Query 002044
Match_columns 976
No_of_seqs 530 out of 4190
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 15:14:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002044.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002044hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 8.7E-86 1.9E-90 781.0 40.3 643 2-687 1-675 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.8E-62 6.1E-67 615.6 45.8 605 169-838 179-843 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1E-41 2.2E-46 369.0 13.5 267 179-452 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 3.8E-25 8.2E-30 280.4 15.3 409 529-970 165-592 (968)
5 PLN00113 leucine-rich repeat r 99.9 7.2E-25 1.6E-29 277.9 17.5 407 528-970 118-568 (968)
6 KOG0444 Cytoskeletal regulator 99.8 1.1E-22 2.4E-27 217.6 -5.8 343 526-934 30-376 (1255)
7 KOG4194 Membrane glycoprotein 99.8 2.3E-20 5.1E-25 199.1 3.3 358 551-956 78-446 (873)
8 KOG0444 Cytoskeletal regulator 99.8 1.3E-21 2.9E-26 209.4 -6.8 336 526-928 53-394 (1255)
9 KOG0472 Leucine-rich repeat pr 99.8 3.7E-22 8.1E-27 203.8 -11.5 238 529-808 69-308 (565)
10 PLN03210 Resistant to P. syrin 99.8 9.7E-18 2.1E-22 212.6 18.8 337 573-935 551-908 (1153)
11 KOG4194 Membrane glycoprotein 99.8 3E-19 6.4E-24 190.8 3.4 333 530-928 104-447 (873)
12 KOG0472 Leucine-rich repeat pr 99.7 1.5E-20 3.2E-25 192.2 -11.6 344 541-932 173-540 (565)
13 KOG0618 Serine/threonine phosp 99.7 1.4E-19 3E-24 203.9 -9.3 397 541-965 11-446 (1081)
14 KOG0618 Serine/threonine phosp 99.5 1.7E-16 3.6E-21 179.4 -5.7 391 530-962 47-465 (1081)
15 PRK15387 E3 ubiquitin-protein 99.4 1.1E-12 2.4E-17 154.2 13.7 86 580-683 201-288 (788)
16 PRK15387 E3 ubiquitin-protein 99.4 3.4E-12 7.3E-17 150.1 13.5 107 538-671 211-319 (788)
17 PRK04841 transcriptional regul 99.3 2.7E-10 5.8E-15 144.4 24.8 281 174-504 14-332 (903)
18 PRK15370 E3 ubiquitin-protein 99.2 1.3E-11 2.9E-16 146.3 8.0 244 580-932 178-427 (754)
19 KOG0617 Ras suppressor protein 99.2 3.1E-13 6.6E-18 123.0 -5.4 131 545-687 27-160 (264)
20 PRK00411 cdc6 cell division co 99.2 8.2E-09 1.8E-13 117.0 27.9 305 172-494 28-375 (394)
21 PRK15370 E3 ubiquitin-protein 99.1 1.3E-10 2.7E-15 138.1 10.5 119 531-672 181-301 (754)
22 KOG4658 Apoptotic ATPase [Sign 99.1 4.8E-11 1E-15 143.8 6.7 321 548-930 520-856 (889)
23 KOG0617 Ras suppressor protein 99.1 3.4E-12 7.4E-17 116.3 -4.0 138 529-677 57-196 (264)
24 KOG4237 Extracellular matrix p 99.0 8.3E-12 1.8E-16 128.8 -3.9 125 526-661 65-195 (498)
25 PF01637 Arch_ATPase: Archaeal 99.0 9.7E-10 2.1E-14 115.1 11.0 184 176-371 1-233 (234)
26 TIGR02928 orc1/cdc6 family rep 99.0 1E-07 2.2E-12 107.0 27.1 289 173-480 14-351 (365)
27 PRK00080 ruvB Holliday junctio 99.0 8E-09 1.7E-13 113.2 16.8 264 173-479 24-310 (328)
28 TIGR00635 ruvB Holliday juncti 99.0 1.1E-08 2.4E-13 111.5 17.7 266 174-478 4-288 (305)
29 TIGR03015 pepcterm_ATPase puta 99.0 1.8E-08 4E-13 107.8 17.6 175 200-376 42-242 (269)
30 KOG4237 Extracellular matrix p 98.9 6.1E-11 1.3E-15 122.5 -2.5 270 551-851 67-353 (498)
31 COG2909 MalT ATP-dependent tra 98.8 2.5E-07 5.4E-12 106.1 21.1 284 174-504 19-338 (894)
32 PF05729 NACHT: NACHT domain 98.8 3E-08 6.5E-13 97.5 11.0 136 202-339 1-163 (166)
33 COG2256 MGS1 ATPase related to 98.8 2.9E-08 6.2E-13 104.2 10.5 171 171-366 27-206 (436)
34 cd00116 LRR_RI Leucine-rich re 98.8 1.5E-09 3.2E-14 119.7 0.0 242 547-831 19-289 (319)
35 cd00116 LRR_RI Leucine-rich re 98.7 2.5E-09 5.5E-14 117.8 0.8 256 528-830 23-317 (319)
36 PRK06893 DNA replication initi 98.7 1.1E-07 2.4E-12 98.1 11.8 152 201-372 39-203 (229)
37 COG3899 Predicted ATPase [Gene 98.7 7E-07 1.5E-11 108.7 19.5 302 175-502 1-384 (849)
38 TIGR03420 DnaA_homol_Hda DnaA 98.7 4.5E-07 9.8E-12 94.1 15.2 170 179-374 22-203 (226)
39 PRK13342 recombination factor 98.7 2.2E-07 4.8E-12 105.0 13.6 177 174-373 12-197 (413)
40 PF05496 RuvB_N: Holliday junc 98.5 2.7E-06 5.8E-11 83.9 14.4 178 173-372 23-221 (233)
41 PF13173 AAA_14: AAA domain 98.5 3.6E-07 7.7E-12 85.0 8.1 119 202-331 3-127 (128)
42 PTZ00112 origin recognition co 98.5 6.6E-06 1.4E-10 95.4 19.6 202 173-376 754-986 (1164)
43 PRK07003 DNA polymerase III su 98.5 5.8E-06 1.3E-10 95.5 18.7 191 174-373 16-222 (830)
44 KOG0532 Leucine-rich repeat (L 98.5 7.7E-09 1.7E-13 112.1 -4.3 192 551-808 75-271 (722)
45 PRK14963 DNA polymerase III su 98.5 1.3E-06 2.8E-11 99.8 13.2 192 174-375 14-221 (504)
46 KOG4341 F-box protein containi 98.4 9.4E-09 2E-13 107.6 -4.7 177 765-970 286-470 (483)
47 PRK04195 replication factor C 98.4 2.5E-05 5.4E-10 90.2 22.0 243 173-452 13-272 (482)
48 PRK13341 recombination factor 98.4 2.2E-06 4.8E-11 101.7 13.1 168 174-366 28-211 (725)
49 PRK12402 replication factor C 98.4 5.3E-06 1.2E-10 92.0 15.3 186 174-370 15-224 (337)
50 COG4886 Leucine-rich repeat (L 98.4 2.7E-07 5.8E-12 104.8 4.9 102 576-684 112-216 (394)
51 PLN03025 replication factor C 98.3 5.5E-06 1.2E-10 90.4 14.0 174 174-367 13-195 (319)
52 PRK05564 DNA polymerase III su 98.3 8.1E-06 1.8E-10 88.9 15.2 179 174-371 4-189 (313)
53 PRK14961 DNA polymerase III su 98.3 8.4E-06 1.8E-10 90.4 15.5 185 174-368 16-216 (363)
54 PRK14960 DNA polymerase III su 98.3 4.5E-06 9.7E-11 95.4 12.9 186 174-369 15-216 (702)
55 PRK14957 DNA polymerase III su 98.3 7.2E-06 1.6E-10 93.9 14.7 193 174-375 16-224 (546)
56 PRK14949 DNA polymerase III su 98.3 9.8E-06 2.1E-10 95.6 15.7 188 174-370 16-218 (944)
57 PF14580 LRR_9: Leucine-rich r 98.3 4.6E-07 9.9E-12 87.7 3.7 127 548-688 16-151 (175)
58 PRK14956 DNA polymerase III su 98.3 4.1E-06 8.9E-11 93.2 11.7 185 174-367 18-217 (484)
59 PRK12323 DNA polymerase III su 98.3 7.7E-06 1.7E-10 93.3 13.9 189 174-371 16-224 (700)
60 TIGR02903 spore_lon_C ATP-depe 98.3 8.7E-06 1.9E-10 96.0 14.7 161 174-340 154-367 (615)
61 PRK00440 rfc replication facto 98.3 1.3E-05 2.9E-10 88.1 15.4 176 174-369 17-200 (319)
62 PRK08727 hypothetical protein; 98.3 1.9E-05 4.1E-10 81.7 15.5 147 202-368 42-200 (233)
63 KOG1259 Nischarin, modulator o 98.3 9E-08 2E-12 95.6 -2.0 22 892-914 395-416 (490)
64 PRK06645 DNA polymerase III su 98.3 6.7E-06 1.4E-10 93.6 12.5 185 174-367 21-224 (507)
65 cd00009 AAA The AAA+ (ATPases 98.3 5.3E-06 1.1E-10 79.6 10.2 124 177-310 1-131 (151)
66 KOG0989 Replication factor C, 98.2 1.3E-05 2.9E-10 81.4 12.9 184 173-372 35-231 (346)
67 KOG3207 Beta-tubulin folding c 98.2 4.2E-07 9.1E-12 96.0 2.0 139 737-907 197-337 (505)
68 KOG3207 Beta-tubulin folding c 98.2 3.4E-07 7.4E-12 96.7 0.9 186 733-930 142-336 (505)
69 PRK08691 DNA polymerase III su 98.2 2.5E-05 5.4E-10 90.4 15.6 187 174-369 16-217 (709)
70 PRK07994 DNA polymerase III su 98.2 2.4E-05 5.2E-10 91.0 15.6 188 174-370 16-218 (647)
71 PRK08903 DnaA regulatory inact 98.2 3.3E-05 7.1E-10 80.1 15.3 153 200-376 41-203 (227)
72 PRK09087 hypothetical protein; 98.2 1.7E-05 3.8E-10 81.2 13.0 140 201-371 44-194 (226)
73 KOG0532 Leucine-rich repeat (L 98.2 1.6E-07 3.4E-12 102.2 -2.4 126 544-684 114-241 (722)
74 TIGR01242 26Sp45 26S proteasom 98.2 1.9E-05 4.1E-10 87.9 13.9 180 172-366 120-328 (364)
75 PF13401 AAA_22: AAA domain; P 98.2 5.4E-06 1.2E-10 77.7 7.9 105 200-308 3-125 (131)
76 PRK14962 DNA polymerase III su 98.1 2E-05 4.3E-10 89.5 13.2 206 174-389 14-239 (472)
77 PRK05896 DNA polymerase III su 98.1 3.5E-05 7.6E-10 88.3 15.1 192 174-374 16-223 (605)
78 PRK08084 DNA replication initi 98.1 6.4E-05 1.4E-09 77.9 15.9 150 201-370 45-207 (235)
