Query 002041
Match_columns 976
No_of_seqs 200 out of 1514
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 09:52:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002041.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002041hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x1g_F Cadmus; transport prote 100.0 2.2E-91 7.4E-96 889.9 71.8 887 4-954 6-966 (971)
2 3ibv_A Exportin-T; karyopherin 100.0 8.4E-89 2.9E-93 846.2 68.7 878 4-954 5-978 (980)
3 2x19_B Importin-13; nuclear tr 100.0 1.2E-86 4.3E-91 846.9 89.0 887 3-954 22-954 (963)
4 4hat_C Exportin-1; heat repeat 100.0 1.9E-85 6.6E-90 815.2 71.0 879 4-954 15-1007(1023)
5 3gjx_A Exportin-1; transport, 100.0 5.5E-85 1.9E-89 804.0 69.8 919 4-972 27-1069(1073)
6 3m1i_C Exportin-1; heat repeat 100.0 1.3E-75 4.3E-80 747.1 70.7 890 4-954 15-1007(1049)
7 3a6p_A Exportin-5; exportin-5, 100.0 4.1E-62 1.4E-66 623.2 47.6 888 3-954 9-1160(1204)
8 1wa5_C Importin alpha RE-expor 100.0 1.2E-37 4.1E-42 393.9 57.0 728 1-839 1-790 (960)
9 4fdd_A Transportin-1; heat rep 100.0 8.2E-36 2.8E-40 373.6 54.9 768 3-929 11-820 (852)
10 2bpt_A Importin beta-1 subunit 100.0 4.9E-33 1.7E-37 350.1 58.7 695 1-821 1-733 (861)
11 1qgr_A Protein (importin beta 100.0 1.1E-28 3.7E-33 311.1 60.5 693 7-822 3-745 (876)
12 1ibr_B P95, importin beta-1 su 99.9 5.3E-23 1.8E-27 238.8 27.3 431 7-545 3-461 (462)
13 1u6g_C TIP120 protein, CAND1; 99.8 2E-15 6.9E-20 196.4 46.2 667 4-841 5-722 (1230)
14 4fdd_A Transportin-1; heat rep 99.7 4E-14 1.4E-18 177.0 51.3 623 193-931 105-782 (852)
15 1w9c_A CRM1 protein, exportin 99.5 5E-12 1.7E-16 131.9 28.9 227 714-953 68-318 (321)
16 2bpt_A Importin beta-1 subunit 99.5 1.7E-09 6E-14 135.3 57.0 402 314-799 367-813 (861)
17 1qgr_A Protein (importin beta 99.5 6.3E-10 2.2E-14 139.6 50.0 346 464-841 339-723 (876)
18 1u6g_C TIP120 protein, CAND1; 99.3 3.1E-08 1.1E-12 128.8 44.7 558 183-840 10-637 (1230)
19 1b3u_A Protein (protein phosph 99.2 5.7E-08 2E-12 115.7 41.0 562 4-704 9-584 (588)
20 1b3u_A Protein (protein phosph 99.1 8.4E-08 2.9E-12 114.2 36.2 493 180-800 49-551 (588)
21 2vgl_B AP-2 complex subunit be 98.3 0.00029 1E-08 83.3 30.6 461 15-606 58-529 (591)
22 1ibr_B P95, importin beta-1 su 98.2 4.7E-05 1.6E-09 87.2 19.4 267 466-749 143-441 (462)
23 1wa5_C Importin alpha RE-expor 98.0 0.0054 1.8E-07 77.1 35.8 159 466-627 471-646 (960)
24 1w63_A Adapter-related protein 98.0 0.022 7.5E-07 67.4 38.0 463 17-607 81-575 (618)
25 2qk1_A Protein STU2; STU2P, XM 97.9 5.3E-05 1.8E-09 78.5 11.9 185 464-665 27-223 (249)
26 2qk2_A LP04448P; mini spindles 97.8 0.00018 6.2E-09 74.4 12.9 178 464-665 26-208 (242)
27 2x1g_F Cadmus; transport prote 97.7 0.015 5.1E-07 73.2 32.5 300 507-841 436-761 (971)
28 1w63_A Adapter-related protein 97.4 0.24 8.2E-06 58.4 35.5 229 465-722 119-357 (618)
29 2qk1_A Protein STU2; STU2P, XM 97.4 0.0037 1.3E-07 64.4 16.2 165 464-635 72-246 (249)
30 2qk2_A LP04448P; mini spindles 97.3 0.0088 3E-07 61.4 18.7 187 505-720 28-219 (242)
31 2vgl_A Adaptor protein complex 97.2 0.64 2.2E-05 54.7 35.2 129 16-153 84-216 (621)
32 2x19_B Importin-13; nuclear tr 97.1 0.022 7.4E-07 71.7 22.5 297 508-840 423-752 (963)
33 4hat_C Exportin-1; heat repeat 97.1 0.048 1.6E-06 68.0 24.6 317 504-842 465-835 (1023)
34 2vgl_B AP-2 complex subunit be 97.0 0.14 4.7E-06 60.2 27.0 209 465-708 98-312 (591)
35 1wa5_B Importin alpha subunit; 97.0 0.08 2.7E-06 61.4 24.6 331 192-611 101-459 (530)
36 4b8j_A Importin subunit alpha- 97.0 0.76 2.6E-05 52.9 32.7 385 223-707 76-496 (528)
37 2jdq_A Importin alpha-1 subuni 96.9 0.1 3.5E-06 58.8 23.9 334 192-610 34-391 (450)
38 1wa5_B Importin alpha subunit; 96.8 0.39 1.3E-05 55.4 28.7 330 464-841 98-458 (530)
39 4b8j_A Importin subunit alpha- 96.8 0.2 6.8E-06 57.9 25.6 331 464-841 85-444 (528)
40 3ibv_A Exportin-T; karyopherin 96.7 0.11 3.6E-06 64.7 23.5 86 545-639 712-797 (980)
41 3m1i_C Exportin-1; heat repeat 96.5 0.15 5.1E-06 64.5 23.7 320 504-842 465-835 (1049)
42 3gjx_A Exportin-1; transport, 96.5 0.089 3E-06 65.4 20.3 315 505-842 492-861 (1073)
43 2vgl_A Adaptor protein complex 96.4 2 7E-05 50.3 30.8 223 465-707 123-358 (621)
44 2jdq_A Importin alpha-1 subuni 96.0 0.56 1.9E-05 52.5 22.6 332 465-840 32-390 (450)
45 2z6g_A B-catenin; FULL-length, 95.6 1 3.5E-05 54.6 23.9 289 7-339 117-422 (780)
46 2z6g_A B-catenin; FULL-length, 95.6 6 0.00021 47.8 32.8 255 13-301 157-428 (780)
47 3ul1_B Importin subunit alpha- 95.1 3.3 0.00011 47.3 24.8 314 490-842 100-432 (510)
48 3tpo_A Importin subunit alpha- 94.4 4.7 0.00016 46.2 24.2 310 490-842 119-451 (529)
49 3u0r_A Apoptosis inhibitor 5; 93.8 8.5 0.00029 42.2 22.2 268 505-805 41-366 (507)
50 3tpo_A Importin subunit alpha- 93.5 13 0.00045 42.4 29.9 220 465-706 263-496 (529)
51 3ul1_B Importin subunit alpha- 93.4 13 0.00045 42.2 29.0 218 464-706 243-477 (510)
52 2iw3_A Elongation factor 3A; a 93.2 4.1 0.00014 49.7 20.8 240 471-745 70-320 (986)
53 4hxt_A De novo protein OR329; 93.1 1.5 5E-05 44.3 14.9 218 465-708 14-242 (252)
54 1xqr_A HSPBP1 protein; armadil 92.4 9.8 0.00034 39.6 20.3 151 490-663 81-239 (296)
55 2of3_A ZYG-9; multifunctional 92.3 1.4 4.7E-05 45.0 12.9 136 328-523 99-238 (266)
56 2iw3_A Elongation factor 3A; a 92.0 0.57 1.9E-05 57.2 11.2 208 429-708 115-325 (986)
57 4hxt_A De novo protein OR329; 90.9 5.3 0.00018 40.0 16.2 221 7-251 4-244 (252)
58 4db6_A Armadillo repeat protei 90.6 0.89 3E-05 44.7 9.5 138 464-610 23-168 (210)
59 1oyz_A Hypothetical protein YI 90.6 17 0.00057 37.2 21.9 214 7-247 25-249 (280)
60 4db8_A Armadillo-repeat protei 90.1 3.4 0.00012 41.7 13.8 217 464-704 23-248 (252)
61 2z6h_A Catenin beta-1, beta-ca 90.0 34 0.0012 40.0 37.3 135 466-614 196-341 (644)
62 1w9c_A CRM1 protein, exportin 90.0 5 0.00017 41.9 14.5 147 193-348 44-199 (321)
63 1xqr_A HSPBP1 protein; armadil 88.4 1.2 4E-05 46.8 8.7 134 465-611 94-240 (296)
64 3ltj_A Alpharep-4; protein eng 86.2 5.6 0.00019 38.5 11.9 109 464-607 56-165 (201)
65 2z6h_A Catenin beta-1, beta-ca 86.1 58 0.002 38.0 36.4 256 12-301 20-292 (644)
66 4db6_A Armadillo repeat protei 85.6 4.2 0.00014 39.6 10.7 133 464-607 65-207 (210)
67 4db8_A Armadillo-repeat protei 85.3 1.7 6E-05 44.0 7.9 133 465-610 66-210 (252)
68 1xm9_A Plakophilin 1; armadill 82.7 64 0.0022 35.8 25.7 349 465-840 14-449 (457)
69 3a6p_A Exportin-5; exportin-5, 82.6 1.1E+02 0.0039 38.6 33.0 95 468-564 148-277 (1204)
70 3now_A UNC-45 protein, SD10334 81.5 97 0.0033 37.0 33.0 229 474-725 268-546 (810)
71 1jdh_A Beta-catenin; beta-cate 74.4 1.1E+02 0.0039 34.0 38.2 134 466-613 199-343 (529)
72 1oyz_A Hypothetical protein YI 72.2 35 0.0012 34.7 13.0 117 464-607 102-219 (280)
73 2db0_A 253AA long hypothetical 65.9 91 0.0031 29.5 15.3 199 464-705 43-244 (253)
74 3ltm_A Alpha-REP4; protein eng 64.0 1E+02 0.0035 29.4 16.2 172 7-205 21-201 (211)
75 4atg_A TAF6; transcription, TF 63.4 1.1E+02 0.0036 29.4 14.8 159 447-635 10-180 (196)
76 4ffb_C Protein STU2; tubulin f 59.7 85 0.0029 31.8 12.9 188 593-800 22-215 (278)
77 1jdh_A Beta-catenin; beta-cate 56.9 2.4E+02 0.0081 31.3 36.8 257 10-301 21-295 (529)
78 3ltm_A Alpha-REP4; protein eng 56.2 74 0.0025 30.4 11.2 55 10-67 85-139 (211)
79 3ltj_A Alpharep-4; protein eng 54.5 89 0.003 29.5 11.4 55 10-67 80-134 (201)
80 4ady_A RPN2, 26S proteasome re 51.4 2.1E+02 0.0073 34.6 15.6 104 469-585 594-698 (963)
81 3nmw_A APC variant protein; AR 49.4 2.6E+02 0.0089 29.5 16.2 220 467-706 46-291 (354)
82 2db0_A 253AA long hypothetical 47.5 22 0.00075 33.6 4.9 120 473-610 127-247 (253)
83 3oc3_A Helicase MOT1, MOT1; re 44.6 1.5E+02 0.0051 33.5 11.6 101 469-586 244-345 (800)
84 2of3_A ZYG-9; multifunctional 43.9 2.7E+02 0.0091 28.1 16.8 168 52-250 58-238 (266)
85 3oc3_A Helicase MOT1, MOT1; re 41.1 1.6E+02 0.0056 33.1 11.3 166 464-663 185-366 (800)
86 1te4_A Conserved protein MTH18 39.6 72 0.0025 27.9 7.3 51 13-66 49-99 (131)
87 3nmw_A APC variant protein; AR 39.6 1.6E+02 0.0054 31.2 11.2 140 465-613 183-338 (354)
88 3l6x_A Catenin delta-1; cateni 33.8 5.7E+02 0.02 29.0 28.4 372 446-862 50-488 (584)
89 3tt9_A Plakophilin-2; cell adh 31.2 2.4E+02 0.0084 27.7 10.2 133 465-605 64-225 (233)
90 2npp_B PP2A, B subunit, serine 29.9 4.7E+02 0.016 28.5 12.9 49 854-902 355-407 (449)
91 3nmz_A APC variant protein; pr 29.1 2.6E+02 0.0089 30.8 11.1 141 465-612 299-453 (458)
92 3gs3_A Symplekin, LD45768P; he 28.9 4.3E+02 0.015 26.3 11.6 105 1-114 11-119 (257)
93 4ffb_C Protein STU2; tubulin f 28.7 4.1E+02 0.014 26.5 12.0 136 466-613 68-216 (278)
94 4atg_A TAF6; transcription, TF 28.5 3.9E+02 0.013 25.4 13.2 130 443-579 39-179 (196)
95 3tjz_B Coatomer subunit gamma; 27.2 1.3E+02 0.0043 32.0 7.7 98 465-575 80-180 (355)
96 1te4_A Conserved protein MTH18 24.5 1.2E+02 0.0042 26.3 6.1 49 14-65 81-129 (131)
97 1vsy_4 Proteasome activator BL 21.0 1.1E+03 0.037 27.9 30.3 370 511-907 144-605 (799)
98 3b2a_A TON_1937, putative unch 20.8 6.2E+02 0.021 25.0 14.3 188 30-250 25-220 (265)
No 1
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=2.2e-91 Score=889.86 Aligned_cols=887 Identities=20% Similarity=0.349 Sum_probs=733.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHH
Q 002041 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGL 83 (976)
Q Consensus 4 ~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~~~l 83 (976)
+++|+++++.+| ++|++.|++|++||++||++|++|.+|.+||.. +.+.++|||||++|+++|+++|..++++++..+
T Consensus 6 ~~~l~~~l~~~~-~~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~-~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~i 83 (971)
T 2x1g_F 6 IARLEEAVVSFY-RSNSQNQAITHEWLTDAEASPQAWQFSWQLMQL-GKSQEVQFFGAITLHSKLMKHWHEVPPENREEL 83 (971)
T ss_dssp -----CTHHHHH-TSTTTC----CHHHHHTTTSTHHHHHHHHHTCT-TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHH
Confidence 567999999976 468889999999999999999999999999976 678899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC-------CCCcHHHHHHHHhhcccccc
Q 002041 84 QDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS-------HPEFVPGFLELLTVLPEEVF 156 (976)
Q Consensus 84 r~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l~~-------~~~~~~~~L~~L~~l~EE~~ 156 (976)
|+.+++++.+...+++.||+|+|.+++.++.+.++ .||+ +++++.+.+++ ++.....++.+|+.++||+.
T Consensus 84 r~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~--~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~ 160 (971)
T 2x1g_F 84 KQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPG--AIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQ 160 (971)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C--------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccH--HHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHh
Confidence 99999999987667899999999999999999998 9999 99999988865 23467899999999999987
Q ss_pred cccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhhh----------HHHHHHHHHHHHhhhccCCCCCcccccchhHHHH
Q 002041 157 NYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----------ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTA 226 (976)
Q Consensus 157 ~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~----------~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~~ 226 (976)
+.+ +..||..+++.+..+++.|++++..+++.. ++...+++|+.+|+.++ .+|.+ ...++++.+
T Consensus 161 ~~~---~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~-~ip~~--~~~~ll~~l 234 (971)
T 2x1g_F 161 VIH---TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNI-GYTIE--GCVTITAVL 234 (971)
T ss_dssp HCC---CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHS-CCCGG--GHHHHHHHH
T ss_pred ccC---cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhC-CcCcc--ccccHHHHH
Confidence 544 456788888999999999999998887642 57899999999999952 25655 557889988
Q ss_pred HhcC------------------CCcchHHHHHHHHHHHhhhhccCCCCCccCchhHHHHHHHHHHhhHHHhhh--ccCC-
Q 002041 227 LSSL------------------HSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTD--SSKD- 285 (976)
Q Consensus 227 ~~~L------------------~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~v~~l~~~~~~--~~~d- 285 (976)
+. | .+++++++|++|+.++++.... .++.+++..++|.+.++...+.. .++|
T Consensus 235 ~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~ 307 (971)
T 2x1g_F 235 LE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDC------HNYPKTAFVLIKMFLDSLSEITKTEWKREN 307 (971)
T ss_dssp HH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGG------GGCHHHHHHHHHHHHHHHHHHHHHHSSSSC
T ss_pred Hh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccc------cccHHHHHHHHHHHHHhHHHHHHHHhcccc
Confidence 87 6 4678999999999999986431 24677888888888776655432 3444
Q ss_pred --HHHHHHHHHHHHHHhhHHHHHHh----c----CCchhHHHHHHHHhhccC----C-CcchhhhhHHHHHHHHHHhccc
Q 002041 286 --EEDVKAIARLFADMGDSYVELIA----T----GSDESMLIVHALLEVASH----P-EYDIASMTFNFWHSLQVILTKR 350 (976)
Q Consensus 286 --~e~~~~~~~l~~~~~~~~~~~l~----~----~~~~~~~ll~~lL~~~~~----~-~~~vs~~~l~fW~~l~~~l~~~ 350 (976)
++..+.+|++++.+|+.+...+. + .++.+..+++.|+.++.+ + +++++..+++||+.+++.....
T Consensus 308 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~ 387 (971)
T 2x1g_F 308 DNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAM 387 (971)
T ss_dssp SCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhc
Confidence 37888999999999999888776 3 224577889999998876 3 7899999999999999854321
Q ss_pred ccccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCC--CCCCChhhhHHhHhhhhcccccCCccchhhhhhhh
Q 002041 351 DSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIA 428 (976)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~d--~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~ 428 (976)
. .+ .+....+..++|++.+++++++.|+.||+| +++||.+|+++|.+||+.
T Consensus 388 ~------~~----~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~----------------- 440 (971)
T 2x1g_F 388 S------ND----EQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQD----------------- 440 (971)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHH-----------------
T ss_pred c------cc----cchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHH-----------------
Confidence 0 00 001234567899999999999999999975 457888888999999999
Q ss_pred hhhHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcccccchHHHhhhccCCC-C--c
Q 002041 429 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLP-Q--Q 505 (976)
Q Consensus 429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~~~~-~--~ 505 (976)
++|++.+++.++| +.+++.+.+.+.+.+.+....+.+|+.+||++|+++++++++..+..+.++++++.+++++ . |
T Consensus 441 ~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~ 519 (971)
T 2x1g_F 441 ISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLN 519 (971)
T ss_dssp HHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSC
T ss_pred HHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccC
Confidence 9999999999999 6788888888877664211113789999999999999999998877788999999777666 3 8
Q ss_pred HHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhh
Q 002041 506 PQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN 585 (976)
Q Consensus 506 ~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~ 585 (976)
|.||.++|+++|+|++|+..||+ ++++++++++++++ +. |+.+||.||.+||++|+..|.||++++++.+.++++
T Consensus 520 ~~vr~~a~~~l~~~~~~l~~~~~---~l~~vl~~l~~~l~-~~-v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~ 594 (971)
T 2x1g_F 520 VKLLGTALETMGSYCNWLMENPA---YIPPAINLLVRGLN-SS-MSAQATLGLKELCRDCQLQLKPYADPLLNACHASLN 594 (971)
T ss_dssp HHHHHHHHHHHHHTHHHHC-------CHHHHHHHHHHHHH-SS-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHhC-hH-HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHc
Confidence 99999999999999999999987 89999999999995 66 999999999999999999999999999999999987
Q ss_pred ccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcC
Q 002041 586 GEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN 665 (976)
Q Consensus 586 ~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 665 (976)
.+ .++.+++..+++++|.++.++|+++..+++..++.|+++.++++.++...+ +.........+++++++++.++
T Consensus 595 ~~---~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~--~~~~~~~~~~l~~L~~~~~~l~ 669 (971)
T 2x1g_F 595 TG---RMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKT--PAARIRTIFRLNMISTLFSSLN 669 (971)
T ss_dssp ST---TSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---C--HHHHHHHHHHHHHHHHHHHHHT
T ss_pred CC---CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--hhhHHHHHHHHHHHHHHHhhcC
Confidence 53 477899999999999999999877888999999999999999987654311 1112345678899999998875
Q ss_pred C-----------cccHHHHHHHHhHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCCc
Q 002041 666 H-----------PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQP 734 (976)
Q Consensus 666 ~-----------~~~~~~~~~~~~~~l~~ll~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 734 (976)
. ++++.++.+++||++..+++.+..+.+++|++|.+++++++++|..+.|++|++++.+...|+.++++
T Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~~ 749 (971)
T 2x1g_F 670 TDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCCA 749 (971)
T ss_dssp C-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CCH
T ss_pred CCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCch
Confidence 3 46788899999999999999988889999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhhhcCc--ccCCCCCccHHHHHHHHHHHHhhCCCcccCcCC-hHH
Q 002041 735 CFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSI--EEFTSRPDVADDCFLLASRCIRYCPQLFIPSSV-FPS 811 (976)
Q Consensus 735 ~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~--~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~~~~-l~~ 811 (976)
|++++++.++..||.++.+.+.+.+++..++.+++.++.+. +.++++||++++||+|+.++++++|..+++++. +..
T Consensus 750 ~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~ 829 (971)
T 2x1g_F 750 PTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDR 829 (971)
T ss_dssp HHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHH
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHH
Confidence 99999999999999987788999999999999999888753 356789999999999999999999999999898 999
Q ss_pred HHHHHHHhcccCCchhHHHHHHHHHHhhcccCCCCchhhHHHHHHHHhhchHHHHHHHHHHcccCCCCCCcccHHHHHHH
Q 002041 812 LVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLA 891 (976)
Q Consensus 812 ~~~~~~~~l~~~~~~~~~~~~~fl~~l~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~~~~~~~~~~~~L~~ 891 (976)
++++++.+++.+|+++.+++++||..++++.. . .+.+++++.++|+.|+..++.+++|..||+.+++++++|++
T Consensus 830 i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~~~--~----~~~~~~~~~~~g~~l~~~l~~~~~~~~~~s~~~~~a~~l~~ 903 (971)
T 2x1g_F 830 LVFYAQRGMTLPESGAIRNSIQFLTHFVMQSR--N----HAHVTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADILLA 903 (971)
T ss_dssp HHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT--T----CHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGGGGHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC--c----hHHHHHHHHHhHHHHHHHHHHHhcccCChhHHHHHHHHHHH
Confidence 99999999999999999999999999998732 1 23588999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHh--hCCCCCCCHHHHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHHhh
Q 002041 892 LTRAYGVRSLEWAKESVS--LIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRN 954 (976)
Q Consensus 892 l~~~~~~~~~~wl~~~l~--~~p~~~~~~~~k~~f~~~l~~~~~~~~~~~~~~~l~~F~~~cr~~ 954 (976)
+..++|+++++||.+++. .+|+..+++++|++|+++|++.+ .++|+||+.+++||..|||.
T Consensus 904 l~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~f~~~l~~~~--~~~r~~~~~~~~f~~~~r~~ 966 (971)
T 2x1g_F 904 MNRKYAAEMAVWMKSLMSTPNFPTQLITDADKTRYTALIIKEK--VNKRLLQQHLSEMAMKTRGL 966 (971)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSCSCSSSCHHHHHHHHHHHHHCS--SCHHHHHHHHHHHHHHHHC-
T ss_pred HHHHCcHHHHHHHHHHhcccCCCCCcCCHHHHHHHHHHHHHHH--hChHhHHHHHHHHHHHHcCc
Confidence 999999999999999985 79998999999999999998754 36899999999999999986
No 2
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=8.4e-89 Score=846.20 Aligned_cols=878 Identities=14% Similarity=0.208 Sum_probs=680.3
Q ss_pred HHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCC-chHHHHHHHHHHHHHhhcCCCCCChh---
Q 002041 4 QNTVKEALNALYH-HPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATS-NLETLIFCSQTLRSKVQRDVEELPSE--- 78 (976)
Q Consensus 4 ~~~v~~al~~ly~-~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~-~~~v~ffaa~~L~~ki~~~w~~l~~~--- 78 (976)
.++|++||...|+ ++|++.|++|++||++||++|++|++|..+|.+++. ++++||||+++|+++|+ .++++
T Consensus 5 ~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----~l~~e~~~ 80 (980)
T 3ibv_A 5 AQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR----EWNNESNL 80 (980)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH----HCCTTTSH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH----hCChhhhH
Confidence 5789999976665 458999999999999999999999999999987443 78999999999999999 78999
Q ss_pred -hHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC-C-CcHHHHHHHHhhccc
Q 002041 79 -AVRGLQDSLNTLLKKFH--KGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH-P-EFVPGFLELLTVLPE 153 (976)
Q Consensus 79 -~~~~lr~~Ll~~l~~~~--~~~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l~~~-~-~~~~~~L~~L~~l~E 153 (976)
++..+|+.+++++.+.+ .+|++||+|+|.+++.++++.+|..||+ +++++++.++++ + .....+|++|..|+|
T Consensus 81 ~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~--~i~~l~~~~~~~~~~~~~~~~LriL~~i~E 158 (980)
T 3ibv_A 81 LELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWND--FFASLQGVIAASSQSEFSNFYLKVLLSIGD 158 (980)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTT--HHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCch--HHHHHHHHhcCCChhHHHHHHHHHHHHhHH
Confidence 99999999999999854 4689999999999999999999999999 999999998754 3 234566777777779
Q ss_pred ccccccccCCh---hHHHHHHHHHHHh-----HHHHHHHHHHhhh--hhHHHHHHHHHHHHhhhccCCCCCcccccchhH
Q 002041 154 EVFNYKIAARP---ERRRQFEKELTSQ-----MEVALSTLTACLH--INELKEQVLEAFASWLRLKHRIPGSVLASHPLV 223 (976)
Q Consensus 154 E~~~~~~~~~~---~~r~~l~~~l~~~-----~~~vl~~l~~~l~--~~~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~ 223 (976)
|+.+.++..+. .|+.++++.|..+ .+.+++++..+.+ ++++...+|+|+.+|+.| +|.+.+.+++++
T Consensus 159 Ev~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~w---i~~~~i~~~~ll 235 (980)
T 3ibv_A 159 EIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSW---ININLIVNEPCM 235 (980)
T ss_dssp HHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT---SCHHHHHCHHHH
T ss_pred HHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhh---cCHHhhhcchHH
Confidence 99876543332 4566788888776 5666677766654 347889999999999998 777878889999
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHhhhhccCCCCCccCchhHHHHHHHHHHhhHHHhh---hccCCHHHHHHHHHHHHHHh
Q 002041 224 LTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLT---DSSKDEEDVKAIARLFADMG 300 (976)
Q Consensus 224 ~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~v~~l~~~~~---~~~~d~e~~~~~~~l~~~~~ 300 (976)
+.+|+.|++++++++|++||++|+++++. ++++.++++.+ ++.+.+. .+++|.|+.+++|++++++|
T Consensus 236 ~~l~~~L~~~~~r~~A~ecL~ei~~k~~~-----~~~k~~li~~l-----~L~~~~~~l~~~~~D~d~~~~la~L~~~~g 305 (980)
T 3ibv_A 236 NLLYSFLQIEELRCAACETMTEIVNKKMK-----PLEKLNLLNIL-----NLNLFFSKSQEQSTDPNFDEHVAKLINAQG 305 (980)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHHHHSCCC-----HHHHHHHHHHH-----HHHHHHCC-----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHcCCC-----hhhHHHHHHHH-----hHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998864 33566676653 2333332 22578899999999999999
Q ss_pred hHHHHHHhcCC------------chhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHH
Q 002041 301 DSYVELIATGS------------DESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSR 368 (976)
Q Consensus 301 ~~~~~~l~~~~------------~~~~~ll~~lL~~~~~~~~~vs~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 368 (976)
+.+... .+.+ +.+..+++++|.+++|++++|+..+++||..+.+.+...+. +..
T Consensus 306 e~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~-------------~~~ 371 (980)
T 3ibv_A 306 VELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESS-------------SKE 371 (980)
T ss_dssp HHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTT-------------SCC
T ss_pred HHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccc-------------ccc
Confidence 999888 6555 34668999999999999999999999999999886642110 001
Q ss_pred HHHhhHHHHHHHHHHHHhhccCCCCCCCCCh----hhhHHhHhhhhcccccCCccchhhhhhhhhhhHHHHHHhhcChhH
Q 002041 369 RLQVFRSAYESLVSLVSFRVQYPQDYQDLSL----EDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDA 444 (976)
Q Consensus 369 ~~~~~~~~~~~Ll~~l~~k~~~p~d~~~~~~----d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~ 444 (976)
..+.++|++.+|++++++||+||+|.+ |++ ||+++|.+||++ ++ ++.+++.++|++.
T Consensus 372 ~~~~~~~~l~~Ll~~li~k~~yp~d~~-~~~~~d~ed~~~F~e~Rk~-----------------l~-~l~d~~~~l~~~~ 432 (980)
T 3ibv_A 372 LSASLKEFLKSLLEAIIKKMKYDESQE-WDDDPDSEEEAEFQEMRKK-----------------LK-IFQDTINSIDSSL 432 (980)
T ss_dssp CCHHHHHHHHHHHHHHHHTTSCCTTCC-CCCCSSSSTHHHHHHHHHH-----------------HH-HHHHHHHHHCHHH
T ss_pred ccHHHHHHHHHHHHHHHHHccCCCccc-cccccchhHHHHHHHHHHH-----------------HH-HHHHHHHhcChHH
Confidence 235689999999999999999998753 543 677899999999 88 8999999999999
Q ss_pred HHHHHHHHHHHhHhhcC--CCCCCcchhhHHHHHHHHhhcccCcc------cccchHHHhhhccCC-------CCcHHHH
Q 002041 445 TLKILYIKFVEGVACCG--NKHNEWRPAEAALFCIRAISTYVSVV------EAEVMPQVMALLPKL-------PQQPQLL 509 (976)
Q Consensus 445 ~l~~l~~~l~~~~~~~~--~~~~~w~~~Ea~L~~l~~i~e~~~~~------~~~~l~~l~~~l~~~-------~~~~~v~ 509 (976)
+++++++.+...+.+.. ..+.+|+++||+||+++++||++... .++.+|++++.+..+ +.||.||
T Consensus 433 ~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~ 512 (980)
T 3ibv_A 433 FSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQ 512 (980)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 99966665554443211 11457999999999999999998852 345677777765432 4699999
Q ss_pred HHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHc--ccCCCh-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhc
Q 002041 510 QTVCLTIGAYSKWFDAASSDPSILASVLSILTS--GMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNG 586 (976)
Q Consensus 510 ~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~--~l~~~~-~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~ 586 (976)
.++|+++|||++|+..||+ ++++++++++. |+++++ +|+.+||+||.+||++|+.+|.||++.+++.+.+++..
T Consensus 513 ~~~~~~l~rys~~~~~~~~---~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~ 589 (980)
T 3ibv_A 513 LLYMEILVRYASFFDYESA---AIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNI 589 (980)
T ss_dssp HHHHHHHHHTGGGGGTCCT---THHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCC
T ss_pred HHHHHHHHHHHHHHhcCch---hHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcC
Confidence 9999999999999999998 99999999999 998763 59999999999999999999999999999999998863
Q ss_pred cCCCCC----------------CHHhHHHHHHHHHHHHhcC--ChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcc
Q 002041 587 EGSLKV----------------SAEDSLHLVEALSMVITEL--PQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPR 648 (976)
Q Consensus 587 ~~~~~l----------------~~~~~~~l~eai~~vi~~~--p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~ 648 (976)
.....- +.+++.+++||+|.+++.. |+++...+++.++.|++++++++++.....+++ ..
T Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~-~~- 667 (980)
T 3ibv_A 590 SVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALEN-II- 667 (980)
T ss_dssp CCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CH-HH-
T ss_pred cCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccH-HH-
Confidence 210000 2457999999999999875 567788999999999999999999865432111 11
Q ss_pred hhhhHHHHHHHHhhhcCC----cccHHHHHHHHhHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 002041 649 DLTVHIDRFAYIFRYVNH----PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEI 724 (976)
Q Consensus 649 ~~~~~l~~l~~~~~~~~~----~~~~~~~~~~~~~~l~~ll~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l 724 (976)
.+.+.+..++.+.++.+. ++|+..++.++|+++..+++.|+.+..|+|++|.+++++++++|..+.|++|++++.+
T Consensus 668 ~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~l 747 (980)
T 3ibv_A 668 SVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISIL 747 (980)
T ss_dssp HHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHH
Confidence 233344444555444432 4678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCccHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhhhcCcc----cCCCCCccHHHHHHHHHHHHhhC-
Q 002041 725 QGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIE----EFTSRPDVADDCFLLASRCIRYC- 799 (976)
Q Consensus 725 ~~~~~~~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~----~~~~~pD~~~~~f~l~~~~~~~~- 799 (976)
...|+..++++||++++++|++||++ +.+.+.+++.+++++++++|++.. .+++..|+.++||.|+..++.+.
T Consensus 748 l~~~~~~e~~~fL~l~~qli~~f~~~--~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~ 825 (980)
T 3ibv_A 748 LNSIDMNELVDVLSFISQLIHIYKDN--MMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGF 825 (980)
T ss_dssp HHHCCTTTHHHHHHHHHHHHHHTTTT--SHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999998 999999999999999999998521 13455779999999999999854
Q ss_pred CCcccCc---CChHHHHHHHHH-hcccCCchhHHHHHHHHHHhhcc-cCCCCchhhHHHHHHHHhhchHHHHHHHHHHcc
Q 002041 800 PQLFIPS---SVFPSLVDCSMI-GITVQHREASNSILTFLSDIFDL-AKSCKGEEFLSVRDSVIIPRGASITRILIASLT 874 (976)
Q Consensus 800 p~~~~~~---~~l~~~~~~~~~-~l~~~~~~~~~~~~~fl~~l~~~-~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~ 874 (976)
+..+++. +.++.++...+. +...+|+.+.|+|+.++++++.. +++...+.| ++++.+ ++..++....
T Consensus 826 ~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~~~~~gf----~~f~~~----~~~~~f~~p~ 897 (980)
T 3ibv_A 826 GSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGKDGIAGF----ENFTLS----LTPLCFEMPV 897 (980)
T ss_dssp TGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC-------CCH----HHHHHH----HHHHHHHGGG
T ss_pred hhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHCCCCcchHH----HHHHHH----HHHHHHHhhc
Confidence 6666663 467777776653 45578999999999999999984 432112333 233332 2223333321
Q ss_pred ---c----CCCCCCcccHHHHHHHHHHHhhHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCCchhhhHHHHHH
Q 002041 875 ---G----ALPSSRLETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEEL 947 (976)
Q Consensus 875 ---~----~~~~~~~~~~~~~L~~l~~~~~~~~~~wl~~~l~~~p~~~~~~~~k~~f~~~l~~~~~~~~~~~~~~~l~~F 947 (976)
+ +-.+..+.+++.+++.++.+.|+++-+||.+. .+|+-+++++..+.|+++|.. .+.+.||+-++.|
T Consensus 898 ~~~f~~~Daq~~~~~~e~~~~~k~~~~~~g~~~~~~l~~~--~lp~~~~~~~~~~~~~~~l~~----~~~k~f~~~~~~~ 971 (980)
T 3ibv_A 898 NPNFNTRDGQSLVVLGELAGLQKIILEKLGDIYKSYLVTV--YFPTVNFPDVMASEYLQALSN----LDSRSFKQFFQKF 971 (980)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TTTC----CCHHHHHHHC--------------------
T ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh--cCCcCCCCHHHHHHHHHHHhc----cchhhHHHHHHHH
Confidence 1 11223566899999999999999999999874 689888999999999999943 4567899999999
Q ss_pred HHHHHhh
Q 002041 948 SDVCRRN 954 (976)
Q Consensus 948 ~~~cr~~ 954 (976)
....|+.
T Consensus 972 ~~~~~~~ 978 (980)
T 3ibv_A 972 IQALKSG 978 (980)
T ss_dssp CHHHHC-
T ss_pred HHHhhcC
Confidence 8877763
No 3
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=1.2e-86 Score=846.88 Aligned_cols=887 Identities=21% Similarity=0.376 Sum_probs=760.2
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHH
Q 002041 3 LQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRG 82 (976)
Q Consensus 3 ~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~~~ 82 (976)
.+++|+++++++|+++|++.|++|+++|++||++|++|.+|..||.. +.+.++|||||++|+++|+++|..++++++..
T Consensus 22 ~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~-~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ 100 (963)
T 2x19_B 22 TVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQP-DKVPEIQYFGASALHIKISRYWSDIPTDQYES 100 (963)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTST-TSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHH
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHhCHHhCCHHHHHH
Confidence 46789999999988889999999999999999999999999999985 67889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC------CCCcHHHHHHHHhhcccccc
Q 002041 83 LQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS------HPEFVPGFLELLTVLPEEVF 156 (976)
Q Consensus 83 lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l~~------~~~~~~~~L~~L~~l~EE~~ 156 (976)
+|+.|++++.++..+++.||+|+|.+++.++.+.+++.||+ +++++++.+++ ++.....++.+|+.++||+.
T Consensus 101 ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~--~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~ 178 (963)
T 2x19_B 101 LKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPC--AVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQ 178 (963)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTT--HHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccch--HHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHh
Confidence 99999999998765689999999999999999999889999 99999998875 33367899999999999998
Q ss_pred cccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhhh----HHHHHHHHHHHHhhhccCCCCCcccccchhHHHHHhcCCC
Q 002041 157 NYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHS 232 (976)
Q Consensus 157 ~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~----~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~~~~~L~~ 232 (976)
+.+. +.++|..+++.+..+++.|++++..+++.. .+...+++|+.+|+..+ .+. ....++++.+++.+.+
T Consensus 179 ~~~~--~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~--~~~--~~~~~ll~~l~~~l~~ 252 (963)
T 2x19_B 179 TSRL--PQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLE--VPL--QDCEALIQAAFAALQD 252 (963)
T ss_dssp TCCC-----------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSS--CCG--GGTHHHHHHHHHHTTS
T ss_pred cccC--cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCC--CCc--ccchHHHHHHHHHhCC
Confidence 7654 567778888888889999999999888653 48889999999999853 322 2457899999999999
Q ss_pred cchHHHHHHHHHHHhhhhccCCCCCccCchhHHHHHHHHHHhhHHHhh--hccCCHHHHHHHHHHHHHHhhHHHHHHhcC
Q 002041 233 EILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLT--DSSKDEEDVKAIARLFADMGDSYVELIATG 310 (976)
Q Consensus 233 ~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~v~~l~~~~~--~~~~d~e~~~~~~~l~~~~~~~~~~~l~~~ 310 (976)
++++++|++|+.++++..... +..+.+..+++.++++.+.+. ...+|.+..+.+|++++.+++.+...+.++
T Consensus 253 ~~~~~~a~~~l~~i~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~ 326 (963)
T 2x19_B 253 SELFDSSVEAIVNAISQPDAQ------RYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQ 326 (963)
T ss_dssp TTTHHHHHHHHHHHHTCTTGG------GCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHcccccc------cCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcC
Confidence 999999999999999754321 234567777777666544332 134567889999999999999999888743
Q ss_pred ---CchhHHHHHHHHhhccCC-----CcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHhhHHHHHHHHH
Q 002041 311 ---SDESMLIVHALLEVASHP-----EYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVS 382 (976)
Q Consensus 311 ---~~~~~~ll~~lL~~~~~~-----~~~vs~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~ 382 (976)
++.+..++++++.++.+| +++++..+++||+.+.+.....+ . ..++.....++|++.+++.
T Consensus 327 ~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~------~-----~~~~~~~~~~~~~l~~l~~ 395 (963)
T 2x19_B 327 VEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFE------A-----EKQAVYQQVYRPVYFQLVD 395 (963)
T ss_dssp GGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSC------H-----HHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhh------h-----hhhHHHHHHHHHHHHHHHH
Confidence 356778999999999873 67899999999999998653210 0 0113456788999999999
Q ss_pred HHHhhccCCCC--CCCCChhhhHHhHhhhhcccccCCccchhhhhhhhhhhHHHHHHhhcChhHHHHHHHHHHHHhHhhc
Q 002041 383 LVSFRVQYPQD--YQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACC 460 (976)
Q Consensus 383 ~l~~k~~~p~d--~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~ 460 (976)
+++.+|.||+| +++|++||.++|++||++ ++|++.+++.+.| +.+++.+.+.+.+.+.+.
T Consensus 396 ~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~-----------------~~~~L~~~~~~~~-~~~l~~~~~~l~~~l~~~ 457 (963)
T 2x19_B 396 VLLHKAQFPSDEEYGFWSSDEKEQFRIYRVD-----------------ISDTLMYVYEMLG-AELLSNLYDKLGRLLTSS 457 (963)
T ss_dssp HHHHHHSCCCHHHHHTSCHHHHHHHHHHHHH-----------------HHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCcccccCCChhHHHHHHHHHHH-----------------HHHHHHHHHHHcc-HHHHHHHHHHHHHHHHhc
Confidence 99999999986 346888888899999999 9999999999999 668888888887766432
Q ss_pred CCCCCCcchhhHHHHHHHHhhcccCcccccchHHHhhhccCCC-CcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHH
Q 002041 461 GNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSI 539 (976)
Q Consensus 461 ~~~~~~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~~~~-~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~ 539 (976)
.+ +.+|+.+||++|+++++++++..+.++.++++++.+++++ +||.||.++|+++|+|++|+..||+ +++++++.
T Consensus 458 ~~-~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~---~l~~vl~~ 533 (963)
T 2x19_B 458 EE-PYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV---MINSVLPL 533 (963)
T ss_dssp CC-SCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH---HHTTTHHH
T ss_pred CC-CCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH---HHHHHHHH
Confidence 12 5689999999999999999998877788999999887776 5899999999999999999999886 99999999
Q ss_pred HHcccCCChHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHH
Q 002041 540 LTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKA 619 (976)
Q Consensus 540 l~~~l~~~~~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~ 619 (976)
++.+++++. |+.+||.||.+||++|+..+.||++.+++.+.++++.+ .++.+++..+++++|.++.++|.++..++
T Consensus 534 l~~~l~~~~-V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~---~~~~~~~~~~~eai~~i~~~~~~~~~~~~ 609 (963)
T 2x19_B 534 VLHALGNPE-LSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQ---IHKTSQCMWLMQALGFLLSALQVEEILKN 609 (963)
T ss_dssp HHHHTTCGG-GHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHhCCch-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccC---CCChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999998866 99999999999999999999999999999999988752 46788999999999999999986778899
Q ss_pred HHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCC--------------------cccHHHHHHHHhH
Q 002041 620 LEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH--------------------PEAVADAIQRLWP 679 (976)
Q Consensus 620 l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--------------------~~~~~~~~~~~~~ 679 (976)
+..++.|+.+.|+++.++.. ++.....+...+++++.+++.+.. ++|+..+++.+||
T Consensus 610 ~~~l~~~l~~~l~~~~~~~~---~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (963)
T 2x19_B 610 LHSLISPYIQQLEKLAEEIP---NPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ 686 (963)
T ss_dssp HHHHHHHHHHHHHHHHSSCS---CHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHH
Confidence 99999999999999865432 111123345678999999888763 2567889999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCCccHHHHHHHHHHHhCCCCcchHHHHH
Q 002041 680 IFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHN 759 (976)
Q Consensus 680 ~l~~ll~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~~~~~~~~~l~~ 759 (976)
++..+++.+..+.++.|.+|++++.++..+|+.+.|++|++++.+...|...+.++++++++.++..||.++.+.+.+.+
T Consensus 687 ~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~l~~~li~~f~~~~~~~~~~~~ 766 (963)
T 2x19_B 687 LIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPPIEA 766 (963)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCTTTCHHHHH
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 99999999998899999999999999999999999999999999999999888899999999999999988777888888
Q ss_pred HHHHHHHHHHhhhcCcccCCCCCccHHHHHHHHHHHHhhCCCcccCcCC-hHHHHHHHHHhcccCCchhHHHHHHHHHHh
Q 002041 760 LIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSV-FPSLVDCSMIGITVQHREASNSILTFLSDI 838 (976)
Q Consensus 760 ~~~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~~~~-l~~~~~~~~~~l~~~~~~~~~~~~~fl~~l 838 (976)
++..++.+++++++ .++.++||++++||.|+.++++++|..+++++. +..++++++.+++.+|+++.+++++||..+
T Consensus 767 ~l~~~~~~~l~~~~--~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l 844 (963)
T 2x19_B 767 LFLLVTSVTLTLFQ--QGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTEL 844 (963)
T ss_dssp HHHHHHHHHHHHHH--HCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--hCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999998887 456789999999999999999999999988777 999999999999999999999999999999
Q ss_pred hcccCCCCchhhHHHHHHHHhhchHHHHHHHHHHcccCCCCCCcccHHHHHHHHHHHhhHHHHHHHHHHHh--hCCCCCC
Q 002041 839 FDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAKESVS--LIPLTAL 916 (976)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~~~~~~~~~~~~L~~l~~~~~~~~~~wl~~~l~--~~p~~~~ 916 (976)
++.... . +.+++++.++|+.|+..++.++++..|++.+++++++|+.++.++|+.+.+|+.+++. .+|..++
T Consensus 845 ~~~~~~--~----~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~l~~~l~~~~~p~~~~ 918 (963)
T 2x19_B 845 LPRCGE--V----ESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKHCFSLLSMWIKEALQPPGFPSARL 918 (963)
T ss_dssp GGGTTS--S----CHHHHHTTTSHHHHHHHHHHHHTTTSCGGGHHHHHHHHHHHHHHSHHHHHHHHHHHTCSTTSSCTTC
T ss_pred HhcCCC--h----HHHHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHChHHHHHHHHHHhcccCCCCCcC
Confidence 976431 1 1467888999999999999999999999999999999999999999999999999984 7998899
Q ss_pred CHHHHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHHhh
Q 002041 917 AEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRN 954 (976)
Q Consensus 917 ~~~~k~~f~~~l~~~~~~~~~~~~~~~l~~F~~~cr~~ 954 (976)
++++|++|++++++.+ .+.|+||+.+++|+..|||.
T Consensus 919 ~~~~~~~f~~~l~~~~--~~~~~f~~~l~~F~~~~r~~ 954 (963)
T 2x19_B 919 SPEQKDTFSQQILRER--VNKRRVKEMVKEFTLLCRGL 954 (963)
T ss_dssp CHHHHHHHHHHHTCSS--CCHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHH--cCcHHHHHHHHHHHHHHcCc
Confidence 9999999999997653 47999999999999999985
No 4
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=1.9e-85 Score=815.22 Aligned_cols=879 Identities=14% Similarity=0.199 Sum_probs=723.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHH
Q 002041 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGL 83 (976)
Q Consensus 4 ~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~~~l 83 (976)
++.+++||.++|+++++ .|++|++||++||++|++|..|..+|.. +.++++|||||++|+++|+++|..++++++..+
T Consensus 15 v~~Le~av~~ly~p~~~-~r~~A~~~L~~~q~sp~aw~~~~~iL~~-s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~I 92 (1023)
T 4hat_C 15 IALLDQVVSTFYQGSGV-QQKQAQEILTKFQDNPDAWQKADQILQF-STNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92 (1023)
T ss_dssp HHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHCTTGGGGHHHHHHH-CCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHhCCChH-HHHHHHHHHHHHHcCccHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHH
Confidence 57899999999987665 8999999999999999999999999976 578899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC------ChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCcHHHHHHHHhhccccccc
Q 002041 84 QDSLNTLLKKFHKG------PPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFN 157 (976)
Q Consensus 84 r~~Ll~~l~~~~~~------~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l~~~~~~~~~~L~~L~~l~EE~~~ 157 (976)
|+.+++++.++..+ ++++++|+|.+++.++++.+|+.||+ +++++++.+++++..+.++|.+|+.|+||+.+
T Consensus 93 r~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~--~l~dL~~~l~~~~~~~~~~L~iL~~L~EEV~~ 170 (1023)
T 4hat_C 93 RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPE--FIPELIGSSSSSVNVCENNMIVLKLLSEEVFD 170 (1023)
T ss_dssp HHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTT--HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchH--HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999886533 57899999999999999999999999 99999999987777788999999999999876
Q ss_pred c-cccCChhHHHHHHHHHHHhHHHHHHHHHHhhhh---hHHHHHHHHHHHHhhhccCCCCCcccccchhHHHHH-hcCCC
Q 002041 158 Y-KIAARPERRRQFEKELTSQMEVALSTLTACLHI---NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTAL-SSLHS 232 (976)
Q Consensus 158 ~-~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~---~~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~~~-~~L~~ 232 (976)
. +..++..||..+++.|..+++.|++++..+++. +++...+++|+.+|+.| +|.+.+.++++++.++ ..|++
T Consensus 171 ~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~W---I~i~~i~~~~ll~~l~~~~L~~ 247 (1023)
T 4hat_C 171 FSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMTS 247 (1023)
T ss_dssp SCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHHS
T ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh---CCHHHhcchhHHHHHHHHHcCC
Confidence 3 334567889999999999999999999999875 36888999999999998 7888888899999999 99999
Q ss_pred cchHHHHHHHHHHHhhhhccCCCCCccCchhHHHHHHHHH------------HhhHHHhhhc-cCCHHHHHHHHHHHHHH
Q 002041 233 EILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQI------------MSLKAHLTDS-SKDEEDVKAIARLFADM 299 (976)
Q Consensus 233 ~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~v------------~~l~~~~~~~-~~d~e~~~~~~~l~~~~ 299 (976)
++++++|++||++++++.... +.....+.+..+++.+ .++.+.+..+ ++|.++++++|++|+++
T Consensus 248 ~~~r~~A~ecL~eIv~~~~~~---~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~ 324 (1023)
T 4hat_C 248 PDTRAITLKCLTEVSNLKIPQ---DNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTY 324 (1023)
T ss_dssp HHHHHHHHHHHHHHHTSCCCS---SCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccccCC---chHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHH
Confidence 999999999999999854211 1001112333333332 2345555544 34678899999999999
Q ss_pred hhHHHHHHhcCCc---hhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHhhHHH
Q 002041 300 GDSYVELIATGSD---ESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSA 376 (976)
Q Consensus 300 ~~~~~~~l~~~~~---~~~~ll~~lL~~~~~~~~~vs~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (976)
|+++...+.+++. .+...+++|+.++.++|.++...+++||+.+.++++.. +.+...|+|+
T Consensus 325 ~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e----------------~~~~~~~~~~ 388 (1023)
T 4hat_C 325 LARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE----------------PLKKHIYEEI 388 (1023)
T ss_dssp HHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTS----------------TTTGGGGHHH
T ss_pred HHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhc----------------hHHHHHHHHH
Confidence 9999998865532 12334668999999999999999999999999987641 1234689999
Q ss_pred HHHHHHHHHhhccCCCC-------CCCC------ChhhhHHhHhhhhcccccCCccchhhhhhhhhhhHHHHHHhhcChh
Q 002041 377 YESLVSLVSFRVQYPQD-------YQDL------SLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGD 443 (976)
Q Consensus 377 ~~~Ll~~l~~k~~~p~d-------~~~~------~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~ 443 (976)
|.+|+.++++||+||++ .++| |.|+.+.|+.|| |+|.+++.+.| +
T Consensus 389 ~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~R---------------------d~L~~l~~l~~-~ 446 (1023)
T 4hat_C 389 CSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSER---------------------EVLVYLTHLNV-I 446 (1023)
T ss_dssp HHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHH---------------------HHHHHHHHHCH-H
T ss_pred HHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHH---------------------HHHHHHhccCH-H
Confidence 99999999999999983 3355 556667777766 46788888888 5
Q ss_pred HHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcc-cccchHHHhhhccCCCC-------cHHHHHHHHHH
Q 002041 444 ATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPKLPQ-------QPQLLQTVCLT 515 (976)
Q Consensus 444 ~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~-~~~~l~~l~~~l~~~~~-------~~~v~~t~~~~ 515 (976)
.+++++.+.+.+.+.. ++.+|+.+||++||+|+|++++.++ ++++++++++.|.+++. +++++.++|++
T Consensus 447 ~~~~~~~~~l~~~l~~---~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~ 523 (1023)
T 4hat_C 447 DTEEIMISKLARQIDG---SEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYV 523 (1023)
T ss_dssp HHHHHHHHHHHHHHSS---TTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHH
Confidence 6999999999876532 2478999999999999999998876 56889999988765542 36788999999
Q ss_pred HHhcHHHHhhCCCCcchHHHHHHHHHcccCCC-hHHHHHHHHHHHHHHHHhhhhhh--------cCHHHHHHHHHHHhhc
Q 002041 516 IGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKLC--------GYLDGLYNVYRTAVNG 586 (976)
Q Consensus 516 ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~-~~v~~~A~~al~~l~~~~~~~L~--------~~l~~ll~~~~~~~~~ 586 (976)
+|||++|+..||+ +|++++++++++++++ ++|+.+||.||.+||++|+.++. ||++.+++.+.+...
T Consensus 524 lGry~~wl~~~~~---~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~- 599 (1023)
T 4hat_C 524 VGQYPRFLKAHWN---FLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTA- 599 (1023)
T ss_dssp HHTCHHHHHHCHH---HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHT-
T ss_pred HHHHHHHHhccHH---HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHH-
Confidence 9999999999997 9999999999999754 34999999999999999999884 799999999998875
Q ss_pred cCCCCCCHHhHHHHHHHHHHHHhcCChHH-HHHHHHHhhhHHHHHHHHHHhcCCCccc----ccCcchhhhHHHHHHHHh
Q 002041 587 EGSLKVSAEDSLHLVEALSMVITELPQVD-AKKALEMLCLPVVTPLQEIINQGPEILQ----KKHPRDLTVHIDRFAYIF 661 (976)
Q Consensus 587 ~~~~~l~~~~~~~l~eai~~vi~~~p~~~-~~~~l~~ll~p~~~~l~~~~~~~~~~~~----~~~~~~~~~~l~~l~~~~ 661 (976)
+++.+++..+|||+|.+++++|+++ ...+++.++.|+.+.|++++++...+++ ....+.+...+++++.++
T Consensus 600 ----~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~ 675 (1023)
T 4hat_C 600 ----DLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVC 675 (1023)
T ss_dssp ----TSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHH
T ss_pred ----hCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999876 5689999999999999999864321111 011234556677877777
Q ss_pred hhcCCcccHHHHHHHHhHHHHHHHHhhcCCH--HH-----------HHHHHHHHHHH-HH----Hhhh------hhhhhH
Q 002041 662 RYVNHPEAVADAIQRLWPIFKAIFDIRAWDM--RT-----------MESLCRACKYA-VR----TSKR------FMGITI 717 (976)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~--~v-----------~e~~~~~~~~~-~~----~~~~------~~~~~l 717 (976)
.+++ +++.+.+..+||.+..+.+.+.... .+ ..+.++++|+. ++ ..+. ....++
T Consensus 676 ~~lg--~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~ 753 (1023)
T 4hat_C 676 TSMG--ADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLV 753 (1023)
T ss_dssp HHHG--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTH
T ss_pred HHhc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhH
Confidence 7764 5677777888888777766653311 00 12456666542 22 1111 134688
Q ss_pred HHHHHHHHHHHhhc----CCccHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhhhcCcccCCCCCccHHHHHHHHH
Q 002041 718 GAILEEIQGLYQQH----QQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLAS 793 (976)
Q Consensus 718 ~~l~~~l~~~~~~~----~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~ 793 (976)
|++++.++..|.++ +.+++|++.+.+|+++|.. +.+.+..+++.++.+|+++++ +++.++||.+.+||+|+.
T Consensus 754 ~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~--~~~~~~~il~~vf~~Tl~mi~--~~~~~~Pe~r~~ff~ll~ 829 (1023)
T 4hat_C 754 EPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHM--IPQGVILILQSVFECTLDMIN--KDFTEYPEHRVEFYKLLK 829 (1023)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGG--CHHHHHHHHHHHHHHHHHHHS--SCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHHHHHHh--cccccChHHHHHHHHHHH
Confidence 99999999999986 4599999999999999975 889999999999999999998 689999999999999999
Q ss_pred HHHhhCCCcccCc--CChHHHHHHHHHhcccCCchhHHHHHHHHHHhhcccCCCCchhhHHHHHHHHhhchHHHHHHHHH
Q 002041 794 RCIRYCPQLFIPS--SVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIA 871 (976)
Q Consensus 794 ~~~~~~p~~~~~~--~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~l~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~ 871 (976)
++..+||..++.- +.+..++++++++++.+++++..++++|+..+++...+.+.. +..++++..++..++..+|.
