -...-+++.+++.-+. .
T Consensus 168 ----e-------~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E-~erNy~mqvvceatq~~d~ 235 (858)
T COG5215 168 ----E-------DLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYE-EERNYFMQVVCEATQGNDE 235 (858)
T ss_pred ----H-------HHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcch-hhhchhheeeehhccCCcH
Confidence 1 12222222 234444443332 577888999765322211 11000 0001112222221111 1
Q ss_pred chHHHHHHHHHHHhhhhccCCCCCccCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHHHHhcCCch
Q 002041 234 ILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDE 313 (976)
Q Consensus 234 ~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~v~~l~~~~~~~~~d~e~~~~~~~l~~~~~~~~~~~l~~~~~~ 313 (976)
++.-+|.. .++|+..-+-.....++.
T Consensus 236 e~q~aafg-------------------------------------------------Cl~kim~LyY~fm~~ymE----- 261 (858)
T COG5215 236 ELQHAAFG-------------------------------------------------CLNKIMMLYYKFMQSYME----- 261 (858)
T ss_pred HHHHHHHH-------------------------------------------------HHHHHHHHHHHHHHHHHH-----
Confidence 11122222 222222222111112221
Q ss_pred hHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhccc---ccccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccC
Q 002041 314 SMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKR---DSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQY 390 (976)
Q Consensus 314 ~~~ll~~lL~~~~~~~~~vs~~~l~fW~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~ 390 (976)
..+..+..+.+..+.++|...+++||+.++++--+. .+|. ...|..+ +.=.....++++..|+..+.++
T Consensus 262 -~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~--pe~p~qn--~~fa~aav~dvlP~lL~LL~~q--- 333 (858)
T COG5215 262 -NALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYL--PEVPAQN--HGFARAAVADVLPELLSLLEKQ--- 333 (858)
T ss_pred -HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhc--ccCchhh--cchHHHHHHHHHHHHHHHHHhc---
Confidence 234555667777899999999999998888752211 0111 1111100 0001112233444444333321
Q ss_pred CCCC--CCCChhhhHHhHhhhhcccccCCccchhhhhhhhhhhHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcc
Q 002041 391 PQDY--QDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWR 468 (976)
Q Consensus 391 p~d~--~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~ 468 (976)
.+|+ ++|+.. .++.-++++|.+..+| .++.-+..-+.+.+. +.+|.
T Consensus 334 ~ed~~~DdWn~s---------------maA~sCLqlfaq~~gd------------~i~~pVl~FvEqni~-----~~~w~ 381 (858)
T COG5215 334 GEDYYGDDWNPS---------------MAASSCLQLFAQLKGD------------KIMRPVLGFVEQNIR-----SESWA 381 (858)
T ss_pred CCCccccccchh---------------hhHHHHHHHHHHHhhh------------HhHHHHHHHHHHhcc-----Cchhh
Confidence 2332 234311 1222334444444444 343333333333332 57899
Q ss_pred hhhHHHHHHHHhhcccCccc-ccchHHHhhhccCCC--CcHHHHHHHHHHHHhcHHHHhh--CCCCcchHHHHHHHHHcc
Q 002041 469 PAEAALFCIRAISTYVSVVE-AEVMPQVMALLPKLP--QQPQLLQTVCLTIGAYSKWFDA--ASSDPSILASVLSILTSG 543 (976)
Q Consensus 469 ~~Ea~L~~l~~i~e~~~~~~-~~~l~~l~~~l~~~~--~~~~v~~t~~~~ig~y~~~~~~--~p~~~~~l~~~l~~l~~~ 543 (976)
.+|++..++|++-++=.+.. ..++++.+..+...- +.-.+..|+.|.+|+.++++.. +|. ..++..++..+.|
T Consensus 382 nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~--~Hl~~~vsa~liG 459 (858)
T COG5215 382 NREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPC--GHLVLEVSASLIG 459 (858)
T ss_pred hHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCcc--ccccHHHHHHHhh
Confidence 99999999999987644332 355666666554332 2347899999999999998876 565 4788888888888
Q ss_pred cCCChHHHHHHHHHHHHHHHHhhhh-------hhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHH
Q 002041 544 MSTSEDTAAAAALAFRHICDDCRKK-------LCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDA 616 (976)
Q Consensus 544 l~~~~~v~~~A~~al~~l~~~~~~~-------L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~ 616 (976)
+.+...+...++.++.+|++...+. +.++-+.+++.+....+. ..-....|..+++++|.+|.--|+ ..
T Consensus 460 l~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~---~~Ne~n~R~s~fsaLgtli~~~~d-~V 535 (858)
T COG5215 460 LMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTEL---ALNESNLRVSLFSALGTLILICPD-AV 535 (858)
T ss_pred hhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHh---hccchhHHHHHHHHHHHHHhhcch-hH
Confidence 7665448899999999999876542 334555555555443322 123466799999999999988764 34
Q ss_pred HHHHHHhhhHHHHHHHHHHhcCCCc---ccccCcchh-hhHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcCCH
Q 002041 617 KKALEMLCLPVVTPLQEIINQGPEI---LQKKHPRDL-TVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDM 692 (976)
Q Consensus 617 ~~~l~~ll~p~~~~l~~~~~~~~~~---~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 692 (976)
.+.+..+..-++.++.++++-.... .++....++ ...++.+.++++.- +..+.++-.+++.++-+++++- +..
T Consensus 536 ~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~--~~~ie~v~D~lm~Lf~r~les~-~~t 612 (858)
T COG5215 536 SDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTR--RRDIEDVEDQLMELFIRILEST-KPT 612 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHhcc-CCc
Confidence 4666677788888888887643311 111111121 22467777777754 2233344468888998988875 223
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcC---CccHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHH
Q 002041 693 RTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQ---QPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTT 769 (976)
Q Consensus 693 ~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~---~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~ 769 (976)
-+-+.+...+..+..++++.+..+++.+++++....+... ..+.+.+.+.+....|.+ +...-+.+...+ .
T Consensus 613 ~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~d--f~~y~d~~ms~L----v 686 (858)
T COG5215 613 TAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTD--FNIYADVLMSSL----V 686 (858)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHH----H
Confidence 4556778888888888999898888888888888775422 234566666666666665 333333333333 3
Q ss_pred hhhcCcccCCCCCccHHHHHHHHHHHHh
Q 002041 770 CLLTSIEEFTSRPDVADDCFLLASRCIR 797 (976)
Q Consensus 770 ~~l~~~~~~~~~pD~~~~~f~l~~~~~~ 797 (976)
+.+.+ ...+-|+....+...+.+..
T Consensus 687 Q~lss---~~~~R~lKPaiLSvFgDIAl 711 (858)
T COG5215 687 QCLSS---EATHRDLKPAILSVFGDIAL 711 (858)
T ss_pred HHhcC---hhhccccchHHHHHHHHHHH
Confidence 33432 34556666666665555554
No 11
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=3.3e-19 Score=198.16 Aligned_cols=726 Identities=14% Similarity=0.169 Sum_probs=402.7
Q ss_pred chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCC-------C
Q 002041 2 ELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVE-------E 74 (976)
Q Consensus 2 ~~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~-------~ 74 (976)
+-.+.+-+.+..- -.+||+.|+-|++.|++.+..++.--..+.|+.++..+.++|.-||..++|.|+++|. .
T Consensus 2 ~~le~l~~~l~qT-l~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~ 80 (960)
T KOG1992|consen 2 ANLETLANYLLQT-LSPDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIK 80 (960)
T ss_pred ccHHHHHHHHHhc-CCCCCccCchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccc
Confidence 3345566655553 2578999999999999999887666677888887666889999999999999999995 4
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCC-cHHHHHHHHhhccc
Q 002041 75 LPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPE-FVPGFLELLTVLPE 153 (976)
Q Consensus 75 l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l~~~~~-~~~~~L~~L~~l~E 153 (976)
+.+++++.+|..++.++.+ .|..+..+|..+|..++.+..|+.||+ ++++++..++++.- ....+|..-.++--
T Consensus 81 i~~~~~e~ikslIv~lMl~---s~~~iQ~qlseal~~Ig~~DFP~kWpt--Ll~dL~~~ls~~D~~~~~gVL~tahsiFk 155 (960)
T KOG1992|consen 81 IIEEDREQIKSLIVTLMLS---SPFNIQKQLSEALSLIGKRDFPDKWPT--LLPDLVARLSSGDFNVINGVLVTAHSIFK 155 (960)
T ss_pred cchhHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHhccccchhhHH--HHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence 5667899999999998887 688899999999999999999999999 99999999986542 22334433332211
Q ss_pred ccccccccCChhHHHHHHHHHHHhHH----HHHHHHHHhhhhhHHHHHHHHHHHHhhhccCCCCCcccccchhHHHHHhc
Q 002041 154 EVFNYKIAARPERRRQFEKELTSQME----VALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSS 229 (976)
Q Consensus 154 E~~~~~~~~~~~~r~~l~~~l~~~~~----~vl~~l~~~l~~~~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~~~~~ 229 (976)
+.+. .-|-.++-.+++.... -...++.+..+-......--..++.|.+. .-++..+|..
T Consensus 156 ---r~R~---efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~v-----------lll~~klfys 218 (960)
T KOG1992|consen 156 ---RYRP---EFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGV-----------LLLICKLFYS 218 (960)
T ss_pred ---hcCc---ccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHH-----------HHHHHHHHHh
Confidence 1111 1111223333333222 22222222211100000001133444431 1234445555
Q ss_pred CCC---cchH----HHHHHHHHHHhhhhccCCCCCccCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhH
Q 002041 230 LHS---EILS----EASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDS 302 (976)
Q Consensus 230 L~~---~~~~----~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~v~~l~~~~~~~~~d~e~~~~~~~l~~~~~~~ 302 (976)
|+. |+.+ ..++..+...++.+.+.-. +.+++..++. +.-..+|.++.-+...
T Consensus 219 Ln~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le-~~~ee~~~l~--------------------~lka~ICEi~~LY~~k 277 (960)
T KOG1992|consen 219 LNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLE-SDEEEATVLD--------------------KLKAQICEIFNLYATK 277 (960)
T ss_pred hhcccchHHHHhhHHHHHHHHHHHHhccCcccc-cCcccccHHH--------------------HHHHHHHHHHHHHHHh
Confidence 543 3333 3444445444443221100 0111111111 1223566666666665
Q ss_pred HHHHHhcCCchhHH-HHHHHHhhccCC-CcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHhhHHHH--H
Q 002041 303 YVELIATGSDESML-IVHALLEVASHP-EYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAY--E 378 (976)
Q Consensus 303 ~~~~l~~~~~~~~~-ll~~lL~~~~~~-~~~vs~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 378 (976)
|-.-+..--+++.. ..+++-..+.++ .|-....++.|...+.+. .. |..+| .
T Consensus 278 YeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r----~~--------------------y~~~F~~~ 333 (960)
T KOG1992|consen 278 YEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRR----PH--------------------YAELFEGE 333 (960)
T ss_pred hHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhh----hh--------------------hHhhhcch
Confidence 54433210012222 223333334444 355667788986554432 11 22222 3
Q ss_pred HHHHHHHhhccCCCC-CC----CCChhhhHHhHhhhhcccccCCccchhhhhhhhhhhHHHHHHhhcChhHHHHHHHHHH
Q 002041 379 SLVSLVSFRVQYPQD-YQ----DLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKF 453 (976)
Q Consensus 379 ~Ll~~l~~k~~~p~d-~~----~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l 453 (976)
+++..+++++..|.- .. +.-+|+..+| .|+|+...-.. +.|+++.|+++.++.... .++...+...+
T Consensus 334 ~vl~~i~e~VvlpN~~lR~eDeElFED~pleY--iRRDlEGsDvd-----TRRR~a~dlvrgL~~~fe-~~vt~v~~~~v 405 (960)
T KOG1992|consen 334 NVLAQICEKVVLPNLILREEDEELFEDNPLEY--IRRDLEGSDVD-----TRRRAAIDLVRGLCKNFE-GQVTGVFSSEV 405 (960)
T ss_pred HHHHHHHHhhcccccccchhhHHHhccCHHHH--HHHhcccCCcc-----hhHHHHHHHHHHHHHHhc-chhHHHHHHHH
Confidence 556666778888762 11 1111111221 35553321111 245668999999887775 45666666666
Q ss_pred HHhHhh-cCCCCCCcchhhHHHHHHHHhhcccCccc------ccc--h-----HHHhhhcc--CCCCcHHHHHHHHHHHH
Q 002041 454 VEGVAC-CGNKHNEWRPAEAALFCIRAISTYVSVVE------AEV--M-----PQVMALLP--KLPQQPQLLQTVCLTIG 517 (976)
Q Consensus 454 ~~~~~~-~~~~~~~w~~~Ea~L~~l~~i~e~~~~~~------~~~--l-----~~l~~~l~--~~~~~~~v~~t~~~~ig 517 (976)
+..+.+ +.+++.+|...+.++|.+.+++-...... ++. + .+++..|. +.-+||.++..++..+.
T Consensus 406 ~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~ 485 (960)
T KOG1992|consen 406 QRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIY 485 (960)
T ss_pred HHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceee
Confidence 555543 34568899999999999999986543221 111 1 22222332 22248888888887665
Q ss_pred hcHHHHhhCCCCcchHHHHHHHHHcccCCCh-HHHHHHHHHHHHHHHHhhh---------hhhcCHHHHHHHHHHHhhcc
Q 002041 518 AYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRK---------KLCGYLDGLYNVYRTAVNGE 587 (976)
Q Consensus 518 ~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~---------~L~~~l~~ll~~~~~~~~~~ 587 (976)
-|-..+. +..+-.+++.+.+.+..+. .|-.-||+++.++-.-|.. .+.||+..+++-+...++.+
T Consensus 486 ~FR~ql~-----~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p 560 (960)
T KOG1992|consen 486 TFRNQLG-----KEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLP 560 (960)
T ss_pred eecccCC-----hHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCC
Confidence 4432222 2366677777777776543 4888899999888765443 45678888887777666543
Q ss_pred CCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCC-
Q 002041 588 GSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH- 666 (976)
Q Consensus 588 ~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~- 666 (976)
+ ..+-.+++++|-++++-.+. ...++...++..+.+-+.++..++. +.+..+ -..+.++.+++....
T Consensus 561 ~-----~~EneylmKaImRii~i~~~-~i~p~~~~~l~~Lteiv~~v~KNPs----~P~fnH--YLFEsi~~li~~t~~~ 628 (960)
T KOG1992|consen 561 G-----KAENEYLMKAIMRIISILQS-AIIPHAPELLRQLTEIVEEVSKNPS----NPQFNH--YLFESIGLLIRKTCKA 628 (960)
T ss_pred c-----ccccHHHHHHHHHHHHhCHH-hhhhhhhHHHHHHHHHHHHHhcCCC----CchhHH--HHHHHHHHHHHHHhcc
Confidence 1 25678999999999998753 3335555555555444444444332 222333 367888888887653
Q ss_pred -cccHHHHHHHHhHHHHHHHHhhcCCHHHHHH---HHHHHHHHHHHhhh----hhhhhHHHHHHHHHHHHhh-cCCccHH
Q 002041 667 -PEAVADAIQRLWPIFKAIFDIRAWDMRTMES---LCRACKYAVRTSKR----FMGITIGAILEEIQGLYQQ-HQQPCFL 737 (976)
Q Consensus 667 -~~~~~~~~~~~~~~l~~ll~~~~~~~~v~e~---~~~~~~~~~~~~~~----~~~~~l~~l~~~l~~~~~~-~~~~~~L 737 (976)
|..+..+...++|++..+++. +|.|- +..++...+...+. .+.|++|.++.- ....+ ...++.+
T Consensus 629 ~~~~vs~~e~aL~p~fq~Il~e-----DI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp--~lW~r~gNipalv 701 (960)
T KOG1992|consen 629 NPSAVSSLEEALFPVFQTILSE-----DIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSP--NLWKRSGNIPALV 701 (960)
T ss_pred CchHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCH--HHHhhcCCcHHHH
Confidence 566777889999999999874 44443 44444444433322 344445544431 11222 3346666
Q ss_pred HHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhhhcCcccCCCCCccHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHH
Q 002041 738 YLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSM 817 (976)
Q Consensus 738 ~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~~~~l~~~~~~~~ 817 (976)
.++..++..-...-...+.+. .+++.++. ....+-.-+.-|.++.+++.+.|...+. +.+..++....
T Consensus 702 rLl~aflk~g~~~~~~~~~l~--------~iLGifqk---LiaSka~Dh~GF~LLn~i~~~~~~~~~~-py~k~i~~llf 769 (960)
T KOG1992|consen 702 RLLQAFLKTGSQIVEAADKLS--------GILGIFQK---LIASKANDHHGFYLLNTIIESIPPNELA-PYMKQIFGLLF 769 (960)
T ss_pred HHHHHHHhcCchhhcccccch--------hHHHHHHH---HhcCcccchhHHHHHHHHHhcCCHhhhh-HHHHHHHHHHH
Confidence 777766654221100001121 12222221 1111112234577888888876654332 34555555544
Q ss_pred HhcccCCchh-HHHHHHHHHHhh
Q 002041 818 IGITVQHREA-SNSILTFLSDIF 839 (976)
Q Consensus 818 ~~l~~~~~~~-~~~~~~fl~~l~ 839 (976)
.=++....+- .+...-|+.-+.
T Consensus 770 ~RlqnskT~kf~k~~~vF~~~~~ 792 (960)
T KOG1992|consen 770 QRLQNSKTEKFVKSFIVFFSLFT 792 (960)
T ss_pred HHHhccCcHHHHHHHHHHHHHHH
Confidence 4444332222 445555555443
No 12
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=5.3e-17 Score=178.47 Aligned_cols=628 Identities=12% Similarity=0.101 Sum_probs=369.8
Q ss_pred CCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCC-----CChhhHHHHHHHHHHHH
Q 002041 17 HPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEE-----LPSEAVRGLQDSLNTLL 91 (976)
Q Consensus 17 ~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~-----l~~~~~~~lr~~Ll~~l 91 (976)
.+|+..|+.|++.|.+++|.|+....|++++.+..-+..||.-||..++|||.+.|+. .+++++...|+.+++.+
T Consensus 14 dada~~rt~AE~~Lk~leKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~Dek~e~K~~lieni 93 (970)
T COG5656 14 DADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKADEKSEAKKYLIENI 93 (970)
T ss_pred ccCcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCCcccHHHHHHHHHHH
Confidence 5688899999999999999999999999999875578889999999999999999986 34467788888888777
Q ss_pred HH-hcCCChHHHHHHHHHHHHHHhhccc-cccCCccchHHHHHhcCCCCC-cHHHHHHHHhhcccccccccccCChhHHH
Q 002041 92 KK-FHKGPPKVRTQISIAVAALAVHISA-EDWGGGGIVNWLRDEMNSHPE-FVPGFLELLTVLPEEVFNYKIAARPERRR 168 (976)
Q Consensus 92 ~~-~~~~~~~v~~kL~~~La~l~~~~~~-~~W~~~~~~~~l~~~l~~~~~-~~~~~L~~L~~l~EE~~~~~~~~~~~~r~ 168 (976)
.. +-.+|...|..+...+..++-..++ +.|+ +.+...+.+.++.. ++..+|..+..+.. ..|+.. ..+|.
T Consensus 94 l~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg---l~p~~~nll~s~ea~~vy~gLlcl~elfk---ayRwk~-ndeq~ 166 (970)
T COG5656 94 LDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG---LFPKAANLLRSSEANHVYTGLLCLEELFK---AYRWKY-NDEQV 166 (970)
T ss_pred HHHHhcCCchHHHHHHHHHHHhccccCchhhcc---cchHHHHhhcccchhHHHHHHHHHHHHHH---HHhhhc-cchHh
Confidence 66 3457888888888888777766554 5665 66777777766542 33344544433322 234443 23444
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhh-----hHHHHHHHHHHHHhhhccCCCCCcccccchhHHHHHhcCCCcchHHHHHHHH
Q 002041 169 QFEKELTSQMEVALSTLTACLHI-----NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVI 243 (976)
Q Consensus 169 ~l~~~l~~~~~~vl~~l~~~l~~-----~~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~~~~~L~~~~~~~~a~~~l 243 (976)
.+..-+....|.+.++-..+.+. .++...+++.+++.+.+ ++|.. |+.++.+-.|....
T Consensus 167 di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~--~LP~~--------------lsa~e~f~sw~ql~ 230 (970)
T COG5656 167 DILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYY--SLPDF--------------LSAIETFSSWFQLS 230 (970)
T ss_pred hHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHh--hCCHH--------------HccchhhHHHHHHH
Confidence 44444566677777665555542 36788899999998887 46653 45566777888888
Q ss_pred HHHhhhhccCCCCCccCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHHH--HhcC--C-chhHHHH
Q 002041 244 SELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVEL--IATG--S-DESMLIV 318 (976)
Q Consensus 244 ~~ii~~~~~~~~~~~~~~~~~i~~l~~~v~~l~~~~~~~~~d~e~~~~~~~l~~~~~~~~~~~--l~~~--~-~~~~~ll 318 (976)
..|++++-+.. .... -+-+...-+|+-. ..+..-++.|+|..++...... .... . ..+..++
T Consensus 231 l~i~qkplp~e--vlsl-dpevRs~~~wvKc----------kKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il 297 (970)
T COG5656 231 LRILQKPLPNE--VLSL-DPEVRSLSKWVKC----------KKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMIL 297 (970)
T ss_pred HHHHcCCCCHH--Hhcc-Chhhccccchhhh----------hHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 88887764210 0000 0111122222210 0133445666666666542211 0000 0 0122222
Q ss_pred HHHHhhcc-CC--CcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCC--C
Q 002041 319 HALLEVAS-HP--EYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQ--D 393 (976)
Q Consensus 319 ~~lL~~~~-~~--~~~vs~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~--d 393 (976)
+..++-+. +. ..=.+...+.|...+.+..... .+.|...+|+++-++...+--+-.+. +
T Consensus 298 ~tffkqie~wgqgqLWlsd~~LYfi~~Fve~cv~~----------------d~tw~l~ePhlq~ii~~vIfPllc~see~ 361 (970)
T COG5656 298 ATFFKQIEEWGQGQLWLSDIELYFIDFFVELCVDA----------------DQTWRLMEPHLQYIISGVIFPLLCLSEEE 361 (970)
T ss_pred HHHHHHHHHhhcCCeecchHHHHHHHHHHHHHhhh----------------HhhHhhhccHHHHHHHhhhhhhcCCChhh
Confidence 22222221 22 2235566666665566544320 25688889997666643332222222 2
Q ss_pred CCCCChhhhHHhHh-----hhhcccccCCccchhhhhhhhhhhHHHHHHhhcChhH----HHHHHHHHHHHhHhhcCCCC
Q 002041 394 YQDLSLEDLKEFKH-----TRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDA----TLKILYIKFVEGVACCGNKH 464 (976)
Q Consensus 394 ~~~~~~d~~~~f~~-----~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~----~l~~l~~~l~~~~~~~~~~~ 464 (976)
.+.|+.| .++|.+ ||...++|.+ ..+++.-+....+ +. ++.++...+.+...+..+ -
T Consensus 362 eElfEnD-p~eyirry~df~d~g~spdla-----------al~fl~~~~sKrk-e~TfqgiLsf~~sil~qsaa~psn-~ 427 (970)
T COG5656 362 EELFEND-PDEYIRRYYDFFDNGLSPDLA-----------ALFFLIISKSKRK-EETFQGILSFLLSILGQSAATPSN-I 427 (970)
T ss_pred HHHHhcC-HHHHHHHhcchhcCCCChhHH-----------HHHHHHHHhcccc-hhhhhhHHHHHHHHHhcccCCCCc-c
Confidence 3344433 333322 2222222222 2344444444444 44 344444444433222111 3
Q ss_pred CCcchhhHHHHHHHHhhcccCcccccchHHHhhh------ccCCC-CcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHH
Q 002041 465 NEWRPAEAALFCIRAISTYVSVVEAEVMPQVMAL------LPKLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVL 537 (976)
Q Consensus 465 ~~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~------l~~~~-~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l 537 (976)
.+-++.|+|++.++++..-++. . .....+++. +|.+. ....++..+|+++++|+.-+... . .+..++
T Consensus 428 dnarq~egalr~lasi~s~itk-~-sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~-~---ill~ay 501 (970)
T COG5656 428 DNARQAEGALRLLASIKSFITK-M-SPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDN-G---ILLEAY 501 (970)
T ss_pred ccHHHHhhHHHHHHHHHHHhcc-C-chHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccc-h---HHHHHH
Confidence 5688999999999999884433 2 233444443 23443 25689999999999997655543 3 667777
Q ss_pred HHHHcccCCCh-HHHHHHHHHHHHHHHHhhh--hhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChH
Q 002041 538 SILTSGMSTSE-DTAAAAALAFRHICDDCRK--KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQV 614 (976)
Q Consensus 538 ~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~--~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~ 614 (976)
.....++.++. .|+..|+.|++-|..+-.. .+..|++..|+.+..+-+ ....+....++|++ ++..+ +
T Consensus 502 e~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn-----~feiD~LS~vMe~f---Ve~fs-e 572 (970)
T COG5656 502 ENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSN-----TFEIDPLSMVMESF---VEYFS-E 572 (970)
T ss_pred HHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcc-----cccchHHHHHHHHH---HHHhH-H
Confidence 77777776643 5999999999999976543 466899999988888764 35666677777776 55554 4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhc----CCCcccccCcc--hhhhHHHHHHHHhhhcCC-cccHHHHHHHHhHHHHHHHHh
Q 002041 615 DAKKALEMLCLPVVTPLQEIINQ----GPEILQKKHPR--DLTVHIDRFAYIFRYVNH-PEAVADAIQRLWPIFKAIFDI 687 (976)
Q Consensus 615 ~~~~~l~~ll~p~~~~l~~~~~~----~~~~~~~~~~~--~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~ll~~ 687 (976)
+..++...++..+.+.+-++... .....+...-+ +....|+.+.+++-+++. |.......+.+.|++.-++..
T Consensus 573 ELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn 652 (970)
T COG5656 573 ELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKN 652 (970)
T ss_pred hhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence 55566666666666654444332 21111100111 122345666666555543 444445556677888777654
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 002041 688 RAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLY 728 (976)
Q Consensus 688 ~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~ 728 (976)
.-.++...+|+++... +-....+.|..+.+.+.+....
T Consensus 653 --~i~dfy~Ea~dildg~-tf~skeI~pimwgi~Ell~~~l 690 (970)
T COG5656 653 --EISDFYQEALDILDGY-TFMSKEIEPIMWGIFELLLNLL 690 (970)
T ss_pred --hHHHHHHHHHHHHhhh-hHHHHHhhhhhhHHHHHHHhcc
Confidence 2235666666666522 1122344577777777665543
No 13
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.3e-14 Score=155.84 Aligned_cols=784 Identities=14% Similarity=0.151 Sum_probs=415.3
Q ss_pred CchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCCCChhhH
Q 002041 1 MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAV 80 (976)
Q Consensus 1 ~~~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~ 80 (976)
|++.++++.....+|.+.|+..|.+|+.-|.+|..+|++.+-|.-|+.. +..+..+..|+..|...+.+. ..+|.+++
T Consensus 1 m~sLaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~-gs~pYs~mlAst~L~Klvs~~-t~lpl~qr 78 (1082)
T KOG1410|consen 1 MQSLAQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLER-GSYPYSQMLASTCLMKLVSRK-TPLPLEQR 78 (1082)
T ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHcCC-CCCcHHHH
Confidence 8899999999999999999999999999999999999999999999987 456688999999998777654 37999999
Q ss_pred HHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhccccccCCc--------cchHHHHHhcCCC-CCcHHHHHHHHhh
Q 002041 81 RGLQDSLNTLLKKFH-KGPPKVRTQISIAVAALAVHISAEDWGGG--------GIVNWLRDEMNSH-PEFVPGFLELLTV 150 (976)
Q Consensus 81 ~~lr~~Ll~~l~~~~-~~~~~v~~kL~~~La~l~~~~~~~~W~~~--------~~~~~l~~~l~~~-~~~~~~~L~~L~~ 150 (976)
..||+++++++...+ +-+++|..-||+.+|.+-+.. |-+. +++.++...++.+ .+++.+.+.+|..
T Consensus 79 ldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~g----W~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsq 154 (1082)
T KOG1410|consen 79 LDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLG----WFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQ 154 (1082)
T ss_pred HHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhcc----ccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHH
Confidence 999999999998832 336789999999999988764 4332 4667777777654 4678889999999
Q ss_pred ccccccccccc--CChhHHHH--HHHH-HHHhHHHHHHHHHHhh----hhh-------HHHHHHHHHHHH-hhhccCC--
Q 002041 151 LPEEVFNYKIA--ARPERRRQ--FEKE-LTSQMEVALSTLTACL----HIN-------ELKEQVLEAFAS-WLRLKHR-- 211 (976)
Q Consensus 151 l~EE~~~~~~~--~~~~~r~~--l~~~-l~~~~~~vl~~l~~~l----~~~-------~~~~~~l~~~~s-Wi~~~~~-- 211 (976)
|..|+...+.. .+++||.. +++. +.+-+.-.+..+.... ++. .+.+.+++|+.- +|.-...
T Consensus 155 LvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEs 234 (1082)
T KOG1410|consen 155 LVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDES 234 (1082)
T ss_pred HHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhccccccccccccc
Confidence 99999865433 33333321 3322 2222222233333322 111 356777888763 3432211
Q ss_pred --------CCCc---ccccchhHHHHHhcCCC--cchHHHHHHHHHHHhhhhccCCCCCccCchhHHHHHHHHHHhhHHH
Q 002041 212 --------IPGS---VLASHPLVLTALSSLHS--EILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAH 278 (976)
Q Consensus 212 --------i~~~---~l~~~~l~~~~~~~L~~--~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~v~~l~~~ 278 (976)
||.+ .+..+..+++.|...++ |++.+.|++|++.+.+..++... ..+..++++.++.++....+.
T Consensus 235 sed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN--~aeRa~yl~~Lv~Gvk~il~n 312 (1082)
T KOG1410|consen 235 SEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFN--GAERAKYLQHLVEGVKRILEN 312 (1082)
T ss_pred cccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHhC
Confidence 2221 12356678888887764 68899999999999987765431 135567888888776443221
Q ss_pred hhhccCCHHHHHHHHHHHHHHhhHHH-HHHh--cCCchhHHH-HHHHHhhccCCC--cchhhhhHHHHHHHHHHhccccc
Q 002041 279 LTDSSKDEEDVKAIARLFADMGDSYV-ELIA--TGSDESMLI-VHALLEVASHPE--YDIASMTFNFWHSLQVILTKRDS 352 (976)
Q Consensus 279 ~~~~~~d~e~~~~~~~l~~~~~~~~~-~~l~--~~~~~~~~l-l~~lL~~~~~~~--~~vs~~~l~fW~~l~~~l~~~~~ 352 (976)
..+-.|.+.++.+||++..+-.+|- .-++ ++.++...+ -++.+..+.|=+ ..-....+.+|..+...+.
T Consensus 313 -p~~LsD~~nyHeFCRllaRlktNYQL~ELv~v~~Y~e~irLiAeFTv~SLq~wefa~nSvyyLlt~WqRmvaSVP---- 387 (1082)
T KOG1410|consen 313 -PQGLSDPANYHEFCRLLARLKTNYQLGELVKVECYPEVIRLIAEFTVTSLQHWEFAPNSVYYLLTLWQRMVASVP---- 387 (1082)
T ss_pred -CcCCCCcchHHHHHHHHHHHHhhhhhHhhhccCCcHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhcCC----
Confidence 1334577788999999998876652 1222 233333222 233333333322 2233567899999887543
Q ss_pred ccccCcccchHHHHHHHHHhhHHHH-HHHHHHHHhhc--cCCCCCCCCChhhhHHhHhhhhcccccCCccchhhhhhhhh
Q 002041 353 YISFGNEASAEAERSRRLQVFRSAY-ESLVSLVSFRV--QYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAV 429 (976)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~Ll~~l~~k~--~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~ 429 (976)
|.. +++| .....|.|-. ...+..=++.+ ..|++.++- -||...- .+ .
T Consensus 388 yvk-~~~p-------hlLd~y~PeIt~afi~SRl~sV~~ivrd~~d~P-Ldd~~~~----~q-----------------~ 437 (1082)
T KOG1410|consen 388 YVK-NTEP-------HLLDTYCPEITKAFITSRLQSVEIIVRDGLDDP-LDDTGAV----QQ-----------------Q 437 (1082)
T ss_pred ccc-CCCh-------HHHhhhcHHHHHHHHHHHhhhhheecccCCCCc-chhhHHH----HH-----------------H
Confidence 211 1222 2223333311 11111111111 123332211 1111100 00 1
Q ss_pred hhHHHHHHhhcCh------hHHHHHHHHHHHHhHhhcCCCCCCcchhhHHH----HHHHHhhc-ccCc---cc-----cc
Q 002041 430 ADVLIDAASVLGG------DATLKILYIKFVEGVACCGNKHNEWRPAEAAL----FCIRAIST-YVSV---VE-----AE 490 (976)
Q Consensus 430 ~d~l~~~~~~l~~------~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~L----~~l~~i~e-~~~~---~~-----~~ 490 (976)
.|.+..+|+.==. -..+++..+..++........+.+-.-.|+-| |.++++-. .++. ++ .+
T Consensus 438 le~l~~icRceYEkTc~llvq~fdq~aqsyqe~~~~~s~~~~d~ai~EgrL~Wlv~lvgtvV~gk~t~~Std~~d~mDgE 517 (1082)
T KOG1410|consen 438 LEQLATICRCEYEKTCALLVQLFDQNAQSYQELLQNGSANDADIAIQEGRLVWLVYLVGTVVGGKTTATSTDEHDAMDGE 517 (1082)
T ss_pred HHHhhhhhhhhHhhHHHHHHHHHhhhHHHHHHHhcccCCCchhHHHHhhhhhhhHHHhHHHhcceecccccchhhhhhhH
Confidence 1111111110000 01222233333333321111123333344433 44444322 1111 11 13
Q ss_pred chHHHhhhc----cCCCC--cHHHHHHHHHHHHhcHH-HHhh------------------CCCCcchHHHHHHHHHccc-
Q 002041 491 VMPQVMALL----PKLPQ--QPQLLQTVCLTIGAYSK-WFDA------------------ASSDPSILASVLSILTSGM- 544 (976)
Q Consensus 491 ~l~~l~~~l----~~~~~--~~~v~~t~~~~ig~y~~-~~~~------------------~p~~~~~l~~~l~~l~~~l- 544 (976)
....+++.+ +++|. +.++-.+.++.+.+|-+ |+.. +.+ ...+..++..+...+
T Consensus 518 L~arvlql~nlmdsr~~~~~n~rle~ail~f~eqFRk~YvgDQ~~rsSkvY~rl~e~Lgi~de-~~~L~viv~KI~TNLK 596 (1082)
T KOG1410|consen 518 LSARVLQLVNLMDSRLPLKGNERLELAILHFLEQFRKAYVGDQIQRSSKVYARLSEVLGITDE-SDVLGVIVGKILTNLK 596 (1082)
T ss_pred HHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHHhhcc
Confidence 445555543 24552 56666677766666644 2221 111 123444445444333
Q ss_pred --CCChHHHHHHHHHHHHHHHHhh--hhhh--cCHHHHHH-HHHHHhhc-cCCCCC-CHHhHHHHHHHHHHHHhc-CChH
Q 002041 545 --STSEDTAAAAALAFRHICDDCR--KKLC--GYLDGLYN-VYRTAVNG-EGSLKV-SAEDSLHLVEALSMVITE-LPQV 614 (976)
Q Consensus 545 --~~~~~v~~~A~~al~~l~~~~~--~~L~--~~l~~ll~-~~~~~~~~-~~~~~l-~~~~~~~l~eai~~vi~~-~p~~ 614 (976)
...+++-...-..|..+.-.-. +.|. +-+.-+++ .-..-+.- +....+ +...|...|+++|.++-. .+++
T Consensus 597 ~w~~~e~vi~~tLslf~dLs~GY~~~kkL~kl~~VqfmlnNHT~ehF~FLg~~~~~~~~r~RTTFY~al~rLl~~d~sed 676 (1082)
T KOG1410|consen 597 YWGRNEPVISLTLSLFNDLSLGYSAVKKLVKLDAVQFMLNNHTSEHFPFLGINIDLQDMRCRTTFYTALTRLLMVDLSED 676 (1082)
T ss_pred cccCCchHHHHHHHHHHHHhhhHHHHHHHhcchhhhhHhcccchhhCcccccCccchhhhhHhHHHHHHHHHHhhccccc
Confidence 2233355555555555543211 1111 11111110 00000000 001111 245678899999999865 3333
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCC------cccH----HH-HHHHHhHHHHH
Q 002041 615 DAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH------PEAV----AD-AIQRLWPIFKA 683 (976)
Q Consensus 615 ~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~------~~~~----~~-~~~~~~~~l~~ 683 (976)
+ .-+++++.|+.+.++.+++.-+.+.- ...++.. .+..++|.+.+ .... .+ .....+|++..
T Consensus 677 e--~~fe~fm~PLt~~fe~v~~~~~nn~f--~ee~vK~---~liGL~RDLRGiA~A~~tktsy~~LFdWmYP~~mpllq~ 749 (1082)
T KOG1410|consen 677 E--DMFERFMLPLTDAFEGVLQVFQNNCF--EEEQVKR---ILIGLCRDLRGIAFASNTKTSYQMLFDWMYPEYMPLLQR 749 (1082)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHhccccc--cHHHHHH---HHHHHHHHhhhhhhhhccchHHHHHHHHhhhhHHHHHHH
Confidence 3 45677888888888877665433211 1111111 12222333322 1111 11 12477888888
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHH---------------------------HHhhhhhhhhHHHHHHHHHHHHhhcCC-cc
Q 002041 684 IFDIRAWDMRTMESLCRACKYAV---------------------------RTSKRFMGITIGAILEEIQGLYQQHQQ-PC 735 (976)
Q Consensus 684 ll~~~~~~~~v~e~~~~~~~~~~---------------------------~~~~~~~~~~l~~l~~~l~~~~~~~~~-~~ 735 (976)
-.++|.+++++.--+.+++...+ ..+|.-+.. +|.+-.-=+-.++-... .|
T Consensus 750 ~Ve~W~~~p~vtTPiLklmaE~v~NrsQRL~Fd~SSpngiLLFrEtSKmv~~YG~riL~-Lp~vskdqiY~~kyKgI~v~ 828 (1082)
T KOG1410|consen 750 AVEKWYGCPDVTTPILKLMAELVQNRSQRLKFDVSSPNGILLFRETSKMVSIYGNRILQ-LPEVSKDQIYAEKYKGISVC 828 (1082)
T ss_pred HHHhcCCCCccccHHHHHHHHHHhhhHhheecccCCCceeEEehhhhHHHHHHhhHhhc-ccCcchhhhHHHHhcCceeh
Confidence 88998888776655555544333 222222211 11111100011111222 23
Q ss_pred HHHHHHHHHHHhCCC---Ccch-HHHHHHHHHHHHHHHhhhcC--cccCCCCCccHHHHHHHHHHHHhhCCCcccC--cC
Q 002041 736 FLYLSSEVIKIFGSD---PSCA-SYLHNLIEALFKRTTCLLTS--IEEFTSRPDVADDCFLLASRCIRYCPQLFIP--SS 807 (976)
Q Consensus 736 ~L~l~~~li~~~~~~---~~~~-~~l~~~~~~l~~~~~~~l~~--~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~--~~ 807 (976)
|.-+-..++..|-.= .-|+ ..+++.+..++ +++-+ ..++-+++.+.++||+|+..+...+...+.. .+
T Consensus 829 ~siLk~AL~GnYv~FGVFrLYGD~~l~daL~~fv----Km~lsIp~sD~l~Y~Klsqsyy~llE~l~qdhm~Fi~nL~~~ 904 (1082)
T KOG1410|consen 829 FSILKNALSGNYVNFGVFRLYGDSALDDALQTFV----KMLLSIPHSDLLSYRKLSQSYYNLLEVLTQDHMPFITNLEPD 904 (1082)
T ss_pred HHHHHHHhhcCccccceeeeeCchHHHHHHHHHH----HHHhcCCHHHHHhHHHHHHHHhhHHHHHHhccchhhhcCcHH
Confidence 333333333322110 0011 24445444433 33332 2455677889999999999999866555543 34
Q ss_pred ChHHHHHHHHHhcccCCchhHHHHHHHHHHhhc
Q 002041 808 VFPSLVDCSMIGITVQHREASNSILTFLSDIFD 840 (976)
Q Consensus 808 ~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~l~~ 840 (976)
.+-.++...-.+++.-+.....+||.-+..+++
T Consensus 905 vfm~ll~Si~sGLt~lDt~v~ssccsslD~i~t 937 (1082)
T KOG1410|consen 905 VFMYLLRSISSGLTSLDTIVSSSCCSSLDTIVT 937 (1082)
T ss_pred HHHHHHHHHHhccchhhHHHHhHHHHHHHHHHH
Confidence 555555555567777777777888877777765
No 14
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.74 E-value=3.6e-13 Score=152.35 Aligned_cols=146 Identities=18% Similarity=0.274 Sum_probs=116.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCC----------
Q 002041 5 NTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEE---------- 74 (976)
Q Consensus 5 ~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~---------- 74 (976)
+.+.+.+... -++|+..|.+|+..|.++..+++.-....+++.+...+.+.|++|+..|++-|.++|..
T Consensus 4 ~~ii~~L~~~-ls~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~ 82 (1005)
T KOG2274|consen 4 QAIIELLSGS-LSADQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLI 82 (1005)
T ss_pred HHHHHHHHhh-cCCChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCc
Confidence 3444444444 36799999999999999999988555555666555578889999999999999999963
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC-CCcHHHHHHHHhhccc
Q 002041 75 LPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH-PEFVPGFLELLTVLPE 153 (976)
Q Consensus 75 l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l~~~-~~~~~~~L~~L~~l~E 153 (976)
.+++.+..+|+.|++.+.. .++.+++-.+.+++.++...+|+.||+ .++.+...++++ .++....+++|..+..
T Consensus 83 ~~e~~K~~IRe~Ll~~l~~---sn~ki~~~vay~is~Ia~~D~Pd~WpE--lv~~i~~~l~~~n~n~i~~am~vL~el~~ 157 (1005)
T KOG2274|consen 83 VSEEVKALIREQLLNLLDD---SNSKIRSAVAYAISSIAAVDYPDEWPE--LVPFILKLLSSGNENSIHGAMRVLAELSD 157 (1005)
T ss_pred ccHHHHHHHHHHHHhhhhc---cccccchHHHHHHHHHHhccCchhhHH--HHHHHHHHHhccchhhhhhHHHHHHHHHH
Confidence 3456788999999998874 677889999999999999999999999 999999988753 3456677888877766
Q ss_pred ccc
Q 002041 154 EVF 156 (976)
Q Consensus 154 E~~ 156 (976)
|+.
T Consensus 158 ev~ 160 (1005)
T KOG2274|consen 158 EVD 160 (1005)
T ss_pred HHH
Confidence 654
No 15
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=99.69 E-value=1e-16 Score=155.45 Aligned_cols=141 Identities=26% Similarity=0.434 Sum_probs=126.8
Q ss_pred ChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCcHHHHHHHHhhccccccc-ccccCChhHHHHHHHHHHH
Q 002041 98 PPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFN-YKIAARPERRRQFEKELTS 176 (976)
Q Consensus 98 ~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l~~~~~~~~~~L~~L~~l~EE~~~-~~~~~~~~~r~~l~~~l~~ 176 (976)
|++|++|+|.+++.++++.+|+.||+ +++++++.+++++.+..+++.+|+.++||+.+ .+..++.+||.++++.+.+
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp~--~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~ 78 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWPD--FLEDLLQLLQSSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRS 78 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTSTT--HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCch--HHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHH
Confidence 68999999999999999999999999 99999999988777888999999999999986 3455667899999999999
Q ss_pred hHHHHHHHHHHhhhh------hHHHHHHHHHHHHhhhccCCCCCcccccchhHHHHHhcCCCcchHHHHHHHH
Q 002041 177 QMEVALSTLTACLHI------NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVI 243 (976)
Q Consensus 177 ~~~~vl~~l~~~l~~------~~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~~~~~L~~~~~~~~a~~~l 243 (976)
+.+.|++++.++++. +++...+++|+.+|+.| ++.+.+.++++++.+++.|++++++++|++||
T Consensus 79 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~---~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 79 NSPDILEILSQILSQSSSEANEELVKAALKCLKSWISW---IPIELIINSNLLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTT---S-HHHHHSSSHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHh---CCHHHhccHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 999999999998876 46788999999999997 67777778889999999999999999999996
No 16
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=3.4e-12 Score=142.30 Aligned_cols=169 Identities=13% Similarity=0.134 Sum_probs=127.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCC-----CCChhhHH
Q 002041 7 VKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVE-----ELPSEAVR 81 (976)
Q Consensus 7 v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~-----~l~~~~~~ 81 (976)
|.+.++.. .++|+..++-|++.|++.++.|+.......+..+.+.+..||..|+..+||-|.+.|. .+|+|+|.
T Consensus 2 vvq~Lq~A-ts~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK~ 80 (978)
T KOG1993|consen 2 VVQVLQQA-TSQDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEKD 80 (978)
T ss_pred HHHHHHHh-cCCCcccchhHHHHHHhhccCCcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcCCcccCCHHHHH
Confidence 44555555 5778889999999999999999999999888877667788999999999999999995 79999999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC---CC--cHHHHHHHHhhcccccc
Q 002041 82 GLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH---PE--FVPGFLELLTVLPEEVF 156 (976)
Q Consensus 82 ~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l~~~---~~--~~~~~L~~L~~l~EE~~ 156 (976)
.||..++.++.. ..+.+--|.+..+|.++.-.+|.+||+ +++++.+.+++. .+ ...-.|..|..+--+.+
T Consensus 81 ~iR~~Ll~~~~E---~~nQlaiQ~AvlisrIARlDyPreWP~--Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~La 155 (978)
T KOG1993|consen 81 FIRCNLLLHSDE---ENNQLAIQNAVLISRIARLDYPREWPD--LFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALA 155 (978)
T ss_pred HHHHHHHHhccc---chhHHHHHHHHHHHHHHhcCCCccchh--HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 999999887654 677788899999999999999999999 999998888653 12 11223334443333444
Q ss_pred cccccCChhHHHHHHHHHHHhHHHHHHHHHHh
Q 002041 157 NYKIAARPERRRQFEKELTSQMEVALSTLTAC 188 (976)
Q Consensus 157 ~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~ 188 (976)
+.++ .+-++.+.+-.|.|+.++.-.
T Consensus 156 t~RL-------~a~rk~F~el~~~I~~~l~~~ 180 (978)
T KOG1993|consen 156 TKRL-------LADRKAFYELAPEILTILAPI 180 (978)
T ss_pred HhHH-------hhhhHHHHHHhHHHHHHHHHH
Confidence 3332 233345555667676655433
No 17
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=99.52 E-value=8.8e-13 Score=142.50 Aligned_cols=229 Identities=19% Similarity=0.251 Sum_probs=190.7
Q ss_pred hhhhHHHHHHHHHHHHhhc----CCccHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhhhcCcccCCCCCccHHHH
Q 002041 713 MGITIGAILEEIQGLYQQH----QQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDC 788 (976)
Q Consensus 713 ~~~~l~~l~~~l~~~~~~~----~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pD~~~~~ 788 (976)
...++|++++.+...|+++ +.+..|.+.+.+|.+.|+. +.+.+..+++.++.++..++. ++..+.||.+..|
T Consensus 65 ~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~--~~~~v~~I~~~vf~~Tl~MI~--~d~~~yPe~r~~f 140 (319)
T PF08767_consen 65 ANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGEL--IQPQVPQILEAVFECTLPMIN--KDFEEYPEHRVNF 140 (319)
T ss_dssp HHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGG--CCCCHHHHHHHHHHHHHHHHS--STSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHH--hhhhhChHHHHHH
Confidence 3467889999899999864 5678999999999999985 567788889999999999997 5688999999999
Q ss_pred HHHHHHHHhhCCCccc--CcCChHHHHHHHHHhcccCCchhHHHHHHHHHHhhcccCCCCchhhHHHHHHHHhhchHHHH
Q 002041 789 FLLASRCIRYCPQLFI--PSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASIT 866 (976)
Q Consensus 789 f~l~~~~~~~~p~~~~--~~~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~l~~~~~~~~~~~~~~~~~~~~~~~g~~lv 866 (976)
|.|+..+.++|+..++ +++.+..++++.++|++..+++....+++.+..+++.... ..+ +..+++++.+...++
T Consensus 141 f~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~-~~~---~~~~~F~~~y~~~il 216 (319)
T PF08767_consen 141 FKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK-TNP---EFANQFYQQYYLDIL 216 (319)
T ss_dssp HHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH--SH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh-cCH---HHHHHHHHHHHHHHH
Confidence 9999999999998875 5678999999999999999999999999999999986532 122 346788889999999
Q ss_pred HHHHHHcccCCCCCCcccHHHHHHHHHHHh----------------hHHHHHHHHHHH-hhCCCCCCCHHHHHHHHHHHH
Q 002041 867 RILIASLTGALPSSRLETVTYALLALTRAY----------------GVRSLEWAKESV-SLIPLTALAEVERSRFLQALS 929 (976)
Q Consensus 867 ~~ll~~l~~~~~~~~~~~~~~~L~~l~~~~----------------~~~~~~wl~~~l-~~~p~~~~~~~~k~~f~~~l~ 929 (976)
..++..++...+.+.++..+.+|..|.+.. .....+|+.+.+ +.|| ++++++.+.|++.++
T Consensus 217 ~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve~~~i~~~l~~~~~~n~~~v~~~i~~~L~~~Fp--~l~~~qi~~fv~~Lf 294 (319)
T PF08767_consen 217 QDIFSVLTDSDHKSGFKLQSQILSNLFRLVESGSIQVPLFDPGMSNQEFVSEYIANLLSEAFP--NLSPKQIENFVQGLF 294 (319)
T ss_dssp HHHHHHHHSTT-GGGHHHHHHHHHHHHHHHHTT-SSSSSSSTTT-HHHHHHHHHHHHHHHH-T--TS-HHHHHHHHHHHH
T ss_pred HHHHHHHHCcccHHHHHHHHHHHHHHHHHHHcccccccccCCCCccHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHH
Confidence 999999999999999999999999998531 134677888777 4789 789999999999999
Q ss_pred HHhcCCCchhhhHHHHHHHHHHHh
Q 002041 930 EAASGVDVNAAMAPVEELSDVCRR 953 (976)
Q Consensus 930 ~~~~~~~~~~~~~~l~~F~~~cr~ 953 (976)
... ++..+||..+|||....|.