79 PRK05642 DNA replication initi 98.1 7.3E-05 1.6E-09 77.4 16.1 152 201-372 45-208 (234)
80 PRK14951 DNA polymerase III su 98.1 3.1E-05 6.6E-10 90.0 14.6 185 174-370 16-223 (618)
81 PF14580 LRR_9: Leucine-rich r 98.1 2.1E-06 4.5E-11 83.1 4.2 120 527-661 18-147 (175)
82 PRK14955 DNA polymerase III su 98.1 3.4E-05 7.3E-10 86.7 14.3 188 174-372 16-229 (397)
83 PRK14964 DNA polymerase III su 98.1 3.4E-05 7.4E-10 87.1 14.2 186 174-368 13-213 (491)
84 KOG2028 ATPase related to the 98.1 1.4E-05 3.1E-10 82.5 10.0 147 170-338 140-293 (554)
85 TIGR02397 dnaX_nterm DNA polym 98.1 4.9E-05 1.1E-09 84.9 15.5 188 174-372 14-218 (355)
86 PF13191 AAA_16: AAA ATPase do 98.1 4.1E-06 8.9E-11 83.9 5.0 47 175-224 1-47 (185)
87 KOG2120 SCF ubiquitin ligase, 98.0 1.4E-07 3E-12 94.4 -6.1 118 728-880 251-374 (419)
88 PRK09112 DNA polymerase III su 98.0 0.00015 3.3E-09 79.2 16.4 187 173-373 22-241 (351)
89 PRK07471 DNA polymerase III su 98.0 0.00016 3.5E-09 79.5 16.7 187 173-373 18-239 (365)
90 PRK07940 DNA polymerase III su 98.0 0.00013 2.9E-09 80.8 15.6 184 174-372 5-213 (394)
91 KOG4341 F-box protein containi 98.0 3.7E-07 8E-12 96.0 -4.7 162 734-928 291-460 (483)
92 PRK14958 DNA polymerase III su 98.0 0.00013 2.9E-09 83.8 15.5 186 174-369 16-217 (509)
93 TIGR00678 holB DNA polymerase 98.0 0.00023 4.9E-09 71.3 15.4 156 201-367 14-186 (188)
94 PF00308 Bac_DnaA: Bacterial d 98.0 0.0001 2.2E-09 75.2 13.0 154 200-369 33-205 (219)
95 PRK14954 DNA polymerase III su 97.9 0.00019 4.2E-09 83.8 16.7 188 174-373 16-230 (620)
96 PRK09111 DNA polymerase III su 97.9 6.8E-05 1.5E-09 87.4 12.6 188 174-371 24-232 (598)
97 PRK14959 DNA polymerase III su 97.9 0.00018 3.9E-09 83.1 15.4 193 174-376 16-225 (624)
98 PRK03992 proteasome-activating 97.9 0.00012 2.5E-09 82.0 13.6 158 173-340 130-316 (389)
99 PTZ00202 tuzin; Provisional 97.9 0.00023 5E-09 76.9 14.9 157 170-339 258-434 (550)
100 PRK14969 DNA polymerase III su 97.9 0.00011 2.3E-09 85.2 13.6 192 174-375 16-224 (527)
101 PRK07133 DNA polymerase III su 97.9 0.00025 5.5E-09 83.2 16.5 189 174-373 18-221 (725)
102 PRK14952 DNA polymerase III su 97.9 0.00024 5.2E-09 82.4 16.2 194 174-376 13-224 (584)
103 KOG1259 Nischarin, modulator o 97.9 1.5E-06 3.4E-11 87.0 -1.4 122 549-685 282-407 (490)
104 KOG1909 Ran GTPase-activating 97.9 3E-06 6.5E-11 87.4 0.5 44 546-590 25-68 (382)
105 PRK07764 DNA polymerase III su 97.9 0.00016 3.5E-09 87.3 15.2 185 174-367 15-216 (824)
106 COG1474 CDC6 Cdc6-related prot 97.9 0.0005 1.1E-08 75.5 17.7 194 175-372 18-238 (366)
107 TIGR03345 VI_ClpV1 type VI sec 97.9 0.00014 2.9E-09 89.1 14.1 152 174-338 187-362 (852)
108 COG3903 Predicted ATPase [Gene 97.8 1.7E-05 3.7E-10 84.5 5.3 261 200-478 13-291 (414)
109 TIGR02639 ClpA ATP-dependent C 97.8 0.00011 2.4E-09 89.3 13.0 154 174-339 182-358 (731)
110 PRK14970 DNA polymerase III su 97.8 0.00014 2.9E-09 81.5 12.6 174 174-367 17-204 (367)
111 CHL00095 clpC Clp protease ATP 97.8 9.8E-05 2.1E-09 90.9 12.2 152 174-337 179-352 (821)
112 PRK14087 dnaA chromosomal repl 97.8 0.00022 4.9E-09 80.9 14.1 165 201-373 141-320 (450)
113 PRK06305 DNA polymerase III su 97.8 0.00026 5.7E-09 80.4 14.6 191 174-373 17-224 (451)
114 COG4886 Leucine-rich repeat (L 97.8 1.8E-05 3.8E-10 89.9 4.4 122 549-683 114-238 (394)
115 PRK14971 DNA polymerase III su 97.8 0.00036 7.8E-09 82.1 15.2 185 174-367 17-217 (614)
116 PRK08451 DNA polymerase III su 97.8 0.0006 1.3E-08 77.9 16.4 189 174-371 14-217 (535)
117 TIGR02881 spore_V_K stage V sp 97.8 0.00048 1E-08 72.9 14.7 160 175-340 7-192 (261)
118 CHL00181 cbbX CbbX; Provisiona 97.8 0.00072 1.6E-08 72.0 15.8 131 202-340 60-210 (287)
119 PRK14953 DNA polymerase III su 97.7 0.00067 1.4E-08 77.6 16.5 187 174-372 16-220 (486)
120 PRK14950 DNA polymerase III su 97.7 0.00063 1.4E-08 80.4 16.8 188 174-371 16-220 (585)
121 PRK11331 5-methylcytosine-spec 97.7 0.00011 2.3E-09 81.1 8.4 101 174-282 175-285 (459)
122 PRK15386 type III secretion pr 97.7 0.00015 3.2E-09 79.0 9.4 138 769-930 48-187 (426)
123 PRK06620 hypothetical protein; 97.7 0.00045 9.8E-09 70.1 12.3 129 202-366 45-183 (214)
124 PHA02544 44 clamp loader, smal 97.7 0.00039 8.4E-09 76.2 12.5 144 173-337 20-171 (316)
125 TIGR00362 DnaA chromosomal rep 97.6 0.0007 1.5E-08 76.7 14.7 156 201-368 136-306 (405)
126 PRK06647 DNA polymerase III su 97.6 0.001 2.2E-08 77.5 16.1 187 174-369 16-217 (563)
127 PF14516 AAA_35: AAA-like doma 97.6 0.0083 1.8E-07 65.7 22.2 191 172-379 9-246 (331)
128 PRK14086 dnaA chromosomal repl 97.6 0.00066 1.4E-08 78.2 13.9 152 202-365 315-481 (617)
129 KOG2227 Pre-initiation complex 97.6 0.0011 2.4E-08 71.7 14.5 204 171-376 147-376 (529)
130 PRK12422 chromosomal replicati 97.6 0.00056 1.2E-08 77.4 13.1 133 201-341 141-286 (445)
131 PLN03150 hypothetical protein; 97.6 0.00011 2.4E-09 87.6 7.8 88 582-675 420-512 (623)
132 cd01128 rho_factor Transcripti 97.6 0.00013 2.8E-09 75.5 6.9 79 200-279 15-113 (249)
133 KOG1909 Ran GTPase-activating 97.6 3.4E-06 7.4E-11 87.0 -4.6 93 573-666 23-132 (382)
134 PF05673 DUF815: Protein of un 97.6 0.003 6.6E-08 63.7 16.2 126 171-312 24-154 (249)
135 PF05621 TniB: Bacterial TniB 97.6 0.00096 2.1E-08 69.5 13.0 190 174-369 34-258 (302)
136 COG0593 DnaA ATPase involved i 97.6 0.0013 2.8E-08 72.0 14.6 165 200-373 112-291 (408)
137 COG2255 RuvB Holliday junction 97.6 0.00086 1.9E-08 67.9 12.1 176 173-370 25-221 (332)
138 TIGR02880 cbbX_cfxQ probable R 97.6 0.00063 1.4E-08 72.5 12.1 129 203-339 60-208 (284)
139 PLN03150 hypothetical protein; 97.6 8.2E-05 1.8E-09 88.7 6.0 85 610-695 419-507 (623)
140 PRK14948 DNA polymerase III su 97.6 0.00053 1.1E-08 80.7 12.4 188 174-371 16-221 (620)
141 PRK08116 hypothetical protein; 97.6 0.00016 3.4E-09 76.3 7.3 103 202-309 115-221 (268)
142 PRK11034 clpA ATP-dependent Cl 97.5 0.00042 9.1E-09 83.1 11.4 156 174-339 186-362 (758)
143 PF12799 LRR_4: Leucine Rich r 97.5 9E-05 1.9E-09 53.5 3.5 40 630-670 1-40 (44)
144 PF00004 AAA: ATPase family as 97.5 0.0003 6.4E-09 65.8 8.2 95 204-308 1-111 (132)
145 TIGR03346 chaperone_ClpB ATP-d 97.5 0.00066 1.4E-08 83.9 13.3 154 174-339 173-349 (852)
146 PRK09376 rho transcription ter 97.5 0.00016 3.5E-09 77.8 6.8 77 201-278 169-265 (416)
147 TIGR03689 pup_AAA proteasome A 97.5 0.0016 3.5E-08 74.0 14.9 162 173-339 181-378 (512)
148 PRK14965 DNA polymerase III su 97.5 0.00063 1.4E-08 79.9 12.0 189 174-375 16-224 (576)
149 PRK07399 DNA polymerase III su 97.5 0.0012 2.7E-08 71.1 13.2 184 174-371 4-220 (314)
150 PF13855 LRR_8: Leucine rich r 97.5 9.8E-05 2.1E-09 58.3 3.5 58 897-960 2-60 (61)
151 PTZ00454 26S protease regulato 97.5 0.0016 3.5E-08 72.4 14.4 180 172-366 143-351 (398)
152 PRK12377 putative replication 97.5 0.00025 5.4E-09 73.2 7.3 101 201-308 101-205 (248)
153 PRK05563 DNA polymerase III su 97.5 0.0034 7.4E-08 73.4 17.6 185 174-368 16-216 (559)
154 PRK00149 dnaA chromosomal repl 97.5 0.0011 2.5E-08 76.0 13.5 157 201-369 148-319 (450)
155 PRK10536 hypothetical protein; 97.5 0.0017 3.6E-08 66.4 12.7 55 173-235 54-108 (262)
156 PRK14088 dnaA chromosomal repl 97.5 0.0011 2.4E-08 75.3 12.8 156 201-367 130-300 (440)
157 KOG0531 Protein phosphatase 1, 97.5 2.8E-05 6E-10 88.5 -0.1 96 579-683 71-168 (414)
158 PTZ00361 26 proteosome regulat 97.4 0.00072 1.6E-08 75.7 10.7 156 174-339 183-367 (438)
