Query 002042
Match_columns 976
No_of_seqs 43 out of 45
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 09:54:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002042.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002042hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dw9_A Cyanate lyase; cyanate 69.9 0.94 3.2E-05 44.8 0.0 91 55-150 38-135 (156)
2 2i5o_A DNA polymerase ETA; zin 31.0 24 0.00081 27.9 2.0 21 606-627 15-36 (39)
3 3a1y_A 50S ribosomal protein P 30.7 24 0.00082 29.6 2.2 17 941-957 19-35 (58)
4 3e2u_E CAP-Gly domain-containi 27.3 11 0.00039 30.5 -0.3 7 682-688 25-31 (42)
5 2gut_A ARC/mediator, positive 27.2 38 0.0013 30.4 2.9 34 923-957 2-35 (77)
6 2lbf_A 60S acidic ribosomal pr 26.0 32 0.0011 29.8 2.2 17 941-957 25-41 (69)
7 2hqh_E Restin; beta/BETA struc 22.9 15 0.00052 27.2 -0.3 7 682-688 8-14 (26)
8 2pzo_E CAP-Gly domain-containi 22.1 16 0.00056 29.6 -0.3 7 682-688 25-31 (42)
9 2lbf_B 60S acidic ribosomal pr 20.6 44 0.0015 29.1 2.0 17 941-957 21-37 (70)
10 3bee_A Putative YFRE protein; 18.3 3.5E+02 0.012 23.1 7.2 82 52-144 5-91 (93)
No 1
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=69.86 E-value=0.94 Score=44.84 Aligned_cols=91 Identities=22% Similarity=0.244 Sum_probs=63.2
Q ss_pred HHHHHHHhhhccCCCcchHHHHHHHHhcCCCChHHHHHhhhcccccCcc-------cchhHHHHHHHHhhhccccccccc
Q 002042 55 LAHLLVSHICWDNHVPITWKFLEKALTLKIVPPSLVLALLSTRVISNRQ-------LHPAAYRLYLEFLTRHAFSFASLV 127 (976)
Q Consensus 55 LA~~LVs~lCfdnn~ps~WKfLe~AlssrLv~PLhvLALLSsRVIP~R~-------~qPeAYRLYLELL~r~aFs~~~~i 127 (976)
+.+..+..+|...+.|+ +...++.-. -|=-|--.++.| .++|.|- .-|.-||+| |.+..|+.+++..|
T Consensus 38 ~S~v~vtaa~lGQ~~ls-~e~A~kLa~-~LgL~~e~~~~l--~~~P~rg~~~~~~ptdP~iYR~y-E~v~vYG~~~K~li 112 (156)
T 1dw9_A 38 LAEAFVTAALLGQQALP-ADAARLVGA-KLDLDEDSILLL--QMIPLRGCIDDRIPTDPTMYRFY-EMLQVYGTTLKALV 112 (156)
T ss_dssp SCHHHHHHHHTTSSCCC-HHHHHHHHH-HTTCCHHHHHHT--TSBCCCCCCSSSSCCSHHHHHHH-HHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHcCCCCCC-HHHHHHHHH-HhCcCHHHHHHH--hcCCcCCCCCCCCCCCCeehhHH-HHHHHhhHHHHHHH
Confidence 44677777788777776 454444332 233344445666 4678884 568899999 99999999999888
Q ss_pred CCCchhHHHhcHHHHhccccccC
Q 002042 128 NGPNYDKIMNSIDDVLNLSQIFG 150 (976)
Q Consensus 128 ~~pn~~kimkSID~~L~LS~~~g 150 (976)
+-.-=|-||..||=-+.+-+.-+
T Consensus 113 ~E~FGDGIMSAIdF~~~v~k~~d 135 (156)
T 1dw9_A 113 HEKFGDGIISAINFKLDVKKVAD 135 (156)
T ss_dssp HHHTCSEEEEEEEEEEEEEEEEC
T ss_pred HHHcCcceEeeeeeeeeeEeecC
Confidence 76655888988886666655443
No 2
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=30.98 E-value=24 Score=27.90 Aligned_cols=21 Identities=29% Similarity=0.746 Sum_probs=18.8
Q ss_pred cccccccccchhhHH-HHHHHHh
Q 002042 606 CGASLVRGWSVQENT-ILFIIKL 627 (976)
Q Consensus 606 CGASL~RGWniQEh~-v~~vvkL 627 (976)
||..+-- |..|||. -||..+|
T Consensus 15 C~~~i~~-~~~~EH~D~H~A~~L 36 (39)
T 2i5o_A 15 CGSLVPV-WDMPEHMDYHFALEL 36 (39)
T ss_dssp TCCEEEG-GGHHHHHHHHHHHHH
T ss_pred ccCcCCc-ccccchhhHHHHHHH
Confidence 8988876 9999999 9998887
No 3
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=30.75 E-value=24 Score=29.58 Aligned_cols=17 Identities=35% Similarity=0.624 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhCCCCCc
Q 002042 941 EQQIKKILAATGVDVPT 957 (976)
Q Consensus 941 e~~ik~ILAatGVdvP~ 957 (976)
++.||+||.++||+|-.