T Consensus 830 ~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~~~---~~~~~f~~~~~~~~~~~~~~ 906 (1023)
T 4hat_C 830 VINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNV---PFANEFHKNYFFIFVSETFF 906 (1023)
T ss_dssp HHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHCSS---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHHHHHHHHH
Confidence 9999999998764 489999999999999999999999999999999865321122 24778999999999999999
Q ss_pred HcccCCCCCCcccHHHHHHHHHHHh---------------------hHHHHHHHHHHHh-hCCCCCCCHHHHHHHHHHHH
Q 002041 872 SLTGALPSSRLETVTYALLALTRAY---------------------GVRSLEWAKESVS-LIPLTALAEVERSRFLQALS 929 (976)
Q Consensus 872 ~l~~~~~~~~~~~~~~~L~~l~~~~---------------------~~~~~~wl~~~l~-~~p~~~~~~~~k~~f~~~l~ 929 (976)
.++...+.+.+...+.+|+.|...- ...+++|+.+.+. .|| ++++++...|++.++
T Consensus 907 v~td~~h~~~f~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~fp--~~~~~qi~~fv~~l~ 984 (1023)
T 4hat_C 907 VLTDSDHKSGFSKQALLLMKLISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFP--HLTSEQIASFLSALT 984 (1023)
T ss_dssp HHHSSSCGGGHHHHHHHHHHHHHHHHTTCCCSCSSCTTSSCTTCCHHHHHHHHHHHHHHHHCT--TSCHHHHHHHHHHHH
T ss_pred HHhCchhhhhHHHHHHHHHHHHHHHHcCCcccccCCccccCCCCchHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHH
Confidence 9999999999999999999986531 2357889998884 899 689999999999999
Q ss_pred HHhcCCCchhhhHHHHHHHHHHHhh
Q 002041 930 EAASGVDVNAAMAPVEELSDVCRRN 954 (976)
Q Consensus 930 ~~~~~~~~~~~~~~l~~F~~~cr~~ 954 (976)
... ++..+||..+|||....|.-
T Consensus 985 ~~~--~~~~~f~~~lrdfli~~ke~ 1007 (1023)
T 4hat_C 985 KQC--KDLVVFKGTLRDFLVQIKEV 1007 (1023)
T ss_dssp HTT--TCHHHHHHHHHHHHHHTTSS
T ss_pred Hcc--CCHHHHHHHHHHHhHHhHhh
Confidence 863 68999999999999987764
No 5
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=5.5e-85 Score=804.02 Aligned_cols=919 Identities=16% Similarity=0.242 Sum_probs=720.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHH
Q 002041 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGL 83 (976)
Q Consensus 4 ~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~~~l 83 (976)
++.+++++.++|++ +++.|++|++||++||++|++|..|..+|.. +.++++|||||++|+++|+++|..++++++..+
T Consensus 27 v~~Le~lv~~ly~p-~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~-s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~L 104 (1073)
T 3gjx_A 27 INLLDNVVNCLYHG-EGAQQRMAQEVLTHLKEHPDAWTRVDTILEF-SQNMNTKYYGLQILENVIKTRWKILPRNQCEGI 104 (1073)
T ss_dssp HHHHHHHHHTTTCS-SHHHHHHHHHHHHTSSCCSCHHHHHTCC----CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCchHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHH
Confidence 56899999999876 6789999999999999999999999999976 678899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC------ChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCcHHHHHHHHhhccccccc
Q 002041 84 QDSLNTLLKKFHKG------PPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFN 157 (976)
Q Consensus 84 r~~Ll~~l~~~~~~------~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l~~~~~~~~~~L~~L~~l~EE~~~ 157 (976)
|+.|++++.++..+ ++.+++|+|.++|.++++.+|+.||+ +++++++.+++++..+..+|.+|+.|+||+.+
T Consensus 105 R~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~--fi~dLv~~~~~~~~~~~~~L~IL~~L~EEV~d 182 (1073)
T 3gjx_A 105 KKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPT--FISDIVGASRTSESLCQNNMVILKLLSEEVFD 182 (1073)
T ss_dssp HHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTT--HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccH--HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999886433 46788999999999999999999999 99999999876667788999999999999876
Q ss_pred c-cccCChhHHHHHHHHHHHhHHHHHHHHHHhhhh---hHHHHHHHHHHHHhhhccCCCCCcccccchhHHHH-HhcCCC
Q 002041 158 Y-KIAARPERRRQFEKELTSQMEVALSTLTACLHI---NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTA-LSSLHS 232 (976)
Q Consensus 158 ~-~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~---~~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~~-~~~L~~ 232 (976)
. +..++..||.++++.|...++.|++++..+++. +++...+++|+.+|+.| +|.+.+.++++++.+ +..|++
T Consensus 183 ~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sW---I~i~~i~~~~ll~~L~~~~L~~ 259 (1073)
T 3gjx_A 183 FSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNW---IPLGYIFETKLISTLIYKFLNV 259 (1073)
T ss_dssp SHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHHHTSSS
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHh---cCHHHhccchHHHHHHHHhcCC
Confidence 4 334567888999999999999999999998865 36777888888888887 666778889999988 799999
Q ss_pred cchHHHHHHHHHHHhhhhccCCCCCccCchhHHHHHHHHHHh-----------hHHHhhhc-cCCHHHHHHHHHHHHHHh
Q 002041 233 EILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMS-----------LKAHLTDS-SKDEEDVKAIARLFADMG 300 (976)
Q Consensus 233 ~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~v~~-----------l~~~~~~~-~~d~e~~~~~~~l~~~~~ 300 (976)
++++++|++||++|+++... +..+.+..++..++. +.+.+..+ ++|.++++++|++|+++|
T Consensus 260 ~~~r~aA~dcL~eIv~k~~~-------~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~ 332 (1073)
T 3gjx_A 260 PMFRNVSLKCLTEIAGVSVS-------QYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFL 332 (1073)
T ss_dssp HHHHHHHHHHHHHHHHSCSG-------GGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcccc-------chHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHH
Confidence 99999999999999987421 223344445544432 23333333 345689999999999999
Q ss_pred hHHHHHHhcCCc---hhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccccccCccc----chHHHHHHHHHhh
Q 002041 301 DSYVELIATGSD---ESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEA----SAEAERSRRLQVF 373 (976)
Q Consensus 301 ~~~~~~l~~~~~---~~~~ll~~lL~~~~~~~~~vs~~~l~fW~~l~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~ 373 (976)
++|...+.++|+ .....+++++.|+.++|.++...+|+||+.|.+.++....+. .+..| +...+.+.+...|
T Consensus 333 e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~-~~~~~~~~~~~~~~~~~~~~~y 411 (1073)
T 3gjx_A 333 KEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFS-TSASPLLSGSQHFDIPPRRQLY 411 (1073)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSC-CCCSSCTTSSCCSCSCHHHHTT
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhcccc-ccccccccccccccchhHHHHH
Confidence 999999987754 345668889999999999999999999999999987543210 00000 0000012356789
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhhcccccCCccchhhhhhhhhhhHHHHHHhhcChhHHHHHHHHHH
Q 002041 374 RSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKF 453 (976)
Q Consensus 374 ~~~~~~Ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l 453 (976)
+|+|.+|..+++.||.||+|.-..++|+.+-|++||++ .. ...+|+ .+.|++.+++. ++++.+++++.+++
T Consensus 412 ~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d----~~---~~~ly~-~mrd~L~~lt~-l~~~~~~~i~~~~l 482 (1073)
T 3gjx_A 412 LTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKD----TD---SINLYK-NMRETLVYLTH-LDYVDTEIIMTKKL 482 (1073)
T ss_dssp HHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSS----CH---HHHHHH-HHHHHHHHHHH-HCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhh----cc---hHHHHH-HHHHHHHHHhc-CCHHHHHHHHHHHH
Confidence 99999999999999999987432233444556677776 11 011221 24556555543 45578999999988
Q ss_pred HHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcc-cccchHHHhhhccCCCCc-------HHHHHHHHHHHHhcHHHHhh
Q 002041 454 VEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPKLPQQ-------PQLLQTVCLTIGAYSKWFDA 525 (976)
Q Consensus 454 ~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~-~~~~l~~l~~~l~~~~~~-------~~v~~t~~~~ig~y~~~~~~ 525 (976)
.+.+. + +.++|+.+||++|++|+||..+.++ +++++|++++.|.++|.| +.++.++|+++|+|++|+..
T Consensus 483 ~~~~~--~-~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~ 559 (1073)
T 3gjx_A 483 QNQVN--G-TEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRA 559 (1073)
T ss_dssp HHHHT--S-CCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHhc--C-CCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHh
Confidence 87653 2 2578999999999999999887754 678999999998776632 46888899999999999999
Q ss_pred CCCCcchHHHHHHHHHcccCCC-hHHHHHHHHHHHHHHHHhhhhhh--------cCHHHHHHHHHHHhhccCCCCCCHHh
Q 002041 526 ASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKLC--------GYLDGLYNVYRTAVNGEGSLKVSAED 596 (976)
Q Consensus 526 ~p~~~~~l~~~l~~l~~~l~~~-~~v~~~A~~al~~l~~~~~~~L~--------~~l~~ll~~~~~~~~~~~~~~l~~~~ 596 (976)
||+ +|++++++++++++++ ++|+.+||.||.+||++|++++. ||++++++.+.+... +++.++
T Consensus 560 h~~---~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~-----~l~~~~ 631 (1073)
T 3gjx_A 560 HWK---FLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIIC-----DLQPQQ 631 (1073)
T ss_dssp CHH---HHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHT-----TCCHHH
T ss_pred CHH---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHH-----hcCHHH
Confidence 997 9999999999999864 24999999999999999999874 589999998888875 489999
Q ss_pred HHHHHHHHHHHHhcCChHH-HHHHHHHhhhHHHHHHHHHHhcCCCccccc-C---cchhhhHHHHHHHHhhhcCCcccHH
Q 002041 597 SLHLVEALSMVITELPQVD-AKKALEMLCLPVVTPLQEIINQGPEILQKK-H---PRDLTVHIDRFAYIFRYVNHPEAVA 671 (976)
Q Consensus 597 ~~~l~eai~~vi~~~p~~~-~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~-~---~~~~~~~l~~l~~~~~~~~~~~~~~ 671 (976)
...+|||+|.+++++|++. ...+++.++.|..++|++++++...+.+.. . .+.+...+++.+.+..++ .+++.
T Consensus 632 ~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~--g~~f~ 709 (1073)
T 3gjx_A 632 VHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAV--GHPFV 709 (1073)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHH--CGGGH
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhc--chhHH
Confidence 9999999999999999886 568999999999999999997542211100 1 123344455555555544 36777
Q ss_pred HHHHHHhHHHHHHHHhhcCCH-------------HHHHHHHHHHHHHH-HH----hhh------hhhhhHHHHHHHHHHH
Q 002041 672 DAIQRLWPIFKAIFDIRAWDM-------------RTMESLCRACKYAV-RT----SKR------FMGITIGAILEEIQGL 727 (976)
Q Consensus 672 ~~~~~~~~~l~~ll~~~~~~~-------------~v~e~~~~~~~~~~-~~----~~~------~~~~~l~~l~~~l~~~ 727 (976)
+.+..+||-+..+...+.... ....+.|+++|+.+ +- .+. ....++|++++.++..
T Consensus 710 ~~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~d 789 (1073)
T 3gjx_A 710 IQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLID 789 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHH
Confidence 777778776555554432211 12346778877533 22 221 2457889999999999
Q ss_pred Hhh----cCCccHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhhhcCcccCCCCCccHHHHHHHHHHHHhhCCCcc
Q 002041 728 YQQ----HQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLF 803 (976)
Q Consensus 728 ~~~----~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~ 803 (976)
|.+ .+++++|++++.+|+++|.. +.+.+..+++.++.+|+++++ +++.++||.+.+||+|+.++..+|+..+
T Consensus 790 Y~~~~p~~r~~evL~l~s~iv~k~~~~--~~~~~~~il~~vf~~Tl~mi~--~~f~~~Pe~r~~ff~ll~~~~~~~f~~l 865 (1073)
T 3gjx_A 790 YQRNVPAAREPEVLSTMAIIVNKLGGH--ITAEIPQIFDAVFECTLNMIN--KDFEEYPEHRTNFFLLLQAVNSHCFPAF 865 (1073)
T ss_dssp HHHSCGGGCCTHHHHHHHHHHHHHGGG--TGGGHHHHHHHHHHHHHHHHS--SCSSSCHHHHHHHHHHHHHHHHHCGGGT
T ss_pred HhcCCcccccHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHHh--CCcccCcHHHHHHHHHHHHHHHHHhHHH
Confidence 997 47899999999999999986 778899999999999999998 5899999999999999999999999988
Q ss_pred cC--cCChHHHHHHHHHhcccCCchhHHHHHHHHHHhhcccCCCCchhhHHHHHHHHhhchHHHHHHHHHHcccCCCCCC
Q 002041 804 IP--SSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSR 881 (976)
Q Consensus 804 ~~--~~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~l~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~~~~~ 881 (976)
+. ++.++.++++++++++..+|++..++++++..+++...+ .+ +..++++..++..++..+|..++...+.+.
T Consensus 866 ~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~--~~---~~~~~F~~~~~~~~~~~i~~v~td~~h~~~ 940 (1073)
T 3gjx_A 866 LAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQ--EE---AAAQSFYQTYFCDILQHIFSVVTDTSHTAG 940 (1073)
T ss_dssp TTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTT--CH---HHHHHHHHHHHHHHHHHHHHHHTCTTCGGG
T ss_pred HcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhc--Ch---HHHHHHHHHHHHHHHHHHHHHHhCchHhhh
Confidence 86 457899999999999999999999999999999986532 12 357889999999999999999999999999
Q ss_pred cccHHHHHHHHHHHh-----------------hHHHHHHHHHHH-hhCCCCCCCHHHHHHHHHHHHHHhcCCCchhhhHH
Q 002041 882 LETVTYALLALTRAY-----------------GVRSLEWAKESV-SLIPLTALAEVERSRFLQALSEAASGVDVNAAMAP 943 (976)
Q Consensus 882 ~~~~~~~L~~l~~~~-----------------~~~~~~wl~~~l-~~~p~~~~~~~~k~~f~~~l~~~~~~~~~~~~~~~ 943 (976)
+..-+.+|..|.... ...+++|+.+.+ +.|| ++++++.+.|++.++.. .++..+||..
T Consensus 941 f~~q~~il~~l~~~~~~~~i~~~l~~~~~~~n~~~~~~~~~~~l~~~fp--~~~~~qi~~fv~~l~~~--~~d~~~f~~~ 1016 (1073)
T 3gjx_A 941 LTMHASILAYMFNLVEEGKISTPLNPGNPVNNQMFIQDYVANLLKSAFP--HLQDAQVKLFVTGLFSL--NQDIPAFKEH 1016 (1073)
T ss_dssp HHHHHHHHHHHHHHHTTTCCSCSSSCTTTTCHHHHHHHHHHHHHHHHCT--TSCHHHHHHHHHHHHHS--TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHcCCccccccccCCCccHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHh--cCCHHHHHHH
Confidence 999999999886542 235789999888 6899 68999999999999985 3689999999
Q ss_pred HHHHHHHHHhh------------------------hhHHHHHHhccCCCCccc
Q 002041 944 VEELSDVCRRN------------------------RTVQEIVQGALKPLELNR 972 (976)
Q Consensus 944 l~~F~~~cr~~------------------------~~~~~~~~~~~~~~~~~~ 972 (976)
+|||....|.- |.+...|-|.+||+|++.
T Consensus 1017 lrDFli~~ke~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 1069 (1073)
T 3gjx_A 1017 LRDFLVQIKEFAGEDTSDLFLEERETALRQAQEEKHKLQMSVPGILNPHEIPE 1069 (1073)
T ss_dssp HHHHHHHHTSCCTTTCCTTCTTHHHHHHHHHHHHHHHHSCC------------
T ss_pred HHHHHHHHHHHcCCCcHHHhHHHHHHHHHHHHHHHHhHHhcCCCCCCccccCh
Confidence 99999765432 111223678999999853
No 6
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=1.3e-75 Score=747.09 Aligned_cols=890 Identities=14% Similarity=0.203 Sum_probs=692.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHH
Q 002041 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGL 83 (976)
Q Consensus 4 ~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~~~l 83 (976)
.+++.++++.+|++ +++.|++|+++|++|+++|++|..|..+|.+ +.+.++|||||++|+++|+++|..++++++..+
T Consensus 15 ~~~l~~~l~~~~~p-~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~-s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~i 92 (1049)
T 3m1i_C 15 IALLDQVVSTFYQG-SGVQQKQAQEILTKFQDNPDAWQKADQILQF-STNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92 (1049)
T ss_dssp HHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHSTTGGGGHHHHHHH-CSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHhCchHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHH
Confidence 56799999999865 5668999999999999999999999999986 578899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC------ChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCcHHHHHHHHhhccccccc
Q 002041 84 QDSLNTLLKKFHKG------PPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFN 157 (976)
Q Consensus 84 r~~Ll~~l~~~~~~------~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l~~~~~~~~~~L~~L~~l~EE~~~ 157 (976)
|+.+++++.+...+ ++.||+|+|.++|.++.+.+|+.||+ +++++++.+++++......+.+|+.++||+.+
T Consensus 93 r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~--ll~~L~~~~~~~~~~~~~~l~~L~~l~eev~~ 170 (1049)
T 3m1i_C 93 RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPE--FIPELIGSSSSSVNVCENNMIVLKLLSEEVFD 170 (1049)
T ss_dssp HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTT--HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchH--HHHHHHHHHccChHHHHHHHHHHHHHHHHHHH
Confidence 99999999885433 37899999999999999999899999 99999999875444577899999999999986
Q ss_pred cc-ccCChhHHHHHHHHHHHhHHHHHHHHHHhhhh---hHHHHHHHHHHHHhhhccCCCCCcccccchhHHHHHh-cCCC
Q 002041 158 YK-IAARPERRRQFEKELTSQMEVALSTLTACLHI---NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALS-SLHS 232 (976)
Q Consensus 158 ~~-~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~---~~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~~~~-~L~~ 232 (976)
.+ ...+..||.++++.+..+++.+++++..+++. ++++..+++|+.+|+.| +|.+.+...++++.+++ .+.+
T Consensus 171 ~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~w---i~~~~~~~~~ll~~l~~~~l~~ 247 (1049)
T 3m1i_C 171 FSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMTS 247 (1049)
T ss_dssp SCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHHS
T ss_pred hcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh---CCHHHHhhhhHHHHHHHHhCCC
Confidence 42 23456778888888988999999999888875 36889999999999997 55555556789998884 4578
Q ss_pred cchHHHHHHHHHHHhhhhccCCCCCccCchhHHHHHHHHHHh------------hHHHhhh-ccCCHHHHHHHHHHHHHH
Q 002041 233 EILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMS------------LKAHLTD-SSKDEEDVKAIARLFADM 299 (976)
Q Consensus 233 ~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~v~~------------l~~~~~~-~~~d~e~~~~~~~l~~~~ 299 (976)
++++.+|++|++++++...... .....+.+..+++.++. +...+.. .++|++..+++|++++++
T Consensus 248 ~~~~~~a~~~L~~i~~~~~~~~---~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~ 324 (1049)
T 3m1i_C 248 PDTRAITLKCLTEVSNLKIPQD---NDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTY 324 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCCCCTT---CHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCCcc---hhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 8999999999999998753210 00011223334444433 2223322 244567788999999999
Q ss_pred hhHHHHHHhcCC---chhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHhhHHH
Q 002041 300 GDSYVELIATGS---DESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSA 376 (976)
Q Consensus 300 ~~~~~~~l~~~~---~~~~~ll~~lL~~~~~~~~~vs~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (976)
++.+...+.+.+ +.+..++++++.++.+++++++..+++||+.+.+++... +..+..++++
T Consensus 325 ~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~----------------~~~~~~~~~~ 388 (1049)
T 3m1i_C 325 LARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE----------------PLKKHIYEEI 388 (1049)
T ss_dssp HHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHS----------------TTCGGGGHHH
T ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhc----------------hhHHHHHHHH
Confidence 999998886532 235678999999999999999999999999999876310 1224577899
Q ss_pred HHHHHHHHHhhccCCCCCCCCC-hhhhHHhHhhhhcccccCCccchhhhhhhhhhhHHHHHHhhcChhHHHHHHHHHHHH
Q 002041 377 YESLVSLVSFRVQYPQDYQDLS-LEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVE 455 (976)
Q Consensus 377 ~~~Ll~~l~~k~~~p~d~~~~~-~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~ 455 (976)
+.+|+.+++.||.||+|. +|. +|+.+.|++||.+ ...+ -++++++|++.+++.+.+ +.+++.+.+.+.+
T Consensus 389 l~~Lv~~ll~~m~~~ed~-~~~~dd~~e~~r~~~~d-----~d~~---~~~~~~~~~L~~l~~~~~-~~~l~~v~~~l~~ 458 (1049)
T 3m1i_C 389 CSQLRLVIIENMVRPEEV-LVVENDEGEIVREFVKE-----SDTI---QLYKSEREVLVYLTHLNV-IDTEEIMISKLAR 458 (1049)
T ss_dssp HHHHHHHHHHTCCCCTTC-CEEECTTSCEEECSSCC-----HHHH---HHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcce-eeeeCCCCcchHhhhcc-----chHH---HHHHHHHHHHHHHHccCH-HHHHHHHHHHHHH
Confidence 999999999999999764 342 2333445555543 0000 122348899999987766 6799999988887
Q ss_pred hHhhcCCCCCCcchhhHHHHHHHHhhcccCcc-cccchHHHhhhccCCC-------CcHHHHHHHHHHHHhcHHHHhhCC
Q 002041 456 GVACCGNKHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPKLP-------QQPQLLQTVCLTIGAYSKWFDAAS 527 (976)
Q Consensus 456 ~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~-~~~~l~~l~~~l~~~~-------~~~~v~~t~~~~ig~y~~~~~~~p 527 (976)
.+.. +..+|+.+||++|+++++++.+... ++.+++++++.+.+++ +||.++.++|+++|+|++|+..||
T Consensus 459 ~l~~---~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~ 535 (1049)
T 3m1i_C 459 QIDG---SEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW 535 (1049)
T ss_dssp HHTS---SSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCH
T ss_pred HhCC---CCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHH
Confidence 6642 2578999999999999999988765 3456888888764332 367888899999999999999998
Q ss_pred CCcchHHHHHHHHHcccCCC-hHHHHHHHHHHHHHHHHhhhhhh--------cCHHHHHHHHHHHhhccCCCCCCHHhHH
Q 002041 528 SDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKLC--------GYLDGLYNVYRTAVNGEGSLKVSAEDSL 598 (976)
Q Consensus 528 ~~~~~l~~~l~~l~~~l~~~-~~v~~~A~~al~~l~~~~~~~L~--------~~l~~ll~~~~~~~~~~~~~~l~~~~~~ 598 (976)
+ +++++++.++.+++++ .+|+.+||+||.+||++|+.++. ||++.+++.+..++.. ++.++..
T Consensus 536 ~---~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~-----~~~~~~~ 607 (1049)
T 3m1i_C 536 N---FLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTAD-----LQPQQVH 607 (1049)
T ss_dssp H---HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTT-----SCHHHHH
T ss_pred H---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHh-----CCHHHHH
Confidence 6 9999999999999875 36999999999999999999886 9999999999998863 6788999
Q ss_pred HHHHHHHHHHhcCCh-HHHHHHHHHhhhHHHHHHHHHHhcCCCcccc----cCcchhhhHHHHHHHHhhhcCCcccHHHH
Q 002041 599 HLVEALSMVITELPQ-VDAKKALEMLCLPVVTPLQEIINQGPEILQK----KHPRDLTVHIDRFAYIFRYVNHPEAVADA 673 (976)
Q Consensus 599 ~l~eai~~vi~~~p~-~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~----~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 673 (976)
.++||+|.++++.|+ +...+++..++.|++++|++++.+...+.+. ...+.+...+++++.+++.++. ++.+.
T Consensus 608 ~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~--~f~p~ 685 (1049)
T 3m1i_C 608 TFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGA--DFYPQ 685 (1049)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGG--GGHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhH--HHHHH
Confidence 999999999999985 5677999999999999999988653221110 0112344456677766666642 22222
Q ss_pred HHHHh----HHHHHHHHh-------hc----CCH--HHHHHHHHHHHHHHHH-------hhhhhhhhHHHHHHHHHHHHh
Q 002041 674 IQRLW----PIFKAIFDI-------RA----WDM--RTMESLCRACKYAVRT-------SKRFMGITIGAILEEIQGLYQ 729 (976)
Q Consensus 674 ~~~~~----~~l~~ll~~-------~~----~~~--~v~e~~~~~~~~~~~~-------~~~~~~~~l~~l~~~l~~~~~ 729 (976)
+..++ .++...... -+ ..+ ...+.+...+.++++. ++..+.|++|++++.+...|+
T Consensus 686 ~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~~~ 765 (1049)
T 3m1i_C 686 LGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYM 765 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 222111100 00 001 1122222222222222 244566889999999999998
Q ss_pred hcCCcc-----HHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhhhcCcccCCCCCccHHHHHHHHHHHHhhCCCccc
Q 002041 730 QHQQPC-----FLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFI 804 (976)
Q Consensus 730 ~~~~~~-----~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~ 804 (976)
+ +.++ ++++++.++..+|.. +.+.+..++..+++++++++. ++++++||++++||.|+++++++||..++
T Consensus 766 ~-~~~~~~~~~~l~l~~~ii~~~~~~--~~~~l~~i~~~l~~~~~~~i~--~~~~~~pd~~~~~f~ll~~i~~~~~~~l~ 840 (1049)
T 3m1i_C 766 N-NVPDARDAEVLNCMTTVVEKVGHM--IPQGVILILQSVFECTLDMIN--KDFTEYPEHRVEFYKLLKVINEKSFAAFL 840 (1049)
T ss_dssp H-SCGGGCCTHHHHHHHHHHHHHGGG--CHHHHHHHHHHHHHHHHHHHS--SCSSSSHHHHHHHHHHHHHHHHHCTHHHH
T ss_pred h-CCcccccHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHh--cchhhCHHHHHHHHHHHHHHHHhCHHHHH
Confidence 6 3445 999999999999954 778899999999999999887 45788999999999999999999999987
Q ss_pred C-c-CChHHHHHHHHHhcccCCchhHHHHHHHHHHhhcccCCCCchhhHHHHHHHHhhchHHHHHHHHHHcccCCCCCCc
Q 002041 805 P-S-SVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRL 882 (976)
Q Consensus 805 ~-~-~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~l~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~~~~~~ 882 (976)
+ + ..+..++++++.+++.+|+++.+++++||..++++.+....+ +..+.++..+|..++..++..+++..+++.+
T Consensus 841 ~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~~~~~~---~~~~~f~~~~~~~l~~~~~~~l~~~~h~s~~ 917 (1049)
T 3m1i_C 841 ELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNV---PFANEFHKNYFFIFVSETFFVLTDSDHKSGF 917 (1049)
T ss_dssp HSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHSCSC---HHHHHHHHHHHHHHHHHHHHHHHSTTCGGGH
T ss_pred cCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHHHHHHHHHHHhcchHhhhH
Confidence 4 3 348999999999999999999999999999999875321121 2366788899999999999999999999999
Q ss_pred ccHHHHHHHHHHHh---------------------hHHHHHHHHHHH-hhCCCCCCCHHHHHHHHHHHHHHhcCCCchhh
Q 002041 883 ETVTYALLALTRAY---------------------GVRSLEWAKESV-SLIPLTALAEVERSRFLQALSEAASGVDVNAA 940 (976)
Q Consensus 883 ~~~~~~L~~l~~~~---------------------~~~~~~wl~~~l-~~~p~~~~~~~~k~~f~~~l~~~~~~~~~~~~ 940 (976)
+..+++|+.+.... ...+++||.+.+ +.|| +++++++++|++.++..+ ++..+|
T Consensus 918 ~~~~~~l~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~f~~~l~~~~--~~~~~f 993 (1049)
T 3m1i_C 918 SKQALLLMKLISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFP--HLTSEQIASFLSALTKQY--KDLVVF 993 (1049)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSCSSCGGGSSTTCCHHHHHHHHHHHHHHHHCT--TSCHHHHHHHHHHHHHCT--TCHHHH
T ss_pred HHHHHHHHHHHHHHhcCcccccccCccccCCCCCcHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHcc--CCHHHH
Confidence 99999999997632 236788998888 6787 689999999999999864 678889
Q ss_pred hHHHHHHHHHHHhh
Q 002041 941 MAPVEELSDVCRRN 954 (976)
Q Consensus 941 ~~~l~~F~~~cr~~ 954 (976)
|+.+||||..||+.
T Consensus 994 ~~~~rdf~~~~~~~ 1007 (1049)
T 3m1i_C 994 KGTLRDFLVQIKEV 1007 (1049)
T ss_dssp HHHHHHHHHHHTSS
T ss_pred HHHHHHHhHhhhhh
Confidence 99999999999977
No 7
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=100.00 E-value=4.1e-62 Score=623.25 Aligned_cols=888 Identities=14% Similarity=0.164 Sum_probs=622.4
Q ss_pred hHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCCCChhhHH
Q 002041 3 LQNTVKEALNALYHH-PDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVR 81 (976)
Q Consensus 3 ~~~~v~~al~~ly~~-~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~~ 81 (976)
..++|.+++..+|++ +|++.|++|+++|++|+++|++|..+..+|.+++.+.++||||+++|+++|+++|..++++++.
T Consensus 9 ~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~ 88 (1204)
T 3a6p_A 9 LCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKV 88 (1204)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 346689999999876 5888999999999999999999998888776446788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCcHHHHHHHHhhccccccc
Q 002041 82 GLQDSLNTLLKKFHK----GPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFN 157 (976)
Q Consensus 82 ~lr~~Ll~~l~~~~~----~~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l~~~~~~~~~~L~~L~~l~EE~~~ 157 (976)
.||+.+++++.+... .++.||+|+|.++|.++.+.+|+.||+ +++++++.+++++......+.+|..|+||+..
T Consensus 89 ~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~--ll~~L~~~~~~~~~~~e~~L~iL~~L~Eev~~ 166 (1204)
T 3a6p_A 89 YLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPD--MLIELDTLSKQGETQTELVMFILLRLAEDVVT 166 (1204)
T ss_dssp HHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTT--HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchH--HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcc
Confidence 999999999987532 578999999999999999999999999 99999999877666678999999999999876
Q ss_pred ccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhh---------------------hHHHHHHHHHHHHhhhccCCCCCcc
Q 002041 158 YKIAARPERRRQFEKELTSQMEVALSTLTACLHI---------------------NELKEQVLEAFASWLRLKHRIPGSV 216 (976)
Q Consensus 158 ~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~---------------------~~~~~~~l~~~~sWi~~~~~i~~~~ 216 (976)
.+. ....||+.+++.+..+++.|++++..+++. .++...+++|+.+|+.| +|.+.
T Consensus 167 ~~~-~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~W---i~~~~ 242 (1204)
T 3a6p_A 167 FQT-LPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDW---VSMSH 242 (1204)
T ss_dssp SCC-SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTT---SCHHH
T ss_pred ccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhc---cCHHH
Confidence 532 345788889999999999999887776643 24778899999999998 56555
Q ss_pred cccc--hhHHHHHhcCCCcchHHHHHHHHHHHhhhhccCCCCCccCchhHHHHHHHH-HHhhHHHhh--h----ccCCHH
Q 002041 217 LASH--PLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQ-IMSLKAHLT--D----SSKDEE 287 (976)
Q Consensus 217 l~~~--~l~~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~-v~~l~~~~~--~----~~~d~e 287 (976)
+... .+++.++..+.+++++.+|++||++++++.+. .+++.+++..+.+. +-.+..... . .++|.+
T Consensus 243 i~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~-----~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e 317 (1204)
T 3a6p_A 243 ITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGK-----LEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYV 317 (1204)
T ss_dssp HHTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCCSC-----HHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHH
T ss_pred HHhccchHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCC-----hhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHH
Confidence 5433 49999999999999999999999999986642 12333344322111 111222211 1 222457
Q ss_pred HHHHHHHHHHHHhhHHHHHHhc-----CCchhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccccccCcccch
Q 002041 288 DVKAIARLFADMGDSYVELIAT-----GSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASA 362 (976)
Q Consensus 288 ~~~~~~~l~~~~~~~~~~~l~~-----~~~~~~~ll~~lL~~~~~~~~~vs~~~l~fW~~l~~~l~~~~~~~~~~~~~~~ 362 (976)
+.+.+|++++++|+.+...+.+ .++.+..++++++.++.||+.+++..+++||+.+.+....
T Consensus 318 ~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~------------- 384 (1204)
T 3a6p_A 318 FLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEIL------------- 384 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTT-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccc-------------
Confidence 8899999999999987776653 3456889999999999999999999999999988764321
Q ss_pred HHHHHHHHHhhHHHHHHHHHHH---HhhccCCCCCCC----CC------h-hhhHHhHhhhhcccccCCccchhhhhhhh
Q 002041 363 EAERSRRLQVFRSAYESLVSLV---SFRVQYPQDYQD----LS------L-EDLKEFKHTRYDLACCSSSTLTESVMLIA 428 (976)
Q Consensus 363 ~~~~~~~~~~~~~~~~~Ll~~l---~~k~~~p~d~~~----~~------~-d~~~~f~~~R~~~~~~~~~~~~~~~~~~~ 428 (976)
.....+.+++.+|++++ +.||+||++.+. |. + |+.+.|.+||++
T Consensus 385 -----~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~----------------- 442 (1204)
T 3a6p_A 385 -----SRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQ----------------- 442 (1204)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHH-----------------
T ss_pred -----cccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHH-----------------
Confidence 00134789999999999 999999985432 21 1 223579999999
Q ss_pred hhhHHHHHHhhcChhHHHHHHHHHHHHhHhhc--------------------CCCCCCcchhhHHHHHHHHhhcccCccc
Q 002041 429 VADVLIDAASVLGGDATLKILYIKFVEGVACC--------------------GNKHNEWRPAEAALFCIRAISTYVSVVE 488 (976)
Q Consensus 429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~--------------------~~~~~~w~~~Ea~L~~l~~i~e~~~~~~ 488 (976)
++|++++++.+.+ +..+..+.+.+.+.+.+. ...+..|...||..+++.++++++....
T Consensus 443 ~~d~l~~i~~v~p-~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~ 521 (1204)
T 3a6p_A 443 QGEVMRLACRLDP-KTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTL 521 (1204)
T ss_dssp HHHHHHHHHHHCH-HHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCH-HHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999998886 557766666665443321 0113468899999999999988872211
Q ss_pred ------ccchHHHhhhccCC-CCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCC-------------h
Q 002041 489 ------AEVMPQVMALLPKL-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-------------E 548 (976)
Q Consensus 489 ------~~~l~~l~~~l~~~-~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~-------------~ 548 (976)
+..++++++.+.++ +.||.++.+.+.++|+|++|+..||+ ++++++++++.++.++ +
T Consensus 522 e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~---~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k 598 (1204)
T 3a6p_A 522 NREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPE---FLPQVFSKLFSSVTFETVEESKAPRTRAVR 598 (1204)
T ss_dssp CTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGG---GHHHHHHHHHHHHHCCTTCSTTSCCCHHHH
T ss_pred ccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCch---HHHHHHHHHHHhhccCCcccccccccHHHH
Confidence 13467888887765 46999999999999999999999997 9999999999776441 2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCC-CCHHhHHHHHHHHHHHHhcCChH-HHHHHHHHhhhH
Q 002041 549 DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLK-VSAEDSLHLVEALSMVITELPQV-DAKKALEMLCLP 626 (976)
Q Consensus 549 ~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~-l~~~~~~~l~eai~~vi~~~p~~-~~~~~l~~ll~p 626 (976)
+++.+||.+|.+||++|+..|.||+++|.+.+..++..+ . ++..++..++++++.+...++++ +...+++.++.|
T Consensus 599 ~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~---~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P 675 (1204)
T 3a6p_A 599 NVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNE---LLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAP 675 (1204)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHST---TTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCc---ccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999988753 4 78999999999999886565555 445779999999
Q ss_pred HHHHHHH-----HHhcCC----------Cc-----ccccCc--chhhhHHHHHHHHhhhc--------------------
Q 002041 627 VVTPLQE-----IINQGP----------EI-----LQKKHP--RDLTVHIDRFAYIFRYV-------------------- 664 (976)
Q Consensus 627 ~~~~l~~-----~~~~~~----------~~-----~~~~~~--~~~~~~l~~l~~~~~~~-------------------- 664 (976)
++++|.+ .++... .. .+.... ..+...+..+....+..
T Consensus 676 ~~~~w~~~~~~~~~s~~~~f~~~~G~~~~~~~~~~~d~~~~~r~~l~~~~~~l~~~l~r~~~~~~~~~~~~~gf~~~~~~ 755 (1204)
T 3a6p_A 676 VASIWLSQDMHRVLSDVDAFIAYVGTDQKSCDPGLEDPCGLNRARMSFCVYSILGVVKRTCWPTDLEEAKAGGFVVGYTS 755 (1204)
T ss_dssp HHHHHSCHHHHHHHHCHHHHHHHHTSSCC--CTTCCTHHHHHHHHHHHHHHHHHHHHHHCCCCSSHHHHHHTTCEEEECS
T ss_pred HHHHHccHHHHHhhcCHHHHHHHhCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhcCCCChhhhhcCCceeccCC
Confidence 9999874 232211 00 000001 11222222222222221
Q ss_pred C-C---cccHHHHHHHHhHHHHHHHHhhc--CCHHHHHHHH-------------HHHHHHHHHh-hhhh-hhhHHHHHHH
Q 002041 665 N-H---PEAVADAIQRLWPIFKAIFDIRA--WDMRTMESLC-------------RACKYAVRTS-KRFM-GITIGAILEE 723 (976)
Q Consensus 665 ~-~---~~~~~~~~~~~~~~l~~ll~~~~--~~~~v~e~~~-------------~~~~~~~~~~-~~~~-~~~l~~l~~~ 723 (976)
. . .+|+.+.+..+||.+.+++..+. +++++.+.++ ++...++... ..+. .+..+...+.
T Consensus 756 ~~~p~~~~p~~~~i~~ilP~ll~Ll~~~~~l~~p~~~~~l~~~~~~~~~~~~~er~~~~g~~~~~~~~~~~~~~~~~~~~ 835 (1204)
T 3a6p_A 756 SGNPIFRNPCTEQILKLLDNLLALIRTHNTLYAPEMLAKMAEPFTKALDMLDAEKSAILGLPQPLLELNDSPVFKTVLER 835 (1204)
T ss_dssp SCCEEECCTTHHHHHHHHHHHHHHHHHHHHTTSHHHHTTSCGGGTTTTSCCHHHHHHHTCCCCCCCCTTCCCSCCCHHHH
T ss_pred CCCccccCchHHHHHHHhHHHHHHHHHHHHhcCcHhhhhcCHHHHHHHhccHHHHHHhcCCCcccccccccCCCcCcHHH
Confidence 0 1 26888899999999999999887 7899888877 4444332221 1111 1222355666
Q ss_pred HHHHHhhcCCccHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhhhcCcccCCCCCccHHHHHHHHHHHHhhCCCcc
Q 002041 724 IQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLF 803 (976)
Q Consensus 724 l~~~~~~~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~ 803 (976)
+-..+...+.+||..+.+. +..+|.+ ++.. .++-..+.+.+++.+.... ....+++++.+| ..++++||..+
T Consensus 836 l~~~~~~~re~~y~~lg~~-~~~l~~~--fy~~-~~l~~~l~~~~f~~l~~~~-~~~l~~li~~~~---~p~i~~CP~~~ 907 (1204)
T 3a6p_A 836 MQRFFSTLYENCFHILGKA-GPSMQQD--FYTV-EDLATQLLSSAFVNLNNIP-DYRLRPMLRVFV---KPLVLFCPPEH 907 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHCTT--TTTS-TTHHHHHHHHTTSSTTTSC-HHHHHHHHHHTH---HHHHHTCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHH-hhccccc--ccCC-cchHHHHHHHHHhcchhcc-HHHHHHHHHHHH---HHHHhcCCHHH
Confidence 6667777778888866443 3444544 2211 1111222333333332211 112234555544 67778888776
Q ss_pred cCc---CChHHHHHHHHHhcc-----c-----------------------------------------------------
Q 002041 804 IPS---SVFPSLVDCSMIGIT-----V----------------------------------------------------- 822 (976)
Q Consensus 804 ~~~---~~l~~~~~~~~~~l~-----~----------------------------------------------------- 822 (976)
..+ +++..+|..+...++ +
T Consensus 908 ~~~~l~plL~~lf~~~~~~L~~~W~~i~~~~~~~~~~~~~~~~~~~~E~~~e~llr~lTr~~~~ll~~~~~~~~~~~~~~ 987 (1204)
T 3a6p_A 908 YEALVSPILGPLFTYLHMRLSQKWQVINQRSLLCGEDEAADENPESQEMLEEQLVRMLTREVMDLITVCCVSKKGADHSS 987 (1204)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHBC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccc
Confidence 654 555555554322222 1
Q ss_pred --------------------------------CCchhHHHHHHHHHHhhcccCCCCc----hhh-HHHHHHHHh-----h
Q 002041 823 --------------------------------QHREASNSILTFLSDIFDLAKSCKG----EEF-LSVRDSVII-----P 860 (976)
Q Consensus 823 --------------------------------~~~~~~~~~~~fl~~l~~~~~~~~~----~~~-~~~~~~~~~-----~ 860 (976)
.++....+++.|+...+.|+.++.. ..+ ...++.++. +
T Consensus 988 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~~l~~~D~~~~~~~~~~~~~~~v~~~~~~~~~~~ 1067 (1204)
T 3a6p_A 988 APPADGDDEEMMATEVTPSAMAELTDLGKCLMKHEDVCTALLITAFNSLAWKDTLSCQRTTSQLCWPLLKQVLSGTLLAD 1067 (1204)
T ss_dssp ----------------------CBCHHHHHHHSSHHHHHHHHHHHHHHTTSSCHHHHHHHHHHTHHHHHTTSCSSCCCHH
T ss_pred cccccccccccccccccccchhhcchHHHHHhcCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHhcccCchH
Confidence 1222356677788888877532100 000 012232222 4
Q ss_pred chHHHHHHHHHHcc-cCCCCCCcccHHHHHHHHHHHhhHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhc-CCCch
Q 002041 861 RGASITRILIASLT-GALPSSRLETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAAS-GVDVN 938 (976)
Q Consensus 861 ~g~~lv~~ll~~l~-~~~~~~~~~~~~~~L~~l~~~~~~~~~~wl~~~l~~~p~~~~~~~~k~~f~~~l~~~~~-~~~~~ 938 (976)
.|..++..++.++. +..|.....+++.++..++..++..+. |+++++..+|. +++++.++|.+++..... .++.|
T Consensus 1068 ~~~~l~~~vl~~l~~~~~~~~~~~~l~~l~~~i~~~~~~~~~-~~~~vl~~lP~--i~~~~~~~f~~~l~~~~~~~~~~k 1144 (1204)
T 3a6p_A 1068 AVTWLFTSVLKGLQMHGQHDGCMASLVHLAFQIYEALRPRYL-EIRAVMEQIPE--IQKDSLDQFDCKLLNPSLQKVADK 1144 (1204)
T ss_dssp HHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHSTTTCS-THHHHHTTSSS--CCHHHHHHHHHHSSCC--------
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhCCCCc-cHHHHHHhCCC--CCHHHHHHHHHHHhcccccccchH
Confidence 58889989999987 787888889999999999998888777 99999999995 899999999998854332 24567
Q ss_pred hhhHHHHHHHHHHHhh
Q 002041 939 AAMAPVEELSDVCRRN 954 (976)
Q Consensus 939 ~~~~~l~~F~~~cr~~ 954 (976)
+-|.++++|...+||.
T Consensus 1145 ~qr~~~~~ll~~~~g~ 1160 (1204)
T 3a6p_A 1145 RRKDQFKRLIAGCIGK 1160 (1204)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHhcCC
Confidence 7899999999988886
No 8
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=1.2e-37 Score=393.90 Aligned_cols=728 Identities=13% Similarity=0.124 Sum_probs=471.0
Q ss_pred CchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCC------C
Q 002041 1 MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVE------E 74 (976)
Q Consensus 1 ~~~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~------~ 74 (976)
|.-.++|.+++... .++|++.| |+++|++++++|++|..+.+++.+++.+.++|++|+++||++|+++|. .
T Consensus 1 M~d~~~l~~~L~~~-~spd~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~ 77 (960)
T 1wa5_C 1 MSDLETVAKFLAES-VIASTAKT--SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHL 77 (960)
T ss_dssp CCHHHHHHHHHHHT-TSGGGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBS
T ss_pred CCcHHHHHHHHHHh-cCCCHHHH--HHHHHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCC
Confidence 77788899999885 46677777 999999999999999999999987667889999999999999999997 7
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC-CCcHHHHHHHHhhccc
Q 002041 75 LPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH-PEFVPGFLELLTVLPE 153 (976)
Q Consensus 75 l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l~~~-~~~~~~~L~~L~~l~E 153 (976)
++++++..||+.+++.+.. .++.||+|+|.+++.++.+.+|++||+ +++++++.++++ +......|.+|..+++
T Consensus 78 l~~~~k~~ik~~ll~~l~~---~~~~ir~~l~~~ia~ia~~d~p~~Wp~--ll~~L~~~l~s~~~~~~~~aL~~l~~i~~ 152 (960)
T 1wa5_C 78 LPANNVELIKKEIVPLMIS---LPNNLQVQIGEAISSIADSDFPDRWPT--LLSDLASRLSNDDMVTNKGVLTVAHSIFK 152 (960)
T ss_dssp SCHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHSTTTCTT--HHHHHHTTCCSSCTTHHHHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHhhCccchhH--HHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999988 578999999999999999998889999 999999998764 3456778888988888
Q ss_pred ccccccccCChhHHHHHHHHHHHhHHHHHHHHHHh---hhhh-----------HHHHHHHHHHHHhhhccCCCCCccccc
Q 002041 154 EVFNYKIAARPERRRQFEKELTSQMEVALSTLTAC---LHIN-----------ELKEQVLEAFASWLRLKHRIPGSVLAS 219 (976)
Q Consensus 154 E~~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~---l~~~-----------~~~~~~l~~~~sWi~~~~~i~~~~l~~ 219 (976)
+.... . .+++.+.+++..+....+.+++++... ++.+ +....+++++.+-+.. .+|..
T Consensus 153 ~~~~~-~-~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~--~~~~~---- 224 (960)
T 1wa5_C 153 RWRPL-F-RSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQ--DIPEF---- 224 (960)
T ss_dssp GGTTS-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSS--CCCHH----
T ss_pred HHHHh-h-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhc--cchHH----
Confidence 65321 1 123445566666777788777776544 3321 1223355555442221 12211
Q ss_pred chhHHHHHhcCCCcchHHHHHHHHHHHhhhhccCCCCCccC-chhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHH
Q 002041 220 HPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATV-NMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFAD 298 (976)
Q Consensus 220 ~~l~~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~-~~~~i~~l~~~v~~l~~~~~~~~~d~e~~~~~~~l~~~ 298 (976)
+ .+.+..++..+..++.........+.++ .... .+...+.+++.++.
T Consensus 225 ---~---------~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~--------------------~~~vk~~~~~~l~~ 272 (960)
T 1wa5_C 225 ---F---------EDNIQVGMGIFHKYLSYSNPLLEDPDETEHASV--------------------LIKVKSSIQELVQL 272 (960)
T ss_dssp ---H---------HHTHHHHHHHHHHHHSCCSCCCC------CCCH--------------------HHHHHHHHHHHHHH
T ss_pred ---H---------HHHHHHHHHHHHHHHcCCCCcccCCcccccccH--------------------HHHHHHHHHHHHHH
Confidence 0 0112333334444443211000000000 0000 01123466677777
Q ss_pred HhhHHHHHHhcCCchhHHHHHHHHhhcc-----CCCcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHhh
Q 002041 299 MGDSYVELIATGSDESMLIVHALLEVAS-----HPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVF 373 (976)
Q Consensus 299 ~~~~~~~~l~~~~~~~~~ll~~lL~~~~-----~~~~~vs~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (976)
+.+.+...+. +....+++.++..+. ..++.+...+++||..+.+.- ..+..+
T Consensus 273 l~~~~~~~f~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~--------------------~~~~~~ 329 (960)
T 1wa5_C 273 YTTRYEDVFG---PMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIP--------------------KYFEIF 329 (960)
T ss_dssp HHHHCHHHHH---HHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSH--------------------HHHGGG
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcH--------------------hHHHHH
Confidence 7776666553 245566666666553 235788899999998875421 223445
Q ss_pred H--HHHHHHH-HHHHhhccCCC-CCCCCChhhhHHhHhhhhcccccCCccchhhhhhhhhhhHHHHHHhhcChhHHHHHH
Q 002041 374 R--SAYESLV-SLVSFRVQYPQ-DYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKIL 449 (976)
Q Consensus 374 ~--~~~~~Ll-~~l~~k~~~p~-d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l 449 (976)
+ +++.+++ .+++..|.|++ |.+.|++|. ++| .|++... ... ...|.++++++..++...| +.+++.+
T Consensus 330 ~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp-~e~--i~~d~e~--~d~---~s~R~aa~~~L~~l~~~~~-~~v~~~~ 400 (960)
T 1wa5_C 330 NNESAMNNITEQIILPNVTLREEDVELFEDDP-IEY--IRRDLEG--SDT---DTRRRACTDFLKELKEKNE-VLVTNIF 400 (960)
T ss_dssp CSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCH-HHH--HHHHHHC---------CHHHHHHHHHHHHHHHCH-HHHHHHH
T ss_pred cCchHHHHHHHHHhHHhcCCCHHHHHHHhcCH-HHH--HHhccCc--ccc---cCcHHHHHHHHHHHHHHcc-hhHHHHH
Confidence 4 8999999 78999999975 556676542 222 1111100 000 0123348899999998888 6677777
Q ss_pred HHHHHHhHhhc-CCCCCCcchhhHHHHHHHHhhcccCc---cccc-----chHHH-----hhhccCC-CCcHHHHHHHHH
Q 002041 450 YIKFVEGVACC-GNKHNEWRPAEAALFCIRAISTYVSV---VEAE-----VMPQV-----MALLPKL-PQQPQLLQTVCL 514 (976)
Q Consensus 450 ~~~l~~~~~~~-~~~~~~w~~~Ea~L~~l~~i~e~~~~---~~~~-----~l~~l-----~~~l~~~-~~~~~v~~t~~~ 514 (976)
.+.+.+.+.+. .+++.+|+.+||++++++++++.... .... .+..+ ++.+..- |.||.||.++|+
T Consensus 401 l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~ 480 (960)
T 1wa5_C 401 LAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIK 480 (960)
T ss_dssp HHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHH
Confidence 76666554321 11246799999999999999875321 1111 22222 2223221 249999999999
Q ss_pred HHHhcHHHHhhCCCCcchHHHHHHHHHcccCCC-hHHHHHHHHHHHHHHHH-----------hhhhhhcCHHHHHHHHHH
Q 002041 515 TIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDD-----------CRKKLCGYLDGLYNVYRT 582 (976)
Q Consensus 515 ~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~-~~v~~~A~~al~~l~~~-----------~~~~L~~~l~~ll~~~~~ 582 (976)
++|+|++|+ +|+ ++.++++.+++++.++ ..|+.+||+||.+||+. ++..+.||++.+++.+..
T Consensus 481 ~lg~~~~~~--~~~---~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ 555 (960)
T 1wa5_C 481 YIYTFRNQL--TKA---QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIA 555 (960)
T ss_dssp HHHHTGGGS--CHH---HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHH
T ss_pred HHHHHHhhC--CHH---HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHH
Confidence 999999998 344 8999999999999875 35999999999999984 356789999999999999
Q ss_pred HhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhh
Q 002041 583 AVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFR 662 (976)
Q Consensus 583 ~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 662 (976)
+++..+.......+...++++++.++...+ ++..+|+..++..++..+....++.. ...-....+++|+.+++
T Consensus 556 ll~~~~~~~~~~~~~e~l~~al~~vv~~~~-~~~~p~~~~l~~~L~~~l~~~~~~~~------~~~~~~~~~e~l~~l~~ 628 (960)
T 1wa5_C 556 LILKHGSSPEKLAENEFLMRSIFRVLQTSE-DSIQPLFPQLLAQFIEIVTIMAKNPS------NPRFTHYTFESIGAILN 628 (960)
T ss_dssp HHHTTCCCHHHHTSCHHHHHHHHHHHHHHT-TTTGGGHHHHHHHHHHHHHHHTTSCC------CHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCCCcccccHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHhCCC------CcHHHHHHHHHHHHHHh
Confidence 886421000011255789999999999886 45567888888888888877644321 11222347899999988
Q ss_pred hcCCcccHHHHHHHHhHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH--HHHhhcC-CccHHHH
Q 002041 663 YVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQ--GLYQQHQ-QPCFLYL 739 (976)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~--~~~~~~~-~~~~L~l 739 (976)
. .+|+.+..+.+.+||++..+++.... ++.+.++.++..++... ..+.++++.+++.+. ..++... .+....+
T Consensus 629 ~-~~~~~~~~~~~~~~p~~~~iL~~~~~--~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 704 (960)
T 1wa5_C 629 Y-TQRQNLPLLVDSMMPTFLTVFSEDIQ--EFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLLAPNVWELKGNIPAVTRL 704 (960)
T ss_dssp T-SCGGGHHHHHHHHHHHHHHHHHTTCT--TTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTSGGGGCCTTTHHHHHHH
T ss_pred c-CCcchHHHHHHHHHHHHHHHHHhhhH--hhHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHcCHHHhcCCCCchhHHHH
Confidence 7 45678888899999999999987543 45566666666655543 233344444444444 3343321 1112233
Q ss_pred HHHHHHHhCCCCcchHHHHHHHHHHHHHHHhhhcCcccCCCCCccHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHh
Q 002041 740 SSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIG 819 (976)
Q Consensus 740 ~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 819 (976)
+...+...++. +.+ +.. +.+....++.. ..+| ...|.++..++..+|...+ .++++.++...+..
T Consensus 705 L~~~~~~~~~~--~~~-~~~----~l~~~~~~~~~-----~~~~--~~a~~ll~~i~~~~~~~~~-~~yl~~i~~~l~~~ 769 (960)
T 1wa5_C 705 LKSFIKTDSSI--FPD-LVP----VLGIFQRLIAS-----KAYE--VHGFDLLEHIMLLIDMNRL-RPYIKQIAVLLLQR 769 (960)
T ss_dssp HHHHHHHHGGG--CSC-SHH----HHHHHHHHHTC-----TTTH--HHHHHHHHHHHHHSCHHHH-GGGHHHHHHHHHHG
T ss_pred HHHHHHhChHH--HHH-HHH----HHHHHHHHhCC-----Cccc--chHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHH
Confidence 33333332211 111 111 11111111221 1244 7889999999999987722 24888999988888
Q ss_pred cccCCchhHH-HHHHHHHHhh
Q 002041 820 ITVQHREASN-SILTFLSDIF 839 (976)
Q Consensus 820 l~~~~~~~~~-~~~~fl~~l~ 839 (976)
++....+..+ +.+.|+..++
T Consensus 770 l~~~~~~~~~~~~l~~~~~~~ 790 (960)
T 1wa5_C 770 LQNSKTERYVKKLTVFFGLIS 790 (960)
T ss_dssp GGSSCCHHHHHHHHHHHHHHH
T ss_pred HhhCCcHhHHHHHHHHHHHHH
Confidence 8766544444 6666666655
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=8.2e-36 Score=373.60 Aligned_cols=768 Identities=13% Similarity=0.151 Sum_probs=520.2
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhc-CCCchHHHHHHHHHHHHHhhcCCCCCChhhHH
Q 002041 3 LQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVR 81 (976)
Q Consensus 3 ~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~-~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~~ 81 (976)
..+++.+++...+ ++|++.|++|+++|++++++|++|..+..++.. .+.+.++|++|+..|++.|+++|..++++.+.
T Consensus 11 ~~~~l~~~l~~~~-s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~ 89 (852)
T 4fdd_A 11 GLQQILQLLKESQ-SPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTD 89 (852)
T ss_dssp HHHHHHHHHHHHT-CSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHH
T ss_pred hHHHHHHHHHHHh-CcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHH
Confidence 4567788888775 569999999999999999999999999999985 46788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CcHHHHHHHHhhcccccccccc
Q 002041 82 GLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEVFNYKI 160 (976)
Q Consensus 82 ~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l~~~~-~~~~~~L~~L~~l~EE~~~~~~ 160 (976)
.+|+.+++.+.. .++.||++++.+++.++...+++.||+ +++.+.+.+++.. ......+..|..+.++.....
T Consensus 90 ~ik~~ll~~l~~---~~~~vr~~~a~~i~~ia~~~~~~~wp~--ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~- 163 (852)
T 4fdd_A 90 FIKSECLNNIGD---SSPLIRATVGILITTIASKGELQNWPD--LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEIL- 163 (852)
T ss_dssp HHHHHHHTTTTC---SSHHHHHHHHHHHHHHHHHTTTTTCTT--HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHH-
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHhcCccccHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHh-
Confidence 999999998753 678999999999999999888889999 9999999987643 345677878877777654210
Q ss_pred cCChhHHHHHHHHHHHhHHHHHHHHHHhhhh--hHHHHHHHHHHHHhhhccCCCCCcccccchhHHHHHhcCCCcchHHH
Q 002041 161 AARPERRRQFEKELTSQMEVALSTLTACLHI--NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEA 238 (976)
Q Consensus 161 ~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~--~~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~~~~~L~~~~~~~~ 238 (976)
.+ +.+....+.++..+...+.+ ++++..+++|+..++... +.