159 KOG0991 Replication factor C, 97.4 0.0019 4.1E-08 63.1 11.7 44 174-223 27-70 (333)
160 PRK10865 protein disaggregatio 97.4 0.0011 2.3E-08 81.7 12.9 154 174-339 178-354 (857)
161 PF13855 LRR_8: Leucine rich r 97.4 0.00011 2.3E-09 58.0 2.7 59 773-831 1-60 (61)
162 PRK05707 DNA polymerase III su 97.4 0.0011 2.4E-08 71.9 10.9 162 200-372 21-203 (328)
163 COG0466 Lon ATP-dependent Lon 97.4 0.0065 1.4E-07 69.6 17.1 164 173-339 322-508 (782)
164 PRK10787 DNA-binding ATP-depen 97.4 0.004 8.7E-08 75.5 16.7 164 173-339 321-506 (784)
165 TIGR00602 rad24 checkpoint pro 97.3 0.0014 3.1E-08 76.6 12.2 51 173-224 83-133 (637)
166 PRK07952 DNA replication prote 97.3 0.00089 1.9E-08 69.0 9.2 102 201-308 99-204 (244)
167 PF01695 IstB_IS21: IstB-like 97.3 0.00027 5.9E-09 69.4 5.2 100 201-309 47-150 (178)
168 TIGR00763 lon ATP-dependent pr 97.3 0.0074 1.6E-07 74.0 18.3 163 174-339 320-505 (775)
169 COG1222 RPT1 ATP-dependent 26S 97.3 0.0071 1.5E-07 63.5 14.8 188 174-376 151-371 (406)
170 COG1373 Predicted ATPase (AAA+ 97.3 0.0037 8.1E-08 69.9 13.8 146 203-371 39-191 (398)
171 smart00382 AAA ATPases associa 97.2 0.0018 3.8E-08 61.3 9.6 78 202-281 3-90 (148)
172 PRK08181 transposase; Validate 97.2 0.00056 1.2E-08 71.6 6.4 100 202-309 107-209 (269)
173 PRK08939 primosomal protein Dn 97.2 0.0011 2.3E-08 71.2 8.6 121 178-308 135-260 (306)
174 KOG0741 AAA+-type ATPase [Post 97.2 0.0068 1.5E-07 66.5 14.4 150 198-362 535-704 (744)
175 TIGR01241 FtsH_fam ATP-depende 97.2 0.0088 1.9E-07 69.6 16.8 179 172-365 53-259 (495)
176 PRK10865 protein disaggregatio 97.2 0.0037 8E-08 77.1 14.2 132 174-308 568-720 (857)
177 KOG0531 Protein phosphatase 1, 97.2 4E-05 8.6E-10 87.2 -2.8 121 549-684 70-193 (414)
178 PRK08769 DNA polymerase III su 97.2 0.012 2.6E-07 63.3 16.0 174 182-373 12-209 (319)
179 COG0542 clpA ATP-binding subun 97.2 0.0011 2.4E-08 77.9 8.7 133 174-307 491-642 (786)
180 PRK06526 transposase; Provisio 97.1 0.00068 1.5E-08 70.6 6.0 100 201-309 98-201 (254)
181 KOG3665 ZYG-1-like serine/thre 97.1 0.00047 1E-08 81.9 5.3 108 548-667 145-263 (699)
182 TIGR03345 VI_ClpV1 type VI sec 97.1 0.0016 3.5E-08 79.8 10.0 132 174-308 566-718 (852)
183 PF02562 PhoH: PhoH-like prote 97.1 0.0011 2.4E-08 65.8 6.9 121 178-309 4-156 (205)
184 CHL00176 ftsH cell division pr 97.1 0.0051 1.1E-07 72.7 13.4 177 173-364 182-386 (638)
185 PRK09183 transposase/IS protei 97.1 0.00096 2.1E-08 70.0 6.7 100 202-309 103-206 (259)
186 PF12799 LRR_4: Leucine Rich r 97.1 0.00042 9.1E-09 50.0 2.8 37 610-647 2-40 (44)
187 TIGR02639 ClpA ATP-dependent C 97.1 0.0043 9.3E-08 75.6 13.2 129 174-308 454-603 (731)
188 PRK08118 topology modulation p 97.0 0.0011 2.4E-08 64.6 6.1 65 203-279 3-68 (167)
189 TIGR03346 chaperone_ClpB ATP-d 97.0 0.0059 1.3E-07 75.6 14.0 132 174-308 565-717 (852)
190 KOG2120 SCF ubiquitin ligase, 97.0 7.9E-06 1.7E-10 82.2 -9.0 166 728-931 201-374 (419)
191 PF04665 Pox_A32: Poxvirus A32 97.0 0.0016 3.4E-08 66.3 7.1 36 202-239 14-49 (241)
192 TIGR00767 rho transcription te 97.0 0.00097 2.1E-08 72.4 5.6 78 201-279 168-265 (415)
193 KOG2004 Mitochondrial ATP-depe 97.0 0.0073 1.6E-07 68.8 12.4 58 172-231 409-466 (906)
194 KOG2543 Origin recognition com 97.0 0.034 7.3E-07 59.1 16.3 156 173-338 5-192 (438)
195 PRK06921 hypothetical protein; 97.0 0.0016 3.5E-08 68.5 6.9 98 201-308 117-224 (266)
196 COG3267 ExeA Type II secretory 97.0 0.021 4.6E-07 57.4 14.2 171 199-374 49-247 (269)
197 smart00763 AAA_PrkA PrkA AAA d 96.9 0.00083 1.8E-08 72.2 4.5 50 175-224 52-101 (361)
198 TIGR02640 gas_vesic_GvpN gas v 96.9 0.011 2.3E-07 62.5 12.9 21 203-223 23-43 (262)
199 PRK07261 topology modulation p 96.9 0.0019 4.2E-08 63.2 6.5 65 203-279 2-67 (171)
200 COG2812 DnaX DNA polymerase II 96.9 0.0029 6.4E-08 71.4 8.6 181 174-366 16-214 (515)
201 PRK06835 DNA replication prote 96.9 0.0021 4.5E-08 69.5 6.9 101 202-308 184-288 (329)
202 KOG2982 Uncharacterized conser 96.8 0.00058 1.3E-08 69.1 2.3 63 766-828 217-287 (418)
203 PRK06871 DNA polymerase III su 96.8 0.012 2.7E-07 63.3 12.4 171 182-369 10-200 (325)
204 PRK13531 regulatory ATPase Rav 96.8 0.003 6.4E-08 70.6 7.5 150 174-338 20-193 (498)
205 PF00910 RNA_helicase: RNA hel 96.8 0.0023 4.9E-08 57.2 5.4 21 204-224 1-21 (107)
206 KOG1859 Leucine-rich repeat pr 96.8 2.4E-05 5.2E-10 87.9 -8.9 40 771-810 252-292 (1096)
207 PF10443 RNA12: RNA12 protein; 96.8 0.052 1.1E-06 59.4 16.5 198 179-383 1-289 (431)
208 cd00561 CobA_CobO_BtuR ATP:cor 96.7 0.0061 1.3E-07 57.9 8.1 107 202-310 3-139 (159)
209 PRK08058 DNA polymerase III su 96.7 0.03 6.5E-07 61.2 14.7 157 175-337 6-180 (329)
210 COG2607 Predicted ATPase (AAA+ 96.7 0.0079 1.7E-07 59.5 8.9 121 171-309 57-183 (287)
211 KOG3665 ZYG-1-like serine/thre 96.7 0.00074 1.6E-08 80.3 2.2 127 550-685 121-258 (699)
212 CHL00095 clpC Clp protease ATP 96.7 0.006 1.3E-07 75.3 10.0 132 174-308 509-661 (821)
213 COG1484 DnaC DNA replication p 96.7 0.0021 4.5E-08 67.1 5.0 81 200-287 104-185 (254)
214 PRK15386 type III secretion pr 96.6 0.0033 7.1E-08 68.8 6.4 136 795-959 50-187 (426)
215 COG2884 FtsE Predicted ATPase 96.6 0.0091 2E-07 57.0 8.4 60 255-315 141-203 (223)
216 KOG4579 Leucine-rich repeat (L 96.6 0.00011 2.4E-09 65.6 -4.1 87 577-670 50-139 (177)
217 TIGR01243 CDC48 AAA family ATP 96.6 0.014 3.1E-07 71.4 12.5 180 173-367 177-382 (733)
218 PF13177 DNA_pol3_delta2: DNA 96.6 0.015 3.3E-07 56.3 9.8 143 178-327 1-162 (162)
219 KOG1859 Leucine-rich repeat pr 96.5 0.00017 3.6E-09 81.4 -4.3 98 576-683 183-285 (1096)
220 PRK06090 DNA polymerase III su 96.5 0.019 4.1E-07 61.7 11.4 171 182-372 11-201 (319)
221 PRK11034 clpA ATP-dependent Cl 96.5 0.0083 1.8E-07 72.2 9.2 116 174-295 458-583 (758)
222 COG0542 clpA ATP-binding subun 96.5 0.017 3.7E-07 68.2 11.4 154 174-338 170-345 (786)
223 PHA00729 NTP-binding motif con 96.5 0.01 2.2E-07 59.7 8.3 25 199-223 15-39 (226)
224 PRK05541 adenylylsulfate kinas 96.5 0.012 2.5E-07 58.2 8.8 77 200-278 6-86 (176)
225 KOG2982 Uncharacterized conser 96.4 0.00087 1.9E-08 67.9 0.5 186 735-934 69-263 (418)
226 KOG4579 Leucine-rich repeat (L 96.4 0.00074 1.6E-08 60.5 -0.1 97 580-683 27-129 (177)
227 PRK06964 DNA polymerase III su 96.4 0.029 6.4E-07 60.9 12.0 93 268-372 131-225 (342)
228 COG1875 NYN ribonuclease and A 96.4 0.018 3.8E-07 60.7 9.6 41 176-222 226-266 (436)
229 CHL00195 ycf46 Ycf46; Provisio 96.4 0.034 7.3E-07 63.6 12.8 159 174-341 228-407 (489)
230 KOG1514 Origin recognition com 96.4 0.06 1.3E-06 61.7 14.3 197 174-376 396-625 (767)
231 PF13207 AAA_17: AAA domain; P 96.4 0.0024 5.3E-08 58.6 3.0 21 203-223 1-21 (121)
232 PRK07993 DNA polymerase III su 96.3 0.026 5.7E-07 61.4 11.2 172 182-370 10-202 (334)
233 TIGR01243 CDC48 AAA family ATP 96.3 0.062 1.3E-06 65.9 15.7 178 173-366 452-657 (733)
234 cd03228 ABCC_MRP_Like The MRP 96.3 0.026 5.5E-07 55.4 10.1 111 201-314 28-160 (171)
235 PHA02244 ATPase-like protein 96.3 0.015 3.2E-07 62.7 8.4 21 203-223 121-141 (383)
236 TIGR02902 spore_lonB ATP-depen 96.2 0.028 6.2E-07 65.6 11.3 44 174-223 65-108 (531)
237 PF08433 KTI12: Chromatin asso 96.2 0.012 2.5E-07 61.9 7.3 73 202-278 2-79 (270)
238 PRK04132 replication factor C 96.2 0.042 9.2E-07 66.4 12.7 146 209-369 574-728 (846)
239 PF07693 KAP_NTPase: KAP famil 96.2 0.11 2.4E-06 57.1 15.3 42 180-224 2-43 (325)
240 COG5238 RNA1 Ran GTPase-activa 96.1 0.0055 1.2E-07 61.5 4.1 106 547-669 26-135 (388)
