Citrus Sinensis ID: 002043

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970------
MQNSDQALPVKDRRPDALGDLKIIPDEIICSILEHLTPRDVGRLACVSSVMYIFCNEEPLWMSLCLKKASGVLQYKGSWKKTALHLEDPPIEYDESCTRLLHFDGFYSPFLYRRYYRCHTVLDGFSFDSQLVKRKKIVTREEFDRECAEEPILLSGLADTWPARNTWTIDQLLTRYGDTAFRISQRSVRSISMKFKDYVAYMNVQHDEDPLYIFDYKFGENAQGLLEDYRVPDLFQEDLFNVLDGDMRPSYRWVIIGPQRSGASWHVDPALTSAWNTLLCGRKRWALYPPGRVPLGVTVHVNEDDGDVNIETPSSLEWWLDFYPLLADDDKPIECTQLPGETIVVPSGWWHCILNLETTIAVTQNFVDSKNFEFVCLDFAPGYRHKGVCRAGLLALEEESLEGGGKNTSAGDHDMSYPDLTRKEKRVRVNRCGEIQNHEEDTNGVSKNYNSSKQDFSYDINFLAKFLDEDRDHYNFPWSSGNCTGKREMREWLYKLWVGKPEMRELIWKGACLALNAGKWLELLEEICNFHKLPTLTAEEKLPVGNGSNPVYLMADCVVKIFVEGGFESSIYGLGTELEFYSLLAKVNSPLKNYIPDVLASGILYVENGSYTIVPWDGKGVLDVIGKCNLTLLNCKQEEFPFGIWSKKQFEYRSAWMSVSKLSTSDGCNRIWPYIITKRCKGKMFAQLRDALSGEDVLNLASFLGEQLRNLHLLPCPPFNESSLSDKLKTEPPFNNGFVEDVVDTSSVPAEWEIFIRTLARKKKNLVNRLTAWGHPIPKALIDKVDEYIPDDFVKLLDIYQDENGLNKVCKPCSWIHSDIMDDNVYMEPCCASSRSNGNAADTGPMVNGSINGYDEFGEAKSWHCSHIIDFSNLSIGDPIYDVIPIHLDIFRGDSSLFKQFLESYKLPLVRRMQQHGSGGGKFSRLSYHAMCYCILHDDNVLGTIFSTWKELRTAKSWEEVEMTVWGELNNYKGYA
cccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccCEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccHHHHHHHHcccEEEEEEccccEEEEEHHHHHHHHHcccccccccccccccccccHHHHccccccccccccccccccccccccCEEEEEcccccccccCCccccccccEEEEEEEEEEEEccccccccccccccccccccccccccccHHHHHHcccccccccccEEEEEccccEEEEcccccEEEEEccccEEEEEccccccccHHHHHHHcccccccHHHHHHHHHHcccHcccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccEEEHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccccccccccccccccEEEEcccEEEEEEEcccccccccccHHHHHHHHHHHcccccccccHHHHHcccEEECcccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccHHHHHHHcccccccccccccccccccccccccCEEECcccccccccccccccccccccccccccccccccccccEEEEccccccccccccHHHHHHHHHcccHHHHHHHHHHccccccccccccccccccccccHHHHEEEEEcccccHHHHHHHcHHHHHccccHHHHHHHHHHHHccccccc
******ALPVKDRRPDALGDLKIIPDEIICSILEHLTPRDVGRLACVSSVMYIFCNEEPLWMSLCLKKASGVLQYKGSWKKTALHLEDPPIEYDESCTRLLHFDGFYSPFLYRRYYRCHTVLDGFSFDSQLVKRKKIVTREEFDRECAEEPILLSGLADTWPARNTWTIDQLLTRYGDTAFRISQRSVRSISMKFKDYVAYMNVQHDEDPLYIFDYKFGENAQGLLEDYRVPDLFQEDLFNVLDGDMRPSYRWVIIGPQRSGASWHVDPALTSAWNTLLCGRKRWALYPPGRVPLGVTVHVNEDDGDVNIETPSSLEWWLDFYPLLADDDKPIECTQLPGETIVVPSGWWHCILNLETTIAVTQNFVDSKNFEFVCLDFAPGYRHKGVCRAGLLALEEESLEGGGKNTSAGDHDMSYPDLTRKEKRVR***************GVSKNYNSSKQDFSYDINFLAKFLDEDRDHYNFPWSSGNCTGKREMREWLYKLWVGKPEMRELIWKGACLALNAGKWLELLEEICNFHKLPTLTAEEKLPVGNGSNPVYLMADCVVKIFVEGGFESSIYGLGTELEFYSLLAKVNSPLKNYIPDVLASGILYVENGSYTIVPWDGKGVLDVIGKCNLTLLNCKQEEFPFGIWSKKQFEYRSAWMS*******DGCNRIWPYIITKRCKGKMFAQLRDALSGEDVLNLASFLGEQLRNLHLLPCPPFNESS**********FNNGFVEDVVDTSSVPAEWEIFIRTLARKKKNLVNRLTAWGHPIPKALIDKVDEYIPDDFVKLLDIYQDENGLNKVCKPCSWIHSDIMDDNVYMEPCCA**************VNGSINGYDEFGEAKSWHCSHIIDFSNLSIGDPIYDVIPIHLDIFRGDSSLFKQFLESYKLPLVRRM********KFSRLSYHAMCYCILHDDNVLGTIFSTWKELRTAKSWEEVEMTVWGELNNYK***