T Consensus 164 -----~~----~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~---~~------------------------ 207 (852)
T 4fdd_A 164 -----DS----DVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISR---TQ------------------------ 207 (852)
T ss_dssp -----HH----CSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTT---CH------------------------
T ss_pred -----ch----hhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc---cH------------------------
Confidence 00 00011133344444444443 356667777766554421 00
Q ss_pred HHHHHHHHhhhhccCCCCCccCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHHHHhcCCchhHHHH
Q 002041 239 SVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIV 318 (976)
Q Consensus 239 a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~v~~l~~~~~~~~~d~e~~~~~~~l~~~~~~~~~~~l~~~~~~~~~ll 318 (976)
...+.+..+++.+..+ ..++|.+..+..++.+..+++.++..+. ++...++
T Consensus 208 ---------------------~~~~~~~~~l~~l~~~-----~~d~~~~vr~~a~~~L~~l~~~~~~~~~---~~l~~l~ 258 (852)
T 4fdd_A 208 ---------------------ALMLHIDSFIENLFAL-----AGDEEPEVRKNVCRALVMLLEVRMDRLL---PHMHNIV 258 (852)
T ss_dssp ---------------------HHHTSHHHHHHHHHHH-----HTCCCHHHHHHHHHHHHHHHHHCHHHHG---GGHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHHH-----cCCCCHHHHHHHHHHHHHHHHhCHHHHH---HHHHHHH
Confidence 0001112222222111 1345666777888888888887777664 3567889
Q ss_pred HHHHhhccCCCcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCC-
Q 002041 319 HALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDL- 397 (976)
Q Consensus 319 ~~lL~~~~~~~~~vs~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~d~~~~- 397 (976)
+.++.++.++++++...+++||..+++.. .....++|++.++++.++.+|.|+++...|
T Consensus 259 ~~l~~~~~~~~~~vr~~a~e~l~~l~~~~--------------------~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~ 318 (852)
T 4fdd_A 259 EYMLQRTQDQDENVALEACEFWLTLAEQP--------------------ICKDVLVRHLPKLIPVLVNGMKYSDIDIILL 318 (852)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTTST--------------------THHHHHTTTHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHccCCcHHHHHHHHHHHHHHhcch--------------------hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHh
Confidence 99999999999999999999998876521 012345678889999999999987532111
Q ss_pred --C--hhh--hHHhH--hhhhcccccCCccchhhhhhhhhhhHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcch
Q 002041 398 --S--LED--LKEFK--HTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRP 469 (976)
Q Consensus 398 --~--~d~--~~~f~--~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~ 469 (976)
| +|+ .+.+. ..|+. .++++..+....| +.++..+.+.+.+.+. +.+|+.
T Consensus 319 ~~d~~ed~~~dd~~~~~~vr~~-----------------a~~~L~~la~~~~-~~~~~~l~~~l~~~l~-----~~~~~~ 375 (852)
T 4fdd_A 319 KGDVEGGSGGDDTISDWNLRKC-----------------SAAALDVLANVYR-DELLPHILPLLKELLF-----HHEWVV 375 (852)
T ss_dssp HC------------CCCCHHHH-----------------HHHHHHHHHHHHG-GGGHHHHHHHHHHHHT-----CSSHHH
T ss_pred cCCcccccccccccccchHHHH-----------------HHHHHHHHHHhcc-HHHHHHHHHHHHHHhc-----CCCHHH
Confidence 1 111 11111 22433 6778887777777 5677778887777653 468999
Q ss_pred hhHHHHHHHHhhcccCcccccchHHHhhhccC-CC-CcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCC
Q 002041 470 AEAALFCIRAISTYVSVVEAEVMPQVMALLPK-LP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS 547 (976)
Q Consensus 470 ~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~~-~~-~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~ 547 (976)
+++++++++.+++++...-..+++.+++.+.. +. +++.||.++++++|+|++|+...+. ..++..+++.+..++.++
T Consensus 376 R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~-~~~~~~ll~~L~~~L~d~ 454 (852)
T 4fdd_A 376 KESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP-DTYLKPLMTELLKRILDS 454 (852)
T ss_dssp HHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCT-TTTHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHhCC
Confidence 99999999999998765444667777776542 32 4899999999999999999976431 137899999998888654
Q ss_pred -hHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHH-HHHHHHHhhh
Q 002041 548 -EDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVD-AKKALEMLCL 625 (976)
Q Consensus 548 -~~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~-~~~~l~~ll~ 625 (976)
.+++..|+.||..+|+.++..+.||++.++..+...++. ...+....++++++.++..+++.. ..+|+..++.
T Consensus 455 ~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~-----~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p 529 (852)
T 4fdd_A 455 NKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSK-----YQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMP 529 (852)
T ss_dssp SHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHH-----hChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHH
Confidence 359999999999999999999999999999999998864 456677789999999998776542 2468888888
Q ss_pred HHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhh---------------cC
Q 002041 626 PVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIR---------------AW 690 (976)
Q Consensus 626 p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~---------------~~ 690 (976)
++++.+..+.+.. ..+...+++++.++..++. .+.++...+++.+..++... ..
T Consensus 530 ~l~~~~~~l~d~~---------~~~~~~~~~l~~i~~~~g~--~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 598 (852)
T 4fdd_A 530 PLIQKWNMLKDED---------KDLFPLLECLSSVATALQS--GFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAP 598 (852)
T ss_dssp HHHHHHHHSCTTC---------TTHHHHHHHHHHHHHHHGG--GGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCC
T ss_pred HHHHHHHhccccc---------HHHHHHHHHHHHHHHHHhH--hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCC
Confidence 8887765433211 1122467777877776642 33444444444333333221 12
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhhhhH--HHHHHHHHHHHhhcC---CccHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 002041 691 DMRTMESLCRACKYAVRTSKRFMGITI--GAILEEIQGLYQQHQ---QPCFLYLSSEVIKIFGSDPSCASYLHNLIEALF 765 (976)
Q Consensus 691 ~~~v~e~~~~~~~~~~~~~~~~~~~~l--~~l~~~l~~~~~~~~---~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~ 765 (976)
+.++...++.+++.+++.+|..+.+++ +.+++.+...+.... ...+..+++.++..++.. +.+.+..++..+.
T Consensus 599 d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~l~~~lp~l~ 676 (852)
T 4fdd_A 599 DKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQH--VKPCIADFMPILG 676 (852)
T ss_dssp CTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGG--TGGGHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHH
Confidence 456777888999999999999988887 677777776664321 124567778888777753 5555555443322
Q ss_pred HHHHhhhcCcccCCCCCccHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHhcccCC--chhHHHHHHHHHHhhcccC
Q 002041 766 KRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQH--REASNSILTFLSDIFDLAK 843 (976)
Q Consensus 766 ~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~~~~l~~~~~~~~~~l~~~~--~~~~~~~~~fl~~l~~~~~ 843 (976)
..+. .+++++.......++.+.+..+..+ .+++..++...+.-+..++ +.....++..+.++...+
T Consensus 677 ----~~l~-----~~~~~v~~~a~~alg~i~~~~~~~~--~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~- 744 (852)
T 4fdd_A 677 ----TNLN-----PEFISVCNNATWAIGEISIQMGIEM--QPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVC- 744 (852)
T ss_dssp ----HTCC-----TTSHHHHHHHHHHHHHHHHHHGGGG--GGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHC-
T ss_pred ----HHcC-----ccchHHHHHHHHHHHHHHHHhhHhH--HHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhC-
Confidence 2222 3456777777777777776654433 2355666666555554432 344556666666665321
Q ss_pred CCCchhhHHHHHHHHhhchHHHHHHHHHHcccCCCCCCcccHHHHHHHHHHHhhHHHHH---HHHHHHhhCCCCCCCHHH
Q 002041 844 SCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLE---WAKESVSLIPLTALAEVE 920 (976)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~~~~~~~~~~~~L~~l~~~~~~~~~~---wl~~~l~~~p~~~~~~~~ 920 (976)
+ +.+.++.+.++..++..+...-....-+..-.-|-.+.+.+|..... ++-.++.... ..+++-
T Consensus 745 ----~-------~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~~~~~--~~~~~l 811 (852)
T 4fdd_A 745 ----P-------QEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWI--NPKDDL 811 (852)
T ss_dssp ----H-------HHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHTCS--SCCHHH
T ss_pred ----H-------HHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHhcC--CCCHHH
Confidence 1 23445666677777777643222233444556777778888864322 2223444333 247888
Q ss_pred HHHHHHHHH
Q 002041 921 RSRFLQALS 929 (976)
Q Consensus 921 k~~f~~~l~ 929 (976)
++.|.+-+.
T Consensus 812 ~~~~~~~l~ 820 (852)
T 4fdd_A 812 RDMFCKILH 820 (852)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887764
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=4.9e-33 Score=350.08 Aligned_cols=695 Identities=13% Similarity=0.141 Sum_probs=480.2
Q ss_pred CchHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHhcC--hhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCC-----
Q 002041 1 MELQNTVKEALNAL-YHHPDDAVRMQADRWLQDFQHT--IDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDV----- 72 (976)
Q Consensus 1 ~~~~~~v~~al~~l-y~~~d~~~r~~A~~~L~~~q~s--~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w----- 72 (976)
|.. .++.+++..+ + ++|++.|++|+++|++++++ |++|..+.+++.+.+.+.++|++|+++|+++|+++|
T Consensus 1 Md~-~~l~~~L~~~~~-s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~ 78 (861)
T 2bpt_A 1 MST-AEFAQLLENSIL-SPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQ 78 (861)
T ss_dssp CCH-HHHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHH
T ss_pred CCH-HHHHHHHHHccc-CcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHH
Confidence 554 4689999887 5 66999999999999999986 999999999998755688999999999999998775
Q ss_pred ------CC-CChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccc-cccCCccchHHHHHhcCCC--CCcHH
Q 002041 73 ------EE-LPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISA-EDWGGGGIVNWLRDEMNSH--PEFVP 142 (976)
Q Consensus 73 ------~~-l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~~-~~W~~~~~~~~l~~~l~~~--~~~~~ 142 (976)
.. ++++++..+|+.+++.+.. .+..+|++++.+++.++...++ +.||+ +++.+.+.+++. +....
T Consensus 79 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~---~~~~vr~~~~~~l~~i~~~~~p~~~w~~--ll~~L~~~l~~~~~~~~r~ 153 (861)
T 2bpt_A 79 QFAQRWITQVSPEAKNQIKTNALTALVS---IEPRIANAAAQLIAAIADIELPHGAWPE--LMKIMVDNTGAEQPENVKR 153 (861)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHGGGTCCHH--HHHHHHHHTSTTSCHHHHH
T ss_pred HHHHhHhhhCCHHHHHHHHHHHHHHHCC---CchHHHHHHHHHHHHHHHhhCcccccHH--HHHHHHHHHhcCCCHHHHH
Confidence 54 9999999999999998765 6788999999999999998876 48998 999999998764 34567
Q ss_pred HHHHHHhhcccccccccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhh----hHHHHHHHHHHHHhhhccCCCCCcccc
Q 002041 143 GFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHI----NELKEQVLEAFASWLRLKHRIPGSVLA 218 (976)
Q Consensus 143 ~~L~~L~~l~EE~~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~----~~~~~~~l~~~~sWi~~~~~i~~~~l~ 218 (976)
..+.+|..+++++.... | .+..+.+.+++.+...+.+ ++++..+++|+..|+.+. ... +.
T Consensus 154 ~al~~l~~l~~~~~~~~-------~-----~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~---~~~-~~ 217 (861)
T 2bpt_A 154 ASLLALGYMCESADPQS-------Q-----ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFI---KNN-ME 217 (861)
T ss_dssp HHHHHHHHHHHTSSTTS-------S-----TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC---HHH-HT
T ss_pred HHHHHHHHHHHcCChhh-------h-----HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH---HHH-cc
Confidence 78899999998865310 0 1233456666666666654 368889999999988752 100 00
Q ss_pred cchhHHHHHhcCCCcchHHHHHHHHHHHhhhhccCCCCCccCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHH
Q 002041 219 SHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFAD 298 (976)
Q Consensus 219 ~~~l~~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~v~~l~~~~~~~~~d~e~~~~~~~l~~~ 298 (976)
.. ...+ .+++.+. .. ..+.+.+..+..++.+..
T Consensus 218 -------------~~--------------------------~~~~---~ll~~l~---~~--~~~~~~~~r~~a~~~l~~ 250 (861)
T 2bpt_A 218 -------------RE--------------------------GERN---YLMQVVC---EA--TQAEDIEVQAAAFGCLCK 250 (861)
T ss_dssp -------------SH--------------------------HHHH---HHHHHHH---HH--HTCSCHHHHHHHHHHHHH
T ss_pred -------------Ch--------------------------hHHH---HHHHHHH---HH--hcCCCHHHHHHHHHHHHH
Confidence 00 0000 0111110 00 123344455566677777
Q ss_pred HhhHHHHHHhcCCchhH-HHHHHHHhhccCCCcchhhhhHHHHHHHHHHhccccccccc-CcccchHHHHHHHHHhhHHH
Q 002041 299 MGDSYVELIATGSDESM-LIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISF-GNEASAEAERSRRLQVFRSA 376 (976)
Q Consensus 299 ~~~~~~~~l~~~~~~~~-~ll~~lL~~~~~~~~~vs~~~l~fW~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 376 (976)
+++.+...+. +.+. .+++.++..+..+++++...+++||..+.+.......+..- +..| .......+++
T Consensus 251 l~~~~~~~~~---~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 321 (861)
T 2bpt_A 251 IMSKYYTFMK---PYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSP------LQSYNFALSS 321 (861)
T ss_dssp HHHHHGGGCH---HHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCS------CCCCCHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCc------hhhHHHHHHH
Confidence 7666543332 2344 67777888888888999999999999988754210000000 0000 0001134667
Q ss_pred HHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhhcccccCCccchhhhhhhhhhhHHHHHHhhcChhHHHHHHHHHHHHh
Q 002041 377 YESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEG 456 (976)
Q Consensus 377 ~~~Ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~ 456 (976)
+..+++.++.++..+++.+ + .+++ ..|.. +.+++..++..+| +.++..+.+.+.+.
T Consensus 322 ~~~il~~ll~~l~~~~~d~--~---d~~~-~~r~~-----------------a~~~L~~l~~~~~-~~~~~~l~~~l~~~ 377 (861)
T 2bpt_A 322 IKDVVPNLLNLLTRQNEDP--E---DDDW-NVSMS-----------------AGACLQLFAQNCG-NHILEPVLEFVEQN 377 (861)
T ss_dssp HHHHHHHHHHHTTCCCCC---C---CCCC-HHHHH-----------------HHHHHHHHHHHHG-GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccc--c---cccC-cHHHH-----------------HHHHHHHHHHHcc-HhHHHHHHHHHHHH
Confidence 7888999998888765311 1 1122 34555 7788888888887 55777777777665
Q ss_pred HhhcCCCCCCcchhhHHHHHHHHhhcccC-cccccchHHHhhhcc-CC-CCcHHHHHHHHHHHHhcHHHHhhCCCCcchH
Q 002041 457 VACCGNKHNEWRPAEAALFCIRAISTYVS-VVEAEVMPQVMALLP-KL-PQQPQLLQTVCLTIGAYSKWFDAASSDPSIL 533 (976)
Q Consensus 457 ~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~-~~~~~~l~~l~~~l~-~~-~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l 533 (976)
+. +.+|+.+|+++++++.+++++. ..-.++++.+++.+. .+ .+++.+|.++++++|+|+.++..+-....++
T Consensus 378 l~-----~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 452 (861)
T 2bpt_A 378 IT-----ADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL 452 (861)
T ss_dssp TT-----CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH
T ss_pred cC-----CCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH
Confidence 42 4679999999999999998775 222345566666543 22 2489999999999999999997641001378
Q ss_pred HHHHHHHHcccCCChHHHHHHHHHHHHHHHHhh----hhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHh
Q 002041 534 ASVLSILTSGMSTSEDTAAAAALAFRHICDDCR----KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVIT 609 (976)
Q Consensus 534 ~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~----~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~ 609 (976)
+.+++.+..+++++.+++..|+.++..+|+.|+ ..+.||++.++..+.+.+... ..+...|..++++++.++.
T Consensus 453 ~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~---d~~~~vr~~a~~al~~l~~ 529 (861)
T 2bpt_A 453 PGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRI---DNEFNARASAFSALTTMVE 529 (861)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCS---CCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCc---CcchHHHHHHHHHHHHHHH
Confidence 999999888887765699999999999999986 568899999999998888642 1224678899999999999
Q ss_pred cCChHHHHHHHHHhhhHHHHHHHHHHhcCCC--c-cc-ccCcchhhhHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHH
Q 002041 610 ELPQVDAKKALEMLCLPVVTPLQEIINQGPE--I-LQ-KKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIF 685 (976)
Q Consensus 610 ~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~--~-~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll 685 (976)
..+. +..+++..++.++++.+...+..... . ++ +.........+++++.+++.++. .+.++...++|.+..++
T Consensus 530 ~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~l~~~l~~~l 606 (861)
T 2bpt_A 530 YATD-TVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS--SVEPVADMLMGLFFRLL 606 (861)
T ss_dssp HCCG-GGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG--GTGGGHHHHHHHHHHHH
T ss_pred Hcch-hhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHH
Confidence 9885 45688889999999988876422100 0 00 00011113466778888776642 34445567888777777
Q ss_pred HhhcCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCC---ccHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 002041 686 DIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQ---PCFLYLSSEVIKIFGSDPSCASYLHNLIE 762 (976)
Q Consensus 686 ~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~---~~~L~l~~~li~~~~~~~~~~~~l~~~~~ 762 (976)
+....+ .+.+.++.++..+....|..+.|+++.+++.+...+..... ...+.+++.++...|.. +.+.+..++.
T Consensus 607 ~~~~~~-~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~l~~ 683 (861)
T 2bpt_A 607 EKKDSA-FIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEED--FRRYSDAMMN 683 (861)
T ss_dssp HSTTGG-GTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGG--GHHHHHHHHH
T ss_pred ccCCCC-cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchh--ccchHHHHHH
Confidence 654322 67889999999988888988899999998888877743221 24577788888877743 5555554444
Q ss_pred HHHHHHHhhhcCcccCCCCCccHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHhcc
Q 002041 763 ALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGIT 821 (976)
Q Consensus 763 ~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~~~~l~~~~~~~~~~l~ 821 (976)
.+ +..+.. .+.++++....+..+..++...+..+.+ +++.++.....++.
T Consensus 684 ~l----~~~l~~---~~~~~~vr~~~~~~l~~l~~~~~~~~~~--~l~~~l~~l~~~~~ 733 (861)
T 2bpt_A 684 VL----AQMISN---PNARRELKPAVLSVFGDIASNIGADFIP--YLNDIMALCVAAQN 733 (861)
T ss_dssp HH----HHHHHC---TTCCTTHHHHHHHHHHHHHHHHGGGGHH--HHHHHHHHHHHHHT
T ss_pred HH----HHHhCC---ccccHhhhHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHh
Confidence 33 334432 2245889999999999999987765543 45566655555444
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=1.1e-28 Score=311.10 Aligned_cols=693 Identities=12% Similarity=0.107 Sum_probs=462.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhh-----------cCCC
Q 002041 7 VKEALNALYHHPDDAVRMQADRWLQDFQHT--IDAWQVADNLLHDATSNLETLIFCSQTLRSKVQ-----------RDVE 73 (976)
Q Consensus 7 v~~al~~ly~~~d~~~r~~A~~~L~~~q~s--~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~-----------~~w~ 73 (976)
+.+++..++ ++|++.|++|+++|++++++ |+.|..+..++.+++.+..+|++|+.+|++.+. ..|.
T Consensus 3 l~~~L~~~~-s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~ 81 (876)
T 1qgr_A 3 LITILEKTV-SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (876)
T ss_dssp HHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhc
Confidence 567777764 67999999999999999988 999999999998754678899999999999885 4588
Q ss_pred CCChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccc-cccCCccchHHHHHhcCCC--C-CcHHHHHHHHh
Q 002041 74 ELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISA-EDWGGGGIVNWLRDEMNSH--P-EFVPGFLELLT 149 (976)
Q Consensus 74 ~l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~~-~~W~~~~~~~~l~~~l~~~--~-~~~~~~L~~L~ 149 (976)
.++++.+..+|+.+++.+.. .+..+ ++++.+++.++...++ +.||+ +++.+.+.+++. . ......+..|.
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~---~~~~~-~~~~~~l~~i~~~~~~~~~w~~--ll~~l~~~l~~~~~~~~~r~~al~~l~ 155 (876)
T 1qgr_A 82 AIDANARREVKNYVLHTLGT---ETYRP-SSASQCVAGIACAEIPVNQWPE--LIPQLVANVTNPNSTEHMKESTLEAIG 155 (876)
T ss_dssp TSCHHHHHHHHHHHHHHTTT---CCSSS-CHHHHHHHHHHHHHGGGTCCTT--HHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCC---CcHHH-HHHHHHHHHHHHhhCcccccHH--HHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 99999999999999998765 44456 8999999999987765 79999 999999988654 2 34567888998
Q ss_pred hcccccccccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhhh----HHHHHHHHHHHHhhhccCCCCCcccccchhHHH
Q 002041 150 VLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLT 225 (976)
Q Consensus 150 ~l~EE~~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~----~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~ 225 (976)
.+++++.. +.+..+.+.++..+...+.++ +++..+++|+..|+.+. +.+ +.
T Consensus 156 ~l~~~~~~--------------~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~---~~~-~~------- 210 (876)
T 1qgr_A 156 YICQDIDP--------------EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT---KAN-FD------- 210 (876)
T ss_dssp HHHHHSCH--------------HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC---HHH-HT-------
T ss_pred HHHHhcCH--------------hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH---HHH-HH-------
Confidence 88887531 114456677777777766543 57888999999888741 110 00
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhhhccCCCCCccCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHH
Q 002041 226 ALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVE 305 (976)
Q Consensus 226 ~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~v~~l~~~~~~~~~d~e~~~~~~~l~~~~~~~~~~ 305 (976)
. ......+++.+.. . ..+.|.+.....++.+..+++.+..
T Consensus 211 ------~-----------------------------~~~~~~il~~l~~---~--~~~~~~~vr~~a~~~l~~l~~~~~~ 250 (876)
T 1qgr_A 211 ------K-----------------------------ESERHFIMQVVCE---A--TQCPDTRVRVAALQNLVKIMSLYYQ 250 (876)
T ss_dssp ------S-----------------------------HHHHHHHHHHHHH---H--TTCSSHHHHHHHHHHHHHHHHHSGG
T ss_pred ------h-----------------------------HHHHHHHHHHHHH---H--cCCCCHHHHHHHHHHHHHHHHHhHH
Confidence 0 0000001111100 0 1123344444555666665554433
Q ss_pred HHhcCCchhH-HHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccccccCcccchHHH-H--HHHHHhhHHHHHHHH
Q 002041 306 LIATGSDESM-LIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAE-R--SRRLQVFRSAYESLV 381 (976)
Q Consensus 306 ~l~~~~~~~~-~ll~~lL~~~~~~~~~vs~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~Ll 381 (976)
.+. +.+. .+++.++.....+++++...+++||..+.+...... .++++...+. . .......++++.+++
T Consensus 251 ~~~---~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 323 (876)
T 1qgr_A 251 YME---TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLA----IEASEAAEQGRPPEHTSKFYAKGALQYLV 323 (876)
T ss_dssp GCH---HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHSSCCSSCCCCHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHh----hhhccccccCCCccchhHHHHHHHHHHHh
Confidence 221 1233 567788887778888999999999999987532100 0000000000 0 001123455677888
Q ss_pred HHHHhhccCCCCCCCCChhhhHHhHhhhhcccccCCccchhhhhhhhhhhHHHHHHhhcChhHHHHHHHHHHHHhHhhcC
Q 002041 382 SLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCG 461 (976)
Q Consensus 382 ~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~ 461 (976)
..++..+...++.+ | .+++ ..|+. +.+++..++..+| +.+++.+.+.+.+.+.
T Consensus 324 ~~ll~~l~~~~~d~----~-~~~~-~~r~~-----------------a~~~l~~l~~~~~-~~~~~~~l~~l~~~l~--- 376 (876)
T 1qgr_A 324 PILTQTLTKQDEND----D-DDDW-NPCKA-----------------AGVCLMLLATCCE-DDIVPHVLPFIKEHIK--- 376 (876)
T ss_dssp HHHHHHTTCCCSSC----C-TTCC-CHHHH-----------------HHHHHHHHHHHHG-GGGHHHHHHHHHHHTT---
T ss_pred HHHHHHhhcccccc----c-cccc-HHHHH-----------------HHHHHHHHHHHCc-HhhHHHHHHHHHHHcc---
Confidence 88887776543211 1 1112 34555 7778888877777 4567777776665542
Q ss_pred CCCCCcchhhHHHHHHHHhhcccCcc-cccchHHHhhhcc-CCC-CcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHH
Q 002041 462 NKHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLP-KLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLS 538 (976)
Q Consensus 462 ~~~~~w~~~Ea~L~~l~~i~e~~~~~-~~~~l~~l~~~l~-~~~-~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~ 538 (976)
+.+|+.+++++++++.+++.+..+ -.++++.+++.+. .+. +++.||.++++++|+|++++........+++.+++
T Consensus 377 --~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~ 454 (876)
T 1qgr_A 377 --NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQ 454 (876)
T ss_dssp --CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHH
T ss_pred --CCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHH
Confidence 468999999999999999887632 2345556665543 222 47999999999999999998752100127999999
Q ss_pred HHHcccCCChHHHHHHHHHHHHHHHHhh--------------hhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHH
Q 002041 539 ILTSGMSTSEDTAAAAALAFRHICDDCR--------------KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEAL 604 (976)
Q Consensus 539 ~l~~~l~~~~~v~~~A~~al~~l~~~~~--------------~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai 604 (976)
.++.++.++.+++..|+.+|..+++.++ ..+.||++.++..+.+.+...+. -....+..+++++
T Consensus 455 ~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~--~~~~~r~~~~~~l 532 (876)
T 1qgr_A 455 CLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDG--HQNNLRSSAYESL 532 (876)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSS--CSTTHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCc--chhhHHHHHHHHH
Confidence 9999998876699999999999999987 34889999999999998864211 1234577899999
Q ss_pred HHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCC--cccc-cC-cchhhhHHHHHHHHhhhcCCcccHHHHHHHHhHH
Q 002041 605 SMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPE--ILQK-KH-PRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPI 680 (976)
Q Consensus 605 ~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~--~~~~-~~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 680 (976)
+.++...+. +..+++..++.++++.+...+.-... ++++ .. .......+.+++.+.+.++. ..+.++...++|.
T Consensus 533 ~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~l~~~ 610 (876)
T 1qgr_A 533 MEIVKNSAK-DCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQH-QDALQISDVVMAS 610 (876)
T ss_dssp HHHHHTCCS-TTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCH-HHHHTTHHHHHHH
T ss_pred HHHHHHCch-hhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhCh-hhhhHHHHHHHHH
Confidence 999999986 45678999999999988876432111 0000 00 00012345677777765531 3344555677777
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCC----ccHHHHHHHHHHHhCCCCcchHH
Q 002041 681 FKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQ----PCFLYLSSEVIKIFGSDPSCASY 756 (976)
Q Consensus 681 l~~ll~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~----~~~L~l~~~li~~~~~~~~~~~~ 756 (976)
+..++........+.+.++.+++.++...|..+.|+++.+++.+...+..... ...+++++.++...|.. +.+.
T Consensus 611 l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~ 688 (876)
T 1qgr_A 611 LLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSN--IIPF 688 (876)
T ss_dssp HHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGG--GHHH
T ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHh--hhhh
Confidence 76666543211357888999999988888888889888888877776664312 24677888888888743 5555
Q ss_pred HHHHHHHHHHHHHhhhcCcccCCCCCccHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHhccc
Q 002041 757 LHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITV 822 (976)
Q Consensus 757 l~~~~~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~~~~l~~~~~~~~~~l~~ 822 (976)
+..++.. ....+.. .+.++++....+..++.+....+..+.+ +++.++.....++..
T Consensus 689 ~~~i~~~----l~~~l~~---~~~~~~~~~~~~~~l~~i~~~~g~~~~~--~l~~~~~~l~~~~~~ 745 (876)
T 1qgr_A 689 CDEVMQL----LLENLGN---ENVHRSVKPQILSVFGDIALAIGGEFKK--YLEVVLNTLQQASQA 745 (876)
T ss_dssp HHHHHHH----HHHHHTC---TTSCGGGHHHHHHHHHHHHHHHGGGGGG--GHHHHHHHHHHHHTC
T ss_pred HHHHHHH----HHHHhCC---ccccHHhhHHHHHHHHHHHHHhchhHHH--HHHHHHHHHHHHHhc
Confidence 4444433 3344442 1245779999999999999876665443 667777766555543
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.91 E-value=5.3e-23 Score=238.81 Aligned_cols=431 Identities=14% Similarity=0.137 Sum_probs=296.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhc--ChhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcC-----------CC
Q 002041 7 VKEALNALYHHPDDAVRMQADRWLQDFQH--TIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRD-----------VE 73 (976)
Q Consensus 7 v~~al~~ly~~~d~~~r~~A~~~L~~~q~--s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~-----------w~ 73 (976)
+.+++..++ ++|++.|++|+++|+++++ .|+.|..+.+++.+++.+.++|++|+++|++.|.++ |.
T Consensus 3 l~~~L~~~~-s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~ 81 (462)
T 1ibr_B 3 LITILEKTV-SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (462)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhh
Confidence 567777764 6799999999999999998 599999999999875567899999999999999877 57
Q ss_pred CCChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccc-cccCCccchHHHHHhcCCC---CCcHHHHHHHHh
Q 002041 74 ELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISA-EDWGGGGIVNWLRDEMNSH---PEFVPGFLELLT 149 (976)
Q Consensus 74 ~l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~~-~~W~~~~~~~~l~~~l~~~---~~~~~~~L~~L~ 149 (976)
.++++.+..+|+.|++.+.+ .+..+ ++++.+++.++.+.++ +.||+ +++.+++.+++. +......+.+|.
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~---~~~~v-~~~~~~i~~ia~~~~~~~~w~~--ll~~L~~~l~~~~~~~~~r~~al~~l~ 155 (462)
T 1ibr_B 82 AIDANARREVKNYVLQTLGT---ETYRP-SSASQCVAGIACAEIPVNQWPE--LIPQLVANVTNPNSTEHMKESTLEAIG 155 (462)
T ss_dssp TSCHHHHHHHHHHHHHHTTC---CCSSS-CSHHHHHHHHHHHHGGGTCCTT--HHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCC---CCchh-hHHHHHHHHHHHHhccccccHH--HHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 89999999999999998765 45556 9999999999998766 48999 999999988654 335678899999
Q ss_pred hcccccccccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhh----hHHHHHHHHHHHHhhhccCCCCCcccccchhHHH
Q 002041 150 VLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHI----NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLT 225 (976)
Q Consensus 150 ~l~EE~~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~----~~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~ 225 (976)
.++++..... +..+.+.++..+...+.+ ++++..+++|+.+|+.+. ... ..
T Consensus 156 ~l~~~~~~~~--------------~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~---~~~-~~------- 210 (462)
T 1ibr_B 156 YICQDIDPEQ--------------LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT---KAN-FD------- 210 (462)
T ss_dssp HHHHHSCGGG--------------TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT---HHH-HT-------
T ss_pred HHHHhCCchh--------------hHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH---HHh-hh-------
Confidence 9998863211 223455666666666654 357888999999887641 000 00
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhhhccCCCCCccCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHH
Q 002041 226 ALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVE 305 (976)
Q Consensus 226 ~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~v~~l~~~~~~~~~d~e~~~~~~~l~~~~~~~~~~ 305 (976)
. . ...+. +++.+. . . ..+.|.+.....++.+..+++.+..
T Consensus 211 ------~-~-------------------------~~~~~---l~~~l~---~-~-~~~~~~~vr~~~~~~l~~l~~~~~~ 250 (462)
T 1ibr_B 211 ------K-E-------------------------SERHF---IMQVVC---E-A-TQCPDTRVRVAALQNLVKIMSLYYQ 250 (462)
T ss_dssp ------S-H-------------------------HHHHH---HHHHHH---H-H-TTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred ------h-h-------------------------HHHHH---HHHHHH---H-h-cCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 00011 111111 1 1 1234556667788888888877654
Q ss_pred HHhcCCchhH-HHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHhhHHHHHHHHHHH
Q 002041 306 LIATGSDESM-LIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLV 384 (976)
Q Consensus 306 ~l~~~~~~~~-~ll~~lL~~~~~~~~~vs~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l 384 (976)
.+. +.+. .+++.++.++...++++...+++||..+.+.......+..-+.+.... ........+++++..+++.+
T Consensus 251 ~~~---~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~p~l 326 (462)
T 1ibr_B 251 YME---TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRP-PEHTSKFYAKGALQYLVPIL 326 (462)
T ss_dssp GCT---TTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSC-SSCCCCCHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC-ccchhHHHHHHHhhhccHHH
Confidence 442 2344 677778887778889999999999999987642100000000000000 00011224456777888888
Q ss_pred HhhccCCCCCCCCChhhhHHhHhhhhcccccCCccchhhhhhhhhhhHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCC
Q 002041 385 SFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKH 464 (976)
Q Consensus 385 ~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~ 464 (976)
+..+.-.++ +.++ ++ ...|.. +++++..++..+| +.++..+.+.+.+.+. +
T Consensus 327 ~~~l~~~d~-d~~~----~~-~~~r~~-----------------a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~-----~ 377 (462)
T 1ibr_B 327 TQTLTKQDE-NDDD----DD-WNPCKA-----------------AGVCLMLLATCCE-DDIVPHVLPFIKEHIK-----N 377 (462)
T ss_dssp HHHTTCCCS-SCCT----TC-CSHHHH-----------------HHHHHHHHHHHTT-TTHHHHHHHHHHHHTT-----C
T ss_pred HHHHHhccc-cccc----cc-chHHHH-----------------HHHHHHHHHHhcc-HHHHHHHHHHHHHHhc-----C
Confidence 777654322 1111 11 134555 8889999999988 6688878877776652 5
Q ss_pred CCcchhhHHHHHHHHhhcccCcc-cccchHHHhhhcc-CC-CCcHHHHHHHHHHHHhcHHHHhhC---CCCcchHHHHHH
Q 002041 465 NEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLP-KL-PQQPQLLQTVCLTIGAYSKWFDAA---SSDPSILASVLS 538 (976)
Q Consensus 465 ~~w~~~Ea~L~~l~~i~e~~~~~-~~~~l~~l~~~l~-~~-~~~~~v~~t~~~~ig~y~~~~~~~---p~~~~~l~~~l~ 538 (976)
.+|+.+++++++++++++++..+ -.+.++.+++.+. .+ .+++.||.++++++|+|++|+... +. +++++++
T Consensus 378 ~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~---~l~~ll~ 454 (462)
T 1ibr_B 378 PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDV---YLAPLLQ 454 (462)
T ss_dssp SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTT---THHHHHH
T ss_pred CChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHH---HHHHHHH
Confidence 68999999999999999977632 2345555555543 22 248999999999999999999873 33 8999999
Q ss_pred HHHcccC
Q 002041 539 ILTSGMS 545 (976)
Q Consensus 539 ~l~~~l~ 545 (976)
.++.+++
T Consensus 455 ~Ll~~L~ 461 (462)
T 1ibr_B 455 CLIEGLS 461 (462)
T ss_dssp HHHCC--
T ss_pred HHHHHhc
Confidence 9988764
No 13
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.77 E-value=2e-15 Score=196.39 Aligned_cols=667 Identities=11% Similarity=0.096 Sum_probs=398.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh----------hHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCC
Q 002041 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTI----------DAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVE 73 (976)
Q Consensus 4 ~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~----------~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~ 73 (976)
...+.+.+..+ .++|++.|.+|...|.+.-+.+ .........|. +.+..+|..|+..|...+.
T Consensus 5 ~~~l~~lL~~l-~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~--d~~~~vR~~A~~~L~~l~~---- 77 (1230)
T 1u6g_C 5 SYHISNLLEKM-TSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE--DKNGEVQNLAVKCLGPLVS---- 77 (1230)
T ss_dssp CHHHHHHHHHT-TCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHT----
T ss_pred HhHHHHHHHhc-CCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHH----
Confidence 34577777776 6789999999998887765433 22333445554 4678899999999988765
Q ss_pred CCChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccc---------ccCCccchHHHHHhcCCCC--CcHH
Q 002041 74 ELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAE---------DWGGGGIVNWLRDEMNSHP--EFVP 142 (976)
Q Consensus 74 ~l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~~~---------~W~~~~~~~~l~~~l~~~~--~~~~ 142 (976)
.++++.+..+++.|++.+.. .+..+|...+.+|+.++...++. .|++ +++.+.+.+..++ ....
T Consensus 78 ~~~~~~~~~i~~~Ll~~l~d---~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~--llp~L~~~l~~~~~~~~~~ 152 (1230)
T 1u6g_C 78 KVKEYQVETIVDTLCTNMLS---DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKK--ITGRLTSAIAKQEDVSVQL 152 (1230)
T ss_dssp TSCHHHHHHHHHHHHHHTTC---SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHH--HHHHHHHHHSCCSCHHHHH
T ss_pred hCCHHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHH--HHHHHHHHHcCCCchHHHH
Confidence 35666667777777766543 55678999999999988776654 4887 8888888886322 3345
Q ss_pred HHHHHHhhcccccccccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhhh--HHHHHHHHHHHHhhhccCCCCCcccccc
Q 002041 143 GFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN--ELKEQVLEAFASWLRLKHRIPGSVLASH 220 (976)
Q Consensus 143 ~~L~~L~~l~EE~~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~--~~~~~~l~~~~sWi~~~~~i~~~~l~~~ 220 (976)
..+.+|..+++..... + ..+.+.+++.+...+.++ .++..+++|+...+... +...+ .
T Consensus 153 ~al~~l~~~~~~~~~~---l------------~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~---~~~~~--~ 212 (1230)
T 1u6g_C 153 EALDIMADMLSRQGGL---L------------VNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC---GNIVF--V 212 (1230)
T ss_dssp HHHHHHHHHHHHTCSS---C------------TTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C--T
T ss_pred HHHHHHHHHHHHhHhH---H------------HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhc---CHHHH--H
Confidence 6677777666554321 1 112345555555555542 46666677766665531 11100 0
Q ss_pred hhHHHHHhcCCCcchHHHHHHHHHHHhhhhccCCCCCccCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHh
Q 002041 221 PLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMG 300 (976)
Q Consensus 221 ~l~~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~v~~l~~~~~~~~~d~e~~~~~~~l~~~~~ 300 (976)
.+ +..+++.+ .... +.+.....+..+..++
T Consensus 213 ~~------------------------------------------l~~l~~~L-------~~~~-~~~~r~~a~~~l~~l~ 242 (1230)
T 1u6g_C 213 DL------------------------------------------IEHLLSEL-------SKND-SMSTTRTYIQCIAAIS 242 (1230)
T ss_dssp TH------------------------------------------HHHHHHHH-------HHTC-SSCSCTTHHHHHHHHH
T ss_pred HH------------------------------------------HHHHHHHh-------ccCC-chhHHHHHHHHHHHHH
Confidence 11 11111111 0000 0001111223333333
Q ss_pred hHHHHHHhcCCchhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHhhHHHHHHH
Q 002041 301 DSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESL 380 (976)
Q Consensus 301 ~~~~~~l~~~~~~~~~ll~~lL~~~~~~~~~vs~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 380 (976)
......+. +.+..+++.++..+..+++++...++..|..+.+... +.+.|++..+
T Consensus 243 ~~~~~~~~---~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~----------------------~~~~~~l~~l 297 (1230)
T 1u6g_C 243 RQAGHRIG---EYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP----------------------KEVYPHVSTI 297 (1230)
T ss_dssp HHSSGGGT---TSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT----------------------CCCHHHHHHH
T ss_pred HHhHHHHH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCh----------------------HHHHHhHHHH
Confidence 22211121 2345678888888888888888888888777766331 1346788999
Q ss_pred HHHHHhhccCCCCCCCCChhhh--HHhHhhhhcccccCCccchhhhhhhhhhhHHHHHHhhcChhHHHHHHHHHHHHhHh
Q 002041 381 VSLVSFRVQYPQDYQDLSLEDL--KEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVA 458 (976)
Q Consensus 381 l~~l~~k~~~p~d~~~~~~d~~--~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~ 458 (976)
++.++..+.+++++. .++|+. +++.+.- . ..|. .+ .. + .+..
T Consensus 298 i~~ll~~l~~d~~~~-~~~d~~~~~~~~~~~-~-----------------~~~~-~~----~~-~--------~~~~--- 341 (1230)
T 1u6g_C 298 INICLKYLTYDPNYN-YDDEDEDENAMDADG-G-----------------DDDD-QG----SD-D--------EYSD--- 341 (1230)
T ss_dssp HHHHTTCCCCC---------------------------------------------------------------------
T ss_pred HHHHHHHhCCCCCCC-Ccccccccccccccc-c-----------------ccch-hh----cc-c--------cccc---
Confidence 999999998866531 111100 0010000 0 0000 00 00 0 0100
Q ss_pred hcCCCCCCcchhhHHHHHHHHhhcccCcccccchHHHhhhcc-CCC-CcHHHHHHHHHHHHhcHHHHhhC-------C--
Q 002041 459 CCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KLP-QQPQLLQTVCLTIGAYSKWFDAA-------S-- 527 (976)
Q Consensus 459 ~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~-~~~-~~~~v~~t~~~~ig~y~~~~~~~-------p-- 527 (976)
.....|.-+++++-++..++...+..-.++++.++..+. .+. .++.+|..++..++.+..-.... +
T Consensus 342 ---~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 418 (1230)
T 1u6g_C 342 ---DDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAM 418 (1230)
T ss_dssp ------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC----------
T ss_pred ---ccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCcccc
Confidence 114679989999999999988544322344444444443 232 36788888888777665432210 0
Q ss_pred ----C----CcchHHHHHHHHHcccCCCh-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHH
Q 002041 528 ----S----DPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSL 598 (976)
Q Consensus 528 ----~----~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~ 598 (976)
. ...+++.+++.+.+.+++++ +++..++.+|..+++.++..+.+|++.++..+...+... .-....+.
T Consensus 419 ~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~---~~~~~v~~ 495 (1230)
T 1u6g_C 419 EQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDK---SSSSNLKI 495 (1230)
T ss_dssp --CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCS---SSCHHHHH
T ss_pred ccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCC---CCcchHHH
Confidence 0 01256777777777787654 588899999999999998888899999999999988642 11346788
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCC-----cccHHHH
Q 002041 599 HLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH-----PEAVADA 673 (976)
Q Consensus 599 ~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-----~~~~~~~ 673 (976)
..+..++.++...+++...+++..++..++..+ ... ..+....++..++.+++.++. +..+.++
T Consensus 496 ~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l----~d~-------~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~ 564 (1230)
T 1u6g_C 496 DALSCLYVILCNHSPQVFHPHVQALVPPVVACV----GDP-------FYKITSEALLVTQQLVKVIRPLDQPSSFDATPY 564 (1230)
T ss_dssp HHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHH----TCS-------SHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHH
T ss_pred HHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHH----ccc-------chHHHHHHHHHHHHHHHHhcCcccccccchHHH
Confidence 888888888888877767778877777765533 221 112223456777777766543 2356677
Q ss_pred HHHHhHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCC-ccHHHHHHHHHHHhCCCCc
Q 002041 674 IQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQ-PCFLYLSSEVIKIFGSDPS 752 (976)
Q Consensus 674 ~~~~~~~l~~ll~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~-~~~L~l~~~li~~~~~~~~ 752 (976)
+..++|.+...+.....+.++.+.+..+++.++...|..+.+++|.+++.+......... ...+..++.++..-++. +
T Consensus 565 ~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~-~ 643 (1230)
T 1u6g_C 565 IKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKI-D 643 (1230)
T ss_dssp HHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCC-C
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCcccc-c
Confidence 788999888877655667889999999999999999988888889888887766543210 12233444433211111 2
Q ss_pred chHHHHHHHHHHHHHHHhhhcCcccCCCCCccHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHhcccCCchhHHHHH
Q 002041 753 CASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSIL 832 (976)
Q Consensus 753 ~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 832 (976)
..+.+..++..+ ...+. +++++++......+.++++.++..+ ..+.+..++......+...+.+....++
T Consensus 644 ~~~~~~~i~~~L----~~~l~-----~~~~~~r~~a~~al~~l~~~~~~~~-~~~~v~~~l~~ll~ll~~~D~~~~~~~~ 713 (1230)
T 1u6g_C 644 LRPVLGEGVPIL----ASFLR-----KNQRALKLGTLSALDILIKNYSDSL-TAAMIDAVLDELPPLISESDMHVSQMAI 713 (1230)
T ss_dssp CHHHHHHHHHHH----HHHTT-----SCCHHHHHHHHHHHHHHHHHCCTTC-CHHHHHHHHTTCGGGSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHH----HHHHH-----hCCHHHHHHHHHHHHHHHhcccccC-CHHHHHHHHHHHHhhcCcchHHHHHHHH
Confidence 334444444332 22232 4567789999999999999988655 2223333333222333445667788999
Q ss_pred HHHHHhhcc
Q 002041 833 TFLSDIFDL 841 (976)
Q Consensus 833 ~fl~~l~~~ 841 (976)
.++..++..
T Consensus 714 ~~L~~l~~~ 722 (1230)
T 1u6g_C 714 SFLTTLAKV 722 (1230)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHHHh
Confidence 999999864
No 14
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.75 E-value=4e-14 Score=176.97 Aligned_cols=623 Identities=13% Similarity=0.096 Sum_probs=376.0
Q ss_pred HHHHHHHHHHHHhhhccCCCCCcccccchhHHHHHhcCCCc--chHHHHHHHHHHHhhhhccCCCCCccCchhHHHHHHH
Q 002041 193 ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE--ILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVP 270 (976)
Q Consensus 193 ~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~~~~~L~~~--~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~ 270 (976)
.++..+..|+..-.... +.+. ...+++.+++.++++ ..++.++.++..++....... +.......+..++|
T Consensus 105 ~vr~~~a~~i~~ia~~~---~~~~--wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~--~~~~~~~~~~~il~ 177 (852)
T 4fdd_A 105 LIRATVGILITTIASKG---ELQN--WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEIL--DSDVLDRPLNIMIP 177 (852)
T ss_dssp HHHHHHHHHHHHHHHHT---TTTT--CTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHH--HHCSSSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc---Cccc--cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHh--chhhhcchHHHHHH
Confidence 56777777777655542 1111 246788888877754 568899999999986543110 00000112344555
Q ss_pred HHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHHHHhcCCchhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhccc
Q 002041 271 QIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKR 350 (976)
Q Consensus 271 ~v~~l~~~~~~~~~d~e~~~~~~~l~~~~~~~~~~~l~~~~~~~~~ll~~lL~~~~~~~~~vs~~~l~fW~~l~~~l~~~ 350 (976)
.+.+. + .+.+.+.....++.+..+.......+. .....+++.++..+..++.++...++..+..+.+...
T Consensus 178 ~l~~~---l--~~~~~~vR~~A~~aL~~~~~~~~~~~~---~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~-- 247 (852)
T 4fdd_A 178 KFLQF---F--KHSSPKIRSHAVACVNQFIISRTQALM---LHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRM-- 247 (852)
T ss_dssp HHTTT---T--TCSSHHHHHHHHHHHHTTTTTTCHHHH---TSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCH--
T ss_pred HHHHH---h--cCCCHHHHHHHHHHHHHHHhcccHHHH---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCH--
Confidence 44332 1 123444433444444433321111111 1245677888888888888888888888766665321
Q ss_pred ccccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhhcccccCCccchhhhhhhhhh
Q 002041 351 DSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVA 430 (976)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~ 430 (976)
..+.+++..+++.++.-+.-+ + + +.|.. +.
T Consensus 248 --------------------~~~~~~l~~l~~~l~~~~~~~------~-~------~vr~~-----------------a~ 277 (852)
T 4fdd_A 248 --------------------DRLLPHMHNIVEYMLQRTQDQ------D-E------NVALE-----------------AC 277 (852)
T ss_dssp --------------------HHHGGGHHHHHHHHHHHHTCS------S-H------HHHHH-----------------HH
T ss_pred --------------------HHHHHHHHHHHHHHHHHccCC------c-H------HHHHH-----------------HH
Confidence 123455556666665443211 1 1 12333 33
Q ss_pred hHHHHHHh------hcChhHHHHHHHHHHHHhHh---------hcC---C-CC----CCcchhhHHHHHHHHhhcccCcc
Q 002041 431 DVLIDAAS------VLGGDATLKILYIKFVEGVA---------CCG---N-KH----NEWRPAEAALFCIRAISTYVSVV 487 (976)
Q Consensus 431 d~l~~~~~------~l~~~~~l~~l~~~l~~~~~---------~~~---~-~~----~~w~~~Ea~L~~l~~i~e~~~~~ 487 (976)
+.+..++. .+. .++..++..+.+.+. ... . .. .+|.-..++.-+++.+++..+
T Consensus 278 e~l~~l~~~~~~~~~~~--~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-- 353 (852)
T 4fdd_A 278 EFWLTLAEQPICKDVLV--RHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-- 353 (852)
T ss_dssp HHHHHHTTSTTHHHHHT--TTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--
T ss_pred HHHHHHhcchhHHHHHH--HHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--
Confidence 33333221 111 122222222222110 000 0 01 579989999999999998775
Q ss_pred cccchHHHhhhccC-C-CCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCCh-HHHHHHHHHHHHHHHH
Q 002041 488 EAEVMPQVMALLPK-L-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDD 564 (976)
Q Consensus 488 ~~~~l~~l~~~l~~-~-~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~ 564 (976)
+..++.+++.+.. + ..++.+|.+++.++|..++.....-. .+++.+++.+...+++++ .|+..|+.++.++++.
T Consensus 354 -~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~--~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 354 -DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMI--PYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp -GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHG--GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred -HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 2456666666542 1 23799999999999999875543211 278899999999998764 5999999999999998
Q ss_pred hhhh-hhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCccc
Q 002041 565 CRKK-LCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQ 643 (976)
Q Consensus 565 ~~~~-L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~ 643 (976)
+... ..+++..++..+...+.. -+...|.....+++.++...+.+ ..+++..++. .+..+++...
T Consensus 431 ~~~~~~~~~~~~ll~~L~~~L~d-----~~~~vr~~a~~aL~~l~~~~~~~-l~~~l~~ll~----~L~~~l~~~~---- 496 (852)
T 4fdd_A 431 VVSQPPDTYLKPLMTELLKRILD-----SNKRVQEAACSAFATLEEEACTE-LVPYLAYILD----TLVFAFSKYQ---- 496 (852)
T ss_dssp HHHSCTTTTHHHHHHHHHHHHTC-----SSHHHHHHHHHHHHHHHHHHGGG-GGGGHHHHHH----HHHHHHHHCC----
T ss_pred hccchHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHHhhHh-hHhHHHHHHH----HHHHHHHHhC----
Confidence 7653 568899999888887753 24678999999999998776543 3455544444 4444444331
Q ss_pred ccCcchhhhHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 002041 644 KKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAW-DMRTMESLCRACKYAVRTSKRFMGITIGAILE 722 (976)
Q Consensus 644 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~-~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~ 722 (976)
.+.....+++++.++...+..-...+++..++|.+......... +.++ ..+++++..+...+|..+.|++++++.
T Consensus 497 ---~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~-~~~~~~l~~i~~~~g~~~~~~~~~i~~ 572 (852)
T 4fdd_A 497 ---HKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDL-FPLLECLSSVATALQSGFLPYCEPVYQ 572 (852)
T ss_dssp ---HHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTH-HHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHH-HHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 12333456777777766543222245778889888877665543 3344 478999999999999988888888776
Q ss_pred HHHHHHhhc----------C----------CccHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhhhcCcccCCCCC
Q 002041 723 EIQGLYQQH----------Q----------QPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRP 782 (976)
Q Consensus 723 ~l~~~~~~~----------~----------~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~p 782 (976)
.+...+... + ..+.+++++.++..+|.+ +.+.+.+ ..++...+..+. +..+
T Consensus 573 ~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~--~~~~~~~--~~~~~~l~~~l~-----~~~~ 643 (852)
T 4fdd_A 573 RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGN--IEQLVAR--SNILTLMYQCMQ-----DKMP 643 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGG--GHHHHHT--CCHHHHHHHHTT-----CSSH
T ss_pred HHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHh--HHHHhcC--CcHHHHHHHHhC-----CCCh
Confidence 544433221 1 134568889999988854 4444310 112222333333 3458
Q ss_pred ccHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHhcccCCchhHHHHHHHHHHhhcccCCCCchhhHHHHHHHHhhch
Q 002041 783 DVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRG 862 (976)
Q Consensus 783 D~~~~~f~l~~~~~~~~p~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~l~~~~~~~~~~~~~~~~~~~~~~~g 862 (976)
+++++.+.+++.+.+.++..+.+ ++..++......+...+....+.++..+..+...... + +.++-
T Consensus 644 ~vr~~a~~~l~~l~~~~~~~~~~--~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~-~-----------~~p~~ 709 (852)
T 4fdd_A 644 EVRQSSFALLGDLTKACFQHVKP--CIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI-E-----------MQPYI 709 (852)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTGG--GHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGG-G-----------GGGGT
T ss_pred hHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhH-h-----------HHHHH
Confidence 89999999999999998876554 6777888888888777777777888877777654311 1 22333
Q ss_pred HHHHHHHHHHccc-CCCCCCcccHHHHHHHHHHHhhHHHHHHHHHHH----hhCCCCCCCHHHHHHHHHHHHHH
Q 002041 863 ASITRILIASLTG-ALPSSRLETVTYALLALTRAYGVRSLEWAKESV----SLIPLTALAEVERSRFLQALSEA 931 (976)
Q Consensus 863 ~~lv~~ll~~l~~-~~~~~~~~~~~~~L~~l~~~~~~~~~~wl~~~l----~~~p~~~~~~~~k~~f~~~l~~~ 931 (976)
..++..++..+.. ..+++..++.+..+.++...+|+.....+.+.+ ..+|.. -+.++|+.-.+.+...
T Consensus 710 ~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~-~d~~e~~~a~~~l~~l 782 (852)
T 4fdd_A 710 PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNI-RDNEEKDSAFRGICTM 782 (852)
T ss_dssp HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTS-CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccc-cccHHHHHHHHHHHHH
Confidence 3444555554422 345677888999999999998865544333332 345532 2455677666555444
No 15
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=99.53 E-value=5e-12 Score=131.95 Aligned_cols=227 Identities=16% Similarity=0.247 Sum_probs=196.9
Q ss_pred hhhHHHHHHHHHHHHhhc----CCccHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhhhcCcccCCCCCccHHHHH
Q 002041 714 GITIGAILEEIQGLYQQH----QQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCF 789 (976)
Q Consensus 714 ~~~l~~l~~~l~~~~~~~----~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pD~~~~~f 789 (976)
..++|++++.++.+|+++ +.+..|.+.+.+|.++|+. +.+.+..+++.++.+|+.++. .++.++||.+..||
T Consensus 68 ~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~--i~~~vp~Il~~VFe~TL~MI~--~df~eyPehR~~Ff 143 (321)
T 1w9c_A 68 ENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGH--ITAEIPQIFDAVFECTLNMIN--KDFEEYPEHRTNFF 143 (321)
T ss_dssp HHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGG--GGGGHHHHHHHHHHHHHHHHS--STTTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHh--cccccChHHHHHHH
Confidence 567899999999999874 3578999999999999976 788899999999999999998 67999999999999
Q ss_pred HHHHHHHhhCCCccc--CcCChHHHHHHHHHhcccCCchhHHHHHHHHHHhhcccCCCCchhhHHHHHHHHhhchHHHHH
Q 002041 790 LLASRCIRYCPQLFI--PSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITR 867 (976)
Q Consensus 790 ~l~~~~~~~~p~~~~--~~~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~l~~~~~~~~~~~~~~~~~~~~~~~g~~lv~ 867 (976)
.|+..+..+|+..++ +++.+..++++.++|.+..+|+....+++.+..+++.... .+ +..+++.+.+...++.
T Consensus 144 ~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~--~~---~~~~~Fy~~fy~~il~ 218 (321)
T 1w9c_A 144 LLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQ--EE---AAAQSFYQTYFCDILQ 218 (321)
T ss_dssp HHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH--CH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhc--Ch---HHHHHHHHHHHHHHHH
Confidence 999999999998876 4667999999999999999999999999999999986421 12 3577888899999999
Q ss_pred HHHHHcccCCCCCCcccHHHHHHHHHHHh-----------------hHHHHHHHHHHH-hhCCCCCCCHHHHHHHHHHHH
Q 002041 868 ILIASLTGALPSSRLETVTYALLALTRAY-----------------GVRSLEWAKESV-SLIPLTALAEVERSRFLQALS 929 (976)
Q Consensus 868 ~ll~~l~~~~~~~~~~~~~~~L~~l~~~~-----------------~~~~~~wl~~~l-~~~p~~~~~~~~k~~f~~~l~ 929 (976)
.+|..++...+.+.+...+.+|..|.... ....++|+.+.+ +.|| ++++++.+.|++.++
T Consensus 219 ~if~VlTDs~Hk~gF~~q~~iL~~lf~~ve~~~i~~pl~~~~~~~n~~~v~~~l~~lL~~~Fp--~l~~~qi~~fv~glf 296 (321)
T 1w9c_A 219 HIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKISTSLNPGNPVNNQIFLQEYVANLLKSAFP--HLQDAQVKLFVTGLF 296 (321)
T ss_dssp HHHHHHHSSSCCTTHHHHHHHHHHHHHHHHTTCCCSCSCSSSCCCHHHHHHHHHHHHHHHHCT--TSCHHHHHHHHHHHH
T ss_pred HHHHHHhCchhhccHHHHHHHHHHHHHHHHcCccccccCCCCCcccHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHH
Confidence 99999999999999999999999997322 124667888777 5799 789999999999999
Q ss_pred HHhcCCCchhhhHHHHHHHHHHHh
Q 002041 930 EAASGVDVNAAMAPVEELSDVCRR 953 (976)
Q Consensus 930 ~~~~~~~~~~~~~~l~~F~~~cr~ 953 (976)
.. .++..+||..+|||....|.