241 PRK15455 PrkA family serine pr 96.1 0.0041 8.9E-08 70.3 3.6 50 174-223 76-125 (644)
242 cd03247 ABCC_cytochrome_bd The 96.1 0.032 6.9E-07 55.2 9.7 110 201-313 28-161 (178)
243 KOG1644 U2-associated snRNP A' 96.1 0.0066 1.4E-07 58.5 4.4 123 776-930 22-150 (233)
244 cd01133 F1-ATPase_beta F1 ATP 96.1 0.012 2.6E-07 61.2 6.8 76 201-278 69-172 (274)
245 PF07728 AAA_5: AAA domain (dy 96.1 0.00053 1.2E-08 64.8 -2.9 20 204-223 2-21 (139)
246 PRK13695 putative NTPase; Prov 96.1 0.016 3.5E-07 57.0 7.4 22 203-224 2-23 (174)
247 COG1223 Predicted ATPase (AAA+ 96.1 0.049 1.1E-06 54.5 10.4 157 173-339 120-297 (368)
248 PRK06696 uridine kinase; Valid 96.0 0.0075 1.6E-07 62.1 4.9 43 178-223 2-44 (223)
249 PF13671 AAA_33: AAA domain; P 96.0 0.022 4.7E-07 54.0 7.7 21 203-223 1-21 (143)
250 TIGR01650 PD_CobS cobaltochela 96.0 0.09 2E-06 56.2 12.9 41 175-223 46-86 (327)
251 KOG2228 Origin recognition com 96.0 0.034 7.4E-07 58.0 9.3 164 173-339 23-219 (408)
252 cd03223 ABCD_peroxisomal_ALDP 96.0 0.044 9.5E-07 53.4 9.9 111 201-313 27-152 (166)
253 cd03216 ABC_Carb_Monos_I This 96.0 0.019 4.2E-07 55.7 7.1 109 201-312 26-145 (163)
254 KOG1051 Chaperone HSP104 and r 96.0 0.038 8.3E-07 66.3 10.8 120 174-296 562-687 (898)
255 COG4618 ArpD ABC-type protease 95.9 0.042 9.2E-07 60.6 10.0 22 202-223 363-384 (580)
256 cd03246 ABCC_Protease_Secretio 95.9 0.03 6.5E-07 55.1 8.4 110 201-313 28-160 (173)
257 cd01131 PilT Pilus retraction 95.9 0.015 3.4E-07 58.4 6.2 105 202-313 2-113 (198)
258 PF00448 SRP54: SRP54-type pro 95.9 0.016 3.5E-07 57.9 6.2 37 201-239 1-37 (196)
259 PRK06762 hypothetical protein; 95.9 0.091 2E-06 51.2 11.5 22 202-223 3-24 (166)
260 PF14532 Sigma54_activ_2: Sigm 95.8 0.0079 1.7E-07 56.6 3.7 108 177-309 1-110 (138)
261 cd03214 ABC_Iron-Siderophores_ 95.8 0.028 6.1E-07 55.7 7.7 109 201-312 25-161 (180)
262 PRK08699 DNA polymerase III su 95.8 0.049 1.1E-06 59.1 10.1 70 269-338 113-184 (325)
263 KOG0733 Nuclear AAA ATPase (VC 95.8 0.15 3.3E-06 57.4 13.7 98 173-279 189-292 (802)
264 cd03230 ABC_DR_subfamily_A Thi 95.8 0.044 9.5E-07 53.9 8.8 110 201-313 26-159 (173)
265 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.7 0.044 9.5E-07 51.9 8.4 104 201-312 26-130 (144)
266 KOG1969 DNA replication checkp 95.7 0.024 5.1E-07 65.0 7.3 80 199-293 324-411 (877)
267 KOG0735 AAA+-type ATPase [Post 95.7 0.078 1.7E-06 60.7 11.3 159 200-371 430-615 (952)
268 PF13604 AAA_30: AAA domain; P 95.7 0.034 7.5E-07 55.8 8.0 105 201-309 18-131 (196)
269 COG1136 SalX ABC-type antimicr 95.7 0.046 9.9E-07 55.1 8.5 61 256-316 147-210 (226)
270 COG1121 ZnuC ABC-type Mn/Zn tr 95.7 0.039 8.4E-07 56.5 8.1 22 202-223 31-52 (254)
271 PRK09361 radB DNA repair and r 95.6 0.026 5.7E-07 58.3 7.0 38 200-239 22-59 (225)
272 cd01120 RecA-like_NTPases RecA 95.6 0.026 5.7E-07 54.7 6.7 35 203-239 1-35 (165)
273 PRK11889 flhF flagellar biosyn 95.6 0.08 1.7E-06 57.7 10.6 24 200-223 240-263 (436)
274 PRK06067 flagellar accessory p 95.6 0.033 7.2E-07 57.9 7.6 78 200-279 24-130 (234)
275 COG1618 Predicted nucleotide k 95.5 0.0094 2E-07 55.3 2.8 23 201-223 5-27 (179)
276 COG0464 SpoVK ATPases of the A 95.5 0.16 3.4E-06 59.5 13.7 157 174-340 242-424 (494)
277 KOG0734 AAA+-type ATPase conta 95.5 0.025 5.4E-07 62.3 6.3 54 174-227 304-363 (752)
278 PRK00625 shikimate kinase; Pro 95.5 0.1 2.3E-06 50.9 10.1 21 203-223 2-22 (173)
279 cd03222 ABC_RNaseL_inhibitor T 95.4 0.018 4E-07 56.4 4.6 109 201-313 25-136 (177)
280 KOG0730 AAA+-type ATPase [Post 95.4 0.19 4E-06 57.5 12.9 159 171-340 431-616 (693)
281 PRK13539 cytochrome c biogenes 95.4 0.052 1.1E-06 55.2 7.9 61 262-325 138-200 (207)
282 PRK04296 thymidine kinase; Pro 95.3 0.035 7.6E-07 55.4 6.5 105 202-311 3-118 (190)
283 PF03215 Rad17: Rad17 cell cyc 95.3 0.077 1.7E-06 61.1 9.9 59 175-238 20-78 (519)
284 PF01583 APS_kinase: Adenylyls 95.3 0.04 8.6E-07 52.2 6.1 41 201-243 2-42 (156)
285 PF00158 Sigma54_activat: Sigm 95.3 0.015 3.4E-07 56.4 3.5 45 176-224 1-45 (168)
286 PLN00020 ribulose bisphosphate 95.3 0.031 6.8E-07 59.9 5.9 26 199-224 146-171 (413)
287 COG0572 Udk Uridine kinase [Nu 95.3 0.029 6.2E-07 55.8 5.3 25 199-223 6-30 (218)
288 cd01124 KaiC KaiC is a circadi 95.2 0.041 8.9E-07 54.9 6.6 35 203-239 1-35 (187)
289 cd03369 ABCC_NFT1 Domain 2 of 95.2 0.12 2.5E-06 52.7 10.0 23 201-223 34-56 (207)
290 COG1126 GlnQ ABC-type polar am 95.2 0.083 1.8E-06 51.9 8.2 58 257-314 142-201 (240)
291 KOG1644 U2-associated snRNP A' 95.2 0.027 5.8E-07 54.4 4.8 67 765-831 56-124 (233)
292 cd03252 ABCC_Hemolysin The ABC 95.2 0.12 2.6E-06 53.8 10.2 23 201-223 28-50 (237)
293 cd03251 ABCC_MsbA MsbA is an e 95.2 0.14 3E-06 53.3 10.6 23 201-223 28-50 (234)
294 TIGR03574 selen_PSTK L-seryl-t 95.2 0.028 6E-07 59.1 5.3 21 203-223 1-21 (249)
295 TIGR02237 recomb_radB DNA repa 95.1 0.046 1E-06 55.7 6.8 38 200-239 11-48 (209)
296 PF13238 AAA_18: AAA domain; P 95.1 0.015 3.1E-07 54.0 2.7 21 204-224 1-21 (129)
297 TIGR01069 mutS2 MutS2 family p 95.1 0.091 2E-06 63.9 10.1 178 200-390 321-518 (771)
298 cd03238 ABC_UvrA The excision 95.1 0.055 1.2E-06 53.0 6.8 121 201-323 21-161 (176)
299 cd03244 ABCC_MRP_domain2 Domai 95.1 0.12 2.7E-06 53.1 9.9 23 201-223 30-52 (221)
300 KOG2123 Uncharacterized conser 95.1 0.0033 7.2E-08 63.2 -1.8 98 549-660 17-123 (388)
301 cd00983 recA RecA is a bacter 95.0 0.066 1.4E-06 57.5 7.7 77 200-278 54-142 (325)
302 PRK10733 hflB ATP-dependent me 95.0 0.29 6.3E-06 58.8 14.0 156 174-339 152-335 (644)
303 PRK07667 uridine kinase; Provi 95.0 0.027 5.8E-07 56.5 4.4 37 183-223 3-39 (193)
304 PF12061 DUF3542: Protein of u 95.0 0.043 9.3E-07 56.2 5.7 76 5-84 297-373 (402)
305 cd03281 ABC_MSH5_euk MutS5 hom 95.0 0.068 1.5E-06 54.4 7.3 114 201-315 29-160 (213)
306 cd03229 ABC_Class3 This class 95.0 0.072 1.6E-06 52.7 7.4 23 201-223 26-48 (178)
307 PRK15429 formate hydrogenlyase 95.0 0.063 1.4E-06 65.3 8.4 129 174-309 376-521 (686)
308 TIGR03864 PQQ_ABC_ATP ABC tran 95.0 0.077 1.7E-06 55.2 7.9 23 201-223 27-49 (236)
309 COG0470 HolB ATPase involved i 94.9 0.14 2.9E-06 56.4 10.3 147 175-327 2-169 (325)
310 PRK12608 transcription termina 94.9 0.051 1.1E-06 59.0 6.6 89 183-278 120-229 (380)
311 PRK06547 hypothetical protein; 94.9 0.031 6.7E-07 54.6 4.5 26 199-224 13-38 (172)
312 PRK00889 adenylylsulfate kinas 94.9 0.17 3.8E-06 49.8 10.0 24 200-223 3-26 (175)
313 PF00485 PRK: Phosphoribulokin 94.9 0.018 3.9E-07 57.8 3.0 21 203-223 1-21 (194)
314 PF07724 AAA_2: AAA domain (Cd 94.9 0.024 5.1E-07 55.3 3.5 23 201-223 3-25 (171)
315 cd03263 ABC_subfamily_A The AB 94.9 0.091 2E-06 54.0 8.2 23 201-223 28-50 (220)
316 cd03253 ABCC_ATM1_transporter 94.9 0.18 3.9E-06 52.5 10.5 60 262-323 148-208 (236)
317 KOG0744 AAA+-type ATPase [Post 94.9 0.049 1.1E-06 56.4 5.8 76 201-278 177-259 (423)
318 KOG0731 AAA+-type ATPase conta 94.8 0.54 1.2E-05 55.6 14.9 179 174-369 311-521 (774)
319 COG4088 Predicted nucleotide k 94.8 0.049 1.1E-06 52.7 5.3 22 202-223 2-23 (261)
320 PRK05973 replicative DNA helic 94.8 0.14 3.1E-06 52.4 9.1 38 200-239 63-100 (237)
321 TIGR02012 tigrfam_recA protein 94.8 0.075 1.6E-06 57.0 7.4 78 200-279 54-143 (321)
322 PRK13538 cytochrome c biogenes 94.8 0.11 2.5E-06 52.5 8.5 23 201-223 27-49 (204)
323 PF07726 AAA_3: ATPase family 94.8 0.016 3.5E-07 52.2 1.9 29 204-234 2-30 (131)