T Consensus 295 ~~~--~d~~~Fk~~lrDFlI~~ke 316 (319)
T PF08767_consen 295 ELN--NDPEKFKTHLRDFLIQLKE 316 (319)
T ss_dssp HTT--T-HHHHHHHHHHHHHHHTS
T ss_pred Hhc--CCHHHHHHHHHHHhhhhhh
Confidence 864 6789999999999987764
No 18
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.40 E-value=7.7e-09 Score=118.42 Aligned_cols=144 Identities=16% Similarity=0.135 Sum_probs=112.1
Q ss_pred CchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCC-----C
Q 002041 1 MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEE-----L 75 (976)
Q Consensus 1 ~~~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~-----l 75 (976)
|+....|+++-.+ .++||..++.|++.|++..+.++.-.....+..+...+...|.-|+..++|-|.++|.+ +
T Consensus 1 M~~~~vv~~~~~a--qs~~p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i 78 (947)
T COG5657 1 MEDLPVVKQLDLA--QSPDPPSVKCAEERLRQWEKQHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSI 78 (947)
T ss_pred CCchHHHHHHHhh--cCCCCchHhhHHHHHHhhhccccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCC
Confidence 6666656555443 46788889999999999999999777777777665578889999999999999999964 5
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CcHHHHHHHHhhc
Q 002041 76 PSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVL 151 (976)
Q Consensus 76 ~~~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l~~~~-~~~~~~L~~L~~l 151 (976)
.+++...+|+.++.++.+ .+....-|.+.+++.++.-.+|++||+ +++++...+++.. ......+..+..+
T Consensus 79 ~p~e~v~IR~~l~~lii~---s~n~l~iq~a~avs~IA~~DfPdeWpT--L~~DL~~~Ls~~D~~tn~~~L~~~h~I 150 (947)
T COG5657 79 LPDENVLIRDELFSLIIS---SSNQLQIQNALAVSRIARLDFPDEWPT--LVPDLLSLLSEKDMVTNENSLRVLHHI 150 (947)
T ss_pred CCccchHHHHHHHHHHHc---ccchHHHHHHHHHHHHHhccCcccchh--HHHHHHhhhcccchHHHHHHHHHHHHH
Confidence 566677999999999988 444444488999999999999999999 9999999997632 1223444444443
No 19
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=3.1e-06 Score=100.47 Aligned_cols=331 Identities=15% Similarity=0.108 Sum_probs=198.8
Q ss_pred CCCcchhhHHHHHHHHhhcccCcccc----cc-hHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHH
Q 002041 464 HNEWRPAEAALFCIRAISTYVSVVEA----EV-MPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLS 538 (976)
Q Consensus 464 ~~~w~~~Ea~L~~l~~i~e~~~~~~~----~~-l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~ 538 (976)
+++-+-+-||+++++.++..+.++-+ +. ++-++..+- -+.+++|..-++..+-.+++..... ....||+.+++
T Consensus 400 DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld-~~~~~rV~ahAa~al~nf~E~~~~~-~l~pYLd~lm~ 477 (1075)
T KOG2171|consen 400 DPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLD-STQNVRVQAHAAAALVNFSEECDKS-ILEPYLDGLME 477 (1075)
T ss_pred CCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhc-ccCchHHHHHHHHHHHHHHHhCcHH-HHHHHHHHHHH
Confidence 56677788999999999999887632 22 233333332 2347888888888777776654432 01137888887
Q ss_pred HHHcccCC--ChHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHH
Q 002041 539 ILTSGMST--SEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDA 616 (976)
Q Consensus 539 ~l~~~l~~--~~~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~ 616 (976)
-.+..+.. +..++..|..|+...++.+...+.||.+.+|..+.+++.+.++.. ..+-|-+.+|+++.+--+++.+..
T Consensus 478 ~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d-~r~LrgktmEcisli~~AVGke~F 556 (1075)
T KOG2171|consen 478 KKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKD-LRELRGKTMECLSLIARAVGKEKF 556 (1075)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchh-hHHHHhhHHHHHHHHHHHhhhhhh
Confidence 44433332 235999999999999999999999999999999999997643211 245677889999999999988877
Q ss_pred HHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhc----CCH
Q 002041 617 KKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRA----WDM 692 (976)
Q Consensus 617 ~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----~~~ 692 (976)
.+..+.+++-....-.+... .+ ...+. ..+...+.+.+.++ ..+.+++..++|-+....+.-+ .|+
T Consensus 557 ~~~a~eliqll~~~~~~~~~-----~d-d~~~s--y~~~~warmc~ilg--~~F~p~L~~Vmppl~~ta~~~p~~~~~d~ 626 (1075)
T KOG2171|consen 557 LPLAEELIQLLLELQGSDQD-----DD-DPLRS--YMIAFWARMCRILG--DDFAPFLPVVMPPLLKTARLDPDVALSDE 626 (1075)
T ss_pred hHhHHHHHHHHHhhcccchh-----hc-cccHH--HHHHHHHHHHHHhc--hhhHhHHHHHhHHHHHhhccCCcccCcCc
Confidence 77777766665443211111 11 11122 23455555555553 3455666666665544332210 000
Q ss_pred ---------------------------HH---HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCC----ccHHH
Q 002041 693 ---------------------------RT---MESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQ----PCFLY 738 (976)
Q Consensus 693 ---------------------------~v---~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~----~~~L~ 738 (976)
.+ .+.+|..+......++..+.|++.++++..+-...-..| .+++.
T Consensus 627 ~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~ 706 (1075)
T KOG2171|consen 627 EDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAE 706 (1075)
T ss_pred hhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 11 123666666655666777888887777733322222222 23333
Q ss_pred HHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHhhhcCcccCCCCCccHHHHHHHHHHHHhhCCCcccCcCChHH
Q 002041 739 LSSEVIKIFGS-DPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPS 811 (976)
Q Consensus 739 l~~~li~~~~~-~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~~~~l~~ 811 (976)
.+-.++..... -+.+...+.++...++...++.+.. .-.++++.++++=+..+++-+....+..+.++.
T Consensus 707 ~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~----E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~ 776 (1075)
T KOG2171|consen 707 SMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEE----EPETEVLSEILESFAECIEVMGDNCLNEDGLEA 776 (1075)
T ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhc----CCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHH
Confidence 33333332222 0113346666666666655555542 335778999999888888876655554443433
No 20
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=3.3e-05 Score=87.57 Aligned_cols=392 Identities=9% Similarity=0.058 Sum_probs=234.9
Q ss_pred hhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhhcccccCCccchhhhhhhhhhhHHHHHHhhcChhHHHHHHHH
Q 002041 372 VFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYI 451 (976)
Q Consensus 372 ~~~~~~~~Ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~ 451 (976)
.++|+..+.++.+++-|. ++ .-|-.| ..++.-+| ++|.+- ...+++..++...+
T Consensus 399 ~Lt~iV~qalp~ii~lm~-D~--sl~Vkd-TaAwtlgr-------------------I~d~l~---e~~~n~~~l~~~l~ 452 (859)
T KOG1241|consen 399 KLTPIVIQALPSIINLMS-DP--SLWVKD-TAAWTLGR-------------------IADFLP---EAIINQELLQSKLS 452 (859)
T ss_pred hhhHHHhhhhHHHHHHhc-Cc--hhhhcc-hHHHHHHH-------------------HHhhch---hhcccHhhhhHHHH
Confidence 457788888888887665 32 223321 22232222 444443 33345656666666
Q ss_pred HHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCccc---------ccchHHHhhhccCC---C--CcHHHHHHHHHHHH
Q 002041 452 KFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE---------AEVMPQVMALLPKL---P--QQPQLLQTVCLTIG 517 (976)
Q Consensus 452 ~l~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~~---------~~~l~~l~~~l~~~---~--~~~~v~~t~~~~ig 517 (976)
.+.+.+. ..-+-...++|++..+++.+.+.. +++.+.|++.|... + ....+|.++.+.++
T Consensus 453 ~l~~gL~------DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALm 526 (859)
T KOG1241|consen 453 ALLEGLN------DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALM 526 (859)
T ss_pred HHHHHhh------hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHH
Confidence 5555442 344567788889988887664321 23455666665422 2 24678999999888
Q ss_pred hcHHHHhhC--CCCcchHHHHHHHHHcccC-----CC-----hHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhh
Q 002041 518 AYSKWFDAA--SSDPSILASVLSILTSGMS-----TS-----EDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN 585 (976)
Q Consensus 518 ~y~~~~~~~--p~~~~~l~~~l~~l~~~l~-----~~-----~~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~ 585 (976)
..-...... |....+...++.-+-+.+. .. .+++..-|..|..+.........+..+++|+.+.++++
T Consensus 527 ElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~ 606 (859)
T KOG1241|consen 527 ELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFE 606 (859)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHc
Confidence 664432221 1000122222222222222 11 14888888899999988888888999999999999997
Q ss_pred ccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcC
Q 002041 586 GEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN 665 (976)
Q Consensus 586 ~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 665 (976)
.+. +.-..+.++-+++.++..++ ....+|+..+..-+...+++... ......+++.++.+++.++
T Consensus 607 s~~----s~~v~e~a~laV~tl~~~Lg-~~F~kym~~f~pyL~~gL~n~~e----------~qVc~~aVglVgdl~raL~ 671 (859)
T KOG1241|consen 607 SKR----SAVVHEEAFLAVSTLAESLG-KGFAKYMPAFKPYLLMGLSNFQE----------YQVCAAAVGLVGDLARALE 671 (859)
T ss_pred CCc----cccchHHHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHhhcchH----------HHHHHHHHHHHHHHHHHHH
Confidence 632 23346677778888888876 34556776665555555433211 1123346778888888875
Q ss_pred CcccHHHHHHHHhHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCCc-----------
Q 002041 666 HPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQP----------- 734 (976)
Q Consensus 666 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~----------- 734 (976)
..+.++...++..+.+.++.-..+-++.-.+..+++.+.-..|.+|.||+..++..+.+.-+....+
T Consensus 672 --~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~ 749 (859)
T KOG1241|consen 672 --DDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDE 749 (859)
T ss_pred --hhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHH
Confidence 3466677788888877777655555666778999999999999999999999988877655322211
Q ss_pred ---cHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhhhcCcccCCCCCc-cHHHHHHHHHHHHhhCCCcccC----c
Q 002041 735 ---CFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPD-VADDCFLLASRCIRYCPQLFIP----S 806 (976)
Q Consensus 735 ---~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pD-~~~~~f~l~~~~~~~~p~~~~~----~ 806 (976)
.+|....-++..+|.+.. ..++.+++.++++++.......+..| +..+-.++++.+...+|..+.+ +
T Consensus 750 LRe~~leay~gi~qglk~~~~-----~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~~~~ 824 (859)
T KOG1241|consen 750 LREGILEAYTGIIQGLKTHAD-----VMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKLFLDE 824 (859)
T ss_pred HHHHHHHHHHHHHHHhhcccc-----hhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhhhcch
Confidence 134455555555554321 01233445566666653211122222 5777888999999887754432 3
Q ss_pred CChHHHHHHHH
Q 002041 807 SVFPSLVDCSM 817 (976)
Q Consensus 807 ~~l~~~~~~~~ 817 (976)
+.+..+++-+.
T Consensus 825 ~~i~~~L~~~~ 835 (859)
T KOG1241|consen 825 DWIKDFLNEGR 835 (859)
T ss_pred HHHHHHHHHhh
Confidence 44445444443
No 21
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.98 E-value=0.00017 Score=83.52 Aligned_cols=602 Identities=13% Similarity=0.116 Sum_probs=286.6
Q ss_pred CchHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHH
Q 002041 52 SNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLR 131 (976)
Q Consensus 52 ~~~~v~ffaa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~ 131 (976)
.+-..||.|..-|.+.++++-..|+.+.-.-+-..++++|.. .+.-|.|---.+++-++.+...++-.+ .++.+.
T Consensus 17 sDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D---~ngEVQnlAVKClg~lvsKvke~~le~--~ve~L~ 91 (1233)
T KOG1824|consen 17 SDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLED---KNGEVQNLAVKCLGPLVSKVKEDQLET--IVENLC 91 (1233)
T ss_pred CCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhc---cCcHHHHHHHHHHHHHHhhchHHHHHH--HHHHHh
Confidence 344589999999999999998888877766666777888766 455566655567777776655433333 344444
Q ss_pred HhcCCCCCc-HHH----HHHHHhhcccccccccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhhh----HHHHHHHHHH
Q 002041 132 DEMNSHPEF-VPG----FLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----ELKEQVLEAF 202 (976)
Q Consensus 132 ~~l~~~~~~-~~~----~L~~L~~l~EE~~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~----~~~~~~l~~~ 202 (976)
..+-++.++ .+. +......+|--.++ . +++. -.+.+.+.+.+..... .++-.++..+
T Consensus 92 ~~~~s~keq~rdissi~Lktvi~nl~P~~~~-~--la~t-----------V~~~~t~~l~~~i~~qe~~sai~~e~lDil 157 (1233)
T KOG1824|consen 92 SNMLSGKEQLRDISSIGLKTVIANLPPSSSS-F--LAAT-----------VCKRITPKLKQAISKQEDVSAIKCEVLDIL 157 (1233)
T ss_pred hhhccchhhhccHHHHHHHHHHhcCCCcccc-c--cccH-----------HHHHHHHHHHHHhhhcccchhhHHHHHHHH
Confidence 332222221 122 12222222221111 1 1111 1122222333322221 2333444444
Q ss_pred HHhhh-ccCCCCCcccccchhHHHHHhcCCCc--chHHHHHHHHHHHhhhhccCCCCCccCchhHHHHHHHHHHhhHHHh
Q 002041 203 ASWLR-LKHRIPGSVLASHPLVLTALSSLHSE--ILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHL 279 (976)
Q Consensus 203 ~sWi~-~~~~i~~~~l~~~~l~~~~~~~L~~~--~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~v~~l~~~~ 279 (976)
.-.+. +|.-+|. ....++..+.-.|+.+ ..+..|+-++..+...... +-...+++.+..++
T Consensus 158 ~d~lsr~g~ll~~---fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~------~ly~~li~~Ll~~L------- 221 (1233)
T KOG1824|consen 158 ADVLSRFGTLLPN---FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNR------DLYVELIEHLLKGL------- 221 (1233)
T ss_pred HHHHHhhcccCcc---hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCH------HHHHHHHHHHHhcc-------
Confidence 43322 2211111 0112333334445554 3567788888887754421 01223444433321
Q ss_pred hhccCCHHHHHHHHHHHHHHhhHHHHHHhcCCchhHHHHHHHHhhc---cCCCcchhhhhHHHHHHHHHHhccccccccc
Q 002041 280 TDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVA---SHPEYDIASMTFNFWHSLQVILTKRDSYISF 356 (976)
Q Consensus 280 ~~~~~d~e~~~~~~~l~~~~~~~~~~~l~~~~~~~~~ll~~lL~~~---~~~~~~vs~~~l~fW~~l~~~l~~~~~~~~~ 356 (976)
... ......+.+...+.+++-..-.-+. .+...++.++..++ +..+++..+.+++-...|...-.
T Consensus 222 ~~~-~q~~~~rt~Iq~l~~i~r~ag~r~~---~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp-------- 289 (1233)
T KOG1824|consen 222 SNR-TQMSATRTYIQCLAAICRQAGHRFG---SHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCP-------- 289 (1233)
T ss_pred CCC-CchHHHHHHHHHHHHHHHHhcchhh---cccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhCh--------
Confidence 111 1122334444555554433222221 23445566666666 45578888887776555544221
Q ss_pred CcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCCC-hhhhHHh------HhhhhcccccCCccchhhhhhhhh
Q 002041 357 GNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLS-LEDLKEF------KHTRYDLACCSSSTLTESVMLIAV 429 (976)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~d~~~~~-~d~~~~f------~~~R~~~~~~~~~~~~~~~~~~~~ 429 (976)
....|+..++++.++.+..|++.|..-+ +|+..+| .++-..+.-|-..+ |+.|++.
T Consensus 290 --------------~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~S---WkVRRaA 352 (1233)
T KOG1824|consen 290 --------------KEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMS---WKVRRAA 352 (1233)
T ss_pred --------------hhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchh---HHHHHHH
Confidence 1245677788899999999988654222 1111111 11111111122222 3566666
Q ss_pred hhHHHHHHhhcChhHHHHHHHHHHHHhHhhc---CCCCCCcchhhHHHHHHHHhhcccCcccccchHHHhhhccCCCCcH
Q 002041 430 ADVLIDAASVLGGDATLKILYIKFVEGVACC---GNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQP 506 (976)
Q Consensus 430 ~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~---~~~~~~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~~~~~~~ 506 (976)
+.++..+..-. .+++..+++.+.-.+-.- ..++.--.-+++.+-++..+..-.+- +..|.
T Consensus 353 aKcl~a~IsSR--~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~---------------~~d~d 415 (1233)
T KOG1824|consen 353 AKCLEAVISSR--LEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEV---------------LADND 415 (1233)
T ss_pred HHHHHHHHhcc--HHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCccc---------------ccCch
Confidence 66666543222 235555555443221100 00000001112222222211111100 00011
Q ss_pred HHHHHHHHHHHhcH--HHHhhCCCCcchHHHHHHHHHcccCCCh-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHH
Q 002041 507 QLLQTVCLTIGAYS--KWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTA 583 (976)
Q Consensus 507 ~v~~t~~~~ig~y~--~~~~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~ 583 (976)
..+. |.-. .|.-.. -.+.++..+-+-+++.. +.+..+-..+..++...+..+.++++.++..+...
T Consensus 416 ~~e~------~g~~s~~~~L~~-----~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~ 484 (1233)
T KOG1824|consen 416 AMEQ------GGTPSDLSMLSD-----QVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYS 484 (1233)
T ss_pred hhhc------cCCccchHHHHh-----hhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhh
Confidence 1111 0000 011110 11222222222233221 34566667788888888888888888877666555
Q ss_pred hhccCCCCCCHHhHHHHHHHHHHHH---hcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHH
Q 002041 584 VNGEGSLKVSAEDSLHLVEALSMVI---TELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYI 660 (976)
Q Consensus 584 ~~~~~~~~l~~~~~~~l~eai~~vi---~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 660 (976)
++.. +. .-..-+++++++. ..-|++...+++..+..|++...++-. .+--..+|-+...+
T Consensus 485 l~Dk-----Ss-ss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~f-----------yKisaEAL~v~~~l 547 (1233)
T KOG1824|consen 485 LNDK-----SS-SSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPF-----------YKISAEALLVCQQL 547 (1233)
T ss_pred cCCc-----cc-hHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCch-----------HhhhHHHHHHHHHH
Confidence 5421 11 1122344554443 345677888888888888765543211 11112233333333
Q ss_pred hhhcCC---c--ccHHHHHHHHhHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCCcc
Q 002041 661 FRYVNH---P--EAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPC 735 (976)
Q Consensus 661 ~~~~~~---~--~~~~~~~~~~~~~l~~ll~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ 735 (976)
++.+.. | -++.+++..+.....+-+..-..|.+|.|++..+++..+..+|.+....+|..+..+....+.. ..
T Consensus 548 vkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nE--iT 625 (1233)
T KOG1824|consen 548 VKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNE--IT 625 (1233)
T ss_pred HHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhch--hH
Confidence 333322 1 1123344455544445555555688999999999999999999888888888888777666542 23
Q ss_pred HHHHHHHHHHHhCCCC--cchHHHHHHHHHH
Q 002041 736 FLYLSSEVIKIFGSDP--SCASYLHNLIEAL 764 (976)
Q Consensus 736 ~L~l~~~li~~~~~~~--~~~~~l~~~~~~l 764 (976)
-+.....+...++..- +..+.++.++..+
T Consensus 626 Rl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l 656 (1233)
T KOG1824|consen 626 RLTAVKALTLIAMSPLDIDLSPVLTEILPEL 656 (1233)
T ss_pred HHHHHHHHHHHHhccceeehhhhHHHHHHHH
Confidence 3334444444444321 1234555554443
No 22
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.92 E-value=2.9e-09 Score=89.78 Aligned_cols=67 Identities=22% Similarity=0.373 Sum_probs=63.3
Q ss_pred HHHHHHHHhcC-hhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCC--------CCChhhHHHHHHHHHHHHH
Q 002041 26 ADRWLQDFQHT-IDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVE--------ELPSEAVRGLQDSLNTLLK 92 (976)
Q Consensus 26 A~~~L~~~q~s-~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~--------~l~~~~~~~lr~~Ll~~l~ 92 (976)
|+++|.+++++ |++|..+..++.+++.+.++|+||+++|+++|+++|. .+|++++..||+.|++.+.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 78999999999 8999999999977667899999999999999999999 9999999999999999875
No 23
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=1.1e-05 Score=89.79 Aligned_cols=344 Identities=13% Similarity=0.153 Sum_probs=196.5
Q ss_pred HHHHHhhcccCcc-cccchHHHhhhc-cC-CCCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCC-hHH
Q 002041 475 FCIRAISTYVSVV-EAEVMPQVMALL-PK-LPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDT 550 (976)
Q Consensus 475 ~~l~~i~e~~~~~-~~~~l~~l~~~l-~~-~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~-~~v 550 (976)
|-++..|..+... .++++..++.-+ .. +..+.+|..++|..+..+-+- ..++...++..++.-+..++..= ++=
T Consensus 456 WTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~--A~~eLVp~l~~IL~~l~~af~kYQ~KN 533 (885)
T KOG2023|consen 456 WTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEE--AGEELVPYLEYILDQLVFAFGKYQKKN 533 (885)
T ss_pred eeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHHHHHHhhcc
Confidence 3344444443322 234544444433 32 345788999999877655431 12221136666776666665421 111
Q ss_pred HHHHHHHHHHHHHHhhhhhh--cC----HHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHH---HHHHHH
Q 002041 551 AAAAALAFRHICDDCRKKLC--GY----LDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVD---AKKALE 621 (976)
Q Consensus 551 ~~~A~~al~~l~~~~~~~L~--~~----l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~---~~~~l~ 621 (976)
-.---.|+..|++.++++|. .| ++++++.+..+- -+.++.--++|++++|.+++..-- +.+...
T Consensus 534 LlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~ls-------d~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~ 606 (885)
T KOG2023|consen 534 LLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLS-------DSDKDLFPLLECLSSIASALGVGFLPYAQPVYQ 606 (885)
T ss_pred eehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcC-------cccchHHHHHHHHHHHHHHHhccccccCHHHHH
Confidence 22345678999999998886 23 455556655542 234567789999999999864211 112233
Q ss_pred HhhhHHHHHHHHHHhcCCC-cccccCcchhhhHHHHHHHHhhhcCCc-ccHHHHHHHHhHHHHHHHHhhcCCHHHHHHHH
Q 002041 622 MLCLPVVTPLQEIINQGPE-ILQKKHPRDLTVHIDRFAYIFRYVNHP-EAVADAIQRLWPIFKAIFDIRAWDMRTMESLC 699 (976)
Q Consensus 622 ~ll~p~~~~l~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~ll~~~~~~~~v~e~~~ 699 (976)
+-+.-+-+.++........ ..+.....-++..|+.++.+..++.+. ++.+.- ..+..++...+. ..-++|++.++
T Consensus 607 Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~-snl~~lll~C~~--D~~peVRQS~F 683 (885)
T KOG2023|consen 607 RCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQ-SNLLDLLLQCLQ--DEVPEVRQSAF 683 (885)
T ss_pred HHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhh-ccHHHHHHHHhc--cCChHHHHHHH
Confidence 3222222222222222111 111111112455788899888887541 222210 223333333222 13478999999
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCCc---cHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhhhcCcc
Q 002041 700 RACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQP---CFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIE 776 (976)
Q Consensus 700 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~---~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~ 776 (976)
.+++.+...+.+++.|.+..++..+...+.....+ ...|.++.+..++|.+ ..+.+..+++.++ ..++.
T Consensus 684 ALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~--~~~~v~~vl~~L~----~iin~-- 755 (885)
T KOG2023|consen 684 ALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLK--MKQYVSPVLEDLI----TIINR-- 755 (885)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchh--hhhHHHHHHHHHH----HHhcc--
Confidence 99999998888888888888887777655543333 3588999999999976 5566666555544 22332
Q ss_pred cCCCCCccHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHhc-ccCCchhHHHHHHHHHHhhcc
Q 002041 777 EFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGI-TVQHREASNSILTFLSDIFDL 841 (976)
Q Consensus 777 ~~~~~pD~~~~~f~l~~~~~~~~p~~~~~~~~l~~~~~~~~~~l-~~~~~~~~~~~~~fl~~l~~~ 841 (976)
....-.+.+..---++++...+|..+.+ .++.+++=...++ +..+.+...+|+.=+..+++.
T Consensus 756 -~~~~~tllENtAITIGrLg~~~Pe~vAp--~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~v 818 (885)
T KOG2023|consen 756 -QNTPKTLLENTAITIGRLGYICPEEVAP--HLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINV 818 (885)
T ss_pred -cCchHHHHHhhhhhhhhhhccCHHhcch--hHHHHHHHHHHHhcccccchhHHHHHHHHHHheee
Confidence 1112224444444577777888988765 6777775444434 456777788888888888865
No 24
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=98.46 E-value=3.6e-05 Score=84.86 Aligned_cols=207 Identities=18% Similarity=0.254 Sum_probs=116.6
Q ss_pred HHHHHHhhccCC-CcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHhh--HHHHHHHHH-HHHhhccCCC
Q 002041 317 IVHALLEVASHP-EYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVF--RSAYESLVS-LVSFRVQYPQ 392 (976)
Q Consensus 317 ll~~lL~~~~~~-~~~vs~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Ll~-~l~~k~~~p~ 392 (976)
+.+++......+ .+.+...++.|...+.+.. .....| +|++.+++. +++..|.+-+
T Consensus 142 vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~--------------------~~~~lf~~~~~L~~Iie~VI~Pnl~~~e 201 (370)
T PF08506_consen 142 VWNLLTKISQQPKYDILVSKALQFLSSVAESP--------------------HHKNLFENKPHLQQIIEKVIFPNLCLRE 201 (370)
T ss_dssp HHHHHTC--SSGGGHHHHHHHHHHHHHHHTSH--------------------HHHTTT-SHHHHHHHHHHTHHHHHS--H
T ss_pred HHHHHHHhhhcccccHHHHHHHHHHHHHHcch--------------------hHHHHhCCHHHHHHHHHHhccCccCCCH
Confidence 344444444333 4566678888855433311 111122 567777765 4455666644
Q ss_pred -CCCCCChhhhHHhHhhhhcccc-cCCccchhhhhhhhhhhHHHHHHhhcChhHHHHHHHHHHHHhHhh-cCCCCCCcch
Q 002041 393 -DYQDLSLEDLKEFKHTRYDLAC-CSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVAC-CGNKHNEWRP 469 (976)
Q Consensus 393 -d~~~~~~d~~~~f~~~R~~~~~-~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~-~~~~~~~w~~ 469 (976)
|.+-|++| ..|| .|+++.. |. ...|.++.|+++.++...+ +.+.+.+.+.+++.+.+ ..+++.+|+.
T Consensus 202 ~D~ElfEdd-P~EY--Irrd~e~sd~------~TrR~AA~dfl~~L~~~~~-~~v~~i~~~~i~~~l~~y~~~~~~~w~~ 271 (370)
T PF08506_consen 202 EDEELFEDD-PEEY--IRRDLEGSDS------DTRRRAACDFLRSLCKKFE-KQVTSILMQYIQQLLQQYASNPSNNWRS 271 (370)
T ss_dssp HHHHHHHHS-HHHH--HHHHSCSS---------SHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-TTT-HHH
T ss_pred HHHHHHccC-HHHH--HHhhcccccc------CCcHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHhhCCcccHHH
Confidence 33334332 3333 2333221 11 1346678999999887766 44555555555544431 0123678999
Q ss_pred hhHHHHHHHHhhcccCccc------ccc--hHHHhhh--cc----CCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHH
Q 002041 470 AEAALFCIRAISTYVSVVE------AEV--MPQVMAL--LP----KLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILAS 535 (976)
Q Consensus 470 ~Ea~L~~l~~i~e~~~~~~------~~~--l~~l~~~--l~----~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~ 535 (976)
.++|++.+++++....... ++. +..++.. +| ....||.++..+|+.+..|..-+.. +.+..
T Consensus 272 KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~-----~~l~~ 346 (370)
T PF08506_consen 272 KDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPK-----EQLLQ 346 (370)
T ss_dssp HHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-H-----HHHHH
T ss_pred HHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCH-----HHHHH
Confidence 9999999999987664321 111 2333332 22 2335899999999999998876543 27888
Q ss_pred HHHHHHcccCCCh-HHHHHHHHHH
Q 002041 536 VLSILTSGMSTSE-DTAAAAALAF 558 (976)
Q Consensus 536 ~l~~l~~~l~~~~-~v~~~A~~al 558 (976)
+++.+.+++.++. .|..-||.|+
T Consensus 347 ~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 347 IFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhhhhhC
Confidence 9999999998875 4777777764
No 25
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=0.057 Score=66.86 Aligned_cols=180 Identities=15% Similarity=0.161 Sum_probs=114.3
Q ss_pred HHhhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhhcccccCCccchhhhhhhhhhhHHHHHHhhcChh--HHH-
Q 002041 370 LQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGD--ATL- 446 (976)
Q Consensus 370 ~~~~~~~~~~Ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~--~~l- 446 (976)
.+...|++.+|++.++ +-+|++|. . +.+.+.+++..+=+| .+.
T Consensus 989 ~~kl~p~l~kLIPrLy-RY~yDP~~----------------~-----------------Vq~aM~sIW~~Li~D~k~~vd 1034 (1702)
T KOG0915|consen 989 GEKLEPYLKKLIPRLY-RYQYDPDK----------------K-----------------VQDAMTSIWNALITDSKKVVD 1034 (1702)
T ss_pred HHhhhhHHHHhhHHHh-hhccCCcH----------------H-----------------HHHHHHHHHHHhccChHHHHH
Confidence 4567899999999887 56676651 1 444455555443322 111
Q ss_pred HHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCccc-ccchHHHhhhccCCC--CcHHHHHHHHH---HHHhcH
Q 002041 447 KILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE-AEVMPQVMALLPKLP--QQPQLLQTVCL---TIGAYS 520 (976)
Q Consensus 447 ~~l~~~l~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~~-~~~l~~l~~~l~~~~--~~~~v~~t~~~---~ig~y~ 520 (976)
.++.+.+.+.+.+.. +..||-+||++.++.-+-.+=+.++ .+.+|++...+-+.- .+..||.++=. ++++.+
T Consensus 1035 ~y~neIl~eLL~~lt--~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~ 1112 (1702)
T KOG0915|consen 1035 EYLNEILDELLVNLT--SKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLC 1112 (1702)
T ss_pred HHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222334444443322 5789999999999998876643332 356777766654332 24556665443 444433
Q ss_pred HHHh--hCCC-CcchHHHHHHHHH-ccc-CCChHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhh
Q 002041 521 KWFD--AASS-DPSILASVLSILT-SGM-STSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN 585 (976)
Q Consensus 521 ~~~~--~~p~-~~~~l~~~l~~l~-~~l-~~~~~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~ 585 (976)
-=+. .|+. ..+.+..+++++. .|+ +.-+.|+..+...+.++++..+..|.||++.++-.+.+..+
T Consensus 1113 vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s 1182 (1702)
T KOG0915|consen 1113 VRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYS 1182 (1702)
T ss_pred hhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHcc
Confidence 2221 1222 1368889999986 444 33335999999999999999999999999999988888775
No 26
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.12 E-value=0.0022 Score=70.75 Aligned_cols=378 Identities=11% Similarity=0.076 Sum_probs=182.4
Q ss_pred cchHHHhhhccC-CCC----cHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCCh-HHHHHHHHHHHHHHH
Q 002041 490 EVMPQVMALLPK-LPQ----QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICD 563 (976)
Q Consensus 490 ~~l~~l~~~l~~-~~~----~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~ 563 (976)
+.+|.++++|.+ -+. .--+..++...+.-|+..-..+ .+.+++.|+-+.++.+. .=+.+|..||..+.+
T Consensus 321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~-----i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~ 395 (858)
T COG5215 321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDK-----IMRPVLGFVEQNIRSESWANREAAVMAFGSVMH 395 (858)
T ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhH-----hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhc
Confidence 367889998874 331 1123333444444455444433 68889999999998775 357789999999886
Q ss_pred H-hhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHH-HHHHhcCCCc
Q 002041 564 D-CRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPL-QEIINQGPEI 641 (976)
Q Consensus 564 ~-~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l-~~~~~~~~~~ 641 (976)
. |...+.+++++.+..+.+..+.+ .+ .....--.++|.+...++..-- +- .-+.|.+... .-+.+.+.-
T Consensus 396 gp~~~~lT~~V~qalp~i~n~m~D~---~l--~vk~ttAwc~g~iad~va~~i~-p~--~Hl~~~vsa~liGl~D~p~~- 466 (858)
T COG5215 396 GPCEDCLTKIVPQALPGIENEMSDS---CL--WVKSTTAWCFGAIADHVAMIIS-PC--GHLVLEVSASLIGLMDCPFR- 466 (858)
T ss_pred CccHHHHHhhHHhhhHHHHHhcccc---ee--ehhhHHHHHHHHHHHHHHHhcC-cc--ccccHHHHHHHhhhhccchH-
Confidence 5 77788888888888877776531 22 2333445556665555432100 00 0011111110 001110000
Q ss_pred ccccCcchhhhHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 002041 642 LQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAIL 721 (976)
Q Consensus 642 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~ 721 (976)
. -..........+-++...+.. +.+..++...+...+...-+.-.++...+-..+..++.++..+...+.+++..+.
T Consensus 467 ~-~ncsw~~~nlv~h~a~a~~~~--~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~ 543 (858)
T COG5215 467 S-INCSWRKENLVDHIAKAVREV--ESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFY 543 (858)
T ss_pred H-hhhHHHHHhHHHhhhhhhccc--cchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 0 000011111222233322221 3344444444444333333333444455556666777666554444444444444
Q ss_pred HHHHHHHhh------------------cCCccHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhhhcCcccCCCCCc
Q 002041 722 EEIQGLYQQ------------------HQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPD 783 (976)
Q Consensus 722 ~~l~~~~~~------------------~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pD 783 (976)
+++...... .-.+.++.++..+|..++.+ +.+.-+++++-++ ..+++......+-|
T Consensus 544 ~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~--ie~v~D~lm~Lf~----r~les~~~t~~~~d 617 (858)
T COG5215 544 DYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRD--IEDVEDQLMELFI----RILESTKPTTAFGD 617 (858)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC--cccHHHHHHHHHH----HHHhccCCchhhhH
Confidence 333322211 01233455555555555543 1121111111111 11121100111122
Q ss_pred cHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHhcccCCchhHHHHHHHHHHhhcccCCCCchhhHHHHHHHHhhchH
Q 002041 784 VADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGA 863 (976)
Q Consensus 784 ~~~~~f~l~~~~~~~~p~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~l~~~~~~~~~~~~~~~~~~~~~~~g~ 863 (976)
+--+.=+|...+-+.+. .+.+.++.+...++...++....++..|..++.+..+ +-+..+.-
T Consensus 618 V~~aIsal~~sl~e~Fe------~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~------------~df~~y~d 679 (858)
T COG5215 618 VYTAISALSTSLEERFE------QYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLG------------TDFNIYAD 679 (858)
T ss_pred HHHHHHHHHHHHHHHHH------HHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhh------------hhHHHHHH
Confidence 22221122221111111 1234455566667777889999999999998876431 11223333
Q ss_pred HHHHHHHHHcccC-CCCCCcccHHHHHHHHHHHhhHHHHHHHHHHH
Q 002041 864 SITRILIASLTGA-LPSSRLETVTYALLALTRAYGVRSLEWAKESV 908 (976)
Q Consensus 864 ~lv~~ll~~l~~~-~~~~~~~~~~~~L~~l~~~~~~~~~~wl~~~l 908 (976)
.++..+...+... ..|..-+.+=.++.-++..-+..|..||..++
T Consensus 680 ~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im 725 (858)
T COG5215 680 VLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIM 725 (858)
T ss_pred HHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4555666676443 35555566667777777777777777777655
No 27
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.0021 Score=70.45 Aligned_cols=401 Identities=14% Similarity=0.052 Sum_probs=213.9
Q ss_pred HHHHHHHHHcccCCChHHHHHHHHHHHHHHHH-hhhhhhcCHHHHHHHHHHHhhccCC-CCCCHHhHHHHHHHHHHHHhc
Q 002041 533 LASVLSILTSGMSTSEDTAAAAALAFRHICDD-CRKKLCGYLDGLYNVYRTAVNGEGS-LKVSAEDSLHLVEALSMVITE 610 (976)
Q Consensus 533 l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~-~~~~L~~~l~~ll~~~~~~~~~~~~-~~l~~~~~~~l~eai~~vi~~ 610 (976)
+..++.-+..+=.+.. +..-|..++..++++ -++.++..-+.+++..++..+.... .-.+...+..++.++...--+
T Consensus 297 i~kVla~lvn~~sE~~-L~~Da~q~l~~lVe~~~~~~vvv~~e~~~~laeq~~s~~~~l~i~s~p~~~~lmkaLvl~gfa 375 (748)
T KOG4541|consen 297 IGKVLADLVNGESETA-LVPDALQSLFVLVEEANNHPVVVLSESIIKLAEQCLSAEMRLSIFSPPLMEALMKALVLWGFA 375 (748)
T ss_pred HHHHHHHHhcccchhh-hhHHHHHHHHHHHHHhccCCeeeccHHHHHHHHHHhccCCcccccCchHHHHHHHHHHHHHHH
Confidence 3444544444433334 777777788888877 4556777777788888887764211 234678899999999766544
Q ss_pred -CChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCCcccHHHHHHHHhHHHHH---HHH
Q 002041 611 -LPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKA---IFD 686 (976)
Q Consensus 611 -~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~---ll~ 686 (976)
+..++..++....++|+-+++-..+++..... ...+++..|++...+....+ .+-....++-++-.+.. ++.
T Consensus 376 ~~d~e~~~n~~~~~LqpL~~Rf~~~~nq~~q~~---~~~~Ii~~l~~~~g~a~a~q-~d~~~~Lf~fL~~~~~~c~glm~ 451 (748)
T KOG4541|consen 376 YLDLEEECNLGSNKLQPLPSRFFTYFNQHNQGK---FVLDIIVRLSLTSGTAYAGQ-KDLQRSLFQFLVLSAYGCRGLMA 451 (748)
T ss_pred HhhHHHHHHHHHhhccccHHHHHHHhcccchhh---HHHHHHHHHHHhcccccccc-chhHHHHHHHHHHHHhhhhhHHH
Confidence 44456679999999999999999998874211 12234344444433332221 12222233333333222 233
Q ss_pred hhcCCHHHHHHHHHHHHHHHHH----hhhhhh--hhHHHHHHHHHHHHhhcC-----------------CccHHHHHHHH
Q 002041 687 IRAWDMRTMESLCRACKYAVRT----SKRFMG--ITIGAILEEIQGLYQQHQ-----------------QPCFLYLSSEV 743 (976)
Q Consensus 687 ~~~~~~~v~e~~~~~~~~~~~~----~~~~~~--~~l~~l~~~l~~~~~~~~-----------------~~~~L~l~~~l 743 (976)
.+...++++..+...+-..-.. .+..-. .+....+ .+.+.|.+.. ..-++.+++..
T Consensus 452 s~~~~~~~v~~i~~~~vdvs~k~~~y~~~e~~~~~ly~scl-ql~~~y~~~~~~r~rt~~a~~Ee~~sdl~lvl~lL~n~ 530 (748)
T KOG4541|consen 452 SNQYVKDLVAHITSSLVDVSNKSDLYNLAEQPDIILYVSCL-QLERLYGAASATRPRTQRAIYEEGLSDLNLVLRLLENY 530 (748)
T ss_pred HhhccHHHHHHHHHHHHHhhhhhhhhccccChhHHHHHHHH-HHHHHhhhhcccCcchHHHHHHhhhhHHHHHHHHHHHH
Confidence 3444455554444443321111 110000 0001111 1122222211 11133333333
Q ss_pred HH-HhCCCCcchHHH---HHHHHHHHHHHHhhhcCcccCCCCCccHHHHHHHHHHHHhhCCCcccC--cCChHHHHHHHH
Q 002041 744 IK-IFGSDPSCASYL---HNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIP--SSVFPSLVDCSM 817 (976)
Q Consensus 744 i~-~~~~~~~~~~~l---~~~~~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~--~~~l~~~~~~~~ 817 (976)
.. .|..+..-.+.. .++.--=+.-.+.+++ .+.-..|.+.-+||+++.-+..+.|..+-+ ...+.++.+|.-
T Consensus 531 lskdF~~~s~e~~~~~G~a~VV~~gl~~ilplm~--~~lLk~P~lc~~~~~lIty~ce~~pe~la~~~~~l~~sl~qc~~ 608 (748)
T KOG4541|consen 531 LSKDFSSDSIETQSTNGIAQVVYFGLHIILPLMT--LELLKYPKLCFDDVDLITYMCERAPEALASYHYKLKNSLNQCSG 608 (748)
T ss_pred hhhhhhccccccccccCcceEEEeeHHHHHHHHH--HHHHhchHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHhhc
Confidence 32 122111000000 0000000011122222 223467999999999999999999988754 345677777766
Q ss_pred Hhcc-cCCchhHHHHHHHHHHhhcccCC-CCchhhHHHHHHHHhhchHHHHHHHHHHc-ccCCCCCCcccHHHHHHHHHH
Q 002041 818 IGIT-VQHREASNSILTFLSDIFDLAKS-CKGEEFLSVRDSVIIPRGASITRILIASL-TGALPSSRLETVTYALLALTR 894 (976)
Q Consensus 818 ~~l~-~~~~~~~~~~~~fl~~l~~~~~~-~~~~~~~~~~~~~~~~~g~~lv~~ll~~l-~~~~~~~~~~~~~~~L~~l~~ 894 (976)
.+++ ..+.........-+..+-+.++. +..+.. .++.+ .+.+.+|.-+ ......+.....++.|+.+..
T Consensus 609 LGMTge~~s~~l~~~~e~v~hfgspankgrcTqnl-----afL~~---efL~tvf~~ll~~~~~t~l~s~a~~Aly~LI~ 680 (748)
T KOG4541|consen 609 LGMTGESHSAGLHTDPEGVFHFGSPANKGRCTQNL-----AFLSR---EFLRTVFHFLLFEDYSTDLVSTAADALYPLIL 680 (748)
T ss_pred cCCccccchHhhccChHhhhccccccccccccccH-----HHHHH---HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 6666 23333333444444444443321 111111 12222 2334455444 334566788899999999999
Q ss_pred HhhHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--------cCCCchhhhHHHHHHHHHHHh
Q 002041 895 AYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAA--------SGVDVNAAMAPVEELSDVCRR 953 (976)
Q Consensus 895 ~~~~~~~~wl~~~l~~~p~~~~~~~~k~~f~~~l~~~~--------~~~~~~~~~~~l~~F~~~cr~ 953 (976)
..|..+..+..+.++ ++..|..|+++-+++.... +++++.+||+-+.+|..-.-|
T Consensus 681 ~e~~~y~elvneL~s----kq~np~~~qrLa~Af~~Lt~sn~~psldR~~~~~Frk~le~Fl~~V~G 743 (748)
T KOG4541|consen 681 CEPNLYQELVNELIS----KQANPNFKQRLANAFQVLTTSNQLPSLDRLNYQRFRKNLENFLVEVLG 743 (748)
T ss_pred hCHHHHHHHHHHHHh----hccChHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHhhc
Confidence 999999998887663 3457888999888766552 334567899999999865443
No 28
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.61 E-value=0.24 Score=57.01 Aligned_cols=364 Identities=12% Similarity=0.166 Sum_probs=181.8
Q ss_pred hhhHHHHHHhhcChhHH----HHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcccccchHHHhhhcc-CCC
Q 002041 429 VADVLIDAASVLGGDAT----LKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KLP 503 (976)
Q Consensus 429 ~~d~l~~~~~~l~~~~~----l~~l~~~l~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~-~~~ 503 (976)
+.+++..+...+|...+ -+.++..+--+.+.. + .+.-+.+.+++.+...+..-..+++|+|.+.+. .+.
T Consensus 736 ~~etv~ri~~~lg~~diderleE~lidgil~Afqeq---t---t~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLn 809 (1172)
T KOG0213|consen 736 VAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQ---T---TEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLN 809 (1172)
T ss_pred HHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhc---c---cchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhc
Confidence 77788888877775322 223333222222110 0 111256778888888777666788999988754 343
Q ss_pred -CcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCC--ChHHHHHHHHHHHHHHHHhh-hhhhcCHHHHHHH
Q 002041 504 -QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST--SEDTAAAAALAFRHICDDCR-KKLCGYLDGLYNV 579 (976)
Q Consensus 504 -~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~--~~~v~~~A~~al~~l~~~~~-~~L~~~l~~ll~~ 579 (976)
..|.+|..+..++|+.+.-+....+. ..+..+=..|...++. |+ |-..--.|+..++..-+ ..+.|=+..++-.
T Consensus 810 nksa~vRqqaadlis~la~Vlktc~ee-~~m~~lGvvLyEylgeeypE-vLgsILgAikaI~nvigm~km~pPi~dllPr 887 (1172)
T KOG0213|consen 810 NKSAKVRQQAADLISSLAKVLKTCGEE-KLMGHLGVVLYEYLGEEYPE-VLGSILGAIKAIVNVIGMTKMTPPIKDLLPR 887 (1172)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhccHH-HHHHHhhHHHHHhcCcccHH-HHHHHHHHHHHHHHhccccccCCChhhhccc
Confidence 26899999999999999988875431 2333333445555654 45 66666777777776543 2345555555555
Q ss_pred HHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCC----hHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHH
Q 002041 580 YRTAVNGEGSLKVSAEDSLHLVEALSMVITELP----QVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHID 655 (976)
Q Consensus 580 ~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p----~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 655 (976)
+..++.+ -..+.+..-+.-+|.|...-| .-+... ++--+++-|...-.. ..|. +.+
T Consensus 888 ltPILkn-----rheKVqen~IdLvg~IadrgpE~v~aREWMR----IcfeLlelLkahkK~--------iRRa---a~n 947 (1172)
T KOG0213|consen 888 LTPILKN-----RHEKVQENCIDLVGTIADRGPEYVSAREWMR----ICFELLELLKAHKKE--------IRRA---AVN 947 (1172)
T ss_pred chHhhhh-----hHHHHHHHHHHHHHHHHhcCcccCCHHHHHH----HHHHHHHHHHHHHHH--------HHHH---HHh
Confidence 5555543 123345555555666655533 223332 232232222221100 0011 122
Q ss_pred HHHHHhhhcCCcccHHH----------------------H---HHHHhHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHh
Q 002041 656 RFAYIFRYVNHPEAVAD----------------------A---IQRLWPIFKAIFDIRAW-DMRTMESLCRACKYAVRTS 709 (976)
Q Consensus 656 ~l~~~~~~~~~~~~~~~----------------------~---~~~~~~~l~~ll~~~~~-~~~v~e~~~~~~~~~~~~~ 709 (976)
.++.+.+.. +||.++. + .-..+.++-.++..|.. +.-|-..+.+.+.+++...