T Consensus 297 ~~--~~d~~~Fk~~lrDFLIqiKE 318 (321)
T 1w9c_A 297 SL--NQDIPAFKEHLRDFLVQIKE 318 (321)
T ss_dssp HT--TTCHHHHHHHHHHHHHHHHT
T ss_pred Hc--cCCHHHHHHHHHHHHHHHHH
Confidence 85 47889999999999988775
No 16
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.52 E-value=1.7e-09 Score=135.31 Aligned_cols=402 Identities=7% Similarity=-0.010 Sum_probs=251.2
Q ss_pred hHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCC
Q 002041 314 SMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQD 393 (976)
Q Consensus 314 ~~~ll~~lL~~~~~~~~~vs~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~d 393 (976)
...+++.+...+..+++.+...++..+..+.+.. ....+.+++.++++.++..+.-|.
T Consensus 367 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~---------------------~~~~~~~~l~~il~~l~~~l~d~~- 424 (861)
T 2bpt_A 367 LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGP---------------------DKVQRTYYVHQALPSILNLMNDQS- 424 (861)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS---------------------CHHHHHHHHHHHHHHHHHGGGCSC-
T ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCC---------------------CHHHHHHHHHHHHHHHHHHcCCCc-
Confidence 4456777777777777777666665543332110 012345677777877776553211
Q ss_pred CCCCChhhhHHhHhhhhcccccCCccchhhhhhhhhhhHHHHHHhhcCh----hHHHHHHHHHHHHhHhhcCCCCCCcch
Q 002041 394 YQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGG----DATLKILYIKFVEGVACCGNKHNEWRP 469 (976)
Q Consensus 394 ~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~----~~~l~~l~~~l~~~~~~~~~~~~~w~~ 469 (976)
...|.. +..++..++..+++ ..+++.+++.+.+.+. + ++.-
T Consensus 425 ------------~~vr~~-----------------a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~-----~-~~~v 469 (861)
T 2bpt_A 425 ------------LQVKET-----------------TAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQ-----D-HPKV 469 (861)
T ss_dssp ------------HHHHHH-----------------HHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHT-----S-CHHH
T ss_pred ------------HHHHHH-----------------HHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhc-----c-ChHH
Confidence 123333 33444444444332 3355556665555442 2 2777
Q ss_pred hhHHHHHHHHhhcccC----cccccchHHHhhhcc----CCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHH
Q 002041 470 AEAALFCIRAISTYVS----VVEAEVMPQVMALLP----KLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILT 541 (976)
Q Consensus 470 ~Ea~L~~l~~i~e~~~----~~~~~~l~~l~~~l~----~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~ 541 (976)
..+++++++.+.+.+. ..-.++++.+++.+. ....++.+|..++.++|......... ...++..+++.++
T Consensus 470 ~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~--~~~~~~~l~~~l~ 547 (861)
T 2bpt_A 470 ATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT--VAETSASISTFVM 547 (861)
T ss_dssp HHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG--GHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh--hHHHHHHHHHHHH
Confidence 8899999999988775 222466677666543 22235789999999999887654332 1123444444333
Q ss_pred cccCC----------------ChHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCH-HhHHHHHHHH
Q 002041 542 SGMST----------------SEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSA-EDSLHLVEAL 604 (976)
Q Consensus 542 ~~l~~----------------~~~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~-~~~~~l~eai 604 (976)
..+.. ...++..++.++..+++.++..+.|+++.++..+...++.. .. ..+...+.++
T Consensus 548 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~-----~~~~v~~~~~~~l 622 (861)
T 2bpt_A 548 DKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKK-----DSAFIEDDVFYAI 622 (861)
T ss_dssp HHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHST-----TGGGTHHHHHHHH
T ss_pred HHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccC-----CCCcHHHHHHHHH
Confidence 33221 11377899999999999999999999999999999888642 12 5688888899
Q ss_pred HHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHH
Q 002041 605 SMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAI 684 (976)
Q Consensus 605 ~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l 684 (976)
+.++...+. ...+++..++..++..+ +... ......+++.++.+.+.++ ..+.++...++|.+...
T Consensus 623 ~~l~~~~~~-~~~~~l~~i~~~l~~~l----~~~~-------~~vr~~a~~~l~~l~~~~~--~~~~~~~~~l~~~l~~~ 688 (861)
T 2bpt_A 623 SALAASLGK-GFEKYLETFSPYLLKAL----NQVD-------SPVSITAVGFIADISNSLE--EDFRRYSDAMMNVLAQM 688 (861)
T ss_dssp HHHHHHHGG-GGHHHHHHHHHHHHHHH----HCTT-------SHHHHHHHHHHHHHHHHTG--GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh-hHHHHHHHHHHHHHHHh----cccc-------HHHHHHHHHHHHHHHHHhc--hhccchHHHHHHHHHHH
Confidence 988887653 45577777777666555 2211 1122235677777777654 34566677888877777
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcC--------------CccHHHHHHHHHHHhCCC
Q 002041 685 FDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQ--------------QPCFLYLSSEVIKIFGSD 750 (976)
Q Consensus 685 l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~--------------~~~~L~l~~~li~~~~~~ 750 (976)
+..-..+.++.+.+..+++.+....|..+.|+++.+++.+.......+ ...++..++.++...|..
T Consensus 689 l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~ 768 (861)
T 2bpt_A 689 ISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDK 768 (861)
T ss_dssp HHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 665323467999999999999999999999999999988877665321 135677788888777753
Q ss_pred CcchHHHHHHHHHHHHHHHhhhcCcccCC-C-CCccHHHHHHHHHHHHhhC
Q 002041 751 PSCASYLHNLIEALFKRTTCLLTSIEEFT-S-RPDVADDCFLLASRCIRYC 799 (976)
Q Consensus 751 ~~~~~~l~~~~~~l~~~~~~~l~~~~~~~-~-~pD~~~~~f~l~~~~~~~~ 799 (976)
.+.+...+..++......+. +.+ . +.+++..-+..+..+....
T Consensus 769 ---~~~~~~~~~~i~~~l~~~~~---d~~~~~~~~vr~~a~~~l~~l~~~~ 813 (861)
T 2bpt_A 769 ---PEALFPYVGTIFQFIAQVAE---DPQLYSEDATSRAAVGLIGDIAAMF 813 (861)
T ss_dssp ---HHHHGGGHHHHHHHHHHHHH---CHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHHHHHHHHc---CcccCCcHHHHHHHHHHHHHHHHHc
Confidence 12222222222222222222 100 1 5679999999999999877
No 17
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.49 E-value=6.3e-10 Score=139.61 Aligned_cols=346 Identities=14% Similarity=0.180 Sum_probs=229.9
Q ss_pred CCCcchhhHHHHHHHHhhcccCcccccchHHHhhhccC-C-CCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHH
Q 002041 464 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-L-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILT 541 (976)
Q Consensus 464 ~~~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~~-~-~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~ 541 (976)
+.+|..+.++..+++.+++.+.. ..++.+++.+.. + ..++.+|.+++.++|.++...... ....+++.+++.++
T Consensus 339 ~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~-~~~~~~~~~l~~l~ 414 (876)
T 1qgr_A 339 DDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS-QLKPLVIQAMPTLI 414 (876)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH-HHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHCcH---hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHH
Confidence 45799999999999999988763 456667666532 2 247999999999999988644310 00026778888888
Q ss_pred cccCCCh-HHHHHHHHHHHHHHHHhhhhh--hcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCC------
Q 002041 542 SGMSTSE-DTAAAAALAFRHICDDCRKKL--CGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP------ 612 (976)
Q Consensus 542 ~~l~~~~-~v~~~A~~al~~l~~~~~~~L--~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p------ 612 (976)
..+.++. .|+.+|+.++.++++.+...+ .++++.++..+...+.. +...+.....+++.++...+
T Consensus 415 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~------~~~v~~~a~~al~~l~~~~~~~~~~~ 488 (876)
T 1qgr_A 415 ELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA------EPRVASNVCWAFSSLAEAAYEAADVA 488 (876)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS------CHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHHHHHhhhccccc
Confidence 8887764 599999999999999988764 58999999888887742 25667888888888886642
Q ss_pred -------hHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHH
Q 002041 613 -------QVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIF 685 (976)
Q Consensus 613 -------~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll 685 (976)
.+...+++. +++..+.+.+..... + ........+++++.+.+..+. ...+++..++|.+...+
T Consensus 489 ~~~~~~~~~~l~~~~~----~il~~L~~~l~~~~~--~--~~~~r~~~~~~l~~l~~~~~~--~~~~~~~~l~~~l~~~l 558 (876)
T 1qgr_A 489 DDQEEPATYCLSSSFE----LIVQKLLETTDRPDG--H--QNNLRSSAYESLMEIVKNSAK--DCYPAVQKTTLVIMERL 558 (876)
T ss_dssp TSCCCCCCCSSTTTHH----HHHHHHHHHTTSCSS--C--STTHHHHHHHHHHHHHHTCCS--TTHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhHhHH----HHHHHHHHHHhCcCc--c--hhhHHHHHHHHHHHHHHHCch--hhHHHHHHHHHHHHHHH
Confidence 112234444 444444455543321 0 011113467888888876642 45556677777766665
Q ss_pred Hhh--------c-CC----HHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHhhcC-----CccHHHHHHHHHHH
Q 002041 686 DIR--------A-WD----MRTMESLCRACKYAVRTSK-RFMGITIGAILEEIQGLYQQHQ-----QPCFLYLSSEVIKI 746 (976)
Q Consensus 686 ~~~--------~-~~----~~v~e~~~~~~~~~~~~~~-~~~~~~l~~l~~~l~~~~~~~~-----~~~~L~l~~~li~~ 746 (976)
... . .| .++.+.+|.++..++..+| ..+.|+++.+++.+...+.... ....+.+++.++..
T Consensus 559 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~ 638 (876)
T 1qgr_A 559 QQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEV 638 (876)
T ss_dssp HHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHH
Confidence 542 1 12 3466788999999988888 8888999988888877766532 12457778888887
Q ss_pred hCCCCcchHHHHHHHHHHHHHHHhhhcCcccCCCCCccHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHhccc--CC
Q 002041 747 FGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITV--QH 824 (976)
Q Consensus 747 ~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~~~~l~~~~~~~~~~l~~--~~ 824 (976)
.|.. +.+.+..++..+ ...+.. .++++++...+..+..+++..+..+. +.++.++...+..+.. .+
T Consensus 639 ~~~~--~~~~~~~~~~~l----~~~l~~----~~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~~i~~~l~~~l~~~~~~ 706 (876)
T 1qgr_A 639 LGGE--FLKYMEAFKPFL----GIGLKN----YAEYQVCLAAVGLVGDLCRALQSNII--PFCDEVMQLLLENLGNENVH 706 (876)
T ss_dssp HGGG--GGGGHHHHHHHH----HHHHHH----CTTHHHHHHHHHHHHHHHHHHGGGGH--HHHHHHHHHHHHHHTCTTSC
T ss_pred HHhh--HHHHHHHHHHHH----HHHHcC----cchHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHhCCcccc
Confidence 7754 555555544332 233331 14678999999999999886654332 3456677766666665 34
Q ss_pred chhHHHHHHHHHHhhcc
Q 002041 825 REASNSILTFLSDIFDL 841 (976)
Q Consensus 825 ~~~~~~~~~fl~~l~~~ 841 (976)
++....++..+..++..
T Consensus 707 ~~~~~~~~~~l~~i~~~ 723 (876)
T 1qgr_A 707 RSVKPQILSVFGDIALA 723 (876)
T ss_dssp GGGHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 56667778888877653
No 18
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.25 E-value=3.1e-08 Score=128.77 Aligned_cols=558 Identities=10% Similarity=0.074 Sum_probs=318.4
Q ss_pred HHHHHhhhh-hHHHHHHHHHHHHhhhccCCCCCcccccchhHHHHHhcCCC--cchHHHHHHHHHHHhhhhccCCCCCcc
Q 002041 183 STLTACLHI-NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHS--EILSEASVNVISELIHYSAAGSSGGAT 259 (976)
Q Consensus 183 ~~l~~~l~~-~~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~~~~~L~~--~~~~~~a~~~l~~ii~~~~~~~~~~~~ 259 (976)
+++....+. ++++..+.+-+...+... ....+.-....++..++..|.+ ++.+..|+.++..+.....
T Consensus 10 ~lL~~l~s~d~~~R~~A~~~L~~~l~~~-~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~-------- 80 (1230)
T 1u6g_C 10 NLLEKMTSSDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK-------- 80 (1230)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC--------
T ss_pred HHHHhcCCCCHhHHHHHHHHHHHHHccc-ccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCC--------
Confidence 344443332 367777777776655432 1111111223567778888865 4678999999999886331
Q ss_pred CchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHHHHhcC---CchhHHHHHHHHhhcc-CCCcchhhh
Q 002041 260 VNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATG---SDESMLIVHALLEVAS-HPEYDIASM 335 (976)
Q Consensus 260 ~~~~~i~~l~~~v~~l~~~~~~~~~d~e~~~~~~~l~~~~~~~~~~~l~~~---~~~~~~ll~~lL~~~~-~~~~~vs~~ 335 (976)
.+.+..+++.+.. .+ .+++.......+..+..++......-... ......+++.++..+. .++..+...
T Consensus 81 --~~~~~~i~~~Ll~---~l--~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~ 153 (1230)
T 1u6g_C 81 --EYQVETIVDTLCT---NM--LSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLE 153 (1230)
T ss_dssp --HHHHHHHHHHHHH---HT--TCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHH
T ss_pred --HHHHHHHHHHHHH---Hh--cCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHH
Confidence 1233344443321 22 12333333344444444433211100000 0135677888888877 577888899
Q ss_pred hHHHHHHHHHHhcccccccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhhccccc
Q 002041 336 TFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACC 415 (976)
Q Consensus 336 ~l~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~ 415 (976)
++..|..+.+.... .+.|++.+++..++..+.-|+ ...|..
T Consensus 154 al~~l~~~~~~~~~----------------------~l~~~~~~ll~~l~~~L~~~~-------------~~vR~~---- 194 (1230)
T 1u6g_C 154 ALDIMADMLSRQGG----------------------LLVNFHPSILTCLLPQLTSPR-------------LAVRKR---- 194 (1230)
T ss_dssp HHHHHHHHHHHTCS----------------------SCTTTHHHHHHHHGGGGGCSS-------------HHHHHH----
T ss_pred HHHHHHHHHHHhHh----------------------HHHHHHHHHHHHHHHHHcCCc-------------HHHHHH----
Confidence 99998888764321 122445566666665543211 135555
Q ss_pred CCccchhhhhhhhhhhHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcccccchHHH
Q 002041 416 SSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQV 495 (976)
Q Consensus 416 ~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l 495 (976)
+...+..+....+ +.+++.+.+.+.+.+.. ..++..+..++-+++.+++.++..-.++++.+
T Consensus 195 -------------a~~al~~l~~~~~-~~~~~~~l~~l~~~L~~----~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l 256 (1230)
T 1u6g_C 195 -------------TIIALGHLVMSCG-NIVFVDLIEHLLSELSK----NDSMSTTRTYIQCIAAISRQAGHRIGEYLEKI 256 (1230)
T ss_dssp -------------HHHHHHHHTTTC-----CTTHHHHHHHHHHH----TCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTH
T ss_pred -------------HHHHHHHHHHhcC-HHHHHHHHHHHHHHhcc----CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5566666665555 32333334444333322 12255667788899988887765434455555
Q ss_pred hhhccC-C-CCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCC---------------------------
Q 002041 496 MALLPK-L-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST--------------------------- 546 (976)
Q Consensus 496 ~~~l~~-~-~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~--------------------------- 546 (976)
++.+.+ + ..++.+|.+++.+++.++...... ...+++.+++.++..+..
T Consensus 257 ~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~ 334 (1230)
T 1u6g_C 257 IPLVVKFCNVDDDELREYCIQAFESFVRRCPKE--VYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQG 334 (1230)
T ss_dssp HHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC--CHHHHHHHHHHHTTCCCCC--------------------------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH--HHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhh
Confidence 554421 1 236778999999998877644321 123778888877665531
Q ss_pred -----------ChHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChH-
Q 002041 547 -----------SEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQV- 614 (976)
Q Consensus 547 -----------~~~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~- 614 (976)
..+++..|+.++..++...+..+.++++.++..+...+.. -..+.|..++++++.++...+..
T Consensus 335 ~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d-----~~~~Vr~~a~~~l~~l~~~~~~~~ 409 (1230)
T 1u6g_C 335 SDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKE-----REENVKADVFHAYLSLLKQTRPVQ 409 (1230)
T ss_dssp ----------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSC-----SSSHHHHHHHHHHHHHHHHHCCC-
T ss_pred cccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCC-----CchHHHHHHHHHHHHHHHHhcccc
Confidence 0136888999999998854444556666555554333321 23567888899998888764320
Q ss_pred -------------HHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCCcccHHHHHHHHhHHH
Q 002041 615 -------------DAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIF 681 (976)
Q Consensus 615 -------------~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l 681 (976)
.....+..++..++..+.+.+.... .+.....+..++.++..+. ..+.+.+.+++|.+
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~-------~~vr~~~~~~L~~l~~~~~--~~l~~~l~~ll~~l 480 (1230)
T 1u6g_C 410 SWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKS-------VKTRQCCFNMLTELVNVLP--GALTQHIPVLVPGI 480 (1230)
T ss_dssp -----------CCCHHHHHHHHTTHHHHHHHHHTTCSC-------HHHHHHHHHHHHHHHHHST--TTTGGGHHHHHHHH
T ss_pred ccccCccccccccchHHHHHHHhhHHHHHHHHHhccCC-------HHHHHHHHHHHHHHHHHch--hhhHHHHHHHHHHH
Confidence 1124555666667666666655321 1111235666676666542 22334567788887
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHhhcCC---ccHHHHHHHHHHHhCC-----CCc
Q 002041 682 KAIFDIRAWDMRTMESLCRACKYAVRTSKRF-MGITIGAILEEIQGLYQQHQQ---PCFLYLSSEVIKIFGS-----DPS 752 (976)
Q Consensus 682 ~~ll~~~~~~~~v~e~~~~~~~~~~~~~~~~-~~~~l~~l~~~l~~~~~~~~~---~~~L~l~~~li~~~~~-----~~~ 752 (976)
...+.....+.++.+.++..+...+...|+. +.|+++.+++.+...+..... ...+..++.++..+|. ...
T Consensus 481 ~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~ 560 (1230)
T 1u6g_C 481 IFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFD 560 (1230)
T ss_dssp HHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred HHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccc
Confidence 7777654334578888888888887766554 566666666666665544221 2357788888888886 123
Q ss_pred chHHHHHHHHHHHHHHHhhhcCcccCCCCCccHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHhcccCCchhHHHHH
Q 002041 753 CASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSIL 832 (976)
Q Consensus 753 ~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 832 (976)
+.+.+..++..++ ..+. ..+.++++.......++.++......+. +.+..+++.....+... ..-..++
T Consensus 561 ~~~~~~~ll~~ll----~~l~---~~d~~~~vr~~a~~~lg~L~~~~g~~~~--~~~~~~l~~L~~~l~~e--~~r~~~~ 629 (1230)
T 1u6g_C 561 ATPYIKDLFTCTI----KRLK---AADIDQEVKERAISCMGQIICNLGDNLG--SDLPNTLQIFLERLKNE--ITRLTTV 629 (1230)
T ss_dssp CHHHHHHHHHHHH----HHHS---CSSSCHHHHHHHHHHHHHHHHHTGGGCC--THHHHHHHHHHHHTTSS--SHHHHHH
T ss_pred hHHHHHHHHHHHH----HHHh---ccCCCHHHHHHHHHHHHHHHHHhCchhh--hhHHHHHHHHHHHhccc--hhHHHHH
Confidence 4555555554433 3343 1356677888888889999988766553 35667777655555432 2344566
Q ss_pred HHHHHhhc
Q 002041 833 TFLSDIFD 840 (976)
Q Consensus 833 ~fl~~l~~ 840 (976)
..+..+..
T Consensus 630 ~al~~i~~ 637 (1230)
T 1u6g_C 630 KALTLIAG 637 (1230)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 66766664
No 19
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.21 E-value=5.7e-08 Score=115.66 Aligned_cols=562 Identities=10% Similarity=0.056 Sum_probs=320.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc---ChhHHHHHHHHhh-cCCCchHHHHHHHHHHHHHhhcCCCCCChhh
Q 002041 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQH---TIDAWQVADNLLH-DATSNLETLIFCSQTLRSKVQRDVEELPSEA 79 (976)
Q Consensus 4 ~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~---s~~aw~~~~~lL~-~~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~ 79 (976)
...+...+..+ .++|+..|..|-+.|..+-. ....|.-....|. .-+.+.++|..++..|...... +....
T Consensus 9 ~~~i~~l~~~l-~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~----~~~~~ 83 (588)
T 1b3u_A 9 LYPIAVLIDEL-RNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTL----VGGPE 83 (588)
T ss_dssp SHHHHHHHHHT-TCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGG----GTSGG
T ss_pred cCcHHHHHHHh-hcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhc----cCcHH
Confidence 44567777776 67899999999888876433 2344654444443 2235668999999888743321 11111
Q ss_pred HHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhcccc-ccCCccchHHHHHhcCCCC-CcHHHHHHHHhhcccccc
Q 002041 80 VRGLQDSLNTLLKKFH-KGPPKVRTQISIAVAALAVHISAE-DWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEVF 156 (976)
Q Consensus 80 ~~~lr~~Ll~~l~~~~-~~~~~v~~kL~~~La~l~~~~~~~-~W~~~~~~~~l~~~l~~~~-~~~~~~L~~L~~l~EE~~ 156 (976)
....++..+.... .....||...+.+|..++...++. .|+. +++.+.+...+.. ........++..+.+...
T Consensus 84 ---~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~--l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~ 158 (588)
T 1b3u_A 84 ---YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH--FVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS 158 (588)
T ss_dssp ---GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHT--HHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC
T ss_pred ---HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHH--HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC
Confidence 1122344443322 346789999999999988755431 2333 4444444433221 122334444544433221
Q ss_pred cccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhh--hHHHHHHHHHHHHhhhccCCCCCcccccchhHHHHHhcCCCc-
Q 002041 157 NYKIAARPERRRQFEKELTSQMEVALSTLTACLHI--NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE- 233 (976)
Q Consensus 157 ~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~--~~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~~~~~L~~~- 233 (976)
.. ..+.++.++...+.+ +.++..+++++..+... .+.+ .....+++.+...++++
T Consensus 159 -------~~-----------~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~---~~~~-~~~~~l~~~l~~~~~d~~ 216 (588)
T 1b3u_A 159 -------SA-----------VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKV---LELD-NVKSEIIPMFSNLASDEQ 216 (588)
T ss_dssp -------HH-----------HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHT---SCHH-HHHHTHHHHHHHHHTCSC
T ss_pred -------HH-----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH---hcHH-hHHHHHHHHHHHHhcCCc
Confidence 11 123455555555554 46889999999988874 2222 11245777777777654
Q ss_pred -chHHHHHHHHHHHhhhhccCCCCCccCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHHHHhcCCc
Q 002041 234 -ILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSD 312 (976)
Q Consensus 234 -~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~v~~l~~~~~~~~~d~e~~~~~~~l~~~~~~~~~~~l~~~~~ 312 (976)
..+..|++++..+...... ......++|.+..+ . .+.+.......++.+..++.....-.
T Consensus 217 ~~vr~~a~~~l~~l~~~~~~---------~~~~~~~~~~l~~~---~--~d~~~~vR~~a~~~l~~l~~~~~~~~----- 277 (588)
T 1b3u_A 217 DSVRLLAVEACVNIAQLLPQ---------EDLEALVMPTLRQA---A--EDKSWRVRYMVADKFTELQKAVGPEI----- 277 (588)
T ss_dssp HHHHTTHHHHHHHHHHHSCH---------HHHHHHTHHHHHHH---H--TCSSHHHHHHHHHTHHHHHHHHCHHH-----
T ss_pred HHHHHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHH---c--cCCCHHHHHHHHHHHHHHHHHhCccc-----
Confidence 5678899999888764321 11222333333221 1 23344455566666666654321100
Q ss_pred hhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCC
Q 002041 313 ESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQ 392 (976)
Q Consensus 313 ~~~~ll~~lL~~~~~~~~~vs~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~ 392 (976)
....+++.++.++..++.++...+...+..+.+.+.. +. . ..+++..+++.+...+ .
T Consensus 278 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---------~~-------~----~~~~~~~l~p~l~~~l---~ 334 (588)
T 1b3u_A 278 TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA---------DC-------R----ENVIMSQILPCIKELV---S 334 (588)
T ss_dssp HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCT---------TT-------H----HHHHHHTHHHHHHHHH---T
T ss_pred chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCh---------hh-------h----hhHHHHHHHHHHHHHh---c
Confidence 1234677777777888888888888887777664421 00 0 0012222222222211 1
Q ss_pred CCCCCChhhhHHhHhhhhcccccCCccchhhhhhhhhhhHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhH
Q 002041 393 DYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEA 472 (976)
Q Consensus 393 d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea 472 (976)
| .+ ...|.. +...+..+...+|.+...+.+.+.+...+. +.++.-+++
T Consensus 335 d-~~---------~~vR~~-----------------a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~-----d~~~~Vr~~ 382 (588)
T 1b3u_A 335 D-AN---------QHVKSA-----------------LASVIMGLSPILGKDNTIEHLLPLFLAQLK-----DECPEVRLN 382 (588)
T ss_dssp C-SC---------HHHHHH-----------------HHTTGGGGHHHHCHHHHHHHTHHHHHHHHT-----CSCHHHHHH
T ss_pred C-CC---------HHHHHH-----------------HHHHHHHHHHHhhHhHHHHHHHHHHHHHhC-----CCchHHHHH
Confidence 1 00 134555 666666666777765455556666655542 345667788
Q ss_pred HHHHHHHhhcccCccc--ccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCCh-H
Q 002041 473 ALFCIRAISTYVSVVE--AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-D 549 (976)
Q Consensus 473 ~L~~l~~i~e~~~~~~--~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~-~ 549 (976)
++.+++.+.+.+..+. ...+|.+...+.. .+.++|.+++..+|.++..+.... +.+.+++.+.+.+.++. .
T Consensus 383 a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d--~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~ 456 (588)
T 1b3u_A 383 IISNLDCVNEVIGIRQLSQSLLPAIVELAED--AKWRVRLAIIEYMPLLAGQLGVEF----FDEKLNSLCMAWLVDHVYA 456 (588)
T ss_dssp HHTTCHHHHHHSCHHHHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHCGGG----CCHHHHHHHHHGGGCSSHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHcCHHH----HHHHHHHHHHHHhcCCcHH
Confidence 8888888877665332 2344555544322 378999999999999988765432 34567777777787763 5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHH
Q 002041 550 TAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVT 629 (976)
Q Consensus 550 v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~ 629 (976)
|+..|+.++..+++.++... +.+.++..+..+... -+...|...+++++.+...++.+ .+...++..++
T Consensus 457 Vr~~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~~~-----~~~~~R~~a~~~l~~l~~~~~~~---~~~~~~~~~l~- 525 (588)
T 1b3u_A 457 IREAATSNLKKLVEKFGKEW--AHATIIPKVLAMSGD-----PNYLHRMTTLFCINVLSEVCGQD---ITTKHMLPTVL- 525 (588)
T ss_dssp HHHHHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTTC-----SCHHHHHHHHHHHHHHHHHHHHH---HHHHHTHHHHH-
T ss_pred HHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhhC-----CCHHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHH-
Confidence 99999999999999876542 234444444444332 24677888999999888776543 23344444433
Q ss_pred HHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 002041 630 PLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKY 704 (976)
Q Consensus 630 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~v~e~~~~~~~~ 704 (976)
+.+.... ...-...+.+++.+...++ ++. ....+.|.+..+.. ..|.+|++.++.++..
T Consensus 526 ---~~l~d~~-------~~Vr~~a~~~l~~l~~~~~-~~~---~~~~~~p~l~~l~~--d~d~~vr~~a~~al~~ 584 (588)
T 1b3u_A 526 ---RMAGDPV-------ANVRFNVAKSLQKIGPILD-NST---LQSEVKPILEKLTQ--DQDVDVKYFAQEALTV 584 (588)
T ss_dssp ---HGGGCSC-------HHHHHHHHHHHHHHGGGSC-HHH---HHHHHHHHHHHHTT--CSSHHHHHHHHHHHHH
T ss_pred ---hhCCCCC-------chHHHHHHHHHHHHHHHhc-hhh---hHHHHHHHHHHHcC--CCchhHHHHHHHHHHH
Confidence 3333221 1111235677777776553 211 12567777777532 4578899998888764
No 20
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.12 E-value=8.4e-08 Score=114.21 Aligned_cols=493 Identities=12% Similarity=0.096 Sum_probs=277.6
Q ss_pred HHHHHHHHhhhh-hHHHHHHHHHHHHhhhccCCCCCcccccchhHHHHHhcCCC--cchHHHHHHHHHHHhhhhccCCCC
Q 002041 180 VALSTLTACLHI-NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHS--EILSEASVNVISELIHYSAAGSSG 256 (976)
Q Consensus 180 ~vl~~l~~~l~~-~~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~~~~~L~~--~~~~~~a~~~l~~ii~~~~~~~~~ 256 (976)
.++.++...... ++++..+.+++..+.... +... ....+++.+...+.+ +..+..|++++..+......
T Consensus 49 ~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~---~~~~-~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~---- 120 (588)
T 1b3u_A 49 ELLPFLTDTIYDEDEVLLALAEQLGTFTTLV---GGPE-YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSP---- 120 (588)
T ss_dssp THHHHHHHTCCCCHHHHHHHHHHHTTCSGGG---TSGG-GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH----
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHhcc---CcHH-HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCH----
Confidence 345555444432 367888888888666542 1111 124566666666654 46899999999999864321
Q ss_pred CccCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHHHHhcCCchhHHHHHHHHhhccCCCcchhhhh
Q 002041 257 GATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMT 336 (976)
Q Consensus 257 ~~~~~~~~i~~l~~~v~~l~~~~~~~~~d~e~~~~~~~l~~~~~~~~~~~l~~~~~~~~~ll~~lL~~~~~~~~~vs~~~ 336 (976)
..+...+.|.+.. +.. +++.......+.++..++..... .....+++.+..++..++..|...+
T Consensus 121 -----~~~~~~l~~~l~~----l~~-~~~~~~R~~a~~~l~~~~~~~~~------~~~~~l~~~l~~l~~d~~~~VR~~a 184 (588)
T 1b3u_A 121 -----SDLEAHFVPLVKR----LAG-GDWFTSRTSACGLFSVCYPRVSS------AVKAELRQYFRNLCSDDTPMVRRAA 184 (588)
T ss_dssp -----HHHHHTHHHHHHH----HHT-CSSHHHHHHHGGGHHHHTTTSCH------HHHHHHHHHHHHHHTCSCHHHHHHH
T ss_pred -----HHHHHHHHHHHHH----Hhc-CCCcHHHHHHHHHHHHHHHhcCH------HHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 1111222333221 111 22333333444444444332111 1234567777777788889999999
Q ss_pred HHHHHHHHHHhcccccccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhhcccccC
Q 002041 337 FNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCS 416 (976)
Q Consensus 337 l~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~ 416 (976)
...+..+.+.+.. +.....+.|.+.+++ .| ++ ...|..
T Consensus 185 ~~~l~~l~~~~~~-----------------~~~~~~l~~~l~~~~----------~d-----~~-----~~vr~~----- 222 (588)
T 1b3u_A 185 ASKLGEFAKVLEL-----------------DNVKSEIIPMFSNLA----------SD-----EQ-----DSVRLL----- 222 (588)
T ss_dssp HHHHHHHHHTSCH-----------------HHHHHTHHHHHHHHH----------TC-----SC-----HHHHTT-----
T ss_pred HHHHHHHHHHhcH-----------------HhHHHHHHHHHHHHh----------cC-----Cc-----HHHHHH-----
Confidence 9998887764321 111122233322222 11 01 135555
Q ss_pred CccchhhhhhhhhhhHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCccc--ccchHH
Q 002041 417 SSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE--AEVMPQ 494 (976)
Q Consensus 417 ~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~~--~~~l~~ 494 (976)
+...+..++..++++...+.+.+.+.+... +.+|+-+++++.+++.+++.+..+. ...++.
T Consensus 223 ------------a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~-----d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~ 285 (588)
T 1b3u_A 223 ------------AVEACVNIAQLLPQEDLEALVMPTLRQAAE-----DKSWRVRYMVADKFTELQKAVGPEITKTDLVPA 285 (588)
T ss_dssp ------------HHHHHHHHHHHSCHHHHHHHTHHHHHHHHT-----CSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHH
T ss_pred ------------HHHHHHHHHHhCCHHHHHHHHHHHHHHHcc-----CCCHHHHHHHHHHHHHHHHHhCcccchhHHHHH
Confidence 667777777777765555656666655431 5789999999999999998765432 234444
Q ss_pred HhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCCh-HHHHHHHHHHHHHHHHhhhhhhcCH
Q 002041 495 VMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYL 573 (976)
Q Consensus 495 l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~L~~~l 573 (976)
++..+. .+++.+|.+++..+|+++..+........+++.+++.+...+.++. .++..|+.++..++..++.... .
T Consensus 286 l~~~l~--d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~--~ 361 (588)
T 1b3u_A 286 FQNLMK--DCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNT--I 361 (588)
T ss_dssp HHHHHT--CSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHH--H
T ss_pred HHHHhC--CCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHH--H
Confidence 444443 2478999999999999987654320000145666666666666653 5999999999999987765432 2
Q ss_pred HHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhH
Q 002041 574 DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVH 653 (976)
Q Consensus 574 ~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~ 653 (976)
+.++..+...+.. -..+.|..++++++.++...+.+.. ...++.. +...+... ..+.....
T Consensus 362 ~~l~p~l~~~l~d-----~~~~Vr~~a~~~l~~l~~~~~~~~~---~~~~lp~----l~~~~~d~-------~~~vr~~~ 422 (588)
T 1b3u_A 362 EHLLPLFLAQLKD-----ECPEVRLNIISNLDCVNEVIGIRQL---SQSLLPA----IVELAEDA-------KWRVRLAI 422 (588)
T ss_dssp HHTHHHHHHHHTC-----SCHHHHHHHHTTCHHHHHHSCHHHH---HHHHHHH----HHHHHTCS-------SHHHHHHH
T ss_pred HHHHHHHHHHhCC-----CchHHHHHHHHHHHHHHHhcCHHHH---HHHHHHH----HHHHhcCC-------CchHHHHH
Confidence 3344444555542 2467889999999999988875432 1222222 22333221 11222234
Q ss_pred HHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCC
Q 002041 654 IDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQ 733 (976)
Q Consensus 654 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~ 733 (976)
++.++.+.+.++. +.. ...++|.+...+. ..+..|++.++.+++.+...+|+.. +.+.+++.+.... ..+.
T Consensus 423 ~~~l~~l~~~~~~-~~~---~~~l~~~l~~~l~--d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~-~~~~ 493 (588)
T 1b3u_A 423 IEYMPLLAGQLGV-EFF---DEKLNSLCMAWLV--DHVYAIREAATSNLKKLVEKFGKEW--AHATIIPKVLAMS-GDPN 493 (588)
T ss_dssp HHHHHHHHHHHCG-GGC---CHHHHHHHHHGGG--CSSHHHHHHHHHHHHHHHHHHCHHH--HHHHTHHHHHHTT-TCSC
T ss_pred HHHHHHHHHHcCH-HHH---HHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHh-hCCC
Confidence 5666666555432 111 1345666655443 2457899999999999888877642 1233333333222 1111
Q ss_pred ----ccHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhhhcCcccCCCCCccHHHHHHHHHHHHhhCC
Q 002041 734 ----PCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCP 800 (976)
Q Consensus 734 ----~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p 800 (976)
..++++++.+...+|.+ ..... +.......+. +.+|+++......+..+.+...
T Consensus 494 ~~~R~~a~~~l~~l~~~~~~~----~~~~~----~~~~l~~~l~-----d~~~~Vr~~a~~~l~~l~~~~~ 551 (588)
T 1b3u_A 494 YLHRMTTLFCINVLSEVCGQD----ITTKH----MLPTVLRMAG-----DPVANVRFNVAKSLQKIGPILD 551 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHH----THHHHHHGGG-----CSCHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHHHHHHhcCHH----HHHHH----HHHHHHhhCC-----CCCchHHHHHHHHHHHHHHHhc
Confidence 23456666666665532 11112 2222222232 4567888888888888876543
No 21
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.30 E-value=0.00029 Score=83.26 Aligned_cols=461 Identities=13% Similarity=0.103 Sum_probs=231.7
Q ss_pred hcCCCHHHHHHHHHHHHHHhc-ChhHHHHH-HHHhhc-CCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHH
Q 002041 15 YHHPDDAVRMQADRWLQDFQH-TIDAWQVA-DNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLL 91 (976)
Q Consensus 15 y~~~d~~~r~~A~~~L~~~q~-s~~aw~~~-~~lL~~-~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l 91 (976)
..++|...|+-+.-++..+-+ .|+.-.++ ..+..+ .+.++.+|-.|..++-+.. +++....+-..+...+
T Consensus 58 ~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-------~~~~~~~l~~~l~~~L 130 (591)
T 2vgl_B 58 MQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR-------VDKITEYLCEPLRKCL 130 (591)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC-------SGGGHHHHHHHHHHHS
T ss_pred hCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHHc
Confidence 355677777777777766544 45543332 333221 1356667777766665331 3344444444444444
Q ss_pred HHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CcHHHHHHHHhhcccccccc-cccCChhHHHH
Q 002041 92 KKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEVFNY-KIAARPERRRQ 169 (976)
Q Consensus 92 ~~~~~~~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l~~~~-~~~~~~L~~L~~l~EE~~~~-~~~~~~~~r~~ 169 (976)
. ..++.||++-+.++..++... ++.+++.++++.+.+.++... ......+..|..+.++-... ...+.
T Consensus 131 ~---d~~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~------ 200 (591)
T 2vgl_B 131 K---DEDPYVRKTAAVCVAKLHDIN-AQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLN------ 200 (591)
T ss_dssp S---CSCHHHHHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCH------
T ss_pred C---CCChHHHHHHHHHHHHHHhhC-hhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhcc------
Confidence 3 357899999999999988744 455653226677777776322 33455666666666653221 11110
Q ss_pred HHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhccCCCCCcccccchhHHHHHhcCCC--cchHHHHHHHHHHHh
Q 002041 170 FEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHS--EILSEASVNVISELI 247 (976)
Q Consensus 170 l~~~l~~~~~~vl~~l~~~l~~~~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~~~~~L~~--~~~~~~a~~~l~~ii 247 (976)
......++..+.. .++-.+..+++++..+. |.+.-....+++.+...|++ +.+...|+.++..+.
T Consensus 201 -----~~~~~~Ll~~l~~--~~~~~q~~il~~l~~l~------~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~ 267 (591)
T 2vgl_B 201 -----PQNINKLLTALNE--CTEWGQIFILDCLSNYN------PKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFL 267 (591)
T ss_dssp -----HHHHHHHHHHHHH--CCHHHHHHHHHHHHTSC------CCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSC
T ss_pred -----HHHHHHHHHcCCC--CCchHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 1112222222211 11223445555553222 11111124567777777764 456667777777665
Q ss_pred hhhccCCCCCccCchhHHHHHHHHHHh-hHHHhhhccCCHHHHHHHHHHHHHHhhHHHHHHhcCCchhHHHHHHHHhhcc
Q 002041 248 HYSAAGSSGGATVNMPLIQVIVPQIMS-LKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVAS 326 (976)
Q Consensus 248 ~~~~~~~~~~~~~~~~~i~~l~~~v~~-l~~~~~~~~~d~e~~~~~~~l~~~~~~~~~~~l~~~~~~~~~ll~~lL~~~~ 326 (976)
..... ..+.++.+.+.+.. +. .+. ..|.+......+.+..++..+ |+.+...+..+ .+..
T Consensus 268 ~~~~~--------~~~~~~~~~~~~~~~L~-~L~--~~d~~vr~~aL~~l~~i~~~~-------p~~~~~~~~~~-~~~~ 328 (591)
T 2vgl_B 268 ELLPK--------DSDYYNMLLKKLAPPLV-TLL--SGEPEVQYVALRNINLIVQKR-------PEILKQEIKVF-FVKY 328 (591)
T ss_dssp CSCCB--------TTBSHHHHHHHTHHHHH-HHT--TSCHHHHHHHHHHHHHHHHHC-------CSTTTTCTTTT-SCCT
T ss_pred hccCC--------CHHHHHHHHHHHHHHHH-HHh--cCCccHHHHHHHHHHHHHHhC-------hHHHHHHHHhh-eecc
Confidence 32100 01122222222111 11 121 234443333334444443332 22111111111 1222
Q ss_pred CCCcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhH
Q 002041 327 HPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFK 406 (976)
Q Consensus 327 ~~~~~vs~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~d~~~~~~d~~~~f~ 406 (976)
+.+..|...+++.++.+... . ....++.+ +...+ .+. | .
T Consensus 329 ~d~~~Ir~~al~~L~~l~~~-------------~-----------nv~~iv~~----L~~~l---~~~---d----~--- 367 (591)
T 2vgl_B 329 NDPIYVKLEKLDIMIRLASQ-------------A-----------NIAQVLAE----LKEYA---TEV---D----V--- 367 (591)
T ss_dssp TSCHHHHHHHHHHHHHTCCS-------------S-----------THHHHHHH----HHHHT---TSS---C----H---
T ss_pred CChHHHHHHHHHHHHHHCCh-------------h-----------hHHHHHHH----HHHHH---hcC---C----H---
Confidence 33366778888876654320 0 01122222 22222 110 1 1
Q ss_pred hhhhcccccCCccchhhhhhhhhhhHHHHHHhhcCh--hHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhccc
Q 002041 407 HTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGG--DATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYV 484 (976)
Q Consensus 407 ~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~--~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~ 484 (976)
+||+. +...+..++....+ +.+++.+.+.+.. ..+|-..|+ +.+++.+....
T Consensus 368 ~~r~~-----------------~v~aI~~la~~~~~~~~~~v~~Ll~ll~~--------~~~~v~~e~-i~~l~~ii~~~ 421 (591)
T 2vgl_B 368 DFVRK-----------------AVRAIGRCAIKVEQSAERCVSTLLDLIQT--------KVNYVVQEA-IVVIRDIFRKY 421 (591)
T ss_dssp HHHHH-----------------HHHHHHHHHTTCHHHHHHHHHHHHHHHHT--------CCHHHHHHH-HHHHHHHHHHS
T ss_pred HHHHH-----------------HHHHHHHHHHhChhHHHHHHHHHHHHHcc--------cchHHHHHH-HHHHHHHHHHC
Confidence 36666 55556555543321 3455555544432 345665565 55777776665
Q ss_pred CcccccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccC-CChHHHHHHHHHHHHHHH
Q 002041 485 SVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMS-TSEDTAAAAALAFRHICD 563 (976)
Q Consensus 485 ~~~~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~-~~~~v~~~A~~al~~l~~ 563 (976)
+......++.+.+.+.... +|.++.+++|++|.|++++.. .+.++..+...+. ++..++..+..|+.++..
T Consensus 422 p~~~~~~v~~L~~~l~~~~-~~~~~~~~~wilGey~~~~~~-------~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~ 493 (591)
T 2vgl_B 422 PNKYESIIATLCENLDSLD-EPDARAAMIWIVGEYAERIDN-------ADELLESFLEGFHDESTQVQLTLLTAIVKLFL 493 (591)
T ss_dssp CSSCCTTHHHHHHTTTTCC-SHHHHHHHHHHHHTTCTTCTT-------HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHcccccccC-------HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHh
Confidence 5544456677776665443 688899999999999987753 3456666655543 344599999999999987
Q ss_pred HhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHH
Q 002041 564 DCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSM 606 (976)
Q Consensus 564 ~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~ 606 (976)
.+.....+ .+...+...... ..+.+.|.+.++..+.
T Consensus 494 ~~p~~~~~---~i~~ll~~~~~d----~~d~evrdRA~~y~~l 529 (591)
T 2vgl_B 494 KKPSETQE---LVQQVLSLATQD----SDNPDLRDRGYIYWRL 529 (591)
T ss_dssp TCCSTTHH---HHHHHHHHHHTT----CCCHHHHHHHHHHHTT
T ss_pred cCchHHHH---HHHHHHHHhhhc----CCChHHHHHHHHHHHH
Confidence 65432212 222222222211 2456777777776653
No 22
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.17 E-value=4.7e-05 Score=87.17 Aligned_cols=267 Identities=12% Similarity=0.078 Sum_probs=156.1
Q ss_pred CcchhhHHHHHHHHhhcccCcc-cccchHHHhhhcc---CCC-CcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHH
Q 002041 466 EWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLP---KLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 540 (976)
Q Consensus 466 ~w~~~Ea~L~~l~~i~e~~~~~-~~~~l~~l~~~l~---~~~-~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l 540 (976)
++..+|+++.+++.+.+..... ...+++.+++.+. +-+ .++.||..++.+++.+..++..+.....+...+++.+
T Consensus 143 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l 222 (462)
T 1ibr_B 143 TEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVV 222 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 7889999999999998876322 2344555555442 112 2689999999999987665553321101112234555
Q ss_pred HcccCCC-hHHHHHHHHHHHHHHHHhhhhhhcCHH-HHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcC-------
Q 002041 541 TSGMSTS-EDTAAAAALAFRHICDDCRKKLCGYLD-GLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL------- 611 (976)
Q Consensus 541 ~~~l~~~-~~v~~~A~~al~~l~~~~~~~L~~~l~-~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~------- 611 (976)
...+.++ ..++..++.+|..+++.+...+.+|++ .++..+...+.. .+.+.+...++.++.+....
T Consensus 223 ~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~v~~~a~~~l~~~~~~~~~~~~~~ 297 (462)
T 1ibr_B 223 CEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS-----DIDEVALQGIEFWSNVCDEEMDLAIEA 297 (462)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHC-----SSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555443 258999999999999999888889988 888877766642 34667888888877776542
Q ss_pred ------------C-hHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCCcccHHHHHHHHh
Q 002041 612 ------------P-QVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLW 678 (976)
Q Consensus 612 ------------p-~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 678 (976)
+ .....+++..++. .+-+.+.......++........+.++++.+..... + .++..++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~l~p----~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~---~~~~~~~ 368 (462)
T 1ibr_B 298 SEAAEQGRPPEHTSKFYAKGALQYLVP----ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--D---DIVPHVL 368 (462)
T ss_dssp CCTTCSSSCSSCCCCCHHHHHHHHHHH----HHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--T---THHHHHH
T ss_pred ccccccCCCccchhHHHHHHHhhhccH----HHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--H---HHHHHHH
Confidence 0 0112233333333 333334332211111111111124455555555443 2 2334566
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHhhcCC----ccHHHHHHHHHHHhCC
Q 002041 679 PIFKAIFDIRAWDMRTMESLCRACKYAVRTSK-RFMGITIGAILEEIQGLYQQHQQ----PCFLYLSSEVIKIFGS 749 (976)
Q Consensus 679 ~~l~~ll~~~~~~~~v~e~~~~~~~~~~~~~~-~~~~~~l~~l~~~l~~~~~~~~~----~~~L~l~~~li~~~~~ 749 (976)
|.+...+. ..+..++++++.+++.+....+ ..+.++++.+++.+...+.. +. ....++++.+...++.
T Consensus 369 ~~l~~~l~--~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d-~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 369 PFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp HHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHhc--CCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhccc
Confidence 66666554 3467889999999987765443 23445555566655554432 22 2346667777776665
No 23
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.03 E-value=0.0054 Score=77.06 Aligned_cols=159 Identities=8% Similarity=0.019 Sum_probs=108.2
Q ss_pred CcchhhHHHHHHHHhhcccCcccccchHHHhhhcc-CC-CCcHHHHHHHHHHHHhcHHHHh---------hCCCCcchHH
Q 002041 466 EWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KL-PQQPQLLQTVCLTIGAYSKWFD---------AASSDPSILA 534 (976)
Q Consensus 466 ~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~-~~-~~~~~v~~t~~~~ig~y~~~~~---------~~p~~~~~l~ 534 (976)
+-.-+-+++++++.+++.+.. +.+..+++.+. .+ .+++.|+.+++.++.++++-.. .......+++
T Consensus 471 ~p~vr~~a~~~lg~~~~~~~~---~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~ 547 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQLTK---AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE 547 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGSCH---HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH
T ss_pred CceehHHHHHHHHHHHhhCCH---HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHH
Confidence 344577899999999998742 34555554432 22 2368999999999999876322 0000114788
Q ss_pred HHHHHHHcccCCC----hH--HHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHH
Q 002041 535 SVLSILTSGMSTS----ED--TAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVI 608 (976)
Q Consensus 535 ~~l~~l~~~l~~~----~~--v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi 608 (976)
++++.++..++.. .+ ....+..++..+++..++.+.||.+.++..+.+.+.......-+..-+..++|++|.++
T Consensus 548 ~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~ 627 (960)
T 1wa5_C 548 ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAIL 627 (960)
T ss_dssp HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 8998888777653 21 34688999999999999999999999998887766531111123345567999999999
Q ss_pred hcCChHHHHHHHHHhhhHH
Q 002041 609 TELPQVDAKKALEMLCLPV 627 (976)
Q Consensus 609 ~~~p~~~~~~~l~~ll~p~ 627 (976)
.+.+++....+.+.++.++
T Consensus 628 ~~~~~~~~~~~~~~~~p~~ 646 (960)
T 1wa5_C 628 NYTQRQNLPLLVDSMMPTF 646 (960)
T ss_dssp HTSCGGGHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHH
Confidence 9866666556655555443
No 24
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.98 E-value=0.022 Score=67.40 Aligned_cols=463 Identities=12% Similarity=0.073 Sum_probs=227.5
Q ss_pred CCCHHHHHHHHHHHHHHhc-ChhH-HHHHHHHhhc-CCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHH
Q 002041 17 HPDDAVRMQADRWLQDFQH-TIDA-WQVADNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKK 93 (976)
Q Consensus 17 ~~d~~~r~~A~~~L~~~q~-s~~a-w~~~~~lL~~-~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~~ 93 (976)
++|.+.|+-.--++..+-+ .++- -.++..+..+ .+.++.+|-.|+.+|-+.. +++....+-..+...+.+
T Consensus 81 s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~-------~~~~~~~l~~~l~~~L~~ 153 (618)
T 1w63_A 81 SQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG-------SSEMCRDLAGEVEKLLKT 153 (618)
T ss_dssp SSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHcC
Confidence 4566666666666665543 4442 2233333321 2356667777777776543 223333444444444443
Q ss_pred hcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC-CCcHHHHHHHHhhcccccccccccCChhHHHHHHH
Q 002041 94 FHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH-PEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEK 172 (976)
Q Consensus 94 ~~~~~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l~~~-~~~~~~~L~~L~~l~EE~~~~~~~~~~~~r~~l~~ 172 (976)
.+++||++-+.++..++...+ +.-++ +++.+.+.++.. +......+..|..+.+.- ++ ...
T Consensus 154 ---~~~~VRk~A~~al~~l~~~~p-~~v~~--~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~--------~~----~~~ 215 (618)
T 1w63_A 154 ---SNSYLRKKAALCAVHVIRKVP-ELMEM--FLPATKNLLNEKNHGVLHTSVVLLTEMCERS--------PD----MLA 215 (618)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHCG-GGGGG--GGGGTTTSTTCCCHHHHHHHHHHHHHHCCSH--------HH----HHH
T ss_pred ---CCHHHHHHHHHHHHHHHHHCh-HHHHH--HHHHHHHHhCCCCHhHHHHHHHHHHHHHHhC--------hH----HHH
Confidence 678999999999999887543 22222 455555555432 223344556665554320 11 122
Q ss_pred HHHHhHHHHHHHHHHhhh-------------hhHHHHHHHHHHHHhhhccCCCCCcccccchhHHHHHhcC---CC--cc
Q 002041 173 ELTSQMEVALSTLTACLH-------------INELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSL---HS--EI 234 (976)
Q Consensus 173 ~l~~~~~~vl~~l~~~l~-------------~~~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~~~~~L---~~--~~ 234 (976)
.+....|.++.+|..... ++-.+..+++++....... |...-...+++..+...+ .+ ..
T Consensus 216 ~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~---~~~~~~~~~~L~~l~~~~~~~~~~~~a 292 (618)
T 1w63_A 216 HFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND---DDSSEAMNDILAQVATNTETSKNVGNA 292 (618)
T ss_dssp HHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC---HHHHHTTHHHHHHHHHTSCCSSTHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHhccccccchHHH
Confidence 344556777777766532 2335566777777654421 110000112222222211 11 12
Q ss_pred hHHHHHHHHHHHhhhhccCCCCCccCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHHHHhcCCchh
Q 002041 235 LSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDES 314 (976)
Q Consensus 235 ~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~v~~l~~~~~~~~~d~e~~~~~~~l~~~~~~~~~~~l~~~~~~~ 314 (976)
+.-.|+.++..+ .. ...+.....+.+ ...+. +.|.+......+.+..++...+..+.
T Consensus 293 V~~ea~~~i~~l---~~---------~~~l~~~a~~~L---~~~L~--~~d~~vr~~aL~~L~~i~~~~p~~~~------ 349 (618)
T 1w63_A 293 ILYETVLTIMDI---KS---------ESGLRVLAINIL---GRFLL--NNDKNIRYVALTSLLKTVQTDHNAVQ------ 349 (618)
T ss_dssp HHHHHHHHHHHS---CC---------CHHHHHHHHHHH---HHHHT--CSSTTTHHHHHHHHHHHHHHHHHHHG------
T ss_pred HHHHHHHHHHhc---CC---------CHHHHHHHHHHH---HHHHh--CCCCchHHHHHHHHHHHHhhCHHHHH------
Confidence 233333433332 11 011222122221 11121 22333222333455555555554442
Q ss_pred HHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCC
Q 002041 315 MLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDY 394 (976)
Q Consensus 315 ~~ll~~lL~~~~~~~~~vs~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~d~ 394 (976)
.....++.|+..+|..|...+++-.+.+... + + ..+++.+++.-+-. .
T Consensus 350 -~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~------------~-n-----------v~~iv~eL~~~l~~-----~-- 397 (618)
T 1w63_A 350 -RHRSTIVDCLKDLDVSIKRRAMELSFALVNG------------N-N-----------IRGMMKELLYFLDS-----C-- 397 (618)
T ss_dssp -GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS------------S-S-----------THHHHHHHHHHHHH-----C--
T ss_pred -HHHHHHHHHccCCChhHHHHHHHHHHHHccc------------c-c-----------HHHHHHHHHHHHHh-----C--
Confidence 2455677888888999999998875444320 0 0 12233333322210 0
Q ss_pred CCCChhhhHHhHhhhhcccccCCccchhhhhhhhhhhHHHHHHhhcCh--hHHHHHHHHHHHHhHhhcCCCCCCcchhhH
Q 002041 395 QDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGG--DATLKILYIKFVEGVACCGNKHNEWRPAEA 472 (976)
Q Consensus 395 ~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~--~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea 472 (976)
| .+||.. +...+..++....+ .++++.+.+.+... .++-.-|
T Consensus 398 ---d-------~e~r~~-----------------~v~~I~~la~k~~~~~~~~v~~ll~lL~~~--------~~~v~~~- 441 (618)
T 1w63_A 398 ---E-------PEFKAD-----------------CASGIFLAAEKYAPSKRWHIDTIMRVLTTA--------GSYVRDD- 441 (618)
T ss_dssp ---C-------HHHHHH-----------------HHHHHHHHHHSSCCCHHHHHHHHHHHHHHT--------GGGSCSS-
T ss_pred ---C-------HHHHHH-----------------HHHHHHHHHHHhCccHHHHHHHHHHHHHhc--------cchhHHH-
Confidence 1 146666 66666666654432 35666666555432 1222223
Q ss_pred HHHHHHHhhcccCcccccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhC------CC--CcchHHHHHHHHHccc
Q 002041 473 ALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAA------SS--DPSILASVLSILTSGM 544 (976)
Q Consensus 473 ~L~~l~~i~e~~~~~~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~------p~--~~~~l~~~l~~l~~~l 544 (976)
.+..+..+....++-....+..++..+..-..+..+.+.++|++|.|+..+... |. .+..+..++..++...