324 KOG0729 26S proteasome regulat 94.8 0.064 1.4E-06 53.7 6.1 96 174-279 177-280 (435)
325 PRK05480 uridine/cytidine kina 94.7 0.024 5.1E-07 57.8 3.3 25 199-223 4-28 (209)
326 PRK11608 pspF phage shock prot 94.7 0.054 1.2E-06 59.2 6.3 46 174-223 6-51 (326)
327 TIGR00708 cobA cob(I)alamin ad 94.7 0.16 3.5E-06 48.9 8.7 110 201-310 5-141 (173)
328 TIGR02858 spore_III_AA stage I 94.7 0.15 3.2E-06 53.7 9.2 109 200-313 110-233 (270)
329 cd03217 ABC_FeS_Assembly ABC-t 94.7 0.14 3.1E-06 51.7 8.9 113 201-313 26-168 (200)
330 cd02019 NK Nucleoside/nucleoti 94.7 0.021 4.5E-07 46.2 2.3 21 203-223 1-21 (69)
331 KOG0733 Nuclear AAA ATPase (VC 94.7 0.46 1E-05 53.8 13.1 151 201-366 545-718 (802)
332 PRK13540 cytochrome c biogenes 94.7 0.086 1.9E-06 53.2 7.3 24 201-224 27-50 (200)
333 cd02027 APSK Adenosine 5'-phos 94.7 0.14 2.9E-06 48.9 8.2 21 203-223 1-21 (149)
334 PRK08233 hypothetical protein; 94.7 0.024 5.2E-07 56.3 3.2 24 201-224 3-26 (182)
335 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.7 0.23 4.9E-06 51.8 10.6 23 201-223 29-51 (238)
336 TIGR01817 nifA Nif-specific re 94.7 0.089 1.9E-06 62.1 8.4 49 172-224 194-242 (534)
337 cd00267 ABC_ATPase ABC (ATP-bi 94.7 0.099 2.2E-06 50.4 7.3 110 202-314 26-145 (157)
338 cd01394 radB RadB. The archaea 94.7 0.076 1.6E-06 54.5 6.9 37 200-238 18-54 (218)
339 PF08298 AAA_PrkA: PrkA AAA do 94.7 0.039 8.6E-07 58.9 4.7 50 174-223 61-110 (358)
340 cd01123 Rad51_DMC1_radA Rad51_ 94.6 0.081 1.7E-06 55.1 7.1 40 200-239 18-61 (235)
341 cd03254 ABCC_Glucan_exporter_l 94.6 0.21 4.7E-06 51.6 10.3 22 202-223 30-51 (229)
342 PRK13650 cbiO cobalt transport 94.6 0.096 2.1E-06 56.0 7.8 23 201-223 33-55 (279)
343 TIGR00235 udk uridine kinase. 94.6 0.027 6E-07 57.2 3.4 24 200-223 5-28 (207)
344 cd03282 ABC_MSH4_euk MutS4 hom 94.6 0.084 1.8E-06 53.2 6.7 111 201-316 29-158 (204)
345 cd03283 ABC_MutS-like MutS-lik 94.5 0.11 2.4E-06 52.2 7.4 109 202-315 26-154 (199)
346 PTZ00301 uridine kinase; Provi 94.5 0.027 5.9E-07 56.8 3.0 23 201-223 3-25 (210)
347 PRK05986 cob(I)alamin adenolsy 94.5 0.12 2.7E-06 50.5 7.3 110 201-310 22-159 (191)
348 TIGR03522 GldA_ABC_ATP gliding 94.5 0.13 2.8E-06 55.7 8.4 23 201-223 28-50 (301)
349 cd03215 ABC_Carb_Monos_II This 94.5 0.14 3E-06 50.9 8.0 24 201-224 26-49 (182)
350 cd03245 ABCC_bacteriocin_expor 94.5 0.2 4.4E-06 51.4 9.5 23 201-223 30-52 (220)
351 cd03269 ABC_putative_ATPase Th 94.4 0.12 2.6E-06 52.7 7.7 24 201-224 26-49 (210)
352 PRK09354 recA recombinase A; P 94.4 0.1 2.2E-06 56.5 7.4 78 200-279 59-148 (349)
353 cd03264 ABC_drug_resistance_li 94.4 0.14 3E-06 52.3 8.1 21 203-223 27-47 (211)
354 KOG2739 Leucine-rich acidic nu 94.4 0.022 4.8E-07 57.4 2.1 48 617-668 56-105 (260)
355 cd03225 ABC_cobalt_CbiO_domain 94.4 0.14 3E-06 52.3 8.0 23 201-223 27-49 (211)
356 cd03237 ABC_RNaseL_inhibitor_d 94.3 0.14 3E-06 53.5 8.0 24 201-224 25-48 (246)
357 TIGR02974 phageshock_pspF psp 94.3 0.078 1.7E-06 57.9 6.3 44 176-223 1-44 (329)
358 PRK14722 flhF flagellar biosyn 94.3 0.069 1.5E-06 58.5 5.8 23 201-223 137-159 (374)
359 COG2274 SunT ABC-type bacterio 94.3 0.16 3.5E-06 60.9 9.4 23 201-223 499-521 (709)
360 cd01393 recA_like RecA is a b 94.3 0.16 3.4E-06 52.6 8.3 24 200-223 18-41 (226)
361 cd00544 CobU Adenosylcobinamid 94.3 0.078 1.7E-06 51.5 5.6 140 204-367 2-167 (169)
362 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.3 0.14 3.1E-06 52.7 7.8 24 201-224 48-71 (224)
363 PRK05703 flhF flagellar biosyn 94.3 0.31 6.6E-06 55.1 11.0 23 201-223 221-243 (424)
364 KOG0739 AAA+-type ATPase [Post 94.3 0.64 1.4E-05 47.8 11.9 96 173-279 132-235 (439)
365 TIGR00960 3a0501s02 Type II (G 94.3 0.14 3E-06 52.5 7.7 23 201-223 29-51 (216)
366 cd03265 ABC_DrrA DrrA is the A 94.2 0.13 2.8E-06 52.9 7.5 23 201-223 26-48 (220)
367 cd03240 ABC_Rad50 The catalyti 94.2 0.24 5.2E-06 50.0 9.2 60 262-323 132-195 (204)
368 cd03213 ABCG_EPDR ABCG transpo 94.2 0.11 2.3E-06 52.3 6.6 24 201-224 35-58 (194)
369 smart00534 MUTSac ATPase domai 94.2 0.1 2.2E-06 52.0 6.3 111 203-315 1-128 (185)
370 cd03259 ABC_Carb_Solutes_like 94.2 0.12 2.5E-06 52.9 7.0 23 201-223 26-48 (213)
371 cd03289 ABCC_CFTR2 The CFTR su 94.2 0.21 4.5E-06 53.1 9.0 23 201-223 30-52 (275)
372 PRK05800 cobU adenosylcobinami 94.2 0.048 1.1E-06 53.1 3.9 22 203-224 3-24 (170)
373 TIGR03740 galliderm_ABC gallid 94.2 0.11 2.5E-06 53.4 6.9 23 201-223 26-48 (223)
374 PRK03839 putative kinase; Prov 94.2 0.032 7E-07 55.3 2.7 22 203-224 2-23 (180)
375 TIGR01277 thiQ thiamine ABC tr 94.1 0.17 3.8E-06 51.6 8.0 24 201-224 24-47 (213)
376 PRK10463 hydrogenase nickel in 94.1 0.2 4.4E-06 52.7 8.4 26 198-223 101-126 (290)
377 TIGR03877 thermo_KaiC_1 KaiC d 94.1 0.19 4.2E-06 52.2 8.4 38 200-239 20-57 (237)
378 cd03301 ABC_MalK_N The N-termi 94.0 0.15 3.3E-06 52.1 7.5 24 201-224 26-49 (213)
379 PRK04040 adenylate kinase; Pro 94.0 0.039 8.5E-07 54.8 3.0 23 201-223 2-24 (188)
380 PF03969 AFG1_ATPase: AFG1-lik 94.0 0.056 1.2E-06 59.4 4.4 103 199-309 60-167 (362)
381 cd03266 ABC_NatA_sodium_export 94.0 0.16 3.4E-06 52.2 7.6 23 201-223 31-53 (218)
382 cd03293 ABC_NrtD_SsuB_transpor 94.0 0.2 4.4E-06 51.4 8.4 23 202-224 31-53 (220)
383 cd03268 ABC_BcrA_bacitracin_re 94.0 0.14 3.1E-06 52.1 7.1 23 201-223 26-48 (208)
384 PRK10584 putative ABC transpor 94.0 0.17 3.6E-06 52.4 7.8 23 201-223 36-58 (228)
385 PRK08533 flagellar accessory p 94.0 0.2 4.4E-06 51.6 8.2 23 201-223 24-46 (230)
386 PF08423 Rad51: Rad51; InterP 94.0 0.13 2.7E-06 54.0 6.8 39 201-239 38-80 (256)
387 TIGR01360 aden_kin_iso1 adenyl 94.0 0.041 9E-07 54.9 3.1 24 200-223 2-25 (188)
388 PRK10867 signal recognition pa 93.9 0.16 3.4E-06 57.1 7.8 24 200-223 99-122 (433)
389 KOG2170 ATPase of the AAA+ sup 93.9 0.21 4.6E-06 51.5 8.0 116 174-294 82-203 (344)
390 cd03231 ABC_CcmA_heme_exporter 93.9 0.18 3.8E-06 51.0 7.6 23 201-223 26-48 (201)
391 TIGR00554 panK_bact pantothena 93.9 0.068 1.5E-06 56.6 4.7 25 199-223 60-84 (290)
392 TIGR01189 ccmA heme ABC export 93.9 0.17 3.6E-06 51.1 7.4 24 201-224 26-49 (198)
393 PRK15177 Vi polysaccharide exp 93.9 0.2 4.2E-06 51.2 8.0 24 201-224 13-36 (213)
394 COG0396 sufC Cysteine desulfur 93.9 0.46 1E-05 47.3 9.9 62 262-323 155-218 (251)
395 PF05659 RPW8: Arabidopsis bro 93.9 0.78 1.7E-05 43.1 11.1 83 2-84 3-86 (147)
396 cd03226 ABC_cobalt_CbiO_domain 93.9 0.17 3.7E-06 51.3 7.4 23 201-223 26-48 (205)
397 KOG1532 GTPase XAB1, interacts 93.9 0.16 3.5E-06 51.4 6.8 27 198-224 16-42 (366)
398 cd03267 ABC_NatA_like Similar 93.9 0.17 3.7E-06 52.6 7.6 23 201-223 47-69 (236)
399 TIGR00150 HI0065_YjeE ATPase, 93.9 0.076 1.7E-06 48.9 4.3 40 181-224 6-45 (133)
400 cd03224 ABC_TM1139_LivF_branch 93.8 0.26 5.7E-06 50.7 8.9 24 200-223 25-48 (222)
401 PRK09270 nucleoside triphospha 93.8 0.066 1.4E-06 55.4 4.4 25 199-223 31-55 (229)
402 PRK13541 cytochrome c biogenes 93.8 0.18 4E-06 50.6 7.5 24 201-224 26-49 (195)
403 PRK13640 cbiO cobalt transport 93.8 0.18 3.8E-06 54.1 7.7 23 201-223 33-55 (282)
404 PRK11248 tauB taurine transpor 93.8 0.15 3.3E-06 53.6 7.1 23 201-223 27-49 (255)
405 PRK12727 flagellar biosynthesi 93.8 0.16 3.4E-06 57.8 7.4 24 200-223 349-372 (559)
406 COG1428 Deoxynucleoside kinase 93.8 0.042 9.1E-07 53.9 2.5 24 201-224 4-27 (216)
407 TIGR03499 FlhF flagellar biosy 93.8 0.15 3.3E-06 54.4 7.1 24 200-223 193-216 (282)
408 PRK12723 flagellar biosynthesi 93.8 0.25 5.4E-06 54.8 8.9 24 200-223 173-196 (388)