T Consensus 948 TfG~IakaI-GPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyi 1026 (1172)
T KOG0213|consen 948 TFGYIAKAI-GPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYI 1026 (1172)
T ss_pred hhhHHHHhc-CHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHH
Confidence 222222222 1222111 0 01123345555555543 2223345556666666655
Q ss_pred hhhhhhhHHHHHHHHHHHHhhcCCccHHHHHHHHHHHhCCC---CcchHHHHHHHHHHHHHHHhhhcCcccCCCCCccHH
Q 002041 710 KRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSD---PSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVAD 786 (976)
Q Consensus 710 ~~~~~~~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~~~---~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pD~~~ 786 (976)
|.....++-.+..++..+.. .+...+-.++..+|....-. -.+.+.+..+++-+.. +-++..|.++.
T Consensus 1027 gemskdYiyav~PlleDAlm-DrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWp---------NIle~sPhviq 1096 (1172)
T KOG0213|consen 1027 GEMSKDYIYAVTPLLEDALM-DRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWP---------NILETSPHVIQ 1096 (1172)
T ss_pred HHHhhhHHHHhhHHHHHhhc-cccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhh---------hhcCCChHHHH
Confidence 55555444444443333322 23333344444444422211 0133444333333221 22456677777
Q ss_pred HHHHHHHHHHhh-CCCcccCcCChHHHHHHHHHhcccCCchhHHHHHHHHHHhhc
Q 002041 787 DCFLLASRCIRY-CPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFD 840 (976)
Q Consensus 787 ~~f~l~~~~~~~-~p~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~l~~ 840 (976)
++..-+..+-.. .| ..+++++.++|..+.+.+-+.-+..+..+..
T Consensus 1097 a~~e~~eg~r~~Lg~---------~~~~~Y~~QGLFHParkVR~~yw~vyn~my~ 1142 (1172)
T KOG0213|consen 1097 AFDEAMEGLRVALGP---------QAMLKYCLQGLFHPARKVRKRYWTVYNSMYH 1142 (1172)
T ss_pred HHHHHHHHHHHHhch---------HHHHHHHHHhccCcHHHHHHHHHHHHHhHhh
Confidence 766555444331 11 3467777888877776666666666655543
No 29
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.59 E-value=0.31 Score=57.78 Aligned_cols=163 Identities=11% Similarity=0.064 Sum_probs=106.6
Q ss_pred CCcchhhHHHHHHHHhhcccCcccccchHHHhhhcc-CCC-CcHHHHHHHHHHHHhcHHHHhh-CCC----CcchHHHHH
Q 002041 465 NEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KLP-QQPQLLQTVCLTIGAYSKWFDA-ASS----DPSILASVL 537 (976)
Q Consensus 465 ~~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~-~~~-~~~~v~~t~~~~ig~y~~~~~~-~p~----~~~~l~~~l 537 (976)
.+--.+++..|..+++...-++.-.++++.+...+. ... +.+.+..-++.+.++|.+.+.. +|. ...+..+++
T Consensus 491 ss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~ 570 (1233)
T KOG1824|consen 491 SSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMY 570 (1233)
T ss_pred hHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHH
Confidence 345578999999888876655544555555544432 121 2568888888999999887753 221 113566666
Q ss_pred HHHHcccC----CChHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCCh
Q 002041 538 SILTSGMS----TSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ 613 (976)
Q Consensus 538 ~~l~~~l~----~~~~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~ 613 (976)
....+-+. +.+ |+.+|..++..++-..++.+..+++..+..+..-+++ ...|...+.|.+.|..+--.
T Consensus 571 ~~tl~rL~a~d~Dqe-VkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~n-------EiTRl~AvkAlt~Ia~S~l~ 642 (1233)
T KOG1824|consen 571 DCTLQRLKATDSDQE-VKERAISCMGQIIANFGDFLGNELPRTLPILLERLGN-------EITRLTAVKALTLIAMSPLD 642 (1233)
T ss_pred HHHHHHHhcccccHH-HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-------hhHHHHHHHHHHHHHhccce
Confidence 55544443 334 9999999999999999999998888888777665543 34688889999877666222
Q ss_pred HHHHHHHHHhhhHHHHHHHHHH
Q 002041 614 VDAKKALEMLCLPVVTPLQEII 635 (976)
Q Consensus 614 ~~~~~~l~~ll~p~~~~l~~~~ 635 (976)
-...+.+..++.-+...+.+..
T Consensus 643 i~l~~~l~~il~~l~~flrK~~ 664 (1233)
T KOG1824|consen 643 IDLSPVLTEILPELASFLRKNQ 664 (1233)
T ss_pred eehhhhHHHHHHHHHHHHHHHH
Confidence 1333555555555555555443
No 30
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.57 E-value=0.34 Score=57.65 Aligned_cols=454 Identities=14% Similarity=0.151 Sum_probs=233.5
Q ss_pred cCCCHHHHHHHHHHHHHHhcC-hhHHHHH-HHHhhc-CCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHH
Q 002041 16 HHPDDAVRMQADRWLQDFQHT-IDAWQVA-DNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLK 92 (976)
Q Consensus 16 ~~~d~~~r~~A~~~L~~~q~s-~~aw~~~-~~lL~~-~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~ 92 (976)
.++|...|+-+.-++..+... ++..-++ ..+..+ .+.++.+|-.|..++-+-. +++..+.+-..+.+.+.
T Consensus 52 ~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-------~~~~~~~l~~~v~~ll~ 124 (526)
T PF01602_consen 52 SSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-------TPEMAEPLIPDVIKLLS 124 (526)
T ss_dssp SSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--------SHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-------ccchhhHHHHHHHHHhc
Confidence 456888999999999886664 5535444 334332 2467788988888888643 45556666666666655
Q ss_pred HhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC-CCcHHHHHHHHhhcccccccccccCChhHHHHHH
Q 002041 93 KFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH-PEFVPGFLELLTVLPEEVFNYKIAARPERRRQFE 171 (976)
Q Consensus 93 ~~~~~~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l~~~-~~~~~~~L~~L~~l~EE~~~~~~~~~~~~r~~l~ 171 (976)
+ ..+.||++-+.++..++...+. .-+.. +++.+.+.+... +......+.++..+ ... .+ .
T Consensus 125 ~---~~~~VRk~A~~~l~~i~~~~p~-~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~--------~~-~--- 185 (526)
T PF01602_consen 125 D---PSPYVRKKAALALLKIYRKDPD-LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI--KCN--------DD-S--- 185 (526)
T ss_dssp S---SSHHHHHHHHHHHHHHHHHCHC-CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH--HCT--------HH-H---
T ss_pred C---CchHHHHHHHHHHHHHhccCHH-HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH--ccC--------cc-h---
Confidence 4 6779999999999998876432 22221 355566666422 22334455555554 000 00 0
Q ss_pred HHHHHhHHHHHHHHHHhhhh--hHHHHHHHHHHHHhhhccCCCCCccccc--chhHHHHHhcCCC--cchHHHHHHHHHH
Q 002041 172 KELTSQMEVALSTLTACLHI--NELKEQVLEAFASWLRLKHRIPGSVLAS--HPLVLTALSSLHS--EILSEASVNVISE 245 (976)
Q Consensus 172 ~~l~~~~~~vl~~l~~~l~~--~~~~~~~l~~~~sWi~~~~~i~~~~l~~--~~l~~~~~~~L~~--~~~~~~a~~~l~~ 245 (976)
.....+.+...+.+.+.. +-....+++++..+.... .-.. ..+++.+.+.+++ +.+.-.|+.++..
T Consensus 186 --~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~------~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~ 257 (526)
T PF01602_consen 186 --YKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPME------PEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIK 257 (526)
T ss_dssp --HTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSS------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCC------hhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 001223333333333232 234556666666544421 1111 2455555555542 2233333333332
Q ss_pred HhhhhccCCCCCccCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHHHHhcCCchhHHHHHHHHhhc
Q 002041 246 LIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVA 325 (976)
Q Consensus 246 ii~~~~~~~~~~~~~~~~~i~~l~~~v~~l~~~~~~~~~d~e~~~~~~~l~~~~~~~~~~~l~~~~~~~~~ll~~lL~~~ 325 (976)
+.. ..++++.+++.+..+ + . +.|.+..-...+.+..++..+...+. .....+.+.
T Consensus 258 l~~------------~~~~~~~~~~~L~~l---L-~-s~~~nvr~~~L~~L~~l~~~~~~~v~--------~~~~~~~~l 312 (526)
T PF01602_consen 258 LSP------------SPELLQKAINPLIKL---L-S-SSDPNVRYIALDSLSQLAQSNPPAVF--------NQSLILFFL 312 (526)
T ss_dssp HSS------------SHHHHHHHHHHHHHH---H-T-SSSHHHHHHHHHHHHHHCCHCHHHHG--------THHHHHHHH
T ss_pred hhc------------chHHHHhhHHHHHHH---h-h-cccchhehhHHHHHHHhhcccchhhh--------hhhhhhhee
Confidence 221 122344444433222 2 2 33443332334445555554433331 112222333
Q ss_pred c-CCCcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCCChhhhHH
Q 002041 326 S-HPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKE 404 (976)
Q Consensus 326 ~-~~~~~vs~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~d~~~~~~d~~~~ 404 (976)
. .++..+...+++--+.+.+.- -...++.+|. ..+ .+ .++
T Consensus 313 ~~~~d~~Ir~~~l~lL~~l~~~~------------------------n~~~Il~eL~----~~l---~~---~~d----- 353 (526)
T PF01602_consen 313 LYDDDPSIRKKALDLLYKLANES------------------------NVKEILDELL----KYL---SE---LSD----- 353 (526)
T ss_dssp HCSSSHHHHHHHHHHHHHH--HH------------------------HHHHHHHHHH----HHH---HH---C-------
T ss_pred cCCCChhHHHHHHHHHhhccccc------------------------chhhHHHHHH----HHH---Hh---ccc-----
Confidence 3 566777778877654444311 1122333333 222 00 000
Q ss_pred hHhhhhcccccCCccchhhhhhhhhhhHHHHHHhhcCh--hHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhc
Q 002041 405 FKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGG--DATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAIST 482 (976)
Q Consensus 405 f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~--~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e 482 (976)
.++|.+ +...+..++....+ +++++.+.+.+.. ....-.+.+...+..+..
T Consensus 354 -~~~~~~-----------------~i~~I~~la~~~~~~~~~~v~~l~~ll~~---------~~~~~~~~~~~~i~~ll~ 406 (526)
T PF01602_consen 354 -PDFRRE-----------------LIKAIGDLAEKFPPDAEWYVDTLLKLLEI---------SGDYVSNEIINVIRDLLS 406 (526)
T ss_dssp -HHHHHH-----------------HHHHHHHHHHHHGSSHHHHHHHHHHHHHC---------TGGGCHCHHHHHHHHHHH
T ss_pred -hhhhhh-----------------HHHHHHHHHhccCchHHHHHHHHHHhhhh---------ccccccchHHHHHHHHhh
Confidence 125555 55555555543332 4566666655542 112224455556666655
Q ss_pred ccCcccccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccC-CChHHHHHHHHHHHHH
Q 002041 483 YVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMS-TSEDTAAAAALAFRHI 561 (976)
Q Consensus 483 ~~~~~~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~-~~~~v~~~A~~al~~l 561 (976)
..+......+..++..+.... ++.++..++|++|.|++.... .+ ..+.++..+...+. .+..++..+-.++.++
T Consensus 407 ~~~~~~~~~l~~L~~~l~~~~-~~~~~~~~~wilGEy~~~~~~-~~---~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl 481 (526)
T PF01602_consen 407 NNPELREKILKKLIELLEDIS-SPEALAAAIWILGEYGELIEN-TE---SAPDILRSLIENFIEESPEVKLQILTALAKL 481 (526)
T ss_dssp HSTTTHHHHHHHHHHHHTSSS-SHHHHHHHHHHHHHHCHHHTT-TT---HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred cChhhhHHHHHHHHHHHHHhh-HHHHHHHHHhhhcccCCcccc-cc---cHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 544444456777887777744 788999999999999998876 11 35556665554443 3335899999999998
Q ss_pred HHHhhh-hhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHH
Q 002041 562 CDDCRK-KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALS 605 (976)
Q Consensus 562 ~~~~~~-~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~ 605 (976)
...... ...+ .+++.+.+.... + ..+.+.|.+..+-..
T Consensus 482 ~~~~~~~~~~~---~i~~~~~~~~~~-~--s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 482 FKRNPENEVQN---EILQFLLSLATE-D--SSDPEVRDRAREYLR 520 (526)
T ss_dssp HHHSCSTTHHH---HHHHHHHCHHHH-S---SSHHHHHHHHHHHH
T ss_pred HhhCCchhhHH---HHHHHHHHHhcc-C--CCCHHHHHHHHHHHH
Confidence 866442 2222 444555444431 0 134555555555443
No 31
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=97.52 E-value=0.0039 Score=70.48 Aligned_cols=213 Identities=14% Similarity=0.200 Sum_probs=126.9
Q ss_pred hhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCccccc
Q 002041 566 RKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKK 645 (976)
Q Consensus 566 ~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~ 645 (976)
+..+.|++.++++.+..++..+ +..+-+++|+++-+++....+ ...++...+++-+.+.+..+..++.+
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~~-----~s~ENeylMk~iMRvl~~~~e-~~~p~~~~il~~L~~il~~v~kNPsn----- 85 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEKP-----GSAENEYLMKCIMRVLSVLQE-DILPIAVEILQHLTAILKEVSKNPSN----- 85 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTT------STC-HHHHHHHHHHHHHSTT-TTGGGHHHHHHHHHHHHHHHHTS--------
T ss_pred HHHhhhhHHHHHHHHHHHHhcC-----CCccchHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHhCCCC-----
Confidence 3567899999999999988753 125678999999999988753 44566667777777777777665431
Q ss_pred CcchhhhHHHHHHHHhhhcCC--cccHHHHHHHHhHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 002041 646 HPRDLTVHIDRFAYIFRYVNH--PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEE 723 (976)
Q Consensus 646 ~~~~~~~~l~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~ll~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~ 723 (976)
++--.-..+.++.+++.... |+.+..+.+.+||.+..+++. .+..|+|.+++.
T Consensus 86 -P~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~------------------------dV~EF~PYvfQI 140 (435)
T PF03378_consen 86 -PRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQ------------------------DVQEFIPYVFQI 140 (435)
T ss_dssp -HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHT------------------------T-TTTHHHHHHH
T ss_pred -cchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHH
Confidence 22222357899999998653 333556778899999888875 122344444443
Q ss_pred HHHHHhhcCCccHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhhhcCcccCCCCCccHHHHHHHHHHHHhhCCCcc
Q 002041 724 IQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLF 803 (976)
Q Consensus 724 l~~~~~~~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~ 803 (976)
+....+.++ .+...+...+++..+. . ....+.++.+.+.-+++..++++.|..+
T Consensus 141 la~Lle~~~-----------------~~~~p~~y~~L~~~Ll-------~--p~lWe~~gniPalvrLL~a~i~k~~~~i 194 (435)
T PF03378_consen 141 LAQLLELRP-----------------SSPLPDAYKQLFPPLL-------S--PALWERRGNIPALVRLLQAYIKKDPSFI 194 (435)
T ss_dssp HHHHHHHSS-------------------S--TTTGGGHHHHT-------S--GGGGGSTTTHHHHHHHHHHHHHHHGGG-
T ss_pred HHHHHHcCC-----------------CCCCcHHHHHHHHHHc-------C--cchhccCCCcCcHHHHHHHHHHhCchhh
Confidence 332222222 0111222223333222 2 2356678889999999999999999998
Q ss_pred cCcCChHHHHHHHHHhcccCCchhHHHHHHHHHHhhccc
Q 002041 804 IPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLA 842 (976)
Q Consensus 804 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~l~~~~ 842 (976)
...+.+..++...-..+.+...+ ..++..+..++...
T Consensus 195 ~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~ 231 (435)
T PF03378_consen 195 VANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENL 231 (435)
T ss_dssp ---S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS
T ss_pred cchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHC
Confidence 77777777776543333332222 35788888888654
No 32
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.0045 Score=69.91 Aligned_cols=172 Identities=19% Similarity=0.292 Sum_probs=121.4
Q ss_pred hhhHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcccccchHHHhhhccC-C-CCcH
Q 002041 429 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-L-PQQP 506 (976)
Q Consensus 429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~~-~-~~~~ 506 (976)
..+.+++|...-+...++..+...+.+ ..||...+++..++++++..+..-+..+|+++..+.+ + ..||
T Consensus 239 a~kai~~~~~~~aVK~llpsll~~l~~---------~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~ 309 (569)
T KOG1242|consen 239 AAKAIMRCLSAYAVKLLLPSLLGSLLE---------AKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKP 309 (569)
T ss_pred HHHHHHHhcCcchhhHhhhhhHHHHHH---------HhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCH
Confidence 445666666666655566555555543 3799999999999999998877666677788777763 2 3599
Q ss_pred HHHHHHHHHHHhcHHHHhh---------------CCC-C------------------cchHHHHHHHHHcccCCCh-HHH
Q 002041 507 QLLQTVCLTIGAYSKWFDA---------------ASS-D------------------PSILASVLSILTSGMSTSE-DTA 551 (976)
Q Consensus 507 ~v~~t~~~~ig~y~~~~~~---------------~p~-~------------------~~~l~~~l~~l~~~l~~~~-~v~ 551 (976)
.+|.++..++-+|++.+.. +|. . ..-+.-+++.+.+++++.. ...
T Consensus 310 evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~k 389 (569)
T KOG1242|consen 310 EVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIK 389 (569)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhh
Confidence 9999999999999987653 222 0 0112223334444544321 255
Q ss_pred HHHHHHHHHHHHHh--hhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChH
Q 002041 552 AAAALAFRHICDDC--RKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQV 614 (976)
Q Consensus 552 ~~A~~al~~l~~~~--~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~ 614 (976)
..++..+-++|... ...+.||++.++..++..+.. ..++.|.-...++|.++..+...
T Consensus 390 r~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d-----~~PEvR~vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 390 RKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDD-----AVPEVRAVAARALGALLERLGEV 449 (569)
T ss_pred hhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcC-----CChhHHHHHHHHHHHHHHHHHhh
Confidence 67778888888776 667889999999999988753 35789999999999888887643
No 33
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.05 E-value=1 Score=53.43 Aligned_cols=202 Identities=12% Similarity=0.135 Sum_probs=113.8
Q ss_pred CCcchhhHHHHHHHHhhcccCcccccchHHHhhhccCC--CCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHH-HHHHHH
Q 002041 465 NEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKL--PQQPQLLQTVCLTIGAYSKWFDAASSDPSILAS-VLSILT 541 (976)
Q Consensus 465 ~~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~~~--~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~-~l~~l~ 541 (976)
.+-.-+-.||.+++.++ . .+..+.++..+.++ ..+|.||++++..+.++... .|+ .++. +++.+.
T Consensus 91 ~n~~~~~lAL~~l~~i~---~---~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~---~p~---~~~~~~~~~l~ 158 (526)
T PF01602_consen 91 PNPYIRGLALRTLSNIR---T---PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK---DPD---LVEDELIPKLK 158 (526)
T ss_dssp SSHHHHHHHHHHHHHH----S---HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CHC---CHHGGHHHHHH
T ss_pred CCHHHHHHHHhhhhhhc---c---cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc---CHH---HHHHHHHHHHh
Confidence 33344455666666555 2 23344444433221 24789999999999887654 565 5555 566666
Q ss_pred cccCCCh-HHHHHHHHHHHHHHHHhhhhh-hcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHH
Q 002041 542 SGMSTSE-DTAAAAALAFRHICDDCRKKL-CGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKA 619 (976)
Q Consensus 542 ~~l~~~~-~v~~~A~~al~~l~~~~~~~L-~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~ 619 (976)
+.+.++. .|..+|..++..+ .+.+.. ...++.++..+.+.+.. .++..+..+++.+..+...-+.+.. .
T Consensus 159 ~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~L~~~l~~-----~~~~~q~~il~~l~~~~~~~~~~~~-~- 229 (526)
T PF01602_consen 159 QLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRILCQLLSD-----PDPWLQIKILRLLRRYAPMEPEDAD-K- 229 (526)
T ss_dssp HHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHHHHHHHTC-----CSHHHHHHHHHHHTTSTSSSHHHHH-H-
T ss_pred hhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHHhhhcccc-----cchHHHHHHHHHHHhcccCChhhhh-H-
Confidence 6666543 4888899888888 333322 25566667776666532 4567788888887755443322221 1
Q ss_pred HHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcCCHHHHHHHH
Q 002041 620 LEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLC 699 (976)
Q Consensus 620 l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~v~e~~~ 699 (976)
..++.++...++. ......++++..+...... + .....+++.+..++. ..+..+.-.++
T Consensus 230 -~~~i~~l~~~l~s--------------~~~~V~~e~~~~i~~l~~~--~--~~~~~~~~~L~~lL~--s~~~nvr~~~L 288 (526)
T PF01602_consen 230 -NRIIEPLLNLLQS--------------SSPSVVYEAIRLIIKLSPS--P--ELLQKAINPLIKLLS--SSDPNVRYIAL 288 (526)
T ss_dssp -HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHSSS--H--HHHHHHHHHHHHHHT--SSSHHHHHHHH
T ss_pred -HHHHHHHHHHhhc--------------cccHHHHHHHHHHHHhhcc--h--HHHHhhHHHHHHHhh--cccchhehhHH
Confidence 3344444443331 1122245555555543221 1 255677777777776 45566666666
Q ss_pred HHHHHHHHH
Q 002041 700 RACKYAVRT 708 (976)
Q Consensus 700 ~~~~~~~~~ 708 (976)
..+..+...
T Consensus 289 ~~L~~l~~~ 297 (526)
T PF01602_consen 289 DSLSQLAQS 297 (526)
T ss_dssp HHHHHHCCH
T ss_pred HHHHHhhcc
Confidence 666655544
No 34
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=0.62 Score=52.32 Aligned_cols=328 Identities=13% Similarity=0.120 Sum_probs=160.1
Q ss_pred hHHHHHHHHHcccCCCh-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCC-CCCHHhHHHHHHHHH----
Q 002041 532 ILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSL-KVSAEDSLHLVEALS---- 605 (976)
Q Consensus 532 ~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~-~l~~~~~~~l~eai~---- 605 (976)
|+..++.=++.+++++. +++..||.++.++++-|+....+|.+.+.+.+..+....+.. +-+.+-.-+++..|.
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESA 160 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccc
Confidence 66666666667777764 599999999999999999999999999999988876532110 001111222222221
Q ss_pred -------------------------------HHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHH
Q 002041 606 -------------------------------MVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHI 654 (976)
Q Consensus 606 -------------------------------~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l 654 (976)
+++.+.|+-++..|+..++..+++ .+..... ..+.+ .=
T Consensus 161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~----~LsD~s~-----eVr~~--~~ 229 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFN----MLSDSSD-----EVRTL--TD 229 (675)
T ss_pred cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHH----HhcCCcH-----HHHHH--HH
Confidence 122222332333333332222221 1111100 00111 01
Q ss_pred HHHHHHhhhcCC-cccHHHHHHHHhHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcC
Q 002041 655 DRFAYIFRYVNH-PEAVADAIQRLWPIFKAIFDIR-AWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQ 732 (976)
Q Consensus 655 ~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~ll~~~-~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 732 (976)
.+++.+....+. |..+ + +.+..++ +.... ..++.+...+...+...+...|..+.++++.++..+......++
T Consensus 230 t~l~~fL~eI~s~P~s~-d-~~~~i~v---lv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e 304 (675)
T KOG0212|consen 230 TLLSEFLAEIRSSPSSM-D-YDDMINV---LVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTE 304 (675)
T ss_pred HHHHHHHHHHhcCcccc-C-cccchhh---ccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCc
Confidence 122222222211 1100 0 0011111 11111 23445555565566666666788888888877766554443332
Q ss_pred Cc-c-HHH-HHH-HHHHHhCCCCcchHHHHHHHHHHHHHHHhhhcCcccCCCCCccHHHHHHHHHHHHhhCCCcccCcCC
Q 002041 733 QP-C-FLY-LSS-EVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSV 808 (976)
Q Consensus 733 ~~-~-~L~-l~~-~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~~~~ 808 (976)
.. . ... ... .+...++.... .+.++ +..++......+ ..+.-|..-+.++-+..+..+.|+.++- .
T Consensus 305 ~~~i~~~a~~~n~~l~~l~s~~~~-~~~id--~~~ii~vl~~~l-----~~~~~~tri~~L~Wi~~l~~~~p~ql~~--h 374 (675)
T KOG0212|consen 305 EMSIKEYAQMVNGLLLKLVSSERL-KEEID--YGSIIEVLTKYL-----SDDREETRIAVLNWIILLYHKAPGQLLV--H 374 (675)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhh-ccccc--hHHHHHHHHHHh-----hcchHHHHHHHHHHHHHHHhhCcchhhh--h
Confidence 21 1 110 001 12222221100 00011 111111111112 2455667778888888899999987764 3
Q ss_pred hHHHHHHHHHhcccCCchhHHHHHHHHHHhhcccCCCCchhhHHHHH----------HHHhhchHHHHHHHHHHcccCCC
Q 002041 809 FPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRD----------SVIIPRGASITRILIASLTGALP 878 (976)
Q Consensus 809 l~~~~~~~~~~l~~~~~~~~~~~~~fl~~l~~~~~~~~~~~~~~~~~----------~~~~~~g~~lv~~ll~~l~~~~~ 878 (976)
.+.+|...+.++.-...+.+.-++..+..+....+++ .++.... .++..+|.-|++++=.-+- |
T Consensus 375 ~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~---~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~---a 448 (675)
T KOG0212|consen 375 NDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSP---NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLN---A 448 (675)
T ss_pred ccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccc---cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhC---H
Confidence 4566666666677777777777777777776544332 2222222 2345778888776543332 2
Q ss_pred CCCcccHHHHHHH
Q 002041 879 SSRLETVTYALLA 891 (976)
Q Consensus 879 ~~~~~~~~~~L~~ 891 (976)
...-..++++|-.
T Consensus 449 E~IYr~~a~ILe~ 461 (675)
T KOG0212|consen 449 ERIYRSIADILER 461 (675)
T ss_pred HHHHHHHHHHHhc
Confidence 2333445554444
No 35
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.83 E-value=2.4 Score=53.37 Aligned_cols=98 Identities=15% Similarity=0.226 Sum_probs=73.8
Q ss_pred CCCCcchhhHHHHHHHHhhcccCcccccchHHHhhhccCC--CCcHHHHHHHHHHHHhcHHHHhhCCCC--cchHHHHHH
Q 002041 463 KHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKL--PQQPQLLQTVCLTIGAYSKWFDAASSD--PSILASVLS 538 (976)
Q Consensus 463 ~~~~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~~~--~~~~~v~~t~~~~ig~y~~~~~~~p~~--~~~l~~~l~ 538 (976)
.+..|...-.+-|.+++|++...+...++++++++.|-+. .+++.|+.+-..+-+.. -.++.. ..|+..++.
T Consensus 967 h~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~L----i~D~k~~vd~y~neIl~ 1042 (1702)
T KOG0915|consen 967 HNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNAL----ITDSKKVVDEYLNEILD 1042 (1702)
T ss_pred hhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHh----ccChHHHHHHHHHHHHH
Confidence 3678999999999999999988777788999999888644 34667777655443332 122211 147788888
Q ss_pred HHHcccCCCh-HHHHHHHHHHHHHHHH
Q 002041 539 ILTSGMSTSE-DTAAAAALAFRHICDD 564 (976)
Q Consensus 539 ~l~~~l~~~~-~v~~~A~~al~~l~~~ 564 (976)
=|+.++.+.+ +|+.++|.|+..+.+.
T Consensus 1043 eLL~~lt~kewRVReasclAL~dLl~g 1069 (1702)
T KOG0915|consen 1043 ELLVNLTSKEWRVREASCLALADLLQG 1069 (1702)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHcC
Confidence 8888888876 7999999999999876
No 36
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.05 E-value=5.2 Score=48.40 Aligned_cols=397 Identities=12% Similarity=0.135 Sum_probs=196.0
Q ss_pred HHHHHHHHHHHhhhccCCCCCcccccchhHHHHHhcCCCcch--HHHHHHHHHHHhhhhccCCCCCccCchhHHHHHHHH
Q 002041 194 LKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEIL--SEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQ 271 (976)
Q Consensus 194 ~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~~~~~L~~~~~--~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~ 271 (976)
++...-.|++.-|.- ..|. . ...+++.+-+.|++++. --.++-|+.++.....+..++.-..--.+++..+|.
T Consensus 105 iRvql~~~l~~Ii~~--D~p~-~--Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~ 179 (1010)
T KOG1991|consen 105 IRVQLTACLNTIIKA--DYPE-Q--WPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPD 179 (1010)
T ss_pred HHHHHHHHHHHHHhc--CCcc-c--chhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence 344444555555553 3442 1 23677777788887653 456888999998665533221111122466778888
Q ss_pred HHhhHHHhhhcc--CCHHHHHHHHHHHHHHhhHHHHHHhcCCchhHHHHHHHHhhccCC--------Cc---------ch
Q 002041 272 IMSLKAHLTDSS--KDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHP--------EY---------DI 332 (976)
Q Consensus 272 v~~l~~~~~~~~--~d~e~~~~~~~l~~~~~~~~~~~l~~~~~~~~~ll~~lL~~~~~~--------~~---------~v 332 (976)
+.++...+.... +..+..+-++++|-++...-++.-..+++.+..-+++.+.+.+.| |+ .+
T Consensus 180 il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~ 259 (1010)
T KOG1991|consen 180 ILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKC 259 (1010)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhh
Confidence 877666543221 223556778888777765544443345556777788888887754 11 12
Q ss_pred hhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHhh-HHHHHHHHHHHHhhccCCCCCCCCChhhhHHh-Hhhhh
Q 002041 333 ASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVF-RSAYESLVSLVSFRVQYPQDYQDLSLEDLKEF-KHTRY 410 (976)
Q Consensus 333 s~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Ll~~l~~k~~~p~d~~~~~~d~~~~f-~~~R~ 410 (976)
-.=++.+.+++.+..-+. .+ ..+ +.....+.| +.++..++.++++...-=.. ..|-.+...-| -.|-.
T Consensus 260 KKWa~~~L~Rlf~Ryg~~-~~-------~~~-~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~-~~yls~rvl~~~l~fl~ 329 (1010)
T KOG1991|consen 260 KKWALHILNRLFERYGSP-SL-------VVP-EYKEFAQMFLKNFAQGILEVFLKILEQWRQ-QLYLSDRVLYYLLNFLE 329 (1010)
T ss_pred HHHHHHHHHHHHHHhCCc-cc-------cch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCHHHHHHHHHHHH
Confidence 333444444444432110 00 000 011112222 22334444444332200000 12222211111 01111
Q ss_pred cccccCCccchhhhhhhhhhhHHHHHHhhcChhHHHHHHHHHHHHhHhh----cCCCCCCcc------------------
Q 002041 411 DLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVAC----CGNKHNEWR------------------ 468 (976)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~----~~~~~~~w~------------------ 468 (976)
. .+ .-.+.|..++|. ++. .+++.+.. +.++..-|+
T Consensus 330 ~----------------~V--s~~~twkll~PH--l~~---ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~ 386 (1010)
T KOG1991|consen 330 Q----------------CV--SHASTWKLLKPH--LQV---IIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGY 386 (1010)
T ss_pred H----------------hc--cHHHHHHHhhhH--HHH---HHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccC
Confidence 1 01 111233334432 111 12222110 001111122
Q ss_pred -hhhHHHHHHHHhhcccCcccccchHHHhhh----ccC---C-C--CcHHHHHHHHHHHHhcHHHHhhCCCCcchHHH-H
Q 002041 469 -PAEAALFCIRAISTYVSVVEAEVMPQVMAL----LPK---L-P--QQPQLLQTVCLTIGAYSKWFDAASSDPSILAS-V 536 (976)
Q Consensus 469 -~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~----l~~---~-~--~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~-~ 536 (976)
-.=|++.++..++..= ..+.++.++++ +.+ - + .+++-...++.++|..++.+.+...+..-+.. +
T Consensus 387 sp~~Aa~~~l~~~~~KR---~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~fl 463 (1010)
T KOG1991|consen 387 SPDTAALDFLTTLVSKR---GKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFL 463 (1010)
T ss_pred CCcHHHHHHHHHHHHhc---chhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHH
Confidence 1125555555444322 12345555544 321 1 2 26888999999999999988765322222333 3
Q ss_pred HHHHHcccCCCh-HHHHHHHHHHHHHHH-HhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChH
Q 002041 537 LSILTSGMSTSE-DTAAAAALAFRHICD-DCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQV 614 (976)
Q Consensus 537 l~~l~~~l~~~~-~v~~~A~~al~~l~~-~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~ 614 (976)
++.++..++.|- -++++||.-+.++|+ +.+.. ..+...++...+.+.+ + -.-..+....-|+-.+|++.+
T Consensus 464 v~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~--~~l~~ale~t~~~l~~--d--~~lPV~VeAalALq~fI~~~~-- 535 (1010)
T KOG1991|consen 464 VNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDP--NNLSEALELTHNCLLN--D--NELPVRVEAALALQSFISNQE-- 535 (1010)
T ss_pred HHHhhHhhcCchhHHHHHHHHHHHHHHhccCCCh--HHHHHHHHHHHHHhcc--C--CcCchhhHHHHHHHHHHhcch--
Confidence 356666667664 389999999999994 33321 1122233333333321 1 122356666777878888753
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhcCC
Q 002041 615 DAKKALEMLCLPVVTPLQEIINQGP 639 (976)
Q Consensus 615 ~~~~~l~~ll~p~~~~l~~~~~~~~ 639 (976)
....++...+.|+++.+-.+.+...
T Consensus 536 ~~~e~~~~hvp~~mq~lL~L~ne~E 560 (1010)
T KOG1991|consen 536 QADEKVSAHVPPIMQELLKLSNEVE 560 (1010)
T ss_pred hhhhhHhhhhhHHHHHHHHHHHhcc
Confidence 3447788899999999988887643
No 37
>PTZ00429 beta-adaptin; Provisional
Probab=95.97 E-value=5.9 Score=48.31 Aligned_cols=127 Identities=12% Similarity=0.091 Sum_probs=77.8
Q ss_pred cCCCHHHHHHHHHHHHHHhc-Chh-HHHHHHHHhhcC-CCchHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHH
Q 002041 16 HHPDDAVRMQADRWLQDFQH-TID-AWQVADNLLHDA-TSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLK 92 (976)
Q Consensus 16 ~~~d~~~r~~A~~~L~~~q~-s~~-aw~~~~~lL~~~-~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~ 92 (976)
.++|.+.|+-..-||..+-+ .|+ +-..+..+..+- +.++.+|=.|..++-..-. ++ +-+.++..+.
T Consensus 78 ~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~-------~~----i~e~l~~~lk 146 (746)
T PTZ00429 78 PSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV-------SS----VLEYTLEPLR 146 (746)
T ss_pred CCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc-------HH----HHHHHHHHHH
Confidence 56688888888888887665 566 555666666542 3567788888887764211 12 3333344443
Q ss_pred Hh-cCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC-CCCcHHHHHHHHhhcccc
Q 002041 93 KF-HKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS-HPEFVPGFLELLTVLPEE 154 (976)
Q Consensus 93 ~~-~~~~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l~~-~~~~~~~~L~~L~~l~EE 154 (976)
+. ...+++||++-+.+++.++...+ +.-++.++++.+.+.+.. ++......+..|..+.++
T Consensus 147 k~L~D~~pYVRKtAalai~Kly~~~p-elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 147 RAVADPDPYVRKTAAMGLGKLFHDDM-QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhhCc-ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence 32 23578999999999998876543 222222356677776653 344445566666666553
No 38
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.67 E-value=8.3 Score=47.76 Aligned_cols=184 Identities=13% Similarity=0.138 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhc----CC--ccHHHHHH--HHHHHhCCCCcchHHHHHHHHHH
Q 002041 693 RTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQH----QQ--PCFLYLSS--EVIKIFGSDPSCASYLHNLIEAL 764 (976)
Q Consensus 693 ~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~----~~--~~~L~l~~--~li~~~~~~~~~~~~l~~~~~~l 764 (976)
...-..+.+++.++..++.....+++.++.-++-..+.. +. -.+|..++ +....+|.++ ....+...+..+
T Consensus 712 ~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~lnefl~~I 790 (1176)
T KOG1248|consen 712 PAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILNEFLSII 790 (1176)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHHHHHHHH
Confidence 445567888888988887666666666555332222211 11 12466666 4555566554 122333322222
Q ss_pred HHHHHhhhcCcccCCCCCccHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHhcccCCchhHHHHHHHHHHhhcccCC
Q 002041 765 FKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKS 844 (976)
Q Consensus 765 ~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~l~~~~~~ 844 (976)
. .-+. .+.+-++..-+-.++.++.. ...++..+.+..+++.+...++...++..++|..|+..++...
T Consensus 791 s----agl~-----gd~~~~~as~Ivai~~il~e-~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~-- 858 (1176)
T KOG1248|consen 791 S----AGLV-----GDSTRVVASDIVAITHILQE-FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKF-- 858 (1176)
T ss_pred H----hhhc-----ccHHHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcC--
Confidence 1 1111 11121222212222333322 2335566788899999888899999999999999999998532
Q ss_pred CCchhhHHHHHHHHhhchHHHHHHHHHHcccCCCCCCcccHHHHHHHHHHHhhHH
Q 002041 845 CKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVR 899 (976)
Q Consensus 845 ~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~~~~~~~~~~~~L~~l~~~~~~~ 899 (976)
. ...+..+-+.|+..++. +..+..+...-.+--+|-.|.++||.+
T Consensus 859 --p-------e~~l~~~~~~LL~sll~-ls~d~k~~~r~Kvr~LlekLirkfg~~ 903 (1176)
T KOG1248|consen 859 --P-------EECLSPHLEELLPSLLA-LSHDHKIKVRKKVRLLLEKLIRKFGAE 903 (1176)
T ss_pred --C-------HHHHhhhHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHhCHH
Confidence 1 13445566667666665 445555566667778888888888754
No 39
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.56 E-value=6.7 Score=45.98 Aligned_cols=131 Identities=15% Similarity=0.220 Sum_probs=82.4
Q ss_pred CcchhhHHHHHHHHhhcccCcccccchHHHhhhcc-CCC-CcHHHHHHHHHHHHhcHHHHhhCCCC-cchH--HHHHHHH
Q 002041 466 EWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KLP-QQPQLLQTVCLTIGAYSKWFDAASSD-PSIL--ASVLSIL 540 (976)
Q Consensus 466 ~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~-~~~-~~~~v~~t~~~~ig~y~~~~~~~p~~-~~~l--~~~l~~l 540 (976)
+-.+++.++.+|..+-+...... ..+++.+.+. .+. +++.||.-++..|+++.+ +++. ...+ ..++..+
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~--l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~----~~~~~~~~~~~~~l~~~i 124 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDS--LLPQYQPFLQRGLTHPSPKVRRLALKQLGRIAR----HSEGAAQLLVDNELLPLI 124 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc----CCHHHHHHhcCccHHHHH
Confidence 45668888888888877665433 2556665553 232 378999999999999753 2210 0001 2345555
Q ss_pred HcccCCCh-HHHHHHHHHHHHHHHHhhh--hh-hcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhc
Q 002041 541 TSGMSTSE-DTAAAAALAFRHICDDCRK--KL-CGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (976)
Q Consensus 541 ~~~l~~~~-~v~~~A~~al~~l~~~~~~--~L-~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (976)
..++.+++ .|...|+.++.+++..-.. .+ .+.. +..+.+++.. -+...|.++++.++.+.+.
T Consensus 125 ~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~---~~~L~~l~~~-----~~~~vR~Rv~el~v~i~~~ 190 (503)
T PF10508_consen 125 IQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNL---LSKLKSLMSQ-----SSDIVRCRVYELLVEIASH 190 (503)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcch---HHHHHHHHhc-----cCHHHHHHHHHHHHHHHhc
Confidence 66667664 5999999999999964211 11 1222 5555555542 2456799999998877555
No 40
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.38 E-value=8.2 Score=45.84 Aligned_cols=122 Identities=8% Similarity=0.046 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHhhcccCCCCchhhHHHHHHHHh-------hchHHHHHHHHHHcccCCCCCCc--ccHHHHHHHHHHHh
Q 002041 826 EASNSILTFLSDIFDLAKSCKGEEFLSVRDSVII-------PRGASITRILIASLTGALPSSRL--ETVTYALLALTRAY 896 (976)
Q Consensus 826 ~~~~~~~~fl~~l~~~~~~~~~~~~~~~~~~~~~-------~~g~~lv~~ll~~l~~~~~~~~~--~~~~~~L~~l~~~~ 896 (976)
+-.-.+++.+..+++.+.+...+.|...+.-++. ..-+.+|+ ++.++...-|.... +.++.+|.-+.+.-
T Consensus 654 EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvr-Ll~aflk~g~~~~~~~~~l~~iLGifqkLi 732 (960)
T KOG1992|consen 654 EFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVR-LLQAFLKTGSQIVEAADKLSGILGIFQKLI 732 (960)
T ss_pred HHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHH-HHHHHHhcCchhhcccccchhHHHHHHHHh
Confidence 3455788888888887654334455544444443 23466777 55555444344433 44555555554433
Q ss_pred h----HHHH-HHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCCchhhhHHHHHHHH
Q 002041 897 G----VRSL-EWAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSD 949 (976)
Q Consensus 897 ~----~~~~-~wl~~~l~~~p~~~~~~~~k~~f~~~l~~~~~~~~~~~~~~~l~~F~~ 949 (976)
+ ++.. ..|.++++.+|...+.|-.|+-|..-+.+.. ++...||...+.-|..
T Consensus 733 aSka~Dh~GF~LLn~i~~~~~~~~~~py~k~i~~llf~Rlq-nskT~kf~k~~~vF~~ 789 (960)
T KOG1992|consen 733 ASKANDHHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQ-NSKTEKFVKSFIVFFS 789 (960)
T ss_pred cCcccchhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHh-ccCcHHHHHHHHHHHH
Confidence 3 3443 3445677888877778888988887777664 4556676666666653
No 41
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.31 E-value=0.058 Score=47.02 Aligned_cols=75 Identities=12% Similarity=0.139 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCCh-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhh
Q 002041 509 LQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN 585 (976)
Q Consensus 509 ~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~ 585 (976)
|+.++..+...+.-+..+.. .+++.+++-++.++++++ +|+..||.||.++++.++..+.+|++.+++.+..+..
T Consensus 3 R~ggli~Laa~ai~l~~~~~--~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDIS--KYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHHchHhHH--HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444444444443433321 478888988889998875 6999999999999999999999999999999888775
No 42
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.30 E-value=8 Score=45.20 Aligned_cols=224 Identities=14% Similarity=0.186 Sum_probs=110.4
Q ss_pred hhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC-CCCcHHHHHHHHhhccccc
Q 002041 77 SEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS-HPEFVPGFLELLTVLPEEV 155 (976)
Q Consensus 77 ~~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l~~-~~~~~~~~L~~L~~l~EE~ 155 (976)
++-..-|-+-++.+|.+ ..++||+|--..+=.++++++..-=| -++-+.+.+.. .|........+. ||=.
T Consensus 139 pdLARDLa~Dv~tLL~s---skpYvRKkAIl~lykvFLkYPeAlr~---~FprL~EkLeDpDp~V~SAAV~VI---CELA 209 (877)
T KOG1059|consen 139 PDLARDLADDVFTLLNS---SKPYVRKKAILLLYKVFLKYPEALRP---CFPRLVEKLEDPDPSVVSAAVSVI---CELA 209 (877)
T ss_pred chhhHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHhhhHhHhh---hHHHHHHhccCCCchHHHHHHHHH---HHHH
Confidence 34445566667777766 66899999888888888876542223 36777777753 232223333332 2221
Q ss_pred ccccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhccCCCCCcccccchhHHHHHhcCCCcch
Q 002041 156 FNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEIL 235 (976)
Q Consensus 156 ~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~~~~~L~~~~~ 235 (976)
... + + ..-.-+|..+.++.+.-++ =+...+++-|.+...+-+.+.. .+++-+.+.+.+-..
T Consensus 210 rKn--P---------k-nyL~LAP~ffkllttSsNN-WmLIKiiKLF~aLtplEPRLgK------KLieplt~li~sT~A 270 (877)
T KOG1059|consen 210 RKN--P---------Q-NYLQLAPLFYKLLVTSSNN-WVLIKLLKLFAALTPLEPRLGK------KLIEPITELMESTVA 270 (877)
T ss_pred hhC--C---------c-ccccccHHHHHHHhccCCC-eehHHHHHHHhhccccCchhhh------hhhhHHHHHHHhhHH
Confidence 110 0 0 0011245555555443221 1455667777766654222211 122223333322111
Q ss_pred HHHHHHHHHHHhhhhccCCCCCccCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHH-HHHHHhhHHHHHHhcCCchh
Q 002041 236 SEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIAR-LFADMGDSYVELIATGSDES 314 (976)
Q Consensus 236 ~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~v~~l~~~~~~~~~d~e~~~~~~~-l~~~~~~~~~~~l~~~~~~~ 314 (976)
-.--.+|+..++.-++.. ...+|...++..+..+ ..-+.. .|. ..+.++- .+.-++- ++|.-+
T Consensus 271 mSLlYECvNTVVa~s~s~---g~~d~~asiqLCvqKL---r~fied--sDq-NLKYlgLlam~KI~k-------tHp~~V 334 (877)
T KOG1059|consen 271 MSLLYECVNTVVAVSMSS---GMSDHSASIQLCVQKL---RIFIED--SDQ-NLKYLGLLAMSKILK-------THPKAV 334 (877)
T ss_pred HHHHHHHHHHheeehhcc---CCCCcHHHHHHHHHHH---hhhhhc--CCc-cHHHHHHHHHHHHhh-------hCHHHH
Confidence 111234444555433321 1225556665544432 111211 222 2222222 1222222 344445
Q ss_pred HHHHHHHHhhccCCCcchhhhhHHHHHHHH
Q 002041 315 MLIVHALLEVASHPEYDIASMTFNFWHSLQ 344 (976)
Q Consensus 315 ~~ll~~lL~~~~~~~~~vs~~~l~fW~~l~ 344 (976)
+..-+++++|+...|..|...+++..+.+.
T Consensus 335 qa~kdlIlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 335 QAHKDLILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred HHhHHHHHHHhccCCchhHHHHHHHHHHHh
Confidence 667789999999999999999999765544
No 43
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=94.76 E-value=23 Score=47.76 Aligned_cols=388 Identities=12% Similarity=0.075 Sum_probs=198.2
Q ss_pred CcchhhHHHHHHHHhhcccCcc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCC---CcchHHHHH
Q 002041 466 EWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASS---DPSILASVL 537 (976)
Q Consensus 466 ~w~~~Ea~L~~l~~i~e~~~~~-----~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~---~~~~l~~~l 537 (976)
+-...+.+++.++.++..-+.. +...+|.+++.|.. .++.++..++++++..+..-..... ....+++++
T Consensus 459 s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s--~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV 536 (2102)
T PLN03200 459 SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET--GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALL 536 (2102)
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHH
Confidence 3455688899999988654332 23567888887752 2679999999999988752111000 001456666
Q ss_pred HHHHcccCCChHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHH
Q 002041 538 SILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAK 617 (976)
Q Consensus 538 ~~l~~~l~~~~~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~ 617 (976)
..+-.+ +++ .+..|+.++.+++..-..... .+++ .++.. -+...+..+++++|.+++....++..
T Consensus 537 ~LL~sg--d~~-~q~~Aa~AL~nLi~~~d~~~I---~~Lv----~LLls-----dd~~~~~~aL~vLgnIlsl~~~~d~~ 601 (2102)
T PLN03200 537 WLLKNG--GPK-GQEIAAKTLTKLVRTADAATI---SQLT----ALLLG-----DLPESKVHVLDVLGHVLSVASLEDLV 601 (2102)
T ss_pred HHHhCC--CHH-HHHHHHHHHHHHHhccchhHH---HHHH----HHhcC-----CChhHHHHHHHHHHHHHhhcchhHHH
Confidence 665443 334 899999999999865332211 2222 33332 23567778899999998876554322
Q ss_pred HHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcCCHHHHHH
Q 002041 618 KALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMES 697 (976)
Q Consensus 618 ~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~v~e~ 697 (976)
.-.. ....-+..+.+++.... .+....+...|+.++.+-.. ..-.-+....+|-+-.++.. ++.++...