T Consensus 442 ~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 521 (618)
T 1w63_A 442 AVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN 521 (618)
T ss_dssp HHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc
Confidence 333444444433332233566666666531123334457899999999988641 11 0113444444444333
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHH
Q 002041 545 STSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 607 (976)
Q Consensus 545 ~~~~~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~v 607 (976)
..+..++..+..|+.|+...+.. ..+.+...+..... ..+.+.|.+.++....+
T Consensus 522 ~~~~~vr~~~lta~~Kl~~~~~~----~~~~l~~~L~~~~~-----~~d~evrdRA~~y~~ll 575 (618)
T 1w63_A 522 MSTSVTRGYALTAIMKLSTRFTC----TVNRIKKVVSIYGS-----SIDVELQQRAVEYNALF 575 (618)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCSS----CHHHHHHHHHHHTT-----CSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCcc----hHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHH
Confidence 33444999999999999876532 23333344444332 24667788777766543
No 25
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.91 E-value=5.3e-05 Score=78.51 Aligned_cols=185 Identities=10% Similarity=0.160 Sum_probs=129.5
Q ss_pred CCCcchhhHHHHHHHH-hhcccCccc--ccchHHHhhhcc-CC--CCcHHHHHHHHHHHHhcHHHHhhCCCCc-chHHHH
Q 002041 464 HNEWRPAEAALFCIRA-ISTYVSVVE--AEVMPQVMALLP-KL--PQQPQLLQTVCLTIGAYSKWFDAASSDP-SILASV 536 (976)
Q Consensus 464 ~~~w~~~Ea~L~~l~~-i~e~~~~~~--~~~l~~l~~~l~-~~--~~~~~v~~t~~~~ig~y~~~~~~~p~~~-~~l~~~ 536 (976)
+.+|.++-+++-.+.. +.++++.-. ..-...++..|. .+ ..|+.++..++.++|.++.-+.. +... .|...+
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~-~~f~~~y~~~l 105 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT-PGFSKDYVSLV 105 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT-TTSCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-ccccHHHHHHH
Confidence 5789999999999999 887654322 222234454442 22 24899999999999999987751 2233 488889
Q ss_pred HHHHHcccCCCh-HHHHHHHHHHHHHHHHhhhhhh-cCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCCh-
Q 002041 537 LSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLC-GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ- 613 (976)
Q Consensus 537 l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~L~-~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~- 613 (976)
++.++..+.+.+ .|+.+|..|+..+|+.+..... ++++.+++.+...+.. + ....|...+..++.++...+.
T Consensus 106 lp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~----k-~~~vk~~al~~l~~~~~~~~~~ 180 (249)
T 2qk1_A 106 FTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKH----K-TPQIRMECTQLFNASMKEEKDG 180 (249)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTC----S-SHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcC----C-ChHHHHHHHHHHHHHHHHcCCc
Confidence 999998888763 4899999999999999865322 4499999988888754 2 467899999999999988764
Q ss_pred -HHHHHHH-HHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcC
Q 002041 614 -VDAKKAL-EMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN 665 (976)
Q Consensus 614 -~~~~~~l-~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 665 (976)
+...+++ ..++ ..+.+++.... ...|. .+.++++++.+.++
T Consensus 181 ~~~l~~~l~~~ii----p~l~~~l~D~~-----~~VR~--aA~~~l~~i~~~vG 223 (249)
T 2qk1_A 181 YSTLQRYLKDEVV----PIVIQIVNDTQ-----PAIRT--IGFESFAILIKIFG 223 (249)
T ss_dssp SHHHHHHHTTTHH----HHHHHHHTCSS-----HHHHH--HHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHH----HHHHHHhcCCC-----HHHHH--HHHHHHHHHHHHhC
Confidence 4444555 4444 44455554322 11232 36788888887765
No 26
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.76 E-value=0.00018 Score=74.36 Aligned_cols=178 Identities=11% Similarity=0.126 Sum_probs=121.5
Q ss_pred CCCcchhhHHHHHHHHhhcccCcccccchHHHhhhcc-CC--CCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHH
Q 002041 464 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KL--PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 540 (976)
Q Consensus 464 ~~~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~-~~--~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l 540 (976)
+.+|..+.+++..+..+.+..+.-......+++..+. .+ ..++.|+..++.++|.++.-+... ...+.+.+++.+
T Consensus 26 s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~--~~~~~~~ilp~l 103 (242)
T 2qk2_A 26 EKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR--FSNYASACVPSL 103 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGG--GHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHH
Confidence 5789999999999999987754322222345555443 22 248999999999999999876542 123788888888
Q ss_pred HcccCCCh-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChH-HHHH
Q 002041 541 TSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQV-DAKK 618 (976)
Q Consensus 541 ~~~l~~~~-~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~-~~~~ 618 (976)
+..+.+++ .++.+|+.++..+++.+ .++.++..+...+.. -....|..++..++.++...+++ ...+
T Consensus 104 l~~l~d~~~~vr~~a~~aL~~~~~~~------~~~~ll~~l~~~l~~-----~~~~vr~~~l~~l~~~l~~~~~~~~~~~ 172 (242)
T 2qk2_A 104 LEKFKEKKPNVVTALREAIDAIYAST------SLEAQQESIVESLSN-----KNPSVKSETALFIARALTRTQPTALNKK 172 (242)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHTTS------CHHHHHHHHHHHTTC-----SCHHHHHHHHHHHHHHHTTCCGGGCCHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHcC-----CChHHHHHHHHHHHHHHHHcCCCCccHH
Confidence 88888764 59999999999998754 256667666666643 25688999999999999887554 2346
Q ss_pred HHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcC
Q 002041 619 ALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN 665 (976)
Q Consensus 619 ~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 665 (976)
++..++..+. .++.... ...| ..+.++++.+...++
T Consensus 173 ~l~~l~p~l~----~~l~D~~-----~~VR--~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 173 LLKLLTTSLV----KTLNEPD-----PTVR--DSSAEALGTLIKLMG 208 (242)
T ss_dssp HHHHHHHHHH----HHHTSSC-----HHHH--HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH----HHhcCCC-----hHHH--HHHHHHHHHHHHHcC
Confidence 6665555554 4443221 1122 235667777666553
No 27
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.73 E-value=0.015 Score=73.20 Aligned_cols=300 Identities=11% Similarity=0.068 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCC-----Ch-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHH
Q 002041 507 QLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST-----SE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVY 580 (976)
Q Consensus 507 ~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~-----~~-~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~ 580 (976)
..|+.+..++...+.-+. + ..++.+++++.+.+.. ++ +.+.+|..++..+++.|.....++++.+++.+
T Consensus 436 ~~R~~~~~~l~~~~~~~~---~--~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l 510 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLN---D--YILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVL 510 (971)
T ss_dssp HHHHHHHHHHHHHHTTCT---T--HHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh---H--HHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHH
Confidence 356666666655443222 1 2677777776555432 11 37889999999999988877778888888855
Q ss_pred HHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHH
Q 002041 581 RTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYI 660 (976)
Q Consensus 581 ~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 660 (976)
..+... ......|...+.++|.....+... .+++..++..++..+ + .. .... +...+..+
T Consensus 511 ~~l~~~----d~~~~vr~~a~~~l~~~~~~l~~~--~~~l~~vl~~l~~~l----~-~~------v~~~---A~~al~~l 570 (971)
T 2x1g_F 511 AEIPYE----KLNVKLLGTALETMGSYCNWLMEN--PAYIPPAINLLVRGL----N-SS------MSAQ---ATLGLKEL 570 (971)
T ss_dssp HHSCTT----TSCHHHHHHHHHHHHHTHHHHC------CHHHHHHHHHHHH----H-SS------CHHH---HHHHHHHH
T ss_pred HhcCcc----ccCHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHh----C-hH------HHHH---HHHHHHHH
Confidence 443211 123556777888888776655422 144544444444443 2 11 1122 33344444
Q ss_pred hhhcCCcccHHHHHHHHhHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh-----hhhhhhhHHHHHHHHHHHHhhcC---
Q 002041 661 FRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTS-----KRFMGITIGAILEEIQGLYQQHQ--- 732 (976)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~v~e~~~~~~~~~~~~~-----~~~~~~~l~~l~~~l~~~~~~~~--- 732 (976)
.+..+ ..+.+++..++..+..++.....+.+..+.+.+++..++... ++++..+++++++.+.+..+...
T Consensus 571 ~~~~~--~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~ 648 (971)
T 2x1g_F 571 CRDCQ--LQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTP 648 (971)
T ss_dssp HHHCH--HHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CH
T ss_pred HHHHH--HhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 44432 345566677777777777664345667778888888777654 33444455555554443332211
Q ss_pred -----CccHHHHHHHHHHHhCCCC--cc-----hHHHHHHHHHHHHHHHhhhcCcccCCCCCccHHHHHHHHHHHHhhCC
Q 002041 733 -----QPCFLYLSSEVIKIFGSDP--SC-----ASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCP 800 (976)
Q Consensus 733 -----~~~~L~l~~~li~~~~~~~--~~-----~~~l~~~~~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p 800 (976)
...++.+++.++..++..- .. .+.+...+..+......++. ....++++++..+.++.+++....
T Consensus 649 ~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~---~~~~~~~v~e~~~~~~~~~~~~~~ 725 (971)
T 2x1g_F 649 AARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAE---MWVEEIDVLEAACSAMKHAITNLR 725 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHH---HTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHhhh
Confidence 1235677777777766420 00 01111222222222222232 133467899999999999887554
Q ss_pred CcccCcCChHHHHHHHHHhcccCCchhHHHHHHHHHHhhcc
Q 002041 801 QLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDL 841 (976)
Q Consensus 801 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~l~~~ 841 (976)
..+ .++++.+++..+.++...+ . ..++.++..++..
T Consensus 726 ~~~--~p~l~~~~~~l~~~~~~~~-~--~~~l~l~~~~i~~ 761 (971)
T 2x1g_F 726 SSF--QPMLQDLCLFIVASFQTRC-C--APTLEISKTAIVM 761 (971)
T ss_dssp C----CTHHHHHHHHHHHHCC--C-C--HHHHHHHHHHHTT
T ss_pred hhc--cccHHHHHHHHHHHHhcCC-c--hHHHHHHHHHHHH
Confidence 444 3468888888777766532 2 3467777777764
No 28
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.44 E-value=0.24 Score=58.40 Aligned_cols=229 Identities=9% Similarity=0.058 Sum_probs=126.7
Q ss_pred CCcchhhHHHHHHHHhhcccCcccccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHccc
Q 002041 465 NEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGM 544 (976)
Q Consensus 465 ~~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l 544 (976)
.+-..+-.|+.+++.++.. +-....++.+...+.. .+|.||++++.++++... .+|+ .++.+++.+...+
T Consensus 119 ~n~~vr~lAL~~L~~i~~~--~~~~~l~~~l~~~L~~--~~~~VRk~A~~al~~l~~---~~p~---~v~~~~~~l~~lL 188 (618)
T 1w63_A 119 STQFVQGLALCTLGCMGSS--EMCRDLAGEVEKLLKT--SNSYLRKKAALCAVHVIR---KVPE---LMEMFLPATKNLL 188 (618)
T ss_dssp SSSHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHS--CCHHHHHHHHHHHHHHHH---HCGG---GGGGGGGGTTTST
T ss_pred CCHhHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHH---HChH---HHHHHHHHHHHHh
Confidence 3444566788888888731 0011223444444432 489999999999998875 3565 5666666677777
Q ss_pred CCCh-HHHHHHHHHHHHHHHHhh---hhhhcCHHHHHHHHHHHhhccCCC------CCCHHhHHHHHHHHHHHHhcCChH
Q 002041 545 STSE-DTAAAAALAFRHICDDCR---KKLCGYLDGLYNVYRTAVNGEGSL------KVSAEDSLHLVEALSMVITELPQV 614 (976)
Q Consensus 545 ~~~~-~v~~~A~~al~~l~~~~~---~~L~~~l~~ll~~~~~~~~~~~~~------~l~~~~~~~l~eai~~vi~~~p~~ 614 (976)
.++. .|+..|..+|..+++... ..+.+.++.+++.+.++...+... ..++.-+..+++.++.+...-|.
T Consensus 189 ~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~- 267 (618)
T 1w63_A 189 NEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD- 267 (618)
T ss_dssp TCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH-
T ss_pred CCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH-
Confidence 7653 599999999999986533 245577888888887765421100 12466788899998877654321
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcCCHHH
Q 002041 615 DAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRT 694 (976)
Q Consensus 615 ~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~v 694 (976)
... .+.+-+.+++..... ..........+++.+++.. .. .+ .....+.+.+..++.. .+..+
T Consensus 268 -~~~-------~~~~~L~~l~~~~~~----~~~~~~aV~~ea~~~i~~l-~~-~~--~l~~~a~~~L~~~L~~--~d~~v 329 (618)
T 1w63_A 268 -SSE-------AMNDILAQVATNTET----SKNVGNAILYETVLTIMDI-KS-ES--GLRVLAINILGRFLLN--NDKNI 329 (618)
T ss_dssp -HHH-------TTHHHHHHHHHTSCC----SSTHHHHHHHHHHHHHHHS-CC-CH--HHHHHHHHHHHHHHTC--SSTTT
T ss_pred -HHH-------HHHHHHHHHHhcccc----ccchHHHHHHHHHHHHHhc-CC-CH--HHHHHHHHHHHHHHhC--CCCch
Confidence 111 111122223321110 0111122334555555442 22 11 2223344455554432 45567
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 002041 695 MESLCRACKYAVRTSKRFMGITIGAILE 722 (976)
Q Consensus 695 ~e~~~~~~~~~~~~~~~~~~~~l~~l~~ 722 (976)
...+...+..+...-...+.++.+.++.
T Consensus 330 r~~aL~~L~~i~~~~p~~~~~~~~~i~~ 357 (618)
T 1w63_A 330 RYVALTSLLKTVQTDHNAVQRHRSTIVD 357 (618)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 7777777776665544445555554443
No 29
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.0037 Score=64.45 Aligned_cols=165 Identities=14% Similarity=0.146 Sum_probs=121.3
Q ss_pred CCCcchhhHHHHHHHHhhcccC-cccc-cchHHHhhhcc-CCC-CcHHHHHHHHHHHHhcHHHHhhCCCCc-chHHHHHH
Q 002041 464 HNEWRPAEAALFCIRAISTYVS-VVEA-EVMPQVMALLP-KLP-QQPQLLQTVCLTIGAYSKWFDAASSDP-SILASVLS 538 (976)
Q Consensus 464 ~~~w~~~Ea~L~~l~~i~e~~~-~~~~-~~l~~l~~~l~-~~~-~~~~v~~t~~~~ig~y~~~~~~~p~~~-~~l~~~l~ 538 (976)
..+..-+++++.+++.+++.+. ..-. .+...++..+. .+. ..+.|+..+..++-.+.+... |... .+++.++.
T Consensus 72 D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~--~~~~~~~l~~ll~ 149 (249)
T 2qk1_A 72 DANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYD--PLASSGRNEDMLK 149 (249)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSC--TTCTTCTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcc--ccccCCcHHHHHH
Confidence 3456668999999999999887 5545 55555554432 232 257888888887777766442 2111 14788888
Q ss_pred HHHcccCCCh-HHHHHHHHHHHHHHHHhh---hhhhcCH-HHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCCh
Q 002041 539 ILTSGMSTSE-DTAAAAALAFRHICDDCR---KKLCGYL-DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ 613 (976)
Q Consensus 539 ~l~~~l~~~~-~v~~~A~~al~~l~~~~~---~~L~~~l-~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~ 613 (976)
.++.++.++. .++..+...+.++++..+ ..+.+++ +.++..+.+.+.. -..+.|...+++++.+...++.
T Consensus 150 ~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D-----~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 150 DILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVND-----TQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTC-----SSHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHhCH
Confidence 8888887753 499999999999999887 4677899 8999999888853 3578999999999999999998
Q ss_pred HHHHHHHHHhhhHHHHHHHHHH
Q 002041 614 VDAKKALEMLCLPVVTPLQEII 635 (976)
Q Consensus 614 ~~~~~~l~~ll~p~~~~l~~~~ 635 (976)
+...+++..+-..=...++..+
T Consensus 225 ~~~~p~l~~Ld~~k~~ki~~~~ 246 (249)
T 2qk1_A 225 NTFVKTLEHLDNLKRKKIEETV 246 (249)
T ss_dssp GGGHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHH
Confidence 7777888776555555555544
No 30
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.32 E-value=0.0088 Score=61.43 Aligned_cols=187 Identities=11% Similarity=0.023 Sum_probs=128.5
Q ss_pred cHHHHHHHHHHHHhcHHHHhhCCCC-cchHHHHHHHHHcccC-CCh-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHH
Q 002041 505 QPQLLQTVCLTIGAYSKWFDAASSD-PSILASVLSILTSGMS-TSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYR 581 (976)
Q Consensus 505 ~~~v~~t~~~~ig~y~~~~~~~p~~-~~~l~~~l~~l~~~l~-~~~-~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~ 581 (976)
....|+.++..++...+- +|.. ...+..+++.+...+. +++ .|+..|+.++..++...+..+.+|++.++..+.
T Consensus 28 ~w~~R~~a~~~L~~l~~~---~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll 104 (242)
T 2qk2_A 28 KWTLRKESLEVLEKLLTD---HPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLL 104 (242)
T ss_dssp SHHHHHHHHHHHHHHHHH---CSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcc---CCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 678999999988877543 2221 0134677777777774 543 589999999999999999989999999998888
Q ss_pred HHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHh
Q 002041 582 TAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIF 661 (976)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 661 (976)
..+.. -....|....+++..++...+. ..++.. +...+.... .+.-...++.++.++
T Consensus 105 ~~l~d-----~~~~vr~~a~~aL~~~~~~~~~-------~~ll~~----l~~~l~~~~-------~~vr~~~l~~l~~~l 161 (242)
T 2qk2_A 105 EKFKE-----KKPNVVTALREAIDAIYASTSL-------EAQQES----IVESLSNKN-------PSVKSETALFIARAL 161 (242)
T ss_dssp HGGGC-----CCHHHHHHHHHHHHHHHTTSCH-------HHHHHH----HHHHTTCSC-------HHHHHHHHHHHHHHH
T ss_pred HHHcC-----CCHHHHHHHHHHHHHHHHcCCH-------HHHHHH----HHHHHcCCC-------hHHHHHHHHHHHHHH
Confidence 87753 2467888899999888887652 223333 333333221 122223566677665
Q ss_pred hhcCCcc-cHHHHHHHHhHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhhh-hhhhHHHH
Q 002041 662 RYVNHPE-AVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRF-MGITIGAI 720 (976)
Q Consensus 662 ~~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~~~v~e~~~~~~~~~~~~~~~~-~~~~l~~l 720 (976)
...+ |+ .....+..++|.+..++. ..+.+|++++..++..+....|.. +.++++.+
T Consensus 162 ~~~~-~~~~~~~~l~~l~p~l~~~l~--D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L 219 (242)
T 2qk2_A 162 TRTQ-PTALNKKLLKLLTTSLVKTLN--EPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219 (242)
T ss_dssp TTCC-GGGCCHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTS
T ss_pred HHcC-CCCccHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 5432 32 344566788888888774 356789999999999988888765 56666554
No 31
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.18 E-value=0.64 Score=54.67 Aligned_cols=129 Identities=10% Similarity=0.099 Sum_probs=72.3
Q ss_pred cCCCHHHHHHHHHHHHHHhcC-hhHHHHHHHHhhc--CCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHH
Q 002041 16 HHPDDAVRMQADRWLQDFQHT-IDAWQVADNLLHD--ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLK 92 (976)
Q Consensus 16 ~~~d~~~r~~A~~~L~~~q~s-~~aw~~~~~lL~~--~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~ 92 (976)
.++|...|+-+--++..+-+. ++--.++..-+.. .+.++.+|-.|..++-+.. .++..+.+-..+.+.+.
T Consensus 84 ~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~-------~~e~~~~l~~~v~~~l~ 156 (621)
T 2vgl_A 84 SSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVG-------SREMAEAFAGEIPKILV 156 (621)
T ss_dssp GCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC-------CHHHHHHHTTHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC-------CHHHHHHHHHHHHHHHh
Confidence 556777777777777765443 5543333333221 1356667777777776542 23333444444444442
Q ss_pred HhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC-CCcHHHHHHHHhhccc
Q 002041 93 KFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH-PEFVPGFLELLTVLPE 153 (976)
Q Consensus 93 ~~~~~~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l~~~-~~~~~~~L~~L~~l~E 153 (976)
+ ...+++||++-+.++..++...+ +.-+..++++.+.+.++.. +......+..+..+.+
T Consensus 157 ~-~d~~~~VRK~A~~al~kl~~~~p-~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 157 A-GDTMDSVKQSAALCLLRLYRTSP-DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp C-SSSCHHHHHHHHHHHHHHHHHCG-GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred C-CCCCHHHHHHHHHHHHHHHHhCh-hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHH
Confidence 1 23578999999999999887543 3334112677777777532 2223344555544433
No 32
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.10 E-value=0.022 Score=71.68 Aligned_cols=297 Identities=9% Similarity=0.087 Sum_probs=161.9
Q ss_pred HHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHccc----CCCh-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHH
Q 002041 508 LLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGM----STSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRT 582 (976)
Q Consensus 508 v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l----~~~~-~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~ 582 (976)
.|..+..++...+.-+.. ..++.+++++.+.+ +.+. +.+.+|..++..+++.|.....++++.++..+..
T Consensus 423 ~r~~~~~~L~~~~~~~~~-----~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~ 497 (963)
T 2x19_B 423 YRVDISDTLMYVYEMLGA-----ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR 497 (963)
T ss_dssp HHHHHHHHHHHHHHHHTH-----HHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHccH-----HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh
Confidence 355666666655544332 15666677665555 3332 4788899999999998877666777777764332
Q ss_pred HhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhh
Q 002041 583 AVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFR 662 (976)
Q Consensus 583 ~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 662 (976)
+.. -....+...+..+|....-+... . .++.+++..+-+.+.. + ..+ ..+...+..+.+
T Consensus 498 l~~------~~~~vr~~~~~~l~~~~~~l~~~--~----~~l~~vl~~l~~~l~~--~-----~V~--~~A~~al~~l~~ 556 (963)
T 2x19_B 498 ISI------SNVQLADTVMFTIGALSEWLADH--P----VMINSVLPLVLHALGN--P-----ELS--VSSVSTLKKICR 556 (963)
T ss_dssp SCC------CSHHHHHHHHHHHHHTHHHHHHC--H----HHHTTTHHHHHHHTTC--G-----GGH--HHHHHHHHHHHH
T ss_pred CCC------CcHHHHHHHHHHHHHHHHHHHhC--H----HHHHHHHHHHHHHhCC--c-----hHH--HHHHHHHHHHHH
Confidence 211 12334555566665544332211 1 3455555555554432 1 111 123344444444
Q ss_pred hcCCcccHHHHHHHHhHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHhh---cC------
Q 002041 663 YVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSK-RFMGITIGAILEEIQGLYQQ---HQ------ 732 (976)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~v~e~~~~~~~~~~~~~~-~~~~~~l~~l~~~l~~~~~~---~~------ 732 (976)
..+ ..+.+++..+++.+..++.....+.+..+.+.+++..++...+ ....+++..+++.+...+.. .+
T Consensus 557 ~~~--~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 634 (963)
T 2x19_B 557 ECK--YDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNK 634 (963)
T ss_dssp HTG--GGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHH
T ss_pred HHH--HHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 332 2233455666666666666533355677888888888776554 45556555555544443332 11
Q ss_pred --CccHHHHHHHHHHHhCCCCc----------------chHHHHHHHHHHHHHHHhhhcCcccCCCCCccHHHHHHHHHH
Q 002041 733 --QPCFLYLSSEVIKIFGSDPS----------------CASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASR 794 (976)
Q Consensus 733 --~~~~L~l~~~li~~~~~~~~----------------~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~ 794 (976)
....+.+++.++..++.... ....+...+..+......+++. ..+++++.+..+.++.+
T Consensus 635 ~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~v~e~~~~~l~~ 711 (963)
T 2x19_B 635 LAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSK---WLNDAQVVEAVCAIFEK 711 (963)
T ss_dssp HHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHh---ccCchHHHHHHHHHHHH
Confidence 12356777888887774211 1122333444444433344432 23567899999999999
Q ss_pred HHhhCCCcccCcCChHHHHHHHHHhcccCCchhHHHHHHHHHHhhc
Q 002041 795 CIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFD 840 (976)
Q Consensus 795 ~~~~~p~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~l~~ 840 (976)
++...+..+. ++++.++...+...... +. -..+.++..++.
T Consensus 712 ~~~~~~~~~~--~~l~~~~~~l~~~~~~~-~~--~~~l~l~~~li~ 752 (963)
T 2x19_B 712 SVKTLLDDFA--PMVPQLCEMLGRMYSTI-PQ--ASALDLTRQLVH 752 (963)
T ss_dssp HHHHSSSTTG--GGHHHHHHHHHHHHHHS-CC--HHHHHHHHHHHH
T ss_pred HHHhhccccc--ccHHHHHHHHHHHHHcC-Cc--cHHHHHHHHHHH
Confidence 9887766553 35667776655544331 11 234555555554
No 33
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.06 E-value=0.048 Score=68.00 Aligned_cols=317 Identities=11% Similarity=0.107 Sum_probs=170.9
Q ss_pred CcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCC-----Ch-HHHHHHHHHHHHHHHHhhhhhhcCHHHHH
Q 002041 504 QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST-----SE-DTAAAAALAFRHICDDCRKKLCGYLDGLY 577 (976)
Q Consensus 504 ~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~-----~~-~v~~~A~~al~~l~~~~~~~L~~~l~~ll 577 (976)
.+...+.++++.+|..++=..... ...+++.+++++++...+ ++ .++..+++.+.++++=.+.+ ..++++++
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~-e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~-~~~L~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDT-EKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHH-HHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchh-HHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc-HHHHHHHH
Confidence 368999999999999876332110 013788888888765542 22 35667778898888865443 23566677
Q ss_pred HHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHH---HHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHH
Q 002041 578 NVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAK---KALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHI 654 (976)
Q Consensus 578 ~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~---~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l 654 (976)
+.+...+.. -....+.....++..+.......-.. .....++.++++.+.++.... .........
T Consensus 543 ~~L~~~l~~-----~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l-------~~~~~~~ly 610 (1023)
T 4hat_C 543 LKLFEFMHE-----THEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADL-------QPQQVHTFY 610 (1023)
T ss_dssp HHHHHHTTC-----SCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTS-------CHHHHHHHH
T ss_pred HHHHHHhhc-----CCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhC-------CHHHHHHHH
Confidence 666665521 11335555666666655542211000 000124455556666666532 123345577
Q ss_pred HHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhc----------CCHHHHH---HHHHHHHHHHHHhhhhhhhhHHHHH
Q 002041 655 DRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRA----------WDMRTME---SLCRACKYAVRTSKRFMGITIGAIL 721 (976)
Q Consensus 655 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----------~~~~v~e---~~~~~~~~~~~~~~~~~~~~l~~l~ 721 (976)
+.++.+++...........++.+++.+........ .|++... .++++...+..++|+.+.|++.++.
T Consensus 611 eai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~ 690 (1023)
T 4hat_C 611 KACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIY 690 (1023)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred HHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 89999998764322244455555554443332211 1333333 3555555666778888888887777
Q ss_pred HHHHHHHhhcC----------------Ccc----------HHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhhhcCc
Q 002041 722 EEIQGLYQQHQ----------------QPC----------FLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSI 775 (976)
Q Consensus 722 ~~l~~~~~~~~----------------~~~----------~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~ 775 (976)
..+.+.|+... .+. .|.++...+. +.++......+++.+++..++.-..
T Consensus 691 ~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~---~~~~~~~~~~~~~~~l~~~vl~dY~-- 765 (1023)
T 4hat_C 691 YNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYIS---KARNLDDVVKVLVEPLLNAVLEDYM-- 765 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHH---HCSCHHHHHHHTHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHhHHHHHHHHHHHHH--
Confidence 76665554310 000 1112122221 1222222333344444444443222
Q ss_pred ccCCCCCccH-HHHHHHHHHHHhhCCCcccC--cCChHHHHHHHHHhcc---cCCchhHHHHHHHHHHhhccc
Q 002041 776 EEFTSRPDVA-DDCFLLASRCIRYCPQLFIP--SSVFPSLVDCSMIGIT---VQHREASNSILTFLSDIFDLA 842 (976)
Q Consensus 776 ~~~~~~pD~~-~~~f~l~~~~~~~~p~~~~~--~~~l~~~~~~~~~~l~---~~~~~~~~~~~~fl~~l~~~~ 842 (976)
+..|+.+ .+++.+++.++++....+.+ ...++.++.+.+.=++ ..+|+....-++++..+...+
T Consensus 766 ---~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~ 835 (1023)
T 4hat_C 766 ---NNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKS 835 (1023)
T ss_dssp ---HSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHC
T ss_pred ---hCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHC
Confidence 3345543 45778888888876554433 2346666666544333 367777778888888776543
No 34
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.01 E-value=0.14 Score=60.23 Aligned_cols=209 Identities=12% Similarity=0.129 Sum_probs=112.1
Q ss_pred CCcchhhHHHHHHHHhhcccCcc-cccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchHH--HHHHHHH
Q 002041 465 NEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILA--SVLSILT 541 (976)
Q Consensus 465 ~~w~~~Ea~L~~l~~i~e~~~~~-~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~--~~l~~l~ 541 (976)
.+..-+..++.+++.++ ..+ ....++.+...+. ..+|.||++++..+++... .+|+ .++ .+++.+.
T Consensus 98 ~n~~ir~~AL~~L~~i~---~~~~~~~l~~~l~~~L~--d~~~~VRk~A~~al~~i~~---~~p~---~~~~~~~~~~l~ 166 (591)
T 2vgl_B 98 PNPLIRALAVRTMGCIR---VDKITEYLCEPLRKCLK--DEDPYVRKTAAVCVAKLHD---INAQ---MVEDQGFLDSLR 166 (591)
T ss_dssp SSHHHHHHHHHHHHTCC---SGGGHHHHHHHHHHHSS--CSCHHHHHHHHHHHHHHHH---SSCC---CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHcC--CCChHHHHHHHHHHHHHHh---hChh---hcccccHHHHHH
Confidence 44555667777777665 211 1123344444443 2489999999999998765 5576 555 4778888
Q ss_pred cccCCCh-HHHHHHHHHHHHHHHHhhhh-hhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHH
Q 002041 542 SGMSTSE-DTAAAAALAFRHICDDCRKK-LCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKA 619 (976)
Q Consensus 542 ~~l~~~~-~v~~~A~~al~~l~~~~~~~-L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~ 619 (976)
..+.+++ .|+..|..+|.++|....+. ........+..+.+.+.. .++..+..+++.++.+... ++++.
T Consensus 167 ~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~-----~~~~~q~~il~~l~~l~~~-~~~~~--- 237 (591)
T 2vgl_B 167 DLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNE-----CTEWGQIFILDCLSNYNPK-DDREA--- 237 (591)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHTSCCC-SHHHH---
T ss_pred HHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCC-----CCchHHHHHHHHHHHhCCC-ChHHH---
Confidence 8887754 59999999999998764432 233334434333333322 3466778888876543311 11121
Q ss_pred HHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhc-CCcccHHHHHHHHhHHHHHHHHhhcCCHHHHHHH
Q 002041 620 LEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYV-NHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESL 698 (976)
Q Consensus 620 l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~ll~~~~~~~~v~e~~ 698 (976)
..++.++ ...++.. .......++.++..+.... ..++....+...+.+.+..++ ..+..+.-.+
T Consensus 238 -~~~l~~l----~~~l~~~-------~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~---~~d~~vr~~a 302 (591)
T 2vgl_B 238 -QSICERV----TPRLSHA-------NSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL---SGEPEVQYVA 302 (591)
T ss_dssp -HHHHHHH----TTCSCSS-------TTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT---TSCHHHHHHH
T ss_pred -HHHHHHH----HHHHcCC-------ChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh---cCCccHHHHH
Confidence 1222222 1222211 1111222333343333222 123334444455555554443 2567777777
Q ss_pred HHHHHHHHHH
Q 002041 699 CRACKYAVRT 708 (976)
Q Consensus 699 ~~~~~~~~~~ 708 (976)
++.+..+...
T Consensus 303 L~~l~~i~~~ 312 (591)
T 2vgl_B 303 LRNINLIVQK 312 (591)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777766654
No 35
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.99 E-value=0.08 Score=61.35 Aligned_cols=331 Identities=13% Similarity=0.122 Sum_probs=173.9
Q ss_pred hHHHHHHHHHHHHhhhccCCCCCcccccchhHHHHHhcCCCc---chHHHHHHHHHHHhhhhccCCCCCccCchhHH-H-
Q 002041 192 NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE---ILSEASVNVISELIHYSAAGSSGGATVNMPLI-Q- 266 (976)
Q Consensus 192 ~~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~~~~~L~~~---~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i-~- 266 (976)
++++..++.++...+.....-+...+.....++.++..|.++ ++...|+.+|..+..... +....+ .
T Consensus 101 ~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~--------~~~~~~~~~ 172 (530)
T 1wa5_B 101 MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS--------AQTKVVVDA 172 (530)
T ss_dssp HHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH--------HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH--------HHHHHHHHC
Confidence 357777888888776532111112234567888888888754 578889999999886331 111111 1
Q ss_pred HHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhH---HHHHHhcCCchhHHHHHHHHhhccCCCcchhhhhHHHHHHH
Q 002041 267 VIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDS---YVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSL 343 (976)
Q Consensus 267 ~l~~~v~~l~~~~~~~~~d~e~~~~~~~l~~~~~~~---~~~~l~~~~~~~~~ll~~lL~~~~~~~~~vs~~~l~fW~~l 343 (976)
..++.+..+ +. +.+.+.....+..+..++.. ....+... ..++.++.++..++.++...++.....+
T Consensus 173 g~i~~Lv~l---L~--~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~-----~~l~~L~~ll~~~~~~v~~~a~~~L~~L 242 (530)
T 1wa5_B 173 DAVPLFIQL---LY--TGSVEVKEQAIWALGNVAGDSTDYRDYVLQC-----NAMEPILGLFNSNKPSLIRTATWTLSNL 242 (530)
T ss_dssp TCHHHHHHH---HH--HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-----TCHHHHHHGGGSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH---Hc--CCCHHHHHHHHHHHHHHhCCCccchHHHHHc-----CcHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 112222222 22 23555556666666666542 22222211 2466667777667777777666665554
Q ss_pred HHHhcccccccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhhcccccCCccchhh
Q 002041 344 QVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTES 423 (976)
Q Consensus 344 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~ 423 (976)
...-. +... ......+++.++..+..+ +. +.|..
T Consensus 243 ~~~~~---------~~~~------------~~~~~~~l~~L~~lL~~~------d~-------~v~~~------------ 276 (530)
T 1wa5_B 243 CRGKK---------PQPD------------WSVVSQALPTLAKLIYSM------DT-------ETLVD------------ 276 (530)
T ss_dssp HCCSS---------SCCC------------HHHHGGGHHHHHHHTTCC------CH-------HHHHH------------
T ss_pred hCCCC---------CCCc------------HHHHHhHHHHHHHHHcCC------CH-------HHHHH------------
Confidence 43110 0000 011122333333322211 11 23333
Q ss_pred hhhhhhhhHHHHHHhhcChhHHHHH-----HHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcc-----cccchH
Q 002041 424 VMLIAVADVLIDAASVLGGDATLKI-----LYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-----EAEVMP 493 (976)
Q Consensus 424 ~~~~~~~d~l~~~~~~l~~~~~l~~-----l~~~l~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~-----~~~~l~ 493 (976)
+..++.+++..- +...+. +.+.|.+.+. ..+|.-.+.++.+++.++..-+.. +...++
T Consensus 277 -----a~~~L~~L~~~~--~~~~~~~~~~~~v~~Lv~lL~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 344 (530)
T 1wa5_B 277 -----ACWAISYLSDGP--QEAIQAVIDVRIPKRLVELLS-----HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLP 344 (530)
T ss_dssp -----HHHHHHHHHSSC--HHHHHHHHHTTCHHHHHHGGG-----CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred -----HHHHHHHHhCCC--HHHHHHHHhcCcHHHHHHHHC-----CCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHH
Confidence 444555444221 111111 1223333332 457888999999999988643221 124456
Q ss_pred HHhhhccCCCCcHHHHHHHHHHHHhcHHHHhh------CCCCcchHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhh
Q 002041 494 QVMALLPKLPQQPQLLQTVCLTIGAYSKWFDA------ASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRK 567 (976)
Q Consensus 494 ~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~------~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~~ 567 (976)
.++..+.. .++.++..+++++|.++..-.. ... .++.++..+.. .+++ ++..|+.+|.+++.....
T Consensus 345 ~L~~lL~~--~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~---~l~~L~~lL~~--~~~~-v~~~a~~aL~~l~~~~~~ 416 (530)
T 1wa5_B 345 ALRLLLSS--PKENIKKEACWTISNITAGNTEQIQAVIDAN---LIPPLVKLLEV--AEYK-TKKEACWAISNASSGGLQ 416 (530)
T ss_dssp HHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---CHHHHHHHHHH--SCHH-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC---CHHHHHHHHhc--CCHH-HHHHHHHHHHHHHhcCCC
Confidence 66655542 2689999999999998742111 011 55666665532 2334 999999999999986532
Q ss_pred --hhhcCHH--HHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcC
Q 002041 568 --KLCGYLD--GLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 611 (976)
Q Consensus 568 --~L~~~l~--~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~ 611 (976)
....++- .++..+..++.. -+.+.+...+.+++.++...
T Consensus 417 ~~~~~~~l~~~~~l~~L~~ll~~-----~~~~v~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 417 RPDIIRYLVSQGCIKPLCDLLEI-----ADNRIIEVTLDALENILKMG 459 (530)
T ss_dssp CTHHHHHHHHTTCHHHHHHHTTT-----CCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHCCCHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHhh
Confidence 1111111 133344444432 24667778888888777653
No 36
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=96.97 E-value=0.76 Score=52.91 Aligned_cols=385 Identities=13% Similarity=0.088 Sum_probs=194.9
Q ss_pred HHHHHhcCC--CcchHHHHHHHHHHHhhhhccCCCCCccCchhHHH-HHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHH
Q 002041 223 VLTALSSLH--SEILSEASVNVISELIHYSAAGSSGGATVNMPLIQ-VIVPQIMSLKAHLTDSSKDEEDVKAIARLFADM 299 (976)
Q Consensus 223 ~~~~~~~L~--~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~-~l~~~v~~l~~~~~~~~~d~e~~~~~~~l~~~~ 299 (976)
++.++..|. +++....|+.++..+++..... ....++. .++|.+.. .+. ...+.+.....+..+..+
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~------~~~~~~~~g~v~~Lv~---lL~-~~~~~~v~~~A~~~L~~l 145 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSP------PIEEVIQSGVVPRFVQ---FLT-REDFPQLQFEAAWALTNI 145 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSC------CHHHHHHTTCHHHHHH---HHT-CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCc------hHHHHHHCCCHHHHHH---HhC-CCCCHHHHHHHHHHHHHH
Confidence 334444444 4567788999999988644211 1111221 12233222 222 222244444555566655
Q ss_pred hhH---HHHHHhcCCchhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHhhHHH
Q 002041 300 GDS---YVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSA 376 (976)
Q Consensus 300 ~~~---~~~~l~~~~~~~~~ll~~lL~~~~~~~~~vs~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (976)
+.. ....+... ..++.++.++..++.++...++..+..+...-. . .+..
T Consensus 146 ~~~~~~~~~~~~~~-----g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~-------------------~----~~~~ 197 (528)
T 4b8j_A 146 ASGTSENTKVVIDH-----GAVPIFVKLLGSSSDDVREQAVWALGNVAGDSP-------------------K----CRDL 197 (528)
T ss_dssp HTSCHHHHHHHHHT-----THHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCH-------------------H----HHHH
T ss_pred hCCCHHHHHHHHhC-----CcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCh-------------------h----hHHH
Confidence 542 22222211 357777788888888888888877666653210 0 0111
Q ss_pred HH--HHHHHHHhhccCCCCCCCCChhhhHHhHhhhhcccccCCccchhhhhhhhhhhHHHHHHhhcCh--hHHHHHHHHH
Q 002041 377 YE--SLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGG--DATLKILYIK 452 (976)
Q Consensus 377 ~~--~Ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~--~~~l~~l~~~ 452 (976)
+. ..+..++..+.... +. ..|.. +..++.+++..-.. .......++.
T Consensus 198 i~~~g~l~~Ll~lL~~~~-----~~-------~v~~~-----------------a~~~L~~L~~~~~~~~~~~~~~~l~~ 248 (528)
T 4b8j_A 198 VLANGALLPLLAQLNEHT-----KL-------SMLRN-----------------ATWTLSNFCRGKPQPSFEQTRPALPA 248 (528)
T ss_dssp HHHTTCHHHHHHTCCTTC-----CH-------HHHHH-----------------HHHHHHHHHCSSSCCCHHHHTTHHHH
T ss_pred HHHCCcHHHHHHHHhcCC-----CH-------HHHHH-----------------HHHHHHHHHcCCCCCcHHHHHHHHHH
Confidence 11 13333443332111 10 22333 44555555432110 1111223333
Q ss_pred HHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHh---
Q 002041 453 FVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFD--- 524 (976)
Q Consensus 453 l~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~-----~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~--- 524 (976)
|...+. +.++.-.+.++++++.++..-... +...++.++..+.. .++.++..+++++|..+.--.
T Consensus 249 L~~lL~-----~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~ 321 (528)
T 4b8j_A 249 LARLIH-----SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH--PSPSVLIPALRTVGNIVTGDDAQT 321 (528)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHC-----CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcC--CChhHHHHHHHHHHHHHcCCHHHH
Confidence 333321 457788899999999998653321 12456667766643 267899999999998864111
Q ss_pred ---hCCCCcchHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhhh---hh--cCHHHHHHHHHHHhhccCCCCCCHHh
Q 002041 525 ---AASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKK---LC--GYLDGLYNVYRTAVNGEGSLKVSAED 596 (976)
Q Consensus 525 ---~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~~~---L~--~~l~~ll~~~~~~~~~~~~~~l~~~~ 596 (976)
-+.. .++.++..+... . ...++..|+.++.+++...... +. ..++.+++.+.. -+.+.
T Consensus 322 ~~~~~~~---~l~~L~~lL~~~-~-~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~---------~~~~v 387 (528)
T 4b8j_A 322 QCIIDHQ---ALPCLLSLLTQN-L-KKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQT---------AEFDI 387 (528)
T ss_dssp HHHHTTT---HHHHHHHHHHSC-C-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHH---------SCHHH
T ss_pred HHHHHhh---hHHHHHHHHcCC-C-cHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhc---------CCHHH
Confidence 0111 455555544321 0 2359999999999999643322 22 445555554432 14678
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCC--------cc
Q 002041 597 SLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH--------PE 668 (976)
Q Consensus 597 ~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--------~~ 668 (976)
+...+.+++.+.....++....... ...+..+-.++.... ......++..+..+++.... ..
T Consensus 388 ~~~a~~aL~nl~~~~~~~~~~~l~~---~~~i~~L~~lL~~~d-------~~v~~~al~~L~~l~~~~~~~~~~~~~~~~ 457 (528)
T 4b8j_A 388 KKEAAWAISNATSGGSHDQIKYLVS---EGCIKPLCDLLICPD-------IRIVTVCLEGLENILKVGETDKTLAAGDVN 457 (528)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHH---TTCHHHHHHGGGCSC-------HHHHHHHHHHHHHHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHH---CCCHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 8899999999887744433322221 233344444554321 12233456666666654311 12
Q ss_pred cHHHHHHH--HhHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 002041 669 AVADAIQR--LWPIFKAIFDIRAWDMRTMESLCRACKYAVR 707 (976)
Q Consensus 669 ~~~~~~~~--~~~~l~~ll~~~~~~~~v~e~~~~~~~~~~~ 707 (976)
+....+.+ .+..+..+. ...+.++.+.+..++...+.
T Consensus 458 ~~~~~i~~~~~~~~l~~L~--~~~~~~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 458 VFSQMIDEAEGLEKIENLQ--SHDNNEIYEKAVKILEAYWM 496 (528)
T ss_dssp HHHHHHHHTTHHHHHHHGG--GCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCcHHHHHHHH--cCCCHHHHHHHHHHHHHHCC
Confidence 23333332 233333332 23467788877777765543
No 37
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.89 E-value=0.1 Score=58.82 Aligned_cols=334 Identities=15% Similarity=0.137 Sum_probs=172.3
Q ss_pred hHHHHHHHHHHHHhhhccCCCCCcccccc-hhHHHHHhcCCCc---chHHHHHHHHHHHhhhhccCCCCCccCchhHHH-
Q 002041 192 NELKEQVLEAFASWLRLKHRIPGSVLASH-PLVLTALSSLHSE---ILSEASVNVISELIHYSAAGSSGGATVNMPLIQ- 266 (976)
Q Consensus 192 ~~~~~~~l~~~~sWi~~~~~i~~~~l~~~-~l~~~~~~~L~~~---~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~- 266 (976)
++++..++.++...+......+...+... ..++.+...|.++ +.+..|+.++..+...... ....++.
T Consensus 34 ~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~-------~~~~~~~~ 106 (450)
T 2jdq_A 34 PEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSL-------QTRIVIQA 106 (450)
T ss_dssp HHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHH-------HHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH-------HHHHHHhC
Confidence 35778888888876542111111222233 6788888887654 6788899999998863210 0011111
Q ss_pred HHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhH---HHHHHhcCCchhHHHHHHHHhhccC-CCcchhhhhHHHHHH
Q 002041 267 VIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDS---YVELIATGSDESMLIVHALLEVASH-PEYDIASMTFNFWHS 342 (976)
Q Consensus 267 ~l~~~v~~l~~~~~~~~~d~e~~~~~~~l~~~~~~~---~~~~l~~~~~~~~~ll~~lL~~~~~-~~~~vs~~~l~fW~~ 342 (976)
..+|.+. ..+. +.+.+.....+..+..++.. ....+.+. ..++.++.++.. ++.++...+...+..
T Consensus 107 ~~i~~L~---~lL~--~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~-----~~i~~L~~~l~~~~~~~v~~~a~~~L~~ 176 (450)
T 2jdq_A 107 GAVPIFI---ELLS--SEFEDVQEQAVWALGNIAGDSTMCRDYVLDC-----NILPPLLQLFSKQNRLTMTRNAVWALSN 176 (450)
T ss_dssp THHHHHH---HHTT--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-----TCHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred CCHHHHH---HHHc--CCCHHHHHHHHHHHHHHccCCHHHHHHHHHC-----CCHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 1222222 2222 33555555666666666643 22222211 245666666664 567787777776655
Q ss_pred HHHHhcccccccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhhcccccCCccchh
Q 002041 343 LQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTE 422 (976)
Q Consensus 343 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~ 422 (976)
+...-. +... .. .. ..+++.++..+.- + +. +.|..
T Consensus 177 l~~~~~---------~~~~-----~~---~~----~~~l~~L~~~l~~-~-----~~-------~v~~~----------- 211 (450)
T 2jdq_A 177 LCRGKS---------PPPE-----FA---KV----SPCLNVLSWLLFV-S-----DT-------DVLAD----------- 211 (450)
T ss_dssp HHCCSS---------SCCC-----GG---GT----GGGHHHHHHHTTC-C-----CH-------HHHHH-----------
T ss_pred HhCCCC---------CCCC-----HH---HH----HHHHHHHHHHHcc-C-----CH-------HHHHH-----------
Confidence 553210 0000 00 11 1222233322221 1 11 22333
Q ss_pred hhhhhhhhhHHHHHHhhcChhHHHHH-----HHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcc-----cccch
Q 002041 423 SVMLIAVADVLIDAASVLGGDATLKI-----LYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-----EAEVM 492 (976)
Q Consensus 423 ~~~~~~~~d~l~~~~~~l~~~~~l~~-----l~~~l~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~-----~~~~l 492 (976)
+..++.+++.... + ..+. +.+.+.+.+ . ..+|.-.+.++.+++.++...+.. +...+
T Consensus 212 ------a~~~L~~l~~~~~-~-~~~~~~~~~~i~~L~~ll----~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l 278 (450)
T 2jdq_A 212 ------ACWALSYLSDGPN-D-KIQAVIDAGVCRRLVELL----M-HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSAL 278 (450)
T ss_dssp ------HHHHHHHHTSSSH-H-HHHHHHHTTTHHHHHHHT----T-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHH
T ss_pred ------HHHHHHHHHCCCc-H-HHHHHHHcCcHHHHHHHH----C-CCchhHHHHHHHHHHHHhhCChHHHHHHHHCccH
Confidence 4444444432111 1 1111 122233322 1 467888999999999998753321 12355
Q ss_pred HHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCC---cchHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhh-hh
Q 002041 493 PQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSD---PSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCR-KK 568 (976)
Q Consensus 493 ~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~---~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~-~~ 568 (976)
+.+++.+.. .++.+|..+++++|..+..-..+-+. ...++.++..+.. .++ +++..|+.++.+++.... ..
T Consensus 279 ~~L~~ll~~--~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~--~~~-~v~~~a~~~L~~l~~~~~~~~ 353 (450)
T 2jdq_A 279 QSLLHLLSS--PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQT--AEF-RTRKEAAWAITNATSGGSAEQ 353 (450)
T ss_dssp HHHHHHTTC--SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHH--SCH-HHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc--CCH-HHHHHHHHHHHHHHcCCCHHH
Confidence 666666543 37899999999999987421110000 0145555555533 233 499999999999997632 22
Q ss_pred hhcCH-HHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhc
Q 002041 569 LCGYL-DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (976)
Q Consensus 569 L~~~l-~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (976)
....+ ..++..+.+++.. -+.+.+...+++++.++..
T Consensus 354 ~~~l~~~~~i~~L~~ll~~-----~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 354 IKYLVELGCIKPLCDLLTV-----MDSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHHHHTCHHHHHHGGGS-----SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHh
Confidence 21111 1244444455543 2467788888888887765
No 38
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.83 E-value=0.39 Score=55.40 Aligned_cols=330 Identities=14% Similarity=0.118 Sum_probs=173.2
Q ss_pred CCCcchhhHHHHHHHHhhcccCcc------cccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhh------CCCCcc
Q 002041 464 HNEWRPAEAALFCIRAISTYVSVV------EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDA------ASSDPS 531 (976)
Q Consensus 464 ~~~w~~~Ea~L~~l~~i~e~~~~~------~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~------~p~~~~ 531 (976)
+.++.....++.+++.+...-... ....++.+++.+..- .++.++..++++++..+..-.. ...
T Consensus 98 s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g--- 173 (530)
T 1wa5_B 98 SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN-QPEMLQLEAAWALTNIASGTSAQTKVVVDAD--- 173 (530)
T ss_dssp CSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTT-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHHCC---
Confidence 346777777888888775432111 134667777766432 2689999999999987652111 112
Q ss_pred hHHHHHHHHHcccCCChHHHHHHHHHHHHHHHH---hhhhhh--cCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHH
Q 002041 532 ILASVLSILTSGMSTSEDTAAAAALAFRHICDD---CRKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSM 606 (976)
Q Consensus 532 ~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~---~~~~L~--~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~ 606 (976)
.++.++..+.. .++. ++..|+.+|.++|.+ ++..+. ..++.++.. +.. -+.+.+...+.+++.
T Consensus 174 ~i~~Lv~lL~~--~~~~-vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~l----l~~-----~~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 174 AVPLFIQLLYT--GSVE-VKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL----FNS-----NKPSLIRTATWTLSN 241 (530)
T ss_dssp CHHHHHHHHHH--CCHH-HHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHG----GGS-----CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcC--CCHH-HHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHH----hcc-----CCHHHHHHHHHHHHH
Confidence 46666666543 2334 999999999999964 444433 445555544 322 245678888999998
Q ss_pred HHhcC-ChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCCcccHHHHHH-HHhHHHHHH
Q 002041 607 VITEL-PQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQ-RLWPIFKAI 684 (976)
Q Consensus 607 vi~~~-p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~~~~l~~l 684 (976)
+...- |... .... ...+..+..++.... ......++..++.+... .+.....+.. .++|.+..+
T Consensus 242 L~~~~~~~~~-~~~~----~~~l~~L~~lL~~~d-------~~v~~~a~~~L~~L~~~--~~~~~~~~~~~~~v~~Lv~l 307 (530)
T 1wa5_B 242 LCRGKKPQPD-WSVV----SQALPTLAKLIYSMD-------TETLVDACWAISYLSDG--PQEAIQAVIDVRIPKRLVEL 307 (530)
T ss_dssp HHCCSSSCCC-HHHH----GGGHHHHHHHTTCCC-------HHHHHHHHHHHHHHHSS--CHHHHHHHHHTTCHHHHHHG
T ss_pred HhCCCCCCCc-HHHH----HhHHHHHHHHHcCCC-------HHHHHHHHHHHHHHhCC--CHHHHHHHHhcCcHHHHHHH
Confidence 88654 2211 1222 333444444444321 11222345555555432 1111222222 445555555
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHhhhhhh-----hhHHHHHHHHHHHHhhcCCccHHHHHHHHHHHhCCCCcchHHHHH
Q 002041 685 FDIRAWDMRTMESLCRACKYAVRTSKRFMG-----ITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHN 759 (976)
Q Consensus 685 l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~-----~~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~~~~~~~~~l~~ 759 (976)
+. ..+..+.+.++.+++.+....+.... ..+|.++..+ .. +......-+...+..+... ..+....
T Consensus 308 L~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL----~~-~~~~vr~~A~~aL~~l~~~--~~~~~~~ 378 (530)
T 1wa5_B 308 LS--HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL----SS-PKENIKKEACWTISNITAG--NTEQIQA 378 (530)
T ss_dssp GG--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT----TC-SCHHHHHHHHHHHHHHTTS--CHHHHHH
T ss_pred HC--CCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHH----cC-CCHHHHHHHHHHHHHHHcC--CHHHHHH
Confidence 54 34678888999888876542221111 2344444332 22 2233333333344444432 1122222
Q ss_pred HHH-HHHHHHHhhhcCcccCCCCCccHHHHHHHHHHHHhhCCC------cccCcCChHHHHHHHHHhcccCCchhHHHHH
Q 002041 760 LIE-ALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQ------LFIPSSVFPSLVDCSMIGITVQHREASNSIL 832 (976)
Q Consensus 760 ~~~-~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~------~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 832 (976)
++. .++.....++. ..++++.......+..+...... .+.....++.++.+ +...++.....++
T Consensus 379 ~~~~~~l~~L~~lL~-----~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~l----l~~~~~~v~~~al 449 (530)
T 1wa5_B 379 VIDANLIPPLVKLLE-----VAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDL----LEIADNRIIEVTL 449 (530)
T ss_dssp HHHTTCHHHHHHHHH-----HSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHH----TTTCCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHh-----cCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHH----HhCCCHHHHHHHH
Confidence 221 12222333343 24577888777777777765321 12222334444443 5556777778888
Q ss_pred HHHHHhhcc
Q 002041 833 TFLSDIFDL 841 (976)
Q Consensus 833 ~fl~~l~~~ 841 (976)
..+..++..
T Consensus 450 ~aL~~l~~~ 458 (530)
T 1wa5_B 450 DALENILKM 458 (530)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888888754
No 39
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=96.78 E-value=0.2 Score=57.93 Aligned_cols=331 Identities=15% Similarity=0.165 Sum_probs=175.8
Q ss_pred CCCcchhhHHHHHHHHhhcccC-cc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchHH-HH
Q 002041 464 HNEWRPAEAALFCIRAISTYVS-VV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILA-SV 536 (976)
Q Consensus 464 ~~~w~~~Ea~L~~l~~i~e~~~-~~-----~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~-~~ 536 (976)
+.++.....++.+++.+...-. +. ....++.+++.+.. +.++.++..++++++.++..-..+.. ..+. .+
T Consensus 85 s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~-~~~~~v~~~A~~~L~~l~~~~~~~~~--~~~~~g~ 161 (528)
T 4b8j_A 85 SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTR-EDFPQLQFEAAWALTNIASGTSENTK--VVIDHGA 161 (528)
T ss_dssp SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTC-TTCHHHHHHHHHHHHHHHTSCHHHHH--HHHHTTH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCC-CCCHHHHHHHHHHHHHHhCCCHHHHH--HHHhCCc
Confidence 3467777788888888754432 11 13567777777753 22489999999999988763111100 0110 24
Q ss_pred HHHHHcccCCC-hHHHHHHHHHHHHHHHH---hhhhhh--cCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhc
Q 002041 537 LSILTSGMSTS-EDTAAAAALAFRHICDD---CRKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (976)
Q Consensus 537 l~~l~~~l~~~-~~v~~~A~~al~~l~~~---~~~~L~--~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (976)
++.++..+.++ ..++..|+.+|.++|.+ ++..+. ..++.++.. +.. .-+...+..+..+++.+...
T Consensus 162 i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~l----L~~----~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 162 VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQ----LNE----HTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHT----CCT----TCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHH----Hhc----CCCHHHHHHHHHHHHHHHcC
Confidence 44455555443 24999999999999965 344443 345555543 311 13467788888999988877
Q ss_pred CChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCCcccHH-HHH-HHHhHHHHHHHHhh
Q 002041 611 LPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVA-DAI-QRLWPIFKAIFDIR 688 (976)
Q Consensus 611 ~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~~-~~~~~~l~~ll~~~ 688 (976)
-|.... .. ..+.+..+..++.... ......++..++.+... +.... .+. ..++|.+..++..
T Consensus 234 ~~~~~~-~~----~~~~l~~L~~lL~~~~-------~~v~~~a~~aL~~l~~~---~~~~~~~~~~~g~v~~Lv~lL~~- 297 (528)
T 4b8j_A 234 KPQPSF-EQ----TRPALPALARLIHSND-------EEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLLH- 297 (528)
T ss_dssp SSCCCH-HH----HTTHHHHHHHHTTCCC-------HHHHHHHHHHHHHHTSS---CHHHHHHHHHTTCHHHHHHHTTC-
T ss_pred CCCCcH-HH----HHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHcC---CHHHHHHHHHcCHHHHHHHHHcC-
Confidence 543221 11 2444444445554321 12223345555554432 22211 111 2345555555543
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhhh-----hhhHHHHHHHHHHHHhhcCCcc----HHHHHHHHHHHhCCCCcchHHHHH
Q 002041 689 AWDMRTMESLCRACKYAVRTSKRFM-----GITIGAILEEIQGLYQQHQQPC----FLYLSSEVIKIFGSDPSCASYLHN 759 (976)
Q Consensus 689 ~~~~~v~e~~~~~~~~~~~~~~~~~-----~~~l~~l~~~l~~~~~~~~~~~----~L~l~~~li~~~~~~~~~~~~l~~ 759 (976)
.+..+.+.++.+++.+........ ...+|.++..+. ...... ..++++.+.. + . .+....