409 cd03233 ABC_PDR_domain1 The pl 93.8 0.28 6.1E-06 49.5 8.8 24 201-224 33-56 (202)
410 cd03258 ABC_MetN_methionine_tr 93.8 0.19 4E-06 52.2 7.7 23 201-223 31-53 (233)
411 cd01122 GP4d_helicase GP4d_hel 93.7 0.31 6.6E-06 52.0 9.5 38 201-239 30-67 (271)
412 TIGR01188 drrA daunorubicin re 93.7 0.2 4.3E-06 54.3 8.1 23 201-223 19-41 (302)
413 PRK14974 cell division protein 93.7 0.18 4E-06 54.6 7.6 24 200-223 139-162 (336)
414 PF00560 LRR_1: Leucine Rich R 93.7 0.028 6.2E-07 33.6 0.8 21 631-652 1-21 (22)
415 COG4608 AppF ABC-type oligopep 93.7 0.21 4.5E-06 51.3 7.5 113 201-316 39-177 (268)
416 cd03115 SRP The signal recogni 93.7 0.36 7.9E-06 47.4 9.2 21 203-223 2-22 (173)
417 COG0563 Adk Adenylate kinase a 93.7 0.15 3.3E-06 49.9 6.4 22 203-224 2-23 (178)
418 PRK05439 pantothenate kinase; 93.7 0.081 1.8E-06 56.5 4.8 26 198-223 83-108 (311)
419 PRK03846 adenylylsulfate kinas 93.7 0.14 3.1E-06 51.5 6.4 25 199-223 22-46 (198)
420 PRK09544 znuC high-affinity zi 93.7 0.19 4.1E-06 52.7 7.5 23 201-223 30-52 (251)
421 PF01078 Mg_chelatase: Magnesi 93.6 0.11 2.3E-06 51.6 5.1 42 174-223 3-44 (206)
422 cd03300 ABC_PotA_N PotA is an 93.6 0.15 3.1E-06 53.0 6.6 24 201-224 26-49 (232)
423 cd02020 CMPK Cytidine monophos 93.6 0.12 2.6E-06 49.1 5.5 21 203-223 1-21 (147)
424 PF06309 Torsin: Torsin; Inte 93.6 0.11 2.4E-06 46.8 4.8 50 175-224 26-76 (127)
425 PRK13648 cbiO cobalt transport 93.6 0.19 4.1E-06 53.5 7.5 23 201-223 35-57 (269)
426 COG2019 AdkA Archaeal adenylat 93.6 0.055 1.2E-06 50.6 2.9 23 201-223 4-26 (189)
427 KOG0736 Peroxisome assembly fa 93.6 2 4.4E-05 50.3 15.7 98 170-280 668-775 (953)
428 PRK12724 flagellar biosynthesi 93.6 0.33 7.2E-06 53.7 9.3 24 200-223 222-245 (432)
429 PRK05022 anaerobic nitric oxid 93.6 0.13 2.8E-06 60.1 6.7 48 173-224 186-233 (509)
430 cd02024 NRK1 Nicotinamide ribo 93.5 0.042 9.2E-07 54.2 2.2 21 203-223 1-21 (187)
431 TIGR01425 SRP54_euk signal rec 93.5 0.22 4.8E-06 55.6 7.9 24 200-223 99-122 (429)
432 KOG2035 Replication factor C, 93.5 0.64 1.4E-05 47.5 10.2 229 175-414 14-282 (351)
433 KOG0652 26S proteasome regulat 93.5 0.73 1.6E-05 46.3 10.5 173 174-357 171-372 (424)
434 PRK13543 cytochrome c biogenes 93.4 0.23 4.9E-06 50.8 7.5 24 201-224 37-60 (214)
435 TIGR00968 3a0106s01 sulfate AB 93.4 0.22 4.8E-06 51.8 7.5 23 201-223 26-48 (237)
436 cd02023 UMPK Uridine monophosp 93.4 0.045 9.8E-07 55.2 2.3 21 203-223 1-21 (198)
437 TIGR01193 bacteriocin_ABC ABC- 93.4 0.37 8E-06 59.2 10.6 23 201-223 500-522 (708)
438 cd02025 PanK Pantothenate kina 93.4 0.044 9.5E-07 56.0 2.1 21 203-223 1-21 (220)
439 PF03193 DUF258: Protein of un 93.4 0.086 1.9E-06 50.2 3.9 35 181-224 24-58 (161)
440 PRK09493 glnQ glutamine ABC tr 93.4 0.25 5.4E-06 51.6 7.9 23 201-223 27-49 (240)
441 cd03280 ABC_MutS2 MutS2 homolo 93.4 0.36 7.9E-06 48.6 8.8 22 201-222 28-49 (200)
442 PRK13635 cbiO cobalt transport 93.4 0.24 5.2E-06 52.9 7.9 23 201-223 33-55 (279)
443 COG1102 Cmk Cytidylate kinase 93.4 0.063 1.4E-06 50.0 2.9 22 203-224 2-23 (179)
444 PRK00771 signal recognition pa 93.4 0.3 6.6E-06 55.0 8.9 24 200-223 94-117 (437)
445 cd03298 ABC_ThiQ_thiamine_tran 93.4 0.25 5.4E-06 50.4 7.7 23 201-223 24-46 (211)
446 TIGR02322 phosphon_PhnN phosph 93.4 0.056 1.2E-06 53.5 2.8 23 202-224 2-24 (179)
447 PRK10771 thiQ thiamine transpo 93.3 0.27 5.8E-06 51.0 8.0 23 201-223 25-47 (232)
448 cd03218 ABC_YhbG The ABC trans 93.3 0.23 5.1E-06 51.5 7.6 23 201-223 26-48 (232)
449 PRK13657 cyclic beta-1,2-gluca 93.3 0.24 5.2E-06 59.4 8.7 23 201-223 361-383 (588)
450 PRK11247 ssuB aliphatic sulfon 93.3 0.26 5.6E-06 51.9 7.8 23 201-223 38-60 (257)
451 PF10236 DAP3: Mitochondrial r 93.3 1.3 2.9E-05 47.8 13.4 49 320-369 258-306 (309)
452 PRK00131 aroK shikimate kinase 93.3 0.058 1.3E-06 53.1 2.7 23 201-223 4-26 (175)
453 TIGR01420 pilT_fam pilus retra 93.3 0.15 3.3E-06 56.1 6.3 105 201-312 122-233 (343)
454 cd03248 ABCC_TAP TAP, the Tran 93.2 0.42 9E-06 49.3 9.2 23 201-223 40-62 (226)
455 PRK13947 shikimate kinase; Pro 93.2 0.056 1.2E-06 53.1 2.5 21 203-223 3-23 (171)
456 PRK10751 molybdopterin-guanine 93.2 0.083 1.8E-06 51.1 3.6 24 200-223 5-28 (173)
457 PRK11160 cysteine/glutathione 93.2 0.31 6.7E-06 58.2 9.2 24 200-223 365-388 (574)
458 PRK12726 flagellar biosynthesi 93.2 0.34 7.3E-06 52.8 8.4 38 200-239 205-242 (407)
459 PRK13537 nodulation ABC transp 93.2 0.27 5.8E-06 53.3 7.9 23 201-223 33-55 (306)
460 PRK13647 cbiO cobalt transport 93.2 0.23 5E-06 52.9 7.3 23 201-223 31-53 (274)
461 COG4133 CcmA ABC-type transpor 93.2 0.64 1.4E-05 44.8 9.2 22 202-223 29-50 (209)
462 PRK13632 cbiO cobalt transport 93.1 0.28 6.1E-06 52.2 7.9 23 201-223 35-57 (271)
463 TIGR01359 UMP_CMP_kin_fam UMP- 93.1 0.053 1.2E-06 53.9 2.2 21 203-223 1-21 (183)
464 PTZ00494 tuzin-like protein; P 93.1 6.4 0.00014 43.5 17.6 158 171-339 368-544 (664)
465 KOG2123 Uncharacterized conser 93.1 0.0022 4.7E-08 64.5 -7.5 66 770-837 38-105 (388)
466 cd00227 CPT Chloramphenicol (C 93.1 0.062 1.3E-06 52.9 2.6 23 202-224 3-25 (175)
467 COG2401 ABC-type ATPase fused 93.1 0.22 4.8E-06 53.5 6.7 149 172-320 369-579 (593)
468 PRK13642 cbiO cobalt transport 93.1 0.29 6.2E-06 52.3 7.9 23 201-223 33-55 (277)
469 COG1131 CcmA ABC-type multidru 93.0 0.43 9.3E-06 51.2 9.1 23 201-223 31-53 (293)
470 PRK04328 hypothetical protein; 93.0 0.26 5.5E-06 51.6 7.3 38 200-239 22-59 (249)
471 COG1066 Sms Predicted ATP-depe 93.0 0.24 5.2E-06 53.6 6.9 36 201-239 93-128 (456)
472 cd02021 GntK Gluconate kinase 93.0 0.06 1.3E-06 51.5 2.4 22 203-224 1-22 (150)
473 KOG0728 26S proteasome regulat 93.0 1.6 3.6E-05 43.6 12.0 188 175-374 147-365 (404)
474 COG1120 FepC ABC-type cobalami 93.0 0.44 9.6E-06 49.2 8.6 23 201-223 28-50 (258)
475 PRK06217 hypothetical protein; 93.0 0.064 1.4E-06 53.3 2.5 22 203-224 3-24 (183)
476 cd02028 UMPK_like Uridine mono 93.0 0.061 1.3E-06 53.1 2.3 21 203-223 1-21 (179)
477 TIGR02655 circ_KaiC circadian 92.9 0.26 5.7E-06 57.1 7.9 38 200-239 262-299 (484)
478 PRK11176 lipid transporter ATP 92.9 0.41 8.9E-06 57.4 9.9 23 201-223 369-391 (582)
479 TIGR03375 type_I_sec_LssB type 92.9 0.24 5.2E-06 60.7 7.9 23 201-223 491-513 (694)
480 CHL00206 ycf2 Ycf2; Provisiona 92.9 1.4 3E-05 57.3 14.2 25 200-224 1629-1653(2281)
481 TIGR03878 thermo_KaiC_2 KaiC d 92.9 0.25 5.4E-06 52.0 6.9 38 200-239 35-72 (259)
482 cd01121 Sms Sms (bacterial rad 92.9 0.21 4.5E-06 55.3 6.5 38 200-239 81-118 (372)
483 cd03250 ABCC_MRP_domain1 Domai 92.8 0.68 1.5E-05 46.9 9.9 24 201-224 31-54 (204)
484 TIGR03263 guanyl_kin guanylate 92.8 0.076 1.6E-06 52.6 2.9 22 202-223 2-23 (180)
485 PRK11614 livF leucine/isoleuci 92.8 0.41 9E-06 49.8 8.5 23 201-223 31-53 (237)
486 PRK13644 cbiO cobalt transport 92.8 0.36 7.8E-06 51.5 8.1 23 201-223 28-50 (274)
487 TIGR02203 MsbA_lipidA lipid A 92.8 0.43 9.2E-06 57.2 9.7 23 201-223 358-380 (571)
488 TIGR02868 CydC thiol reductant 92.8 0.31 6.6E-06 57.7 8.4 24 200-223 360-383 (529)
489 PF03205 MobB: Molybdopterin g 92.8 0.086 1.9E-06 49.5 3.0 22 202-223 1-22 (140)
490 COG0468 RecA RecA/RadA recombi 92.8 0.29 6.2E-06 51.4 7.0 39 199-239 58-96 (279)
491 PRK13949 shikimate kinase; Pro 92.8 0.073 1.6E-06 51.9 2.5 21 203-223 3-23 (169)
492 PRK13546 teichoic acids export 92.7 0.35 7.7E-06 51.1 7.9 24 201-224 50-73 (264)
493 cd03243 ABC_MutS_homologs The 92.7 0.26 5.7E-06 49.8 6.7 110 202-316 30-158 (202)