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MQNSDQALPVKDRRPDALGDLKIIPDEIICSILEHLTPRDVGRLACVSSVMYIFCNEEPLWMSLCLKKASGVLQYKGSWKKTALHLEDPPIEYDESCTRLLHFDGFYSPFLYRRYYRCHTVLDGFSFDSQLVKRKKIVTREEFDRECAEEPILLSGLADTWPARNTWTIDQLLTRYGDTAFRISQRSVRSISMKFKDYVAYMNVQHDEDPLYIFDYKFGENAQGLLEDYRVPDLFQEDLFNVLDGDMRPSYRWVIIGPQRSGASWHVDPALTSAWNTLLCGRKRWALYPPGRVPLGVTVHVNEDDGDVNIETPSSLEWWLDFYPLLADDDKPIECTQLPGETIVVPSGWWHCILNLETTIAVTQNFVDSKNFEFVCLDFAPGYRHKGVCRAGLLALEEESLEGGGKNTSAGDHDMSYPDLTRKEKRVRVNRCGEIQNHEEDTNGVSKNYNSSKQDFSYDINFLAKFLDEDRDHYNFPWSSGNCTGKREMREWLYKLWVGKPEMRELIWKGACLALNAGKWLELLEEICNFHKLPTLTAEEKLPVGNGSNPVYLMADCVVKIFVEGGFESSIYGLGTELEFYSLLAKVNSPLKNYIPDVLASGILYVENGSYTIVPWDGKGVLDVIGKCNLTLLNCKQEEFPFGIWSKKQFEYRSAWMSVSKLSTSDGCNRIWPYIITKRCKGKMFAQLRDALSGEDVLNLASFLGEQLRNLHLLPCPPFNESSLSDKLKTEPPFNNGFVEDVVDTSSVPAEWEIFIRTLARKKKNLVNRLTAWGHPIPKALIDKVDEYIPDDFVKLLDIYQDENGLNKVCKPCSWIHSDIMDDNVYMEPCCASSRSNGNAADTGPMVNGSINGYDEFGEAKSWHCSHIIDFSNLSIGDPIYDVIPIHLDIFRGDSSLFKQFLESYKLPLVRRMQQHGSGGGKFSRLSYHAMCYCILHDDNVLGTIFSTWKELRTAKSWEEVEMTVWGELNNYKGYA

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
F-box protein At1g78280 probableQ9M9E8

Prediction of Enzyme Commission Number ?

No confident prediction of EC number!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3K2O, chain A
Confidence level:very confident
Coverage over the Query: 129-383
View the alignment between query and template
View the model in PyMOL
Template: 3D8C, chain A
Confidence level:very confident
Coverage over the Query: 107-368
View the alignment between query and template
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Template: 3F7W, chain A
Confidence level:confident
Coverage over the Query: 525-602,672-687,699-798,809-830,864-925
View the alignment between query and template
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Template: 2Q83, chain A
Confidence level:confident
Coverage over the Query: 523-612,668-733,745-830,864-907
View the alignment between query and template
View the model in PyMOL
Template: 1NW1, chain A
Confidence level:confident
Coverage over the Query: 810-829,865-887
View the alignment between query and template
View the model in PyMOL
Template: 3L2O, chain B
Confidence level:confident
Coverage over the Query: 19-70
View the alignment between query and template
View the model in PyMOL
Template: 3F66, chain A
Confidence level:probable
Coverage over the Query: 944-974
View the alignment between query and template
View the model in PyMOL