T Consensus 298 -~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~----~~~~~~v~~~A~~~L~nl~~--~-~---~~~~~~ 366 (528)
T 4b8j_A 298 -PSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLT----QNLKKSIKKEACWTISNITA--G-N---KDQIQA 366 (528)
T ss_dssp -SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHH----SCCCHHHHHHHHHHHHHHHT--S-C---HHHHHH
T ss_pred -CChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHc----CCCcHHHHHHHHHHHHHHHC--C-C---HHHHHH
Confidence 357888889998887664322211 123455554433 211222 3344444432 2 1 122222
Q ss_pred HHH-HHHHHHHhhhcCcccCCCCCccHHHHHHHHHHHHhh-CCCc---ccCcCChHHHHHHHHHhcccCCchhHHHHHHH
Q 002041 760 LIE-ALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRY-CPQL---FIPSSVFPSLVDCSMIGITVQHREASNSILTF 834 (976)
Q Consensus 760 ~~~-~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~-~p~~---~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~f 834 (976)
++. .++.....++. ..++++...-...+..+... .|.. +.....++.++. .+...+......++..
T Consensus 367 ~~~~~~i~~L~~lL~-----~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~----lL~~~d~~v~~~al~~ 437 (528)
T 4b8j_A 367 VINAGIIGPLVNLLQ-----TAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCD----LLICPDIRIVTVCLEG 437 (528)
T ss_dssp HHHTTCHHHHHHHHH-----HSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHH----GGGCSCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHh-----cCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHH----HHcCCCHHHHHHHHHH
Confidence 221 12222333443 23677888777777777765 2321 112233444333 3566788888888898
Q ss_pred HHHhhcc
Q 002041 835 LSDIFDL 841 (976)
Q Consensus 835 l~~l~~~ 841 (976)
+..++..
T Consensus 438 L~~l~~~ 444 (528)
T 4b8j_A 438 LENILKV 444 (528)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888864
No 40
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.70 E-value=0.11 Score=64.75 Aligned_cols=86 Identities=9% Similarity=0.134 Sum_probs=71.4
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 002041 545 STSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLC 624 (976)
Q Consensus 545 ~~~~~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll 624 (976)
.....++.+++.+|++++...+..+.|+++.+++.+... ++..+....+.-+|.++.....+ ..+.+..++
T Consensus 712 ~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~--------~~~~e~~~fL~l~~qli~~f~~~-~~~~l~~ll 782 (980)
T 3ibv_A 712 GFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNS--------IDMNELVDVLSFISQLIHIYKDN-MMEITNRML 782 (980)
T ss_dssp CCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHH--------CCTTTHHHHHHHHHHHHHHTTTT-SHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 344459999999999999999999999999999988743 33456777788889999998876 779999999
Q ss_pred hHHHHHHHHHHhcCC
Q 002041 625 LPVVTPLQEIINQGP 639 (976)
Q Consensus 625 ~p~~~~l~~~~~~~~ 639 (976)
.|+++++..++++..
T Consensus 783 ~~l~~~if~~l~~~~ 797 (980)
T 3ibv_A 783 PTLLMRIFSSLSAAP 797 (980)
T ss_dssp HHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHhcCCC
Confidence 999999999988754
No 41
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.51 E-value=0.15 Score=64.48 Aligned_cols=320 Identities=10% Similarity=0.086 Sum_probs=165.3
Q ss_pred CcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccC-----CCh-HHHHHHHHHHHHHHHHhhhhhhcCHHHHH
Q 002041 504 QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMS-----TSE-DTAAAAALAFRHICDDCRKKLCGYLDGLY 577 (976)
Q Consensus 504 ~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~-----~~~-~v~~~A~~al~~l~~~~~~~L~~~l~~ll 577 (976)
.+.+.+.++++.+|..++-+....+ ..+++.+++++..... +++ .++..++..+.++++-.+.+ ..+++.++
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e-~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~~vl 542 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTE-KRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVI 542 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHH-HHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhh-HHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHHHHHH
Confidence 4678899999999988754322100 1268888888765221 122 25556888888888765553 24566666
Q ss_pred HHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHH----HHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhH
Q 002041 578 NVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAK----KALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVH 653 (976)
Q Consensus 578 ~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~----~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~ 653 (976)
+.+...+.. -....+.....++..++...+.. .. ..+..++.++++.+..++.... .......
T Consensus 543 ~~ll~~l~~-----~~~~V~~~A~~al~~l~~~~~~~-l~~~~~~~~~p~~~~il~~l~~~~~~~~-------~~~~~~~ 609 (1049)
T 3m1i_C 543 LKLFEFMHE-----THEGVQDMACDTFIKIVQKCKYH-FVIQQPRESEPFIQTIIRDIQKTTADLQ-------PQQVHTF 609 (1049)
T ss_dssp HHHHHHTTS-----SCHHHHHHHHHHHHHHHHHHTHH-HHSCCTTCSSCHHHHHHHTHHHHHTTSC-------HHHHHHH
T ss_pred HHHHHHhcC-----CCHHHHHHHHHHHHHHHHHHHHH-hhcccCCCCCcHHHHHHHHHHHHHHhCC-------HHHHHHH
Confidence 665555432 23567777777777777654321 11 0001345566666666666421 1223446
Q ss_pred HHHHHHHhhhcCCcccHHHHHHHHhHHHH----HHHHhh------cCCHHHH---HHHHHHHHHHHHHhhhhhhhhHHHH
Q 002041 654 IDRFAYIFRYVNHPEAVADAIQRLWPIFK----AIFDIR------AWDMRTM---ESLCRACKYAVRTSKRFMGITIGAI 720 (976)
Q Consensus 654 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~----~ll~~~------~~~~~v~---e~~~~~~~~~~~~~~~~~~~~l~~l 720 (976)
.++++.++.....++...+++..+++.+. .++... ..+.+.. -.++.++..+.+.+|..+.|+++.+
T Consensus 610 ~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i 689 (1049)
T 3m1i_C 610 YKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHI 689 (1049)
T ss_dssp HHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 78888888766433345555666665432 222211 1133222 2345566677788888888777766
Q ss_pred HHHHHHHHhhc-----------C-----Cc------cHHHHHHHHHHHhCCCCc-chHHHHHHHHHHHHHHHhhhcCccc
Q 002041 721 LEEIQGLYQQH-----------Q-----QP------CFLYLSSEVIKIFGSDPS-CASYLHNLIEALFKRTTCLLTSIEE 777 (976)
Q Consensus 721 ~~~l~~~~~~~-----------~-----~~------~~L~l~~~li~~~~~~~~-~~~~l~~~~~~l~~~~~~~l~~~~~ 777 (976)
...+...|+.. . ++ .+...+..++..|.++.. ........+..++...++.+...
T Consensus 690 ~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~~~~~-- 767 (1049)
T 3m1i_C 690 YYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNN-- 767 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 55433333320 0 00 011122223333322211 11112222222333333333210
Q ss_pred CCCCCccHHHHHHHHHHHHhhCCCcccC--cCChHHHHHHHHHhcc---cCCchhHHHHHHHHHHhhccc
Q 002041 778 FTSRPDVADDCFLLASRCIRYCPQLFIP--SSVFPSLVDCSMIGIT---VQHREASNSILTFLSDIFDLA 842 (976)
Q Consensus 778 ~~~~pD~~~~~f~l~~~~~~~~p~~~~~--~~~l~~~~~~~~~~l~---~~~~~~~~~~~~fl~~l~~~~ 842 (976)
...-.| ..++.+++.++.+.+..+-+ ...+..++.+....+. ..+++...+.+.|+.+++..+
T Consensus 768 ~~~~~~--~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~ 835 (1049)
T 3m1i_C 768 VPDARD--AEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKS 835 (1049)
T ss_dssp CGGGCC--THHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHC
T ss_pred Cccccc--HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhC
Confidence 000011 46788888888766543322 1233444444333232 356888899999999988643
No 42
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.46 E-value=0.089 Score=65.43 Aligned_cols=315 Identities=12% Similarity=0.151 Sum_probs=166.9
Q ss_pred cHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCC--h--H--HHHHHHHHHHHHHHHhhhhhhcCHHHHHH
Q 002041 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS--E--D--TAAAAALAFRHICDDCRKKLCGYLDGLYN 578 (976)
Q Consensus 505 ~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~--~--~--v~~~A~~al~~l~~~~~~~L~~~l~~ll~ 578 (976)
+...+.+.|+.+|..++-+.... ...+++.+++++++-..++ + + ++...++.+.+.++=.+.+ ..+++.+++
T Consensus 492 sW~~lea~~~aigaIag~~~~~~-E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h-~~~L~~vl~ 569 (1073)
T 3gjx_A 492 SWKNLNTLCWAIGSISGAMHEED-EKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAH-WKFLKTVVN 569 (1073)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHH-HHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHH
T ss_pred CHHHHhHHHHHHHHHHCcCCccc-ccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhC-HHHHHHHHH
Confidence 68899999999999976433210 1138999999997655443 1 1 3333345555555544433 235666666
Q ss_pred HHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChH-------HHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhh
Q 002041 579 VYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQV-------DAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLT 651 (976)
Q Consensus 579 ~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~-------~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~ 651 (976)
.+...+.. -....+.....++..+.+.-+.. +..++ +.++++.+.++.... ..+...
T Consensus 570 ~L~~~m~~-----~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~----i~~il~~~~~~~~~l-------~~~~~~ 633 (1073)
T 3gjx_A 570 KLFEFMHE-----THDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPF----IDEILNNINTIICDL-------QPQQVH 633 (1073)
T ss_dssp HHHHHTTC-----CSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCH----HHHHHTSHHHHHTTC-------CHHHHH
T ss_pred HHHHHHhc-----CCHHHHHHHHHHHHHHHHHHHHHHhhccccccchH----HHHHHHHHHHHHHhc-------CHHHHH
Confidence 65555432 12344666666666666553321 11123 344545555554433 234445
Q ss_pred hHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhh----------cCCHHHHHHHHHHHH---HHHHHhhhhhhhhHH
Q 002041 652 VHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIR----------AWDMRTMESLCRACK---YAVRTSKRFMGITIG 718 (976)
Q Consensus 652 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~----------~~~~~v~e~~~~~~~---~~~~~~~~~~~~~l~ 718 (976)
...+.+|.++...........+++.+++....-.... ..|++.+..+..+++ .+..++|..+.|.+.
T Consensus 634 ~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~ 713 (1073)
T 3gjx_A 634 TFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLG 713 (1073)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHHHHHH
Confidence 5678889888876432223445555554433322221 124554455554444 445567777777777
Q ss_pred HHHHHHHHHHhhc----------------CCc--cHHHHHH----HHHH-HhCCCCcchHHHHHHHHHHHHHHHhhhcCc
Q 002041 719 AILEEIQGLYQQH----------------QQP--CFLYLSS----EVIK-IFGSDPSCASYLHNLIEALFKRTTCLLTSI 775 (976)
Q Consensus 719 ~l~~~l~~~~~~~----------------~~~--~~L~l~~----~li~-~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~ 775 (976)
++..-+.+.|+.. ..+ -.+..+. .++. -.++.++......+++.+++..++.-..
T Consensus 714 ~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~-- 791 (1073)
T 3gjx_A 714 RIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQ-- 791 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHh--
Confidence 6665555444320 111 1122222 1222 2333333333344444555554443222
Q ss_pred ccCCCCCccH-HHHHHHHHHHHhhCCCcccC--cCChHHHHHHHHHhcc---cCCchhHHHHHHHHHHhhccc
Q 002041 776 EEFTSRPDVA-DDCFLLASRCIRYCPQLFIP--SSVFPSLVDCSMIGIT---VQHREASNSILTFLSDIFDLA 842 (976)
Q Consensus 776 ~~~~~~pD~~-~~~f~l~~~~~~~~p~~~~~--~~~l~~~~~~~~~~l~---~~~~~~~~~~~~fl~~l~~~~ 842 (976)
+..|+.. .+++++++.++++....+.+ ...++.+|.+.+.=++ ..+|+....-++++..+...+
T Consensus 792 ---~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~ 861 (1073)
T 3gjx_A 792 ---RNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHC 861 (1073)
T ss_dssp ---HSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHC
T ss_pred ---cCCcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHH
Confidence 2344443 34677888888776554433 1346677776654443 467777777888888777643
No 43
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.39 E-value=2 Score=50.33 Aligned_cols=223 Identities=9% Similarity=0.034 Sum_probs=119.9
Q ss_pred CCcchhhHHHHHHHHhhcccCcccccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchHH--HHHHHHHc
Q 002041 465 NEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILA--SVLSILTS 542 (976)
Q Consensus 465 ~~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~--~~l~~l~~ 542 (976)
.+-..+-.||.+++.+... +--...++.+...+.+-..+|.||++++..+.++.. .+|+ .++ ..++.+..
T Consensus 123 ~n~~ir~lALr~L~~i~~~--e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~---~~p~---~~~~~~~~~~l~~ 194 (621)
T 2vgl_A 123 RNPTFMGLALHCIANVGSR--EMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYR---TSPD---LVPMGDWTSRVVH 194 (621)
T ss_dssp CCHHHHHHHHHHHHHHCCH--HHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHH---HCGG---GCCCCSCHHHHHH
T ss_pred CCHHHHHHHHHHhhccCCH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH---hChh---hcCchhHHHHHHH
Confidence 3444566788888887541 101223344444442223489999999999988776 3444 333 34444555
Q ss_pred ccCCCh-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCC--CC------CCHHhHHHHHHHHHHHHhcCCh
Q 002041 543 GMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGS--LK------VSAEDSLHLVEALSMVITELPQ 613 (976)
Q Consensus 543 ~l~~~~-~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~--~~------l~~~~~~~l~eai~~vi~~~p~ 613 (976)
.+.+++ .|..+|..++..+|......+.++++.+++.+.+++..++- .. -++--+..+++.++.+... ++
T Consensus 195 lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~-~d 273 (621)
T 2vgl_A 195 LLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPP-ED 273 (621)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSC-SS
T ss_pred HhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCC-CC
Confidence 555442 49999999999999987777778888888888887653200 00 0356788888888765422 11
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcc--hhhhHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcCC
Q 002041 614 VDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPR--DLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWD 691 (976)
Q Consensus 614 ~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~--~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 691 (976)
.+....+..++..+++.+ .+...+ . ..+.+ ......+++.+++... +. ......+.+.+..++. ..+
T Consensus 274 ~~~~~~l~~~L~~il~~~---~~~~ks-~-~l~~~n~~~aVl~ea~~~i~~l~--~~--~~~~~~~~~~L~~~L~--~~~ 342 (621)
T 2vgl_A 274 PAVRGRLTECLETILNKA---QEPPKS-K-KVQHSNAKNAVLFEAISLIIHHD--SE--PNLLVRACNQLGQFLQ--HRE 342 (621)
T ss_dssp HHHHHHHHHHHHHHHHHH---HSCCSC-S-SHHHHHHHHHHHHHHHHHHHHHC--CC--HHHHHHHHHHHHHHSS--CSC
T ss_pred HHHHHHHHHHHHHHHHhh---ccCccc-c-cccccchHHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHHHHHhc--CCC
Confidence 233333333333333321 111100 0 00001 1133455666555432 11 1333445555554443 345
Q ss_pred HHHHHHHHHHHHHHHH
Q 002041 692 MRTMESLCRACKYAVR 707 (976)
Q Consensus 692 ~~v~e~~~~~~~~~~~ 707 (976)
+.+.-.+.+.+.++..
T Consensus 343 ~niry~aL~~l~~l~~ 358 (621)
T 2vgl_A 343 TNLRYLALESMCTLAS 358 (621)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHh
Confidence 6665555666655543
No 44
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=95.97 E-value=0.56 Score=52.54 Aligned_cols=332 Identities=14% Similarity=0.121 Sum_probs=165.6
Q ss_pred CCcchhhHHHHHHHHhhc-ccCcc-----cc-cchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchH-HHH
Q 002041 465 NEWRPAEAALFCIRAIST-YVSVV-----EA-EVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASV 536 (976)
Q Consensus 465 ~~w~~~Ea~L~~l~~i~e-~~~~~-----~~-~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l-~~~ 536 (976)
.+....+.++.+++.+.. .-... .. ..++.+++.+..- .++.++..++++++..+..-..+.. ... ..+
T Consensus 32 ~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~-~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~ 108 (450)
T 2jdq_A 32 KSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRK-ENCTLQFESAWVLTNIASGNSLQTR--IVIQAGA 108 (450)
T ss_dssp SCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCT-TCHHHHHHHHHHHHHHHSSCHHHHH--HHHHTTH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCC-CCHHHHHHHHHHHHHHhcCCHHHHH--HHHhCCC
Confidence 345567788888877642 11111 12 4566666666432 2688999999999887642111000 000 123
Q ss_pred HHHHHcccCCC-hHHHHHHHHHHHHHHHH---hhhhhh--cCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhc
Q 002041 537 LSILTSGMSTS-EDTAAAAALAFRHICDD---CRKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (976)
Q Consensus 537 l~~l~~~l~~~-~~v~~~A~~al~~l~~~---~~~~L~--~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (976)
++.+.+.+.++ ..++..|+.+|.+++.+ ++..+. ..++.++.. +.. .-+.+.+...+.+++.+...
T Consensus 109 i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~----l~~----~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 109 VPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQL----FSK----QNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHH----TTS----CCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHH----hcC----CCCHHHHHHHHHHHHHHhCC
Confidence 44444445443 24999999999999974 334332 345555443 331 13467888999999998865
Q ss_pred C-ChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCCcccHHHH-H-HHHhHHHHHHHHh
Q 002041 611 L-PQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADA-I-QRLWPIFKAIFDI 687 (976)
Q Consensus 611 ~-p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~-~-~~~~~~l~~ll~~ 687 (976)
. |... ... ....+..+.+++.... ......+...++.+... ..+.... . ..++|.+..++.
T Consensus 181 ~~~~~~-~~~----~~~~l~~L~~~l~~~~-------~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~~L~~ll~- 244 (450)
T 2jdq_A 181 KSPPPE-FAK----VSPCLNVLSWLLFVSD-------TDVLADACWALSYLSDG---PNDKIQAVIDAGVCRRLVELLM- 244 (450)
T ss_dssp SSSCCC-GGG----TGGGHHHHHHHTTCCC-------HHHHHHHHHHHHHHTSS---SHHHHHHHHHTTTHHHHHHHTT-
T ss_pred CCCCCC-HHH----HHHHHHHHHHHHccCC-------HHHHHHHHHHHHHHHCC---CcHHHHHHHHcCcHHHHHHHHC-
Confidence 4 2211 111 2333333444444221 11122234445544432 1111111 1 234555555553
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhhhhhh-----hhHHHHHHHHHHHHhhcCCccHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 002041 688 RAWDMRTMESLCRACKYAVRTSKRFMG-----ITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIE 762 (976)
Q Consensus 688 ~~~~~~v~e~~~~~~~~~~~~~~~~~~-----~~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~ 762 (976)
..+.++.+.++.+++.+......... ..+|.++..+ .. +.+....-+...+..+... ..+....++.
T Consensus 245 -~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll----~~-~~~~vr~~a~~~L~~l~~~--~~~~~~~~~~ 316 (450)
T 2jdq_A 245 -HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLL----SS-PKESIKKEACWTISNITAG--NRAQIQTVID 316 (450)
T ss_dssp -CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHT----TC-SSHHHHHHHHHHHHHHTTS--CHHHHHHHHH
T ss_pred -CCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHH----cC-CCHHHHHHHHHHHHHHHcC--CHHHHHHHHH
Confidence 35678889999988876543222111 2344444432 22 2223322333333333322 1122222221
Q ss_pred -HHHHHHHhhhcCcccCCCCCccHHHHHHHHHHHHhhC-CCc---ccCcCChHHHHHHHHHhcccCCchhHHHHHHHHHH
Q 002041 763 -ALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYC-PQL---FIPSSVFPSLVDCSMIGITVQHREASNSILTFLSD 837 (976)
Q Consensus 763 -~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~-p~~---~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~ 837 (976)
.++.....++. +.++++.......+..+.... |.. ++....++.++ ..+...+......++..+..
T Consensus 317 ~~~l~~L~~~l~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~----~ll~~~~~~v~~~a~~aL~~ 387 (450)
T 2jdq_A 317 ANIFPALISILQ-----TAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLC----DLLTVMDSKIVQVALNGLEN 387 (450)
T ss_dssp TTHHHHHHHHHH-----HSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHH----HGGGSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHh-----cCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHH----HHhcCCCHHHHHHHHHHHHH
Confidence 22333334443 346778888777777777652 221 11122333333 33555566677777777777
Q ss_pred hhc
Q 002041 838 IFD 840 (976)
Q Consensus 838 l~~ 840 (976)
++.
T Consensus 388 l~~ 390 (450)
T 2jdq_A 388 ILR 390 (450)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 45
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=95.59 E-value=1 Score=54.63 Aligned_cols=289 Identities=9% Similarity=0.035 Sum_probs=139.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhc---ChhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCCCChhhH---
Q 002041 7 VKEALNALYHHPDDAVRMQADRWLQDFQH---TIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAV--- 80 (976)
Q Consensus 7 v~~al~~ly~~~d~~~r~~A~~~L~~~q~---s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~--- 80 (976)
+...++.|. .++.+.|..+-+.|..... ..++|.....+|.+ .+..+|-.|+.+|.+..... +.+
T Consensus 117 i~~lv~~L~-~~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~~--~d~~vr~~A~~~L~~L~~~~------~~~~~i 187 (780)
T 2z6g_A 117 HPTNVQRLA-EPSQMLKHAVVNLINYQDDAELATRAIPELTKLLND--EDQVVVNKAAVMVHQLSKKE------ASRHAI 187 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHHTSH------HHHHHH
T ss_pred HHHHHHHhc-CccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHCC--CCHHHHHHHHHHHHHHhCCC------hhHHHH
Confidence 455566663 4455666666555542211 26778888888874 57789999999998755421 111
Q ss_pred ---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccc-ccCCccchHHHHHhcCCCC-CcHHHHHHHHhhccccc
Q 002041 81 ---RGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAE-DWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEV 155 (976)
Q Consensus 81 ---~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~~~-~W~~~~~~~~l~~~l~~~~-~~~~~~L~~L~~l~EE~ 155 (976)
..+-..|+..|.+ ..+..++...+.+|..+....... .-.+.+.++.+++.+.+.. ......+..|..|+..-
T Consensus 188 ~~~~~~i~~Lv~~L~~--~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~ 265 (780)
T 2z6g_A 188 MRSPQMVSAIVRTMQN--TNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ 265 (780)
T ss_dssp TTCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred HhccChHHHHHHHHcC--CCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 1233444444443 125678888888888765432100 0000025677777776543 23345566666655431
Q ss_pred ccccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhh--hHHHHHHHHHHHHhhhccCCCCCcccccchhHHHHHhcCCCc
Q 002041 156 FNYKIAARPERRRQFEKELTSQMEVALSTLTACLHI--NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE 233 (976)
Q Consensus 156 ~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~--~~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~~~~~L~~~ 233 (976)
. ..+..+.+ ..++..+...+.+ ..+...++.|+..|..-.. -....+.....++.+...|.+.
T Consensus 266 ~--------~~~~~v~~------~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~-e~~~~i~~~~~i~~Lv~lL~~~ 330 (780)
T 2z6g_A 266 E--------GAKMAVRL------AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ-ESKLIILASGGPQALVNIMRTY 330 (780)
T ss_dssp T--------THHHHHHH------TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH-HHHHHHHTTTHHHHHHHHHTTC
T ss_pred h--------hhHHHHHH------cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh-HHHHHHHHcCCHHHHHHHHhcC
Confidence 1 11111110 1223334444443 3567788888888874210 0000112234455555555543
Q ss_pred ---chHHHHHHHHHHHhhhhccCCCCCccCchhHHH-HHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHHHHhc
Q 002041 234 ---ILSEASVNVISELIHYSAAGSSGGATVNMPLIQ-VIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIAT 309 (976)
Q Consensus 234 ---~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~-~l~~~v~~l~~~~~~~~~d~e~~~~~~~l~~~~~~~~~~~l~~ 309 (976)
.....++.++..+..... ....+++ ..++.++.+ + .+.+.+..+..+..+..++....
T Consensus 331 ~~~~~~~~a~~aL~~Ls~~~~--------~~~~i~~~g~l~~Ll~l---L--~~~~~~~~~~a~~~L~~L~~~~~----- 392 (780)
T 2z6g_A 331 TYEKLLWTTSRVLKVLSVCSS--------NKPAIVEAGGMQALGLH---L--TDPSQRLVQNCLWTLRNLSDAAT----- 392 (780)
T ss_dssp CCHHHHHHHHHHHHHHHTSTT--------HHHHHHHTTHHHHHGGG---T--TCSCHHHHHHHHHHHHHHHTTCT-----
T ss_pred CHHHHHHHHHHHHHHhhcChH--------HHHHHHHhchHHHHHHH---H--cCCchHHHHHHHHHHHHHhccch-----
Confidence 234456666666553210 1111211 122222221 1 12344555555555555543221
Q ss_pred CCchhHHHHHHHHhhccCCCcchhhhhHHH
Q 002041 310 GSDESMLIVHALLEVASHPEYDIASMTFNF 339 (976)
Q Consensus 310 ~~~~~~~ll~~lL~~~~~~~~~vs~~~l~f 339 (976)
.......+++.++.++..++.++...+...
T Consensus 393 ~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~a 422 (780)
T 2z6g_A 393 KQEGMEGLLGTLVQLLGSDDINVVTCAAGI 422 (780)
T ss_dssp TCSCCHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHcCCCHHHHHHHHHH
Confidence 011235677788888777777776655444
No 46
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=95.58 E-value=6 Score=47.81 Aligned_cols=255 Identities=12% Similarity=0.067 Sum_probs=134.3
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhc----------ChhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHH
Q 002041 13 ALYHHPDDAVRMQADRWLQDFQH----------TIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRG 82 (976)
Q Consensus 13 ~ly~~~d~~~r~~A~~~L~~~q~----------s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~~~ 82 (976)
.+....|+..|..|-..|..+-. .+++......+|.+ +.+.++|..|+.+|++ +... +......
T Consensus 157 ~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~-~~d~~vr~~Aa~aL~~-Ls~~----~~~~~~i 230 (780)
T 2z6g_A 157 KLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTSGTLHN-LSHH----REGLLAI 230 (780)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH-HHTS----HHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcC-CCCHHHHHHHHHHHHH-HhCC----chhHHHH
Confidence 34457789999999999988776 45667777777765 3578899999999998 4322 1111122
Q ss_pred HHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhccccccC---CccchHHHHHhcCCCC-CcHHHHHHHHhhccccccc
Q 002041 83 LQDSLNTLLKKFH-KGPPKVRTQISIAVAALAVHISAEDWG---GGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEVFN 157 (976)
Q Consensus 83 lr~~Ll~~l~~~~-~~~~~v~~kL~~~La~l~~~~~~~~W~---~~~~~~~l~~~l~~~~-~~~~~~L~~L~~l~EE~~~ 157 (976)
.+...+..|.... .+...++...+.+|..+...... ... +.+.++.+++.+.+.. ......+..|..+...
T Consensus 231 ~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~-~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~--- 306 (780)
T 2z6g_A 231 FKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG--- 306 (780)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT-HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT---
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChh-hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcC---
Confidence 2333455555533 34577888888888888764321 110 0125677777776532 2233444455444321
Q ss_pred ccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhccCCCCCcccccchhHHHHHhcCCCc--ch
Q 002041 158 YKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE--IL 235 (976)
Q Consensus 158 ~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~~~~~L~~~--~~ 235 (976)
.++-|..+.+ ....+.++.++... ........+..++....... -....+.....++.+...|.++ +.
T Consensus 307 -----~~e~~~~i~~--~~~i~~Lv~lL~~~-~~~~~~~~a~~aL~~Ls~~~--~~~~~i~~~g~l~~Ll~lL~~~~~~~ 376 (780)
T 2z6g_A 307 -----NQESKLIILA--SGGPQALVNIMRTY-TYEKLLWTTSRVLKVLSVCS--SNKPAIVEAGGMQALGLHLTDPSQRL 376 (780)
T ss_dssp -----CHHHHHHHHT--TTHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHTST--THHHHHHHTTHHHHHGGGTTCSCHHH
T ss_pred -----ChHHHHHHHH--cCCHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcCh--HHHHHHHHhchHHHHHHHHcCCchHH
Confidence 0111111111 11233334433321 11123334455544433210 0011233445677788877653 56
Q ss_pred HHHHHHHHHHHhhhhccCCCCCccCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhh
Q 002041 236 SEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGD 301 (976)
Q Consensus 236 ~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~v~~l~~~~~~~~~d~e~~~~~~~l~~~~~~ 301 (976)
...|+.++..+....... ... ..+++.+..+ + ...|.+.....+..+..++.
T Consensus 377 ~~~a~~~L~~L~~~~~~~-----~~~----~~~i~~Lv~l---L--~~~d~~vr~~A~~aL~~L~~ 428 (780)
T 2z6g_A 377 VQNCLWTLRNLSDAATKQ-----EGM----EGLLGTLVQL---L--GSDDINVVTCAAGILSNLTC 428 (780)
T ss_dssp HHHHHHHHHHHHTTCTTC-----SCC----HHHHHHHHHH---T--TCSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhccchhh-----hhh----hhHHHHHHHH---H--cCCCHHHHHHHHHHHHHHHh
Confidence 777888888887544211 011 2333333222 2 23456666677777777765
No 47
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=95.06 E-value=3.3 Score=47.31 Aligned_cols=314 Identities=11% Similarity=0.157 Sum_probs=149.1
Q ss_pred cchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchHH-HHHHHHHcccCCCh-HHHHHHHHHHHHHHHH---
Q 002041 490 EVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILA-SVLSILTSGMSTSE-DTAAAAALAFRHICDD--- 564 (976)
Q Consensus 490 ~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~-~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~--- 564 (976)
..+|.++++|..- .++.++..++++++..+.--..+.. .... .+++.|+..+.++. .++..|+.||.+++.+
T Consensus 100 G~ip~LV~lL~~~-~~~~lq~~Aa~aL~nias~~~e~~~--~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~ 176 (510)
T 3ul1_B 100 GLIPKFVSFLGKT-DCSPIQFESAWALTNIASGTSEQTK--AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 176 (510)
T ss_dssp THHHHHHHHTTCT-TCHHHHHHHHHHHHHHHTSCHHHHH--HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHCCC-CCHHHHHHHHHHHHHHhcCCHHHHH--HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 3567777766543 3689999999999987632111100 0111 24455555566543 5999999999999854
Q ss_pred hhhhhh--cCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCcc
Q 002041 565 CRKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEIL 642 (976)
Q Consensus 565 ~~~~L~--~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~ 642 (976)
++..+. .-++.++..+ ..++...........+..+++.+...-.+.........++. .+.+++....
T Consensus 177 ~r~~v~~~G~i~~Ll~lL----~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp----~L~~LL~~~~--- 245 (510)
T 3ul1_B 177 FRDLVIKHGAIDPLLALL----AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP----TLVRLLHHND--- 245 (510)
T ss_dssp HHHHHHHTTCHHHHHHHT----CSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHH----HHHHHTTCSC---
T ss_pred HHHHHHHcCChHHHHHHH----HhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHH----HHHHHHhcCC---
Confidence 455443 4466555443 22111122333455566666666554322111122222233 3334443221
Q ss_pred cccCcchhhhHHHHHHHHhhhcCCcccHHHHH--HHHhHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhhhhh-----h
Q 002041 643 QKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI--QRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMG-----I 715 (976)
Q Consensus 643 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~--~~~~~~l~~ll~~~~~~~~v~e~~~~~~~~~~~~~~~~~~-----~ 715 (976)
......+..+++.+.. .+......+ ..+.|.+..++.. .+..+.+.++++++.+......... .
T Consensus 246 ----~~v~~~A~~aL~~L~~---~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g 316 (510)
T 3ul1_B 246 ----PEVLADSCWAISYLTD---GPNERIEMVVKKGVVPQLVKLLGA--TELPIVTPALRAIGNIVTGTDEQTQKVIDAG 316 (510)
T ss_dssp ----HHHHHHHHHHHHHHTS---SCHHHHHHHHTTTCHHHHHHHHTC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHHHHHhh---chhhhHHHHHhcccchhhhhhhcC--CChhhhhHHHHHHHHhhcCCHHHHHHHhhcc
Confidence 1112223444444432 121111111 2345555555543 5677888888888765432111111 1
Q ss_pred hHHHHHHHHHHHHhhcCCccHHHHHHHHHHHhCCCCcchHHHHHHHH-HHHHHHHhhhcCcccCCCCCccHHHHHHHHHH
Q 002041 716 TIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIE-ALFKRTTCLLTSIEEFTSRPDVADDCFLLASR 794 (976)
Q Consensus 716 ~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~-~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~ 794 (976)
.++.++.++ .++.......+...+....... ......++. .++.....++. ..++++...-...+..
T Consensus 317 ~l~~L~~LL-----~~~~~~v~~~A~~aL~nl~a~~--~~~~~~v~~~g~i~~Lv~lL~-----~~~~~v~~~Aa~aL~N 384 (510)
T 3ul1_B 317 ALAVFPSLL-----TNPKTNIQKEATWTMSNITAGR--QDQIQQVVNHGLVPFLVGVLS-----KADFKTQKEAAWAITN 384 (510)
T ss_dssp GGGGCC-CT-----TCSSHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHHHH-----SSCHHHHHHHHHHHHH
T ss_pred chHHHHHHh-----cCCCHHHHHHHHHHHHHHHcCc--HHHHHHHHhcCCHHHHHHHHc-----CCCHHHHHHHHHHHHH
Confidence 122222211 1222223233333333333221 111111111 12222333343 3456676665555555
Q ss_pred HHhhCC-C---cccCcCChHHHHHHHHHhcccCCchhHHHHHHHHHHhhccc
Q 002041 795 CIRYCP-Q---LFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLA 842 (976)
Q Consensus 795 ~~~~~p-~---~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~l~~~~ 842 (976)
+..... . .+.....++.++++ +...+......++..+..++..+
T Consensus 385 l~~~~~~~~~~~L~~~g~i~~L~~L----L~~~d~~i~~~~L~aL~nil~~~ 432 (510)
T 3ul1_B 385 YTSGGTVEQIVYLVHCGIIEPLMNL----LSAKDTKIIQVILDAISNIFQAA 432 (510)
T ss_dssp HHHHCCHHHHHHHHHTTCHHHHHHG----GGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHccCCHHHHHHHHHCCCHHHHHHH----hcCCCHHHHHHHHHHHHHHHHHh
Confidence 554322 1 12233445555554 66778888889999888888654
No 48
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=94.44 E-value=4.7 Score=46.24 Aligned_cols=310 Identities=11% Similarity=0.165 Sum_probs=148.7
Q ss_pred cchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchH-HHHHHHHHcccCCCh-HHHHHHHHHHHHHHH---H
Q 002041 490 EVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVLSILTSGMSTSE-DTAAAAALAFRHICD---D 564 (976)
Q Consensus 490 ~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l-~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~---~ 564 (976)
..+|.+++.|..- .++.++..++++++..+..-..+.. ..+ ..+++.|+..+.++. .++..|+.||.+++. .
T Consensus 119 G~ip~Lv~lL~~~-~~~~~q~~Aa~aL~nia~~~~~~~~--~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~ 195 (529)
T 3tpo_A 119 GLIPKFVSFLGKT-DCSPIQFESAWALTNIASGTSEQTK--AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSA 195 (529)
T ss_dssp THHHHHHHHHTCT-TCHHHHHHHHHHHHHHHTSCHHHHH--HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHcCC-CCHHHHHHHHHHHHHHHcCCHHHHH--HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHH
Confidence 4567777766543 3788999999999987642211110 011 124455555566543 599999999999985 4
Q ss_pred hhhhhh--cCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCcc
Q 002041 565 CRKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEIL 642 (976)
Q Consensus 565 ~~~~L~--~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~ 642 (976)
++..+. +-++.++..+ ..++...........+..+++.+...-.+.........++ ..+..++....
T Consensus 196 ~r~~i~~~g~i~~Ll~lL----~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l----p~L~~LL~~~~--- 264 (529)
T 3tpo_A 196 FRDLVIKHGAIDPLLALL----AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL----PTLVRLLHHND--- 264 (529)
T ss_dssp HHHHHHHTTCHHHHHHTT----CSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHH----HHHHHHTTSSC---
T ss_pred HHHHHHHcCCcHHHHHHH----hccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHH----HHHHHHhcCCc---
Confidence 555554 4455555443 2211112233344555666666554432211112222222 33334444321
Q ss_pred cccCcchhhhHHHHHHHHhhhcCCcccHHHHH--HHHhHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhhhh-----hh
Q 002041 643 QKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI--QRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFM-----GI 715 (976)
Q Consensus 643 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~--~~~~~~l~~ll~~~~~~~~v~e~~~~~~~~~~~~~~~~~-----~~ 715 (976)
......+..+++.+.. .+......+ ..++|.+..++.. .+..+.+.++++++.+........ ..
T Consensus 265 ----~~v~~~a~~aL~~l~~---~~~~~~~~v~~~g~i~~Lv~lL~~--~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g 335 (529)
T 3tpo_A 265 ----PEVLADSCWAISYLTD---GPNERIEMVVKKGVVPQLVKLLGA--TELPIVTPALRAIGNIVTGTDEQTQKVIDAG 335 (529)
T ss_dssp ----HHHHHHHHHHHHHHHS---SCHHHHHHHHTTTCHHHHHHHHTC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHHHHhhh---hhhhhHHHHHhccchHHHHHHhcC--CChhHHHHHHHHHHHHHccchHHHHHHhhcc
Confidence 1122233444444433 222211111 2345555555543 567788888888887653211111 11
Q ss_pred hHHHHHHHHHHHHhhcCCcc----HHHHHHHHHHHhCCCCcchHHHHHHHH-HHHHHHHhhhcCcccCCCCCccHHHHHH
Q 002041 716 TIGAILEEIQGLYQQHQQPC----FLYLSSEVIKIFGSDPSCASYLHNLIE-ALFKRTTCLLTSIEEFTSRPDVADDCFL 790 (976)
Q Consensus 716 ~l~~l~~~l~~~~~~~~~~~----~L~l~~~li~~~~~~~~~~~~l~~~~~-~l~~~~~~~l~~~~~~~~~pD~~~~~f~ 790 (976)
.++.++.++. ++... ..+.++.+. ...+. ....++. .++.....++. ..++++...-..
T Consensus 336 ~l~~L~~LL~-----~~~~~i~~~a~~aL~nl~---~~~~~---~~~~v~~~g~i~~Lv~lL~-----~~~~~v~~~A~~ 399 (529)
T 3tpo_A 336 ALAVFPSLLT-----NPKTNIQKEATWTMSNIT---AGRQD---QIQQVVNHGLVPFLVGVLS-----KADFKTQKAAAW 399 (529)
T ss_dssp GGGGHHHHTT-----CSSHHHHHHHHHHHHHHH---TSCHH---HHHHHHHTTHHHHHHHHHH-----SSCHHHHHHHHH
T ss_pred cHHHHHHHHc-----CCCHHHHHHHHHHHHHHh---cccHH---HHHHHHhcCcHHHHHHHhc-----CCCHHHHHHHHH
Confidence 2233333221 22222 233333332 12211 1111111 12222333343 345667666555
Q ss_pred HHHHHHhhC-CC---cccCcCChHHHHHHHHHhcccCCchhHHHHHHHHHHhhccc
Q 002041 791 LASRCIRYC-PQ---LFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLA 842 (976)
Q Consensus 791 l~~~~~~~~-p~---~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~l~~~~ 842 (976)
.+..+.... +. .+.....++.++++ +...+......++..+..++..+
T Consensus 400 aL~nl~~~~~~~~~~~l~~~g~i~~L~~L----L~~~d~~i~~~~L~aL~nil~~~ 451 (529)
T 3tpo_A 400 AITNYTSGGTVEQIVYLVHCGIIEPLMNL----LSAKDTKIIQVILDAISNIFQAA 451 (529)
T ss_dssp HHHHHHHHSCHHHHHHHHHTTCHHHHHHG----GGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHCcCHHHHHHH----hcCCCHHHHHHHHHHHHHHHHHh
Confidence 555555432 21 12233445555444 66778888888888888888654
No 49
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=93.76 E-value=8.5 Score=42.22 Aligned_cols=268 Identities=10% Similarity=0.044 Sum_probs=128.9
Q ss_pred cHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCCh-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHH
Q 002041 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTA 583 (976)
Q Consensus 505 ~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~ 583 (976)
++...+-+...|.+|. .+.|+ +-..+++.++.-..+.+ .++..|.+.|-.||++ .++.-+.+++.++
T Consensus 41 ~~k~K~LaaQ~I~kff---k~FP~---l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Ql 108 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFF---KHFPE---LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQL 108 (507)
T ss_dssp CHHHHHHHHHHHHHHG---GGCGG---GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH---hhChh---hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHH
Confidence 4667777777777764 44444 55666766655554432 4777777777777765 3466666666666
Q ss_pred hhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhH-------------------------------HHHHHH
Q 002041 584 VNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLP-------------------------------VVTPLQ 632 (976)
Q Consensus 584 ~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p-------------------------------~~~~l~ 632 (976)
++.. +..+...+=.++..++..-|.......+.++..+ +...+.
T Consensus 109 Lqtd-----d~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ik 183 (507)
T 3u0r_A 109 LQTD-----DSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESK 183 (507)
T ss_dssp TTCC-----CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHH
T ss_pred Hhcc-----chHHHHHHHHHHHHHHhcChHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHH
Confidence 6531 2333334444444333333222222222222211 111222
Q ss_pred HHHhcCCCcccccCcchhhhHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHh---hc-CCHHHHHHHHHHHHHHHHH
Q 002041 633 EIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDI---RA-WDMRTMESLCRACKYAVRT 708 (976)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~---~~-~~~~v~e~~~~~~~~~~~~ 708 (976)
+++.... ......+-.+++.++....+ .-.+++.+++...... |. .|.+.+++...|+++++-.
T Consensus 184 K~L~DVT-----------~~EF~L~m~lL~~lkl~~t~-~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~ 251 (507)
T 3u0r_A 184 KVLEDVT-----------GEEFVLFMKILSGLKSLQTV-SGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPL 251 (507)
T ss_dssp HHTTSCC-----------HHHHHHHHHHHHTSGGGSSH-HHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGG
T ss_pred HHhcccc-----------HHHHHHHHHHHHhcccccCc-hHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 2221000 01122222333333321111 1125666666655432 33 6889999999999988765
Q ss_pred h--hhhhhhhHHHHHHHHHHHHhhcCCc-----cHHHHHHHHHHHhCC---CCcchHHHHHHHHHHHHHHHhhhcCcc-c
Q 002041 709 S--KRFMGITIGAILEEIQGLYQQHQQP-----CFLYLSSEVIKIFGS---DPSCASYLHNLIEALFKRTTCLLTSIE-E 777 (976)
Q Consensus 709 ~--~~~~~~~l~~l~~~l~~~~~~~~~~-----~~L~l~~~li~~~~~---~~~~~~~l~~~~~~l~~~~~~~l~~~~-~ 777 (976)
+ +.....|+.-+++.+.-.+..-+.+ -=|.++..+.+.-.. .+... +.+..+...-...+-... +
T Consensus 252 FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~----~~l~~iy~~L~~ymP~~p~~ 327 (507)
T 3u0r_A 252 FSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLE----TNLRKLFDKLLEYMPLPPEE 327 (507)
T ss_dssp CBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHH----HHHHHHHHHHHTTSCCCC--
T ss_pred hccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHH----HHHHHHHHHHHHHCCCCccc
Confidence 4 2333455555555555444443222 235555555553322 22222 233333332222221110 0
Q ss_pred -------CCCCCc----cHHHHHHHHHHHHhhCCCcccC
Q 002041 778 -------FTSRPD----VADDCFLLASRCIRYCPQLFIP 805 (976)
Q Consensus 778 -------~~~~pD----~~~~~f~l~~~~~~~~p~~~~~ 805 (976)
.++.|+ .+++++-.+++..+++|..+..
T Consensus 328 ~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~~l~e 366 (507)
T 3u0r_A 328 AENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPDFLTA 366 (507)
T ss_dssp ------------CCCHHHHHHHHHHHHHHHTTCTHHHHC
T ss_pred ccccccccccCcccchhHHHHHHHHHHHHhhhChhhhcc
Confidence 012354 3677777788888899987743
No 50
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=93.50 E-value=13 Score=42.42 Aligned_cols=220 Identities=12% Similarity=0.149 Sum_probs=112.5
Q ss_pred CCcchhhHHHHHHHHhhcccCcc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchH-HHHHH
Q 002041 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVLS 538 (976)
Q Consensus 465 ~~w~~~Ea~L~~l~~i~e~~~~~-----~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l-~~~l~ 538 (976)
.+-.-.+.++++++.+++.-... ....++.++..+.. .++.++..++.++|..+..-..... ..+ ..++.
T Consensus 263 ~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~--~~~~v~~~a~~aL~nl~~~~~~~~~--~i~~~g~l~ 338 (529)
T 3tpo_A 263 NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA--TELPIVTPALRAIGNIVTGTDEQTQ--KVIDAGALA 338 (529)
T ss_dssp SCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTC--SCHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTGGG
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcC--CChhHHHHHHHHHHHHHccchHHHH--HHhhcccHH
Confidence 34455677888888888653221 23456777776643 3678889999999876531110000 000 01222
Q ss_pred HHHcccCCCh-HHHHHHHHHHHHHHHHhhhhhhcCHH-HHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHH
Q 002041 539 ILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLD-GLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDA 616 (976)
Q Consensus 539 ~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~L~~~l~-~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~ 616 (976)
.+...+.+++ .++..|+.+|.+++...........+ .++..+..++.. -+.+.+.....+++.++..-.++..
T Consensus 339 ~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~-----~~~~v~~~A~~aL~nl~~~~~~~~~ 413 (529)
T 3tpo_A 339 VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK-----ADFKTQKAAAWAITNYTSGGTVEQI 413 (529)
T ss_dssp GHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHS-----SCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcC-----CCHHHHHHHHHHHHHHHcCCCHHHH
Confidence 3333444443 49999999999998643332211111 133333344443 2467788888899888876554443
Q ss_pred HHHHHH-hhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCC---cccHHHHHHHH--hHHHHHHHHhhcC
Q 002041 617 KKALEM-LCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH---PEAVADAIQRL--WPIFKAIFDIRAW 690 (976)
Q Consensus 617 ~~~l~~-ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~---~~~~~~~~~~~--~~~l~~ll~~~~~ 690 (976)
....+. .+.|+ -+++...+ .+.+...++.|..+++.... .+.+...+++. +..++.+. ...
T Consensus 414 ~~l~~~g~i~~L----~~LL~~~d-------~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq--~~~ 480 (529)
T 3tpo_A 414 VYLVHCGIIEPL----MNLLSAKD-------TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ--RHE 480 (529)
T ss_dssp HHHHHTTCHHHH----HHGGGCSC-------HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGG--GCS
T ss_pred HHHHHCcCHHHH----HHHhcCCC-------HHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHH--cCC
Confidence 322221 33343 34444321 22233456666666654321 22222222221 22222221 234
Q ss_pred CHHHHHHHHHHHHHHH
Q 002041 691 DMRTMESLCRACKYAV 706 (976)
Q Consensus 691 ~~~v~e~~~~~~~~~~ 706 (976)
+.+|.+.+..++.+-+
T Consensus 481 n~~i~~~A~~iie~yf 496 (529)
T 3tpo_A 481 NESVYKASLNLIEKYF 496 (529)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHC
Confidence 6778887777765433
No 51
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=93.39 E-value=13 Score=42.16 Aligned_cols=218 Identities=12% Similarity=0.142 Sum_probs=114.9
Q ss_pred CCCcchhhHHHHHHHHhhcccCcc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHH---
Q 002041 464 HNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILAS--- 535 (976)
Q Consensus 464 ~~~w~~~Ea~L~~l~~i~e~~~~~-----~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~--- 535 (976)
+.+..-.+.++++++.+++.-... +...++.+++.+.. .++.++..++.++|..+.. ++. .-..
T Consensus 243 ~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~al~aL~nl~~~---~~~---~~~~i~~ 314 (510)
T 3ul1_B 243 HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA--TELPIVTPALRAIGNIVTG---TDE---QTQKVID 314 (510)
T ss_dssp CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC--SCHHHHHHHHHHHHHHTTS---CHH---HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC--CChhhhhHHHHHHHHhhcC---CHH---HHHHHhh
Confidence 345566788899999888653221 23456777766653 3678899999999976431 111 1111
Q ss_pred --HHHHHHcccCCCh-HHHHHHHHHHHHHHHHhhhhhhcCH-HHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcC
Q 002041 536 --VLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYL-DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 611 (976)
Q Consensus 536 --~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~L~~~l-~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~ 611 (976)
++..+...+.+++ .++..|+.++.+++........... ..++..+..++.. -+.+.+.....+++.++..-
T Consensus 315 ~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~-----~~~~v~~~Aa~aL~Nl~~~~ 389 (510)
T 3ul1_B 315 AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK-----ADFKTQKEAAWAITNYTSGG 389 (510)
T ss_dssp TTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS-----SCHHHHHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHHccC
Confidence 2223334445543 5999999999999864332211111 1133334444443 24678888888998888765
Q ss_pred ChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCC---cccHHHHHHH--HhHHHHHHHH
Q 002041 612 PQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH---PEAVADAIQR--LWPIFKAIFD 686 (976)
Q Consensus 612 p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~---~~~~~~~~~~--~~~~l~~ll~ 686 (976)
..+.....++ ...+..|-+++...+ .+.....++.|..+++.... .+.+...+++ .+..++.+.
T Consensus 390 ~~~~~~~L~~---~g~i~~L~~LL~~~d-------~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq- 458 (510)
T 3ul1_B 390 TVEQIVYLVH---CGIIEPLMNLLSAKD-------TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ- 458 (510)
T ss_dssp CHHHHHHHHH---TTCHHHHHHGGGCSC-------HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGG-
T ss_pred CHHHHHHHHH---CCCHHHHHHHhcCCC-------HHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHH-
Confidence 5444332222 122333334444321 22233456666666654321 2223333332 222333321
Q ss_pred hhcCCHHHHHHHHHHHHHHH
Q 002041 687 IRAWDMRTMESLCRACKYAV 706 (976)
Q Consensus 687 ~~~~~~~v~e~~~~~~~~~~ 706 (976)
...+.+|.+.+..++.+-+
T Consensus 459 -~~~n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 459 -RHENESVYKASLNLIEKYF 477 (510)
T ss_dssp -GCSSHHHHHHHHHHHHHHC
T ss_pred -cCCCHHHHHHHHHHHHHHC
Confidence 2345677777766665443
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.16 E-value=4.1 Score=49.68 Aligned_cols=240 Identities=11% Similarity=0.162 Sum_probs=143.3
Q ss_pred hHHHHHHHHhhcccCcccccchHHHhhhcc----CCC-CcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccC
Q 002041 471 EAALFCIRAISTYVSVVEAEVMPQVMALLP----KLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMS 545 (976)
Q Consensus 471 Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~----~~~-~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~ 545 (976)
|+++.++.++++...... ..-|-++..++ ... -...||.++-..+-.+..-+. |. -+..+++.++.++.
T Consensus 70 ~~a~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~--~~---a~~~~~~~~~~~~~ 143 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSP-SVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVN--PV---AIKALLPHLTNAIV 143 (986)
T ss_dssp HHHHHHHHHHTCTTTCCT-TTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSC--GG---GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCC-CcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCC--HH---HHHHHHHHHHHHhc
Confidence 999999999997765432 12233333222 122 246788887777666554333 33 34566666666664
Q ss_pred CC-h-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 002041 546 TS-E-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEML 623 (976)
Q Consensus 546 ~~-~-~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l 623 (976)
.. + .....|...+.+++++++..+.-.++.++-.+...+- ....+......+++-.+...+.+.+.
T Consensus 144 ~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-----d~k~~v~~~~~~~~~~~~~~~~n~d~------- 211 (986)
T 2iw3_A 144 ETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMW-----DTKKEVKAAATAAMTKATETVDNKDI------- 211 (986)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTT-----CSSHHHHHHHHHHHHHHGGGCCCTTT-------
T ss_pred cccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcc-----cCcHHHHHHHHHHHHHHHhcCCCcch-------
Confidence 33 2 3788999999999999988898899999988888764 34566667667777666666666553
Q ss_pred hhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHH--HhhhcCCcccHHHHHHHHhHHHHHHHHhhcCCHHHHHHHHHH
Q 002041 624 CLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAY--IFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRA 701 (976)
Q Consensus 624 l~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~v~e~~~~~ 701 (976)
.|.+..|-+++.++. .+-..+..++. |+..+. . +.+.-+.|++..-+.. ....+....+-+
T Consensus 212 -~~~~~~~~~~~~~p~---------~~~~~~~~l~~~tfv~~v~--~---~~l~~~~p~l~r~l~~--~~~~~~r~~~~~ 274 (986)
T 2iw3_A 212 -ERFIPSLIQCIADPT---------EVPETVHLLGATTFVAEVT--P---ATLSIMVPLLSRGLNE--RETGIKRKSAVI 274 (986)
T ss_dssp -GGGHHHHHHHHHCTT---------HHHHHHHHHTTCCCCSCCC--H---HHHHHHHHHHHHHHTS--SSHHHHHHHHHH
T ss_pred -hhhHHHHHHHhcChh---------hhHHHHHHhhcCeeEeeec--c---hhHHHHHHHHHhhhcc--CcchhheeeEEE
Confidence 445555555555432 12223333331 222221 2 3345566777776643 233444444444
Q ss_pred HHHHHHHh--hhhhhhhHHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 002041 702 CKYAVRTS--KRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIK 745 (976)
Q Consensus 702 ~~~~~~~~--~~~~~~~l~~l~~~l~~~~~~~~~~~~L~l~~~li~ 745 (976)
+..+.+-. ...+.||+|.+++-+...+.....|..-.++.....
T Consensus 275 ~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~ 320 (986)
T 2iw3_A 275 IDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALK 320 (986)
T ss_dssp HHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHH
T ss_pred EcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHH
Confidence 44444322 235678999999888888887777765544443333
No 53
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=93.06 E-value=1.5 Score=44.35 Aligned_cols=218 Identities=13% Similarity=0.111 Sum_probs=118.6
Q ss_pred CCcchhhHHHHHHHHhhcccCcc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchH-HHHHH
Q 002041 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVLS 538 (976)
Q Consensus 465 ~~w~~~Ea~L~~l~~i~e~~~~~-----~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l-~~~l~ 538 (976)
.+....+.++++++.++..-+.. +...++.+++.+.. .++.++..++++++..+..-..+.. ... ...++
T Consensus 14 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~i~ 89 (252)
T 4hxt_A 14 TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS--TDSEVQKEAARALANIASGPDEAIK--AIVDAGGVE 89 (252)
T ss_dssp SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcCChHHHH--HHHHCCCHH
Confidence 34666778888888887654322 12456666666653 3589999999999988642111000 000 02344
Q ss_pred HHHcccCCC-hHHHHHHHHHHHHHHHH---hhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChH
Q 002041 539 ILTSGMSTS-EDTAAAAALAFRHICDD---CRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQV 614 (976)
Q Consensus 539 ~l~~~l~~~-~~v~~~A~~al~~l~~~---~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~ 614 (976)
.+...+.++ ..++..|+.+|.+++.. .+..+.. ...+..+.+++.. -+.+.+.....+++.+...-+ +
T Consensus 90 ~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~~l~~-----~~~~~~~~a~~~L~~l~~~~~-~ 161 (252)
T 4hxt_A 90 VLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD--AGGVEVLVKLLTS-----TDSEVQKEAARALANIASGPD-E 161 (252)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHTTC-----SCHHHHHHHHHHHHHHTTSCH-H
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHHcCCH-H
Confidence 444555443 35999999999999953 3333321 1233344444432 246678888888887766532 2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCCcccHHHHH-HHHhHHHHHHHHhhcCCHH
Q 002041 615 DAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI-QRLWPIFKAIFDIRAWDMR 693 (976)
Q Consensus 615 ~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~~~ 693 (976)
....... ...+..+.+++.... ......++..++.+... .++....+. ...+|.+..++. ..+++
T Consensus 162 ~~~~~~~---~~~i~~L~~ll~~~~-------~~v~~~a~~~L~~l~~~--~~~~~~~l~~~~~i~~L~~ll~--~~~~~ 227 (252)
T 4hxt_A 162 AIKAIVD---AGGVEVLVKLLTSTD-------SEVQKEAARALANIASG--PTSAIKAIVDAGGVEVLQKLLT--STDSE 227 (252)
T ss_dssp HHHHHHH---TTHHHHHHHHTTCSC-------HHHHHHHHHHHHHHTTS--BHHHHHHHHHTTHHHHHHHGGG--CSCHH
T ss_pred HHHHHHH---CcCHHHHHHHHCCCC-------HHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHC--CCcHH
Confidence 2222221 334444555554321 11122345555555431 121111111 235555555554 35678
Q ss_pred HHHHHHHHHHHHHHH
Q 002041 694 TMESLCRACKYAVRT 708 (976)
Q Consensus 694 v~e~~~~~~~~~~~~ 708 (976)
+.+.++.++..+...