494 PRK13633 cobalt transporter AT 92.7 0.33 7.2E-06 51.9 7.8 23 201-223 36-58 (280)
495 TIGR00390 hslU ATP-dependent p 92.7 0.12 2.6E-06 56.8 4.4 51 174-224 12-70 (441)
496 KOG0743 AAA+-type ATPase [Post 92.7 1.4 3E-05 48.6 12.3 149 202-376 236-413 (457)
497 TIGR02314 ABC_MetN D-methionin 92.7 0.23 5E-06 54.4 6.6 23 201-223 31-53 (343)
498 COG5635 Predicted NTPase (NACH 92.7 0.15 3.2E-06 63.3 5.7 130 201-331 222-370 (824)
499 TIGR03410 urea_trans_UrtE urea 92.7 0.48 1E-05 49.0 8.7 23 201-223 26-48 (230)
500 PRK11153 metN DL-methionine tr 92.6 0.27 5.9E-06 54.2 7.1 23 201-223 31-53 (343)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=8.7e-86 Score=780.97 Aligned_cols=643 Identities=26% Similarity=0.403 Sum_probs=509.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHhhhhHhhcCcHHHHHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHhhcchhhhhH
Q 002044 2 VDAIVSVVLQQLISVAVEETKGGVRLVTGVGTEVKRLQDNLEAIQAVLVDAERRQLEELPVRLWLEKLKEASYDMEDMLD 81 (976)
Q Consensus 2 a~~~v~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~l~~~~yd~ed~ld 81 (976)
|++.+++.++|+.. .+.+++..+.+.++.+..|++.|..++.+++||++++.....+..|.+.+++++|++||+++
T Consensus 1 ~~~~~s~~~~~~~~----~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~ 76 (889)
T KOG4658|consen 1 MGACVSFGVEKLDQ----LLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIW 76 (889)
T ss_pred CCeEEEEehhhHHH----HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777 78899999999999999999999999999999999988889999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCcccCccCcccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHhcccccccccc----C
Q 002044 82 EWNTARLKLQIEGVDDENCSLVPQKKVCNSFFPAVSCFGFRHIFLRRDIAIKMKAINREVDDIVKQKDLFNFNFN----R 157 (976)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i~~~~~~~~~~~~----~ 157 (976)
.|..+....+....-. ++.... +.. |+ . .+++..+..+..+.+++.++.+..+.+..... .
T Consensus 77 ~~~v~~~~~~~~~~l~------~~~~~~-~~~----c~--~--~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~ 141 (889)
T KOG4658|consen 77 LFLVEEIERKANDLLS------TRSVER-QRL----CL--C--GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVG 141 (889)
T ss_pred HHHHHHHHHHHhHHhh------hhHHHH-HHH----hh--h--hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceeccc
Confidence 9998876554322100 000000 111 11 1 45667777777777777777777666653332 1
Q ss_pred C-CcccccccccccccCCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccc-hhcccccce
Q 002044 158 H-TDKLEKIQSTALIDLSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDED-VISNFEKRM 235 (976)
Q Consensus 158 ~-~~~~~~~~~~~~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~ 235 (976)
. ......++..+..+... ||.+..++++.+.|... +..+|+|+||||+||||||+.++|+.. ++.+|+.++
T Consensus 142 ~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d------~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~i 214 (889)
T KOG4658|consen 142 ESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMED------DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVI 214 (889)
T ss_pred ccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccC------CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEE
Confidence 1 11122344445555555 99999999999999953 348999999999999999999999987 999999999
Q ss_pred eehH-----------HHHHHHhCCCCCc--ccHHHHHHHHHHHHcCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEE
Q 002044 236 WNCE-----------SIIEALEGFAPNL--GELNSLLLRIDAFIARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRI 302 (976)
Q Consensus 236 wv~~-----------~~~~~l~~~~~~~--~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 302 (976)
||+| +|++.+....... ...++....+.+.|++|||+|||||||++ .+|+.+..++|....||||
T Consensus 215 WV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~Kv 292 (889)
T KOG4658|consen 215 WVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKV 292 (889)
T ss_pred EEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEE
Confidence 9998 4444444322222 23468889999999999999999999986 5699999999999999999
Q ss_pred EEEcCchhhhhc-cCCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHHhhhhccCCC
Q 002044 303 LVTTRKETVARM-MESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTIGSLLRFKRT 381 (976)
Q Consensus 303 ivTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~ 381 (976)
++|||++.|+.. +++...++++.|+.+|||+||++.+|.... ...+.++++|++|+++|+|+|||+.++|+.|+.+++
T Consensus 293 vlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t 371 (889)
T KOG4658|consen 293 VLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKT 371 (889)
T ss_pred EEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCc
Confidence 999999999998 788899999999999999999999976533 333459999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhh----hhhhhhhhhHHHHhhhcCCcHHHHHHHhhhcccCCCceeChHHHHHHHHHcCcccccC-Cch
Q 002044 382 REEWQSILDSEIWQ----LEEFEKGLLAPLLLSYNDLPTIIKQCFLYCAVFPKDCFLERDELIKLWMAQGYIVQKG-NKE 456 (976)
Q Consensus 382 ~~~w~~~l~~~~~~----~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~-~~~ 456 (976)
.++|+++.+...+. .+...+.+++++++||+.||+++|.||+|||+||+||.|+++.||.+|+||||+.+.. +..
T Consensus 372 ~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~ 451 (889)
T KOG4658|consen 372 VQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGET 451 (889)
T ss_pred HHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccc
Confidence 99999999865444 2334578999999999999999999999999999999999999999999999998843 455
Q ss_pred hhHHHHHHHHHHHHHhcCCccccccCCCCcEeEEEechhHHHHHHHhhh-----hhceEeecCCCCCcccccccccCcee
Q 002044 457 MEMEMIGEGYFDYLATRSFFQEFEKDEAGIVRRCKMHDIVHDFAQFLTK-----KEYAAVEIDGDEEPLSLINTSQEKLR 531 (976)
Q Consensus 457 ~~~~~~~~~~~~~L~~r~ll~~~~~~~~~~~~~~~mHdlv~~l~~~~~~-----~e~~~~~~~~~~~~~~~~~~~~~~~r 531 (976)
+ ++.|+.|+.+|++++|++..... ++..+|+|||+||++|.+++. +++.++..+ ......+....+..+|
T Consensus 452 ~--~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~-~~~~~~~~~~~~~~~r 526 (889)
T KOG4658|consen 452 A--EDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDG-VGLSEIPQVKSWNSVR 526 (889)
T ss_pred h--hcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECC-cCccccccccchhhee
Confidence 5 89999999999999999877543 666789999999999999998 666544433 1111122334567899
Q ss_pred EEEEEccCCCCCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCcc
Q 002044 532 HLMLVLGYKNSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHL 611 (976)
Q Consensus 532 ~l~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~L 611 (976)
++++.++.....+.. ..+++|++|.+..|.. ....+..++|..++.||||||++| ..+.++|++|+.|.||
T Consensus 527 r~s~~~~~~~~~~~~-~~~~~L~tLll~~n~~---~l~~is~~ff~~m~~LrVLDLs~~-----~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 527 RMSLMNNKIEHIAGS-SENPKLRTLLLQRNSD---WLLEISGEFFRSLPLLRVLDLSGN-----SSLSKLPSSIGELVHL 597 (889)
T ss_pred EEEEeccchhhccCC-CCCCccceEEEeecch---hhhhcCHHHHhhCcceEEEECCCC-----CccCcCChHHhhhhhh
Confidence 999999887665433 4456899999998862 233445667999999999999984 4456899999999999
Q ss_pred ceecC--ccccccCccccccCCccEEecCCCCCCcccchhhcccCCCcEEEecccccccCcccccCCCCCCcCCceEE
Q 002044 612 RYLKL--YLVEKLPETCCELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLEYMPKGIERLTSLRTLSEFVV 687 (976)
Q Consensus 612 r~L~L--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~ 687 (976)
|||++ +.+..||.++++|+.|++||+..+..+..+|..+..|++||+|.+.+.....-...++.+.+|++|..+..