T Consensus 602 ~~g~-~~~ggL~~Lv~LL~sgs-------~~ikk~Aa~iLsnL~a~~~d-~~~avv~agaIpPLV~LLss--~~~~v~ke 670 (2102)
T PLN03200 602 REGS-AANDALRTLIQLLSSSK-------EETQEKAASVLADIFSSRQD-LCESLATDEIINPCIKLLTN--NTEAVATQ 670 (2102)
T ss_pred HHhh-hccccHHHHHHHHcCCC-------HHHHHHHHHHHHHHhcCChH-HHHHHHHcCCHHHHHHHHhc--CChHHHHH
Confidence 1110 01223444555555432 12223355666777663211 11112224455555555543 55667777
Q ss_pred HHHHHHHHHHHhhh----h-h-hhhHHHHHHHHHHHHhhcCCccHH-HHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHh
Q 002041 698 LCRACKYAVRTSKR----F-M-GITIGAILEEIQGLYQQHQQPCFL-YLSSEVIKIFGSDPSCASYLHNLIEALFKRTTC 770 (976)
Q Consensus 698 ~~~~~~~~~~~~~~----~-~-~~~l~~l~~~l~~~~~~~~~~~~L-~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~ 770 (976)
++.++....+.... . + ...+|++++.+.. ...... ..+..+...+... +....+.+ ...+.....
T Consensus 671 AA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~-----~d~~v~e~Al~ALanLl~~~-e~~~ei~~--~~~I~~Lv~ 742 (2102)
T PLN03200 671 SARALAALSRSIKENRKVSYAAEDAIKPLIKLAKS-----SSIEVAEQAVCALANLLSDP-EVAAEALA--EDIILPLTR 742 (2102)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhC-----CChHHHHHHHHHHHHHHcCc-hHHHHHHh--cCcHHHHHH
Confidence 88887776653211 1 1 1346777776532 111211 1222222222222 11111110 111222233
Q ss_pred hhcCcccCCCCCccHHHHHHHHHHHHhhCCCc-ccC-----cCChHHHHHHHHHhcccCCchhHHH--HHHHHHHhhccc
Q 002041 771 LLTSIEEFTSRPDVADDCFLLASRCIRYCPQL-FIP-----SSVFPSLVDCSMIGITVQHREASNS--ILTFLSDIFDLA 842 (976)
Q Consensus 771 ~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~-~~~-----~~~l~~~~~~~~~~l~~~~~~~~~~--~~~fl~~l~~~~ 842 (976)
++. ..+|+..+.--.-+.++.+.+|.. .+. ...+..++.+ |...+.+.... ++..+..+...+
T Consensus 743 lLr-----~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~----L~~~~~~~~~~~~al~~l~~l~~~~ 813 (2102)
T PLN03200 743 VLR-----EGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDL----LNSTDLDSSATSEALEALALLARTK 813 (2102)
T ss_pred HHH-----hCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHH----HhcCCcchhhHHHHHHHHHHHHhhc
Confidence 343 345667777766677777766632 111 1223333333 44455544444 777777776542
Q ss_pred C--CCCchhhHHHHHHHHhhchHHHHHHHHHHcccCCCCCCcccHHHHHHHHHHHhhHHHHHHHH
Q 002041 843 K--SCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAK 905 (976)
Q Consensus 843 ~--~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~~~~~~~~~~~~L~~l~~~~~~~~~~wl~ 905 (976)
. +...++|...++. ......||+ ++. .-++...++..++|-++.+-.|..+...+.
T Consensus 814 ~~~~~~~~~~~~~~e~--p~~l~~l~~----~l~-~~~p~~~~kai~il~~~~~~~~~~~~~~~~ 871 (2102)
T PLN03200 814 GGANFSHPPWAVLAEV--PSSLEPLVR----CLA-EGHPLVQDKAIEILSRLCRDQPVVLGDLIA 871 (2102)
T ss_pred ccCCCCCCchhhHHhc--cCchHHHHH----HHH-cCChHHHHHHHHHHHHHhccChhHHHHHHh
Confidence 2 1123455322211 111223333 332 335577888888888888777755555443
No 44
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=94.52 E-value=1.9 Score=45.47 Aligned_cols=224 Identities=13% Similarity=0.147 Sum_probs=119.8
Q ss_pred cHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHh
Q 002041 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAV 584 (976)
Q Consensus 505 ~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~ 584 (976)
++.+|..++.+++..-+-+....=..+-...++.|+...+.+.. ....|..++..+. .++..-......+++.+.+..
T Consensus 12 d~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~-~~~~~l~gl~~L~-~~~~~~~~~~~~i~~~l~~~~ 89 (262)
T PF14500_consen 12 DPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA-CVQPALKGLLALV-KMKNFSPESAVKILRSLFQNV 89 (262)
T ss_pred CHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh-hHHHHHHHHHHHH-hCcCCChhhHHHHHHHHHHhC
Confidence 57778888777766544443221001245666778878887766 5555588888877 333322233445555554433
Q ss_pred hccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhc
Q 002041 585 NGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYV 664 (976)
Q Consensus 585 ~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 664 (976)
.. ......+|..+++-+-.++.... ..+..+-...+..+-++++... .+|.+....+.+..+.+..
T Consensus 90 ~~---q~~~q~~R~~~~~ll~~l~~~~~-----~~l~~~~~~fv~~~i~~~~gEk------DPRnLl~~F~l~~~i~~~~ 155 (262)
T PF14500_consen 90 DV---QSLPQSTRYAVYQLLDSLLENHR-----EALQSMGDDFVYGFIQLIDGEK------DPRNLLLSFKLLKVILQEF 155 (262)
T ss_pred Ch---hhhhHHHHHHHHHHHHHHHHHhH-----HHHHhchhHHHHHHHHHhccCC------CHHHHHHHHHHHHHHHHhc
Confidence 22 23567889999988888877632 2223334445555555555332 4566665666666665554
Q ss_pred CCcccHHHHHHHHhHHHHHH----HHhhcCCH--HHHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHHHHHhhcCCccHH
Q 002041 665 NHPEAVADAIQRLWPIFKAI----FDIRAWDM--RTMESLCRACKYAVRTSKRFMGI-TIGAILEEIQGLYQQHQQPCFL 737 (976)
Q Consensus 665 ~~~~~~~~~~~~~~~~l~~l----l~~~~~~~--~v~e~~~~~~~~~~~~~~~~~~~-~l~~l~~~l~~~~~~~~~~~~L 737 (976)
..+ +..++++.++..- +..-++|+ -..|..-..++.++.+ .+.+.| .+|-+++.+.+.... --...|
T Consensus 156 ~~~----~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s-~~~fa~~~~p~LleKL~s~~~~-~K~D~L 229 (262)
T PF14500_consen 156 DIS----EFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSS-TPLFAPFAFPLLLEKLDSTSPS-VKLDSL 229 (262)
T ss_pred ccc----hhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcC-cHhhHHHHHHHHHHHHcCCCcH-HHHHHH
Confidence 321 2223333322221 12223343 1244555555555554 233333 356677766543322 113457
Q ss_pred HHHHHHHHHhCCC
Q 002041 738 YLSSEVIKIFGSD 750 (976)
Q Consensus 738 ~l~~~li~~~~~~ 750 (976)
.++..++..||..
T Consensus 230 ~tL~~c~~~y~~~ 242 (262)
T PF14500_consen 230 QTLKACIENYGAD 242 (262)
T ss_pred HHHHHHHHHCCHH
Confidence 7888888888854
No 45
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=94.29 E-value=0.53 Score=41.78 Aligned_cols=92 Identities=11% Similarity=0.153 Sum_probs=73.6
Q ss_pred HHHHHHHHHcccCCCh-----HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHH
Q 002041 533 LASVLSILTSGMSTSE-----DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 607 (976)
Q Consensus 533 l~~~l~~l~~~l~~~~-----~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~v 607 (976)
+-.+++.+...+++++ .-+.++-+|+..+.+-++.++.++.++++..++..+.. ++-+...+++-..+
T Consensus 9 ~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~-------~eL~~~al~~W~~~ 81 (107)
T smart00802 9 FLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI-------PELRSLALRCWHVL 81 (107)
T ss_pred HHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-------hhHHHHHHHHHHHH
Confidence 4556666666666543 24889999999999999999999999999999988753 34678889999999
Q ss_pred HhcCChHHHHHHHHHhhhHHHHHH
Q 002041 608 ITELPQVDAKKALEMLCLPVVTPL 631 (976)
Q Consensus 608 i~~~p~~~~~~~l~~ll~p~~~~l 631 (976)
+..+++++..+.+++.+.-+++.|
T Consensus 82 i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 82 IKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHhc
Confidence 999999888888887777766554
No 46
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.07 E-value=17 Score=43.28 Aligned_cols=61 Identities=21% Similarity=0.206 Sum_probs=36.6
Q ss_pred cHHHHHHHHHHHHhcHHHHhhC-----CCC--cchHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHh
Q 002041 505 QPQLLQTVCLTIGAYSKWFDAA-----SSD--PSILASVLSILTSGMSTSEDTAAAAALAFRHICDDC 565 (976)
Q Consensus 505 ~~~v~~t~~~~ig~y~~~~~~~-----p~~--~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~ 565 (976)
.+.+.+-+.|+||.|..++... |.. ...+-.++.-++..-.....+...|-.|+.|+....
T Consensus 479 ~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~ 546 (866)
T KOG1062|consen 479 QEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRF 546 (866)
T ss_pred hhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhc
Confidence 5667889999999999988763 110 112223332222222222347888888888887653
No 47
>PTZ00429 beta-adaptin; Provisional
Probab=93.76 E-value=22 Score=43.53 Aligned_cols=90 Identities=12% Similarity=0.111 Sum_probs=54.7
Q ss_pred CcHHHHHHHHHHHHhcHHHHhhCCCC---cchHHHHHHHHHcccCCCh-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHH
Q 002041 504 QQPQLLQTVCLTIGAYSKWFDAASSD---PSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNV 579 (976)
Q Consensus 504 ~~~~v~~t~~~~ig~y~~~~~~~p~~---~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~ 579 (976)
.+|.||++++..+.+... .+|+. ..+++.+.. .+.++. .|...|..+|..+++.+...+......+...
T Consensus 152 ~~pYVRKtAalai~Kly~---~~pelv~~~~~~~~L~~----LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~L 224 (746)
T PTZ00429 152 PDPYVRKTAAMGLGKLFH---DDMQLFYQQDFKKDLVE----LLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRL 224 (746)
T ss_pred CCHHHHHHHHHHHHHHHh---hCcccccccchHHHHHH----HhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHH
Confidence 489999999999998643 34431 023444333 344432 3999999999999987755432222222222
Q ss_pred HHHHhhccCCCCCCHHhHHHHHHHHHH
Q 002041 580 YRTAVNGEGSLKVSAEDSLHLVEALSM 606 (976)
Q Consensus 580 ~~~~~~~~~~~~l~~~~~~~l~eai~~ 606 (976)
+ ..+. ..+.-.+..+++.++.
T Consensus 225 l-~~L~-----e~~EW~Qi~IL~lL~~ 245 (746)
T PTZ00429 225 V-YHLP-----ECNEWGQLYILELLAA 245 (746)
T ss_pred H-HHhh-----cCChHHHHHHHHHHHh
Confidence 2 2222 2567788899998854
No 48
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.62 E-value=16 Score=41.59 Aligned_cols=338 Identities=14% Similarity=0.116 Sum_probs=161.1
Q ss_pred HHcccCCCh-HHHHHHHHHHHHHHHHhhhh-hhcCHHHHHH-HHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHH
Q 002041 540 LTSGMSTSE-DTAAAAALAFRHICDDCRKK-LCGYLDGLYN-VYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDA 616 (976)
Q Consensus 540 l~~~l~~~~-~v~~~A~~al~~l~~~~~~~-L~~~l~~ll~-~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~ 616 (976)
+.+|+++.- +=+.+|+.-+.+++++|-.. =...+..+++ .+.....++ ...-+..-+=|++.+.-+++.+..
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~-----~~n~rkGgLiGlAA~~iaLg~~~~ 79 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSP-----HANMRKGGLIGLAAVAIALGIKDA 79 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCc-----ccccccchHHHHHHHHHHhccccH
Confidence 456666652 24778888899998876431 1123333443 222222221 111122344477777777777766
Q ss_pred HHHHHHhhhHHHHHHHHHHhcCCCcccccCcchh-hhHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcCCH-HH
Q 002041 617 KKALEMLCLPVVTPLQEIINQGPEILQKKHPRDL-TVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDM-RT 694 (976)
Q Consensus 617 ~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~-~v 694 (976)
. |++.++.|++..+ +..+ .+.+-+ +..+..++.+.++ .+..+++.++-++-++...-..+. .-
T Consensus 80 ~-Y~~~iv~Pv~~cf----~D~d-----~~vRyyACEsLYNiaKv~k~-----~v~~~Fn~iFdvL~klsaDsd~~V~~~ 144 (675)
T KOG0212|consen 80 G-YLEKIVPPVLNCF----SDQD-----SQVRYYACESLYNIAKVAKG-----EVLVYFNEIFDVLCKLSADSDQNVRGG 144 (675)
T ss_pred H-HHHHhhHHHHHhc----cCcc-----ceeeeHhHHHHHHHHHHhcc-----CcccchHHHHHHHHHHhcCCccccccH
Confidence 6 9999999987654 2211 123322 3456666666653 234455666666655554321111 12
Q ss_pred HHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHH-HhhcCCccHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhhh
Q 002041 695 MESLCRACKYAVRTSK-RFMGITIGAILEEIQGL-YQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLL 772 (976)
Q Consensus 695 ~e~~~~~~~~~~~~~~-~~~~~~l~~l~~~l~~~-~~~~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l 772 (976)
.|-.-+.++.++..-. .+. ++.+++.+... |...+. .=..+++++-......+ .+.+ +-+..++...+.+|
T Consensus 145 aeLLdRLikdIVte~~~tFs---L~~~ipLL~eriy~~n~~-tR~flv~Wl~~Lds~P~--~~m~-~yl~~~ldGLf~~L 217 (675)
T KOG0212|consen 145 AELLDRLIKDIVTESASTFS---LPEFIPLLRERIYVINPM-TRQFLVSWLYVLDSVPD--LEMI-SYLPSLLDGLFNML 217 (675)
T ss_pred HHHHHHHHHHhccccccccC---HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHhcCCc--HHHH-hcchHHHHHHHHHh
Confidence 2334455555554322 221 23333333332 222221 11334455444433321 1111 22333444455555
Q ss_pred cCcccCCCCCccHHHHHHHHHHHH---hhCCCcccCcCChHHHHHHHHHhcccCCchhHHHHHHHHHHhhcccCCCCchh
Q 002041 773 TSIEEFTSRPDVADDCFLLASRCI---RYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEE 849 (976)
Q Consensus 773 ~~~~~~~~~pD~~~~~f~l~~~~~---~~~p~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~l~~~~~~~~~~~ 849 (976)
. ++++|++.-.=..+..++ +..|..+ -.+.+++..+.-++.++++....++.++..++..++..--.-
T Consensus 218 s-----D~s~eVr~~~~t~l~~fL~eI~s~P~s~----d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~ 288 (675)
T KOG0212|consen 218 S-----DSSDEVRTLTDTLLSEFLAEIRSSPSSM----DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLY 288 (675)
T ss_pred c-----CCcHHHHHHHHHHHHHHHHHHhcCcccc----CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhh
Confidence 4 556666533333334443 3455543 133445555555778888888888888888886442100000
Q ss_pred hHHHHHHHHh----------hchHHHHHHHHHHcccC-CCC--CCcccHHHHHHHHHHHhhHH----HHHHHHHHHhhCC
Q 002041 850 FLSVRDSVII----------PRGASITRILIASLTGA-LPS--SRLETVTYALLALTRAYGVR----SLEWAKESVSLIP 912 (976)
Q Consensus 850 ~~~~~~~~~~----------~~g~~lv~~ll~~l~~~-~~~--~~~~~~~~~L~~l~~~~~~~----~~~wl~~~l~~~p 912 (976)
...+...++. ..-...++..+..+++. .-. -....+.+++.........+ .-+|+.......|
T Consensus 289 ~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p 368 (675)
T KOG0212|consen 289 LSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAP 368 (675)
T ss_pred hhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCc
Confidence 0011111110 01122333344444322 111 12335667777766555444 3478887776667
Q ss_pred C
Q 002041 913 L 913 (976)
Q Consensus 913 ~ 913 (976)
.
T Consensus 369 ~ 369 (675)
T KOG0212|consen 369 G 369 (675)
T ss_pred c
Confidence 5
No 49
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.29 E-value=3 Score=47.32 Aligned_cols=280 Identities=19% Similarity=0.171 Sum_probs=128.8
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHH--HHHHhhhhhhhhHHHHHHHHHHHHhhcCCccHHHHHHHHHHHhCCCCcchH
Q 002041 678 WPIFKAIFDIRAWDMRTMESLCRACKY--AVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCAS 755 (976)
Q Consensus 678 ~~~l~~ll~~~~~~~~v~e~~~~~~~~--~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~~~~~~~~ 755 (976)
.|.+..+++..+.+.+-++..+++-|+ ....++... +.++..+....++...++ =..++.++..||+...+..
T Consensus 114 ~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~~----~~~L~~l~~lLe~~~l~~-~~~l~~Vl~~l~SWl~~~~ 188 (559)
T KOG2081|consen 114 VPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQV----SKVLVFLSDLLERSDLKS-SDDLEQVLRCLGSWLRLHV 188 (559)
T ss_pred HHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHhH----HHHHHHHHHHHhhcCCCh-hhHHHHHHHHHhhhhhhcc
Confidence 456667777777654433433444442 223334443 344444445555544443 3445778888887755333
Q ss_pred HHHHHHH---HHHHHHHhhhcCcccCCCCCccHHHHHHHHHHHHh------hCCCcccCcCChHHHHHHHHHhcccCCch
Q 002041 756 YLHNLIE---ALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIR------YCPQLFIPSSVFPSLVDCSMIGITVQHRE 826 (976)
Q Consensus 756 ~l~~~~~---~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~------~~p~~~~~~~~l~~~~~~~~~~l~~~~~~ 826 (976)
...+.+. ++++.+|..+.. ..-+-+.++....+...+.. .++..+..+..++..++++..+-+ .+
T Consensus 189 ~~~d~v~a~~pLi~l~F~sl~~---~~lhe~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d---~d 262 (559)
T KOG2081|consen 189 FPPDQVLASFPLITLAFRSLSD---DELHEEATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGED---LD 262 (559)
T ss_pred CCHHHHHhhhHHHHHHHHHccc---chhhHHHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccC---HH
Confidence 3222222 344445554441 11122234444444444442 233445566788899998766544 44
Q ss_pred hHHHHHHHHHHhhc---ccCCCCchhhHHHHHHHHhhchHHHHHHHHHHccc--CCCCCCcccHHHHHHHHHHHhhHHHH
Q 002041 827 ASNSILTFLSDIFD---LAKSCKGEEFLSVRDSVIIPRGASITRILIASLTG--ALPSSRLETVTYALLALTRAYGVRSL 901 (976)
Q Consensus 827 ~~~~~~~fl~~l~~---~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~--~~~~~~~~~~~~~L~~l~~~~~~~~~ 901 (976)
-..+.+..++.+.+ .-...+...+...+.-++...|..-...+-..+.+ ...+...-.-.+..+.+++-|...+-
T Consensus 263 ~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLv 342 (559)
T KOG2081|consen 263 KNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLV 342 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHH
Confidence 55556666655544 11111112333344444444443333322222211 22222222333444445555555566
Q ss_pred HHHHHHHhhCCC--CCCCHHHHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHHhhhh---HHHHHHhccCCCC
Q 002041 902 EWAKESVSLIPL--TALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRNRT---VQEIVQGALKPLE 969 (976)
Q Consensus 902 ~wl~~~l~~~p~--~~~~~~~k~~f~~~l~~~~~~~~~~~~~~~l~~F~~~cr~~~~---~~~~~~~~~~~~~ 969 (976)
.|+..-+ .+|. ..++++..+.|-..+....-.+|.-..-.....|...|++.++ ....+.-||+|.+
T Consensus 343 s~l~~h~-qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e~~~~We~~EAaLF~l~ 414 (559)
T KOG2081|consen 343 SLLKRHV-QLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKENNASWEEVEAALFILR 414 (559)
T ss_pred HHHHHHc-cCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 6665544 3444 2345555544433322211112222222223455667777766 4444545555443
No 50
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=92.92 E-value=0.22 Score=43.41 Aligned_cols=89 Identities=10% Similarity=0.125 Sum_probs=65.3
Q ss_pred hhHHHHHHHHhhcccCcccccchHHHhhhcc-CCC-CcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCC
Q 002041 470 AEAALFCIRAISTYVSVVEAEVMPQVMALLP-KLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS 547 (976)
Q Consensus 470 ~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~-~~~-~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~ 547 (976)
+-++|.++.+++.++...-.++++.|++.+. .+. ++++||+.+|+.+...++..... ...++..++..+.+.+.++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~--~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE--ILPYFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCC
Confidence 4588999999999988877778888888654 444 58999999999999998876542 1125677888888888877
Q ss_pred h-HHHHHHHHHHHHH
Q 002041 548 E-DTAAAAALAFRHI 561 (976)
Q Consensus 548 ~-~v~~~A~~al~~l 561 (976)
+ .|+..| ..+-++
T Consensus 81 d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 81 DENVRSAA-ELLDRL 94 (97)
T ss_pred chhHHHHH-HHHHHH
Confidence 5 355555 444443
No 51
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=92.89 E-value=24 Score=41.44 Aligned_cols=338 Identities=17% Similarity=0.147 Sum_probs=166.3
Q ss_pred hhhHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCc-----ccccchHHHhhhccCCC
Q 002041 429 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSV-----VEAEVMPQVMALLPKLP 503 (976)
Q Consensus 429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~-----~~~~~l~~l~~~l~~~~ 503 (976)
+.++|..+..-..++...+...+.+...+. ..+-.-++.++..++.+++.-.. .+++.++.++..+..
T Consensus 58 ~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~-----h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~-- 130 (503)
T PF10508_consen 58 ICDILKRLLSALSPDSLLPQYQPFLQRGLT-----HPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD-- 130 (503)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC--
Confidence 556777776666666556666666665553 23344566777777766543221 123455555555532
Q ss_pred CcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHH-----HHHHHcccCC-ChHHHHHHHHHHHHHHHHhhhhhhcCH-HHH
Q 002041 504 QQPQLLQTVCLTIGAYSKWFDAASSDPSILASV-----LSILTSGMST-SEDTAAAAALAFRHICDDCRKKLCGYL-DGL 576 (976)
Q Consensus 504 ~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~-----l~~l~~~l~~-~~~v~~~A~~al~~l~~~~~~~L~~~l-~~l 576 (976)
.+..|...++.++.+.+. ++. .+..+ +..+.+.+.. ...++.++...+.+++......+.-.. ..+
T Consensus 131 ~d~~Va~~A~~~L~~l~~----~~~---~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgl 203 (503)
T PF10508_consen 131 PDLSVAKAAIKALKKLAS----HPE---GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGL 203 (503)
T ss_pred CcHHHHHHHHHHHHHHhC----Cch---hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccH
Confidence 256788888888887764 332 22222 4444454555 334788888888888765443332111 124
Q ss_pred HHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcch--hhhHH
Q 002041 577 YNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRD--LTVHI 654 (976)
Q Consensus 577 l~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~--~~~~l 654 (976)
++.+...+.+ -+.-.+..++|-++.+... ..-..|+.+ ..++..+-+.+.....++ .... +-..+
T Consensus 204 l~~ll~eL~~-----dDiLvqlnalell~~La~~---~~g~~yL~~--~gi~~~L~~~l~~~~~dp---~~~~~~l~g~~ 270 (503)
T PF10508_consen 204 LDLLLKELDS-----DDILVQLNALELLSELAET---PHGLQYLEQ--QGIFDKLSNLLQDSEEDP---RLSSLLLPGRM 270 (503)
T ss_pred HHHHHHHhcC-----ccHHHHHHHHHHHHHHHcC---hhHHHHHHh--CCHHHHHHHHHhccccCC---cccchhhhhHH
Confidence 4444444332 1233577888888877773 233456555 466777777776554322 0111 11222
Q ss_pred HHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHh-hhhhh-----hhHHHHHHHHHHH
Q 002041 655 DRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIR-AWDMRTMESLCRACKYAVRTS-KRFMG-----ITIGAILEEIQGL 727 (976)
Q Consensus 655 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~~~v~e~~~~~~~~~~~~~-~~~~~-----~~l~~l~~~l~~~ 727 (976)
.-.+.++.. .|..+...+..+. ..++... ..|....+.+.+.++.+-.+. |..+. +-+..++..+...
T Consensus 271 ~f~g~la~~--~~~~v~~~~p~~~---~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~ 345 (503)
T PF10508_consen 271 KFFGNLARV--SPQEVLELYPAFL---ERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDA 345 (503)
T ss_pred HHHHHHHhc--ChHHHHHHHHHHH---HHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 333333332 2322332222222 2333332 356677777777777544322 32222 1222223322222
Q ss_pred HhhcC---CccHHHHHHHHHHHhCCCCcch---HHHHHHHHHHHHHHHh-hhcCcccC-CCCCccHHHHHHHHHHHHhhC
Q 002041 728 YQQHQ---QPCFLYLSSEVIKIFGSDPSCA---SYLHNLIEALFKRTTC-LLTSIEEF-TSRPDVADDCFLLASRCIRYC 799 (976)
Q Consensus 728 ~~~~~---~~~~L~l~~~li~~~~~~~~~~---~~l~~~~~~l~~~~~~-~l~~~~~~-~~~pD~~~~~f~l~~~~~~~~ 799 (976)
....+ ....|..++.+... +.+.... ......+..+.+.... ++.+ .. ...||+.-+.|+++..++.+-
T Consensus 346 ~~~~~~~lk~r~l~al~~il~~-~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~--~~~qPF~elr~a~~~~l~~l~~~~ 422 (503)
T PF10508_consen 346 IKSGSTELKLRALHALASILTS-GTDRQDNDILSITESWYESLSGSPLSNLLMS--LLKQPFPELRCAAYRLLQALAAQP 422 (503)
T ss_pred hcCCchHHHHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHhcCCchHHHHHH--HhcCCchHHHHHHHHHHHHHhcCH
Confidence 22222 12346666666543 2221111 1222223322211111 1111 11 234899999999999998865
Q ss_pred CC
Q 002041 800 PQ 801 (976)
Q Consensus 800 p~ 801 (976)
|.
T Consensus 423 Wg 424 (503)
T PF10508_consen 423 WG 424 (503)
T ss_pred HH
Confidence 54
No 52
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=92.87 E-value=21 Score=40.77 Aligned_cols=179 Identities=16% Similarity=0.147 Sum_probs=101.1
Q ss_pred CCcchhhHHHHHHHHhhcccCccc--ccchHHHhhhccCCCCcHHHHHHHHHHHHhcHH-HH-hhCCCCcchHHHHHHHH
Q 002041 465 NEWRPAEAALFCIRAISTYVSVVE--AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSK-WF-DAASSDPSILASVLSIL 540 (976)
Q Consensus 465 ~~w~~~Ea~L~~l~~i~e~~~~~~--~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~-~~-~~~p~~~~~l~~~l~~l 540 (976)
.++...-+++.+++.+.-..+.++ ++.+..+...+.. ...+..+..++.++.-.++ ++ ..||. -...+..+
T Consensus 202 ~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~Wi~KaLv~R~~~~----~~~~~~~L 276 (415)
T PF12460_consen 202 EDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISS-SEDSELRPQALEILIWITKALVMRGHPL----ATELLDKL 276 (415)
T ss_pred CChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcc-cCCcchhHHHHHHHHHHHHHHHHcCCch----HHHHHHHH
Confidence 346667888888888887765543 2334444443411 1122233333333322222 22 33553 45566666
Q ss_pred HcccCCChHHHHHHHHHHHHHHHHhhhhhhc---------CHHHHHHHHH-HHhhccCCCCCCHHhHHHHHHHHHHHHhc
Q 002041 541 TSGMSTSEDTAAAAALAFRHICDDCRKKLCG---------YLDGLYNVYR-TAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (976)
Q Consensus 541 ~~~l~~~~~v~~~A~~al~~l~~~~~~~L~~---------~l~~ll~~~~-~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (976)
+..+.+++ +...|+++|.-+..+....+.. |-.-++..+. .++++. ...+.+.+...+.|++.++..
T Consensus 277 ~~lL~~~~-~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~--~~~~~~~k~~yL~ALs~ll~~ 353 (415)
T PF12460_consen 277 LELLSSPE-LGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGF--KEADDEIKSNYLTALSHLLKN 353 (415)
T ss_pred HHHhCChh-hHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHH--hhcChhhHHHHHHHHHHHHhh
Confidence 67777777 9999999999999874433321 2222222221 122211 012334678889999999999
Q ss_pred CChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhh
Q 002041 611 LPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFR 662 (976)
Q Consensus 611 ~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 662 (976)
+|..-..+.+..++.-+++.+ +-.+ .......|+++..+..
T Consensus 354 vP~~vl~~~l~~LlPLLlqsL----~~~~-------~~v~~s~L~tL~~~l~ 394 (415)
T PF12460_consen 354 VPKSVLLPELPTLLPLLLQSL----SLPD-------ADVLLSSLETLKMILE 394 (415)
T ss_pred CCHHHHHHHHHHHHHHHHHHh----CCCC-------HHHHHHHHHHHHHHHH
Confidence 998777788888777776655 2111 1223446666666655
No 53
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=92.86 E-value=8.6 Score=42.03 Aligned_cols=171 Identities=9% Similarity=0.131 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHhhhccCCCCCcccccchhHHHHHhc-C-----CCcchHH-HHHHHHHHHhhhhccCCCCCccCchhHH
Q 002041 193 ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSS-L-----HSEILSE-ASVNVISELIHYSAAGSSGGATVNMPLI 265 (976)
Q Consensus 193 ~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~~~~~-L-----~~~~~~~-~a~~~l~~ii~~~~~~~~~~~~~~~~~i 265 (976)
.+++.+|+-+..|+.-. +........+++.+++. | +.|+.++ ..+.++..++.+-.... .+.-..++
T Consensus 42 ~iKkeIL~Li~t~i~~~---~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~---~~~v~~I~ 115 (319)
T PF08767_consen 42 TIKKEILKLIETFISKA---EDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELI---QPQVPQIL 115 (319)
T ss_dssp HHHHHHHHHHHHHHHT----S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGC---CCCHHHHH
T ss_pred HHHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhh---hhhHHHHH
Confidence 46788899999999853 21111222333333332 1 3456554 46788888887654321 11222333
Q ss_pred HHHHHHHHhhHHHhhhcc-CCHHHHHHHHHHHHHHhhHHHHHHhcCC-chhHHHHHHHHhhccCCCcchhhhhHHHHHHH
Q 002041 266 QVIVPQIMSLKAHLTDSS-KDEEDVKAIARLFADMGDSYVELIATGS-DESMLIVHALLEVASHPEYDIASMTFNFWHSL 343 (976)
Q Consensus 266 ~~l~~~v~~l~~~~~~~~-~d~e~~~~~~~l~~~~~~~~~~~l~~~~-~~~~~ll~~lL~~~~~~~~~vs~~~l~fW~~l 343 (976)
..++.. ..+.+.+.. +-+|....+.+++..+.+.+...+..-| +.+..+++.++....|++.+|++.++.....+
T Consensus 116 ~~vf~~---Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~l 192 (319)
T PF08767_consen 116 EAVFEC---TLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLEL 192 (319)
T ss_dssp HHHHHH---HHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 444432 223333222 2357788999999999998877776544 56788899999999999999999999998888
Q ss_pred HHHhcccccccccCcccchHHHHHHHHHhhHHHHHHHHHHHHh
Q 002041 344 QVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSF 386 (976)
Q Consensus 344 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~ 386 (976)
.+..... + .+...+.++.+|..++..++.
T Consensus 193 l~~~~~~------~--------~~~~~~F~~~y~~~il~~if~ 221 (319)
T PF08767_consen 193 LNNVSKT------N--------PEFANQFYQQYYLDILQDIFS 221 (319)
T ss_dssp HHHHHH-------S--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc------C--------HHHHHHHHHHHHHHHHHHHHH
Confidence 7766431 0 123345566666666655543
No 54
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=92.85 E-value=1.3 Score=39.53 Aligned_cols=92 Identities=9% Similarity=0.072 Sum_probs=72.5
Q ss_pred HHHHHHHHHcccCC-----ChHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHH
Q 002041 533 LASVLSILTSGMST-----SEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 607 (976)
Q Consensus 533 l~~~l~~l~~~l~~-----~~~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~v 607 (976)
+-.+++.+...+++ +..-+.+|-+++..+++-+++++.++.++++..++..+.. .+-+...+++-...
T Consensus 9 ~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~-------~~l~~~al~~W~~f 81 (107)
T PF08064_consen 9 ILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI-------PELREEALSCWNCF 81 (107)
T ss_pred HHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC-------hhhHHHHHHHHHHH
Confidence 44455555444443 2246889999999999999999999999999999998853 25577789999999
Q ss_pred HhcCChHHHHHHHHHhhhHHHHHH
Q 002041 608 ITELPQVDAKKALEMLCLPVVTPL 631 (976)
Q Consensus 608 i~~~p~~~~~~~l~~ll~p~~~~l 631 (976)
+..+++++..+.+.+++..+++.|
T Consensus 82 i~~L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 82 IKTLDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHhc
Confidence 999999888888888777776654
No 55
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=92.54 E-value=27 Score=41.18 Aligned_cols=218 Identities=11% Similarity=0.119 Sum_probs=116.5
Q ss_pred cHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCC--hHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHH
Q 002041 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS--EDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRT 582 (976)
Q Consensus 505 ~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~--~~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~ 582 (976)
++-||.++..+++-+++-+. ++.+++|+-..-+.. -.-+.-+.+-..++|.-.+-...||+..++.++..
T Consensus 489 deYVRnttarafavvasalg--------ip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~ 560 (1172)
T KOG0213|consen 489 DEYVRNTTARAFAVVASALG--------IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEH 560 (1172)
T ss_pred cHHHHHHHHHHHHHHHHHhC--------cHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHH
Confidence 68899999999888766443 344455543222221 12455666677888887777788999999999988
Q ss_pred HhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhh
Q 002041 583 AVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFR 662 (976)
Q Consensus 583 ~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 662 (976)
.+... ....|..---+++++..+..+- -...+..++.|+-..+++ . ....++..|+.++.++.
T Consensus 561 gl~De-----~qkVR~itAlalsalaeaa~Py-gie~fDsVlkpLwkgir~----h-------rgk~laafLkAigylip 623 (1172)
T KOG0213|consen 561 GLKDE-----QQKVRTITALALSALAEAATPY-GIEQFDSVLKPLWKGIRQ----H-------RGKELAAFLKAIGYLIP 623 (1172)
T ss_pred hhccc-----chhhhhHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHH----c-------cChHHHHHHHHHhhccc
Confidence 77421 1222333333445555543321 114456667776444333 2 23456678888887765
Q ss_pred hcCCcccHHHHHHHHhHHHHHHHHhhc-CCHHHHHHHHHHHHHHHHHhhh---hh-hhhHHHHHHHHHHH---HhhcCCc
Q 002041 663 YVNHPEAVADAIQRLWPIFKAIFDIRA-WDMRTMESLCRACKYAVRTSKR---FM-GITIGAILEEIQGL---YQQHQQP 734 (976)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~~~v~e~~~~~~~~~~~~~~~---~~-~~~l~~l~~~l~~~---~~~~~~~ 734 (976)
-.. ++-..-+..+++-+ +...|+ -|++...-+..+++++..+-|. +. ...+|.++...... ..+...-
T Consensus 624 lmd-~eya~yyTrevmli---l~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~yk 699 (1172)
T KOG0213|consen 624 LMD-AEYASYYTREVMLI---LIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYK 699 (1172)
T ss_pred ccc-HHHHHHhHHHHHHH---HHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchh
Confidence 432 33322233343332 333343 3666666666677766554332 11 12334333222110 0111122
Q ss_pred cHHHHHHHHHHHhCCCC
Q 002041 735 CFLYLSSEVIKIFGSDP 751 (976)
Q Consensus 735 ~~L~l~~~li~~~~~~~ 751 (976)
-..++...+..+.|.++
T Consensus 700 qlv~ttv~ia~KvG~~~ 716 (1172)
T KOG0213|consen 700 QLVDTTVEIAAKVGSDP 716 (1172)
T ss_pred hHHHHHHHHHHHhCchH
Confidence 34566677777777653
No 56
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=92.44 E-value=4.7 Score=42.60 Aligned_cols=175 Identities=14% Similarity=0.192 Sum_probs=100.0
Q ss_pred CCcchhhHHHHHHHHhhcccCcc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhcHH-------HHhhCCCCcch
Q 002041 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSK-------WFDAASSDPSI 532 (976)
Q Consensus 465 ~~w~~~Ea~L~~l~~i~e~~~~~-----~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~-------~~~~~p~~~~~ 532 (976)
.+-.++||+ |++..|+.+-+.. +...+|.++++|..- ...||..++|.+|..+. ++-.. ..
T Consensus 128 ~~mlqfEAa-WalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~--~~~V~eQavWALGNiAGDS~~~RD~vL~~----ga 200 (526)
T COG5064 128 RDMLQFEAA-WALTNIASGTTQQTKVVVDAGAVPLFIQLLSST--EDDVREQAVWALGNIAGDSEGCRDYVLQC----GA 200 (526)
T ss_pred hhHHHHHHH-HHHhhhccCcccceEEEEeCCchHHHHHHHcCc--hHHHHHHHHHHhccccCCchhHHHHHHhc----Cc
Confidence 455567765 7888887765433 245678888877642 56799999999998754 22222 26
Q ss_pred HHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhhhh-hcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcC
Q 002041 533 LASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKL-CGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 611 (976)
Q Consensus 533 l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~~~L-~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~ 611 (976)
+.++++.+.+.-.+-. +.+.|...|.++|..-.+.= ...+..-+..+.+++.. .+.+.....+=+|+++...
T Consensus 201 leplL~ll~ss~~~is-mlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys-----~D~evlvDA~WAiSYlsDg- 273 (526)
T COG5064 201 LEPLLGLLLSSAIHIS-MLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYS-----RDPEVLVDACWAISYLSDG- 273 (526)
T ss_pred hHHHHHHHHhccchHH-HHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhh-----cCHHHHHHHHHHHHHhccC-
Confidence 8889988875444434 66777888899987522211 12233344444444432 4556666666666655433
Q ss_pred ChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhh
Q 002041 612 PQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRY 663 (976)
Q Consensus 612 p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 663 (976)
|.+.....+.. .+..+|-.++..... .....+|..++.++.+
T Consensus 274 ~~E~i~avld~---g~~~RLvElLs~~sa-------~iqtPalR~vGNIVTG 315 (526)
T COG5064 274 PNEKIQAVLDV---GIPGRLVELLSHESA-------KIQTPALRSVGNIVTG 315 (526)
T ss_pred cHHHHHHHHhc---CCcHHHHHHhcCccc-------cccCHHHHhhcCeeec
Confidence 44444444332 233345555554321 1123456666655543
No 57
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=92.40 E-value=0.12 Score=39.72 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCCh-HHHHHHHHHHHHH
Q 002041 506 PQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHI 561 (976)
Q Consensus 506 ~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l 561 (976)
|.+|..+++.||+.+.-....- ..+++.++..+...+.+++ .|+..|+.||.++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~--~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELL--QPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHH--HHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHH--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 6799999999998542111110 1278888899988887653 5999999998754
No 58
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=91.66 E-value=38 Score=41.03 Aligned_cols=173 Identities=9% Similarity=0.094 Sum_probs=86.5
Q ss_pred HHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcCC--HHHHHHHHHHHHHHHH---HhhhhhhhhHHHHHHHHHHHHh
Q 002041 655 DRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWD--MRTMESLCRACKYAVR---TSKRFMGITIGAILEEIQGLYQ 729 (976)
Q Consensus 655 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~--~~v~e~~~~~~~~~~~---~~~~~~~~~l~~l~~~l~~~~~ 729 (976)
..+.++...+ +++++.+....++..+.++...+..+ .-++|.+|.+++.=-. +.+.- ..|.++..+. .|.
T Consensus 510 ~a~~~~~~~~-~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~sk---I~P~~i~lF~-k~s 584 (1005)
T KOG2274|consen 510 SAVRAFCGYC-KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESK---ICPLTINLFL-KYS 584 (1005)
T ss_pred HHHHHHHhcc-CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcc---hhHHHHHHHH-Hhc
Confidence 3334333333 56777766666666666666554432 2357777777662110 11111 2232332221 233
Q ss_pred hcCCccHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhhhcCcccCCCCCccHHHHHHHHHHHHhhCCCcccC---c
Q 002041 730 QHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIP---S 806 (976)
Q Consensus 730 ~~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~---~ 806 (976)
..| .....+..+++...+...+ ...+.+.++....+.++. ++-..++.+..--..++..++|+.|.-+-. .
T Consensus 585 ~DP--~V~~~~qd~f~el~q~~~~---~g~m~e~~iPslisil~~-~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~ 658 (1005)
T KOG2274|consen 585 EDP--QVASLAQDLFEELLQIAAN---YGPMQERLIPSLISVLQL-NADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC 658 (1005)
T ss_pred CCc--hHHHHHHHHHHHHHHHHHh---hcchHHHHHHHHHHHHcC-cccccCchhhHHHHHHHHHHHhcCCCCccHHHHH
Confidence 333 3333333333322221111 112223333333444543 222334666777778899999998877432 1
Q ss_pred CChHHHHHHHHHhcccCCchhHHHHHHHHHHhhcc
Q 002041 807 SVFPSLVDCSMIGITVQHREASNSILTFLSDIFDL 841 (976)
Q Consensus 807 ~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~l~~~ 841 (976)
-.|+.+.+|. +...+.++...+..+|..+++.
T Consensus 659 ~~FpaVak~t---lHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 659 YAFPAVAKIT---LHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred HHhHHhHhhe---eecCChHHHHhHHHHHHHHHhc
Confidence 2345555543 4456777788888888888875
No 59
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=91.64 E-value=2.1 Score=44.32 Aligned_cols=137 Identities=14% Similarity=0.232 Sum_probs=81.7
Q ss_pred CCCcchhhHHHHHHHHhhccc-Ccccc-cc---hHHHhhhcc-CCCC-cHHHHHHHHHHHHhcHHHHhhCCCCcchHHHH
Q 002041 464 HNEWRPAEAALFCIRAISTYV-SVVEA-EV---MPQVMALLP-KLPQ-QPQLLQTVCLTIGAYSKWFDAASSDPSILASV 536 (976)
Q Consensus 464 ~~~w~~~Ea~L~~l~~i~e~~-~~~~~-~~---l~~l~~~l~-~~~~-~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~ 536 (976)
+.+|.....++--+..+..+- +.... .+ +..++..+. .+.+ ...|..++|.+++.++.-+..+-+ .++..+
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~--~~~~~~ 95 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFE--PYADIL 95 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGH--HHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHH--HHHHHH
Confidence 678999999999888887654 22111 11 222222222 3332 457999999999999988877522 367778
Q ss_pred HHHHHcccCCCh-HHHHHHHHHHHHHHHHhhhhhhcCHHHH-HHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCC
Q 002041 537 LSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGL-YNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 612 (976)
Q Consensus 537 l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~L~~~l~~l-l~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p 612 (976)
++.++..+.++. .++..|..++..+++.|. +.+.+ ...+...... -+...|....+.+..++...+
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~-----Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKS-----KNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT------S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHHcc
Confidence 888877777654 488899999999999876 11122 3333333321 357789999999999999988
No 60
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=91.52 E-value=30 Score=39.54 Aligned_cols=74 Identities=16% Similarity=0.235 Sum_probs=56.6
Q ss_pred cHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHhcccCCchhHHHHHHHHHHhhcccCCCCchhhHHHHHHHHhhchH
Q 002041 784 VADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGA 863 (976)
Q Consensus 784 ~~~~~f~l~~~~~~~~p~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~l~~~~~~~~~~~~~~~~~~~~~~~g~ 863 (976)
....|+.-+..++++.|..++. +.++.++...+.++..++.+...++++.+..++.-. + +.+.+|-.
T Consensus 339 ~k~~yL~ALs~ll~~vP~~vl~-~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-----~-------~~i~~hl~ 405 (415)
T PF12460_consen 339 IKSNYLTALSHLLKNVPKSVLL-PELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-----P-------ELISEHLS 405 (415)
T ss_pred hHHHHHHHHHHHHhhCCHHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-----H-------HHHHHHHH
Confidence 7788888899999999976654 257888999999999999999999999999988532 1 33445555
Q ss_pred HHHHHHH
Q 002041 864 SITRILI 870 (976)
Q Consensus 864 ~lv~~ll 870 (976)
.+|..++
T Consensus 406 sLI~~LL 412 (415)
T PF12460_consen 406 SLIPRLL 412 (415)
T ss_pred HHHHHHH
Confidence 6666554
No 61
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=91.07 E-value=0.5 Score=42.96 Aligned_cols=95 Identities=15% Similarity=0.166 Sum_probs=62.0
Q ss_pred CCcchhhHHHHHHHHhhcccCccc-----ccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchH-HHHHH
Q 002041 465 NEWRPAEAALFCIRAISTYVSVVE-----AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVLS 538 (976)
Q Consensus 465 ~~w~~~Ea~L~~l~~i~e~~~~~~-----~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l-~~~l~ 538 (976)
.+|..++.++++++.++...+... ...++.+++.+.. .++.++..+++++++++......+. ... ..++.
T Consensus 19 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~g~l~ 94 (120)
T cd00020 19 SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS--EDEEVVKAALWALRNLAAGPEDNKL--IVLEAGGVP 94 (120)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC--CCHHHHHHHHHHHHHHccCcHHHHH--HHHHCCChH
Confidence 458999999999999997743332 2556666666543 3789999999999998753322111 011 11334
Q ss_pred HHHcccCCC-hHHHHHHHHHHHHHHH
Q 002041 539 ILTSGMSTS-EDTAAAAALAFRHICD 563 (976)
Q Consensus 539 ~l~~~l~~~-~~v~~~A~~al~~l~~ 563 (976)
.+.+.+++. .+++..|+.+|.++|+
T Consensus 95 ~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 95 KLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 444444443 2489999999999874
No 62
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=90.76 E-value=5.9 Score=45.15 Aligned_cols=286 Identities=13% Similarity=0.176 Sum_probs=140.0
Q ss_pred hHHHHHHHHHcccCCCh-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhc
Q 002041 532 ILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (976)
Q Consensus 532 ~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (976)
+...++.-++..+..+. .=-...-+++++++..+++.+.|+...+++.+...+.......-.+.=-.+++|++|.+|..
T Consensus 23 ~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~ 102 (435)
T PF03378_consen 23 FAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRF 102 (435)
T ss_dssp CHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHh
Confidence 45666666666554321 01233456788898888888888888888777666542111112344567899999999988
Q ss_pred CChHH--HHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhh-hHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHh
Q 002041 611 LPQVD--AKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLT-VHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDI 687 (976)
Q Consensus 611 ~p~~~--~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ 687 (976)
..... ....++..+-|. ++.++++... +.. -....++.+.+... ..+..+.+.+++|.+..- ..
T Consensus 103 ~~~~~~~~v~~~E~~L~P~---f~~ILq~dV~--------EF~PYvfQIla~Lle~~~-~~~~p~~y~~L~~~Ll~p-~l 169 (435)
T PF03378_consen 103 VCEADPEAVSQFEEALFPP---FQEILQQDVQ--------EFIPYVFQILAQLLELRP-SSPLPDAYKQLFPPLLSP-AL 169 (435)
T ss_dssp S-GGGHH---HHHHHHHHH---HHHHHHTT-T--------TTHHHHHHHHHHHHHHSS---S--TTTGGGHHHHTSG-GG
T ss_pred ccCCChhHHHHHHHHHHHH---HHHHHHHHHH--------HHHHHHHHHHHHHHHcCC-CCCCcHHHHHHHHHHcCc-ch
Confidence 65432 223444444444 4566665431 111 13556676666543 123333333444333221 22
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHHHhh-cCCccHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Q 002041 688 RAWDMRTMESLCRACKYAVRTSKRFM--GITIGAILEEIQGLYQQ-HQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEAL 764 (976)
Q Consensus 688 ~~~~~~v~e~~~~~~~~~~~~~~~~~--~~~l~~l~~~l~~~~~~-~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l 764 (976)
|.....| -++.++++..++.-+.++ .+.+.+++.....-... .......+++..++..+..+ .+.+.+.+++..+
T Consensus 170 We~~gni-PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~gF~LL~~iv~~~p~~-~l~~yl~~I~~ll 247 (435)
T PF03378_consen 170 WERRGNI-PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKANDHYGFDLLESIVENLPPE-ALEPYLKQIFTLL 247 (435)
T ss_dssp GGSTTTH-HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHS-HH-HHGGGHHHHHHHH
T ss_pred hccCCCc-CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHCCHH-HHHHHHHHHHHHH
Confidence 3221111 233344444333322222 13344444433222221 12234568899999877653 2455555555544
Q ss_pred HHHHHhhhcCcccCCCCCccHHHHHHHHHHHH-hhCCCcccC------cCChHHHHHH-HHHhccc-CCchhHHHHHHHH
Q 002041 765 FKRTTCLLTSIEEFTSRPDVADDCFLLASRCI-RYCPQLFIP------SSVFPSLVDC-SMIGITV-QHREASNSILTFL 835 (976)
Q Consensus 765 ~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~-~~~p~~~~~------~~~l~~~~~~-~~~~l~~-~~~~~~~~~~~fl 835 (976)
+++ |++ ...+..++.+..|+.-+. ++.|..++. +..+..++.- .+..+.. ..+..-|.+.--+
T Consensus 248 l~R----Lq~----skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGl 319 (435)
T PF03378_consen 248 LTR----LQS----SKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGL 319 (435)
T ss_dssp HHH----HHH----C--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHH
T ss_pred HHH----Hhh----CCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHH
Confidence 433 332 223446777777766554 456665543 3455566542 3444432 3334456666667
Q ss_pred HHhhc
Q 002041 836 SDIFD 840 (976)
Q Consensus 836 ~~l~~ 840 (976)
++++.