T Consensus 228 v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 228 VQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC
Confidence 889999988877654
No 54
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=92.42 E-value=9.8 Score=39.64 Aligned_cols=151 Identities=12% Similarity=0.108 Sum_probs=83.4
Q ss_pred cchHHHhh-hccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCc------chHHHHHHHHHcccCCChHHHHHHHHHHHHHH
Q 002041 490 EVMPQVMA-LLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDP------SILASVLSILTSGMSTSEDTAAAAALAFRHIC 562 (976)
Q Consensus 490 ~~l~~l~~-~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~------~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~ 562 (976)
..++.++. .|.. +++.+|..+++++|..+. .+|... .-+++++..+... .+..++..|+.||..+|
T Consensus 81 G~l~~Lv~~lL~s--~~~~vr~~Aa~~Lg~ia~---~n~~~~~~vv~~g~l~~Ll~LL~~~--~~~~v~~~A~~ALsnl~ 153 (296)
T 1xqr_A 81 SGMHLLVGRYLEA--GAAGLRWRAAQLIGTCSQ---NVAAIQEQVLGLGALRKLLRLLDRD--ACDTVRVKALFAISCLV 153 (296)
T ss_dssp THHHHHHHTTTTC--SSHHHHHHHHHHHHHHHT---TCHHHHHHHHHTTHHHHHHHHHHHC--SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcC--CCHHHHHHHHHHHHHHHh---CCHHHHHHHHHCCCHHHHHHHHccC--CCHHHHHHHHHHHHHHH
Confidence 34666776 5432 378999999999998753 122100 1455665555331 12349999999999999
Q ss_pred HHhhhhhhcCHH-HHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCc
Q 002041 563 DDCRKKLCGYLD-GLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEI 641 (976)
Q Consensus 563 ~~~~~~L~~~l~-~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~ 641 (976)
.........+.. ..+..+..++.. -+...+....-+++.+... .++......+ ...+..+-.++....
T Consensus 154 ~~~~~~~~~~~~~ggi~~L~~lL~~-----~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~---~g~i~~Lv~LL~~~d-- 222 (296)
T 1xqr_A 154 REQEAGLLQFLRLDGFSVLMRAMQQ-----QVQKLKVKSAFLLQNLLVG-HPEHKGTLCS---MGMVQQLVALVRTEH-- 222 (296)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHS-----SCHHHHHHHHHHHHHHHHH-CGGGHHHHHH---TTHHHHHHHHHTSCC--
T ss_pred cCCcHHHHHHHHCCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHHhC-ChHHHHHHHH---cCCHHHHHHHHcCCC--
Confidence 754332211111 233344444443 2567888889999988877 3333322222 123333344454332
Q ss_pred ccccCcchhhhHHHHHHHHhhh
Q 002041 642 LQKKHPRDLTVHIDRFAYIFRY 663 (976)
Q Consensus 642 ~~~~~~~~~~~~l~~l~~~~~~ 663 (976)
......++..++.++..
T Consensus 223 -----~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 223 -----SPFHEHVLGALCSLVTD 239 (296)
T ss_dssp -----STHHHHHHHHHHHHHTT
T ss_pred -----hhHHHHHHHHHHHHHhC
Confidence 12223456677766654
No 55
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=92.28 E-value=1.4 Score=45.04 Aligned_cols=136 Identities=10% Similarity=0.097 Sum_probs=88.2
Q ss_pred CCcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHhhHH-HHHHHHHHHHhhccCCCCCCCCChhhhHHhH
Q 002041 328 PEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRS-AYESLVSLVSFRVQYPQDYQDLSLEDLKEFK 406 (976)
Q Consensus 328 ~~~~vs~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ll~~l~~k~~~p~d~~~~~~d~~~~f~ 406 (976)
.+..+...++++...+.+.+... .|. +.+ -...+++.++.|+-=+ .+
T Consensus 99 ~N~~v~~~~L~~L~~l~~~l~~~-~y~------------------~~~~ea~~~lP~LveKlGd~----------k~--- 146 (266)
T 2of3_A 99 TNPAALIKVLELCKVIVELIRDT-ETP------------------MSQEEVSAFVPYLLLKTGEA----------KD--- 146 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHT-TCC------------------CCHHHHHHHHHHHHHGGGCS----------SH---
T ss_pred CCHHHHHHHHHHHHHHHHHHHhc-ccc------------------chHHHHHHHHHHHHHHhCCC----------hH---
Confidence 46678888888887777766432 121 111 1234566677777221 12
Q ss_pred hhhhcccccCCccchhhhhhhhhhhHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCc
Q 002041 407 HTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSV 486 (976)
Q Consensus 407 ~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~ 486 (976)
.+|.. +.+++..++.+.++..++.++.+.+. +.+|+.+|.++..+.++-+....
T Consensus 147 ~vR~~-----------------~r~il~~l~~v~~~~~v~~~l~~g~k---------sKN~R~R~e~l~~l~~li~~~G~ 200 (266)
T 2of3_A 147 NMRTS-----------------VRDIVNVLSDVVGPLKMTPMLLDALK---------SKNARQRSECLLVIEYYITNAGI 200 (266)
T ss_dssp HHHHH-----------------HHHHHHHHHHHHCHHHHHHHHHHGGG---------CSCHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHH-----------------HHHHHHHHHHHCCHHHHHHHHHHHHc---------cCCHHHHHHHHHHHHHHHHhcCC
Confidence 35666 67777777777777766666554331 57899999999999988766544
Q ss_pred ccccch---HHHhhhccCCCCcHHHHHHHHHHHHhcHHHH
Q 002041 487 VEAEVM---PQVMALLPKLPQQPQLLQTVCLTIGAYSKWF 523 (976)
Q Consensus 487 ~~~~~l---~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~ 523 (976)
.....+ +.+...+.. .++.||.+++.++.......
T Consensus 201 ~~~~~l~~~~~ia~ll~D--~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 201 SPLKSLSVEKTVAPFVGD--KDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp GGGGGGCHHHHHGGGGGC--SSHHHHHHHHHHHHHHHHHH
T ss_pred CccccccchHHHHHHHcC--CCHHHHHHHHHHHHHHHHHh
Confidence 334455 666655553 37899999999988665443
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.00 E-value=0.57 Score=57.17 Aligned_cols=208 Identities=18% Similarity=0.253 Sum_probs=129.5
Q ss_pred hhhHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcccccchHHHhhhccCCCCcHHH
Q 002041 429 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQL 508 (976)
Q Consensus 429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~~~~~~~~v 508 (976)
+......++..+.+..+ ..++..|.+.+.. ...||...++|-++..+++..+.
T Consensus 115 a~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~----~~kw~~k~~~l~~~~~~~~~~~~---------------------- 167 (986)
T 2iw3_A 115 ASETLISIVNAVNPVAI-KALLPHLTNAIVE----TNKWQEKIAILAAFSAMVDAAKD---------------------- 167 (986)
T ss_dssp HHHHHHHHHHHSCGGGH-HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHSHH----------------------
T ss_pred HHHHHHHHHHhCCHHHH-HHHHHHHHHHhcc----ccchHHHHHHHHHHHHHHHHhHH----------------------
Confidence 44455556666665433 5555555555532 34699999999999988874311
Q ss_pred HHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCCh-HHHHHHHHHHHHHHHHhh-hhhhcCHHHHHHHHHHHhhc
Q 002041 509 LQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCR-KKLCGYLDGLYNVYRTAVNG 586 (976)
Q Consensus 509 ~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~-~~L~~~l~~ll~~~~~~~~~ 586 (976)
.+. ..+|.+++.+..++.+.+ +|..+|-.++.++|.-.. ..+.|+++.+++.+.+-
T Consensus 168 -------------~~~------~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p--- 225 (986)
T 2iw3_A 168 -------------QVA------LRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADP--- 225 (986)
T ss_dssp -------------HHH------HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCT---
T ss_pred -------------HHH------HhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcCh---
Confidence 111 157888888888888754 599999999999998655 46889999998776431
Q ss_pred cCCCCCCHHhHHHHHHHHHHHHhc-CChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcC
Q 002041 587 EGSLKVSAEDSLHLVEALSMVITE-LPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN 665 (976)
Q Consensus 587 ~~~~~l~~~~~~~l~eai~~vi~~-~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 665 (976)
+. +-|+|-.+.+. +=.+-..+.+ .++.|++.+ .+..... ...|..+..++.|..++ .
T Consensus 226 --------~~---~~~~~~~l~~~tfv~~v~~~~l-~~~~p~l~r---~l~~~~~----~~~r~~~~~~~n~~~lv---~ 283 (986)
T 2iw3_A 226 --------TE---VPETVHLLGATTFVAEVTPATL-SIMVPLLSR---GLNERET----GIKRKSAVIIDNMCKLV---E 283 (986)
T ss_dssp --------TH---HHHHHHHHTTCCCCSCCCHHHH-HHHHHHHHH---HHTSSSH----HHHHHHHHHHHHHHTTC---C
T ss_pred --------hh---hHHHHHHhhcCeeEeeecchhH-HHHHHHHHh---hhccCcc----hhheeeEEEEcchhhhc---C
Confidence 11 23333222222 1111112333 467777543 3332211 12244445666666554 4
Q ss_pred CcccHHHHHHHHhHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 002041 666 HPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRT 708 (976)
Q Consensus 666 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~v~e~~~~~~~~~~~~ 708 (976)
.|..+.+++.+++|-+..+.+. ..+++++|.+-+++..+.+.
T Consensus 284 ~~~~~~~f~~~l~p~~~~~~~~-~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 284 DPQVIAPFLGKLLPGLKSNFAT-IADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp CHHHHHHHHTTTHHHHHHHTTT-CCSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHhhhhhhhhhHHHHHhhc-cCCHHHHHHHHHHHHHHHHh
Confidence 6777888888888888887765 45788888877777765554
No 57
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=90.91 E-value=5.3 Score=40.02 Aligned_cols=221 Identities=16% Similarity=0.122 Sum_probs=129.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh----------hHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCCCC
Q 002041 7 VKEALNALYHHPDDAVRMQADRWLQDFQHTI----------DAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELP 76 (976)
Q Consensus 7 v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~----------~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~l~ 76 (976)
|...+..+ .++|++.|.+|-..|..+-... ++......+|.+ .+..++..|+..|.+.... +
T Consensus 4 i~~L~~~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~-----~ 75 (252)
T 4hxt_A 4 VEKLVKLL-TSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS--TDSEVQKEAARALANIASG-----P 75 (252)
T ss_dssp HHHHHHHT-TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTS-----C
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcC-----C
Confidence 33444444 5667889999999998886544 356667777765 4578999999999987653 1
Q ss_pred hhhHHH-HHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhccccccCC---ccchHHHHHhcCCCC-CcHHHHHHHHhh
Q 002041 77 SEAVRG-LQDSLNTLLKKFH-KGPPKVRTQISIAVAALAVHISAEDWGG---GGIVNWLRDEMNSHP-EFVPGFLELLTV 150 (976)
Q Consensus 77 ~~~~~~-lr~~Ll~~l~~~~-~~~~~v~~kL~~~La~l~~~~~~~~W~~---~~~~~~l~~~l~~~~-~~~~~~L~~L~~ 150 (976)
++.+.. ++...+..+...- .++..++...+.+|..+...... .... .+.++.+++.+.+.. ......+..|..
T Consensus 76 ~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~ 154 (252)
T 4hxt_A 76 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE-AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALAN 154 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 333332 2333455555432 35677888888888888743211 1100 025677777776433 334456666666
Q ss_pred cccccccccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhh--hHHHHHHHHHHHHhhhccCCCCCcccccchhHHHHHh
Q 002041 151 LPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHI--NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALS 228 (976)
Q Consensus 151 l~EE~~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~--~~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~~~~ 228 (976)
+...- +..+..+.+ ..++..+...+.+ +.++..++.++......... -...+.....++.+.+
T Consensus 155 l~~~~--------~~~~~~~~~------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~~~i~~L~~ 219 (252)
T 4hxt_A 155 IASGP--------DEAIKAIVD------AGGVEVLVKLLTSTDSEVQKEAARALANIASGPTS-AIKAIVDAGGVEVLQK 219 (252)
T ss_dssp HTTSC--------HHHHHHHHH------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHH-HHHHHHHTTHHHHHHH
T ss_pred HHcCC--------HHHHHHHHH------CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHH
Confidence 55421 112111111 1233444444444 36788888888776542100 0011234566777777
Q ss_pred cCCC--cchHHHHHHHHHHHhhhhc
Q 002041 229 SLHS--EILSEASVNVISELIHYSA 251 (976)
Q Consensus 229 ~L~~--~~~~~~a~~~l~~ii~~~~ 251 (976)
.+.+ +++...|+.+|..+.....
T Consensus 220 ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 220 LLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred HHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 7764 4678889999999886554
No 58
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=90.56 E-value=0.89 Score=44.72 Aligned_cols=138 Identities=15% Similarity=0.173 Sum_probs=82.2
Q ss_pred CCCcchhhHHHHHHHHhhcccCcc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchH-HHHH
Q 002041 464 HNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVL 537 (976)
Q Consensus 464 ~~~w~~~Ea~L~~l~~i~e~~~~~-----~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l-~~~l 537 (976)
+.++.-.+.++++|+.++..-+.. +...++.+++.+.. .++.++..++++++..+..-..+.. ..+ ...+
T Consensus 23 s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~--~i~~~g~i 98 (210)
T 4db6_A 23 SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQ--AVIDAGAL 98 (210)
T ss_dssp CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTCH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCcHHHH--HHHHCCCH
Confidence 456788899999999998543222 12456677766653 2789999999999987631111000 000 0123
Q ss_pred HHHHcccCCCh-HHHHHHHHHHHHHHHHhhhhhhcCH-HHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhc
Q 002041 538 SILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYL-DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (976)
Q Consensus 538 ~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~L~~~l-~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (976)
+.+...+.+++ .++..|+.++.+++..........+ ...+..+.+++.. -+.+.+...+.+++.+...
T Consensus 99 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 99 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-----PNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-----SCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC-----CCHHHHHHHHHHHHHHHcC
Confidence 34444444442 4999999999999964332211100 1233444444442 2467788888888888775
No 59
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=90.56 E-value=17 Score=37.21 Aligned_cols=214 Identities=12% Similarity=0.039 Sum_probs=119.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHH
Q 002041 7 VKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDS 86 (976)
Q Consensus 7 v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~~~lr~~ 86 (976)
+...+..+ .++|+..|..|-..|.++. ++++......+|.+ .+..+|..|+..|... .. +.+....+...
T Consensus 25 i~~L~~~L-~~~~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~d--~~~~vR~~A~~aL~~l-~~-----~~~~~~~l~~~ 94 (280)
T 1oyz_A 25 DDELFRLL-DDHNSLKRISSARVLQLRG-GQDAVRLAIEFCSD--KNYIRRDIGAFILGQI-KI-----CKKCEDNVFNI 94 (280)
T ss_dssp HHHHHHHT-TCSSHHHHHHHHHHHHHHC-CHHHHHHHHHHHTC--SSHHHHHHHHHHHHHS-CC-----CTTTHHHHHHH
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHccC-CchHHHHHHHHHcC--CCHHHHHHHHHHHHHh-cc-----ccccchHHHHH
Confidence 33444444 6789999999999999886 78899999999975 5678999999998643 11 11222222233
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CcHHHHHHHHhhcccc-cccc---cc-
Q 002041 87 LNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEE-VFNY---KI- 160 (976)
Q Consensus 87 Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l~~~~-~~~~~~L~~L~~l~EE-~~~~---~~- 160 (976)
|.+.+.+ .....||...+.+|+.+....+. ..+. .++.+...++... .........|..+..+ .... .+
T Consensus 95 L~~~~~~--d~~~~vr~~a~~aL~~l~~~~~~-~~~~--~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~ 169 (280)
T 1oyz_A 95 LNNMALN--DKSACVRATAIESTAQRCKKNPI-YSPK--IVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLK 169 (280)
T ss_dssp HHHHHHH--CSCHHHHHHHHHHHHHHHHHCGG-GHHH--HHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHT
T ss_pred HHHHHhc--CCCHHHHHHHHHHHHHHhccCCc-ccHH--HHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHc
Confidence 3222222 35678999899999887643321 1222 4555666554322 2223334444433321 0000 00
Q ss_pred cCChhHHHHHHHHHHHh---HHHHHHHHHHhhhhh--HHHHHHHHHHHHhhhccCCCCCcccccchhHHHHHhcCCCcch
Q 002041 161 AARPERRRQFEKELTSQ---MEVALSTLTACLHIN--ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEIL 235 (976)
Q Consensus 161 ~~~~~~r~~l~~~l~~~---~~~vl~~l~~~l~~~--~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~~~~~L~~~~~ 235 (976)
.-...-|...-..+... .+.++..+...+.++ .++..++.++...- ....++.+...|.+++.
T Consensus 170 d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~------------~~~~~~~L~~~l~d~~v 237 (280)
T 1oyz_A 170 DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK------------DKRVLSVLCDELKKNTV 237 (280)
T ss_dssp CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT------------CGGGHHHHHHHHTSSSC
T ss_pred CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC------------CHhhHHHHHHHhcCccH
Confidence 00122233322333222 355666666666553 57777777765431 12456667777777778
Q ss_pred HHHHHHHHHHHh
Q 002041 236 SEASVNVISELI 247 (976)
Q Consensus 236 ~~~a~~~l~~ii 247 (976)
+..|+.++..+-
T Consensus 238 r~~a~~aL~~i~ 249 (280)
T 1oyz_A 238 YDDIIEAAGELG 249 (280)
T ss_dssp CHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 888877776653
No 60
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=90.11 E-value=3.4 Score=41.68 Aligned_cols=217 Identities=12% Similarity=0.081 Sum_probs=111.8
Q ss_pred CCCcchhhHHHHHHHHhhcccCcc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchH-HHHH
Q 002041 464 HNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVL 537 (976)
Q Consensus 464 ~~~w~~~Ea~L~~l~~i~e~~~~~-----~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l-~~~l 537 (976)
+.+......++.+++.+...-.+. +...++.+++.+.. .++.++..++++++..+.--..+.. ..+ ...+
T Consensus 23 s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~--~i~~~g~i 98 (252)
T 4db8_A 23 SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQ--AVIDAGAL 98 (252)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC--SCHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCHHHHH--HHHHcCCH
Confidence 345666778888885543321111 13456677776653 2588999999999988642111100 011 1144
Q ss_pred HHHHcccCCC-hHHHHHHHHHHHHHHHHhhhhhhcC-HHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHH
Q 002041 538 SILTSGMSTS-EDTAAAAALAFRHICDDCRKKLCGY-LDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVD 615 (976)
Q Consensus 538 ~~l~~~l~~~-~~v~~~A~~al~~l~~~~~~~L~~~-l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~ 615 (976)
+.+...+.++ ..++..|+.+|.+++.......... -...+..+.+++.. -+.+.+.....+++.+...-+ +.
T Consensus 99 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~-~~ 172 (252)
T 4db8_A 99 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-----PNEQILQEALWALSNIASGGN-EQ 172 (252)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC-----SCHHHHHHHHHHHHHHTTSCH-HH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhC-----CCHHHHHHHHHHHHHHHcCCh-HH
Confidence 4555555544 2499999999999987543321100 11233444445543 245678888888887775532 22
Q ss_pred HHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCCcccHHHHHH-HHhHHHHHHHHhhcCCHHH
Q 002041 616 AKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQ-RLWPIFKAIFDIRAWDMRT 694 (976)
Q Consensus 616 ~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~~~~~~~~v 694 (976)
...... ...+..+-+++.... ......++..++.+... .++....+.+ ..+|.+..++.. .++++
T Consensus 173 ~~~~~~---~~~i~~L~~ll~~~~-------~~v~~~a~~~L~~l~~~--~~~~~~~~~~~g~i~~L~~ll~~--~~~~v 238 (252)
T 4db8_A 173 IQAVID---AGALPALVQLLSSPN-------EQILQEALWALSNIASG--GNEQKQAVKEAGALEKLEQLQSH--ENEKI 238 (252)
T ss_dssp HHHHHH---TTCHHHHHHGGGCSS-------HHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHTTTTC--SSSHH
T ss_pred HHHHHH---CCCHHHHHHHHCCCC-------HHHHHHHHHHHHHHhcC--CHHHHHHHHHCCcHHHHHHHhCC--CCHHH
Confidence 222111 233334444444321 11122345556655532 2222222222 345555554433 45678
Q ss_pred HHHHHHHHHH
Q 002041 695 MESLCRACKY 704 (976)
Q Consensus 695 ~e~~~~~~~~ 704 (976)
.+.++.++..
T Consensus 239 ~~~A~~~L~~ 248 (252)
T 4db8_A 239 QKEAQEALEK 248 (252)
T ss_dssp HHTHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 8888877764
No 61
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=89.99 E-value=34 Score=39.95 Aligned_cols=135 Identities=14% Similarity=0.094 Sum_probs=82.9
Q ss_pred CcchhhHHHHHHHHhhcccCccc-----ccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHH
Q 002041 466 EWRPAEAALFCIRAISTYVSVVE-----AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 540 (976)
Q Consensus 466 ~w~~~Ea~L~~l~~i~e~~~~~~-----~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l 540 (976)
.....+.++.++..++.. +... ...++.++..+.. .++.++..++++++..+..-... . ....+++.+
T Consensus 196 ~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll~~--~~~~~~~~a~~~L~nL~~~~~~~-~---~~~~~i~~L 268 (644)
T 2z6h_A 196 YEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTD--PSQRLVQNCLWTLRNLSDAATKQ-E---GMEGLLGTL 268 (644)
T ss_dssp CHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTTTC--SCHHHHHHHHHHHHHHGGGCTTC-C---SCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhc--CCHHHHHHHHHHHHHHhhcchhh-h---hhhhHHHHH
Confidence 345567888888888752 2211 2345555555432 26889999999999987543221 1 345666666
Q ss_pred HcccCCC-hHHHHHHHHHHHHHHHH---hhhhhh--cCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChH
Q 002041 541 TSGMSTS-EDTAAAAALAFRHICDD---CRKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQV 614 (976)
Q Consensus 541 ~~~l~~~-~~v~~~A~~al~~l~~~---~~~~L~--~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~ 614 (976)
.+.+.++ ..++..|+.+|.+++.. .+..+. .-++.++..+...- -..+.+...+.+++.+...-+.+
T Consensus 269 v~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~-------~~~~v~~~a~~aL~nL~~~~~~~ 341 (644)
T 2z6h_A 269 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG-------DREDITEPAICALRHLTSRHQEA 341 (644)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHHTSSSTTH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccC-------CcHHHHHHHHHHHHHHhcCCchH
Confidence 6666544 25999999999999863 233333 23444554443311 12467788888888887654543
No 62
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=89.97 E-value=5 Score=41.87 Aligned_cols=147 Identities=10% Similarity=0.146 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHhhhccCCCCCccc---ccchhHHHHHh-cC-CCcchHH-HHHHHHHHHhhhhccCCCCCccCchhHHH
Q 002041 193 ELKEQVLEAFASWLRLKHRIPGSVL---ASHPLVLTALS-SL-HSEILSE-ASVNVISELIHYSAAGSSGGATVNMPLIQ 266 (976)
Q Consensus 193 ~~~~~~l~~~~sWi~~~~~i~~~~l---~~~~l~~~~~~-~L-~~~~~~~-~a~~~l~~ii~~~~~~~~~~~~~~~~~i~ 266 (976)
.+++.+|+-+..|+.-.. ....+ ...|+++.++. .- +.|+.++ ..+.++..++++-... -.+.+-
T Consensus 44 ~vKkeiLkLiet~i~~~~--d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~-------i~~~vp 114 (321)
T 1w9c_A 44 TVKRETLKLISGWVSRSN--DPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGH-------ITAEIP 114 (321)
T ss_dssp HHHHHHHHHHHHHHTTCS--CHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGG-------GGGGHH
T ss_pred HHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHH-------hhhhHH
Confidence 366778888888887431 11111 12344443331 11 2355553 4677888888765421 112223
Q ss_pred HHHHHHHh-hHHHhhhc-cCCHHHHHHHHHHHHHHhhHHHHHHhcCC-chhHHHHHHHHhhccCCCcchhhhhHHHHHHH
Q 002041 267 VIVPQIMS-LKAHLTDS-SKDEEDVKAIARLFADMGDSYVELIATGS-DESMLIVHALLEVASHPEYDIASMTFNFWHSL 343 (976)
Q Consensus 267 ~l~~~v~~-l~~~~~~~-~~d~e~~~~~~~l~~~~~~~~~~~l~~~~-~~~~~ll~~lL~~~~~~~~~vs~~~l~fW~~l 343 (976)
.|+..+.. ..+++... .+-.|...++.+++-++.......+..-| +.+..+++.++....|++++|++..+.-...+
T Consensus 115 ~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~l 194 (321)
T 1w9c_A 115 QIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTL 194 (321)
T ss_dssp HHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHH
Confidence 33333221 23333322 23357777888999888877666555544 56788899999999999999999999987777
Q ss_pred HHHhc
Q 002041 344 QVILT 348 (976)
Q Consensus 344 ~~~l~ 348 (976)
.+.+.
T Consensus 195 l~n~~ 199 (321)
T 1w9c_A 195 LQNVA 199 (321)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77663
No 63
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=88.38 E-value=1.2 Score=46.76 Aligned_cols=134 Identities=13% Similarity=0.146 Sum_probs=81.7
Q ss_pred CCcchhhHHHHHHHHhhcccCcc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCC---cchHHHH
Q 002041 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSD---PSILASV 536 (976)
Q Consensus 465 ~~w~~~Ea~L~~l~~i~e~~~~~-----~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~---~~~l~~~ 536 (976)
.+-.-.+.++++++.++..-+.. +...++.++..+..-+ .+.++..++++|+..+.-....++. ...++.+
T Consensus 94 ~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~-~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L 172 (296)
T 1xqr_A 94 GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDA-CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVL 172 (296)
T ss_dssp SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHH
Confidence 44566789999999888643222 1245677777765322 5789999999999875311110000 0134444
Q ss_pred HHHHHcccCCChHHHHHHHHHHHHHHHHhh---hhhh--cCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcC
Q 002041 537 LSILTSGMSTSEDTAAAAALAFRHICDDCR---KKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 611 (976)
Q Consensus 537 l~~l~~~l~~~~~v~~~A~~al~~l~~~~~---~~L~--~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~ 611 (976)
+..+.. .+ .+++..|+.++.+++.... ..+. +.++.++ .++.. -+.+.+.....+++.++...
T Consensus 173 ~~lL~~--~d-~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv----~LL~~-----~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 173 MRAMQQ--QV-QKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV----ALVRT-----EHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHHS--SC-HHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHH----HHHTS-----CCSTHHHHHHHHHHHHHTTC
T ss_pred HHHHcC--CC-HHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHH----HHHcC-----CChhHHHHHHHHHHHHHhCC
Confidence 444422 12 3599999999999998632 2232 3344444 44443 24567899999999998873
No 64
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=86.21 E-value=5.6 Score=38.48 Aligned_cols=109 Identities=14% Similarity=0.158 Sum_probs=71.3
Q ss_pred CCCcchhhHHHHHHHHhhcccCcccccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcc
Q 002041 464 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 543 (976)
Q Consensus 464 ~~~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~ 543 (976)
+.+|.-...++.+++.++. ...++.++..+.. .++.+|..+++.+|++. +++ .++.++. .
T Consensus 56 ~~~~~vr~~a~~~L~~~~~------~~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~-----~~~---~~~~L~~----~ 115 (201)
T 3ltj_A 56 DEDAWVRRAAADALGQIGD------ERAVEPLIKALKD--EDGWVRQSAAVALGQIG-----DER---AVEPLIK----A 115 (201)
T ss_dssp CSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTC--SSHHHHHHHHHHHHHHC-----CGG---GHHHHHH----H
T ss_pred CCCHHHHHHHHHHHHhhCC------HHHHHHHHHHHcC--CCHHHHHHHHHHHHHhC-----cHH---HHHHHHH----H
Confidence 4567778888888887763 2456777766643 37899999999999864 232 4444443 4
Q ss_pred cCCCh-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHH
Q 002041 544 MSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 607 (976)
Q Consensus 544 l~~~~-~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~v 607 (976)
+.++. .|+..|+.++.++... ..+..+..++.. -+...|...+++++.+
T Consensus 116 l~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d-----~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 116 LKDEDWFVRIAAAFALGEIGDE----------RAVEPLIKALKD-----EDGWVRQSAADALGEI 165 (201)
T ss_dssp TTCSSHHHHHHHHHHHHHHTCG----------GGHHHHHHHTTC-----SSHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhCCH----------HHHHHHHHHHcC-----CCHHHHHHHHHHHHHh
Confidence 45543 4999999999887431 122333444432 2467788888888876
No 65
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=86.11 E-value=58 Score=38.00 Aligned_cols=256 Identities=12% Similarity=0.073 Sum_probs=134.3
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhcCh----------hHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCCCChhhHH
Q 002041 12 NALYHHPDDAVRMQADRWLQDFQHTI----------DAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVR 81 (976)
Q Consensus 12 ~~ly~~~d~~~r~~A~~~L~~~q~s~----------~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~~ 81 (976)
..+....|+..|..|-..|.++-..+ ++......+|.+ +.+.+++..|+.+|++.... .+.+.
T Consensus 20 v~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~-~~~~~~~~~A~~~L~~Ls~~------~~~~~ 92 (644)
T 2z6h_A 20 TKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTAGTLHNLSHH------REGLL 92 (644)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHTTS------HHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcC------hhhHH
Confidence 33446778999999999998876643 445555667764 45788999999999954321 22232
Q ss_pred HHH-HHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhcccc--ccCCccchHHHHHhcCCCCC-cHHHHHHHHhhcccccc
Q 002041 82 GLQ-DSLNTLLKKFH-KGPPKVRTQISIAVAALAVHISAE--DWGGGGIVNWLRDEMNSHPE-FVPGFLELLTVLPEEVF 156 (976)
Q Consensus 82 ~lr-~~Ll~~l~~~~-~~~~~v~~kL~~~La~l~~~~~~~--~W~~~~~~~~l~~~l~~~~~-~~~~~L~~L~~l~EE~~ 156 (976)
.+. ...+..|.... .+...++...+.+|..++...... ..-+.+.++.+++.+.+... .....+..|..+...
T Consensus 93 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-- 170 (644)
T 2z6h_A 93 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG-- 170 (644)
T ss_dssp HHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT--
T ss_pred HHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc--
Confidence 222 22444444432 345678888888898887653210 00011267777887765432 223344555555431
Q ss_pred cccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhccCCCCCcccccchhHHHHHhcCCC--cc
Q 002041 157 NYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHS--EI 234 (976)
Q Consensus 157 ~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~~~~~L~~--~~ 234 (976)
.++.+..+.+ ....+.++.++... ..+.+...++.++..-.... -....+.....++.+...+.+ ++
T Consensus 171 ------~~~~~~~i~~--~g~v~~Lv~lL~~~-~~~~~~~~a~~~L~nLs~~~--~~~~~l~~~g~l~~L~~ll~~~~~~ 239 (644)
T 2z6h_A 171 ------NQESKLIILA--SGGPQALVNIMRTY-TYEKLLWTTSRVLKVLSVCS--SNKPAIVEAGGMQALGLHLTDPSQR 239 (644)
T ss_dssp ------CHHHHHHHHH--TTHHHHHHHHHTTC-CCHHHHHHHHHHHHHHTTCT--THHHHHHHTTHHHHHHTTTTCSCHH
T ss_pred ------CcHHHHHHHH--cCChHHHHHHHHcC-ChHHHHHHHHHHHHHHhcCc--ccHHHHHHCCCHHHHHHHHhcCCHH
Confidence 1111111111 11233344443322 11234455555554432210 001123344567777777765 46
Q ss_pred hHHHHHHHHHHHhhhhccCCCCCccCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhh
Q 002041 235 LSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGD 301 (976)
Q Consensus 235 ~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~v~~l~~~~~~~~~d~e~~~~~~~l~~~~~~ 301 (976)
+...++.+|..+....... ..+..+++.+..+ + ...|.+.....+..+..++.
T Consensus 240 ~~~~a~~~L~nL~~~~~~~---------~~~~~~i~~Lv~l---L--~~~d~~v~~~a~~aL~~L~~ 292 (644)
T 2z6h_A 240 LVQNCLWTLRNLSDAATKQ---------EGMEGLLGTLVQL---L--GSDDINVVTCAAGILSNLTC 292 (644)
T ss_dssp HHHHHHHHHHHHGGGCTTC---------CSCHHHHHHHHHH---T--TCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcchhh---------hhhhhHHHHHHHH---H--cCCCHHHHHHHHHHHHHHHc
Confidence 6788888888887543211 1112334433322 2 13456666677777777665
No 66
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=85.60 E-value=4.2 Score=39.62 Aligned_cols=133 Identities=17% Similarity=0.181 Sum_probs=77.4
Q ss_pred CCCcchhhHHHHHHHHhhcccCcc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchH-HHHH
Q 002041 464 HNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVL 537 (976)
Q Consensus 464 ~~~w~~~Ea~L~~l~~i~e~~~~~-----~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l-~~~l 537 (976)
+.+..-.+.++++++.++..-+.. +...++.++..+.. .++.++..++++++..+..-..+.. ..+ ..++
T Consensus 65 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~i 140 (210)
T 4db6_A 65 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQ--AVIDAGAL 140 (210)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcC--CcHHHHHHHHHHHHHHHcCCHHHHH--HHHHcCcH
Confidence 346777899999999887543222 13456777776643 2689999999999998741111000 000 1133
Q ss_pred HHHHcccCCC-hHHHHHHHHHHHHHHHHhhh---hhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHH
Q 002041 538 SILTSGMSTS-EDTAAAAALAFRHICDDCRK---KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 607 (976)
Q Consensus 538 ~~l~~~l~~~-~~v~~~A~~al~~l~~~~~~---~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~v 607 (976)
+.+.+.+.++ .+++..|+.+|.++|..... .+.. ...+..+.+++.. -+.+.+.....+++.+
T Consensus 141 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~--~g~i~~L~~ll~~-----~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 141 PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE--AGALEKLEQLQSH-----ENEKIQKEAQEALEKL 207 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHH--TTHHHHHHHGGGC-----SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHH--CCCHHHHHHHHhC-----CCHHHHHHHHHHHHHH
Confidence 3344444433 35999999999999964322 2211 1234444455542 2456677777777654
No 67
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=85.27 E-value=1.7 Score=43.95 Aligned_cols=133 Identities=17% Similarity=0.188 Sum_probs=81.7
Q ss_pred CCcchhhHHHHHHHHhhcccCccc-----ccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchH-HHHHH
Q 002041 465 NEWRPAEAALFCIRAISTYVSVVE-----AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVLS 538 (976)
Q Consensus 465 ~~w~~~Ea~L~~l~~i~e~~~~~~-----~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l-~~~l~ 538 (976)
.+..-.+.++.+++.++..-+... ...++.++..+.. .++.++..++++++..+..-..... ... ..+++
T Consensus 66 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~i~ 141 (252)
T 4db8_A 66 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQ--AVIDAGALP 141 (252)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC--SCHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHhhcCCchHHH--HHHHCCCHH
Confidence 346677888999998886433221 2456777776654 3789999999999988642111100 011 12444
Q ss_pred HHHcccCCCh-HHHHHHHHHHHHHHHHhh---hhhh--cCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhc
Q 002041 539 ILTSGMSTSE-DTAAAAALAFRHICDDCR---KKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (976)
Q Consensus 539 ~l~~~l~~~~-~v~~~A~~al~~l~~~~~---~~L~--~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (976)
.+.+.+.++. .++..|+.+|.+++.... ..+. ..++.++ .++.. -+.+.+...+.+++.+...
T Consensus 142 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~----~ll~~-----~~~~v~~~a~~~L~~l~~~ 210 (252)
T 4db8_A 142 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV----QLLSS-----PNEQILQEALWALSNIASG 210 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH----HGGGC-----SSHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHH----HHHCC-----CCHHHHHHHHHHHHHHhcC
Confidence 5555555442 599999999999996432 2222 3444444 44432 2466788888888887754
No 68
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=82.74 E-value=64 Score=35.76 Aligned_cols=349 Identities=12% Similarity=0.109 Sum_probs=165.4
Q ss_pred CCcchhhHHHHHHHHhhcccCccc-----ccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCc------chH
Q 002041 465 NEWRPAEAALFCIRAISTYVSVVE-----AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDP------SIL 533 (976)
Q Consensus 465 ~~w~~~Ea~L~~l~~i~e~~~~~~-----~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~------~~l 533 (976)
.++...+.+..+++.++..-+... ...+|.+++.|.+ .++.++..++++++..+.. +++.. .-+
T Consensus 14 ~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s--~~~~~~~~A~~aL~nLa~~---~~~~k~~i~~~G~i 88 (457)
T 1xm9_A 14 QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS--PNQNVQQAAAGALRNLVFR---STTNKLETRRQNGI 88 (457)
T ss_dssp SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS--SCHHHHHHHHHHHHHHHSS---CHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhcC---CHHHHHHHHHcCCH
Confidence 356667788888888874322211 3456777777763 3788999999999887642 12100 135
Q ss_pred HHHHHHHHcccCCChHHHHHHHHHHHHHHHH--hhhhhhcCHHHHHHHHHHHhhc-------cCCCC----CCHHhHHHH
Q 002041 534 ASVLSILTSGMSTSEDTAAAAALAFRHICDD--CRKKLCGYLDGLYNVYRTAVNG-------EGSLK----VSAEDSLHL 600 (976)
Q Consensus 534 ~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~--~~~~L~~~l~~ll~~~~~~~~~-------~~~~~----l~~~~~~~l 600 (976)
+.++..+... .++ +++..|+.+|.+++.. ++..+.. ..+..+.+++.. ....+ .+.+-....
T Consensus 89 ~~Lv~lL~~~-~~~-~~~~~a~~aL~nLa~~~~~~~~i~~---g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a 163 (457)
T 1xm9_A 89 REAVSLLRRT-GNA-EIQKQLTGLLWNLSSTDELKEELIA---DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA 163 (457)
T ss_dssp HHHHHHHTTC-CCH-HHHHHHHHHHHHHHTSSSTHHHHHH---HHHHHHHHHTTHHHHTCC---------CCCHHHHHHH
T ss_pred HHHHHHHhhC-CCH-HHHHHHHHHHHHHhcCHHhHHHHHh---ccHHHHHHHHhccccccccCccchhcccccHHHHHHH
Confidence 5555555311 123 4999999999999964 3333331 233333333310 00000 122333356
Q ss_pred HHHHHHHHhcCChHHHHHHHH--HhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHH--------------------
Q 002041 601 VEALSMVITELPQVDAKKALE--MLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFA-------------------- 658 (976)
Q Consensus 601 ~eai~~vi~~~p~~~~~~~l~--~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~-------------------- 658 (976)
..+++.+... ++......+ ..+.+++.-++........+ .+ ........+..++
T Consensus 164 ~~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~-~~-~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 164 TGCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQNCVAASRCD-DK-SVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTT-CT-THHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHhhccccCCc-hH-HHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 6666666654 222222221 45566665555433222110 00 0000001111111
Q ss_pred --------HHhhhc-----------------CCcccHHHH-HHHHhHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhh-
Q 002041 659 --------YIFRYV-----------------NHPEAVADA-IQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKR- 711 (976)
Q Consensus 659 --------~~~~~~-----------------~~~~~~~~~-~~~~~~~l~~ll~~~~~~~~v~e~~~~~~~~~~~~~~~- 711 (976)
.++... ..++....+ -....+.+..++.. ..++++.|.++.++..+...-+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~-~~~~~~~e~a~~aL~nl~~~~~~~ 318 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGK-SKKDATLEACAGALQNLTASKGLM 318 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhh-cCCHHHHHHHHHHHHHhccCcCcc
Confidence 000000 001110000 02344555555554 34578899988888876532111
Q ss_pred -------hh--hhhHHHHHHHHHHHHhhcCCccHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhhhcCcccC-CCC
Q 002041 712 -------FM--GITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEF-TSR 781 (976)
Q Consensus 712 -------~~--~~~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~-~~~ 781 (976)
.+ ...+|.+++++. ++......-+..++.....++.....+.. ..+.....+|...+.. ...
T Consensus 319 ~~~~~~~~v~~~~~l~~Lv~LL~-----~~~~~v~~~A~~aL~nls~~~~~~~~i~~---~~i~~Lv~lL~~~~~~~~~~ 390 (457)
T 1xm9_A 319 SSGMSQLIGLKEKGLPQIARLLQ-----SGNSDVVRSGASLLSNMSRHPLLHRVMGN---QVFPEVTRLLTSHTGNTSNS 390 (457)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHTT-----CSCHHHHHHHHHHHHHHHTSGGGHHHHHH---HTHHHHHHTTTSCCSCSTTH
T ss_pred hHHHHHHHHHHcCCchHHHHHHh-----CCCHhHHHHHHHHHHHHhcCHHHHHHHHH---hhhHHHHHhccCCCCCCCCc
Confidence 11 244666666543 22223333334444444444434333322 2233344455431111 112
Q ss_pred CccHHHHHHHHHHHHhhCCCc---ccCcCChHHHHHHHHHhcccC-CchhHHHHHHHHHHhhc
Q 002041 782 PDVADDCFLLASRCIRYCPQL---FIPSSVFPSLVDCSMIGITVQ-HREASNSILTFLSDIFD 840 (976)
Q Consensus 782 pD~~~~~f~l~~~~~~~~p~~---~~~~~~l~~~~~~~~~~l~~~-~~~~~~~~~~fl~~l~~ 840 (976)
++++......+..++...+.. +.....++.+.++ +... +..+.+.|+..+..++.
T Consensus 391 ~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L----~~~~~~~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 391 EDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINL----CRSSASPKAAEAARLLLSDMWS 449 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHH----HHCTTCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHH----HcCCCcHHHHHHHHHHHHHHHc
Confidence 357777777777777766542 2222334444443 2334 56778888888887764
No 69
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=82.58 E-value=1.1e+02 Score=38.58 Aligned_cols=95 Identities=15% Similarity=0.197 Sum_probs=60.3
Q ss_pred chhhHHHHHHHHhhcccCccc--------------ccchHHHhhhccCC---------------------CCcHHHHHHH
Q 002041 468 RPAEAALFCIRAISTYVSVVE--------------AEVMPQVMALLPKL---------------------PQQPQLLQTV 512 (976)
Q Consensus 468 ~~~Ea~L~~l~~i~e~~~~~~--------------~~~l~~l~~~l~~~---------------------~~~~~v~~t~ 512 (976)
...|.++.+|..+.|.+...+ ...++.+++.+..+ ..++.++..+
T Consensus 148 ~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a 227 (1204)
T 3a6p_A 148 TQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAA 227 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHH
Confidence 457899999999987643211 11234554432110 0145688899
Q ss_pred HHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCChHHHHHHHHHHHHHHHH
Q 002041 513 CLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDD 564 (976)
Q Consensus 513 ~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~ 564 (976)
+.+++.|..|+.-+--. ..-..+++.++..+++++ ++..|+.+|..++..
T Consensus 228 L~~l~~~l~Wi~~~~i~-~~~~~ll~~l~~~l~~~~-lr~~A~ecL~~i~s~ 277 (1204)
T 3a6p_A 228 LNTLAGYIDWVSMSHIT-AENCKLLEILCLLLNEQE-LQLGAAECLLIAVSR 277 (1204)
T ss_dssp HHHHHTTTTTSCHHHHH-TTTSHHHHHHHHGGGCTT-THHHHHHHHHHHHTC
T ss_pred HHHHHHHHhccCHHHHH-hccchHHHHHHHHcCCHH-HHHHHHHHHHHHHhC
Confidence 99999999987632000 000136666667777777 999999999999964
No 70
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=81.51 E-value=97 Score=37.03 Aligned_cols=229 Identities=11% Similarity=0.047 Sum_probs=122.0
Q ss_pred HHHHHHhhcccCccc------ccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCC
Q 002041 474 LFCIRAISTYVSVVE------AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS 547 (976)
Q Consensus 474 L~~l~~i~e~~~~~~------~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~ 547 (976)
.+++.++..+.+... ...++.++.++.+ .++.++..+++++|..+.--..... ....-++.|...+...
T Consensus 268 ~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s--~~~~~q~~A~~al~~aa~~~~~R~~---I~~~gv~~L~~Ll~s~ 342 (810)
T 3now_A 268 TVAITALLNGPLDVGNQVVAREGILQMILAMATT--DDELQQRVACECLIAASSKKDKAKA---LCEQGVDILKRLYHSK 342 (810)
T ss_dssp HHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHS--SCHHHHHHHHHHHHHHTTSHHHHHT---THHHHHHHHHHHTTCS
T ss_pred HHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCcHHHHH---HHHcCcHHHHHHHcCC
Confidence 455555554433322 3556667666643 3788999999999986542111110 2222224444444332
Q ss_pred -hHHHHHHHHHHHHHHHHhh-----hhhh-cCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHH
Q 002041 548 -EDTAAAAALAFRHICDDCR-----KKLC-GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKAL 620 (976)
Q Consensus 548 -~~v~~~A~~al~~l~~~~~-----~~L~-~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l 620 (976)
..++..|+.+|.++..... +.+. .-++.++..+..++..+ ..+.+.+...+++++++... ++......
T Consensus 343 ~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~---~~d~~v~~~AveaLayLS~~--~~vk~~lv 417 (810)
T 3now_A 343 NDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKP---GKDKDIRRWAADGLAYLTLD--AECKEKLI 417 (810)
T ss_dssp CHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCS---SCCSSHHHHHHHHHHHHTTS--HHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHhCC--cHHHHHHH
Confidence 3488888888888864321 2222 23677888888887653 23567899999999988655 22222222
Q ss_pred --HHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcC--------------------Cccc------H--
Q 002041 621 --EMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN--------------------HPEA------V-- 670 (976)
Q Consensus 621 --~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~--------------------~~~~------~-- 670 (976)
...+.++++- +.... ......++..++.+..+-. .+++ +
T Consensus 418 ~d~g~Ip~LV~L----L~s~d-------~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~ 486 (810)
T 3now_A 418 EDKASIHALMDL----ARGGN-------QSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINK 486 (810)
T ss_dssp HCHHHHHHHHHH----HHTTC-------GGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHH
T ss_pred HccchHHHHHHH----hCCCC-------hHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHH
Confidence 2344444443 33221 1111223444554444220 0111 1
Q ss_pred --HHHH-HHHhHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH--hhhhhh--hhHHHHHHHHH
Q 002041 671 --ADAI-QRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRT--SKRFMG--ITIGAILEEIQ 725 (976)
Q Consensus 671 --~~~~-~~~~~~l~~ll~~~~~~~~v~e~~~~~~~~~~~~--~~~~~~--~~l~~l~~~l~ 725 (976)
..++ ...+|.+..++.. .++.+.+.++.++..+... ....+. .-+|+++..+.
T Consensus 487 r~~~VveaGaVp~LV~LL~s--~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~ 546 (810)
T 3now_A 487 RITVLANEGITTALCALAKT--ESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMAL 546 (810)
T ss_dssp HHHHHHHTTHHHHHHHHHTC--CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc
Confidence 1111 2467777777764 5678999999998876532 111221 34677776654
No 71
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=74.42 E-value=1.1e+02 Score=34.02 Aligned_cols=134 Identities=14% Similarity=0.095 Sum_probs=82.4
Q ss_pred CcchhhHHHHHHHHhhcccCccc-----ccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHH
Q 002041 466 EWRPAEAALFCIRAISTYVSVVE-----AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 540 (976)
Q Consensus 466 ~w~~~Ea~L~~l~~i~e~~~~~~-----~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l 540 (976)
+....+++..++..++.. +... ...++.++..+.. .++.++..++++++.++...... . ....+++.+
T Consensus 199 ~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~-~---~~~~~i~~L 271 (529)
T 1jdh_A 199 YEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTD--PSQRLVQNCLWTLRNLSDAATKQ-E---GMEGLLGTL 271 (529)
T ss_dssp CHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTTTS--SCHHHHHHHHHHHHHHHTTCTTC-S---CCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhC--CChHHHHHHHHHHHHHhcCChhh-H---HHHhHHHHH
Confidence 455677888888888742 2111 2345555555432 26888999999999887653322 1 344566666
Q ss_pred HcccCCC-hHHHHHHHHHHHHHHHH---hhhhhh--cCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCCh
Q 002041 541 TSGMSTS-EDTAAAAALAFRHICDD---CRKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ 613 (976)
Q Consensus 541 ~~~l~~~-~~v~~~A~~al~~l~~~---~~~~L~--~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~ 613 (976)
.+.++++ .+++..|+.+|.+++.. .+..+. .-++.+++.+..-- -..+.+...+.+++.+...-|.
T Consensus 272 ~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~-------~~~~v~~~a~~~L~nl~~~~~~ 343 (529)
T 1jdh_A 272 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG-------DREDITEPAICALRHLTSRHQE 343 (529)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHHTSSSTT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccC-------CHHHHHHHHHHHHHHHHcCCch
Confidence 6656543 25999999999999863 333333 23455555443321 1256778888889888665554
No 72
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=72.25 E-value=35 Score=34.70 Aligned_cols=117 Identities=9% Similarity=0.079 Sum_probs=73.3
Q ss_pred CCCcchhhHHHHHHHHhhcccCcccccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcc
Q 002041 464 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 543 (976)
Q Consensus 464 ~~~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~ 543 (976)
+.++.-..+++.+++.++...+......++.++..+.. .++.+|..++..+|.+.. +. .++.++..+
T Consensus 102 d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d--~~~~vR~~a~~aL~~~~~-----~~---~~~~L~~~l--- 168 (280)
T 1oyz_A 102 DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFD--KSTNVRRATAFAISVIND-----KA---TIPLLINLL--- 168 (280)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTC--SCHHHHHHHHHHHHTC--------C---CHHHHHHHH---
T ss_pred CCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhC--CCHHHHHHHHHHHHhcCC-----HH---HHHHHHHHH---
Confidence 45677789999999998854432223345555544432 478999999999998753 43 555555544
Q ss_pred cCCCh-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHH
Q 002041 544 MSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 607 (976)
Q Consensus 544 l~~~~-~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~v 607 (976)
.++. .|+..|+.++.++.. .-+..+..+...+.. -+...|...+.++|.+
T Consensus 169 -~d~~~~vr~~a~~aL~~~~~--------~~~~~~~~L~~~l~d-----~~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 169 -KDPNGDVRNWAAFAININKY--------DNSDIRDCFVEMLQD-----KNEEVRIEAIIGLSYR 219 (280)
T ss_dssp -TCSSHHHHHHHHHHHHHHTC--------CCHHHHHHHHHHTTC-----SCHHHHHHHHHHHHHT
T ss_pred -cCCCHHHHHHHHHHHHhhcc--------CcHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHh
Confidence 4442 499999999987631 122344444555532 2466788888887754
No 73
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=65.94 E-value=91 Score=29.48 Aligned_cols=199 Identities=12% Similarity=0.184 Sum_probs=123.2
Q ss_pred CCCcchhhHHHHHHHHhhcccCcccccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcc
Q 002041 464 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 543 (976)
Q Consensus 464 ~~~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~ 543 (976)
..-|.-.--++..+..+++..++--.+.+..++.++..-. .-.+.+.....+|..+ .-+|+ .+.++++.++..
T Consensus 43 DDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksE-aIpltqeIa~a~G~la---~i~Pe---~v~~vVp~lfan 115 (253)
T 2db0_A 43 DDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSE-AIPLTQEIAKAFGQMA---KEKPE---LVKSMIPVLFAN 115 (253)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC-SHHHHHHHHHHHHHHH---HHCHH---HHHHHHHHHHHH
T ss_pred cHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcc-cCchHHHHHHHHhHHH---HhCHH---HHHhhHHHHHHH
Confidence 4568877788899999998877655677777887765322 2224455556667655 34676 899999999865
Q ss_pred c--CCChHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHH
Q 002041 544 M--STSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALE 621 (976)
Q Consensus 544 l--~~~~~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~ 621 (976)
. .+++ .+..-++++..+.......+..... -+..++.++ +..++..++. .|++++... -
T Consensus 116 yrigd~k-ikIn~~yaLeeIaranP~l~~~v~r----di~smltsk-----d~~Dkl~aLn----Fi~alGen~-----~ 176 (253)
T 2db0_A 116 YRIGDEK-TKINVSYALEEIAKANPMLMASIVR----DFMSMLSSK-----NREDKLTALN----FIEAMGENS-----F 176 (253)
T ss_dssp SCCCSHH-HHHHHHHHHHHHHHHCHHHHHHHHH----HHHHHTSCS-----SHHHHHHHHH----HHHTCCTTT-----H
T ss_pred HhcCCcc-ceecHHHHHHHHHHhChHHHHHHHH----HHHHHhcCC-----ChHHHHHHHH----HHHHHhccC-----c
Confidence 4 4455 8889999999999876654443333 333444321 2455554443 445555332 2
Q ss_pred HhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcCC-HHHHHHHHH
Q 002041 622 MLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWD-MRTMESLCR 700 (976)
Q Consensus 622 ~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~-~~v~e~~~~ 700 (976)
.++.|.+.++..++...+. -. -..+.+.+..+..- + .++-+++...++.+.+. ..+...+..
T Consensus 177 ~yv~PfLprL~aLL~D~de-----iV--RaSaVEtL~~lA~~----n------pklRkii~~kl~e~~D~S~lv~~~V~e 239 (253)
T 2db0_A 177 KYVNPFLPRIINLLHDGDE-----IV--RASAVEALVHLATL----N------DKLRKVVIKRLEELNDTSSLVNKTVKE 239 (253)
T ss_dssp HHHGGGHHHHHGGGGCSSH-----HH--HHHHHHHHHHHHTS----C------HHHHHHHHHHHHHCCCSCHHHHHHHHH
T ss_pred cccCcchHHHHHHHcCcch-----hh--hHHHHHHHHHHHHc----C------HHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4578888888888775321 11 23456777766652 1 23556677777777653 445556666
Q ss_pred HHHHH
Q 002041 701 ACKYA 705 (976)
Q Consensus 701 ~~~~~ 705 (976)
.+.++
T Consensus 240 gL~rl 244 (253)
T 2db0_A 240 GISRL 244 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 74
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=64.01 E-value=1e+02 Score=29.37 Aligned_cols=172 Identities=15% Similarity=0.028 Sum_probs=95.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHH
Q 002041 7 VKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDS 86 (976)
Q Consensus 7 v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~~~lr~~ 86 (976)
+...+..+ .++|+..|..|-..|.++. .+++......+|.+ .+..+|..|+..|...- +++.. ..
T Consensus 21 ~~~L~~~L-~~~~~~vR~~A~~~L~~~~-~~~~~~~L~~~l~~--~~~~vr~~a~~aL~~~~-------~~~~~----~~ 85 (211)
T 3ltm_A 21 VEMYIKNL-QDDSYYVRRAAAYALGKIG-DERAVEPLIKALKD--EDAWVRRAAADALGQIG-------DERAV----EP 85 (211)
T ss_dssp HHHHHHHT-TCSSHHHHHHHHHHHHHHC-CGGGHHHHHHHTTC--SCHHHHHHHHHHHHHHC-------CGGGH----HH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHcC--CCHHHHHHHHHHHHhhC-------CHHHH----HH
Confidence 44444444 6789999999999999886 47888888888875 47789999999987542 12222 22
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CcHHHHHHHHhhcccccc-cc---cc-
Q 002041 87 LNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEVF-NY---KI- 160 (976)
Q Consensus 87 Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l~~~~-~~~~~~L~~L~~l~EE~~-~~---~~- 160 (976)
|+..+. .....||...+.+|+.+. -+. .++.+.+.+.... .........|..+..+-. .. .+
T Consensus 86 L~~~l~---~~~~~vr~~a~~aL~~~~-------~~~--~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~ 153 (211)
T 3ltm_A 86 LIKALK---DEDGWVRQSAAVALGQIG-------DER--AVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALK 153 (211)
T ss_dssp HHHHTT---CSSHHHHHHHHHHHHHHC-------CGG--GHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT
T ss_pred HHHHHc---CCCHHHHHHHHHHHHHhC-------cHH--HHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHc
Confidence 333332 245678877777776542 122 4566666664322 223334444444432200 00 00
Q ss_pred cCChhHHHHHHHHHHH-hHHHHHHHHHHhhhh--hHHHHHHHHHHHHh
Q 002041 161 AARPERRRQFEKELTS-QMEVALSTLTACLHI--NELKEQVLEAFASW 205 (976)
Q Consensus 161 ~~~~~~r~~l~~~l~~-~~~~vl~~l~~~l~~--~~~~~~~l~~~~sW 205 (976)
.-...-|...-..|.. ..+.+...+...+.+ +.++..+.+++...
T Consensus 154 d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 154 DEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 0012223333333322 124555666666654 35777777777643
No 75
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=63.44 E-value=1.1e+02 Score=29.36 Aligned_cols=159 Identities=12% Similarity=0.150 Sum_probs=88.1
Q ss_pred HHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcccccchHHHhhhcc-----CCCCcHHHHHHHHHHHHhcHH
Q 002041 447 KILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-----KLPQQPQLLQTVCLTIGAYSK 521 (976)
Q Consensus 447 ~~l~~~l~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~-----~~~~~~~v~~t~~~~ig~y~~ 521 (976)
+..++.+.+.+. + ..+++++..+.. +++-.+.+|-++.++. ++. +..+..+.+.++..
