BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002042
(976 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LUG9|MD33A_ARATH Mediator of RNA polymerase II transcription subunit 33A
OS=Arabidopsis thaliana GN=MED33A PE=1 SV=1
Length = 1309
Score = 1056 bits (2731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/959 (56%), Positives = 698/959 (72%), Gaps = 25/959 (2%)
Query: 7 QQSLWREVLELTKTAQDRNTDPLTWAIQLSSTLNSAADGDGPTLPSTELAHLLVSHICWD 66
++++W V+ELTK AQ+ DP WA QLSS L A LPSTELA ++VS+ICWD
Sbjct: 6 RRTVWDCVIELTKMAQENCVDPRLWASQLSSNLKFFA----VELPSTELAEVIVSYICWD 61
Query: 67 NHVPITWKFLEKALTLKIVPPSLVLALLSTRVISNRQLHPAAYRLYLEFLTRHAFSFASL 126
N+VPI WKFLE+A+ LK+V P +VLALL+ RV+ R AAYR+YLE L R+ F+
Sbjct: 62 NNVPIVWKFLERAMALKLVSPLVVLALLADRVVPTRSTQQAAYRIYLELLKRNMFTIKDH 121
Query: 127 VNGPNYDKIMNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLLEFAS 186
++GP+Y K+M S+ ++L LS++F L + GVLLVEFVF +V QLLDA+L DEGLLE +
Sbjct: 122 ISGPHYQKVMISVSNILRLSELFDLDTSKPGVLLVEFVFKMVSQLLDAALSDEGLLELSQ 181
Query: 187 DKNFKWPTRPQDMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKVTSRILYLA 246
D + +W + QDMEID + + ++++ E L NT MAIELI EFL+N V +R+LYL
Sbjct: 182 DSSSQWLVKSQDMEIDAPERY-NEKTGSLEKLQSLNTIMAIELIAEFLRNTVIARLLYLV 240
Query: 247 HMNMPSHWGGFIERLRLLALKSAALRNSKVITPEALLQLASDTRGDLGRKSKTAPQKECH 306
N S W F+++++LL S+AL++SKV+ LLQL S+ R SK ++ +
Sbjct: 241 SSNRASKWHEFVQKVQLLGENSSALKHSKVLNSGDLLQLISNRRFGYSYDSKVTSARKSN 300
Query: 307 AVAFPGSLMSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVN 366
A+ GSL S AG C+G S S+LWLP+DL EDAMDG QV TSA+EI+TGL K L+ +N
Sbjct: 301 AIVDFGSLSSYAGLCHGASLSSLWLPLDLVFEDAMDGYQVNPTSAIEIITGLAKTLKEIN 360
Query: 367 GTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEEESELI 426
G+TWHDTFLGLWIAALRL+QRERDP EGP+PR+D+ LCM L + L VA++IEE + E +
Sbjct: 361 GSTWHDTFLGLWIAALRLVQRERDPIEGPIPRLDTRLCMSLCIVPLVVANLIEEGKYESV 420
Query: 427 DETEQSPSNLPKDKQAPGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFIS 486
E + R DLVTSLQ+LGDF +L PP V S AN+AA KAI+F+S
Sbjct: 421 ME----------------KLRDDLVTSLQVLGDFPGLLAPPKCVVSAANKAATKAILFLS 464
Query: 487 GLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPC 546
G VG ++ ++M + +C GNMRHLIVEACIARN+LD SAY WPGYVN NQ+P
Sbjct: 465 GGNVGKSCFDVINMKDMPVNCSGNMRHLIVEACIARNILDMSAYSWPGYVNGR-INQIPQ 523
Query: 547 SIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLC 606
S+ ++ WSS +KG+PL ++ N LV PASSLAE+EK++E+AV GSDDEKI AATVLC
Sbjct: 524 SLPNEVPCWSSFVKGAPLNAAMVNTLVSVPASSLAELEKLFEVAVKGSDDEKISAATVLC 583
Query: 607 GASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIF 666
GASL RGW++QE+T+ ++ +LLSPPVPADYS +E+HLIGYA +LN ++VGI SVD IQIF
Sbjct: 584 GASLTRGWNIQEHTVEYLTRLLSPPVPADYSRAENHLIGYACMLNVVIVGIGSVDSIQIF 643
Query: 667 SLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPP 726
SLHG VP LA +LMPICE FGS P+ SWTL SGE S Y+VFSNAFT+L++LWRF+ PP
Sbjct: 644 SLHGMVPQLACSLMPICEEFGSYTPSVSWTLPSGEAISAYSVFSNAFTLLLKLWRFNHPP 703
Query: 727 LEQLTVDMPLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIK-FSTDPIFMDS 785
+E D+P V SQL+PE+LL VRNS L S +D+ + KR S+ + S P+F+DS
Sbjct: 704 IEHGVGDVPTVGSQLTPEHLLSVRNSYLVSSEILDRDRNR-KRLSEVARAASCQPVFVDS 762
Query: 786 FPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSGTPLTSATSGSTNS 845
FPKLK WYRQ++ CIA+TL+GL HG+ VH V+ALL F K+ S T L SG+++S
Sbjct: 763 FPKLKVWYRQHQRCIAATLSGLTHGSPVHQTVEALLNMTFGKVRGSQT-LNPVNSGTSSS 821
Query: 846 SGSGLEDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLA 905
SG+ ED +I+ + PAWDIL+A P+V+DAAL AC HGRLSPR+LATGLK+L+D LPA+LA
Sbjct: 822 SGAASEDSNIRPEFPAWDILKAVPYVVDAALTACTHGRLSPRQLATGLKDLADFLPASLA 881
Query: 906 TVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGISS 964
T+VSYFSAEV+RG+WKP FMNG DWPSPATNLS++E+ I KILA TGVD+P++A G SS
Sbjct: 882 TIVSYFSAEVSRGVWKPVFMNGVDWPSPATNLSTVEEYITKILATTGVDIPSLAPGGSS 940