T Consensus 320 tkLL~ 324 (435)
T PF03378_consen 320 TKLLC 324 (435)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77774
No 63
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=89.37 E-value=0.15 Score=39.23 Aligned_cols=52 Identities=13% Similarity=0.206 Sum_probs=40.2
Q ss_pred cchhhHHHHHHHHhhcccCcccccchHHHhhhcc-CCC-CcHHHHHHHHHHHHh
Q 002041 467 WRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KLP-QQPQLLQTVCLTIGA 518 (976)
Q Consensus 467 w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~-~~~-~~~~v~~t~~~~ig~ 518 (976)
|+-+++++++|+.+++.......++++.++..|. .+. +++.||.++++.+|+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 6778999999999887776666667777777654 232 467999999999996
No 64
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=89.27 E-value=14 Score=38.20 Aligned_cols=184 Identities=10% Similarity=0.026 Sum_probs=94.5
Q ss_pred cHHHHHHHHHHHHhcHHHH--hhCCC-CcchHHHHHHHHHcccCCCh-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHH
Q 002041 505 QPQLLQTVCLTIGAYSKWF--DAASS-DPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVY 580 (976)
Q Consensus 505 ~~~v~~t~~~~ig~y~~~~--~~~p~-~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~ 580 (976)
+-.-|..++.-+.++...- ..++. ....+..++..+...+.+.. .|...|+..+..++..++..+.|+++.++..+
T Consensus 20 ~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~L 99 (228)
T PF12348_consen 20 DWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPL 99 (228)
T ss_dssp SHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 4455666666666554433 11111 00123333345555555432 48999999999999999999999999999888
Q ss_pred HHHhhccCCCCCCHHhHHHHHHHHHHHHhcCC-hHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHH
Q 002041 581 RTAVNGEGSLKVSAEDSLHLVEALSMVITELP-QVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAY 659 (976)
Q Consensus 581 ~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p-~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 659 (976)
...+..+ ...-+....+++..++...+ ... ++.+. +.....+.+ +..-...+..+..
T Consensus 100 l~~~~~~-----~~~i~~~a~~~L~~i~~~~~~~~~-------~~~~~---l~~~~~~Kn-------~~vR~~~~~~l~~ 157 (228)
T PF12348_consen 100 LKKLGDS-----KKFIREAANNALDAIIESCSYSPK-------ILLEI---LSQGLKSKN-------PQVREECAEWLAI 157 (228)
T ss_dssp HHGGG--------HHHHHHHHHHHHHHHTTS-H--H-------HHHHH---HHHHTT-S--------HHHHHHHHHHHHH
T ss_pred HHHHccc-----cHHHHHHHHHHHHHHHHHCCcHHH-------HHHHH---HHHHHhCCC-------HHHHHHHHHHHHH
Confidence 7766431 23456677777777777765 222 11111 122222111 1111235666676
Q ss_pred HhhhcCC-cccHH--HHHHHHhHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhhh
Q 002041 660 IFRYVNH-PEAVA--DAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRF 712 (976)
Q Consensus 660 ~~~~~~~-~~~~~--~~~~~~~~~l~~ll~~~~~~~~v~e~~~~~~~~~~~~~~~~ 712 (976)
++...+. ..... ..+..+.+.+...+. ..+++|++.+..++......+|..
T Consensus 158 ~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~--D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 158 ILEKWGSDSSVLQKSAFLKQLVKALVKLLS--DADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp HHTT-----GGG--HHHHHHHHHHHHHHHT--SS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHccchHhhhcccchHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHCCHh
Confidence 6666541 11111 123445555544443 357889999888888776665543
No 65
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=88.56 E-value=55 Score=38.05 Aligned_cols=360 Identities=12% Similarity=0.082 Sum_probs=188.1
Q ss_pred cHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCCh-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHH
Q 002041 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTA 583 (976)
Q Consensus 505 ~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~ 583 (976)
+..+|....-.-|..+..+..... ...+++..++..++.|. .++...+.++..+.-.....- .+.+...+.++
T Consensus 69 ~~~~~~~~~v~~~~~a~~~~~~d~---~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~---~~~~l~~l~~l 142 (569)
T KOG1242|consen 69 NDNLRNNVVVLEGTLAFHLQIVDP---RPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLS---GEYVLELLLEL 142 (569)
T ss_pred hHHHhhhhHHHHHHHHHhccccCc---chhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccC---HHHHHHHHHHH
Confidence 456777777777766665554322 46677888888888774 477777766666554322211 22233333333
Q ss_pred hhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhh
Q 002041 584 VNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRY 663 (976)
Q Consensus 584 ~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 663 (976)
+.. -....+...-.+++.++...+.+...+ .+++..+...+....+. ..+. ...+. .-+.+..
T Consensus 143 l~~-----~~~~~~~~aa~~~ag~v~g~~i~~~~~------~~~l~~l~~ai~dk~~~----~~re-~~~~a-~~~~~~~ 205 (569)
T KOG1242|consen 143 LTS-----TKIAERAGAAYGLAGLVNGLGIESLKE------FGFLDNLSKAIIDKKSA----LNRE-AALLA-FEAAQGN 205 (569)
T ss_pred hcc-----ccHHHHhhhhHHHHHHHcCcHHhhhhh------hhHHHHHHHHhcccchh----hcHH-HHHHH-HHHHHHh
Confidence 332 235677777788888887765443322 23444455554433211 1121 11121 2222333
Q ss_pred cCCc-ccHHHHHHHHhHHHHHHHHhhc-CCHHHHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHhhcCC-ccHHHH
Q 002041 664 VNHP-EAVADAIQRLWPIFKAIFDIRA-WDMRTMESLCRACKYAVRTSKRF-MGITIGAILEEIQGLYQQHQQ-PCFLYL 739 (976)
Q Consensus 664 ~~~~-~~~~~~~~~~~~~l~~ll~~~~-~~~~v~e~~~~~~~~~~~~~~~~-~~~~l~~l~~~l~~~~~~~~~-~~~L~l 739 (976)
++.+ +| -+.|++-.++.+++ ....|.+++..+.+.+.+++..+ +.-++|+++.-+... ..+. ...+.+
T Consensus 206 Lg~~~EP------yiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~--kWrtK~aslel 277 (569)
T KOG1242|consen 206 LGPPFEP------YIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA--KWRTKMASLEL 277 (569)
T ss_pred cCCCCCc------hHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH--hhhhHHHHHHH
Confidence 3322 23 23455556666663 46678999999999888887665 445677777655443 1121 233455
Q ss_pred HHHHHHHhCCCCcchHHHHHHHHHHHHHHHhhhcCcccCCCCCccHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHh
Q 002041 740 SSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIG 819 (976)
Q Consensus 740 ~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 819 (976)
++.+...-. ..+...+..++..+...+. +.+|++.++...-+.++... +..+.++.++...+.+
T Consensus 278 lg~m~~~ap------~qLs~~lp~iiP~lsevl~-----DT~~evr~a~~~~l~~~~sv-----idN~dI~~~ip~Lld~ 341 (569)
T KOG1242|consen 278 LGAMADCAP------KQLSLCLPDLIPVLSEVLW-----DTKPEVRKAGIETLLKFGSV-----IDNPDIQKIIPTLLDA 341 (569)
T ss_pred HHHHHHhch------HHHHHHHhHhhHHHHHHHc-----cCCHHHHHHHHHHHHHHHHh-----hccHHHHHHHHHHHHH
Confidence 554443211 2333444444444444443 67899999988877777653 2223356666666666
Q ss_pred cccCCchhHHHHHHHHH--HhhcccCCCCchhhHHHHHHHHhhchHHHHHHHHHHcccCCCCCCcccHHHHHHHHHHHh-
Q 002041 820 ITVQHREASNSILTFLS--DIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAY- 896 (976)
Q Consensus 820 l~~~~~~~~~~~~~fl~--~l~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~~~~~~~~~~~~L~~l~~~~- 896 (976)
+.-+...+.. +.+-+. .|+..- +.+. ..-+|..+-+++. +-..+.-+..+.++..+++..
T Consensus 342 l~dp~~~~~e-~~~~L~~ttFV~~V---~~ps------------LalmvpiL~R~l~-eRst~~kr~t~~IidNm~~Lve 404 (569)
T KOG1242|consen 342 LADPSCYTPE-CLDSLGATTFVAEV---DAPS------------LALMVPILKRGLA-ERSTSIKRKTAIIIDNMCKLVE 404 (569)
T ss_pred hcCcccchHH-HHHhhcceeeeeee---cchh------------HHHHHHHHHHHHh-hccchhhhhHHHHHHHHHHhhc
Confidence 7655433222 222111 111110 0111 1112222223331 223334466778888887765
Q ss_pred -hHHHHHHHHHHHhhCCCC--CCCHHHHHHHHHHH
Q 002041 897 -GVRSLEWAKESVSLIPLT--ALAEVERSRFLQAL 928 (976)
Q Consensus 897 -~~~~~~wl~~~l~~~p~~--~~~~~~k~~f~~~l 928 (976)
|.....++...++++-.. ..-||.|..-.+++
T Consensus 405 Dp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL 439 (569)
T KOG1242|consen 405 DPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARAL 439 (569)
T ss_pred CHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHH
Confidence 666777777766433221 11467777666665
No 66
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=88.19 E-value=0.55 Score=31.11 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=22.5
Q ss_pred HHHHHcccCCCh-HHHHHHHHHHHHHHHHh
Q 002041 537 LSILTSGMSTSE-DTAAAAALAFRHICDDC 565 (976)
Q Consensus 537 l~~l~~~l~~~~-~v~~~A~~al~~l~~~~ 565 (976)
++.+.++++++. +|+.+|+.+|..+++.|
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 556667777764 59999999999999865
No 67
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.64 E-value=22 Score=40.79 Aligned_cols=255 Identities=15% Similarity=0.166 Sum_probs=139.5
Q ss_pred ChHHHHHHHHHHHHHHHHhhh---hhh--cCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHH-
Q 002041 547 SEDTAAAAALAFRHICDDCRK---KLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKAL- 620 (976)
Q Consensus 547 ~~~v~~~A~~al~~l~~~~~~---~L~--~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l- 620 (976)
|. ++..|+.|+.+++..... ... .-++.|+ .++.+ -+.+.++..+=|+|.++.--|. ..++.
T Consensus 124 ~~-lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi----~Ll~s-----~~~~v~eQavWALgNIagds~~--~Rd~vl 191 (514)
T KOG0166|consen 124 PT-LQFEAAWALTNIASGTSEQTKVVVDAGAVPIFI----QLLSS-----PSADVREQAVWALGNIAGDSPD--CRDYVL 191 (514)
T ss_pred hh-HHHHHHHHHHHHhcCchhhccccccCCchHHHH----HHhcC-----CcHHHHHHHHHHHhccccCChH--HHHHHH
Confidence 44 999999999999975433 222 2344333 33332 2466788899999999887553 33332
Q ss_pred -HHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcCCHHHHHHHH
Q 002041 621 -EMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLC 699 (976)
Q Consensus 621 -~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~v~e~~~ 699 (976)
...+.|++..+ ..... ...+....=+++.++++-+ |.|....++.++|++..++. ..|++|..-+|
T Consensus 192 ~~g~l~pLl~~l----~~~~~------~~~lRn~tW~LsNlcrgk~-P~P~~~~v~~iLp~L~~ll~--~~D~~Vl~Da~ 258 (514)
T KOG0166|consen 192 SCGALDPLLRLL----NKSDK------LSMLRNATWTLSNLCRGKN-PSPPFDVVAPILPALLRLLH--STDEEVLTDAC 258 (514)
T ss_pred hhcchHHHHHHh----ccccc------hHHHHHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHHHHHh--cCCHHHHHHHH
Confidence 23455554433 22110 0111223445677787644 77877888899999988875 47888888888
Q ss_pred HHHHHHHHHhhhhhh-----hhHHHHHHHHHHHHhhcCCccHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhhhcC
Q 002041 700 RACKYAVRTSKRFMG-----ITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTS 774 (976)
Q Consensus 700 ~~~~~~~~~~~~~~~-----~~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~ 774 (976)
-++.+......+... ..+|.+++.+.. .+..-....|..++.++. |.|......+.. ..+.....++.
T Consensus 259 WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~-~~~~v~~PaLRaiGNIvt--G~d~QTq~vi~~---~~L~~l~~ll~- 331 (514)
T KOG0166|consen 259 WALSYLTDGSNEKIQMVIDAGVVPRLVDLLGH-SSPKVVTPALRAIGNIVT--GSDEQTQVVINS---GALPVLSNLLS- 331 (514)
T ss_pred HHHHHHhcCChHHHHHHHHccchHHHHHHHcC-CCcccccHHHhhccceee--ccHHHHHHHHhc---ChHHHHHHHhc-
Confidence 888876533222111 223444443321 111112334555555443 444221111110 11111122222
Q ss_pred cccCCCCCc-cHHHHHHHHHHHHhhCCC---cccCcCChHHHHHHHHHhcccCCchhHHHHHHHHHHhhcc
Q 002041 775 IEEFTSRPD-VADDCFLLASRCIRYCPQ---LFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDL 841 (976)
Q Consensus 775 ~~~~~~~pD-~~~~~f~l~~~~~~~~p~---~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~l~~~ 841 (976)
....+ +.++-.=.++.+...++. .++..++++.++.+ +...+....|-|+-.++++...
T Consensus 332 ----~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~----l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 332 ----SSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINL----LQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred ----cCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHH----HhccchHHHHHHHHHHHhhccc
Confidence 12333 667677777777765553 34444555555544 6666777888888877776643
No 68
>PRK09687 putative lyase; Provisional
Probab=87.31 E-value=45 Score=35.68 Aligned_cols=137 Identities=9% Similarity=0.023 Sum_probs=75.5
Q ss_pred hcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcccccchHHHhhhccCCCCcHHHHHHHHHHHHh
Q 002041 439 VLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGA 518 (976)
Q Consensus 439 ~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~ 518 (976)
.+|.+..+..+...+. +.+-..+..+.++|+.++..-.. ..+.++.+...+.+= ..+.||..++..+|.
T Consensus 49 ~~~~~~~~~~l~~ll~---------~~d~~vR~~A~~aLg~lg~~~~~-~~~a~~~L~~l~~~D-~d~~VR~~A~~aLG~ 117 (280)
T PRK09687 49 LRGGQDVFRLAIELCS---------SKNPIERDIGADILSQLGMAKRC-QDNVFNILNNLALED-KSACVRASAINATGH 117 (280)
T ss_pred hcCcchHHHHHHHHHh---------CCCHHHHHHHHHHHHhcCCCccc-hHHHHHHHHHHHhcC-CCHHHHHHHHHHHhc
Confidence 4565555554443322 23445677888888887752110 112333333332222 368999999999998
Q ss_pred cHHHHhhCCCCcchHHHHHHHHHcccCCCh-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhH
Q 002041 519 YSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDS 597 (976)
Q Consensus 519 y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~ 597 (976)
.+. .++. ..+.++..+...+.++. .|+..|+.||.++.. +.-+..+..++.. -+.+.|
T Consensus 118 ~~~---~~~~---~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----------~~ai~~L~~~L~d-----~~~~VR 176 (280)
T PRK09687 118 RCK---KNPL---YSPKIVEQSQITAFDKSTNVRFAVAFALSVIND----------EAAIPLLINLLKD-----PNGDVR 176 (280)
T ss_pred ccc---cccc---cchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC----------HHHHHHHHHHhcC-----CCHHHH
Confidence 642 1111 33455555555554432 489999998865432 1123334444432 234678
Q ss_pred HHHHHHHHHH
Q 002041 598 LHLVEALSMV 607 (976)
Q Consensus 598 ~~l~eai~~v 607 (976)
....+++|.+
T Consensus 177 ~~A~~aLg~~ 186 (280)
T PRK09687 177 NWAAFALNSN 186 (280)
T ss_pred HHHHHHHhcC
Confidence 8888888866
No 69
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.90 E-value=74 Score=37.72 Aligned_cols=95 Identities=14% Similarity=0.184 Sum_probs=59.8
Q ss_pred HHHHhhcccCcc-cccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCCh-HHHHH
Q 002041 476 CIRAISTYVSVV-EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAA 553 (976)
Q Consensus 476 ~l~~i~e~~~~~-~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~ 553 (976)
||+++|.-++++ ..+.-+.+|.++.. +.|.+|+.++.++-+ -|-++|+ -+.++++-+..-|.+|. .|+++
T Consensus 129 AL~GLS~fvTpdLARDLa~Dv~tLL~s--skpYvRKkAIl~lyk---vFLkYPe---Alr~~FprL~EkLeDpDp~V~SA 200 (877)
T KOG1059|consen 129 ALSGLSCIVTPDLARDLADDVFTLLNS--SKPYVRKKAILLLYK---VFLKYPE---ALRPCFPRLVEKLEDPDPSVVSA 200 (877)
T ss_pred eecccccccCchhhHHHHHHHHHHHhc--CchHHHHHHHHHHHH---HHHhhhH---hHhhhHHHHHHhccCCCchHHHH
Confidence 344444444544 23556777777653 257889888877754 3455676 78999999999998875 47877
Q ss_pred HHHHHHHHHHHhhhhhhcCHHHHHH
Q 002041 554 AALAFRHICDDCRKKLCGYLDGLYN 578 (976)
Q Consensus 554 A~~al~~l~~~~~~~L~~~l~~ll~ 578 (976)
|..-|=.|++...+...+..+.|+.
T Consensus 201 AV~VICELArKnPknyL~LAP~ffk 225 (877)
T KOG1059|consen 201 AVSVICELARKNPQNYLQLAPLFYK 225 (877)
T ss_pred HHHHHHHHHhhCCcccccccHHHHH
Confidence 7765555555444444444444443
No 70
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=86.66 E-value=8.6 Score=37.47 Aligned_cols=132 Identities=12% Similarity=0.131 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhc
Q 002041 445 TLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAY 519 (976)
Q Consensus 445 ~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~-----~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y 519 (976)
.+..+...+.+.+. +.+...+-+++..++.+.+..+.+ ...++..+++.|.+ ++.+.+...++.++++.
T Consensus 22 ~l~~l~~ri~~LL~-----s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~-~~~~~~~~~ai~~L~~l 95 (165)
T PF08167_consen 22 ALHKLVTRINSLLQ-----SKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEK-PDPPSVLEAAIITLTRL 95 (165)
T ss_pred HHHHHHHHHHHHhC-----CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 34444444444442 344555567888888888776432 24566666666665 55678899999999999
Q ss_pred HHHHhhCCCCc-----chHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHH
Q 002041 520 SKWFDAASSDP-----SILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTA 583 (976)
Q Consensus 520 ~~~~~~~p~~~-----~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~ 583 (976)
..+....|+.. ..++++++.+++-++.+. +...+..+|..+...-..-+.||...+-..+..+
T Consensus 96 ~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~~~-~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 96 FDLIRGKPTLTREIATPNLPKFIQSLLQLLQDSS-CPETALDALATLLPHHPTTFRPFANKIESALLSL 163 (165)
T ss_pred HHHhcCCCchHHHHhhccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence 99888877631 356777777666555444 6778888888888776666777777766655544
No 71
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=84.97 E-value=1.7e+02 Score=40.13 Aligned_cols=212 Identities=14% Similarity=0.126 Sum_probs=119.9
Q ss_pred CCCcchhhHHHHHHHHhhcccCcccccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCC------CcchHHHHH
Q 002041 464 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASS------DPSILASVL 537 (976)
Q Consensus 464 ~~~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~------~~~~l~~~l 537 (976)
+.+++-.+.++++|..+... .+++.++.+...+.. ..+.+...+++++|....-...+.. ...-++.+.
T Consensus 541 sgd~~~q~~Aa~AL~nLi~~---~d~~~I~~Lv~LLls--dd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv 615 (2102)
T PLN03200 541 NGGPKGQEIAAKTLTKLVRT---ADAATISQLTALLLG--DLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLI 615 (2102)
T ss_pred CCCHHHHHHHHHHHHHHHhc---cchhHHHHHHHHhcC--CChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHH
Confidence 34677889999999988654 234566777766432 2455566667777665442222110 001344444
Q ss_pred HHHHcccCCChHHHHHHHHHHHHHHHHhhhh---h--hcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCC
Q 002041 538 SILTSGMSTSEDTAAAAALAFRHICDDCRKK---L--CGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 612 (976)
Q Consensus 538 ~~l~~~l~~~~~v~~~A~~al~~l~~~~~~~---L--~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p 612 (976)
..+-.+ +++.+..|+.++.++|...++. + ..-+++++..+.. -+.+.+.....+++.+.....
T Consensus 616 ~LL~sg---s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss---------~~~~v~keAA~AL~nL~~~~~ 683 (2102)
T PLN03200 616 QLLSSS---KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTN---------NTEAVATQSARALAALSRSIK 683 (2102)
T ss_pred HHHcCC---CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhc---------CChHHHHHHHHHHHHHHhCCC
Confidence 444322 2348999999999999754332 1 2556666655432 245678888889888887655
Q ss_pred hHHHHHHHHH-hhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCCcccHHHHH-HHHhHHHHHHHHhhcC
Q 002041 613 QVDAKKALEM-LCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI-QRLWPIFKAIFDIRAW 690 (976)
Q Consensus 613 ~~~~~~~l~~-ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~~ 690 (976)
.++...++.. .+.|+++-+ ...+ .+....++..++.+++. ++....+. ...+|.+..++.. +
T Consensus 684 ~~q~~~~v~~GaV~pL~~LL----~~~d-------~~v~e~Al~ALanLl~~---~e~~~ei~~~~~I~~Lv~lLr~--G 747 (2102)
T PLN03200 684 ENRKVSYAAEDAIKPLIKLA----KSSS-------IEVAEQAVCALANLLSD---PEVAAEALAEDIILPLTRVLRE--G 747 (2102)
T ss_pred HHHHHHHHHcCCHHHHHHHH----hCCC-------hHHHHHHHHHHHHHHcC---chHHHHHHhcCcHHHHHHHHHh--C
Confidence 4444444443 566655443 3221 12223456666666653 22222222 3445666666654 4
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 002041 691 DMRTMESLCRACKYAVRT 708 (976)
Q Consensus 691 ~~~v~e~~~~~~~~~~~~ 708 (976)
+.+..+.++.++....+.
T Consensus 748 ~~~~k~~Aa~AL~~L~~~ 765 (2102)
T PLN03200 748 TLEGKRNAARALAQLLKH 765 (2102)
T ss_pred ChHHHHHHHHHHHHHHhC
Confidence 556778877777665543
No 72
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=83.88 E-value=22 Score=35.08 Aligned_cols=145 Identities=10% Similarity=0.136 Sum_probs=79.9
Q ss_pred HHHHHHhhcccCcccccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCC-hHHHH
Q 002041 474 LFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAA 552 (976)
Q Consensus 474 L~~l~~i~e~~~~~~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~-~~v~~ 552 (976)
+-+++-++-..+.--+++++.+...|.. ++|.||++++.++..... .+.- ..=+.++..+..++.++ ..++.
T Consensus 9 i~~l~DL~~r~~~~ve~~~~~l~~~L~D--~~~~VR~~al~~Ls~Li~---~d~i--k~k~~l~~~~l~~l~D~~~~Ir~ 81 (178)
T PF12717_consen 9 IIALGDLCIRYPNLVEPYLPNLYKCLRD--EDPLVRKTALLVLSHLIL---EDMI--KVKGQLFSRILKLLVDENPEIRS 81 (178)
T ss_pred HHHHHHHHHhCcHHHHhHHHHHHHHHCC--CCHHHHHHHHHHHHHHHH---cCce--eehhhhhHHHHHHHcCCCHHHHH
Confidence 3344444433333234556666665543 378999999999987642 2211 11123333333444544 35999
Q ss_pred HHHHHHHHHHHH-hhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCC-hHHHHHHHHHhhhHHH
Q 002041 553 AAALAFRHICDD-CRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP-QVDAKKALEMLCLPVV 628 (976)
Q Consensus 553 ~A~~al~~l~~~-~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p-~~~~~~~l~~ll~p~~ 628 (976)
.|...|..+... .+..+...++.++..+.+..+.+.....+.+.+..+|+-+ +.-++ +.+.....+.++.-+.
T Consensus 82 ~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fl---l~~i~~d~~~~~l~~kl~~~~~ 156 (178)
T PF12717_consen 82 LARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFL---LDFIDKDKQKESLVEKLCQRFL 156 (178)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHH---HHHcCcHHHHHHHHHHHHHHHH
Confidence 999999999887 4555666666666655443221000024566777777666 45554 3333355555554443
No 73
>PRK09687 putative lyase; Provisional
Probab=83.48 E-value=68 Score=34.33 Aligned_cols=212 Identities=16% Similarity=0.085 Sum_probs=109.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHH
Q 002041 8 KEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSL 87 (976)
Q Consensus 8 ~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~~~lr~~L 87 (976)
+..+..| .++|...|..|...|.++. +++++..+..++.+ .++.+|.+|+..|-..-.. .......-..|
T Consensus 26 ~~L~~~L-~d~d~~vR~~A~~aL~~~~-~~~~~~~l~~ll~~--~d~~vR~~A~~aLg~lg~~------~~~~~~a~~~L 95 (280)
T PRK09687 26 DELFRLL-DDHNSLKRISSIRVLQLRG-GQDVFRLAIELCSS--KNPIERDIGADILSQLGMA------KRCQDNVFNIL 95 (280)
T ss_pred HHHHHHH-hCCCHHHHHHHHHHHHhcC-cchHHHHHHHHHhC--CCHHHHHHHHHHHHhcCCC------ccchHHHHHHH
Confidence 3444444 6778889999999997665 88999999998865 5778999999999853111 00011111222
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhhcccccc-CCccchHHHHHhcCC-CCCcHHHHHHHHhhccccc-cccc---c-
Q 002041 88 NTLLKKFHKGPPKVRTQISIAVAALAVHISAEDW-GGGGIVNWLRDEMNS-HPEFVPGFLELLTVLPEEV-FNYK---I- 160 (976)
Q Consensus 88 l~~l~~~~~~~~~v~~kL~~~La~l~~~~~~~~W-~~~~~~~~l~~~l~~-~~~~~~~~L~~L~~l~EE~-~~~~---~- 160 (976)
..++.+ .....||...+.+|+.+.... ..| +. .+..+...+.. ++........-|..+..+- ...- +
T Consensus 96 ~~l~~~--D~d~~VR~~A~~aLG~~~~~~--~~~~~~--a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~ 169 (280)
T PRK09687 96 NNLALE--DKSACVRASAINATGHRCKKN--PLYSPK--IVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLK 169 (280)
T ss_pred HHHHhc--CCCHHHHHHHHHHHhcccccc--cccchH--HHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhc
Confidence 222222 245678888888887663322 134 22 33333332221 1111122222222111100 0000 0
Q ss_pred cCChhHHHHHHHHHHH---hHHHHHHHHHHhhhhh--HHHHHHHHHHHHhhhccCCCCCcccccchhHHHHHhcCCCcch
Q 002041 161 AARPERRRQFEKELTS---QMEVALSTLTACLHIN--ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEIL 235 (976)
Q Consensus 161 ~~~~~~r~~l~~~l~~---~~~~vl~~l~~~l~~~--~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~~~~~L~~~~~ 235 (976)
+-...-|..--..|.. ..+.+.+.|...+.++ +++..++..+..+ + ...-++.+++.|+++..
T Consensus 170 d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~---~---------~~~av~~Li~~L~~~~~ 237 (280)
T PRK09687 170 DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALR---K---------DKRVLSVLIKELKKGTV 237 (280)
T ss_pred CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHcc---C---------ChhHHHHHHHHHcCCch
Confidence 0011222222233332 2455666666666653 5777776666532 1 12456667777777777
Q ss_pred HHHHHHHHHHHh
Q 002041 236 SEASVNVISELI 247 (976)
Q Consensus 236 ~~~a~~~l~~ii 247 (976)
+..+++++.++-
T Consensus 238 ~~~a~~ALg~ig 249 (280)
T PRK09687 238 GDLIIEAAGELG 249 (280)
T ss_pred HHHHHHHHHhcC
Confidence 666666655554
No 74
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=82.85 E-value=1e+02 Score=36.06 Aligned_cols=17 Identities=12% Similarity=-0.007 Sum_probs=9.4
Q ss_pred CCHHHHHHHHHHHHHHH
Q 002041 690 WDMRTMESLCRACKYAV 706 (976)
Q Consensus 690 ~~~~v~e~~~~~~~~~~ 706 (976)
.|+.++|++..++..-+
T Consensus 145 ~de~~Re~~lkFl~~kl 161 (556)
T PF05918_consen 145 GDEQVRERALKFLREKL 161 (556)
T ss_dssp S-HHHHHHHHHHHHHHG
T ss_pred CchHHHHHHHHHHHHHH
Confidence 45566777666665433
No 75
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.84 E-value=1.1e+02 Score=36.45 Aligned_cols=163 Identities=15% Similarity=0.238 Sum_probs=85.7
Q ss_pred HHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCC
Q 002041 315 MLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDY 394 (976)
Q Consensus 315 ~~ll~~lL~~~~~~~~~vs~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~d~ 394 (976)
+.++--+|..++.||.++.+-++.+-.++.+.-. +.++++.+-+.+.--.+
T Consensus 316 ~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN----------------------------vediv~~Lkke~~kT~~- 366 (948)
T KOG1058|consen 316 QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN----------------------------VEDIVQFLKKEVMKTHN- 366 (948)
T ss_pred HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc----------------------------HHHHHHHHHHHHHhccc-
Confidence 3455556788889999999999999776654210 11112222111111111
Q ss_pred CCCChhhhHHhHhhhhcccccCCccchhhhhhhhhhhHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhHHH
Q 002041 395 QDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAAL 474 (976)
Q Consensus 395 ~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~L 474 (976)
+|.++=..||+- +-.++.+|.--.. + +-..+++.+-+.+.. .+ -+++.
T Consensus 367 -----~e~d~~~~yRql-----------------Liktih~cav~Fp-~-~aatvV~~ll~fisD----~N----~~aas 414 (948)
T KOG1058|consen 367 -----EESDDNGKYRQL-----------------LIKTIHACAVKFP-E-VAATVVSLLLDFISD----SN----EAAAS 414 (948)
T ss_pred -----cccccchHHHHH-----------------HHHHHHHHhhcCh-H-HHHHHHHHHHHHhcc----CC----HHHHH
Confidence 122344467776 6666665543322 3 333344444444321 11 24555
Q ss_pred HHHHHhhcccCc---ccccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCC
Q 002041 475 FCIRAISTYVSV---VEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST 546 (976)
Q Consensus 475 ~~l~~i~e~~~~---~~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~ 546 (976)
..+.-+.|.+.. -....+..+++.++++. .+.+...++|.+|.|++=... +..++..+-+.+++
T Consensus 415 ~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~ir-S~ki~rgalwi~GeYce~~~~-------i~~~~k~i~~slGE 481 (948)
T KOG1058|consen 415 DVLMFVREAIEKFPNLRASIIEKLLETFPQIR-SSKICRGALWILGEYCEGLSE-------IQSVIKIIRQSLGE 481 (948)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHhhhhhc-ccccchhHHHHHHHHHhhhHH-------HHHHHHHHHHhccc
Confidence 555555554432 22345566666665554 467788999999999863331 33455555555553
No 76
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=82.29 E-value=12 Score=36.80 Aligned_cols=89 Identities=17% Similarity=0.115 Sum_probs=65.7
Q ss_pred HHHHHHHHcccCCCh-HHHHHHHHHHHHHHHH-hhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcC
Q 002041 534 ASVLSILTSGMSTSE-DTAAAAALAFRHICDD-CRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 611 (976)
Q Consensus 534 ~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~-~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~ 611 (976)
...|..++.|+.+.+ ..+--|-..+..+.+. ....+.|.+++++--+...++. -+.+.....++++-.++.+.
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~t-----r~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNT-----RDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHhh
Confidence 456667778887643 4677888889999988 7788999999999999999975 35677777888887775443
Q ss_pred Ch--HHHHHHHHHhhhHH
Q 002041 612 PQ--VDAKKALEMLCLPV 627 (976)
Q Consensus 612 p~--~~~~~~l~~ll~p~ 627 (976)
+- +...+|+.+++.++
T Consensus 112 ~~vG~aLvPyyrqLLp~l 129 (183)
T PF10274_consen 112 DMVGEALVPYYRQLLPVL 129 (183)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 21 34457777766554
No 77
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.93 E-value=1.1e+02 Score=36.89 Aligned_cols=70 Identities=9% Similarity=0.014 Sum_probs=39.5
Q ss_pred hhHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhhhhh---hhHHHHHH
Q 002041 651 TVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMG---ITIGAILE 722 (976)
Q Consensus 651 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~v~e~~~~~~~~~~~~~~~~~~---~~l~~l~~ 722 (976)
...|+.+++++...+. -+.+...++...+..+=+....++-+.-++...+++.+.++|.... |++-++++
T Consensus 590 ~~VL~~ls~lI~r~~e--~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIe 662 (978)
T KOG1993|consen 590 TSVLNLLSTLIERVSE--HIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIE 662 (978)
T ss_pred HHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHH
Confidence 3467888888776542 1112333333333333333334445666788888888888887554 44444443
No 78
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=81.25 E-value=90 Score=34.23 Aligned_cols=231 Identities=12% Similarity=0.071 Sum_probs=110.6
Q ss_pred HHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCCh-HHHHHHHHHHHHHHHHhhhhhh---cCHHHHHHHH--HH
Q 002041 509 LQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLC---GYLDGLYNVY--RT 582 (976)
Q Consensus 509 ~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~L~---~~l~~ll~~~--~~ 582 (976)
.+-+..+|++|. .+.|+ +-..++..=+....+.+ .++.+|.+-|-.||++ +.+. +.+.++++.. ..
T Consensus 41 k~lasq~ip~~f---k~fp~---la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~--d~~~rv~d~l~qLLnk~sl~~ 112 (460)
T KOG2213|consen 41 KRLASQFIPRFF---KHFPS---LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG--DALSRVNDVLVQLLNKASLTG 112 (460)
T ss_pred HHHHHHHHHHHH---hhCch---hhhHHHHhhhccccccchhhHHHHHhccchhccC--chhhhhHHHHHHHHHHHHHHH
Confidence 445556666653 44454 45555555444444433 4899999999999987 2222 2233333210 11
Q ss_pred HhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhh
Q 002041 583 AVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFR 662 (976)
Q Consensus 583 ~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 662 (976)
++.. ....+...|++++.-|..=+-.++.+-..+-++. .+++.+...+.... .......++-++.+-
T Consensus 113 Lf~~--~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~---~iv~eikkal~dVt-------geef~lfm~~L~~lk- 179 (460)
T KOG2213|consen 113 LFGQ--IEVGDEQIREKVLKFIRTKLITLKGEVLTKEVER---HIVDEIKKALEDVT-------GEEFTLFMDILASLK- 179 (460)
T ss_pred HHhh--hhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHH---HHHHHHHHHHHhcc-------HHHHHHHHHHHHhhh-
Confidence 1111 1112455677777777665666666544433332 23334444444321 123444555555432
Q ss_pred hcCC--cccHHHHHHHHhHHHHHHHHh--hc-CCHHHHHHHHHHHHHHHHHhh--hhhhhhHHHHHHHHHHH-HhhcCCc
Q 002041 663 YVNH--PEAVADAIQRLWPIFKAIFDI--RA-WDMRTMESLCRACKYAVRTSK--RFMGITIGAILEEIQGL-YQQHQQP 734 (976)
Q Consensus 663 ~~~~--~~~~~~~~~~~~~~l~~ll~~--~~-~~~~v~e~~~~~~~~~~~~~~--~~~~~~l~~l~~~l~~~-~~~~~~~ 734 (976)
++++ ++. -++++....+..-.. |. .|.+.+++...|+..++-.+. ....-|+..+...++-. |...+..
T Consensus 180 ~~~~k~~~a---~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~ 256 (460)
T KOG2213|consen 180 SLQTKAGEA---RLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEE 256 (460)
T ss_pred cccCCCCHH---HHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccccccchHH
Confidence 2222 222 123333333333222 43 578899999888887665432 12222333333332221 2222222
Q ss_pred cHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 002041 735 CFLYLSSEVIKIFGSDPSCASYLHNLIEALF 765 (976)
Q Consensus 735 ~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~ 765 (976)
-=|+++..+.+..... ..+...+++..++
T Consensus 257 rkL~lLK~lAEMss~t--taq~a~q~Lpsi~ 285 (460)
T KOG2213|consen 257 RKLDLLKALAEMSSYT--TAQAARQMLPSIV 285 (460)
T ss_pred HHHHHHHHHHHhCccc--hHHHHHHHHHHHH
Confidence 3467777776654432 3344445554444
No 79
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=80.12 E-value=93 Score=33.66 Aligned_cols=128 Identities=14% Similarity=0.127 Sum_probs=78.9
Q ss_pred HHHHHHHhhcccCcc--cccchHHHhhhc--cCCC-CcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCC
Q 002041 473 ALFCIRAISTYVSVV--EAEVMPQVMALL--PKLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS 547 (976)
Q Consensus 473 ~L~~l~~i~e~~~~~--~~~~l~~l~~~l--~~~~-~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~ 547 (976)
||...+.+-+.+... .+..+..+++.+ |.+. .++.+|..++..+|-|+-.-.+-- .++++-++..+.. ++
T Consensus 3 cL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a--~~~l~l~~~~~~~---~~ 77 (298)
T PF12719_consen 3 CLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELA--KEHLPLFLQALQK---DD 77 (298)
T ss_pred HHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH--HHHHHHHHHHHHh---CC
Confidence 344444555554422 223455777654 4554 378999999999999875333211 1244444443322 23
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhh-c--------CHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhc
Q 002041 548 EDTAAAAALAFRHICDDCRKKLC-G--------YLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (976)
Q Consensus 548 ~~v~~~A~~al~~l~~~~~~~L~-~--------~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (976)
..++..|..++..+...-+.... . ....+++.+.+.+.. .+.+.+..+.||++.+.-.
T Consensus 78 ~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-----~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 78 EEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDS-----ENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHhc
Confidence 34999999999888876554332 1 234677777777754 2567899999999987655
No 80
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.43 E-value=1.6e+02 Score=35.98 Aligned_cols=145 Identities=8% Similarity=0.088 Sum_probs=79.3
Q ss_pred CCCh--HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 002041 545 STSE--DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEM 622 (976)
Q Consensus 545 ~~~~--~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ 622 (976)
++|. ....++++.|..+.+..+....++++.+++.....--+ ....+-.....+.||+...-+..+- .
T Consensus 476 ~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S----~~n~ql~~Tss~~igs~s~~l~e~P--~---- 545 (982)
T KOG2022|consen 476 EDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLS----APNPQLLSTSSDLIGSLSNWLGEHP--M---- 545 (982)
T ss_pred CCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccc----cCChhHHHHHHHHHHHHHHHHhcCC--c----
Confidence 3554 25667888888888888777777877777665443211 1223333344445554444433221 1
Q ss_pred hhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcCCHHHHHHHHHHH
Q 002041 623 LCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRAC 702 (976)
Q Consensus 623 ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~v~e~~~~~~ 702 (976)
.++|.+.-+-+.+.+. +.....+..+.++.+.+. ....++...++.+...++.+-........++.+.+
T Consensus 546 ~ln~sl~~L~~~Lh~s---------k~s~q~i~tl~tlC~~C~--~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sI 614 (982)
T KOG2022|consen 546 YLNPSLPLLFQGLHNS---------KESEQAISTLKTLCETCP--ESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSI 614 (982)
T ss_pred ccCchHHHHHHHhcCc---------hHHHHHHHHHHHHHHhhh--hhCchHHHHHHHHHHHHhcccccCchHHHHHHHHH
Confidence 2333333333333221 122345566777777664 22334446677777777665433445667788888
Q ss_pred HHHHHHhh
Q 002041 703 KYAVRTSK 710 (976)
Q Consensus 703 ~~~~~~~~ 710 (976)
++.+....
T Consensus 615 Gyvls~~~ 622 (982)
T KOG2022|consen 615 GYVLSRLK 622 (982)
T ss_pred HHHHHhcc
Confidence 87776654
No 81
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=78.92 E-value=94 Score=36.09 Aligned_cols=169 Identities=12% Similarity=0.159 Sum_probs=85.1
Q ss_pred HHHHHHhHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCCccHHHHHHHHHHHhCCCC
Q 002041 672 DAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDP 751 (976)
Q Consensus 672 ~~~~~~~~~l~~ll~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~~~~ 751 (976)
..+.++|-....++.. ....+++..++.++..++..-+......=-.....+...-.....+..|..+..+.+ -|++=
T Consensus 24 ~~i~~iW~~~~DLi~~-~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~d~~~~l~aL~~LT~-~Grdi 101 (464)
T PF11864_consen 24 SSIEEIWYAAKDLIDP-NQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDDDFDLRLEALIALTD-NGRDI 101 (464)
T ss_pred hHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHc-CCcCc
Confidence 3446788888888865 334577888888888777653221111001111111110000011233444444443 24431
Q ss_pred c-----chHHHHHHHHHHHHHHHh---hhcC-----ccc---CCCCCccHHHHHHHHHHHHhhCCCcccCcCChHHHHHH
Q 002041 752 S-----CASYLHNLIEALFKRTTC---LLTS-----IEE---FTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDC 815 (976)
Q Consensus 752 ~-----~~~~l~~~~~~l~~~~~~---~l~~-----~~~---~~~~pD~~~~~f~l~~~~~~~~p~~~~~~~~l~~~~~~ 815 (976)
. ..+.+...+....+.+-. .... ..+ .+.......++|.|+..+++++...+- .+.+..+++.
T Consensus 102 ~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~-e~~i~~lv~~ 180 (464)
T PF11864_consen 102 DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLD-EDEISSLVDQ 180 (464)
T ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHH
Confidence 1 222333322222211000 0000 001 112344788999999999998877543 3345555544
Q ss_pred HH-HhcccCCchhHHHHHHHHHHhhcccC
Q 002041 816 SM-IGITVQHREASNSILTFLSDIFDLAK 843 (976)
Q Consensus 816 ~~-~~l~~~~~~~~~~~~~fl~~l~~~~~ 843 (976)
++ .|......+..+++++++..++..+.
T Consensus 181 i~~iC~~Ts~~~di~~~L~vldaii~y~~ 209 (464)
T PF11864_consen 181 ICTICKSTSSEDDIEACLSVLDAIITYGD 209 (464)
T ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHcCc
Confidence 32 24455566677999999999998764
No 82
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=77.23 E-value=1.3e+02 Score=33.88 Aligned_cols=173 Identities=14% Similarity=0.113 Sum_probs=97.2
Q ss_pred HHHhcHHHHhhCCCCcchHHHHHHHHHcccCCCh--HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCC
Q 002041 515 TIGAYSKWFDAASSDPSILASVLSILTSGMSTSE--DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKV 592 (976)
Q Consensus 515 ~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~--~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l 592 (976)
+-|.|+-|-.+ ...+|..++..+++.+ ..+..|-+.|+++|+.-...|..+.+.-+..+.+.... -
T Consensus 316 ~e~sfsvWeq~-------f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~d-----s 383 (516)
T KOG2956|consen 316 CEGSFSVWEQH-------FAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKD-----S 383 (516)
T ss_pred HccchhHHHHH-------HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhC-----C
Confidence 34556667653 3444555555555532 25777888888888877777777766544443333321 2
Q ss_pred CHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCCcccHHH
Q 002041 593 SAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVAD 672 (976)
Q Consensus 593 ~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 672 (976)
..+.....-|.+..++++..+...... +.|++ ..++ .++. ...|++++.+|..++. +....
T Consensus 384 ~~~v~~~Aeed~~~~las~~P~~~I~~----i~~~I-------lt~D------~~~~-~~~iKm~Tkl~e~l~~-EeL~~ 444 (516)
T KOG2956|consen 384 QDEVMRVAEEDCLTTLASHLPLQCIVN----ISPLI-------LTAD------EPRA-VAVIKMLTKLFERLSA-EELLN 444 (516)
T ss_pred chhHHHHHHHHHHHHHHhhCchhHHHH----HhhHH-------hcCc------chHH-HHHHHHHHHHHhhcCH-HHHHH
Confidence 233344455555555555433322211 22222 2111 1232 3578999999998753 22333
Q ss_pred HHHHHhHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHhh-hhhhhhHHHHH
Q 002041 673 AIQRLWPIFKAIFDIRAW-DMRTMESLCRACKYAVRTSK-RFMGITIGAIL 721 (976)
Q Consensus 673 ~~~~~~~~l~~ll~~~~~-~~~v~e~~~~~~~~~~~~~~-~~~~~~l~~l~ 721 (976)
++..+.|.+ ++.|.+ +..|+..+..|+..++...| ..+.|++.++-
T Consensus 445 ll~diaP~~---iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt 492 (516)
T KOG2956|consen 445 LLPDIAPCV---IQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLT 492 (516)
T ss_pred hhhhhhhHH---HHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhcc
Confidence 334444443 455554 44677777888888888888 67888877653
No 83
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=75.89 E-value=8.8 Score=40.65 Aligned_cols=95 Identities=16% Similarity=0.181 Sum_probs=65.3
Q ss_pred chhhHHHHHHHHhhcccCcc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCC-cchHHHHHHHHH
Q 002041 468 RPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSD-PSILASVLSILT 541 (976)
Q Consensus 468 ~~~Ea~L~~l~~i~e~~~~~-----~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~-~~~l~~~l~~l~ 541 (976)
.-+|-+.|+++.|+..-+.- ....+..++..+.+-..|..+.+++.|+++.+++ .++|.- -+.+..+++.|.
T Consensus 172 ~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcR--GknP~P~w~~isqalpiL~ 249 (526)
T COG5064 172 DVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCR--GKNPPPDWSNISQALPILA 249 (526)
T ss_pred HHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhC--CCCCCCchHHHHHHHHHHH
Confidence 34688999999887543221 1244566676665444588899999999999876 344431 146677777776
Q ss_pred cccC--CChHHHHHHHHHHHHHHHHh
Q 002041 542 SGMS--TSEDTAAAAALAFRHICDDC 565 (976)
Q Consensus 542 ~~l~--~~~~v~~~A~~al~~l~~~~ 565 (976)
+-+. +++ +..-||.|+..+.+..
T Consensus 250 KLiys~D~e-vlvDA~WAiSYlsDg~ 274 (526)
T COG5064 250 KLIYSRDPE-VLVDACWAISYLSDGP 274 (526)
T ss_pred HHHhhcCHH-HHHHHHHHHHHhccCc
Confidence 6553 456 8999999999998753
No 84
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=75.20 E-value=23 Score=29.81 Aligned_cols=87 Identities=22% Similarity=0.192 Sum_probs=58.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHH
Q 002041 8 KEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSL 87 (976)
Q Consensus 8 ~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~~~lr~~L 87 (976)
...++.+-..+|+..|..|-..|.++. ++++-.....++. +.++.||..|+..|... . + ......|
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l~--d~~~~vr~~a~~aL~~i-~------~----~~~~~~L 67 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG-DPEAIPALIELLK--DEDPMVRRAAARALGRI-G------D----PEAIPAL 67 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT-HHHHHHHHHHHHT--SSSHHHHHHHHHHHHCC-H------H----HHTHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHc--CCCHHHHHHHHHHHHHh-C------C----HHHHHHH
Confidence 345555657889999999999998774 7788888888885 46788999999999832 1 1 1122333
Q ss_pred HHHHHHhcCCChHHHHHHHHHHH
Q 002041 88 NTLLKKFHKGPPKVRTQISIAVA 110 (976)
Q Consensus 88 l~~l~~~~~~~~~v~~kL~~~La 110 (976)
.+.+.+ .....||.....+|+
T Consensus 68 ~~~l~~--~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 68 IKLLQD--DDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHTC---SSHHHHHHHHHHHH
T ss_pred HHHHcC--CCcHHHHHHHHhhcC
Confidence 333333 234566776666654
No 85
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=74.90 E-value=80 Score=33.82 Aligned_cols=87 Identities=17% Similarity=0.237 Sum_probs=63.0
Q ss_pred hHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhh--hhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHh
Q 002041 532 ILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRK--KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVIT 609 (976)
Q Consensus 532 ~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~~--~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~ 609 (976)
....++..|+.++.++..++...-.++..+|.+|+. .+.|.++.+=+.+.. ++.+.+++..++.++..++.