T Consensus 10 q~yf~~It~a~~-----~---~~r~~aL~sL~~-----D~gL~~LlPyf~~fI~~~v~~nl~-~l~~L~~lm~~~~A--- 72 (196)
T 4atg_A 10 QLYFDKILSMIK-----S---DMKDIAIECLEK-----ESGLQQLVPYFIQHISELILKSFK-EAEVLKTCIALYFS--- 72 (196)
T ss_dssp HHHHHHHHHHHT-----S---TTHHHHHHHHHH-----CSSCTTTHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHH-----h---HHHHHHHHHHhc-----CCChhhhHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHH---
Confidence 445566666553 2 335777766652 2223567888877753 222 34444444444433
Q ss_pred HHhhCCCC------cchHHHHHHHHHc-ccCCChHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCH
Q 002041 522 WFDAASSD------PSILASVLSILTS-GMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSA 594 (976)
Q Consensus 522 ~~~~~p~~------~~~l~~~l~~l~~-~l~~~~~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~ 594 (976)
+-.||.. ++++|+++..++. .+. +..++..||..+..+|+.++..-..--+-+...+.+.+-.+ +-+
T Consensus 73 -Ll~N~~l~lepYlH~LipsvLtCll~k~l~-~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp---~~~- 146 (196)
T 4atg_A 73 -LIKNKHVFIDPYLHQILPSLLTCVIGKSIV-DDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDP---NRS- 146 (196)
T ss_dssp -HHHCTTCCCGGGHHHHHHHHHHHHHCTTCC-CHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCT---TSC-
T ss_pred -HHcCCCCChHHHHHHHHHHHHHHHHhcccC-HHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCC---CCC-
Confidence 4445542 2455666665542 222 22499999999999999988755555566777777776432 122
Q ss_pred HhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHH
Q 002041 595 EDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEII 635 (976)
Q Consensus 595 ~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~ 635 (976)
....|.|+. .+.++++ ..+..++-|-+..+.+-+
T Consensus 147 --l~t~YGAi~-GL~~lG~----~~vr~~llP~l~~~~~~~ 180 (196)
T 4atg_A 147 --EDSQYGALY-CLSILSK----NVVNTVIREHAEEYKRTI 180 (196)
T ss_dssp --HHHHHHHHH-HHHHHCH----HHHHTHHHHHHHHHHHHT
T ss_pred --hHHHHHHHH-HHHHhHH----HHHHHhhhcCHHHHHHHH
Confidence 334444443 2445554 334455556655554443
No 76
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=59.72 E-value=85 Score=31.84 Aligned_cols=188 Identities=9% Similarity=-0.004 Sum_probs=91.1
Q ss_pred CHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCCcccHHH
Q 002041 593 SAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVAD 672 (976)
Q Consensus 593 ~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 672 (976)
...+|...++.+..++...+.+....-....+.-....+...+... +.......++++..++..+........
T Consensus 22 ~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-------N~~v~~~al~~l~~~~~~~~~~~~~~~ 94 (278)
T 4ffb_C 22 LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-------NVVAQEQAIVALNSLIDAFASSSLKNA 94 (278)
T ss_dssp SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-------SHHHHHHHHHHHHHHHTTCC---CCHH
T ss_pred cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-------hHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 3678999999998888876644332211111222222334444322 122334567888877776543211111
Q ss_pred HHH-HHhHHHHHHHHh-hc-CCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhh-cC--CccHHHHHHHHHHH
Q 002041 673 AIQ-RLWPIFKAIFDI-RA-WDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQ-HQ--QPCFLYLSSEVIKI 746 (976)
Q Consensus 673 ~~~-~~~~~l~~ll~~-~~-~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~-~~--~~~~L~l~~~li~~ 746 (976)
... .+-.++..++++ .. ....+++.+..++-.++...+. ...+++.+...+.. +| ....+.++..++..
T Consensus 95 ~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~-----~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~ 169 (278)
T 4ffb_C 95 HNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS-----ITQSVELVIPFFEKKLPKLIAAAANCVYELMAA 169 (278)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-----SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 111 122344445555 22 3456777666665544432111 12223333333332 11 24567788889999
Q ss_pred hCCCCcchHHHHHHHHHHHHHHHhhhcCcccCCCCCccHHHHHHHHHHHHhhCC
Q 002041 747 FGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCP 800 (976)
Q Consensus 747 ~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p 800 (976)
||...- .. ...+..++.....++. +.+|+++.+-.+++..+.+...
T Consensus 170 fg~~~~-~~--k~~l~~i~~~l~k~l~-----d~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 170 FGLTNV-NV--QTFLPELLKHVPQLAG-----HGDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp HTTTTC-CH--HHHHHHHGGGHHHHHT-----CSSHHHHHHHHHHHHHHHTC--
T ss_pred hCCCcC-Cc--hhHHHHHHHHHHHHHh-----CCcHHHHHHHHHHHHHHHHHhC
Confidence 996521 11 1222222222333343 5678999999999988887543
No 77
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=56.87 E-value=2.4e+02 Score=31.29 Aligned_cols=257 Identities=12% Similarity=0.073 Sum_probs=135.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcC----------hhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCCCChhh
Q 002041 10 ALNALYHHPDDAVRMQADRWLQDFQHT----------IDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEA 79 (976)
Q Consensus 10 al~~ly~~~d~~~r~~A~~~L~~~q~s----------~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~ 79 (976)
.+..+..+.|+..|..|-..|..+-.. +++......+|.+ +.+.+++..|+..|++.... ++.
T Consensus 21 ~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~-~~~~~~~~~a~~~L~~ls~~------~~~ 93 (529)
T 1jdh_A 21 ELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTAGTLHNLSHH------REG 93 (529)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTS------HHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhc-CCCHHHHHHHHHHHHHHHcC------chh
Confidence 344455678999999999999887654 3455556677764 35778999999999974331 222
Q ss_pred HHHH-HHHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhccccccC---CccchHHHHHhcCCCCC-cHHHHHHHHhhccc
Q 002041 80 VRGL-QDSLNTLLKKFH-KGPPKVRTQISIAVAALAVHISAEDWG---GGGIVNWLRDEMNSHPE-FVPGFLELLTVLPE 153 (976)
Q Consensus 80 ~~~l-r~~Ll~~l~~~~-~~~~~v~~kL~~~La~l~~~~~~~~W~---~~~~~~~l~~~l~~~~~-~~~~~L~~L~~l~E 153 (976)
+..+ +...+..+.+.- .+...++...+.+|..+...... ... +.+.++.+++.+.+... ........|..+..
T Consensus 94 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~ 172 (529)
T 1jdh_A 94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 172 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTT-HHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcc-hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 3222 223444444432 34567888888888887764321 110 01256777777765332 22334445544432
Q ss_pred ccccccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhccCCCCCcccccchhHHHHHhcCCCc
Q 002041 154 EVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE 233 (976)
Q Consensus 154 E~~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~~~~~L~~~ 233 (976)
. .++.+..+.+. ...+.++.++... ..+.....+..++....... -....+.....++.+...+.++
T Consensus 173 ~--------~~~~~~~i~~~--~~i~~L~~ll~~~-~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~g~~~~L~~ll~~~ 239 (529)
T 1jdh_A 173 G--------NQESKLIILAS--GGPQALVNIMRTY-TYEKLLWTTSRVLKVLSVCS--SNKPAIVEAGGMQALGLHLTDP 239 (529)
T ss_dssp T--------CHHHHHHHHHT--THHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTST--THHHHHHHTTHHHHHHTTTTSS
T ss_pred C--------CHHHHHHHHHC--CCHHHHHHHHHhC-ChHHHHHHHHHHHHHHhcCc--ccHHHHHHCCCHHHHHHHHhCC
Confidence 1 11112111111 1234444444332 11234445555554433210 0011233456777778777653
Q ss_pred --chHHHHHHHHHHHhhhhccCCCCCccCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhh
Q 002041 234 --ILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGD 301 (976)
Q Consensus 234 --~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~v~~l~~~~~~~~~d~e~~~~~~~l~~~~~~ 301 (976)
++...++.++..+....... . .+...+|.+..+ + ...|.+.....+..+..++.
T Consensus 240 ~~~~~~~a~~~L~~l~~~~~~~------~---~~~~~i~~L~~l---l--~~~~~~v~~~a~~~L~~L~~ 295 (529)
T 1jdh_A 240 SQRLVQNCLWTLRNLSDAATKQ------E---GMEGLLGTLVQL---L--GSDDINVVTCAAGILSNLTC 295 (529)
T ss_dssp CHHHHHHHHHHHHHHHTTCTTC------S---CCHHHHHHHHHH---T--TCSCHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHhcCChhh------H---HHHhHHHHHHHH---H--cCCCHHHHHHHHHHHHHHhc
Confidence 56777888888777543211 1 112334443332 2 23456666667777777765
No 78
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=56.22 E-value=74 Score=30.43 Aligned_cols=55 Identities=20% Similarity=0.050 Sum_probs=41.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 002041 10 ALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSK 67 (976)
Q Consensus 10 al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~k 67 (976)
.+..+...+|+..|..|-..|..+. .+++......++.+ .+..||..|+..|...
T Consensus 85 ~L~~~l~~~~~~vr~~a~~aL~~~~-~~~~~~~L~~~l~d--~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 85 PLIKALKDEDGWVRQSAAVALGQIG-DERAVEPLIKALKD--EDWFVRIAAAFALGEI 139 (211)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHC-CGGGHHHHHHHTTC--SSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhC-cHHHHHHHHHHHhC--CCHHHHHHHHHHHHHc
Confidence 3334447788889999988888875 57788888888864 5778999999888754
No 79
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=54.50 E-value=89 Score=29.55 Aligned_cols=55 Identities=20% Similarity=0.050 Sum_probs=42.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 002041 10 ALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSK 67 (976)
Q Consensus 10 al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~k 67 (976)
.+..+...+|+..|..|-..|..+. .+++......++.+ .+..||..|+..|...
T Consensus 80 ~L~~~l~d~~~~vr~~a~~aL~~~~-~~~~~~~L~~~l~d--~~~~vr~~a~~aL~~~ 134 (201)
T 3ltj_A 80 PLIKALKDEDGWVRQSAAVALGQIG-DERAVEPLIKALKD--EDWFVRIAAAFALGEI 134 (201)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHC-CGGGHHHHHHHTTC--SSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhC-cHHHHHHHHHHHcC--CCHHHHHHHHHHHHHh
Confidence 3344446789999999999998875 57788888888864 5778999999998754
No 80
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=51.38 E-value=2.1e+02 Score=34.59 Aligned_cols=104 Identities=14% Similarity=0.177 Sum_probs=71.2
Q ss_pred hhhHHHHHHHHhhcccCcccccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCCh
Q 002041 469 PAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE 548 (976)
Q Consensus 469 ~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~ 548 (976)
-+.++..+|+-|+-+ +.+.++.+++.+.+-. +|.+|+.+...+|..+ ..+|. +.++..|....+++.
T Consensus 594 VRraAViaLGlI~~g----~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~---aGn~~-----~~aid~L~~L~~D~d 660 (963)
T 4ady_A 594 VRRAAVIALGFVLLR----DYTTVPRIVQLLSKSH-NAHVRCGTAFALGIAC---AGKGL-----QSAIDVLDPLTKDPV 660 (963)
T ss_dssp HHHHHHHHHHHHTSS----SCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHT---SSSCC-----HHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHhhccC----CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhc---cCCCc-----HHHHHHHHHHccCCC
Confidence 346777777765422 1246888888776533 6899999999999765 33442 556666655566653
Q ss_pred -HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhh
Q 002041 549 -DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN 585 (976)
Q Consensus 549 -~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~ 585 (976)
.|+..|..|+..+-........|.+..++..+.....
T Consensus 661 ~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~ 698 (963)
T 4ady_A 661 DFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVIT 698 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHh
Confidence 5999999999987766555666777777777666654
No 81
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=49.40 E-value=2.6e+02 Score=29.51 Aligned_cols=220 Identities=10% Similarity=0.016 Sum_probs=113.0
Q ss_pred cchhhHHHHHHHHhhcccCcc-----cccchHHHhhhcc------C-CC--CcHHHHHHHHHHHHhcHHHHhhCCCCcch
Q 002041 467 WRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLP------K-LP--QQPQLLQTVCLTIGAYSKWFDAASSDPSI 532 (976)
Q Consensus 467 w~~~Ea~L~~l~~i~e~~~~~-----~~~~l~~l~~~l~------~-~~--~~~~v~~t~~~~ig~y~~~~~~~p~~~~~ 532 (976)
-..+..++++|+-++.. ++. +...++.++.+|. . .. .++.++..+++++...+.--..++ ..
T Consensus 46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k---~~ 121 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANK---AT 121 (354)
T ss_dssp GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHH---HH
T ss_pred hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHH---HH
Confidence 45567889999988854 222 1244666666662 1 11 247899999999988763111111 11
Q ss_pred H---HHHHHHHHcccCCC-hHHHHHHHHHHHHHHH----Hhhhhhh--cCHHHHHHHHHHHhhccCCCCCCHHhHHHHHH
Q 002041 533 L---ASVLSILTSGMSTS-EDTAAAAALAFRHICD----DCRKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVE 602 (976)
Q Consensus 533 l---~~~l~~l~~~l~~~-~~v~~~A~~al~~l~~----~~~~~L~--~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~e 602 (976)
+ ..+++.|++.+..+ ..++..|+.+|++++. +.+..+. .-++.+++.+.. . -+.+.+.....
T Consensus 122 i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~---~-----~~~~~~~~A~~ 193 (354)
T 3nmw_A 122 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE---V-----KKESTLKSVLS 193 (354)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHH---C-----CCHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhc---C-----CCHHHHHHHHH
Confidence 2 34566666666544 3599999999999985 3455554 346666655432 1 13456666677
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCCcccHHHHH--HHHhHH
Q 002041 603 ALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI--QRLWPI 680 (976)
Q Consensus 603 ai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~--~~~~~~ 680 (976)
++..+...- ++....... ....+..|-+++...............+..|..++..+.. .+ ...+.+ ...+|.
T Consensus 194 aL~nLs~~~-~~nk~~i~~--~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~--~~-~~~~~i~~~g~i~~ 267 (354)
T 3nmw_A 194 ALWNLSAHC-TENKADICA--VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT--NE-DHRQILRENNCLQT 267 (354)
T ss_dssp HHHHHHTTC-HHHHHHHHH--STTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTT--CH-HHHHHHHTTTHHHH
T ss_pred HHHHHHccC-hhhhHHHHH--hcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccC--CH-HHHHHHHHcCCHHH
Confidence 777665522 222222210 1233444444544332100000011222334444432111 11 111211 234565
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHH
Q 002041 681 FKAIFDIRAWDMRTMESLCRACKYAV 706 (976)
Q Consensus 681 l~~ll~~~~~~~~v~e~~~~~~~~~~ 706 (976)
+..++.. .+.++.+.++.++..+.
T Consensus 268 Lv~lL~~--~~~~v~~~A~~aL~nLa 291 (354)
T 3nmw_A 268 LLQHLKS--HSLTIVSNACGTLWNLS 291 (354)
T ss_dssp HHHHTTC--SCHHHHHHHHHHHHHHT
T ss_pred HHHHHcC--CChHHHHHHHHHHHHHh
Confidence 6555543 45678888888877654
No 82
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=47.48 E-value=22 Score=33.57 Aligned_cols=120 Identities=15% Similarity=0.109 Sum_probs=67.9
Q ss_pred HHHHHHHhhcccCcccccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCCh-HHH
Q 002041 473 ALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTA 551 (976)
Q Consensus 473 ~L~~l~~i~e~~~~~~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~-~v~ 551 (976)
.-|++.-|+..-+.-.......++.++. -| +..=+.+++.+||...+ .++. +..+.++-++.-+++.. -|+
T Consensus 127 ~~yaLeeIaranP~l~~~v~rdi~smlt-sk-d~~Dkl~aLnFi~alGe---n~~~---yv~PfLprL~aLL~D~deiVR 198 (253)
T 2db0_A 127 VSYALEEIAKANPMLMASIVRDFMSMLS-SK-NREDKLTALNFIEAMGE---NSFK---YVNPFLPRIINLLHDGDEIVR 198 (253)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHTS-CS-SHHHHHHHHHHHHTCCT---TTHH---HHGGGHHHHHGGGGCSSHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHhc-CC-ChHHHHHHHHHHHHHhc---cCcc---ccCcchHHHHHHHcCcchhhh
Confidence 4456665554433211222233333343 22 45567788888887753 2332 56666666667776653 588
Q ss_pred HHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhc
Q 002041 552 AAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (976)
Q Consensus 552 ~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (976)
..|..++.+++....+ +.+-+...+ +.+ + .-+...+..+-||++.++-.
T Consensus 199 aSaVEtL~~lA~~npk-lRkii~~kl---~e~-~-----D~S~lv~~~V~egL~rl~l~ 247 (253)
T 2db0_A 199 ASAVEALVHLATLNDK-LRKVVIKRL---EEL-N-----DTSSLVNKTVKEGISRLLLL 247 (253)
T ss_dssp HHHHHHHHHHHTSCHH-HHHHHHHHH---HHC-C-----CSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCHH-HHHHHHHHH---HHh-c-----CcHHHHHHHHHHHHHHHHHH
Confidence 8999999988875433 333322222 221 1 24566788889999877643
No 83
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=44.61 E-value=1.5e+02 Score=33.46 Aligned_cols=101 Identities=15% Similarity=0.165 Sum_probs=64.9
Q ss_pred hhhHHHHHHHHhhcccCcccccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCCh
Q 002041 469 PAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE 548 (976)
Q Consensus 469 ~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~ 548 (976)
-+|+|-.+++++ ..++.+ ...+.+++..+. ...-.+|..++.-+.=+.+.+. -++.+++.+..|+.+++
T Consensus 244 VRETaAQtLGaL-~hLp~e-~~IL~qLV~~l~--~~~WEVRHGGLLGLKYL~DLL~-------~Ld~Vv~aVL~GL~D~D 312 (800)
T 3oc3_A 244 VRDAAAYLLSRI-YPLIGP-NDIIEQLVGFLD--SGDWQVQFSGLIALGYLKEFVE-------DKDGLCRKLVSLLSSPD 312 (800)
T ss_dssp HHHHHHHHHHHH-TTTSCS-CCHHHHHTTGGG--CSCHHHHHHHHHHHHHTGGGCC-------CHHHHHHHHHHHTTCSS
T ss_pred hHHHHHHHHHHH-HhCChh-HHHHHHHHhhcC--CCCeeehhhhHHHHHHHHHHHH-------HHHHHHHHHHhhcCCcc
Confidence 468888888888 666654 334444443221 1235677777766652211111 27899999999998874
Q ss_pred -HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhc
Q 002041 549 -DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNG 586 (976)
Q Consensus 549 -~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~ 586 (976)
+|+..||.+|.-++ ....++.+++.+=+.+..
T Consensus 313 DDVRAVAAetLiPIA------~p~~l~~LL~iLWd~L~~ 345 (800)
T 3oc3_A 313 EDIKLLSAELLCHFP------ITDSLDLVLEKCWKNIES 345 (800)
T ss_dssp HHHHHHHHHHHTTSC------CSSTHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhhhhc------chhhHHHHHHHHHHHhhh
Confidence 69999999998887 224566666666555544
No 84
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=43.94 E-value=2.7e+02 Score=28.07 Aligned_cols=168 Identities=10% Similarity=0.064 Sum_probs=93.3
Q ss_pred CchHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHH-HhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHH
Q 002041 52 SNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLK-KFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWL 130 (976)
Q Consensus 52 ~~~~v~ffaa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~-~~~~~~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l 130 (976)
++..-+.-|...|...+.. +++.....-+.++.|+. ++...+..|..+....|..++-+....++.- .+.
T Consensus 58 ~d~k~~~~ale~L~~~l~~-----~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~---~~~- 128 (266)
T 2of3_A 58 KDFKQHLAALDSLVRLADT-----SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPM---SQE- 128 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHH-----CHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCC---CHH-
T ss_pred CCHHHHHHHHHHHHHHhhh-----ChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc---hHH-
Confidence 3555677777788776653 23344444455677765 3445566677777788777765443222221 000
Q ss_pred HHhcCCCCCcHHHHHHHHhhcccccccccccCChhHHHHHHHHH----HHhHH-HHHHHHHHhhhh--hHHHHHHHHHHH
Q 002041 131 RDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKEL----TSQME-VALSTLTACLHI--NELKEQVLEAFA 203 (976)
Q Consensus 131 ~~~l~~~~~~~~~~L~~L~~l~EE~~~~~~~~~~~~r~~l~~~l----~~~~~-~vl~~l~~~l~~--~~~~~~~l~~~~ 203 (976)
-...++-.|.|-+++.+ ..-|...++.+ .-+.+ .++..+...+.+ ...+..++.++.
T Consensus 129 ------------ea~~~lP~LveKlGd~k----~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~ 192 (266)
T 2of3_A 129 ------------EVSAFVPYLLLKTGEAK----DNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIE 192 (266)
T ss_dssp ------------HHHHHHHHHHHGGGCSS----HHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHhCCCh----HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 01112222333333322 12222332222 11222 366666666654 257788888888
Q ss_pred HhhhccCCCCCcccccchhH---HHHHhcCCCc--chHHHHHHHHHHHhhhh
Q 002041 204 SWLRLKHRIPGSVLASHPLV---LTALSSLHSE--ILSEASVNVISELIHYS 250 (976)
Q Consensus 204 sWi~~~~~i~~~~l~~~~l~---~~~~~~L~~~--~~~~~a~~~l~~ii~~~ 250 (976)
+-++-. +++. ...+ +.+...++++ +.+++|+.|+.++....
T Consensus 193 ~li~~~-G~~~-----~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 193 YYITNA-GISP-----LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp HHHHHH-CSGG-----GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhc-CCCc-----cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 888764 3442 2244 7777888764 68999999999999654
No 85
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=41.12 E-value=1.6e+02 Score=33.12 Aligned_cols=166 Identities=12% Similarity=0.141 Sum_probs=93.0
Q ss_pred CCCcchhhHHHHHHHHhhcccCcc-------cccchHHHhhhcc--CCC---C---cHHHHHHHHHHHHhcHHHHhhCCC
Q 002041 464 HNEWRPAEAALFCIRAISTYVSVV-------EAEVMPQVMALLP--KLP---Q---QPQLLQTVCLTIGAYSKWFDAASS 528 (976)
Q Consensus 464 ~~~w~~~Ea~L~~l~~i~e~~~~~-------~~~~l~~l~~~l~--~~~---~---~~~v~~t~~~~ig~y~~~~~~~p~ 528 (976)
+..|..+-+|..+++.+-..-..+ +.+...+++..+. ++. + -..||.|++.++|.. .++...
T Consensus 185 dp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e-- 261 (800)
T 3oc3_A 185 SYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP-- 261 (800)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS--
T ss_pred CcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh--
Confidence 578999999999999876544311 1244455554432 332 1 357999999999996 444332
Q ss_pred CcchHHHHHHHHHcccCCCh-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHH
Q 002041 529 DPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 607 (976)
Q Consensus 529 ~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~v 607 (976)
-.++..++.++..+. .++..+--.++.+ ..+...++.++..+..-++. -+.+.|.-.-+++.-+
T Consensus 262 -----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~Ld~Vv~aVL~GL~D-----~DDDVRAVAAetLiPI 326 (800)
T 3oc3_A 262 -----NDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVEDKDGLCRKLVSLLSS-----PDEDIKLLSAELLCHF 326 (800)
T ss_dssp -----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCCHHHHHHHHHHHTTC-----SSHHHHHHHHHHHTTS
T ss_pred -----HHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHHHHHHHHHHHhhcCC-----cccHHHHHHHHHhhhh
Confidence 134444445555553 5888888999988 33333377777776665542 2344444433333222
Q ss_pred HhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhh
Q 002041 608 ITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRY 663 (976)
Q Consensus 608 i~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 663 (976)
+ .| .-+..++..++.++.+.+. ........++.++++++.
T Consensus 327 A--~p---------~~l~~LL~iLWd~L~~LDD-----LSASTgSVMdLLAkL~s~ 366 (800)
T 3oc3_A 327 P--IT---------DSLDLVLEKCWKNIESEEL-----ISVSKTSNLSLLTKIYRE 366 (800)
T ss_dssp C--CS---------STHHHHHHHHHHHHHTCCS-----CCTTHHHHHHHHHHHHHH
T ss_pred c--ch---------hhHHHHHHHHHHHhhhhcc-----cchhhHHHHHHHHHHHcC
Confidence 2 11 1244555566666665421 112223456667776554
No 86
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=39.60 E-value=72 Score=27.88 Aligned_cols=51 Identities=20% Similarity=0.084 Sum_probs=32.7
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 002041 13 ALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRS 66 (976)
Q Consensus 13 ~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ 66 (976)
.+...+|+..|..|-..|.++. .+++......+|.+ .+..||..|+..|.+
T Consensus 49 ~~L~d~~~~vR~~A~~aL~~~~-~~~a~~~L~~~L~d--~~~~VR~~A~~aL~~ 99 (131)
T 1te4_A 49 ESLSNEDWRIRGAAAWIIGNFQ-DERAVEPLIKLLED--DSGFVRSGAARSLEQ 99 (131)
T ss_dssp HGGGCSCHHHHHHHHHHHGGGC-SHHHHHHHHHHHHH--CCTHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHcC--CCHHHHHHHHHHHHH
Confidence 3335667777777777776665 45666666666654 455677777777764
No 87
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=39.58 E-value=1.6e+02 Score=31.20 Aligned_cols=140 Identities=11% Similarity=0.103 Sum_probs=78.4
Q ss_pred CCcchhhHHHHHHHHhhcccCcc------cccchHHHhhhccCCCCc--HHHHHHHHHHHHhcHHHHhhCCCCcchH--H
Q 002041 465 NEWRPAEAALFCIRAISTYVSVV------EAEVMPQVMALLPKLPQQ--PQLLQTVCLTIGAYSKWFDAASSDPSIL--A 534 (976)
Q Consensus 465 ~~w~~~Ea~L~~l~~i~e~~~~~------~~~~l~~l~~~l~~~~~~--~~v~~t~~~~ig~y~~~~~~~p~~~~~l--~ 534 (976)
.+....|.++.++..++...+.. ....++.++..+..-... ..++..++.++...+.++..+++..+.+ .
T Consensus 183 ~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~ 262 (354)
T 3nmw_A 183 KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 262 (354)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHc
Confidence 35566788888888887633222 234566677766432211 2577778888877765443333211000 0
Q ss_pred HHHHHHHcccCCC-hHHHHHHHHHHHHHHH---Hhhhhhh--cCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHH
Q 002041 535 SVLSILTSGMSTS-EDTAAAAALAFRHICD---DCRKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVI 608 (976)
Q Consensus 535 ~~l~~l~~~l~~~-~~v~~~A~~al~~l~~---~~~~~L~--~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi 608 (976)
..++.+..-+.++ .+++..|+.+|.+++. +.+..+. .-++.++ +++.. -+...+.....++..+.
T Consensus 263 g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv----~LL~s-----~~~~i~~~A~~aL~nL~ 333 (354)
T 3nmw_A 263 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLK----NLIHS-----KHKMIAMGSAAALRNLM 333 (354)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHH----TTTTC-----SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHH----HHHhC-----CCHHHHHHHHHHHHHHH
Confidence 1233444444443 3599999999999993 2333343 2233333 33332 23556777777887777
Q ss_pred hcCCh
Q 002041 609 TELPQ 613 (976)
Q Consensus 609 ~~~p~ 613 (976)
..-|.
T Consensus 334 ~~~~~ 338 (354)
T 3nmw_A 334 ANRPA 338 (354)
T ss_dssp TTCCG
T ss_pred cCCHH
Confidence 76553
No 88
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=33.75 E-value=5.7e+02 Score=29.00 Aligned_cols=372 Identities=10% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhcH
Q 002041 446 LKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYS 520 (976)
Q Consensus 446 l~~l~~~l~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~-----~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~ 520 (976)
++.+++.|. +.+-...+.+..++..++..-... +...+|.+++.|.. .++.++..++++++..+
T Consensus 50 i~~LV~~L~---------s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s--~~~~vq~~Aa~AL~nLa 118 (584)
T 3l6x_A 50 LPEVIAMLG---------FRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH--PKKEVHLGACGALKNIS 118 (584)
T ss_dssp HHHHHHHTT---------CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC--SSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHC---------CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC--CCHHHHHHHHHHHHHHH
Q ss_pred H--------HHhhCCCCcchHHHHHHHHHcccCCChHHHHHHHHHHHHHH--HHhhhhhh-cCHHHHHHHHHHHhhccCC
Q 002041 521 K--------WFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHIC--DDCRKKLC-GYLDGLYNVYRTAVNGEGS 589 (976)
Q Consensus 521 ~--------~~~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~--~~~~~~L~-~~l~~ll~~~~~~~~~~~~ 589 (976)
. -+.... -++.++..+.++ .+.+ ++..|+.+|..++ ++.+..+. .-++.+++.+..-..+...
T Consensus 119 ~~~~~~nk~~I~~~G----aIp~LV~LL~s~-~~~~-~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~ 192 (584)
T 3l6x_A 119 FGRDQDNKIAIKNCD----GVPALVRLLRKA-RDMD-LTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWER 192 (584)
T ss_dssp SSSCHHHHHHHHHTT----HHHHHHHHHHHC-CSHH-HHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC-
T ss_pred ccCCHHHHHHHHHcC----CHHHHHHHHcCC-CCHH-HHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccc
Q ss_pred CCC---------CHHhHHHHHHHHHHHHhcCCh-HHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHH
Q 002041 590 LKV---------SAEDSLHLVEALSMVITELPQ-VDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAY 659 (976)
Q Consensus 590 ~~l---------~~~~~~~l~eai~~vi~~~p~-~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 659 (976)
... +.+.+.....++..+...-+. -....-...++.+++.-++..+..... ..+....++-.|..
T Consensus 193 ~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~-----~~~~~enav~aL~N 267 (584)
T 3l6x_A 193 EPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDS-----DSKLVENCVCLLRN 267 (584)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCC-----SCHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCc-----cHHHHHHHHHHHHH
Q ss_pred Hhhh-----------------------cCCcccHHHHH-HHHhHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhhhh--
Q 002041 660 IFRY-----------------------VNHPEAVADAI-QRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFM-- 713 (976)
Q Consensus 660 ~~~~-----------------------~~~~~~~~~~~-~~~~~~l~~ll~~~~~~~~v~e~~~~~~~~~~~~~~~~~-- 713 (976)
+... ...+..+..++ ...++.+..++.. ..+..+.|.++.++.++...-+...
T Consensus 268 Ls~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~-s~~~~v~E~Aa~AL~nL~ag~~~~~~~ 346 (584)
T 3l6x_A 268 LSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKE-SKTPAILEASAGAIQNLCAGRWTYGRY 346 (584)
T ss_dssp HHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHSSCSHHHHH
T ss_pred hhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHcCCccccHH
Q ss_pred -------hhhHHHHHHHHHHHHhhcCCccHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhhhcCcccCCC---CCc
Q 002041 714 -------GITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTS---RPD 783 (976)
Q Consensus 714 -------~~~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~---~pD 783 (976)
..-+|.++.++ .++....+.-+..++.....+......+. ...+.....+|...+.... ..|
T Consensus 347 ~~~~v~~~~glp~Lv~LL-----~s~~~~v~~~A~~aL~nLs~~~~~~~~I~---~g~ip~LV~LL~~~~~~~~~~~s~~ 418 (584)
T 3l6x_A 347 IRSALRQEKALSAIADLL-----TNEHERVVKAASGALRNLAVDARNKELIG---KHAIPNLVKNLPGGQQNSSWNFSED 418 (584)
T ss_dssp HHHHHTSHHHHHHHHHGG-----GCSCHHHHHHHHHHHHHHHTTCSCHHHHH---HHHHHHHHHTSSSSSCSGGGTCCHH
T ss_pred HHHHHHHcCcHHHHHHHH-----cCCCHHHHHHHHHHHHHHhCChhHHHHHH---hCCHHHHHHHhcCCcccccccchHH
Q ss_pred cHHHHHHHHHHHHhhCC---CcccCcCChHHHHHHHHHhcccC--CchhHHHHHHHHHHhhcccCCCCchhhHHHHHHHH
Q 002041 784 VADDCFLLASRCIRYCP---QLFIPSSVFPSLVDCSMIGITVQ--HREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVI 858 (976)
Q Consensus 784 ~~~~~f~l~~~~~~~~p---~~~~~~~~l~~~~~~~~~~l~~~--~~~~~~~~~~fl~~l~~~~~~~~~~~~~~~~~~~~ 858 (976)
++......+..++...| ..+.....++.++++ +... ...+.++|+..+..+.... ..+..+
T Consensus 419 v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~L----L~s~~~~~~v~k~Aa~vL~nl~~~~----------elr~~~ 484 (584)
T 3l6x_A 419 TVISILNTINEVIAENLEAAKKLRETQGIEKLVLI----NKSGNRSEKEVRAAALVLQTIWGYK----------ELRKPL 484 (584)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH----HTCSSSCHHHHHHHHHHHHHHHTSH----------HHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHH----HhCCCCChHHHHHHHHHHHHHHcCH----------HHHHHH
Q ss_pred hhch
Q 002041 859 IPRG 862 (976)
Q Consensus 859 ~~~g 862 (976)
.+.|
T Consensus 485 kk~G 488 (584)
T 3l6x_A 485 EKEG 488 (584)
T ss_dssp HTTT
T ss_pred HHcC
No 89
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=31.18 E-value=2.4e+02 Score=27.67 Aligned_cols=133 Identities=15% Similarity=0.123 Sum_probs=76.3
Q ss_pred CCcchhhHHHHHHHHhhcccCcc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhcHHHHhhCCCCc-chHHHHHH
Q 002041 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDP-SILASVLS 538 (976)
Q Consensus 465 ~~w~~~Ea~L~~l~~i~e~~~~~-----~~~~l~~l~~~l~~~~~~~~v~~t~~~~ig~y~~~~~~~p~~~-~~l~~~l~ 538 (976)
.+-.-.|.+.++|+.++..-+++ +...+|.+++.|.+-+ ++.++..+..++...+. ++... ......+.
T Consensus 64 ~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~-~~~~~e~a~~aL~nLS~----~~~~k~~i~~~~i~ 138 (233)
T 3tt9_A 64 QNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTR-DLETKKQITGLLWNLSS----NDKLKNLMITEALL 138 (233)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHT----SGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHc----ChhhHHHHHhccHH
Confidence 34556788999999998642222 1345788888775322 56677766655544432 11110 12333333
Q ss_pred HHHc-------ccCC----------ChHHHHHHHHHHHHHHH---Hhhhhhhc---CHHHHHHHHHHHhhccCCCCCCHH
Q 002041 539 ILTS-------GMST----------SEDTAAAAALAFRHICD---DCRKKLCG---YLDGLYNVYRTAVNGEGSLKVSAE 595 (976)
Q Consensus 539 ~l~~-------~l~~----------~~~v~~~A~~al~~l~~---~~~~~L~~---~l~~ll~~~~~~~~~~~~~~l~~~ 595 (976)
.|.. |... ...++..|+.+|++++. +.|+.+.. -++.++..++...... +.+..
T Consensus 139 ~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~---~~~~k 215 (233)
T 3tt9_A 139 TLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADY---QPDDK 215 (233)
T ss_dssp HHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTT---CTTCH
T ss_pred HHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcc---cchhH
Confidence 3332 3211 12499999999999974 56777753 3578888877765432 34445
Q ss_pred hHHHHHHHHH
Q 002041 596 DSLHLVEALS 605 (976)
Q Consensus 596 ~~~~l~eai~ 605 (976)
.++..+-++-
T Consensus 216 ~~En~v~~L~ 225 (233)
T 3tt9_A 216 ATENCVCILH 225 (233)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 90
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=29.85 E-value=4.7e+02 Score=28.49 Aligned_cols=49 Identities=18% Similarity=0.017 Sum_probs=25.8
Q ss_pred HHHHHhhchHHHHHHHHHHcccCC----CCCCcccHHHHHHHHHHHhhHHHHH
Q 002041 854 RDSVIIPRGASITRILIASLTGAL----PSSRLETVTYALLALTRAYGVRSLE 902 (976)
Q Consensus 854 ~~~~~~~~g~~lv~~ll~~l~~~~----~~~~~~~~~~~L~~l~~~~~~~~~~ 902 (976)
+-.++..+...++..++.++-... .+........++..+....|..+..
T Consensus 355 i~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d~~lf~~ 407 (449)
T 2npp_B 355 IMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDD 407 (449)
T ss_dssp HHHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCHHHHHH
Confidence 345556666666666666653222 2223333446666666666655444
No 91
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=29.13 E-value=2.6e+02 Score=30.76 Aligned_cols=141 Identities=11% Similarity=0.113 Sum_probs=78.6
Q ss_pred CCcchhhHHHHHHHHhhcccCcc------cccchHHHhhhccCCCCc--HHHHHHHHHHHHhcHHHHhhCCCCcchH--H
Q 002041 465 NEWRPAEAALFCIRAISTYVSVV------EAEVMPQVMALLPKLPQQ--PQLLQTVCLTIGAYSKWFDAASSDPSIL--A 534 (976)
Q Consensus 465 ~~w~~~Ea~L~~l~~i~e~~~~~------~~~~l~~l~~~l~~~~~~--~~v~~t~~~~ig~y~~~~~~~p~~~~~l--~ 534 (976)
.+..-.+.++.+++.++...+.. ....++.++..+..-... ..++..+++++...+.++..+++..+.+ .
T Consensus 299 ~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~ 378 (458)
T 3nmz_A 299 KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 378 (458)
T ss_dssp CSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHc
Confidence 45667788888888887633222 234566677666532211 2578888888887776544444311111 1
Q ss_pred HHHHHHHcccCCC-hHHHHHHHHHHHHHHH---HhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhc
Q 002041 535 SVLSILTSGMSTS-EDTAAAAALAFRHICD---DCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (976)
Q Consensus 535 ~~l~~l~~~l~~~-~~v~~~A~~al~~l~~---~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (976)
..++.+..-+.++ .+++..|+.+|.+++. +.+..+... ..+..+.+++.. -+.+.+.....++..+...
T Consensus 379 G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~--G~I~~Lv~LL~s-----~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 379 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDM--GAVSMLKNLIHS-----KHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp THHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHH--THHHHHHTTTTC-----SSHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHC--CCHHHHHHHHhC-----CCHHHHHHHHHHHHHHHcC
Confidence 2334444555544 3599999999999993 333333211 122233333332 1345677777777777665
Q ss_pred CC
Q 002041 611 LP 612 (976)
Q Consensus 611 ~p 612 (976)
-|
T Consensus 452 ~p 453 (458)
T 3nmz_A 452 RP 453 (458)
T ss_dssp CS
T ss_pred CH
Confidence 44
No 92
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=28.93 E-value=4.3e+02 Score=26.33 Aligned_cols=105 Identities=12% Similarity=0.105 Sum_probs=59.6
Q ss_pred CchHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--HhcChhHHH-HHHHHhhc-CCCchHHHHHHHHHHHHHhhcCCCCCC
Q 002041 1 MELQNTVKEALNALYHHPDDAVRMQADRWLQD--FQHTIDAWQ-VADNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELP 76 (976)
Q Consensus 1 ~~~~~~v~~al~~ly~~~d~~~r~~A~~~L~~--~q~s~~aw~-~~~~lL~~-~~~~~~v~ffaa~~L~~ki~~~w~~l~ 76 (976)
|+..++|.+.++..-..+| +.|-..-...++ +.++|.-.. +...++.- .+.+.++|-|++..+....+.+
T Consensus 11 ~~~~~~v~~lln~A~~~~~-~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k----- 84 (257)
T 3gs3_A 11 ATARAKVVDWCNELVIASP-STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK----- 84 (257)
T ss_dssp HHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-----
T ss_pred ccHHHHHHHHHHHhhhcCc-HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH-----
Confidence 3567788888888854455 455444444444 223444332 44444431 2467789999999998877543
Q ss_pred hhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 002041 77 SEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAV 114 (976)
Q Consensus 77 ~~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~ 114 (976)
.+.....-+.|..++. .....|.++...+.+.++.
T Consensus 85 ~~l~~~~l~~L~~Ll~---d~d~~V~K~~I~~~~~iY~ 119 (257)
T 3gs3_A 85 VELLPHVINVVSMLLR---DNSAQVIKRVIQACGSIYK 119 (257)
T ss_dssp GGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHH
Confidence 2222333333333332 2456777777777777654
No 93
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=28.67 E-value=4.1e+02 Score=26.46 Aligned_cols=136 Identities=9% Similarity=0.018 Sum_probs=81.7
Q ss_pred CcchhhHHHHHHHHhhcccCccc------ccchHHHhhhcc--CCC-CcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHH
Q 002041 466 EWRPAEAALFCIRAISTYVSVVE------AEVMPQVMALLP--KLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASV 536 (976)
Q Consensus 466 ~w~~~Ea~L~~l~~i~e~~~~~~------~~~l~~l~~~l~--~~~-~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~ 536 (976)
+-.-.+.++-++..+.+.+.... ...+..++..|. .+. ..+.++..++.++-.+.+ .. . ....+
T Consensus 68 N~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~---~~-~---~~~~~ 140 (278)
T 4ffb_C 68 NVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCG---LD-T---SITQS 140 (278)
T ss_dssp SHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH---TS-S---SSHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH---hc-C---cHHHH
Confidence 34445666666666665544321 112233333332 132 367888888877765542 11 1 34567
Q ss_pred HHHHHcccCCCh-HHHHHHHHHHHHHHHHhhhhh---hcCHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHhcCC
Q 002041 537 LSILTSGMSTSE-DTAAAAALAFRHICDDCRKKL---CGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 612 (976)
Q Consensus 537 l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~L---~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p 612 (976)
+..+..++.+.. +++..+...+.++.+..+... .+.++.++..+..++.. -+.+.|...++.++.+-..++
T Consensus 141 ~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d-----~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 141 VELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGH-----GDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp HHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTC-----SSHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhC-----CcHHHHHHHHHHHHHHHHHhC
Confidence 788888887642 488899999999888865433 34566677777777653 357788888888887777665
Q ss_pred h
Q 002041 613 Q 613 (976)
Q Consensus 613 ~ 613 (976)
+
T Consensus 216 ~ 216 (278)
T 4ffb_C 216 N 216 (278)
T ss_dssp -
T ss_pred c
Confidence 3
No 94
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=28.51 E-value=3.9e+02 Score=25.41 Aligned_cols=130 Identities=7% Similarity=0.043 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcccccch----HHHhhhcc--CCCCcHHHHHHHHHHH
Q 002041 443 DATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVM----PQVMALLP--KLPQQPQLLQTVCLTI 516 (976)
Q Consensus 443 ~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~~~~~l----~~l~~~l~--~~~~~~~v~~t~~~~i 516 (976)
..++.++.+-+.+.+... ..++..+...+....++.+.=.-.-+.++ |.++..+. ++... .+|.-+..++
T Consensus 39 ~~LlPyf~~fI~~~v~~n---l~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~-~LRd~AA~lL 114 (196)
T 4atg_A 39 QQLVPYFIQHISELILKS---FKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDD-DVRKMSADIV 114 (196)
T ss_dssp TTTHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCH-HHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHH-HHHHHHHHHH
Confidence 346666666666555432 34677777777777777654222223444 44444442 34333 8999999999
Q ss_pred HhcHHHHhh-CCCCcchHHHHHHHHHcccCCCh---HHHHHHHHHHHHHHHHhh-hhhhcCHHHHHHH
Q 002041 517 GAYSKWFDA-ASSDPSILASVLSILTSGMSTSE---DTAAAAALAFRHICDDCR-KKLCGYLDGLYNV 579 (976)
Q Consensus 517 g~y~~~~~~-~p~~~~~l~~~l~~l~~~l~~~~---~v~~~A~~al~~l~~~~~-~~L~~~l~~ll~~ 579 (976)
+..+.-+.. +|. +-+.++..+.+.+.+|. ...--|...+..+-.+.- .-+.|.++.+.+.
T Consensus 115 ~~I~~~~~~~y~~---L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~~~vr~~llP~l~~~~~~ 179 (196)
T 4atg_A 115 KYIYDTYSRSYKT---LAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSKNVVNTVIREHAEEYKRT 179 (196)
T ss_dssp HHHHHHHTTTSTT---HHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHhCccCch---HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHHHHHHHhhhcCHHHHHHH
Confidence 998876554 454 77888888888887653 356667777777766543 3455877776644
No 95
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=27.19 E-value=1.3e+02 Score=31.99 Aligned_cols=98 Identities=10% Similarity=0.159 Sum_probs=63.6
Q ss_pred CCcchhhHHHHHHHHhhcccCcccccchHHHhhhcc-CC-CCcHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHc
Q 002041 465 NEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KL-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTS 542 (976)
Q Consensus 465 ~~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~-~~-~~~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~ 542 (976)
.+....--+.+.+..+++. .++.+ -+.+.+. .+ .++|.+|..+++++|+.. .|+ .++.+...+-+
T Consensus 80 ~d~~lKrLvYLyl~~~~~~----~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~-----~~~---m~~~l~~~lk~ 146 (355)
T 3tjz_B 80 NDPTLRRMCYLTIKEMSCI----AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQIT-----DST---MLQAIERYMKQ 146 (355)
T ss_dssp CCHHHHHHHHHHHHHHTTT----SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHC-----CTT---THHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC----HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCC-----CHH---HHHHHHHHHHH
Confidence 4444444455555555554 12232 2222232 12 136899999999999863 465 88899999999
Q ss_pred ccCCCh-HHHHHHHHHHHHHHHHhhhhhhcCHHH
Q 002041 543 GMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDG 575 (976)
Q Consensus 543 ~l~~~~-~v~~~A~~al~~l~~~~~~~L~~~l~~ 575 (976)
++.+.. -|+..|+.+..+++....+.+..+++.
T Consensus 147 ~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~ 180 (355)
T 3tjz_B 147 AIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNE 180 (355)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 987654 399999999999988776655444443
No 96
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=24.50 E-value=1.2e+02 Score=26.30 Aligned_cols=49 Identities=16% Similarity=0.072 Sum_probs=39.2
Q ss_pred HhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCchHHHHHHHHHHH
Q 002041 14 LYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLR 65 (976)
Q Consensus 14 ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~ 65 (976)
+...+|+..|..|-..|.++. .+++......++.+ .+..||..|+..|.
T Consensus 81 ~L~d~~~~VR~~A~~aL~~~~-~~~a~~~L~~~l~d--~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 81 LLEDDSGFVRSGAARSLEQIG-GERVRAAMEKLAET--GTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHCCTHHHHHHHHHHHHHC-SHHHHHHHHHHTTS--CCTHHHHHHHHHGG
T ss_pred HHcCCCHHHHHHHHHHHHHhC-cHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 335678899999999999886 67888888888864 56789999988764
No 97
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=21.02 E-value=1.1e+03 Score=27.93 Aligned_cols=370 Identities=11% Similarity=0.054 Sum_probs=178.5
Q ss_pred HHHHHHHhcHHHHhhCCCC----cchHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhh------------h--hhhcC
Q 002041 511 TVCLTIGAYSKWFDAASSD----PSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCR------------K--KLCGY 572 (976)
Q Consensus 511 t~~~~ig~y~~~~~~~p~~----~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~------------~--~L~~~ 572 (976)
+....+|-...++..++.. ..+++.++.+- ..+++....-.+-..-|.++++..- . ...+|
T Consensus 144 s~~~~~~~l~~fLP~~~~~~~~~~~w~~~~f~lW-~~~~~s~~wd~~~~~l~~rla~~~~~~~~~~~~~~~~g~idw~~~ 222 (799)
T 1vsy_4 144 TMMAVMPIVTSVVPYHYHIHSKIIDYFPFCYSIW-SSVSANVAIDTHMYDFVGSISKDVHNKILSSEHEKDVVGVEFGEF 222 (799)
T ss_dssp THHHHHHHHHHHSCCCCCSSCCSGGGHHHHHHHB-TTBCSCHHHHHHHHHHHHHHHHHHHHHHSSSCSCTTCCCSCCCSS
T ss_pred hHHHHHHHHHHHcCCCCCchhhhhhhHHHHHHHH-HhcccCchHHHHHHHHHHHHHHHhhhhhcccccccCCCccchHhh
Confidence 4445566555565443221 13667666643 4455443233444445566666532 1 24588
Q ss_pred -------HHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHH-hcCChH---HHHHHHHHhhhHHHHHHHHHHhcCCCc
Q 002041 573 -------LDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVI-TELPQV---DAKKALEMLCLPVVTPLQEIINQGPEI 641 (976)
Q Consensus 573 -------l~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi-~~~p~~---~~~~~l~~ll~p~~~~l~~~~~~~~~~ 641 (976)
++-+++.+.+.+++. .+.. -+.+++..| ..++++ .+..+++++++. ++.... +.+.
T Consensus 223 gift~~q~~~iFt~~lr~l~~~--~~~~------~~~~~a~~IV~sl~~~~~~~~~~~L~~Li~~----iesy~H-PSN~ 289 (799)
T 1vsy_4 223 GIFTDDQMTFMFNRLQGHLRTD--GQIH------SYSRTVKPFVYAINGSKKDRFFEKLVSLAKA----IETFIH-PSNN 289 (799)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTT--CCCS------SHHHHHHHHHTTCCTTSCTTTHHHHHHHHHH----HHHHHS-TTCC
T ss_pred CcccHHHHHHHHHHHHHhccCc--CCcc------chHHHHHHHHHHcCCCCchHHHHHHHHHHHH----HhcccC-CCCC
Confidence 999999998888731 1221 234444443 445442 344555554443 333332 1111
Q ss_pred ccccCcchhhhHHHHHHHH-hhhcC---------Cc-------ccHHHHHHHHhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 002041 642 LQKKHPRDLTVHIDRFAYI-FRYVN---------HP-------EAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKY 704 (976)
Q Consensus 642 ~~~~~~~~~~~~l~~l~~~-~~~~~---------~~-------~~~~~~~~~~~~~l~~ll~~~~~~~~v~e~~~~~~~~ 704 (976)
+. -...+...+..+... .+-++ .| +....+.+.+.|++. +..|.++..+......+++.
T Consensus 290 G~--Wt~~L~~Fl~~L~~~f~kR~~~Er~~~~~~~p~~~~Lt~~~~~~fV~~l~p~~~--~g~fSK~~~~~~~~~~~l~~ 365 (799)
T 1vsy_4 290 GF--WTKPNAKFVHAFIKSYHGRVKYEEDICARGVTNGICLTSFCHEEIVEIFLNIIS--LGSQNKNPDIANYYISCFAY 365 (799)
T ss_dssp ST--THHHHHHHHHHHHHHHHHHHHHHTTTTTTTCCCSSSCCHHHHHHHHHHHHHHHH--HHHTCSSHHHHHHHHHHHHH
T ss_pred Cc--cHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhhcCCHHHHHHHHHHHHHHHH--HHhCcCCcchHHHHHHHHHH
Confidence 10 111222333332222 11111 12 112333444445442 46688899988888888886
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHhh------cCCccHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhhhcCcccC
Q 002041 705 AVRTSKRFMGITIGAILEEIQGLYQQ------HQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEF 778 (976)
Q Consensus 705 ~~~~~~~~~~~~l~~l~~~l~~~~~~------~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~ 778 (976)
..---...-.-.+|.+++.+-.+++. |+....|..+..++...-.+..+...+..++..+ +.-+.
T Consensus 366 La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~~yr~hl~~lL~l~----LpgID----- 436 (799)
T 1vsy_4 366 LLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDKLYRVHITNVLSML----VSKLD----- 436 (799)
T ss_dssp HHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTSTTGGGHHHHHHHHH----HHTCC-----
T ss_pred HHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH----hccCC-----
Confidence 54421101112356666666555433 4445667777777776666655665544444332 22121
Q ss_pred CCCCccHHHHHHHHHHHHhhCCCcccCc--CC--hH----HHHHHHHHhccc--------CCch------------hHHH
Q 002041 779 TSRPDVADDCFLLASRCIRYCPQLFIPS--SV--FP----SLVDCSMIGITV--------QHRE------------ASNS 830 (976)
Q Consensus 779 ~~~pD~~~~~f~l~~~~~~~~p~~~~~~--~~--l~----~~~~~~~~~l~~--------~~~~------------~~~~ 830 (976)
.++|+-.-.-|+|+..+...-|-.=++. +. ++ ..++--...+.. .+.+ -..-
T Consensus 437 ~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~sT~~f~~~ 516 (799)
T 1vsy_4 437 MNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSKTFRVDDELLNNAFKASTTVFQSM 516 (799)
T ss_dssp SSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSSSCCCCTTHHHHHHHHHTSTHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccccccccccHHHHHHHHHHHHhhHHHH
Confidence 2455566667777777777666442221 11 11 011100000000 0110 1123
Q ss_pred HHHHHHHhhcccCCCCchhh----HHHHHHHHhhchHHHHHHHHHHc----ccCCCCCCcccHHHH----HHHHHHHhhH
Q 002041 831 ILTFLSDIFDLAKSCKGEEF----LSVRDSVIIPRGASITRILIASL----TGALPSSRLETVTYA----LLALTRAYGV 898 (976)
Q Consensus 831 ~~~fl~~l~~~~~~~~~~~~----~~~~~~~~~~~g~~lv~~ll~~l----~~~~~~~~~~~~~~~----L~~l~~~~~~ 898 (976)
+..|+.+++..-.+...... ...+..++....+.+...++.-+ ....-....+.++++ +.++.+..|+
T Consensus 517 v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~~if~~~l~k~~~fv~~n~~~~a~~~v~~L~~~~~~a~~~~~P~ 596 (799)
T 1vsy_4 517 LKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDKIFNYFASLLNRNFWSNDSFKEKDPNYELVTIPLAALVRRNNG 596 (799)
T ss_dssp HHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHSCSCCCSSSCCTHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCHH
Confidence 44566666554322111111 12344445555555555554443 334445566777777 8999999998
Q ss_pred HHHHHHHHH
Q 002041 899 RSLEWAKES 907 (976)
Q Consensus 899 ~~~~wl~~~ 907 (976)
.++.++...
T Consensus 597 ~~~~~~p~l 605 (799)
T 1vsy_4 597 LSKELVRTL 605 (799)
T ss_dssp GHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655555543
No 98
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=20.82 E-value=6.2e+02 Score=25.02 Aligned_cols=188 Identities=12% Similarity=0.064 Sum_probs=108.0
Q ss_pred HHHHhcChhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcC-CChHHHHHHHHH
Q 002041 30 LQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHK-GPPKVRTQISIA 108 (976)
Q Consensus 30 L~~~q~s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~~~~~-~~~~v~~kL~~~ 108 (976)
..-.|.+++...+..+||++ .+..++.=|.++|.+.++.. |.......-+.+++-+..... .+.-|.=+-..+
T Consensus 25 ~ela~~~e~~l~~L~~LL~d--kD~~vk~raL~~LeellK~~----~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~ 98 (265)
T 3b2a_A 25 VSLALEDKRALFLILELAGE--DDETTRLRAFVALGEILKRA----DSDLRMMVLERHLDVFINALSQENEKVTIKALRA 98 (265)
T ss_dssp HHHHHHCHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHH
T ss_pred HHHHHhchhHHHHHHHHHhc--cchHHHHHHHHHHHHHHHhc----cccccHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 44567788999999999964 78889999999999998853 444444455555665555332 344455556677
Q ss_pred HHHHHhhcccc--ccCCccchHHHHHhcCCCCC-cHHHHHHHHhhcccccccccccCChhHHHHHHHHHHHhHHHHHHHH
Q 002041 109 VAALAVHISAE--DWGGGGIVNWLRDEMNSHPE-FVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTL 185 (976)
Q Consensus 109 La~l~~~~~~~--~W~~~~~~~~l~~~l~~~~~-~~~~~L~~L~~l~EE~~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l 185 (976)
+-.+.-..+.+ ...- ....+.+.+.+..+ -..-..+.|..+ +. ..-.+.|.+++
T Consensus 99 L~~LLe~vpL~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgkl-------kv--------------~~~~~~V~~~l 155 (265)
T 3b2a_A 99 LGYLVKDVPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKL-------QP--------------LEDSKLVRTYI 155 (265)
T ss_dssp HHHHHTTCCBCHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHC-------CB--------------SCCCHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcC-------Cc--------------ccchHHHHHHH
Confidence 77766554421 1110 22233333332211 111223333333 11 01246677788
Q ss_pred HHhhhhh--HHHHHHHHHHHHhhhccCCCCCcccccchhHHHHHhcCC--CcchHHHHHHHHHHHhhhh
Q 002041 186 TACLHIN--ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLH--SEILSEASVNVISELIHYS 250 (976)
Q Consensus 186 ~~~l~~~--~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~~~~~L~--~~~~~~~a~~~l~~ii~~~ 250 (976)
...+.+. .++..+++.+.+--.+.. ..+.+ .+.++-+=..|+ ++.+++.|++.+-++++.+
T Consensus 156 ~sLl~Skd~~vK~agl~~L~eia~~S~--D~~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 156 NELVVSPDLYTKVAGFCLFLNMLNSSA--DSGHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHGGGCS--SCCCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHhCCChhHHHHHHHHHHHhhcccC--CHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 8887653 577888888887666531 11111 122222222333 6688999999999999875
Done!