>sp|F4IN69|MD33B_ARATH Mediator of RNA polymerase II transcription subunit 33B
OS=Arabidopsis thaliana GN=MED33B PE=1 SV=1
Length = 1275
Score = 1035 bits (2677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 567/988 (57%), Positives = 693/988 (70%), Gaps = 101/988 (10%)
Query: 1 MAVNHQQQSLWREVLELTKTAQDRNTDPLTWAIQLSSTLNSAADGDGPTLPSTELAHLLV 60
MA + Q SLW V L ++AQ++N DPL WA+QL TL SA G +LPS +LA LV
Sbjct: 1 MAPSEFQPSLWESVTSLIRSAQEKNVDPLHWALQLRLTLASA----GISLPSPDLAQFLV 56
Query: 61 SHICWDNHVPITWKFLEKALTLKIVPPSLVLALLSTRVISNRQLHPAAYRLYLEFLTRHA 120
+HI W+NH P++WK LEKA+++ IVPP LVLALLS RVI NR+LHPAAYRLY+E L RHA
Sbjct: 57 THIFWENHSPLSWKLLEKAISVNIVPPLLVLALLSPRVIPNRKLHPAAYRLYMELLKRHA 116
Query: 121 FSFASLVNGPNYDKIMNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEG 180
FSF L+ P Y K MNSIDD+L+LS+ FG++ E G +L+ FVFS+VW+LLDASLD+EG
Sbjct: 117 FSFMPLIRAPGYHKTMNSIDDILHLSETFGVQDQEPGSILLAFVFSIVWELLDASLDEEG 176
Query: 181 LLEFASDKNFKWPTRPQDMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKVTS 240
LLE S+K KWP+ P DM++DG++ + KR+E+H+ L +ANT MAIELI EFLQNKVTS
Sbjct: 177 LLELTSNKRSKWPSSPHDMDLDGLENSV-KRNENHDALEKANTEMAIELIQEFLQNKVTS 235
Query: 241 RILYLAHMNMPSHWGGFIERLRLLALKSAALRNSKVITPEALLQLASDTRGDLGRKSKTA 300
RIL+LA NM +SKT
Sbjct: 236 RILHLASQNM---------------------------------------------ESKTI 250
Query: 301 PQKECHAVAFPGSLMSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVK 360
P+ E HA+ GS ++L TS SALWLPIDLF ED MDGTQ AA SAVE LTGLVK
Sbjct: 251 PRGEFHAIVSSGSKLAL------TSDSALWLPIDLFFEDIMDGTQAAAASAVENLTGLVK 304
Query: 361 ALQVVNGTTWHDTFLG-------------------LWIAALRLLQRERDPSEGPVPRIDS 401
ALQ N T+WHD FL ++ L +L ERDP EGPVPR D+
Sbjct: 305 ALQAANSTSWHDAFLALWLAALRLVQRENLCLRYCFFMHMLEILSEERDPIEGPVPRTDT 364
Query: 402 SLCMVLSVTTLTVADIIEEEESELIDETEQSPSNLPKDKQAPGRRRKDLVTSLQLLGDFE 461
LC++LSVT L VA+IIEEEES+ ID+T SPSN K+K+ G+ R+ L+ SLQ LGD+E
Sbjct: 365 FLCVLLSVTPLAVANIIEEEESQWIDQTSSSPSNQWKEKK--GKCRQGLINSLQQLGDYE 422
Query: 462 DMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIA 521
+LTPP V+S+ANQAAAKAIMFISG+T NG YE+ SM+ A+ C C
Sbjct: 423 SLLTPPRSVQSVANQAAAKAIMFISGITNSNGSYENTSMSESASGC-----------CKV 471
Query: 522 R-NLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSL 580
R +L ++ G + C+I S WS +MKGSPLTPSLTN+L+ TPASSL
Sbjct: 472 RFSLFTLKMFVVMGVY-------LLCNI----SCWSLVMKGSPLTPSLTNSLITTPASSL 520
Query: 581 AEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSE 640
AEIEK+YE+A GS+DEKI A++LCGASL RGWS+QE+ I+FI+ LLSPP PAD SGS
Sbjct: 521 AEIEKMYEVATTGSEDEKIAVASILCGASLFRGWSIQEHVIIFIVTLLSPPAPADLSGSY 580
Query: 641 SHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSG 700
SHLI A LN LLVGIS +DC+ IFSLHG VPLLA ALMPICE FGS +PN +WTL +G
Sbjct: 581 SHLINSAPFLNVLLVGISPIDCVHIFSLHGVVPLLAGALMPICEAFGSGVPNITWTLPTG 640
Query: 701 EEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLASFGTS 760
E S +AVFS AFT+L+RLWRF PPL+ + D+P V Q SPEYLLLVRN +L FG S
Sbjct: 641 ELISSHAVFSTAFTLLLRLWRFDHPPLDYVLGDVPPVGPQPSPEYLLLVRNCRLECFGKS 700
Query: 761 PKDQMKSKRFSKNIKFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDAL 820
PKD+M +RFSK I S DPIFMDSFP+LK+WYRQ++EC+AS L+ L G+ VH IVD+L
Sbjct: 701 PKDRMARRRFSKVIDISVDPIFMDSFPRLKQWYRQHQECMASILSELKTGSPVHHIVDSL 760
Query: 821 LTKMFRKINRSGTPLTSATSGSTNSSGSGLEDVSIKLKVPAWDILEATPFVLDAALAACA 880
L+ MF+K N+ G+ + +SGS++ S SG +D S +LK+PAWDILEA PFVLDAAL ACA
Sbjct: 761 LSMMFKKANKGGSQSLTPSSGSSSLSTSGGDDSSDQLKLPAWDILEAAPFVLDAALTACA 820
Query: 881 HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSI 940
HG LSPRELATGLK L+D LPATL T+VSYFS+EVTRGLWKP MNGTDWPSPA NL+S+
Sbjct: 821 HGSLSPRELATGLKILADFLPATLGTMVSYFSSEVTRGLWKPVSMNGTDWPSPAANLASV 880
Query: 941 EQQIKKILAATGVDVPTV-AVGISSYCL 967
EQQI+KILAATGVDVP + A GIS+ L
Sbjct: 881 EQQIEKILAATGVDVPRLPADGISAATL 908