T Consensus 104 l~L~vLsnLfn~~d~~~~aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~~~lke-------w~~~vedqrel~r~v~~al~ 176 (378)
T KOG2753|consen 104 LRLQVLSNLFNGVDKPTPARYQVYMSLVTLAASCKLIEYIVPNLKQLDDWLKE-------WNISVEDQRELLRAVHKALK 176 (378)
T ss_pred cHHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcceeeeecccHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHH
Confidence 667888889999999877899999999999999984 455666655555433 46889999999999988876
Q ss_pred cCC-hHHHHHHHHHhhh
Q 002041 610 ELP-QVDAKKALEMLCL 625 (976)
Q Consensus 610 ~~p-~~~~~~~l~~ll~ 625 (976)
.-. -++..+.+..++.
T Consensus 177 ~~k~~~~s~kvmt~lLg 193 (378)
T KOG2753|consen 177 DNKSVDESSKVMTELLG 193 (378)
T ss_pred hcchhhhHHHHHHHHHH
Confidence 643 2233344443333
No 86
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=74.60 E-value=2.4e+02 Score=35.45 Aligned_cols=243 Identities=14% Similarity=0.164 Sum_probs=118.9
Q ss_pred hHHHhhhcc-CCC-CcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHccc---CCChHHHHHHHHHHHHHHHHhh
Q 002041 492 MPQVMALLP-KLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGM---STSEDTAAAAALAFRHICDDCR 566 (976)
Q Consensus 492 l~~l~~~l~-~~~-~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l---~~~~~v~~~A~~al~~l~~~~~ 566 (976)
+..++.+|. .+. ....||.+++.-+|+.+.=+. + .+...++..++..+ +.+. ...-||.+|..++..
T Consensus 339 vE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~---~Lad~vi~svid~~~p~e~~~-aWHgacLaLAELA~r-- 410 (1133)
T KOG1943|consen 339 VEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--P---ELADQVIGSVIDLFNPAEDDS-AWHGACLALAELALR-- 410 (1133)
T ss_pred HHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--H---HHHHHHHHHHHHhcCcCCchh-HHHHHHHHHHHHHhc--
Confidence 334444443 343 357899999999999865333 2 25555665554422 2233 677888888888763
Q ss_pred hhhhc-CHHHHHHHHHHHhhcc---CCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCC--
Q 002041 567 KKLCG-YLDGLYNVYRTAVNGE---GSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPE-- 640 (976)
Q Consensus 567 ~~L~~-~l~~ll~~~~~~~~~~---~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~-- 640 (976)
.-+.| -++.++..+...+.-. +....+...|....-.+-++..+-.+..++++++++..-++.. .+.+....
T Consensus 411 GlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~--AlFDrevncR 488 (1133)
T KOG1943|consen 411 GLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIV--ALFDREVNCR 488 (1133)
T ss_pred CCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHH--HhcCchhhHh
Confidence 22222 2344444444433211 0111234445444444555555555556666666665555321 11111000
Q ss_pred ----------cccc-cCcch--hhhHHHHHH-----HHhhhcCCcccHHHHHHHHhHHHHHHHHh--hcCCHHHHHHHHH
Q 002041 641 ----------ILQK-KHPRD--LTVHIDRFA-----YIFRYVNHPEAVADAIQRLWPIFKAIFDI--RAWDMRTMESLCR 700 (976)
Q Consensus 641 ----------~~~~-~~~~~--~~~~l~~l~-----~~~~~~~~~~~~~~~~~~~~~~l~~ll~~--~~~~~~v~e~~~~ 700 (976)
.+.+ +-+.+ ++..++-.+ .++..+ +.++..+-.=.-|++..++++ ..+|+.+.|..-.
T Consensus 489 RAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l--~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~ 566 (1133)
T KOG1943|consen 489 RAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDL--CVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAY 566 (1133)
T ss_pred HHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHH--hHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHH
Confidence 0000 00010 111111111 111110 112222222244677777765 5678999998888
Q ss_pred HHHHHHHHhhhhhh-hhHHHHHHHHHHHHhhcCCccHHHHHHHHHHH
Q 002041 701 ACKYAVRTSKRFMG-ITIGAILEEIQGLYQQHQQPCFLYLSSEVIKI 746 (976)
Q Consensus 701 ~~~~~~~~~~~~~~-~~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~ 746 (976)
++++....-.+++. ..+|++++.....=-..++++++.+.+.+-..
T Consensus 567 aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~ 613 (1133)
T KOG1943|consen 567 ALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGAL 613 (1133)
T ss_pred HHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHh
Confidence 88885544444444 56777777544332234567777665544443
No 87
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=74.14 E-value=2e+02 Score=34.49 Aligned_cols=83 Identities=14% Similarity=0.279 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHH
Q 002041 548 EDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPV 627 (976)
Q Consensus 548 ~~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~ 627 (976)
+.++.+.-..+.+++.-.+..+.|+++.+++.+.+- .+..+....+--+.-+|.... ....+.+++++.|+
T Consensus 711 E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s--------~d~kEmvdfl~flsQLihkfk-~~~~~ilnqmlppl 781 (980)
T KOG2021|consen 711 ENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSS--------TDLKEMVDFLGFLSQLIHKFK-TDCYQILNQMLPPL 781 (980)
T ss_pred chhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhc--------CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 347888888899999999999999999988776442 234455555555556666654 56679999999999
Q ss_pred HHHHHHHHhcCC
Q 002041 628 VTPLQEIINQGP 639 (976)
Q Consensus 628 ~~~l~~~~~~~~ 639 (976)
+.++.+++....
T Consensus 782 l~rIfsvi~r~a 793 (980)
T KOG2021|consen 782 LNRIFSVIERIA 793 (980)
T ss_pred HHHHHHHhcccC
Confidence 999999988543
No 88
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=73.91 E-value=1.2e+02 Score=31.82 Aligned_cols=133 Identities=14% Similarity=0.142 Sum_probs=79.8
Q ss_pred CCcchhhHHHHHHHHhhcccCccc-----ccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHH
Q 002041 465 NEWRPAEAALFCIRAISTYVSVVE-----AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSI 539 (976)
Q Consensus 465 ~~w~~~Ea~L~~l~~i~e~~~~~~-----~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~ 539 (976)
.+-.-.|.++++++..+. .+... ...++-+.+.+.. | +|.++..++.++...+.-.........+++.+..-
T Consensus 25 ~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~-p-~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~ 101 (254)
T PF04826_consen 25 EDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLND-P-NPSVREKALNALNNLSVNDENQEQIKMYIPQVCEE 101 (254)
T ss_pred CChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCC-C-ChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH
Confidence 455567889999887543 23221 2334444444443 3 78999999999987765333222112366666665
Q ss_pred HHcccCCChHHHHHHHHHHHHHHHH--hhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhc
Q 002041 540 LTSGMSTSEDTAAAAALAFRHICDD--CRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (976)
Q Consensus 540 l~~~l~~~~~v~~~A~~al~~l~~~--~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (976)
+.+.--+.. ++.++-++|.+++-. ....+..+++.++.. +..+ +...+..++..+..+...
T Consensus 102 ~~s~~lns~-~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~L----L~~G-----~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 102 TVSSPLNSE-VQLAGLRLLTNLTVTNDYHHMLANYIPDLLSL----LSSG-----SEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HhcCCCCCH-HHHHHHHHHHccCCCcchhhhHHhhHHHHHHH----HHcC-----ChHHHHHHHHHHHHhccC
Confidence 554323445 899999999998643 334456777776643 3332 345677777777655554
No 89
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=73.87 E-value=23 Score=34.53 Aligned_cols=128 Identities=19% Similarity=0.230 Sum_probs=82.3
Q ss_pred HHHHHHHHHhhhcCcccCCCCCccHHHHHHHHHHHHhhCC-CcccC--cCChHHHHHHHHHhcccCC-chhHHHHHHHHH
Q 002041 761 IEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCP-QLFIP--SSVFPSLVDCSMIGITVQH-REASNSILTFLS 836 (976)
Q Consensus 761 ~~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p-~~~~~--~~~l~~~~~~~~~~l~~~~-~~~~~~~~~fl~ 836 (976)
+..+..++.+++++ .+++-+-.-..++...++.++ ..+.. +..+..++.. ++.++ +...++++..+.
T Consensus 23 l~~l~~ri~~LL~s-----~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~----L~~~~~~~~~~~ai~~L~ 93 (165)
T PF08167_consen 23 LHKLVTRINSLLQS-----KSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSI----LEKPDPPSVLEAAIITLT 93 (165)
T ss_pred HHHHHHHHHHHhCC-----CChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----HcCCCCHHHHHHHHHHHH
Confidence 34445566666762 345555666778888888884 44433 2344444443 44343 445678888888
Q ss_pred HhhcccCCCCchhhHHHHHHHHhhchHHHHHHHHHHcccCCCCCCcccHHHHHHHHHHHhhHHHHHHHH
Q 002041 837 DIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAK 905 (976)
Q Consensus 837 ~l~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~~~~~~~~~~~~L~~l~~~~~~~~~~wl~ 905 (976)
.++....+ -++ ..+++..++.+.++..++.-+.. ....+.+-+.|.++...||.-++.+-.
T Consensus 94 ~l~~~~~~--~p~---l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~ptt~rp~~~ 154 (165)
T PF08167_consen 94 RLFDLIRG--KPT---LTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHPTTFRPFAN 154 (165)
T ss_pred HHHHHhcC--CCc---hHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCCccccchHH
Confidence 88876432 222 36677778888888888876543 466677888888888888876665443
No 90
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=72.65 E-value=2e+02 Score=33.66 Aligned_cols=183 Identities=10% Similarity=0.101 Sum_probs=93.5
Q ss_pred hhhHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcccccchHHHhhhccCC-C-CcH
Q 002041 429 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKL-P-QQP 506 (976)
Q Consensus 429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~~~-~-~~~ 506 (976)
.+..+.-....+|..+++. .+...+ + +-.+|+-+..++.+...|++-..-+--.++..++..+... . .|.
T Consensus 301 t~ra~~vva~algv~~llp----fl~a~c---~-SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~ 372 (975)
T COG5181 301 TGRAVGVVADALGVEELLP----FLEALC---G-SRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSR 372 (975)
T ss_pred HHHHHHHHHHhhCcHHHHH----HHHHHh---c-CccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccce
Confidence 3444444555667665444 333322 1 1458999999999999999877655445666677766532 2 356
Q ss_pred HHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhhh--------hhcCHHHHHH
Q 002041 507 QLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKK--------LCGYLDGLYN 578 (976)
Q Consensus 507 ~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~~~--------L~~~l~~ll~ 578 (976)
.||.-+...++..++.. .|.....+..++.-+-+|. +.+-...|..|-+..+.. ...+--..+.
T Consensus 373 ~vRi~tA~alS~lae~~--~Pygie~fd~vl~pLw~g~------~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~ 444 (975)
T COG5181 373 FVRIDTANALSYLAELV--GPYGIEQFDEVLCPLWEGA------SQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHME 444 (975)
T ss_pred eeeehhHhHHHHHHHhc--CCcchHHHHHHHHHHHHHH------HhcCCchHHHHHHHhccccccCChHhhhhhHHHHHH
Confidence 67766666666554422 2432123444444443433 333344455555544321 1123344666
Q ss_pred HHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHH
Q 002041 579 VYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQE 633 (976)
Q Consensus 579 ~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~ 633 (976)
++...+++++. .+ .--..+++.+|.-+... ....+.+++..-+++..+.
T Consensus 445 iv~ref~spde-em--kk~~l~v~~~C~~v~~~---tp~~lr~~v~pefF~~fw~ 493 (975)
T COG5181 445 IVFREFKSPDE-EM--KKDLLVVERICDKVGTD---TPWKLRDQVSPEFFSPFWR 493 (975)
T ss_pred HHHHHhCCchh-hc--chhHHHHHHHHhccCCC---CHHHHHHhhcHHhhchHHH
Confidence 66666654321 11 11234555555444443 3334445544444444443
No 91
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=72.38 E-value=20 Score=34.79 Aligned_cols=77 Identities=12% Similarity=0.124 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhh
Q 002041 506 PQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN 585 (976)
Q Consensus 506 ~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~ 585 (976)
-.+|+++.+++...-+-...+- .+..++..+..|+.+..+++.-+..-+.+++..+...+.+.++.+.+.+...++
T Consensus 41 LelRK~ayE~lytlLd~~~~~~----~~~~~~~~v~~GL~D~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRI----DISEFLDRVEAGLKDEHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS-----HHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhC----CHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 3699999999876654222221 466778889999998767999999999999999998888888888888888876
Q ss_pred c
Q 002041 586 G 586 (976)
Q Consensus 586 ~ 586 (976)
.
T Consensus 117 ~ 117 (169)
T PF08623_consen 117 K 117 (169)
T ss_dssp -
T ss_pred c
Confidence 4
No 92
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=71.78 E-value=38 Score=33.40 Aligned_cols=54 Identities=13% Similarity=0.225 Sum_probs=44.3
Q ss_pred cHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCCh-HHHHHHHHHHHHHHHH
Q 002041 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDD 564 (976)
Q Consensus 505 ~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~ 564 (976)
||.+|.+++.++|..+ .++|. .+.+.++.+..++.++. .|+..|...+.++...
T Consensus 1 ~~~vR~n~i~~l~DL~---~r~~~---~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~ 55 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLC---IRYPN---LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE 55 (178)
T ss_pred CHHHHHHHHHHHHHHH---HhCcH---HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc
Confidence 6889999999988654 56676 88888999999998864 4999999999998764
No 93
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=71.26 E-value=12 Score=31.64 Aligned_cols=56 Identities=25% Similarity=0.181 Sum_probs=44.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCchHHHHHHHHHH
Q 002041 7 VKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTL 64 (976)
Q Consensus 7 v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~v~ffaa~~L 64 (976)
+...+..+..++|+..|.+|-..|.++. +++++.....++.+ +.+..+|..|+..|
T Consensus 32 ~~~~L~~~l~d~~~~vr~~a~~aL~~i~-~~~~~~~L~~~l~~-~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 32 AIPALIELLKDEDPMVRRAAARALGRIG-DPEAIPALIKLLQD-DDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCH-HHHTHHHHHHHHTC--SSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHcC-CCcHHHHHHHHhhc
Confidence 4444555557889999999999999986 79999999999986 45666898888765
No 94
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.68 E-value=2.5e+02 Score=34.30 Aligned_cols=129 Identities=11% Similarity=0.143 Sum_probs=76.3
Q ss_pred HHHHHHhhcccCcccccchHHHhhhccC---CC---CcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCC
Q 002041 474 LFCIRAISTYVSVVEAEVMPQVMALLPK---LP---QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS 547 (976)
Q Consensus 474 L~~l~~i~e~~~~~~~~~l~~l~~~l~~---~~---~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~ 547 (976)
|-++..+..-+....+..+|.+.+.-.+ .+ .--+|..+.+.++-+-.+.+.. |...+++.+.+|+++|
T Consensus 786 LnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~------y~~~Li~tfl~gvrep 859 (982)
T KOG4653|consen 786 LNAIRGVVSLCEVYPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFK------YKAVLINTFLSGVREP 859 (982)
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHH------HHHHHHHHHHHhcCCc
Confidence 3444433322222345677777774321 11 1124554555454444444443 6778888889999988
Q ss_pred h-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCC
Q 002041 548 E-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 612 (976)
Q Consensus 548 ~-~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p 612 (976)
+ ..+..++..+..+|+..+-.+..++-.....+.++.... -+.-.|...+.-+.....+.+
T Consensus 860 d~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d----~s~~vRRaAv~li~~lL~~tg 921 (982)
T KOG4653|consen 860 DHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTD----GSVLVRRAAVHLLAELLNGTG 921 (982)
T ss_pred hHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccC----CchhhHHHHHHHHHHHHhccc
Confidence 6 467888888999999877666665555555555554331 134456666777766666655
No 95
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.19 E-value=2.4e+02 Score=32.76 Aligned_cols=337 Identities=11% Similarity=0.120 Sum_probs=166.8
Q ss_pred hhhHHHHHHHHhhcccCcc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCC---cchHHHHHHHH
Q 002041 469 PAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSD---PSILASVLSIL 540 (976)
Q Consensus 469 ~~Ea~L~~l~~i~e~~~~~-----~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~---~~~l~~~l~~l 540 (976)
++| +-|++..|+.+-++. ++..+|.++.++.+ +|..|+..+.|.+|..+.--.....+ ...+++++..+
T Consensus 127 q~e-AAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s--~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l 203 (514)
T KOG0166|consen 127 QFE-AAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSS--PSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLL 203 (514)
T ss_pred HHH-HHHHHHHHhcCchhhccccccCCchHHHHHHhcC--CcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHh
Confidence 455 457888887654433 23456666655542 38899999999999876421111100 01455555555
Q ss_pred HcccCCChHHHHHHHHHHHHHHHHhhhhh-hcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHH
Q 002041 541 TSGMSTSEDTAAAAALAFRHICDDCRKKL-CGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKA 619 (976)
Q Consensus 541 ~~~l~~~~~v~~~A~~al~~l~~~~~~~L-~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~ 619 (976)
..... -...+.+..+|.+||+...+.= ...+..++..+..++.. .+.+......=+++++... +++.....
T Consensus 204 ~~~~~--~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~-----~D~~Vl~Da~WAlsyLsdg-~ne~iq~v 275 (514)
T KOG0166|consen 204 NKSDK--LSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHS-----TDEEVLTDACWALSYLTDG-SNEKIQMV 275 (514)
T ss_pred ccccc--hHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHhcC-ChHHHHHH
Confidence 33222 1367788999999998754211 12244455555555542 3455666666677766654 34444333
Q ss_pred HHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcCCHHHHHHHH
Q 002041 620 LEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLC 699 (976)
Q Consensus 620 l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~v~e~~~ 699 (976)
++ ..++.++-.++..... .....+|..++.++.+-. ...-.-.-...+|.+..++..-+.+ .+...+|
T Consensus 276 i~---~gvv~~LV~lL~~~~~-------~v~~PaLRaiGNIvtG~d-~QTq~vi~~~~L~~l~~ll~~s~~~-~ikkEAc 343 (514)
T KOG0166|consen 276 ID---AGVVPRLVDLLGHSSP-------KVVTPALRAIGNIVTGSD-EQTQVVINSGALPVLSNLLSSSPKE-SIKKEAC 343 (514)
T ss_pred HH---ccchHHHHHHHcCCCc-------ccccHHHhhccceeeccH-HHHHHHHhcChHHHHHHHhccCcch-hHHHHHH
Confidence 33 2334445555554321 122446777776544321 1111111145667777777643332 3667777
Q ss_pred HHHHHHHHHhhhh-----hhhhHHHHHHHHHH-HHhhcCCccHHHHHHHHHHHhCCCCcchHHHHHHHHH-HHHHHHhhh
Q 002041 700 RACKYAVRTSKRF-----MGITIGAILEEIQG-LYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEA-LFKRTTCLL 772 (976)
Q Consensus 700 ~~~~~~~~~~~~~-----~~~~l~~l~~~l~~-~~~~~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~-l~~~~~~~l 772 (976)
-.+..+...-..+ -..++|.++..+.. .|... ....|.++.+.. |.+ .+.+.-+.+. ++.+...+|
T Consensus 344 W~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~r--KEAawaIsN~ts--~g~---~~qi~yLv~~giI~plcdlL 416 (514)
T KOG0166|consen 344 WTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIR--KEAAWAISNLTS--SGT---PEQIKYLVEQGIIKPLCDLL 416 (514)
T ss_pred HHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHH--HHHHHHHHhhcc--cCC---HHHHHHHHHcCCchhhhhcc
Confidence 7777654322222 12466777766543 23322 234455554443 222 1222222221 112222222
Q ss_pred cCcccCCCCCccHHHHHHHHHHHHhhCCCcccCc-CChHHHHHHH-----HHhcccCCc-hhHHHHHHHHHHhhc
Q 002041 773 TSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPS-SVFPSLVDCS-----MIGITVQHR-EASNSILTFLSDIFD 840 (976)
Q Consensus 773 ~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~~-~~l~~~~~~~-----~~~l~~~~~-~~~~~~~~fl~~l~~ 840 (976)
. -.+++++.-.+.-+..+++.....-... +.+...++-+ +..|+.++. +..+.|.+.+.+.+.
T Consensus 417 ~-----~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~ 486 (514)
T KOG0166|consen 417 T-----CPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFS 486 (514)
T ss_pred c-----CCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 2 2234455555555555554333222111 2222333221 445555444 667888888877764
No 96
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=67.45 E-value=2.6e+02 Score=32.95 Aligned_cols=35 Identities=20% Similarity=0.115 Sum_probs=21.3
Q ss_pred HHHhHHHHHHHH---hh-cCCHHHHHHHHHHHHHHHHHh
Q 002041 675 QRLWPIFKAIFD---IR-AWDMRTMESLCRACKYAVRTS 709 (976)
Q Consensus 675 ~~~~~~l~~ll~---~~-~~~~~v~e~~~~~~~~~~~~~ 709 (976)
+++..++..... .+ ..|.+.++++..|+++++..+
T Consensus 218 qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~f 256 (556)
T PF05918_consen 218 QELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFF 256 (556)
T ss_dssp HHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-
T ss_pred HHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHh
Confidence 455555554332 22 357888999888888876543
No 97
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=67.18 E-value=44 Score=40.67 Aligned_cols=166 Identities=16% Similarity=0.154 Sum_probs=92.2
Q ss_pred HHcccCCChHHHHHHHHHHHHHHHHhhhhhh--cCHHH-----------HHHHHHHHhhccCCCCCCHHhHHHHHHHHHH
Q 002041 540 LTSGMSTSEDTAAAAALAFRHICDDCRKKLC--GYLDG-----------LYNVYRTAVNGEGSLKVSAEDSLHLVEALSM 606 (976)
Q Consensus 540 l~~~l~~~~~v~~~A~~al~~l~~~~~~~L~--~~l~~-----------ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~ 606 (976)
+...+..|+ +...|+++|.-+..+|...+. .|... +...+.+... +.+...+....+++++
T Consensus 820 lld~Ls~~~-~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~-----t~~~~~K~~yl~~Lsh 893 (1030)
T KOG1967|consen 820 LLDLLSGPS-TGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFE-----TAPGSQKHNYLEALSH 893 (1030)
T ss_pred HHHhcCCcc-ccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhc-----cCCccchhHHHHHHHH
Confidence 345566677 899999999999988765443 22222 2222222222 2345678899999999
Q ss_pred HHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCCcccH-HHHHHHHhHHHHHHH
Q 002041 607 VITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAV-ADAIQRLWPIFKAIF 685 (976)
Q Consensus 607 vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~ll 685 (976)
|+..+|-....+-+..++.-+++.+ +-.+ ...-...++++.....-. ++. .....-+.|.+..+-
T Consensus 894 Vl~~vP~~vllp~~~~LlPLLLq~L----s~~D-------~~v~vstl~~i~~~l~~~---~tL~t~~~~Tlvp~lLsls 959 (1030)
T KOG1967|consen 894 VLTNVPKQVLLPQFPMLLPLLLQAL----SMPD-------VIVRVSTLRTIPMLLTES---ETLQTEHLSTLVPYLLSLS 959 (1030)
T ss_pred HHhcCCHHhhccchhhHHHHHHHhc----CCCc-------cchhhhHhhhhhHHHHhc---cccchHHHhHHHHHHHhcC
Confidence 9999997555555555554444332 1111 000123445554443321 121 122344555555544
Q ss_pred HhhcCC-HHHHHHHHHHHHHHHH-HhhhhhhhhHHHHHHHHH
Q 002041 686 DIRAWD-MRTMESLCRACKYAVR-TSKRFMGITIGAILEEIQ 725 (976)
Q Consensus 686 ~~~~~~-~~v~e~~~~~~~~~~~-~~~~~~~~~l~~l~~~l~ 725 (976)
....++ ..|++.+..++....+ .+.....|+-|.++..+.
T Consensus 960 ~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~ 1001 (1030)
T KOG1967|consen 960 SDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALI 1001 (1030)
T ss_pred CCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhh
Confidence 333333 4577888888876666 345566666666655443
No 98
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=66.37 E-value=1.7e+02 Score=34.26 Aligned_cols=164 Identities=12% Similarity=0.103 Sum_probs=92.8
Q ss_pred HHHHhHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCC--ccHHHHHHHHHHHhCCCC
Q 002041 674 IQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQ--PCFLYLSSEVIKIFGSDP 751 (976)
Q Consensus 674 ~~~~~~~l~~ll~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~--~~~L~l~~~li~~~~~~~ 751 (976)
+.+++.+..++++. +.++.++++...-+-+.+.. -|.-.-+...+++++...|...|. ...|.++..+++. |+.+
T Consensus 190 F~qIF~lc~qiLE~-~~~~SLi~ATLesllrfl~w-iPl~yIfeTnIieLv~~~f~s~pd~r~~tl~CLtEi~~L-~~~p 266 (1053)
T COG5101 190 FPQIFGLCKQILEY-SRDESLIEATLESLLRFLEW-IPLDYIFETNIIELVLEHFNSMPDTRVATLSCLTEIVDL-GRHP 266 (1053)
T ss_pred HHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHhh-CchhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhh-ccCc
Confidence 45667777777764 45677777655444433322 122223456788999999988776 5668888887764 6555
Q ss_pred cchHHHHHHHHHHHHHHHhhhcC-c-----------ccCC-CCCccHHHHHHHHHHHHhhCCCcccCcCChHHH---HHH
Q 002041 752 SCASYLHNLIEALFKRTTCLLTS-I-----------EEFT-SRPDVADDCFLLASRCIRYCPQLFIPSSVFPSL---VDC 815 (976)
Q Consensus 752 ~~~~~l~~~~~~l~~~~~~~l~~-~-----------~~~~-~~pD~~~~~f~l~~~~~~~~p~~~~~~~~l~~~---~~~ 815 (976)
.........+...++++...... . .+.+ +.-+-+..+-.|+..+...+-..+-..+..+.+ ..+
T Consensus 267 q~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~s~~~~~~~lLE~~e~~e~llnah~Y 346 (1053)
T COG5101 267 QENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLSSLYEVYISLLEAREMAENLLNAHGY 346 (1053)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHH
Confidence 44544445555555555433221 0 0111 122234444455555555444443332222222 233
Q ss_pred HHHhcccCCchhHHHHHHHHHHhhc
Q 002041 816 SMIGITVQHREASNSILTFLSDIFD 840 (976)
Q Consensus 816 ~~~~l~~~~~~~~~~~~~fl~~l~~ 840 (976)
.+.--...+++..+.++..|.+++.
T Consensus 347 LiqiSrInereiFkt~leyW~klVa 371 (1053)
T COG5101 347 LIQISRINEREIFKTALEYWNKLVA 371 (1053)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHH
Confidence 3444467899999999999999874
No 99
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.04 E-value=3.1e+02 Score=33.32 Aligned_cols=142 Identities=12% Similarity=0.203 Sum_probs=79.9
Q ss_pred HHHHhhcccCccc-ccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCC-hHHHHH
Q 002041 476 CIRAISTYVSVVE-AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAA 553 (976)
Q Consensus 476 ~l~~i~e~~~~~~-~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~-~~v~~~ 553 (976)
||.+++.-++++. .+..|.+-..+.. .+|.+|+-+..+.-++ +...|+ +...++.-..+.+.+. +.|-..
T Consensus 127 AL~alg~i~s~EmardlapeVe~Ll~~--~~~~irKKA~Lca~r~---irK~P~---l~e~f~~~~~~lL~ek~hGVL~~ 198 (866)
T KOG1062|consen 127 ALCALGNICSPEMARDLAPEVERLLQH--RDPYIRKKAALCAVRF---IRKVPD---LVEHFVIAFRKLLCEKHHGVLIA 198 (866)
T ss_pred HHHHhhccCCHHHhHHhhHHHHHHHhC--CCHHHHHHHHHHHHHH---HHcCch---HHHHhhHHHHHHHhhcCCceeee
Confidence 4444444444442 2445555554443 3789999888877654 556676 4555444444444332 236666
Q ss_pred HHHHHHHHHHHhhhh---hhcCHHHHHHHHHHHhhcc--CCCCC----CHHhHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 002041 554 AALAFRHICDDCRKK---LCGYLDGLYNVYRTAVNGE--GSLKV----SAEDSLHLVEALSMVITELPQVDAKKALEMLC 624 (976)
Q Consensus 554 A~~al~~l~~~~~~~---L~~~l~~ll~~~~~~~~~~--~~~~l----~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll 624 (976)
+..-+..+|+...+. .....+.|+..++++..++ ...++ ++--|.+++.-++.+-+. +.+....+..++
T Consensus 199 ~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~--d~daSd~M~DiL 276 (866)
T KOG1062|consen 199 GLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQN--DADASDLMNDIL 276 (866)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCC--CccHHHHHHHHH
Confidence 667778888874433 3356778888888887653 11111 345577777777644444 334445554444
Q ss_pred hHH
Q 002041 625 LPV 627 (976)
Q Consensus 625 ~p~ 627 (976)
..+
T Consensus 277 aqv 279 (866)
T KOG1062|consen 277 AQV 279 (866)
T ss_pred HHH
Confidence 443
No 100
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=65.53 E-value=3e+02 Score=33.09 Aligned_cols=118 Identities=12% Similarity=0.119 Sum_probs=67.6
Q ss_pred cHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHH-----HHHHcccCCCh-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHH
Q 002041 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVL-----SILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYN 578 (976)
Q Consensus 505 ~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l-----~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~L~~~l~~ll~ 578 (976)
+++-...++++++....++.... -+..++ +.+...++.+- =++++||.-+.++-++.+.. ..+.++++
T Consensus 429 narq~egalr~lasi~s~itk~s----p~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~--~ill~aye 502 (970)
T COG5656 429 NARQAEGALRLLASIKSFITKMS----PAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDN--GILLEAYE 502 (970)
T ss_pred cHHHHhhHHHHHHHHHHHhccCc----hHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccc--hHHHHHHH
Confidence 46777788888888888665543 233333 34445556553 27899999999996665542 11112222
Q ss_pred HHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHh
Q 002041 579 VYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIIN 636 (976)
Q Consensus 579 ~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~ 636 (976)
...+.+.+ ..+ ..+...--|+..++.. ++..+.+...+.+.++++-.+.+
T Consensus 503 ~t~ncl~n---n~l--pv~ieAalAlq~fi~~---~q~h~k~sahVp~tmekLLsLSn 552 (970)
T COG5656 503 NTHNCLKN---NHL--PVMIEAALALQFFIFN---EQSHEKFSAHVPETMEKLLSLSN 552 (970)
T ss_pred HHHHHHhc---CCc--chhhhHHHHHHHHHhc---hhhhHHHHhhhhHHHHHHHHhcc
Confidence 22222221 112 2344444455555544 35567788888898888766644
No 101
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=64.99 E-value=2.8e+02 Score=32.49 Aligned_cols=96 Identities=15% Similarity=0.187 Sum_probs=58.7
Q ss_pred cccchHHHhhhcc-CCC-CcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCC--ChHHHHHHHHHHHHHHH
Q 002041 488 EAEVMPQVMALLP-KLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST--SEDTAAAAALAFRHICD 563 (976)
Q Consensus 488 ~~~~l~~l~~~l~-~~~-~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~--~~~v~~~A~~al~~l~~ 563 (976)
..++++.+++.+. .+. ..|.+|..+..+.|..+.-++...+. ..+..+=.++...++. |+ +-...-.|+..+..
T Consensus 598 ~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~-~~l~klg~iLyE~lge~ypE-vLgsil~Ai~~I~s 675 (975)
T COG5181 598 GKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGET-KELAKLGNILYENLGEDYPE-VLGSILKAICSIYS 675 (975)
T ss_pred cCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchH-HHHHHHhHHHHHhcCcccHH-HHHHHHHHHHHHhh
Confidence 3567777777653 222 25789999999999999988865442 2455555566676664 45 55555555555554
Q ss_pred Hhh-hhhhcCHHHHHHHHHHHhh
Q 002041 564 DCR-KKLCGYLDGLYNVYRTAVN 585 (976)
Q Consensus 564 ~~~-~~L~~~l~~ll~~~~~~~~ 585 (976)
..+ ..+.|=+..++-.+..++.
T Consensus 676 v~~~~~mqpPi~~ilP~ltPILr 698 (975)
T COG5181 676 VHRFRSMQPPISGILPSLTPILR 698 (975)
T ss_pred hhcccccCCchhhccccccHhhh
Confidence 333 2345555555555555554
No 102
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.73 E-value=1.2e+02 Score=36.28 Aligned_cols=102 Identities=19% Similarity=0.212 Sum_probs=54.8
Q ss_pred HHHhHHHHHHHHhhcCCH-HHHHHHHHHHH--------H-HHHHhhhhh--hhhHHHHHHHHHHHHhhcCCccHHHHHHH
Q 002041 675 QRLWPIFKAIFDIRAWDM-RTMESLCRACK--------Y-AVRTSKRFM--GITIGAILEEIQGLYQQHQQPCFLYLSSE 742 (976)
Q Consensus 675 ~~~~~~l~~ll~~~~~~~-~v~e~~~~~~~--------~-~~~~~~~~~--~~~l~~l~~~l~~~~~~~~~~~~L~l~~~ 742 (976)
++..-++..++.+|++.. .++...|..+. . ++=-+|.+. .+-.+.+++.+...|...+.-.-+.++..
T Consensus 404 qE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a~elL~~f~en~~dE~~~Vql~LLta 483 (734)
T KOG1061|consen 404 QEAIVVIRDILRKYPNKYESVVAILCENLDSLQEPEAKAALIWILGEYAERIENALELLESFLENFKDETAEVQLELLTA 483 (734)
T ss_pred eehhHHHHhhhhcCCCchhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCcHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 345556666777776643 23333333322 1 111233333 24456677766666665554456889999
Q ss_pred HHHHhCCCCc-chHHHHHHHHHHHHHHHhhhcCcccCCCCCccHHH
Q 002041 743 VIKIFGSDPS-CASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADD 787 (976)
Q Consensus 743 li~~~~~~~~-~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pD~~~~ 787 (976)
.|..|++.+. ..+.++ .++.... +-.++||+++.
T Consensus 484 ~ik~Fl~~p~~tq~~l~--------~vL~~~~---~d~~~~dlrDr 518 (734)
T KOG1061|consen 484 AIKLFLKKPTETQELLQ--------GVLPLAT---ADTDNPDLRDR 518 (734)
T ss_pred HHHHHhcCCccHHHHHH--------HHHhhhh---ccccChhhhhh
Confidence 9999998753 333332 3332222 23567888765
No 103
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=64.67 E-value=3e+02 Score=32.65 Aligned_cols=216 Identities=12% Similarity=0.113 Sum_probs=100.4
Q ss_pred cHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCC-ChHHHHHHHHHHHHHHHHhhhh-hhcCHHHHHHHHHH
Q 002041 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST-SEDTAAAAALAFRHICDDCRKK-LCGYLDGLYNVYRT 582 (976)
Q Consensus 505 ~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~-~~~v~~~A~~al~~l~~~~~~~-L~~~l~~ll~~~~~ 582 (976)
.+.+....+.-+.....++.++|. ++..++..+...=.. ...++..|-..+..+|...... +.+-+-. .|..
T Consensus 255 ~te~~~~~L~~l~~l~~~~~~f~k---~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~---mY~a 328 (661)
T KOG2256|consen 255 DTEVLAFTLRHLTVLVPFLATFPK---LLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFKSTCLDPVLKT---MYLA 328 (661)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhhhHHHHHHHHH---HHHH
Confidence 445566666667777778888876 566666554421111 2237888877788888776543 2233222 2222
Q ss_pred Hhhcc---CCCCCC--HHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCccccc-CcchhhhHHHH
Q 002041 583 AVNGE---GSLKVS--AEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKK-HPRDLTVHIDR 656 (976)
Q Consensus 583 ~~~~~---~~~~l~--~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~ 656 (976)
.+.+. ...+++ ..-+..++|-. ++.......+.-.++.++.-.|.+++......+-+. ..=+++..++.
T Consensus 329 fv~nsk~~~~~tl~~i~Fl~~slvEL~-----~ld~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~l 403 (661)
T KOG2256|consen 329 FVRNSKFVTVNTLPLINFLQNSLVELL-----GLDLQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDL 403 (661)
T ss_pred HHHhCCCCCCcccchhHHHHHHHHHHh-----ccCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence 22210 001111 11122233322 233333444444455566666677766543211110 00123445555
Q ss_pred HHHHhhhcCCc-ccHHHHHHHHhHHHHHHHHhhc--CCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH-HhhcC
Q 002041 657 FAYIFRYVNHP-EAVADAIQRLWPIFKAIFDIRA--WDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGL-YQQHQ 732 (976)
Q Consensus 657 l~~~~~~~~~~-~~~~~~~~~~~~~l~~ll~~~~--~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~ 732 (976)
...+++..+++ .+..++.--+..+..-+....+ ....++=.+|+.+.+..++.|.++ |..|.+++.+-.. +.+.|
T Consensus 404 W~rvisf~~~~~s~lq~LvYpLvQvi~GvirLipT~qy~PLRlhcir~Li~Ls~ssg~fI-Pi~~ll~Eml~~~~~nrkp 482 (661)
T KOG2256|consen 404 WLRVISFANGSASQLQPLVYPLVQVILGVIRLIPTPQYYPLRLHCIRSLISLSRSSGTFI-PLSPLLVEMLKSVTFNRKP 482 (661)
T ss_pred HHHHHHHhhccHhhhhhhhhHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHhhcCcee-ecHHHHHHHHHHhhccCCc
Confidence 55554422221 1122111112222222222222 234566678888887777766654 5556666665443 44433
No 104
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=63.70 E-value=3.5e+02 Score=33.14 Aligned_cols=134 Identities=14% Similarity=0.137 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh---c--CHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHH-HHHHH
Q 002041 549 DTAAAAALAFRHICDDCRKKLC---G--YLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAK-KALEM 622 (976)
Q Consensus 549 ~v~~~A~~al~~l~~~~~~~L~---~--~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~-~~l~~ 622 (976)
++...||+|+.++|+.|..... . -++.+++.+..+- - .+..+..++++=.+-..-|.+-.+ ..+..
T Consensus 227 DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~Ie------y--iDvAEQ~LqALE~iSR~H~~AiL~AG~l~a 298 (1051)
T KOG0168|consen 227 DIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIE------Y--IDVAEQSLQALEKISRRHPKAILQAGALSA 298 (1051)
T ss_pred HHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhh------h--hHHHHHHHHHHHHHHhhccHHHHhcccHHH
Confidence 4999999999999999876443 2 3555555544331 1 123344455554444333322111 11111
Q ss_pred hhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcCCHHHHHHHHHHH
Q 002041 623 LCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRAC 702 (976)
Q Consensus 623 ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~v~e~~~~~~ 702 (976)
.+. .++-+....+ | .+|...+.++..+.. .-..++-+..|++..+++. .|...+|.+|.++
T Consensus 299 ~Ls-ylDFFSi~aQ-----------R---~AlaiaaN~Cksi~s--d~f~~v~ealPlL~~lLs~--~D~k~ies~~ic~ 359 (1051)
T KOG0168|consen 299 VLS-YLDFFSIHAQ-----------R---VALAIAANCCKSIRS--DEFHFVMEALPLLTPLLSY--QDKKPIESVCICL 359 (1051)
T ss_pred HHH-HHHHHHHHHH-----------H---HHHHHHHHHHhcCCC--ccchHHHHHHHHHHHHHhh--ccchhHHHHHHHH
Confidence 111 1111111100 1 134444444444432 1123345678999998875 4557899999999
Q ss_pred HHHHHHh
Q 002041 703 KYAVRTS 709 (976)
Q Consensus 703 ~~~~~~~ 709 (976)
-+++..+
T Consensus 360 ~ri~d~f 366 (1051)
T KOG0168|consen 360 TRIADGF 366 (1051)
T ss_pred HHHHHhc
Confidence 9988765
No 105
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=62.57 E-value=78 Score=30.59 Aligned_cols=70 Identities=13% Similarity=0.141 Sum_probs=50.0
Q ss_pred HHHHHHHcccCCCh--HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHh
Q 002041 535 SVLSILTSGMSTSE--DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVIT 609 (976)
Q Consensus 535 ~~l~~l~~~l~~~~--~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~ 609 (976)
-+++.+.+-++++. .....+..|+..+.+..+....||++.++..+.+.+.. .+...++.++.-++.++.
T Consensus 86 vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~-----~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 86 VVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRT-----CPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHh-----CCHHHHHHHHHHHHHHHH
Confidence 34466666667664 24557788888888776666689999999888888764 334667777877777665
No 106
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=59.86 E-value=1.9e+02 Score=28.68 Aligned_cols=106 Identities=16% Similarity=0.198 Sum_probs=63.1
Q ss_pred cCCCh-HHHHHHHHHHHHHHHHhhhhhh-------------cCHHH----HHHHHHH---HhhccCCCCCCHHhHHHHHH
Q 002041 544 MSTSE-DTAAAAALAFRHICDDCRKKLC-------------GYLDG----LYNVYRT---AVNGEGSLKVSAEDSLHLVE 602 (976)
Q Consensus 544 l~~~~-~v~~~A~~al~~l~~~~~~~L~-------------~~l~~----ll~~~~~---~~~~~~~~~l~~~~~~~l~e 602 (976)
+.+|. +++.+|+.++..+-+.++..|. ++... +++.... .++.+ -.......+++
T Consensus 49 l~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E----~~~~~l~q~lK 124 (182)
T PF13251_consen 49 LKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAE----KSPPVLTQLLK 124 (182)
T ss_pred HcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc----cccHHHHHHHH
Confidence 34443 5999999999998887664332 22222 2222222 22221 23456778999
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhh
Q 002041 603 ALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRY 663 (976)
Q Consensus 603 ai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 663 (976)
+++.++++.|.+... ..++.+++..+...+...+. ..-...+.++++++..
T Consensus 125 ~la~Lv~~tPY~rL~---~~ll~~~v~~v~~~l~~~d~-------~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 125 CLAVLVQATPYHRLP---PGLLTEVVTQVRPLLRHRDP-------NVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHccCChhhcC---HhHHHHHHHHHHHHHhcCCC-------cHHHHHHHHHHHHHcC
Confidence 999999999988765 24555666666666665321 1223456777776653
No 107
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.52 E-value=1.3e+02 Score=32.61 Aligned_cols=45 Identities=22% Similarity=0.240 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC---------hhHHHHHHHHhhc
Q 002041 5 NTVKEALNALYHHPDDAVRMQADRWLQDFQHT---------IDAWQVADNLLHD 49 (976)
Q Consensus 5 ~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s---------~~aw~~~~~lL~~ 49 (976)
.++..++..||..+++..+-||---|..+... .++.....+||++
T Consensus 250 p~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs 303 (550)
T KOG4224|consen 250 PKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQS 303 (550)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhC
Confidence 35778888999888888888888877765542 2334455666665
No 108
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=57.35 E-value=91 Score=26.91 Aligned_cols=74 Identities=9% Similarity=0.140 Sum_probs=53.3
Q ss_pred cCCCh-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 002041 544 MSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEM 622 (976)
Q Consensus 544 l~~~~-~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ 622 (976)
+++|. .++.+|-..|+++++.-. .-....+.++..+...+..+ ++..-+..+.|++.++...|.+.....++.
T Consensus 12 L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~-----DsyVYL~aI~~L~~La~~~p~~vl~~L~~~ 85 (92)
T PF10363_consen 12 LNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDE-----DSYVYLNAIKGLAALADRHPDEVLPILLDE 85 (92)
T ss_pred ccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCC-----CchHHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 34443 499999999999999765 33456788888888877642 455678899999999999886444444443
Q ss_pred h
Q 002041 623 L 623 (976)
Q Consensus 623 l 623 (976)
+
T Consensus 86 y 86 (92)
T PF10363_consen 86 Y 86 (92)
T ss_pred H
Confidence 3
No 109
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=56.49 E-value=1.7e+02 Score=33.23 Aligned_cols=48 Identities=15% Similarity=-0.024 Sum_probs=25.2
Q ss_pred HHHHhhchHHHHHHHHHHcccCC----CCCCcccHHHHHHHHHHHhhHHHHH
Q 002041 855 DSVIIPRGASITRILIASLTGAL----PSSRLETVTYALLALTRAYGVRSLE 902 (976)
Q Consensus 855 ~~~~~~~g~~lv~~ll~~l~~~~----~~~~~~~~~~~L~~l~~~~~~~~~~ 902 (976)
-.++..+...++..++.++-... .+.+......++..+....|..+.+
T Consensus 327 ~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 327 LSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp HHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 34555666666666666653322 2233334445666666666655554
No 110
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=56.02 E-value=2.7e+02 Score=29.41 Aligned_cols=230 Identities=10% Similarity=0.050 Sum_probs=126.3
Q ss_pred CCCcchhhHHHHHHHHhhcccCcc--cccchHHHhhhcc-CCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHH
Q 002041 464 HNEWRPAEAALFCIRAISTYVSVV--EAEVMPQVMALLP-KLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 540 (976)
Q Consensus 464 ~~~w~~~Ea~L~~l~~i~e~~~~~--~~~~l~~l~~~l~-~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l 540 (976)
+.++..++-++.+|+.+-+.++.+ ....+..++++.. ++..|+.+..+ +..+.+..+.-.-.+ .....++..+
T Consensus 10 sed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~-l~gl~~L~~~~~~~~---~~~~~i~~~l 85 (262)
T PF14500_consen 10 SEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPA-LKGLLALVKMKNFSP---ESAVKILRSL 85 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHH-HHHHHHHHhCcCCCh---hhHHHHHHHH
Confidence 567888999999999999988865 2334566666654 45544444333 333333221111111 2456677777
Q ss_pred HcccCCCh---HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHH
Q 002041 541 TSGMSTSE---DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAK 617 (976)
Q Consensus 541 ~~~l~~~~---~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~ 617 (976)
++..+.+. ..|..+-.-+..+.+..+..+...-+.++..+.+...+. -++.....+++-+-.++...+.
T Consensus 86 ~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gE----kDPRnLl~~F~l~~~i~~~~~~---- 157 (262)
T PF14500_consen 86 FQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGE----KDPRNLLLSFKLLKVILQEFDI---- 157 (262)
T ss_pred HHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccC----CCHHHHHHHHHHHHHHHHhccc----
Confidence 66555432 366677777777888777777666677787777777653 3566777777777767777662
Q ss_pred HHHHHhhhHHHHHHHHHHhcCC-------Cccccc-CcchhhhHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhc
Q 002041 618 KALEMLCLPVVTPLQEIINQGP-------EILQKK-HPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRA 689 (976)
Q Consensus 618 ~~l~~ll~p~~~~l~~~~~~~~-------~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~ 689 (976)
.+..+.+-.++.-.= +++.-. ...++. ..+..++.+ +| .+-.-++|.+ +++..
T Consensus 158 -------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk---~~L~~cl~s----~~--~fa~~~~p~L---leKL~ 218 (262)
T PF14500_consen 158 -------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLK---RALRNCLSS----TP--LFAPFAFPLL---LEKLD 218 (262)
T ss_pred -------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHH---HHHHHHhcC----cH--hhHHHHHHHH---HHHHc
Confidence 334444444443211 111000 112222 222222221 11 1113444543 33332
Q ss_pred -CCHHHHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHH
Q 002041 690 -WDMRTMESLCRACKYAVRTSKRF-MGITIGAILEEI 724 (976)
Q Consensus 690 -~~~~v~e~~~~~~~~~~~~~~~~-~~~~l~~l~~~l 724 (976)
....+...+...+..++..+|.. +.++..++.+.+
T Consensus 219 s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 219 STSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred CCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 23446666777777788777654 566666666544
No 111
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=55.95 E-value=3.7e+02 Score=30.94 Aligned_cols=192 Identities=14% Similarity=0.148 Sum_probs=99.0
Q ss_pred ccchHHHhhhcc----CCCC--cHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCChHHHHHHHHHHHHHH
Q 002041 489 AEVMPQVMALLP----KLPQ--QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHIC 562 (976)
Q Consensus 489 ~~~l~~l~~~l~----~~~~--~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~ 562 (976)
+.++...+.++. .-|+ +|.+.++++.-|..-.+-...-|- +...+++-+.+- +-.+++ .++|
T Consensus 149 ~S~iRaai~f~i~~GkkGpe~vpp~lvkvvl~~ia~vgeS~qyPPV---NWaalLsPLMRl-nfGeEv--------q~lC 216 (589)
T PF11229_consen 149 SSFIRAAIDFLIEAGKKGPESVPPSLVKVVLKPIATVGESYQYPPV---NWAALLSPLMRL-NFGEEV--------QQLC 216 (589)
T ss_pred hhHHHHHHHHHHHccccCCccCCHHHHHHHHHHhhhcCCCCCCCCc---cHHHHhhHHHhc-cccHHH--------HHHH
Confidence 455666666653 2242 567777777766443332232232 566666666542 222323 3444
Q ss_pred HHhhh-h--hhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCC
Q 002041 563 DDCRK-K--LCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGP 639 (976)
Q Consensus 563 ~~~~~-~--L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~ 639 (976)
-+... + =......++..+.. .+--..++...+.+++++++..+..+|+++++.+.+.+.-..++ .. +
T Consensus 217 LeiAvtQaqSSqsAa~fLg~Wls---Ppli~sLs~~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~---~~-~--- 286 (589)
T PF11229_consen 217 LEIAVTQAQSSQSAAMFLGSWLS---PPLIHSLSVNTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFK---AA-S--- 286 (589)
T ss_pred HHHHHHhccccccHHHHHHhhcC---cchhhhhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHh---hc-C---
Confidence 32211 0 01122223322211 00012366778999999999999999998887666643333222 11 1
Q ss_pred CcccccCcchhhhHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhh
Q 002041 640 EILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSK 710 (976)
Q Consensus 640 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~v~e~~~~~~~~~~~~~~ 710 (976)
...+.......+-.+...++.|.|......-+....+.++..++++ +.+.-++.+.....++.