T Consensus 19 ~~~I~~il~aaGveve~ 35 (58)
T 3a1y_A 19 EENLKAVLQAAGVEPEE 35 (58)
T ss_dssp HHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHcCCCccH
Confidence 78899999999999854
No 4
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=27.30 E-value=11 Score=30.52 Aligned_cols=7 Identities=71% Similarity=1.621 Sum_probs=5.5
Q ss_pred hhhhhcC
Q 002042 682 ICEVFGS 688 (976)
Q Consensus 682 iCEvFGS 688 (976)
+|||||-
T Consensus 25 ~CEVFGH 31 (42)
T 3e2u_E 25 ICEMFGH 31 (42)
T ss_dssp TTTEESS
T ss_pred cceeccc
Confidence 6889983
No 5
>2gut_A ARC/mediator, positive cofactor 2 glutamine/Q- rich-associated protein; KIX, 3 helical bundle, transcription; NMR {Homo sapiens}
Probab=27.17 E-value=38 Score=30.42 Aligned_cols=34 Identities=29% Similarity=0.408 Sum_probs=24.9
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHhhCCCCCc
Q 002042 923 AFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPT 957 (976)
Q Consensus 923 ~~mNGtdWPSPaanl~~ve~~ik~ILAatGVdvP~ 957 (976)
|+=++.||+||+--. .|=.+|.+.++..|+..|.
T Consensus 2 ~~~~~~dW~s~~FRq-~vi~~i~~a~~~~G~~~~k 35 (77)
T 2gut_A 2 AMGQETDWRSTAFRQ-KLVSQIEDAMRKAGVAHSK 35 (77)
T ss_dssp CCSCCSCTTSHHHHH-HHHHHHHHHHHHHCCCCSS
T ss_pred CCCccccccCHHHHH-HHHHhhHHHHHHhCCCCCC
Confidence 455789999998754 3446778888889987543
No 6
>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens}
Probab=25.98 E-value=32 Score=29.85 Aligned_cols=17 Identities=35% Similarity=0.663 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhCCCCCc
Q 002042 941 EQQIKKILAATGVDVPT 957 (976)
Q Consensus 941 e~~ik~ILAatGVdvP~ 957 (976)
++.||+||.++||+|-.
T Consensus 25 a~~I~~il~AaGveve~ 41 (69)
T 2lbf_A 25 EDKINALIKAAGVNVEP 41 (69)
T ss_dssp HHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHHHcCCCccH
Confidence 68899999999999954
No 7
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=22.89 E-value=15 Score=27.24 Aligned_cols=7 Identities=71% Similarity=1.621 Sum_probs=6.0
Q ss_pred hhhhhcC
Q 002042 682 ICEVFGS 688 (976)
Q Consensus 682 iCEvFGS 688 (976)
+||+||-
T Consensus 8 ~CE~FGH 14 (26)
T 2hqh_E 8 ICEMFGH 14 (26)
T ss_dssp TTTEESS
T ss_pred HHHHhCc
Confidence 7999984
No 8
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=22.07 E-value=16 Score=29.61 Aligned_cols=7 Identities=71% Similarity=1.621 Sum_probs=5.8
Q ss_pred hhhhhcC
Q 002042 682 ICEVFGS 688 (976)
Q Consensus 682 iCEvFGS 688 (976)
||||||-
T Consensus 25 ~CEvFGH 31 (42)
T 2pzo_E 25 ICEMFGH 31 (42)
T ss_dssp TTTEESS
T ss_pred cccccCc
Confidence 7999984
No 9
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=20.56 E-value=44 Score=29.14 Aligned_cols=17 Identities=35% Similarity=0.655 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhCCCCCc
Q 002042 941 EQQIKKILAATGVDVPT 957 (976)
Q Consensus 941 e~~ik~ILAatGVdvP~ 957 (976)
++.||+||.++||+|-.
T Consensus 21 a~~I~~il~aaGvevd~ 37 (70)
T 2lbf_B 21 AKDIKKILDSVGIEADD 37 (70)
T ss_dssp HHHHHHHHHTTTCCCCT
T ss_pred HHHHHHHHHHcCCCccH
Confidence 67899999999999854
No 10
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=18.26 E-value=3.5e+02 Score=23.06 Aligned_cols=82 Identities=13% Similarity=0.051 Sum_probs=55.1
Q ss_pred cHHHHHHHHHhhhccCC---CcchHHHHHHHHhcCCC--ChHHHHHhhhcccccCcccchhHHHHHHHHhhhcccccccc
Q 002042 52 STELAHLLVSHICWDNH---VPITWKFLEKALTLKIV--PPSLVLALLSTRVISNRQLHPAAYRLYLEFLTRHAFSFASL 126 (976)
Q Consensus 52 S~eLA~~LVs~lCfdnn---~ps~WKfLe~AlssrLv--~PLhvLALLSsRVIP~R~~qPeAYRLYLELL~r~aFs~~~~ 126 (976)
.+++--.+...+++.++ ++..-+++++|+...=- -.+.+|+...-+ +..+.+|.+.|-.+|.+ ..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~----~g~y~~Ai~~w~~~l~~------~p 74 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI----SFRFQEAIDTWVLLLDS------ND 74 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTC------CC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh------CC
Confidence 34544444444555555 67788888888875433 334445444433 67788999999999986 23
Q ss_pred cCCCchhHHHhcHHHHhc
Q 002042 127 VNGPNYDKIMNSIDDVLN 144 (976)
Q Consensus 127 i~~pn~~kimkSID~~L~ 144 (976)
. .|++..|.++|..+-+
T Consensus 75 ~-~~~~~~i~~~I~~A~~ 91 (93)
T 3bee_A 75 P-NLDRVTIIESINKAKK 91 (93)
T ss_dssp T-TCCHHHHHHHHHHHHH
T ss_pred C-CccHHHHHHHHHHHHh
Confidence 3 7899999999998753
Done!