>sp|B0CL02|SYC_BRUSI Cysteine--tRNA ligase OS=Brucella suis (strain ATCC 23445 / NCTC
10510) GN=cysS PE=3 SV=1
Length = 506
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 881 HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 934
+ R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 163 NARKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
>sp|Q8YG89|SYC_BRUME Cysteine--tRNA ligase OS=Brucella melitensis biotype 1 (strain 16M
/ ATCC 23456 / NCTC 10094) GN=cysS PE=3 SV=1
Length = 506
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 881 HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 934
+ R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 163 NARKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
>sp|C0RI19|SYC_BRUMB Cysteine--tRNA ligase OS=Brucella melitensis biotype 2 (strain ATCC
23457) GN=cysS PE=3 SV=1
Length = 506
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 881 HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 934
+ R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 163 NARKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
>sp|Q57E65|SYC_BRUAB Cysteine--tRNA ligase OS=Brucella abortus biovar 1 (strain 9-941)
GN=cysS PE=3 SV=1
Length = 506
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 881 HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 934
+ R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 163 NARKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
>sp|Q2YN22|SYC_BRUA2 Cysteine--tRNA ligase OS=Brucella abortus (strain 2308) GN=cysS
PE=3 SV=1
Length = 506
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 881 HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 934
+ R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 163 NARKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
>sp|B2S4T7|SYC_BRUA1 Cysteine--tRNA ligase OS=Brucella abortus (strain S19) GN=cysS PE=3
SV=1
Length = 506
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 881 HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 934
+ R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 163 NARKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
>sp|Q8G1N5|SYC_BRUSU Cysteine--tRNA ligase OS=Brucella suis biovar 1 (strain 1330)
GN=cysS PE=3 SV=1
Length = 506
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 881 HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 934
+ R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 163 NARKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
>sp|A9MA50|SYC_BRUC2 Cysteine--tRNA ligase OS=Brucella canis (strain ATCC 23365 / NCTC
10854) GN=cysS PE=3 SV=1
Length = 506
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 881 HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 934
+ R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 163 NARKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
>sp|A5VPL3|SYC_BRUO2 Cysteine--tRNA ligase OS=Brucella ovis (strain ATCC 25840 / 63/290
/ NCTC 10512) GN=cysS PE=3 SV=1
Length = 506
Score = 35.4 bits (80), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 23/52 (44%)
Query: 883 RLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 934
R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 165 RKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 345,915,020
Number of Sequences: 539616
Number of extensions: 14152298
Number of successful extensions: 34332
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 34307
Number of HSP's gapped (non-prelim): 20
length of query: 976
length of database: 191,569,459
effective HSP length: 127
effective length of query: 849
effective length of database: 123,038,227
effective search space: 104459454723
effective search space used: 104459454723
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)