T Consensus 287 ------~~~~~~lC~saLqGLsqAMKlP~P~~h~Ws~Lc~ttekIF~lLPn~--i~~~eveLYi~vAkCLS 349 (589)
T PF11229_consen 287 ------RPSNPELCQSALQGLSQAMKLPSPAQHCWSLLCETTEKIFDLLPNK--IQRNEVELYIGVAKCLS 349 (589)
T ss_pred ------CCCChHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhCccc--ccHHHHHHHHHHHHHHh
Confidence 1111222344445555566677776655666666777777777763 33444455544444443
No 112
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=53.98 E-value=2.3e+02 Score=34.58 Aligned_cols=113 Identities=17% Similarity=0.196 Sum_probs=67.8
Q ss_pred CCccHHHHHHHHHHHHhhCCCcc---cCcCChHHHHHHHHHhcccCCchhHHHHHHHHHHhhcccCCCCchhhHHHHHHH
Q 002041 781 RPDVADDCFLLASRCIRYCPQLF---IPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSV 857 (976)
Q Consensus 781 ~pD~~~~~f~l~~~~~~~~p~~~---~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~l~~~~~~~~~~~~~~~~~~~ 857 (976)
.|+-+-..+.|+..++++.|..+ ...++|..++.|.. .-.+..++.+|+.++..++=...+ .
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~---~D~~~~~~~~al~~LimlLP~ip~------------~ 145 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQ---FDTSITVVSSALLVLIMLLPHIPS------------S 145 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHh---hcccHHHHHHHHHHHHHHhccccc------------h
Confidence 57788888999999999988654 45778888888852 224455567788888877732211 1
Q ss_pred HhhchHHHHHHHHHHcccCCC-CCCcc---------cHHHHHHHHHHHhhHHHHHHHHHHH
Q 002041 858 IIPRGASITRILIASLTGALP-SSRLE---------TVTYALLALTRAYGVRSLEWAKESV 908 (976)
Q Consensus 858 ~~~~g~~lv~~ll~~l~~~~~-~~~~~---------~~~~~L~~l~~~~~~~~~~wl~~~l 908 (976)
+.++.+.|.......++|... ...++ .+-..+..|+-.||-+|-.||++-+
T Consensus 146 l~~~L~~Lf~If~Rl~~W~~~~~~~~~~~~~~~l~~~~~~lFt~LYGlyP~NF~~flr~~y 206 (668)
T PF04388_consen 146 LGPHLPDLFNIFGRLLSWERKNPGSVPEVYLIHLQASVYALFTRLYGLYPCNFLSFLRQHY 206 (668)
T ss_pred hhHHHHHHHHHHHHHHHcccCCCCCccccccccchhhHHHHHHHHHhcccchHHHHHHHHH
Confidence 122333333333333344431 11111 1223556667788999999999755
No 113
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=52.79 E-value=64 Score=28.65 Aligned_cols=97 Identities=16% Similarity=0.133 Sum_probs=58.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcC----------hhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCCCChhh
Q 002041 10 ALNALYHHPDDAVRMQADRWLQDFQHT----------IDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEA 79 (976)
Q Consensus 10 al~~ly~~~d~~~r~~A~~~L~~~q~s----------~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~ 79 (976)
.+..+...+++..|..|-..|..+-.. .++++....++.+ .+..++..|+.+|.+...... ...
T Consensus 11 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--~~~~v~~~a~~~L~~l~~~~~----~~~ 84 (120)
T cd00020 11 ALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS--EDEEVVKAALWALRNLAAGPE----DNK 84 (120)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC--CCHHHHHHHHHHHHHHccCcH----HHH
Confidence 333344555677888877777776654 2566667777765 477899999999998865431 111
Q ss_pred HHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHH
Q 002041 80 VRGLQDSLNTLLKKFH-KGPPKVRTQISIAVAAL 112 (976)
Q Consensus 80 ~~~lr~~Ll~~l~~~~-~~~~~v~~kL~~~La~l 112 (976)
....+..++..+.+.- .....++...+.+|..+
T Consensus 85 ~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 85 LIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 2222333444444422 24566777777777655
No 114
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=52.34 E-value=2.6e+02 Score=28.10 Aligned_cols=63 Identities=8% Similarity=0.032 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHH
Q 002041 551 AAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKK 618 (976)
Q Consensus 551 ~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~ 618 (976)
....-..+..+.+.++..-.|++..++..+.++.... +.+-+..+=+++|+.|.+++++....
T Consensus 17 w~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~-----~f~~~~~~e~~lgaAi~amGpe~vL~ 79 (198)
T PF08161_consen 17 WPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESE-----DFSFRKELEQVLGAAIRAMGPEQVLS 79 (198)
T ss_pred HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCC-----CcchHHHHHHHHHHHHHHCCHHHHHH
Confidence 3333444445555566666677777777777776542 25567888888999999998876543
No 115
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=51.29 E-value=7.2e+02 Score=32.88 Aligned_cols=83 Identities=11% Similarity=0.028 Sum_probs=53.9
Q ss_pred hHHHHHHHHHcccCCCh-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhc
Q 002041 532 ILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (976)
Q Consensus 532 ~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (976)
.+.+.+..++.+++++. .++..|-+++..+++.-.. +....+.-......+.. -+...|+.++|-+|..|-+
T Consensus 813 sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~-vL~~~dvq~~Vh~R~~D------ssasVREAaldLvGrfvl~ 885 (1692)
T KOG1020|consen 813 SFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPS-VLSRPDVQEAVHGRLND------SSASVREAALDLVGRFVLS 885 (1692)
T ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH-hhcCHHHHHHHHHhhcc------chhHHHHHHHHHHhhhhhc
Confidence 56777777777788764 5899999999988875333 33333333344444432 2467899999999988888
Q ss_pred CChHHHHHHHHH
Q 002041 611 LPQVDAKKALEM 622 (976)
Q Consensus 611 ~p~~~~~~~l~~ 622 (976)
-| +-..+|.++
T Consensus 886 ~~-e~~~qyY~~ 896 (1692)
T KOG1020|consen 886 IP-ELIFQYYDQ 896 (1692)
T ss_pred cH-HHHHHHHHH
Confidence 65 233344443
No 116
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=48.43 E-value=2.6e+02 Score=26.97 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChH
Q 002041 573 LDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQV 614 (976)
Q Consensus 573 l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~ 614 (976)
-+++++.+.+++.+. -+.+-|..+++.+| +++++.+-
T Consensus 8 yP~LL~~L~~iLk~e----~s~~iR~E~lr~lG-ilGALDP~ 44 (160)
T PF11865_consen 8 YPELLDILLNILKTE----QSQSIRREALRVLG-ILGALDPY 44 (160)
T ss_pred hHHHHHHHHHHHHhC----CCHHHHHHHHHHhh-hccccCcH
Confidence 356888888888753 34778999999998 56666543
No 117
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=47.82 E-value=7.3e+02 Score=31.98 Aligned_cols=276 Identities=14% Similarity=0.157 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHHHhcC-------hhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHH
Q 002041 20 DAVRMQADRWLQDFQHT-------IDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLK 92 (976)
Q Consensus 20 ~~~r~~A~~~L~~~q~s-------~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~ 92 (976)
.+.|..|-+.|+.+.+- +.-......++.+ ....||--|..||...+.. -..+++.+...+-++|+-.|.
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~D--s~a~Vra~Al~Tlt~~L~~-Vr~~~~~daniF~eYlfP~L~ 513 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMD--SEADVRATALETLTELLAL-VRDIPPSDANIFPEYLFPHLN 513 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcC--chHHHHHHHHHHHHHHHhh-ccCCCcccchhhHhhhhhhhH
Confidence 34677788888877662 2224455666665 4556999999999876642 236778888889999999998
Q ss_pred HhcC--CChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcC----CCCCcHHHHHHHHhhcccccccccccCChhH
Q 002041 93 KFHK--GPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMN----SHPEFVPGFLELLTVLPEEVFNYKIAARPER 166 (976)
Q Consensus 93 ~~~~--~~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l~----~~~~~~~~~L~~L~~l~EE~~~~~~~~~~~~ 166 (976)
++.. .+..||--.+.+||.++...+. |+..-.+.-+ +.|+.. ..+|+- .+..
T Consensus 514 ~l~~d~~~~~vRiayAsnla~LA~tA~r-------Fle~~q~~~~~g~~n~~nse--------t~~~~~-------~~~~ 571 (1431)
T KOG1240|consen 514 HLLNDSSAQIVRIAYASNLAQLAKTAYR-------FLELTQELRQAGMLNDPNSE--------TAPEQN-------YNTE 571 (1431)
T ss_pred hhhccCccceehhhHHhhHHHHHHHHHH-------HHHHHHHHHhcccccCcccc--------cccccc-------cchH
Confidence 8654 3567888888999999987653 3332222111 122210 122221 1233
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhh--HHHHHHHHHHHHh-hhccCCCCCcccccchhHHHHHhcCCCc--chHHHHHH
Q 002041 167 RRQFEKELTSQMEVALSTLTACLHIN--ELKEQVLEAFASW-LRLKHRIPGSVLASHPLVLTALSSLHSE--ILSEASVN 241 (976)
Q Consensus 167 r~~l~~~l~~~~~~vl~~l~~~l~~~--~~~~~~l~~~~sW-i~~~~~i~~~~l~~~~l~~~~~~~L~~~--~~~~~a~~ 241 (976)
++++.+.++ +...+.+.++ -++...++.+.-- ..+| ..- .+.-+++.++.+|++. .++.+-.|
T Consensus 572 ~~~L~~~V~-------~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFG-k~k----sND~iLshLiTfLNDkDw~LR~aFfd 639 (1431)
T KOG1240|consen 572 LQALHHTVE-------QMVSSLLSDSPPIVKRALLESIIPLCVFFG-KEK----SNDVILSHLITFLNDKDWRLRGAFFD 639 (1431)
T ss_pred HHHHHHHHH-------HHHHHHHcCCchHHHHHHHHHHHHHHHHhh-hcc----cccchHHHHHHHhcCccHHHHHHHHh
Confidence 334433332 2333344443 3455555554332 2222 222 2445677778888764 45544444
Q ss_pred HHHHHhhhhccCCCCCccCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHHHHhcCCchhHHHHHHH
Q 002041 242 VISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHAL 321 (976)
Q Consensus 242 ~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~v~~l~~~~~~~~~d~e~~~~~~~l~~~~~~~~~~~l~~~~~~~~~ll~~l 321 (976)
.|.-+--.-.. ..+=+.++|.+ .+.+. +.+|-.+.....-+..+.+.. ++ +. ..+.++++..
T Consensus 640 sI~gvsi~VG~---------rs~seyllPLl---~Q~lt--D~EE~Viv~aL~~ls~Lik~~--ll-~K-~~v~~i~~~v 701 (1431)
T KOG1240|consen 640 SIVGVSIFVGW---------RSVSEYLLPLL---QQGLT--DGEEAVIVSALGSLSILIKLG--LL-RK-PAVKDILQDV 701 (1431)
T ss_pred hccceEEEEee---------eeHHHHHHHHH---HHhcc--CcchhhHHHHHHHHHHHHHhc--cc-ch-HHHHHHHHhh
Confidence 44322211110 01112233432 11221 111211112112222221110 11 00 2356778888
Q ss_pred HhhccCCCcchhhhhHHHHHHHHHHhccc
Q 002041 322 LEVASHPEYDIASMTFNFWHSLQVILTKR 350 (976)
Q Consensus 322 L~~~~~~~~~vs~~~l~fW~~l~~~l~~~ 350 (976)
+-++.||+.=|...++.|.....+.+...
T Consensus 702 ~PlL~hPN~WIR~~~~~iI~~~~~~ls~a 730 (1431)
T KOG1240|consen 702 LPLLCHPNLWIRRAVLGIIAAIARQLSAA 730 (1431)
T ss_pred hhheeCchHHHHHHHHHHHHHHHhhhhhh
Confidence 88899999999999999988777766543
No 118
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=46.64 E-value=2.1e+02 Score=25.41 Aligned_cols=99 Identities=11% Similarity=0.111 Sum_probs=55.6
Q ss_pred HHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcCCHHHHHHHH
Q 002041 620 LEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLC 699 (976)
Q Consensus 620 l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~v~e~~~ 699 (976)
++.-+-.+++.+...+...... .....-...+..|+.+++..+ ..+..+..+++..+...+ ..+++.+.++
T Consensus 5 L~~~~Lgil~~f~~~l~d~~~~---~~~~ek~~~l~si~~lI~~~~--~~i~~~~pQI~a~L~sal----~~~~l~~~al 75 (107)
T PF08064_consen 5 LQPHILGILTRFSDVLNDLRGK---KPIPEKKRALRSIEELIKLGG--SHISSARPQIMACLQSAL----EIPELREEAL 75 (107)
T ss_pred HHHHHHHHHHHHHHHHhccccC---CCHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHh----CChhhHHHHH
Confidence 3333344556666666652110 011122346777777777322 223333345554444444 3358889999
Q ss_pred HHHHHHHHHhhh-hhhhhHHHHHHHHHHH
Q 002041 700 RACKYAVRTSKR-FMGITIGAILEEIQGL 727 (976)
Q Consensus 700 ~~~~~~~~~~~~-~~~~~l~~l~~~l~~~ 727 (976)
+++...++.+++ .+.|+++.++-.+...
T Consensus 76 ~~W~~fi~~L~~~~l~~ll~~~~~~l~~~ 104 (107)
T PF08064_consen 76 SCWNCFIKTLDEEDLGPLLDQIFAILLPL 104 (107)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHh
Confidence 999999988754 5677777776655543
No 119
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=46.37 E-value=2.9e+02 Score=30.22 Aligned_cols=141 Identities=16% Similarity=0.225 Sum_probs=87.3
Q ss_pred CCCcchhhHHHHHHHHhhcccCcccc----cchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCc------chH
Q 002041 464 HNEWRPAEAALFCIRAISTYVSVVEA----EVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDP------SIL 533 (976)
Q Consensus 464 ~~~w~~~Ea~L~~l~~i~e~~~~~~~----~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~------~~l 533 (976)
+.+-++.|.++.-|.-..+.++...+ ..+..++..+.. .++-+|..+.++||... ..||... ..+
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~--~~~~lR~~Aa~Vigt~~---qNNP~~Qe~v~E~~~L 168 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLEN--SDAELRELAARVIGTAV---QNNPKSQEQVIELGAL 168 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcC--CcHHHHHHHHHHHHHHH---hcCHHHHHHHHHcccH
Confidence 67889999999999999998876432 334444443322 36899999999999875 4555311 134
Q ss_pred HHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhhhhhcC--HHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcC
Q 002041 534 ASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGY--LDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 611 (976)
Q Consensus 534 ~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~~~L~~~--l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~ 611 (976)
..++..+. -+.+..++..|-+|+..++..-......+ ++. +..+.++++.+ +.+...+.+++.-++.++...
T Consensus 169 ~~Ll~~ls--~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G-~~~L~~vl~~~---~~~~~lkrK~~~Ll~~Ll~~~ 242 (342)
T KOG2160|consen 169 SKLLKILS--SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG-YQVLRDVLQSN---NTSVKLKRKALFLLSLLLQED 242 (342)
T ss_pred HHHHHHHc--cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-HHHHHHHHHcC---CcchHHHHHHHHHHHHHHHhh
Confidence 44444443 23344588899999988887654422211 111 23334444331 234566788888888888886
Q ss_pred ChHH
Q 002041 612 PQVD 615 (976)
Q Consensus 612 p~~~ 615 (976)
+.++
T Consensus 243 ~s~~ 246 (342)
T KOG2160|consen 243 KSDE 246 (342)
T ss_pred hhhh
Confidence 6543
No 120
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=46.26 E-value=7.3e+02 Score=31.50 Aligned_cols=131 Identities=17% Similarity=0.121 Sum_probs=81.1
Q ss_pred hhhHHHHHHHHhhcccCccc-ccchHHHhhhcc--C-CCCcHHHHHHH----HHHHHhcHHH------------------
Q 002041 469 PAEAALFCIRAISTYVSVVE-AEVMPQVMALLP--K-LPQQPQLLQTV----CLTIGAYSKW------------------ 522 (976)
Q Consensus 469 ~~Ea~L~~l~~i~e~~~~~~-~~~l~~l~~~l~--~-~~~~~~v~~t~----~~~ig~y~~~------------------ 522 (976)
-++|++|...+++.+-.+.+ .+++.++...|. . +....-+|+++ -+.+||...+
T Consensus 444 VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~r 523 (1133)
T KOG1943|consen 444 VRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNR 523 (1133)
T ss_pred hHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhh
Confidence 46999999999998766543 445555665442 1 22222333332 2456664433
Q ss_pred ----------HhhCCCCcchHHHHHHHHHcc-cCC-ChHHHHHHHHHHHHHHHHhhhhhh-cCHHHHHHHHHHHhhccCC
Q 002041 523 ----------FDAASSDPSILASVLSILTSG-MST-SEDTAAAAALAFRHICDDCRKKLC-GYLDGLYNVYRTAVNGEGS 589 (976)
Q Consensus 523 ----------~~~~p~~~~~l~~~l~~l~~~-l~~-~~~v~~~A~~al~~l~~~~~~~L~-~~l~~ll~~~~~~~~~~~~ 589 (976)
++..|+ |..++++-++.. +-| ..+++..|++||.++...-.+.+. -++++++... +
T Consensus 524 sNcy~~l~~~ia~~~~---y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~---l----- 592 (1133)
T KOG1943|consen 524 SNCYLDLCVSIAEFSG---YREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDST---L----- 592 (1133)
T ss_pred hhHHHHHhHHHHhhhh---HHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhh---c-----
Confidence 223333 666666655432 333 224899999999999988777777 5677766442 1
Q ss_pred CCCCHHhHHHHHHHHHHHHhcC
Q 002041 590 LKVSAEDSLHLVEALSMVITEL 611 (976)
Q Consensus 590 ~~l~~~~~~~l~eai~~vi~~~ 611 (976)
.-+...|.-.+-+.|.|+.+.
T Consensus 593 -s~~~~~r~g~~la~~ev~~~~ 613 (1133)
T KOG1943|consen 593 -SKDASMRHGVFLAAGEVIGAL 613 (1133)
T ss_pred -CCChHHhhhhHHHHHHHHHHh
Confidence 134567788888888888774
No 121
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=45.47 E-value=4.8e+02 Score=29.19 Aligned_cols=125 Identities=9% Similarity=0.102 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCCc------cHHHHHHHHHHHhCC-CCcch--HHHHHHHHHHH
Q 002041 695 MESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQP------CFLYLSSEVIKIFGS-DPSCA--SYLHNLIEALF 765 (976)
Q Consensus 695 ~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~------~~L~l~~~li~~~~~-~~~~~--~~l~~~~~~l~ 765 (976)
+.++|.+++...+..+..+.+.+...++.+.+.|...+.. +.+++++.+..+-.. ..+.. +.+.++..-+.
T Consensus 228 R~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~ 307 (370)
T PF08506_consen 228 RRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFS 307 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHH
Confidence 4568888887777777777777777777777777776643 346666665543211 11111 11112222223
Q ss_pred HHHHhhhcCcccCCCCCccHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHhcccCCch
Q 002041 766 KRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHRE 826 (976)
Q Consensus 766 ~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~~~~l~~~~~~~~~~l~~~~~~ 826 (976)
+.+++-|. .+...+|=+..+.+.++..+-...| .+.+..+++..+..+..++..
T Consensus 308 ~~v~peL~--~~~~~~piLka~aik~~~~Fr~~l~-----~~~l~~~~~~l~~~L~~~~~v 361 (370)
T PF08506_consen 308 QHVLPELQ--PDVNSHPILKADAIKFLYTFRNQLP-----KEQLLQIFPLLVNHLQSSSYV 361 (370)
T ss_dssp HHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS------HHHHHHHHHHHHHHTTSS-HH
T ss_pred HHhHHHhc--ccCCCCcchHHHHHHHHHHHHhhCC-----HHHHHHHHHHHHHHhCCCCcc
Confidence 44444444 2345566677777777777766544 335666777777777766543
No 122
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=45.18 E-value=4.9e+02 Score=29.17 Aligned_cols=39 Identities=0% Similarity=-0.101 Sum_probs=32.3
Q ss_pred ccCcCChHHHHHHHHHhcccCCchhHHHHHHHHHHhhcc
Q 002041 803 FIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDL 841 (976)
Q Consensus 803 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~l~~~ 841 (976)
+-..+.+...+.....|....++.+-..|+..|..++..
T Consensus 266 ~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~ 304 (372)
T PF12231_consen 266 LDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYA 304 (372)
T ss_pred hhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 334567888888888889999999999999999999874
No 123
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=43.86 E-value=3.3e+02 Score=26.89 Aligned_cols=81 Identities=11% Similarity=0.162 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCC-cccHHHHH
Q 002041 596 DSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH-PEAVADAI 674 (976)
Q Consensus 596 ~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~ 674 (976)
=+....+|+--++..-+.+...+.+.+++.|+-.. ++..+ .......|++|..++.+... .+...+++
T Consensus 54 y~flA~~g~~dll~~~~~~kilPvlPqLI~plk~A----L~tr~-------~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyy 122 (183)
T PF10274_consen 54 YRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRA----LNTRD-------PEVFCATLKALQQLVTSSDMVGEALVPYY 122 (183)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH----HhCCC-------HHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 35566667766666645567778888888887544 44321 23345567777776554322 24566777
Q ss_pred HHHhHHHHHHHHh
Q 002041 675 QRLWPIFKAIFDI 687 (976)
Q Consensus 675 ~~~~~~l~~ll~~ 687 (976)
.++.|.+.....+
T Consensus 123 rqLLp~ln~f~~k 135 (183)
T PF10274_consen 123 RQLLPVLNLFKNK 135 (183)
T ss_pred HHHHHHHHHHHhc
Confidence 8888877755444
No 124
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=43.25 E-value=7.3e+02 Score=30.64 Aligned_cols=204 Identities=13% Similarity=0.148 Sum_probs=103.9
Q ss_pred cchhhHHHHHHHHhhcccCccc-----ccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCC---cchHHHHHH
Q 002041 467 WRPAEAALFCIRAISTYVSVVE-----AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSD---PSILASVLS 538 (976)
Q Consensus 467 w~~~Ea~L~~l~~i~e~~~~~~-----~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~---~~~l~~~l~ 538 (976)
..-.--|+.||..+.|.++... ...+|-+++.|..+. ...|...++.++-..+ ..||.. ..-|..++.
T Consensus 226 ~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~Ie-yiDvAEQ~LqALE~iS---R~H~~AiL~AG~l~a~Ls 301 (1051)
T KOG0168|consen 226 FDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIE-YIDVAEQSLQALEKIS---RRHPKAILQAGALSAVLS 301 (1051)
T ss_pred HHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhh-hhHHHHHHHHHHHHHH---hhccHHHHhcccHHHHHH
Confidence 4444567778888888887763 345777777665443 3344444444444333 235541 013455565
Q ss_pred HHHcccCCChHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHH
Q 002041 539 ILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKK 618 (976)
Q Consensus 539 ~l~~~l~~~~~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~ 618 (976)
|+ ..+.. . +|+.|...-.+.|+..+..=..++-.-+-.+.++++.. +....+.+.-+.++++...... .+
T Consensus 302 yl-DFFSi-~-aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~-----D~k~ies~~ic~~ri~d~f~h~--~~ 371 (1051)
T KOG0168|consen 302 YL-DFFSI-H-AQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQ-----DKKPIESVCICLTRIADGFQHG--PD 371 (1051)
T ss_pred HH-HHHHH-H-HHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhc-----cchhHHHHHHHHHHHHHhcccC--hH
Confidence 55 11111 1 45555555567777655543344444444555555432 1223344445556666664332 24
Q ss_pred HHHHhhhH-HHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCCcccHHHHH-HHHhHHHHHHHHhhc
Q 002041 619 ALEMLCLP-VVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI-QRLWPIFKAIFDIRA 689 (976)
Q Consensus 619 ~l~~ll~p-~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~ 689 (976)
.+++++++ ++.+.++++.-...... ...++..|..++.+.++. |-.....+ ..+-..+..++.-+.
T Consensus 372 kLdql~s~dLi~~~~qLlsvt~t~Ls---~~~~~~vIrmls~msS~~--pl~~~tl~k~~I~~~L~~il~g~s 439 (1051)
T KOG0168|consen 372 KLDQLCSHDLITNIQQLLSVTPTILS---NGTYTGVIRMLSLMSSGS--PLLFRTLLKLDIADTLKRILQGYS 439 (1051)
T ss_pred HHHHHhchhHHHHHHHHHhcCccccc---ccchhHHHHHHHHHccCC--hHHHHHHHHhhHHHHHHHHHhccC
Confidence 45666643 66777777765432211 123445666666655432 22222222 345566777776664
No 125
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.76 E-value=7.8e+02 Score=30.85 Aligned_cols=61 Identities=10% Similarity=0.131 Sum_probs=43.4
Q ss_pred hHHHHHHHHhhhcCC-cccHHHHHHHHhHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhhhhh
Q 002041 652 VHIDRFAYIFRYVNH-PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMG 714 (976)
Q Consensus 652 ~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~~~v~e~~~~~~~~~~~~~~~~~~ 714 (976)
.+|++++-.+..++. ++-..+...+.||-+-..+. .+|+-+++++|.+++.+..-.|.++.
T Consensus 822 kaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~--~k~~L~v~~a~~~i~~m~~~sgDFv~ 883 (1014)
T KOG4524|consen 822 KALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLL--CKDPLIVQRAFSCIEQMGKYSGDFVA 883 (1014)
T ss_pred HHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHh--cCchHHHHHHHHHHHHHHHHhhhHHH
Confidence 356666665555544 45577888999987665554 35778999999999988777777654
No 126
>PF12422 Condensin2nSMC: Condensin II non structural maintenance of chromosomes subunit; InterPro: IPR024741 Subunit G2 is a non-SMC subunit of condensin II, which is involved in maintenance of the structural integrity of chromosomes. Condensin II is made up of SMC (structural maintenance of chromosomes) and non-SMC subunits. The non-SMC subunits bind to the catalytic ends of the SMC subunit dimer. The condensin holocomplex is able to introduce superhelical tension into DNA in an ATP hydrolysis- dependent manner, resulting in the formation of positive supercoils in the presence of topoisomerase I and of positive knots in the presence of topoisomerase II [].; GO: 0005634 nucleus
Probab=42.18 E-value=89 Score=29.91 Aligned_cols=29 Identities=21% Similarity=0.066 Sum_probs=23.8
Q ss_pred HHHHHcccCCCCCCcccHHHHHHHHHHHh
Q 002041 868 ILIASLTGALPSSRLETVTYALLALTRAY 896 (976)
Q Consensus 868 ~ll~~l~~~~~~~~~~~~~~~L~~l~~~~ 896 (976)
+++.+.++..+++.++.++++++.-+++.
T Consensus 36 ~~i~~~~~~~~~~~le~y~ei~~~aWk~a 64 (152)
T PF12422_consen 36 KLIKCQIPQVSKSVLELYGEILFRAWKKA 64 (152)
T ss_pred HHHHHHcccccHHHHHHHHHHHHHHhHhh
Confidence 45555567888899999999999998877
No 127
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=41.76 E-value=36 Score=22.31 Aligned_cols=20 Identities=25% Similarity=0.212 Sum_probs=16.3
Q ss_pred CCCcchhhHHHHHHHHhhcc
Q 002041 464 HNEWRPAEAALFCIRAISTY 483 (976)
Q Consensus 464 ~~~w~~~Ea~L~~l~~i~e~ 483 (976)
+.+|.-++++.++++.+++.
T Consensus 11 D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 11 DPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp -SSHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHhh
Confidence 56888899999999988865
No 128
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=41.69 E-value=9e+02 Score=31.25 Aligned_cols=58 Identities=21% Similarity=0.151 Sum_probs=44.2
Q ss_pred cHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCCh-HHHHHHHHHHHHHHHHhh
Q 002041 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCR 566 (976)
Q Consensus 505 ~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~ 566 (976)
.+..+..+++++..++.++...- -|..+++|++..+.++. +|+..|-.++.++..-.+
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~----~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr 494 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEV----KLDRVLPYFVHLLMDSEADVRATALETLTELLALVR 494 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHH----HHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhcc
Confidence 34568889999999999887653 69999999999998876 577777666666554433
No 129
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=39.59 E-value=3.6e+02 Score=29.81 Aligned_cols=129 Identities=12% Similarity=0.135 Sum_probs=67.3
Q ss_pred HHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcccccchHHHhhhccC-CCCcHHHHHHHHHHHHhcHHHHhh
Q 002041 447 KILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-LPQQPQLLQTVCLTIGAYSKWFDA 525 (976)
Q Consensus 447 ~~l~~~l~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~~-~~~~~~v~~t~~~~ig~y~~~~~~ 525 (976)
+..+..+.+.+. +.+-..++++|..|. . +.+-.+.+|.++.++.. ...+..--...+..+.++..=+-.
T Consensus 177 q~yf~~It~a~~-----~~~~~~r~~aL~sL~---t--D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~ 246 (343)
T cd08050 177 QLYFEEITEALV-----GSNEEKRREALQSLR---T--DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLD 246 (343)
T ss_pred HHHHHHHHHHHh-----CCCHHHHHHHHHHhc---c--CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhc
Confidence 334555655543 223334555555543 2 12234677777777642 211100012223334444444555
Q ss_pred CCCC------cchHHHHHHHHHcc-c-CCC-----hHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhh
Q 002041 526 ASSD------PSILASVLSILTSG-M-STS-----EDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN 585 (976)
Q Consensus 526 ~p~~------~~~l~~~l~~l~~~-l-~~~-----~~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~ 585 (976)
||.. ++++|.++..++.. + ..+ -.++.-||..+..+|+.+...-...-+.++..+.+.+-
T Consensus 247 N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~ 319 (343)
T cd08050 247 NPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALL 319 (343)
T ss_pred CCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHc
Confidence 6552 24555566555321 1 111 15999999999999999887644445556656666554
No 130
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=38.60 E-value=7.4e+02 Score=29.40 Aligned_cols=46 Identities=17% Similarity=0.206 Sum_probs=30.2
Q ss_pred CCCHHhHHHHHHHHHHHHhcCChHH--HHHHHHHhhhHHHHHHHHHHh
Q 002041 591 KVSAEDSLHLVEALSMVITELPQVD--AKKALEMLCLPVVTPLQEIIN 636 (976)
Q Consensus 591 ~l~~~~~~~l~eai~~vi~~~p~~~--~~~~l~~ll~p~~~~l~~~~~ 636 (976)
.++..++..+++.++.+-..+..+. ..++++.++..++.-+...+.
T Consensus 423 ~~d~~~~~~i~~ii~~lw~~~~~~~v~~~~~l~~~~~~lL~l~~~~~~ 470 (559)
T PF14868_consen 423 TIDMKDQTFIVEIISQLWSFLSSKQVSSQPYLQQTLSLLLSLLSFFIQ 470 (559)
T ss_pred ccCHHHHHHHHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHHHHHH
Confidence 4667778888888888877764332 236767777666665555544
No 131
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.63 E-value=8.5e+02 Score=29.82 Aligned_cols=55 Identities=11% Similarity=0.108 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhh-cCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcC
Q 002041 550 TAAAAALAFRHICDDCRKKLC-GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 611 (976)
Q Consensus 550 v~~~A~~al~~l~~~~~~~L~-~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~ 611 (976)
-++.|+++++.|.+..|.... .-++++++.++.= .++++....+++.+..+++.-
T Consensus 39 DRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D-------~~D~E~ik~~LdTl~il~~~d 94 (970)
T KOG0946|consen 39 DRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRD-------YMDPEIIKYALDTLLILTSHD 94 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhc-------cCCHHHHHHHHHHHHHHHhcC
Confidence 588999999999999887665 5678888776552 367788888999998888774
No 132
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=37.61 E-value=5.6e+02 Score=27.75 Aligned_cols=64 Identities=16% Similarity=0.380 Sum_probs=35.9
Q ss_pred CCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCCccc
Q 002041 592 VSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEA 669 (976)
Q Consensus 592 l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 669 (976)
.+..+..-++.+|++++...|+|+..+.+.+++.-+ ..+... ..+ ...+..++.+|.++..|+|
T Consensus 58 ~~ekdle~vlnsi~sLi~~~~~e~~e~~v~a~~ekv-------a~q~n~----~~~---~l~L~vLsnLfn~~d~~~~ 121 (378)
T KOG2753|consen 58 IPEKDLECVLNSIVSLIKNAPPEKVEEMVKAICEKV-------AKQPND----KTA---SLRLQVLSNLFNGVDKPTP 121 (378)
T ss_pred CCcchHHHHHHHHHHHHHhCCHHHhHHHHHHHHHHH-------hcCccC----CCc---ccHHHHHHHHHhccCCCch
Confidence 455566777777777777777766555554444333 222211 011 1246667777777666655
No 133
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.55 E-value=8.8e+02 Score=30.00 Aligned_cols=185 Identities=9% Similarity=0.048 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhcHHHHhhCC-CCcchHHHHHHHHHcccCCChH-HHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHh
Q 002041 507 QLLQTVCLTIGAYSKWFDAAS-SDPSILASVLSILTSGMSTSED-TAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAV 584 (976)
Q Consensus 507 ~v~~t~~~~ig~y~~~~~~~p-~~~~~l~~~l~~l~~~l~~~~~-v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~ 584 (976)
.++..++..+ .+|+..+. ........++.....-+.+.+. |-..|..++..+|+--.+.+.| .+.+.|.+--
T Consensus 742 pik~~gL~~l---~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~---dL~e~Y~s~k 815 (982)
T KOG4653|consen 742 PIKGYGLQML---RHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILP---DLSEEYLSEK 815 (982)
T ss_pred cchHHHHHHH---HHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHH---HHHHHHHhcc
Confidence 4555555554 45666331 1112445677777666665432 6667788888888874443333 3333333322
Q ss_pred hccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhc
Q 002041 585 NGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYV 664 (976)
Q Consensus 585 ~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 664 (976)
.+...+.+.++=|+++.++.+.++ -...|...++.-.+ ..+..+ ..+.-+..+..+|.+++..
T Consensus 816 -----~k~~~d~~lkVGEai~k~~qa~Ge-l~~~y~~~Li~tfl----~gvrep-------d~~~RaSS~a~lg~Lcq~~ 878 (982)
T KOG4653|consen 816 -----KKLQTDYRLKVGEAILKVAQALGE-LVFKYKAVLINTFL----SGVREP-------DHEFRASSLANLGQLCQLL 878 (982)
T ss_pred -----cCCCccceehHHHHHHHHHHHhcc-HHHHHHHHHHHHHH----HhcCCc-------hHHHHHhHHHHHHHHHHHH
Confidence 234578899999999999999873 33355544444443 333321 1112234555666655544
Q ss_pred CCcccHHHHHHHHhHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 002041 665 NHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITI 717 (976)
Q Consensus 665 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l 717 (976)
.. .+.+++-++...+..+.+. .+...++.++..+++..+...|..+.|++
T Consensus 879 a~--~vsd~~~ev~~~Il~l~~~-d~s~~vRRaAv~li~~lL~~tg~dlLpil 928 (982)
T KOG4653|consen 879 AF--QVSDFFHEVLQLILSLETT-DGSVLVRRAAVHLLAELLNGTGEDLLPIL 928 (982)
T ss_pred hh--hhhHHHHHHHHHHHHHHcc-CCchhhHHHHHHHHHHHHhccchhhHHHH
Confidence 31 1112333333333333222 44556778888899998888887666654
No 134
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=35.91 E-value=1.2e+03 Score=31.03 Aligned_cols=54 Identities=7% Similarity=0.211 Sum_probs=43.8
Q ss_pred cHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCCh-HHHHHHHHHHHHHHHH
Q 002041 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDD 564 (976)
Q Consensus 505 ~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~ 564 (976)
+..||.++++++|+| +..+|+ +.+.....+..++.++- .|+-++.+=++.+|++
T Consensus 868 sasVREAaldLvGrf---vl~~~e---~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e 922 (1692)
T KOG1020|consen 868 SASVREAALDLVGRF---VLSIPE---LIFQYYDQIIERILDTGVSVRKRVIKILRDICEE 922 (1692)
T ss_pred hhHHHHHHHHHHhhh---hhccHH---HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHh
Confidence 467999999999987 567777 78888888877776653 5899999999999976
No 135
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=35.61 E-value=3.2e+02 Score=24.34 Aligned_cols=94 Identities=12% Similarity=0.223 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 002041 625 LPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKY 704 (976)
Q Consensus 625 ~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~v~e~~~~~~~~ 704 (976)
-.+++.+.+.+.+..- .+ ...+-...|..|+.+++..+ ..+..+..+++..+..-+ ..+++.+.+++++..
T Consensus 10 LGil~~f~~~l~d~~g--~~-~~~ek~~~i~ai~~lI~~~g--~~i~~a~pQI~acL~saL----~~~eL~~~al~~W~~ 80 (107)
T smart00802 10 LGILAVFSNILHDSSG--KK-PYNEKKRALRSIGFLIKLMG--KHISSALPQIMACLQSAL----EIPELRSLALRCWHV 80 (107)
T ss_pred HHHHHHHHHHHcCccc--CC-CHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh----CchhHHHHHHHHHHH
Confidence 3445556666654330 11 11112346777777777432 223333345555554444 346799999999999
Q ss_pred HHHHhhh-hhhhhHHHHHHHHHHH
Q 002041 705 AVRTSKR-FMGITIGAILEEIQGL 727 (976)
Q Consensus 705 ~~~~~~~-~~~~~l~~l~~~l~~~ 727 (976)
.++.+.+ ++.|++..++..+.+.
T Consensus 81 ~i~~L~~~~l~~ll~~~~~~i~~~ 104 (107)
T smart00802 81 LIKTLKEEELGPLLDQIFAAILPL 104 (107)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHh
Confidence 9988754 5667666666555443
No 136
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=34.48 E-value=74 Score=29.83 Aligned_cols=120 Identities=9% Similarity=0.059 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHH-hhhhhhhhHHHHHHHHHHHHhhcCCccHHHHHHHHHHHhCCC--Cc----chHHHHHHHHHHHH
Q 002041 694 TMESLCRACKYAVRT-SKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSD--PS----CASYLHNLIEALFK 766 (976)
Q Consensus 694 v~e~~~~~~~~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~~~--~~----~~~~l~~~~~~l~~ 766 (976)
|+.++|.++..++.. +...-..+++.+++.+... ......++.++..+.+.+++- .. -...+.+.+..-..
T Consensus 4 i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~~--~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~ 81 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQSS--PQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSP 81 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhhCchHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHH
Confidence 455666666665543 2222233455555543321 112234677888888877651 11 11223333333333
Q ss_pred HHHhhhcC-c-ccCCC-CCccHHHHHHHHHHHHhhCCCc-ccCcCChHHHHHH
Q 002041 767 RTTCLLTS-I-EEFTS-RPDVADDCFLLASRCIRYCPQL-FIPSSVFPSLVDC 815 (976)
Q Consensus 767 ~~~~~l~~-~-~~~~~-~pD~~~~~f~l~~~~~~~~p~~-~~~~~~l~~~~~~ 815 (976)
.+++.+.. . ..... +++++...++.+..++...|.. +..++.++.+++.
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~ 134 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQL 134 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHH
Confidence 33333322 1 11222 2778888888888888855533 3344444444443
No 137
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=34.41 E-value=4.1e+02 Score=25.15 Aligned_cols=74 Identities=12% Similarity=0.201 Sum_probs=47.8
Q ss_pred HHHHHHHcccCC--ChHHHHHHHHHHHHHHHHhhhhhhcCH--HHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhc
Q 002041 535 SVLSILTSGMST--SEDTAAAAALAFRHICDDCRKKLCGYL--DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (976)
Q Consensus 535 ~~l~~l~~~l~~--~~~v~~~A~~al~~l~~~~~~~L~~~l--~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (976)
.++..+-.-+.+ |+ ++..|-..+..+++.|+..+...+ ..|++.+..++.. ......+.++++-+-.-..+
T Consensus 37 ~a~ral~KRl~~~n~~-v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~----~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 37 DCLKAIMKRLNHKDPN-VQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLIND----RVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcc----cCCHHHHHHHHHHHHHHHHH
Confidence 444444444443 44 899999999999999998766433 3466777676653 24566677777666655555
Q ss_pred CCh
Q 002041 611 LPQ 613 (976)
Q Consensus 611 ~p~ 613 (976)
++.
T Consensus 112 f~~ 114 (144)
T cd03568 112 FKN 114 (144)
T ss_pred hCC
Confidence 543
No 138
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=34.24 E-value=48 Score=27.18 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=33.8
Q ss_pred hhhHHHHHHHHhhcccCcc----cccchHHHhhhccCCCCcHHHHHHHHHHHHhcHH
Q 002041 469 PAEAALFCIRAISTYVSVV----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSK 521 (976)
Q Consensus 469 ~~Ea~L~~l~~i~e~~~~~----~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~ 521 (976)
++-++||+++.++..-..- +.+.++.+++....-| ...+|.|++.++|-.+.
T Consensus 3 ~lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~-v~siRGT~fy~Lglis~ 58 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSP-VLSIRGTCFYVLGLISS 58 (73)
T ss_pred HHHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCC-ccchHHHHHHHHHHHhC
Confidence 4678999999998642211 2244555554443333 57899999999997653
No 139
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=33.31 E-value=8.7e+02 Score=29.91 Aligned_cols=126 Identities=20% Similarity=0.225 Sum_probs=80.4
Q ss_pred CCCHHHHHHHHHHHHHHhcChhH--HHHHHHHhhc-CCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHH
Q 002041 17 HPDDAVRMQADRWLQDFQHTIDA--WQVADNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKK 93 (976)
Q Consensus 17 ~~d~~~r~~A~~~L~~~q~s~~a--w~~~~~lL~~-~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~~ 93 (976)
..|.+.|+--.-||..+-+.... --.|..+..+ .+.++.+|-||.+++-. +.. ..|-..++..+.+
T Consensus 66 trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~--------l~~---~el~~~~~~~ik~ 134 (757)
T COG5096 66 TRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSL--------LRV---KELLGNIIDPIKK 134 (757)
T ss_pred hcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHh--------cCh---HHHHHHHHHHHHH
Confidence 45889999999999987775332 2234555543 24678899999999862 221 2233444555554
Q ss_pred hc-CCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhc-CCCCCcHHHHHHHHhhcccc
Q 002041 94 FH-KGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEM-NSHPEFVPGFLELLTVLPEE 154 (976)
Q Consensus 94 ~~-~~~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l-~~~~~~~~~~L~~L~~l~EE 154 (976)
.. .+..+||+..+.+++.++.... +-.++.++...+...+ .++|......+..|..+.+|
T Consensus 135 ~l~d~~ayVRk~Aalav~kly~ld~-~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 135 LLTDPHAYVRKTAALAVAKLYRLDK-DLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HccCCcHHHHHHHHHHHHHHHhcCH-hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 32 3578999999999999885332 2334322333334444 34566777888888888887
No 140
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=33.19 E-value=5.5e+02 Score=26.28 Aligned_cols=72 Identities=17% Similarity=0.109 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHH-------------------hhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcC
Q 002041 551 AAAAALAFRHICDD-------------------CRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 611 (976)
Q Consensus 551 ~~~A~~al~~l~~~-------------------~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~ 611 (976)
..+-++.+..+|+. .++.+..|++-++-.+....... .++.+.+..+..|+=.|+..+
T Consensus 112 a~~~aRlL~~l~ep~~~~~~~~~~~~l~~~~~~~k~~~~kh~~~lL~~Yi~~~~~~---~l~~~vr~~L~pGiy~l~d~~ 188 (223)
T PF10441_consen 112 AKAFARLLTNLCEPSSVSRSSKKTSSLTSATSSAKKSLRKHAPYLLANYISLQLKY---TLPPEVREALMPGIYALFDVC 188 (223)
T ss_pred HHHHHHHHHHHhCcccccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHhC
Confidence 45556666777755 34556678888887776665442 588999999999999999998
Q ss_pred ChHHHHHHHHHhhhH
Q 002041 612 PQVDAKKALEMLCLP 626 (976)
Q Consensus 612 p~~~~~~~l~~ll~p 626 (976)
+..+ .+++...+++
T Consensus 189 s~~e-~~~l~a~Ld~ 202 (223)
T PF10441_consen 189 SQHE-LQQLNASLDA 202 (223)
T ss_pred CHHH-HHHHHHHcCh
Confidence 8665 3444443433
No 141
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.92 E-value=1e+03 Score=29.25 Aligned_cols=268 Identities=9% Similarity=0.052 Sum_probs=124.8
Q ss_pred cHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHh
Q 002041 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAV 584 (976)
Q Consensus 505 ~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~ 584 (976)
+|.|..+++.+.-..+.-. -...+..-|++-|+.+..++...-..+..++..-+..+.||+..|+-.
T Consensus 300 n~sVVmA~aql~y~lAP~~--------~~~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~----- 366 (968)
T KOG1060|consen 300 NPSVVMAVAQLFYHLAPKN--------QVTKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVR----- 366 (968)
T ss_pred CcHHHHHHHhHHHhhCCHH--------HHHHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEee-----
Confidence 5666666655543333211 123334444444554444777777777888887777777887766511
Q ss_pred hccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhc
Q 002041 585 NGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYV 664 (976)
Q Consensus 585 ~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 664 (976)
. .-+......=++-+..++.... +..++..++..+.... .+-...+++.||.+....
T Consensus 367 -s----sDp~~vk~lKleiLs~La~esn-----------i~~ILrE~q~YI~s~d-------~~faa~aV~AiGrCA~~~ 423 (968)
T KOG1060|consen 367 -S----SDPTQVKILKLEILSNLANESN-----------ISEILRELQTYIKSSD-------RSFAAAAVKAIGRCASRI 423 (968)
T ss_pred -c----CCHHHHHHHHHHHHHHHhhhcc-----------HHHHHHHHHHHHhcCc-------hhHHHHHHHHHHHHHHhh
Confidence 0 0111222222344444444432 1233444555555432 122344666677665544
Q ss_pred CCcccHHHHHHHHhHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH-hhhh--hhhhHHHHHHHHHHHHhhcCCccHHHHHH
Q 002041 665 NHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRT-SKRF--MGITIGAILEEIQGLYQQHQQPCFLYLSS 741 (976)
Q Consensus 665 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~~v~e~~~~~~~~~~~~-~~~~--~~~~l~~l~~~l~~~~~~~~~~~~L~l~~ 741 (976)
.. +...++.-+..+++.. |.-|+....-++++++.. ...+ +.-.+-.+++.+... .--++.+|+++
T Consensus 424 ~s------v~~tCL~gLv~Llssh--de~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~lldti~vp---~ARA~IiWLig 492 (968)
T KOG1060|consen 424 GS------VTDTCLNGLVQLLSSH--DELVVAEAVVVIKRLLQKDPAEHLEILFQLARLLDTILVP---AARAGIIWLIG 492 (968)
T ss_pred Cc------hhhHHHHHHHHHHhcc--cchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhhhhhh---hhhceeeeeeh
Confidence 32 1234555555555543 555666666677776654 2222 111122222221111 11256777766
Q ss_pred HHHHHhCCCCcchHHHHHHHHHHHHHHHhhhcCcccCCCCCccHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHhcc
Q 002041 742 EVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGIT 821 (976)
Q Consensus 742 ~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~~~~l~~~~~~~~~~l~ 821 (976)
..+...-+ +...+.....+-+ .++.+++.-..+++..++.-..+.- +..+++++..--.
T Consensus 493 e~~e~vpr----------i~PDVLR~laksF-----s~E~~evKlQILnL~aKLyl~~~~~------~kll~~Yv~~L~~ 551 (968)
T KOG1060|consen 493 EYCEIVPR----------IAPDVLRKLAKSF-----SDEGDEVKLQILNLSAKLYLTNIDQ------TKLLVQYVFELAR 551 (968)
T ss_pred hhhhhcch----------hchHHHHHHHHhh-----ccccchhhHHHHHhhhhheEechhh------HHHHHHHHHHHhc
Confidence 65543221 1111122222222 2456666666677766665444332 3334444322112
Q ss_pred cCCchhHHHHHHHHHHhhc
Q 002041 822 VQHREASNSILTFLSDIFD 840 (976)
Q Consensus 822 ~~~~~~~~~~~~fl~~l~~ 840 (976)
-+-..-.|.-+.|+..++.
T Consensus 552 yD~sYDiRDRaRF~r~l~~ 570 (968)
T KOG1060|consen 552 YDLSYDIRDRARFLRQLIS 570 (968)
T ss_pred cCCCcchhHHHHHHHHHhc
Confidence 2222334556677777664
No 142
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.58 E-value=5e+02 Score=28.43 Aligned_cols=93 Identities=18% Similarity=0.216 Sum_probs=64.6
Q ss_pred CCCHHHHHHHHHHHHHHhc---------ChhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHH----
Q 002041 17 HPDDAVRMQADRWLQDFQH---------TIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGL---- 83 (976)
Q Consensus 17 ~~d~~~r~~A~~~L~~~q~---------s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~~~l---- 83 (976)
..+.+.|..|-+-|+.+-. +-++|......+.+ .+..+|-.||.++-..++++ |..+-..+
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~--~~~~lR~~Aa~Vigt~~qNN----P~~Qe~v~E~~~ 167 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLEN--SDAELRELAARVIGTAVQNN----PKSQEQVIELGA 167 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcC--CcHHHHHHHHHHHHHHHhcC----HHHHHHHHHccc
Confidence 4578888889888887665 45668777776654 67789999999999988865 33332222
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc
Q 002041 84 QDSLNTLLKKFHKGPPKVRTQISIAVAALAVHIS 117 (976)
Q Consensus 84 r~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~ 117 (976)
...|+..+. .+++.-+|+|.--+++.+..+..
T Consensus 168 L~~Ll~~ls--~~~~~~~r~kaL~AissLIRn~~ 199 (342)
T KOG2160|consen 168 LSKLLKILS--SDDPNTVRTKALFAISSLIRNNK 199 (342)
T ss_pred HHHHHHHHc--cCCCchHHHHHHHHHHHHHhcCc
Confidence 233333333 24577788998888888877544
No 143
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=30.43 E-value=2.9e+02 Score=35.09 Aligned_cols=123 Identities=17% Similarity=0.271 Sum_probs=70.1
Q ss_pred hhhHHHHHHh---hcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHH---hhcccCcccccchHHHhhhccCC
Q 002041 429 VADVLIDAAS---VLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRA---ISTYVSVVEAEVMPQVMALLPKL 502 (976)
Q Consensus 429 ~~d~l~~~~~---~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~L~~l~~---i~e~~~~~~~~~l~~l~~~l~~~ 502 (976)
..|++..+|. +.|++.++..+.+.+.+.+...+. ..+-.-.-||..+++- ++-.+. ...+|-+|..+..-
T Consensus 897 ~~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~-~sdp~Lq~AAtLaL~klM~iSa~fc---es~l~llftimeks 972 (1251)
T KOG0414|consen 897 LADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGL-FSDPELQAAATLALGKLMCISAEFC---ESHLPLLFTIMEKS 972 (1251)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCc-CCCHHHHHHHHHHHHHHhhhhHHHH---HHHHHHHHHHHhcC
Confidence 4444444442 345567888888888777643222 2222222355555553 333332 34567777766655
Q ss_pred CCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCCh-HHHHHHHHHHHHHH
Q 002041 503 PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHIC 562 (976)
Q Consensus 503 ~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~ 562 (976)
| .|.+|..++-.+|.++ ...|. ++.+--.++.+-++++. .|+..|...+..|.
T Consensus 973 p-~p~IRsN~VvalgDla---v~fpn---lie~~T~~Ly~rL~D~~~~vRkta~lvlshLI 1026 (1251)
T KOG0414|consen 973 P-SPRIRSNLVVALGDLA---VRFPN---LIEPWTEHLYRRLRDESPSVRKTALLVLSHLI 1026 (1251)
T ss_pred C-Cceeeecchheccchh---hhccc---ccchhhHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 5 6777877776666554 44554 66666677776666653 36666666666655
No 144
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=30.37 E-value=1.4e+03 Score=30.17 Aligned_cols=209 Identities=16% Similarity=0.113 Sum_probs=97.1
Q ss_pred HHHHHHhHHHHHHHHhh---cCCHHHHHHHHHHHHHHHHHhhhh---hhhhHHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 002041 672 DAIQRLWPIFKAIFDIR---AWDMRTMESLCRACKYAVRTSKRF---MGITIGAILEEIQGLYQQHQQPCFLYLSSEVIK 745 (976)
Q Consensus 672 ~~~~~~~~~l~~ll~~~---~~~~~v~e~~~~~~~~~~~~~~~~---~~~~l~~l~~~l~~~~~~~~~~~~L~l~~~li~ 745 (976)
...+.+.|+...+...+ ..|.+|.--+.-|+..++|-+.+. ..+.+-.+..++...|.-
T Consensus 41 ~~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~g--------------- 105 (1266)
T KOG1525|consen 41 LDLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSG--------------- 105 (1266)
T ss_pred hhHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhh---------------
Confidence 34467777777776553 234445444444555677765443 233444444444443321
Q ss_pred HhCCCC-cchHHHHHHHHHHHHHHHhhhcCcccCCCCCccHHHHHHHHHHHHh-hCCCcccCcCChHHHHHHHHHhcccC
Q 002041 746 IFGSDP-SCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIR-YCPQLFIPSSVFPSLVDCSMIGITVQ 823 (976)
Q Consensus 746 ~~~~~~-~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~-~~p~~~~~~~~l~~~~~~~~~~l~~~ 823 (976)
.|+.+ .+...-..+++++...-+.++. ...+.-|++.++|++...+++ .+|..++. +.+.+...+..-
T Consensus 106 -L~d~~sp~f~r~~~lletl~~~k~~l~~---~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~------~~~i~~~li~e~ 175 (1266)
T KOG1525|consen 106 -LGDVESPYFKRYFYLLETLAKVKFCLLM---LLEDCQELVHELFRTFFDLARKGHPKKVFN------MLDIAIMLITEE 175 (1266)
T ss_pred -ccCCCCcchhhHHHHHHHHHHhHHHhee---eccchHHHHHHHHHHHHHHHhccccHHHHH------HHHHHHHHHHhh
Confidence 12211 1222222333433322222222 123445688888888888885 56666543 334433333333
Q ss_pred CchhHHHHHHHHHHhhcccCCCCchhhHHHHHHHHhhchHH----HHHHHHHHcccCC--CCCCcccHHHHHHHHHHHhh
Q 002041 824 HREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGAS----ITRILIASLTGAL--PSSRLETVTYALLALTRAYG 897 (976)
Q Consensus 824 ~~~~~~~~~~fl~~l~~~~~~~~~~~~~~~~~~~~~~~g~~----lv~~ll~~l~~~~--~~~~~~~~~~~L~~l~~~~~ 897 (976)
+.......--.|.++++...+ ..++-......++.+.+.. +-.-+...+++.. -.+....+-++++.++.-.|
T Consensus 176 d~v~~e~L~~ll~~lv~~~~~-~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p 254 (1266)
T KOG1525|consen 176 DTVQSELLDVLLENLVKPGRD-TIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAP 254 (1266)
T ss_pred ccchHHHHHHHHHHhccCCCC-ccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhH
Confidence 333333334455555554321 1111111111222222211 1111222233333 23556678899999999888
Q ss_pred HHHHHHHHH
Q 002041 898 VRSLEWAKE 906 (976)
Q Consensus 898 ~~~~~wl~~ 906 (976)
..+..-+.+
T Consensus 255 ~ll~~vip~ 263 (1266)
T KOG1525|consen 255 QLLLAVIPQ 263 (1266)
T ss_pred HHHHHHHHH
Confidence 665554444
No 145
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=29.25 E-value=4.3e+02 Score=28.37 Aligned_cols=105 Identities=12% Similarity=0.217 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh---hHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCCCChhhH
Q 002041 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTI---DAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAV 80 (976)
Q Consensus 4 ~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~---~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~ 80 (976)
.+.|.++++.+-.-...+.....+.+|....++. ..|.....|+..--...--.||- ..-...+. ..........
T Consensus 2 ~~~~~~~l~~f~~~k~~~l~~~L~~il~~ia~tg~~~~~W~~lk~l~~~kl~~v~~e~~~-~~p~~~~~-~~~~~~~~~~ 79 (288)
T PF09184_consen 2 IEELLDALENFMKIKSKELPPELEDILEHIAKTGETWYPWSLLKSLFRHKLEKVIDEFFE-SAPEESGP-QNPNVEPEDY 79 (288)
T ss_pred hHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHHHHh-cCccccCC-CCCCcchhhH
Confidence 3567788888765444566678888888877763 35877777775411111112220 00001111 1223444567
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 002041 81 RGLQDSLNTLLKKFHKGPPKVRTQISIAVAA 111 (976)
Q Consensus 81 ~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~ 111 (976)
..++..+..++..|.. +++...|||..|..
T Consensus 80 ~~~~~~~~~~~~~f~~-~PfTiqRlcEl~~~ 109 (288)
T PF09184_consen 80 EEMKERILELLDSFDE-PPFTIQRLCELLLD 109 (288)
T ss_pred HHHHHHHHHHHHhcCC-CChhHHHHHHHHhC
Confidence 8899999999998877 88999999988754
No 146
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.10 E-value=1.1e+03 Score=28.39 Aligned_cols=130 Identities=15% Similarity=0.155 Sum_probs=74.4
Q ss_pred CCCcchhhHHHHHHHHhhcccCccc----------cc----c-hHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCC
Q 002041 464 HNEWRPAEAALFCIRAISTYVSVVE----------AE----V-MPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASS 528 (976)
Q Consensus 464 ~~~w~~~Ea~L~~l~~i~e~~~~~~----------~~----~-l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~ 528 (976)
+-+|- +...|-.++--|+.++++- ++ + -..+++.+..-..|..+.+.+-+++|.|+..+..+|.
T Consensus 438 Dy~Wy-VdviLqLiriagd~vsdeVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~pr 516 (938)
T KOG1077|consen 438 DYSWY-VDVILQLIRIAGDYVSDEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPR 516 (938)
T ss_pred Ccchh-HHHHHHHHHHhcccccHHHHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCC
Confidence 56785 8888888888787776541 11 1 2345555544335888999999999999999999886
Q ss_pred CcchHHHHHHHHHcccCCCh-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHH
Q 002041 529 DPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALS 605 (976)
Q Consensus 529 ~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~ 605 (976)
.. -...+..+.+-++... ..+..--....+|+.. .|.+..-++.+.+...+ .++.+-|.+.+|=+-
T Consensus 517 ss--~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl-----~PEi~~~v~~vFq~~~n----~~D~ElQqRa~EYLq 583 (938)
T KOG1077|consen 517 SS--PAVQFSLLHEKLHLCSPVTRALLLTTYIKLINL-----FPEIKSNVQKVFQLYSN----LIDVELQQRAVEYLQ 583 (938)
T ss_pred CC--hHHHHHHHHHHhccCChhHHHHHHHHHHHHHhh-----ChhhhHHHHHHHHhhcc----cCCHHHHHHHHHHHH
Confidence 21 1222344445454332 1233333344555543 24444444333333222 255666766666553
No 147
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=27.99 E-value=9.6e+02 Score=27.47 Aligned_cols=69 Identities=7% Similarity=0.020 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHhhcCC---ccHHHHHHHHHHHhCCCCcchHHHHH
Q 002041 690 WDMRTMESLCRACKYAVRTSK-RFMGITIGAILEEIQGLYQQHQQ---PCFLYLSSEVIKIFGSDPSCASYLHN 759 (976)
Q Consensus 690 ~~~~v~e~~~~~~~~~~~~~~-~~~~~~l~~l~~~l~~~~~~~~~---~~~L~l~~~li~~~~~~~~~~~~l~~ 759 (976)
.|.+..-.+...+.+++..+. +.+.+.+|.+...++++|..... -+.++++-.++...|.++ +.|.+.+
T Consensus 418 ~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~-mePhL~~ 490 (516)
T KOG2956|consen 418 ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEE-MEPHLEQ 490 (516)
T ss_pred CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHh-hhhHhhh
Confidence 445555556666677776543 45678889999999999986443 457889999999999432 4454443
No 148
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=27.03 E-value=3.5e+02 Score=26.07 Aligned_cols=83 Identities=18% Similarity=0.096 Sum_probs=50.0
Q ss_pred HHHHHHHHHHcccCCCCCCcccHHHHHHHHHHHhhHHHH---HHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCCchh
Q 002041 863 ASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSL---EWAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNA 939 (976)
Q Consensus 863 ~~lv~~ll~~l~~~~~~~~~~~~~~~L~~l~~~~~~~~~---~wl~~~l~~~p~~~~~~~~k~~f~~~l~~~~~~~~~~~ 939 (976)
..++..++..+....+. ....+.++|..+.+++|.... .=+...++.++ .++.+....+++++.... +
T Consensus 54 ~~Ile~l~~rI~~~s~~-~~~~~idlL~~lv~~~p~~vle~~~~l~~~ld~l~--~lp~~~a~~ll~Al~PLi------~ 124 (158)
T PF14676_consen 54 SEILEQLLNRIVTKSSS-PSSQYIDLLSELVRKAPLTVLECSSKLKELLDYLS--FLPGDVAIGLLRALLPLI------K 124 (158)
T ss_dssp HHHHHHHHHHHHH--SS---HHHHHHHHHHHHH-HHHHS-S-HHHHGGGGGTT--TS-HHHHHHHHHHHHHHH------T
T ss_pred HHHHHHHHHHHHhcCcc-chhHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHH------h
Confidence 44555566666443333 335789999999999996543 33444555665 467888999999998875 2
Q ss_pred hhHHHHHHH-HHHHhh
Q 002041 940 AMAPVEELS-DVCRRN 954 (976)
Q Consensus 940 ~~~~l~~F~-~~cr~~ 954 (976)
++..++|-. ..+||.
T Consensus 125 ~s~~lrd~lilvLRKa 140 (158)
T PF14676_consen 125 FSPSLRDSLILVLRKA 140 (158)
T ss_dssp T-HHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 334444543 466666
No 149
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=26.82 E-value=7e+02 Score=25.50 Aligned_cols=130 Identities=15% Similarity=0.092 Sum_probs=67.1
Q ss_pred CCCCCccHHHHHHHHHHHHhhCCCcccC-cCChHHHHHHHHHhccc-----------CCchh--HHHHHHHHHHhhcccC
Q 002041 778 FTSRPDVADDCFLLASRCIRYCPQLFIP-SSVFPSLVDCSMIGITV-----------QHREA--SNSILTFLSDIFDLAK 843 (976)
Q Consensus 778 ~~~~pD~~~~~f~l~~~~~~~~p~~~~~-~~~l~~~~~~~~~~l~~-----------~~~~~--~~~~~~fl~~l~~~~~ 843 (976)
....+++=....+++..++++++..+.. -+.+-.+++..+.++.. ...+. .++...+++.+.+...
T Consensus 48 ~~~~~~if~~~~~ll~~il~~hr~~l~~r~hll~~~l~~LL~~l~~~~~~~~~~~~~~s~~~~~a~~~aRlL~~l~ep~~ 127 (223)
T PF10441_consen 48 ADSSPSIFISLCRLLSSILRHHRFKLSGRFHLLLSVLQRLLRCLFSPNSQRSSKQLGLSAEAEEAKAFARLLTNLCEPSS 127 (223)
T ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHcCCChHHHHHHHHHHHHHHhcCccccccccccchhhHHHHHHHHHHHHHhCccc
Confidence 3445556666667778888887776654 23444444444433330 11122 4455555665554310
Q ss_pred ---C-CCc---hhhHHHHHHHHhhchHHHHHHHHHHc-ccCCCCCCcccHHHHHHHHHHHhhHHHHHHHHHH
Q 002041 844 ---S-CKG---EEFLSVRDSVIIPRGASITRILIASL-TGALPSSRLETVTYALLALTRAYGVRSLEWAKES 907 (976)
Q Consensus 844 ---~-~~~---~~~~~~~~~~~~~~g~~lv~~ll~~l-~~~~~~~~~~~~~~~L~~l~~~~~~~~~~wl~~~ 907 (976)
. ... ..-.......+..|-+.++.+-+... .+.+++.+-+.+..-++++.-.+++.-.+.+..+
T Consensus 128 ~~~~~~~~~~l~~~~~~~k~~~~kh~~~lL~~Yi~~~~~~~l~~~vr~~L~pGiy~l~d~~s~~e~~~l~a~ 199 (223)
T PF10441_consen 128 VSRSSKKTSSLTSATSSAKKSLRKHAPYLLANYISLQLKYTLPPEVREALMPGIYALFDVCSQHELQQLNAS 199 (223)
T ss_pred ccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 0 000 01112355566667777766666664 4455555556666666666655554445544443
No 150
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=26.05 E-value=1.4e+03 Score=29.22 Aligned_cols=100 Identities=14% Similarity=0.201 Sum_probs=53.0
Q ss_pred CCcchhhHHHHHHHHhhcccCcccccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHccc
Q 002041 465 NEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGM 544 (976)
Q Consensus 465 ~~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l 544 (976)
-+|++.|..-|++.++++.-.-.. .+-......+.-+++|-.|+.-| .+..++.-+..|+
T Consensus 657 l~W~D~e~~~yli~~~~k~w~iky---------------~~i~~lA~llaGL~~y~~~fvi~-----VID~vlE~Ir~gl 716 (1128)
T KOG2051|consen 657 LDWSDPEVKQYLISCFSKPWKIKY---------------QNIHALASLLAGLSSYHPEFVIH-----VIDHVLEDIRPGL 716 (1128)
T ss_pred cccccHHHHHHHHHHhhhhhcccc---------------ccHHHHHHHHHHHHhhchhhhhh-----hHHHHHHHHHhhh
Confidence 478888888888888775422110 01122222333344666777766 7889999999999
Q ss_pred CCChHHHHHHHHHHHHHHH-HhhhhhhcCHHHHHHHHHHHhh
Q 002041 545 STSEDTAAAAALAFRHICD-DCRKKLCGYLDGLYNVYRTAVN 585 (976)
Q Consensus 545 ~~~~~v~~~A~~al~~l~~-~~~~~L~~~l~~ll~~~~~~~~ 585 (976)
.....+..+=+.|..++.. -|--++. ....|++.+..++.
T Consensus 717 Ein~~~~nQrriA~aryL~ELynfemv-ds~vIl~tLy~~i~ 757 (1128)
T KOG2051|consen 717 EINDYVSNQRRIALARYLGELYNFEMV-DSDVILNTLYHLIS 757 (1128)
T ss_pred hcCcHHHHHHHHHHHHHHHHHhhhhhh-hHHHHHHHHHHHhc
Confidence 8543233333333333332 2221221 12335555555554
No 151
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=25.97 E-value=9.1e+02 Score=26.57 Aligned_cols=141 Identities=11% Similarity=0.073 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHHHHHHH-hhhh-------hhhhHHHHHHHHHHHHhhcCCccHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 002041 691 DMRTMESLCRACKYAVRT-SKRF-------MGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIE 762 (976)
Q Consensus 691 ~~~v~e~~~~~~~~~~~~-~~~~-------~~~~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~ 762 (976)
+-+..-.++.++..+++. .|.. +...-|.++..+..+|... ..++.+ +.|+..+-+.+. ....++.
T Consensus 89 ~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~--dial~~-g~mlRec~k~e~---l~~~iL~ 162 (335)
T PF08569_consen 89 DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENP--DIALNC-GDMLRECIKHES---LAKIILY 162 (335)
T ss_dssp -HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGST--TTHHHH-HHHHHHHTTSHH---HHHHHHT
T ss_pred CCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCc--cccchH-HHHHHHHHhhHH---HHHHHhC
Confidence 345555666666666653 2322 2222367777778888743 234444 444444444432 2222222
Q ss_pred HHHHHHHhhhcCcccCCCCCccHHHHHHHHHHHHhhCCCcccC--cCChHHHHHHHHHhcccCCchhHHHHHHHHHHhhc
Q 002041 763 ALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIP--SSVFPSLVDCSMIGITVQHREASNSILTFLSDIFD 840 (976)
Q Consensus 763 ~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~--~~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~l~~ 840 (976)
. .....++... -..+=|+..+-|.-...++.+++..+-. ...++.++..-..-+.+.+-.+.|-+++++.+++.
T Consensus 163 ~--~~f~~ff~~~--~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~elll 238 (335)
T PF08569_consen 163 S--ECFWKFFKYV--QLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLL 238 (335)
T ss_dssp S--GGGGGHHHHT--TSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHH
T ss_pred c--HHHHHHHHHh--cCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHH
Confidence 1 1112222211 1345568888888888888777754322 33466677655566778888899999999999996
Q ss_pred c
Q 002041 841 L 841 (976)
Q Consensus 841 ~ 841 (976)
.
T Consensus 239 d 239 (335)
T PF08569_consen 239 D 239 (335)
T ss_dssp S
T ss_pred c
Confidence 3
No 152
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=25.81 E-value=8e+02 Score=26.17 Aligned_cols=53 Identities=4% Similarity=0.068 Sum_probs=34.5
Q ss_pred hHHHHHHHHHcccCCCh-HHHHHHHHHHHHHHHHhhhhh----h--cCHHHHHHHHHHHh
Q 002041 532 ILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKL----C--GYLDGLYNVYRTAV 584 (976)
Q Consensus 532 ~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~L----~--~~l~~ll~~~~~~~ 584 (976)
+++-+++.++.-+++.. .++..++..+..|.+.+.... . +..+.+.+.+.+.+
T Consensus 116 ~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L 175 (282)
T PF10521_consen 116 HWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCL 175 (282)
T ss_pred hhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHh
Confidence 45555555555556542 499999999999999876543 2 44555555555554
No 153
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=25.60 E-value=4.7e+02 Score=24.96 Aligned_cols=64 Identities=14% Similarity=0.018 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHH
Q 002041 18 PDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLL 91 (976)
Q Consensus 18 ~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l 91 (976)
.|++..+++.+.|.... +-.-.-|+++|...-.+..||.||-..|+ +.+.++....--+|++.|
T Consensus 51 ~~~~~~~e~~~lL~~W~--~~~~~~aL~LL~~~~~~~~vr~yAv~~L~--------~~~~~~l~~ylpQLVQaL 114 (152)
T cd00864 51 NDDEEVSELYQLLKWWA--PLSPEDALELLSPKYPDPVVRQYAVRVLE--------SASDDELLLYLPQLVQAL 114 (152)
T ss_pred CCHHHHHHHHHHHhcCC--CCCHHHHHHHcCCcCCCHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHHH
Confidence 56667777777666642 33344677788654456778888877776 345555444444444544
No 154
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=25.53 E-value=1.7e+03 Score=29.70 Aligned_cols=165 Identities=11% Similarity=0.069 Sum_probs=102.5
Q ss_pred CccHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHhcccCCchhHHHHHHHHHHhhcccCCCCchhhHHHHHHHHhhc
Q 002041 782 PDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPR 861 (976)
Q Consensus 782 pD~~~~~f~l~~~~~~~~p~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~l~~~~~~~~~~~~~~~~~~~~~~~ 861 (976)
|++-+.+=.++.+..... .-+++..+..++++.+.++...+++......+=+.+++....+....--..++.+++.++
T Consensus 839 ~~l~~~~~~~~~~~~s~~--t~FPakql~~il~~~~~~~~~~~~~~~~~~~~pl~~l~~~y~~g~~~H~~~v~~~Lle~Y 916 (2196)
T KOG0368|consen 839 PNLDKSLESLVAKSASRI--TQFPAKQLAKILDAHLATLNRAEREVLFVNIQPLLKLVSRYSGGLEAHAKEVVHDLLEEY 916 (2196)
T ss_pred hhHHHHHHHHHHHHhhhc--ccCcHHHHHHHHHHHhhccccccchhhhhhhhHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 555555555666666543 256666789999999888888888888888888888887543321110112333333322
Q ss_pred hHHHHHHHHHHcccCCCCCCcccHHHHHHHHHHHhhHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcC---CCch
Q 002041 862 GASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAASG---VDVN 938 (976)
Q Consensus 862 g~~lv~~ll~~l~~~~~~~~~~~~~~~L~~l~~~~~~~~~~wl~~~l~~~p~~~~~~~~k~~f~~~l~~~~~~---~~~~ 938 (976)
.. |.++|.+. .+ ...+++..|-..+...+..-+..+++ . ..-..|++++..|+...+. +...
T Consensus 917 l~--VEk~F~~~-----~~---~~e~~i~~lr~~~~~d~~kVv~~i~S---H--s~i~~KN~Lv~~ll~~l~~~s~~~~~ 981 (2196)
T KOG0368|consen 917 LE--VEKLFNGR-----DS---HYEDVILRLREENKKDLKKVVDIILS---H--SQIKSKNKLVLALLDQLKPPSSKVSD 981 (2196)
T ss_pred HH--HHHHhccC-----cc---hHHHHHHHHHHhhhhHHHHHHHHHHc---c--hhhhhhhHHHHHHHHHhcCCCCCCCH
Confidence 11 45555432 12 45577778887777767776666553 1 2234578888888877655 5567
Q ss_pred hhhHHHHHHHHHHHh-----h-hhHHHHHHh
Q 002041 939 AAMAPVEELSDVCRR-----N-RTVQEIVQG 963 (976)
Q Consensus 939 ~~~~~l~~F~~~cr~-----~-~~~~~~~~~ 963 (976)
.|+..++++...-.. . ++.+.+++.
T Consensus 982 ~f~~iL~~l~~L~~~~~~eVal~Ar~iLi~~ 1012 (2196)
T KOG0368|consen 982 EFRDILRKLTELNHTNTSEVALKARQILIQS 1012 (2196)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHhC
Confidence 889999998874433 2 445556544
No 155
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=25.17 E-value=2.4e+02 Score=25.64 Aligned_cols=65 Identities=12% Similarity=0.099 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhHHHHH---------HHHhhcCCCchHHHHHHHHHHHHHhhcCCC
Q 002041 7 VKEALNALYHHPDDAVRMQADRWLQDFQH-TIDAWQVA---------DNLLHDATSNLETLIFCSQTLRSKVQRDVE 73 (976)
Q Consensus 7 v~~al~~ly~~~d~~~r~~A~~~L~~~q~-s~~aw~~~---------~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~ 73 (976)
+...+..+..+.|+....-|=.-|.+|-+ .|++=.++ ..|+.+ .+++||+-|.++++..+..+|.
T Consensus 45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h--~d~eVr~eAL~avQklm~~~w~ 119 (119)
T PF11698_consen 45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNH--EDPEVRYEALLAVQKLMVNNWE 119 (119)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS---SSHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhcCC
Confidence 44444455445577666666666666544 46665554 556654 6889999999999999998884
No 156
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=25.09 E-value=1.2e+03 Score=27.73 Aligned_cols=83 Identities=19% Similarity=0.322 Sum_probs=47.6
Q ss_pred hhhHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcccccchHHHhhhcc--CCCCcH
Q 002041 429 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP--KLPQQP 506 (976)
Q Consensus 429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~--~~~~~~ 506 (976)
...++.|+....|....+..+.+.+.+. .-...|++=. +..+...+.....+.+..+++++. ..+.++
T Consensus 342 ~r~~~~Dal~~~GT~~a~~~i~~~i~~~---------~~~~~ea~~~-~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~ 411 (574)
T smart00638 342 ARRIFLDAVAQAGTPPALKFIKQWIKNK---------KITPLEAAQL-LAVLPHTARYPTEEILKALFELAESPEVQKQP 411 (574)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcC---------CCCHHHHHHH-HHHHHHhhhcCCHHHHHHHHHHhcCccccccH
Confidence 4466777778888877888777766531 1222333322 222333333333456666766653 334577
Q ss_pred HHHHHHHHHHHhcHH
Q 002041 507 QLLQTVCLTIGAYSK 521 (976)
Q Consensus 507 ~v~~t~~~~ig~y~~ 521 (976)
.++.+++..+|....
T Consensus 412 ~l~~sa~l~~~~lv~ 426 (574)
T smart00638 412 YLRESALLAYGSLVR 426 (574)
T ss_pred HHHHHHHHHHHHHHH
Confidence 788877777766554
No 157
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=25.01 E-value=1.1e+02 Score=21.44 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=16.7
Q ss_pred HHcccCCC-hHHHHHHHHHHHHHHH
Q 002041 540 LTSGMSTS-EDTAAAAALAFRHICD 563 (976)
Q Consensus 540 l~~~l~~~-~~v~~~A~~al~~l~~ 563 (976)
|.+.+.++ .+++..|+.||.++|.
T Consensus 17 Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 17 LVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 33334443 3599999999999873
No 158
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=24.05 E-value=1.4e+03 Score=28.08 Aligned_cols=101 Identities=14% Similarity=0.162 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHhcC-ChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCCcccHHHHH
Q 002041 596 DSLHLVEALSMVITEL-PQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI 674 (976)
Q Consensus 596 ~~~~l~eai~~vi~~~-p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 674 (976)
+...++|++|.+..-- |+......++. ..+++-+.+.+......+ ..+...+-.+|++.. .+ .++..+
T Consensus 504 ~ee~~vE~LGiLaNL~~~~ld~~~ll~~--~~llp~L~~~L~~g~~~d-----Dl~LE~Vi~~gtla~---d~-~~A~lL 572 (708)
T PF05804_consen 504 SEEFVVECLGILANLTIPDLDWAQLLQE--YNLLPWLKDLLKPGASED-----DLLLEVVILLGTLAS---DP-ECAPLL 572 (708)
T ss_pred cHHHHHHHHHHHHhcccCCcCHHHHHHh--CCHHHHHHHHhCCCCCCh-----HHHHHHHHHHHHHHC---CH-HHHHHH
Confidence 4568888998776553 33344455543 245555666665432211 111122233333332 12 233332
Q ss_pred --HHHhHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 002041 675 --QRLWPIFKAIFDIRAWDMRTMESLCRACKYAVR 707 (976)
Q Consensus 675 --~~~~~~l~~ll~~~~~~~~v~e~~~~~~~~~~~ 707 (976)
..+.+.+-.++.....|.+++=.++.++.+.+.
T Consensus 573 ~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~ 607 (708)
T PF05804_consen 573 AKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLF 607 (708)
T ss_pred HhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHc
Confidence 367788888888888888888887777776664
No 159
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=24.00 E-value=1.5e+03 Score=33.22 Aligned_cols=171 Identities=10% Similarity=0.075 Sum_probs=92.2
Q ss_pred HHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCcc
Q 002041 563 DDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEIL 642 (976)
Q Consensus 563 ~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~ 642 (976)
.+-.+.+.||+..|+.....+.... -.+..-..++.++=+-|...-.+....-+-.++.++++.++..+.....
T Consensus 621 ~~nervl~phv~~Ii~~smela~~a----~eplnYf~LLraLFRsigGg~~d~ly~e~lplL~~lLe~ln~l~~~~~s-- 694 (3550)
T KOG0889|consen 621 SENERVLRPHVHDIISTSMELATTA----PEPLNYFQLLRALFRSIGGGAFDSLYREVLPLLPNLLEILNHLLSSFHS-- 694 (3550)
T ss_pred ccchhhcccchhHHHHHHHHHHhcC----CcchhHHHHHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHhhccCc--
Confidence 3444678899999998876665431 1233455666666555555544444444556677777777777665432
Q ss_pred cccCcchhhhHHHHHHHHhhhcCCcccHHHHHHHHhHHHH-HHHHhhcCCHHHHHHHHHHHHHHHHHhhh-h----hhhh
Q 002041 643 QKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFK-AIFDIRAWDMRTMESLCRACKYAVRTSKR-F----MGIT 716 (976)
Q Consensus 643 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~-~ll~~~~~~~~v~e~~~~~~~~~~~~~~~-~----~~~~ 716 (976)
...+++-..+ |++.=+| ...+.-.+|.+. .+.......++++-...+.+..++-.+-+ + +.|.
T Consensus 695 --~~mkdLfvEL-clTvPvR--------LS~Llpylp~LM~PLv~aLkgs~~lvsQgLRtlelcvDnltPefL~~~mepv 763 (3550)
T KOG0889|consen 695 --QGMKDLFVEL-CLTLPVR--------LSSLLPYLPLLMKPLVFALKGSPELVSQGLRTLELCVDNLTPEFLDPIMEPV 763 (3550)
T ss_pred --cchHHHHHHH-HHhhhHH--------HHHhhhhhhhhhhHHHHHhcCCHHHHHHHHhHHHHHHhcCChHhhhHHHHHH
Confidence 1234431111 1111011 011111222222 22233456678888888888888776533 3 3444
Q ss_pred HHHHHHHHHHHHhhcCCccHHHHHHHHHHHhCCC
Q 002041 717 IGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSD 750 (976)
Q Consensus 717 l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~~~ 750 (976)
.+.+++-+....+..|..++-..+..+.+++|..
T Consensus 764 ~~~lmqaLw~~l~~~~~~s~s~~a~rILGKlgG~ 797 (3550)
T KOG0889|consen 764 RDDLMQALWSHLRPVPNYSYSHRALRILGKLGGR 797 (3550)
T ss_pred HHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCc
Confidence 4445555555555544456666777788888864
No 160
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.84 E-value=6e+02 Score=30.96 Aligned_cols=131 Identities=11% Similarity=0.116 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcc--cccchHHHhhhccCC
Q 002041 425 MLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV--EAEVMPQVMALLPKL 502 (976)
Q Consensus 425 ~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~--~~~~l~~l~~~l~~~ 502 (976)
|++++-|++.++..-.. + .-+.-...|-+.+ .+.+..+-+.+.+.-+|...+.. .+.++..+.+.+---
T Consensus 408 ~K~aivd~Ii~iie~~p-d-sKe~~L~~LCefI-------EDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLE 478 (865)
T KOG1078|consen 408 FKRAIVDAIIDIIEENP-D-SKERGLEHLCEFI-------EDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILE 478 (865)
T ss_pred HHHHHHHHHHHHHHhCc-c-hhhHHHHHHHHHH-------HhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhh
Q ss_pred CCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCCh-HHHHHHHHHHHHHHHHhhhhhhcC
Q 002041 503 PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGY 572 (976)
Q Consensus 503 ~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~L~~~ 572 (976)
+..+|..+..++.+|. ...+. ..+++...+-+++.++. .++.+|..++..+-+.-.....++
T Consensus 479 --n~ivRaaAv~alaKfg---~~~~~---l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~~~~l~~~~ 541 (865)
T KOG1078|consen 479 --NAIVRAAAVSALAKFG---AQDVV---LLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEKDDVLNQNY 541 (865)
T ss_pred --hhhhHHHHHHHHHHHh---cCCCC---ccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhhhhhhcccc
No 161
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.70 E-value=2.1e+02 Score=31.23 Aligned_cols=88 Identities=17% Similarity=0.154 Sum_probs=50.7
Q ss_pred chHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCCh-HHHHHHHHHHHHHHHHhhhhh
Q 002041 491 VMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKL 569 (976)
Q Consensus 491 ~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~L 569 (976)
-+|.+++.++. .++.+++.++..||..+---.+.....+--|.+++.+..-++++. +++-.|..|++.+..+.+-..
T Consensus 209 ~lpvLVsll~s--~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~ 286 (550)
T KOG4224|consen 209 GLPVLVSLLKS--GDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQR 286 (550)
T ss_pred Cchhhhhhhcc--CChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhh
Confidence 35555555443 267788888888876643111110000112345555666666653 599999999999998765433
Q ss_pred --h--cCHHHHHHHH
Q 002041 570 --C--GYLDGLYNVY 580 (976)
Q Consensus 570 --~--~~l~~ll~~~ 580 (976)
. .-++.++..+
T Consensus 287 eiv~ag~lP~lv~Ll 301 (550)
T KOG4224|consen 287 EIVEAGSLPLLVELL 301 (550)
T ss_pred HHHhcCCchHHHHHH
Confidence 2 4555555554
No 162
>KOG4820 consensus Involved in anesthetic response in C.elegans [General function prediction only]
Probab=23.51 E-value=1.9e+02 Score=32.90 Aligned_cols=114 Identities=17% Similarity=0.262 Sum_probs=55.8
Q ss_pred HHHHhcHHHHhhC---CCC---cchHHHHHHHHHcccCCCh---HHHHHHHHHHHHHHH---------HhhhhhhcCHHH
Q 002041 514 LTIGAYSKWFDAA---SSD---PSILASVLSILTSGMSTSE---DTAAAAALAFRHICD---------DCRKKLCGYLDG 575 (976)
Q Consensus 514 ~~ig~y~~~~~~~---p~~---~~~l~~~l~~l~~~l~~~~---~v~~~A~~al~~l~~---------~~~~~L~~~l~~ 575 (976)
..+|||.-|+-.- |.. ...+..+++.++..++... .-...--.++.++-. .||-+-.-|+..
T Consensus 460 q~LgRfGiWLlaG~C~Pnada~~eaiGrIlqmlF~WFhtTA~~~daagqmeasiEkLKtD~VcdWikd~cRiH~~VFISc 539 (933)
T KOG4820|consen 460 QMLGRFGIWLLAGLCPPNADADPEAIGRILQMLFEWFHTTALLPDAAGQMEASIEKLKTDFVCDWIKDGCRIHNAVFISC 539 (933)
T ss_pred HHHhhhhHhheeccCCCCCCCCHHHHHHHHHHHHHHHhhhhcCcCchhhhhhhHHHHhhHHHHHHHHHHHhHhhhhhhhh
Confidence 4689999998541 211 1467788888887776432 011111222333322 123222223333
Q ss_pred HHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHH-HHHHHhhhHH
Q 002041 576 LYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAK-KALEMLCLPV 627 (976)
Q Consensus 576 ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~-~~l~~ll~p~ 627 (976)
+..........++-+.--......+-||+|++|.-+|.+.+. .....++..-
T Consensus 540 L~~~~~E~a~~gghwe~lasr~dhiKEGL~RLi~LmPYdVIs~EiWd~VMPhW 592 (933)
T KOG4820|consen 540 LCGECEEQAGRGGHWEPLASRIDHIKEGLGRLIALMPYDVISLEIWDRVMPHW 592 (933)
T ss_pred hcCCChhhcCcCCCccchHHHHHHHHHHHhhhhhhcchhhhhHHHHHhHhHHH
Confidence 332222221111111111223456789999999999988664 4555444433
No 163
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.74 E-value=1.5e+03 Score=27.80 Aligned_cols=70 Identities=10% Similarity=0.099 Sum_probs=56.0
Q ss_pred cHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCChH-HHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHH
Q 002041 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSED-TAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTA 583 (976)
Q Consensus 505 ~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~~-v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~ 583 (976)
+..+|..+++.+.+.- .|+ ++.+.++.+..+++|++. |+.-|.-|+..+-+. ..+|.|..+.++..+...
T Consensus 112 NEyiRG~TLRFLckLk-----E~E---Llepl~p~IracleHrhsYVRrNAilaifsIyk~-~~~L~pDapeLi~~fL~~ 182 (948)
T KOG1058|consen 112 NEYIRGSTLRFLCKLK-----EPE---LLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN-FEHLIPDAPELIESFLLT 182 (948)
T ss_pred hHhhcchhhhhhhhcC-----cHH---HhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh-hhhhcCChHHHHHHHHHh
Confidence 4589999999998763 466 899999999999988763 888888888887775 678999999888766443
No 164
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=21.65 E-value=5.3e+02 Score=22.23 Aligned_cols=84 Identities=21% Similarity=0.110 Sum_probs=49.5
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccc
Q 002041 39 AWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISA 118 (976)
Q Consensus 39 aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~~ 118 (976)
..+-+..-|++ ..+.+|-.|..+|++.|.++- .+......+-+-+++.+.. ..++|-=.-...|++++-..+
T Consensus 4 ~~~~al~~L~d--p~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d---~DsyVYL~aI~~L~~La~~~p- 75 (92)
T PF10363_consen 4 TLQEALSDLND--PLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKD---EDSYVYLNAIKGLAALADRHP- 75 (92)
T ss_pred HHHHHHHHccC--CCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCC---CCchHHHHHHHHHHHHHHHCh-
Confidence 34456666665 345699999999999998764 3333444444444444433 445554445566777765432
Q ss_pred cccCCccchHHHHHhcC
Q 002041 119 EDWGGGGIVNWLRDEMN 135 (976)
Q Consensus 119 ~~W~~~~~~~~l~~~l~ 135 (976)
+. .++.+++...
T Consensus 76 ----~~-vl~~L~~~y~ 87 (92)
T PF10363_consen 76 ----DE-VLPILLDEYA 87 (92)
T ss_pred ----HH-HHHHHHHHHh
Confidence 21 5666665543
No 165
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=20.87 E-value=6.3e+02 Score=23.59 Aligned_cols=76 Identities=7% Similarity=0.094 Sum_probs=46.3
Q ss_pred hHHHHHHHHHcccCCCh-HHHHHHHHHHHHHHHHhhhhhhcCH--HHHHHHHHHHhhccCCCCCCHH---hHHHHHHHHH
Q 002041 532 ILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYL--DGLYNVYRTAVNGEGSLKVSAE---DSLHLVEALS 605 (976)
Q Consensus 532 ~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~L~~~l--~~ll~~~~~~~~~~~~~~l~~~---~~~~l~eai~ 605 (976)
.-..++..+-.-+.++. .++..|-..+-.+++.|+..+...+ ..|++.+..++... .... .+.++++-+.
T Consensus 39 ~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~----~~~~~~~Vk~k~l~ll~ 114 (140)
T PF00790_consen 39 GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSK----KTDPETPVKEKILELLQ 114 (140)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHT----TTHHHSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccC----CCCchhHHHHHHHHHHH
Confidence 34456666655555432 4899999999999999988765332 33666666655432 2222 5666666665
Q ss_pred HHHhcC
Q 002041 606 MVITEL 611 (976)
Q Consensus 606 ~vi~~~ 611 (976)
.-...+
T Consensus 115 ~W~~~f 120 (140)
T PF00790_consen 115 EWAEAF 120 (140)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 544444
No 166
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.46 E-value=1.2e+03 Score=26.89 Aligned_cols=163 Identities=10% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcccccchHHHhhhcc--CCCCcHHHHH
Q 002041 433 LIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP--KLPQQPQLLQ 510 (976)
Q Consensus 433 l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~--~~~~~~~v~~ 510 (976)
+...+...++..+..++.+...... +..|..+=...--+..+...-.-.....+.+++.++. .-.+...+|.
T Consensus 203 lqr~m~~~~~~~~~~il~q~~ss~t------s~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~ 276 (533)
T KOG2032|consen 203 LQRFMACVQDLEMGKILAQLLSSIT------SEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRG 276 (533)
T ss_pred HHHHHHhhCCccHHHHHhhcccccc------hhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHH
Q ss_pred HHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCCh--HHHHHHHHHHHHHHHHhhh-hhhcCHHHHHHHHHHHhhcc
Q 002041 511 TVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE--DTAAAAALAFRHICDDCRK-KLCGYLDGLYNVYRTAVNGE 587 (976)
Q Consensus 511 t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~--~v~~~A~~al~~l~~~~~~-~L~~~l~~ll~~~~~~~~~~ 587 (976)
.+|..+|..+.. .+.....+-+.++..+..|+-++. +|+-.|-.+|..+.+.... .+.+|+-++--.+.++...
T Consensus 277 ~a~r~L~~~as~--~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~s- 353 (533)
T KOG2032|consen 277 MACRGLGNTASG--APDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDS- 353 (533)
T ss_pred HHHHHHHHHhcc--CcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHh-
Q ss_pred CCCCCCHHhHHHHHHHHHHHH
Q 002041 588 GSLKVSAEDSLHLVEALSMVI 608 (976)
Q Consensus 588 ~~~~l~~~~~~~l~eai~~vi 608 (976)
...+-|...+-..|.+.
T Consensus 354 ----e~~~~R~aa~~Lfg~L~ 370 (533)
T KOG2032|consen 354 ----EDDKMRAAAFVLFGALA 370 (533)
T ss_pred ----cChhhhhhHHHHHHHHH
No 167
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=20.32 E-value=8.1e+02 Score=23.93 Aligned_cols=90 Identities=7% Similarity=0.168 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhcChhHHHHH----HHHhhcC-C--------CchHHHHHHHHHHHHHhhcCCC-CCChhhHHHHHHHH
Q 002041 22 VRMQADRWLQDFQHTIDAWQVA----DNLLHDA-T--------SNLETLIFCSQTLRSKVQRDVE-ELPSEAVRGLQDSL 87 (976)
Q Consensus 22 ~r~~A~~~L~~~q~s~~aw~~~----~~lL~~~-~--------~~~~v~ffaa~~L~~ki~~~w~-~l~~~~~~~lr~~L 87 (976)
.+..+++.+-++++.-.|..+. ..++++. + ..++++|--.|.+..-+-..|+ +++-+....|-..+
T Consensus 120 ~k~kqe~e~s~L~k~vtAL~iIk~~YEqM~~~~qdnp~~~e~~~~d~~kf~vfQ~imd~~F~sF~~~i~~~~f~~lT~~i 199 (229)
T KOG1319|consen 120 EKKKQEEEVSTLRKDVTALKIIKVNYEQMVKAHQDNPHEGEDQVSDQVKFNVFQGIMDSLFQSFNASISVASFQELTACV 199 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 4556666777777666666553 3444321 1 1346888888888776665565 48888999999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHH
Q 002041 88 NTLLKKFHKGPPKVRTQISIAVAAL 112 (976)
Q Consensus 88 l~~l~~~~~~~~~v~~kL~~~La~l 112 (976)
+.|+...+. |...|+-++..+..+
T Consensus 200 ~sWvEehck-p~~lr~i~~g~l~qM 223 (229)
T KOG1319|consen 200 FSWIEEHCK-PQTLREIVIGVLHQM 223 (229)
T ss_pred HHHHHHhCC-cccHHHHHHHHHHHc
Confidence 999988654 444555555555443
No 168
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=20.30 E-value=7.3e+02 Score=23.35 Aligned_cols=72 Identities=8% Similarity=0.149 Sum_probs=43.5
Q ss_pred HHHHHHHcccC--CChHHHHHHHHHHHHHHHHhhhhhhcCH--HHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhc
Q 002041 535 SVLSILTSGMS--TSEDTAAAAALAFRHICDDCRKKLCGYL--DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (976)
Q Consensus 535 ~~l~~l~~~l~--~~~~v~~~A~~al~~l~~~~~~~L~~~l--~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (976)
.++..+-+-+. ++. ++..|-..+..+++.|+..+...+ ..|++.+..++.. ..+...+.++++-+-.-..+
T Consensus 41 ~a~ral~krl~~~n~~-vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~----~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 41 YAMRALKKRLLSKNPN-VQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT----TKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHHcCCChH-HHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc----cCCHHHHHHHHHHHHHHHHH
Confidence 44444444443 345 899999999999999988765332 3366666665542 24455566666655444444
Q ss_pred C
Q 002041 611 L 611 (976)
Q Consensus 611 ~ 611 (976)
+
T Consensus 116 f 116 (142)
T cd03569 116 F 116 (142)
T ss_pred h
Confidence 3
No 169
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=20.01 E-value=1.7e+03 Score=27.45 Aligned_cols=85 Identities=12% Similarity=0.185 Sum_probs=49.4
Q ss_pred ccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCC--cchHHHHHHHHHcccCCChHHHHHHHHHHHHHHH--H
Q 002041 489 AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSD--PSILASVLSILTSGMSTSEDTAAAAALAFRHICD--D 564 (976)
Q Consensus 489 ~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~--~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~--~ 564 (976)
+..++.+..+++. .|..++..++.++...+.--...+.. ..++|.++.++ .+++ .+..|...|+.++. +
T Consensus 330 ~giV~kL~kLl~s--~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL----~d~~-~~~val~iLy~LS~dd~ 402 (708)
T PF05804_consen 330 SGIVEKLLKLLPS--ENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELL----KDPN-FREVALKILYNLSMDDE 402 (708)
T ss_pred cCCHHHHHHHhcC--CCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHh----CCCc-hHHHHHHHHHHhccCHh
Confidence 3566777766653 37788888899888776421111110 02555555555 4555 66678888888885 3
Q ss_pred hhhhhh--cCHHHHHHHH
Q 002041 565 CRKKLC--GYLDGLYNVY 580 (976)
Q Consensus 565 ~~~~L~--~~l~~ll~~~ 580 (976)
++..+. .-++.+++.+
T Consensus 403 ~r~~f~~TdcIp~L~~~L 420 (708)
T PF05804_consen 403 ARSMFAYTDCIPQLMQML 420 (708)
T ss_pred hHHHHhhcchHHHHHHHH
Confidence 555444 2344444443
Done!