T Consensus 598 ryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 598 RYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 99999 89999999999999999999999987777777777799999999944332211122444455555544443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.8e-62 Score=615.56 Aligned_cols=605 Identities=21% Similarity=0.246 Sum_probs=384.4
Q ss_pred ccccCCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHH-------
Q 002044 169 ALIDLSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESI------- 241 (976)
Q Consensus 169 ~~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~------- 241 (976)
+..+..++|||+..++++..+|... .+++++|+||||||+||||||+++|+ ++..+|+..+|+....
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~ 252 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEI 252 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhh
Confidence 3445678999999999999988643 34789999999999999999999999 6888998887764210
Q ss_pred -------------------HHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEE
Q 002044 242 -------------------IEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRI 302 (976)
Q Consensus 242 -------------------~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 302 (976)
+..+.... +. ... ....+++.++++|+||||||||+. ..|+.+.....+.++||+|
T Consensus 253 ~~~~~~~~~~~~~~l~~~~l~~il~~~-~~-~~~-~~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrI 327 (1153)
T PLN03210 253 YSSANPDDYNMKLHLQRAFLSEILDKK-DI-KIY-HLGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRI 327 (1153)
T ss_pred cccccccccchhHHHHHHHHHHHhCCC-Cc-ccC-CHHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEE
Confidence 01111100 00 000 114577889999999999999754 6788888766667899999
Q ss_pred EEEcCchhhhhccCCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHHhhhhccCCCH
Q 002044 303 LVTTRKETVARMMESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTIGSLLRFKRTR 382 (976)
Q Consensus 303 ivTtR~~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~ 382 (976)
|||||++.++..++..++|+++.+++++||+||+++||+.. .+++++.+++++|+++|+|+||||+++|++|+.+ +.
T Consensus 328 IiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~--~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~ 404 (1153)
T PLN03210 328 IVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN--SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DK 404 (1153)
T ss_pred EEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC--CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CH
Confidence 99999999998777788999999999999999999999754 3456789999999999999999999999999865 78
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhHHHHhhhcCCcH-HHHHHHhhhcccCCCceeChHHHHHHHHHcCcccccCCchhhHHH
Q 002044 383 EEWQSILDSEIWQLEEFEKGLLAPLLLSYNDLPT-IIKQCFLYCAVFPKDCFLERDELIKLWMAQGYIVQKGNKEMEMEM 461 (976)
Q Consensus 383 ~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~-~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~ 461 (976)
++|+.++++.... .+..+..+|++||+.|++ ..|.||+++|+||.+..++ .+..|.|.+....
T Consensus 405 ~~W~~~l~~L~~~---~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~---------- 468 (1153)
T PLN03210 405 EDWMDMLPRLRNG---LDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV---------- 468 (1153)
T ss_pred HHHHHHHHHHHhC---ccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----------
Confidence 9999999875432 235799999999999987 5999999999999986543 4677887765431
Q ss_pred HHHHHHHHHHhcCCccccccCCCCcEeEEEechhHHHHHHHhhhhhce------EeecCCCCCcccccccccCceeEEEE
Q 002044 462 IGEGYFDYLATRSFFQEFEKDEAGIVRRCKMHDIVHDFAQFLTKKEYA------AVEIDGDEEPLSLINTSQEKLRHLML 535 (976)
Q Consensus 462 ~~~~~~~~L~~r~ll~~~~~~~~~~~~~~~mHdlv~~l~~~~~~~e~~------~~~~~~~~~~~~~~~~~~~~~r~l~~ 535 (976)
+..++.|++++|++... .++.|||++|+||+.+.+.+.. ..............+....+++++++
T Consensus 469 --~~~l~~L~~ksLi~~~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l 539 (1153)
T PLN03210 469 --NIGLKNLVDKSLIHVRE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITL 539 (1153)
T ss_pred --hhChHHHHhcCCEEEcC-------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEe
Confidence 11278899999997642 2489999999999999876531 11000000000111224456777777
Q ss_pred EccCCCCC---cccccccCceeEEEecCcccchh--hhHHHHHHHHhcC-CCcceEEecCccc----------------c
Q 002044 536 VLGYKNSF---PVSIFYARKLRSLMLSYNTLNQK--ASAQVLQGLFDQL-TGLRVLRIEGMKS----------------L 593 (976)
Q Consensus 536 ~~~~~~~~---~~~~~~~~~Lr~L~l~~~~~~~~--~~~~~~~~~~~~l-~~Lr~L~L~~~~~----------------l 593 (976)
........ ...+..+++|+.|.+..+..... .... ++.-|..+ .+||.|++.+++. +
T Consensus 540 ~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~-lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L 618 (1153)
T PLN03210 540 DIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWH-LPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQM 618 (1153)
T ss_pred ccCccceeeecHHHHhcCccccEEEEecccccccccceee-cCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEEC
Confidence 65444322 34466778888887765432110 0001 11112222 2455555552110 0
Q ss_pred cCCCCcccCccccCCCccceecCc---cccccCccccccCCccEEecCCCCCCcccchhhcccCCCcEEEe-cccccccC
Q 002044 594 IGSGTNEIPKGIKKLRHLRYLKLY---LVEKLPETCCELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMF-EVDYLEYM 669 (976)
Q Consensus 594 ~~~~~~~lp~~i~~L~~Lr~L~L~---~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l-~~~~l~~l 669 (976)
.++.+..+|..+..+.+|++|+|+ .+..+|. ++.+++|++|+|++|..+..+|..++++++|++|++ .|+.+..+
T Consensus 619 ~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~L 697 (1153)
T PLN03210 619 QGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEIL 697 (1153)
T ss_pred cCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCcc
Confidence 033344455555555555555551 2344442 445555555555555555555555555555555555 34455555
Q ss_pred cccccCCCCCCcCCceEEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCC
Q 002044 670 PKGIERLTSLRTLSEFVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKE 749 (976)
Q Consensus 670 p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 749 (976)
|.++ ++++|+.|.+..+. .....|.. ...|. .+.+.+.. +..+ .. ...+.+|+.|.+..+..
T Consensus 698 p~~i-~l~sL~~L~Lsgc~-~L~~~p~~---~~nL~-------~L~L~~n~-i~~l----P~-~~~l~~L~~L~l~~~~~ 759 (1153)
T PLN03210 698 PTGI-NLKSLYRLNLSGCS-RLKSFPDI---STNIS-------WLDLDETA-IEEF----PS-NLRLENLDELILCEMKS 759 (1153)
T ss_pred CCcC-CCCCCCEEeCCCCC-Cccccccc---cCCcC-------eeecCCCc-cccc----cc-cccccccccccccccch
Confidence 5544 45555554432221 11100000 00111 11111100 0000 00 11234555555543221
Q ss_pred CCCCCCccchhhHHHH-hhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCCCCCCCCCcceeecc
Q 002044 750 APVGMKDENEANHEAV-CEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMPALGILPSLEVLKIR 828 (976)
Q Consensus 750 ~~~~~~~~~~~~~~~~-~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~ 828 (976)
...+ ...... ......+++|+.|+|++|.....+|.+++.+++|+.|+|++|..++.+|....+++|+.|+|+
T Consensus 760 ~~l~------~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls 833 (1153)
T PLN03210 760 EKLW------ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLS 833 (1153)
T ss_pred hhcc------ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECC
Confidence 0000 000000 001123568999999998766655888999999999999999888888876689999999999
Q ss_pred ccccceEeCc
Q 002044 829 FMKSVKRVGN 838 (976)
Q Consensus 829 ~~~~l~~~~~ 838 (976)
+|..+..++.
T Consensus 834 ~c~~L~~~p~ 843 (1153)
T PLN03210 834 GCSRLRTFPD 843 (1153)
T ss_pred CCCccccccc
Confidence 9987766553
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1e-41 Score=369.05 Aligned_cols=267 Identities=39% Similarity=0.638 Sum_probs=212.3
Q ss_pred chhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-----------HHHHHHhC
Q 002044 179 RVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-----------SIIEALEG 247 (976)
Q Consensus 179 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-----------~~~~~l~~ 247 (976)
||.++++|.+.|.... ++.++|+|+||||+||||||++++++..++.+|+.++|+.+ .++..+..
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998643 47899999999999999999999997668999999999987 45555554
Q ss_pred CCC---CcccHHHHHHHHHHHHcCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCchhhhhccCC-cceEec
Q 002044 248 FAP---NLGELNSLLLRIDAFIARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKETVARMMES-TDVIFI 323 (976)
Q Consensus 248 ~~~---~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~-~~~~~l 323 (976)
... ...+.......+.+.|+++++||||||||+. ..|+.+...++....|++||||||+..++..+.. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 422 4456778999999999999999999999865 5788888888887789999999999999877654 679999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHHhhhhccCCCHHHHHHHHhhhhhhhhh---hh
Q 002044 324 KELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTIGSLLRFKRTREEWQSILDSEIWQLEE---FE 400 (976)
Q Consensus 324 ~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~---~~ 400 (976)
++|+.++|++||++.++... ....+...+.+++|+++|+|+||||+++|++|+.+.+..+|..+++.......+ ..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999987544 223455577889999999999999999999997666778999988765544432 34
Q ss_pred hhhhHHHHhhhcCCcHHHHHHHhhhcccCCCceeChHHHHHHHHHcCccccc
Q 002044 401 KGLLAPLLLSYNDLPTIIKQCFLYCAVFPKDCFLERDELIKLWMAQGYIVQK 452 (976)
Q Consensus 401 ~~~~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~ 452 (976)
..+..++.+||+.||++.|.||+|||+||+++.|+++.|+++|+|+|||...
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 6799999999999999999999999999999999999999999999999764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=3.8e-25 Score=280.44 Aligned_cols=409 Identities=19% Similarity=0.181 Sum_probs=209.4
Q ss_pred ceeEEEEEccCCC-CCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCC-cccCcccc
Q 002044 529 KLRHLMLVLGYKN-SFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGT-NEIPKGIK 606 (976)
Q Consensus 529 ~~r~l~~~~~~~~-~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~-~~lp~~i~ 606 (976)
+++.+.+..+... .+|..+.++++|++|++++|.+.+.. +..+.++++|++|+|++ +.+ ..+|..++
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~L~~------n~l~~~~p~~l~ 233 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI-----PRELGQMKSLKWIYLGY------NNLSGEIPYEIG 233 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcC-----ChHHcCcCCccEEECcC------CccCCcCChhHh
Confidence 4455555444332 23444455555555555555433221 22245555555555552 222 13455555
Q ss_pred CCCccceecC--ccc-cccCccccccCCccEEecCCCCCCcccchhhcccCCCcEEEecccccc-cCcccccCCCCCCcC
Q 002044 607 KLRHLRYLKL--YLV-EKLPETCCELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLE-YMPKGIERLTSLRTL 682 (976)
Q Consensus 607 ~L~~Lr~L~L--~~~-~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L 682 (976)
++.+|++|++ +.+ ..+|..++++++|++|++++|.....+|..+.++++|++|+++.|.+. .+|..++++++|+.|
T Consensus 234 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 313 (968)
T PLN00113 234 GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEIL 313 (968)
T ss_pred cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEE
Confidence 5555555555 222 245555555555566655555533345555555555666655444443 344445555555555
Q ss_pred CceEEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCC---CCCCc---
Q 002044 683 SEFVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAP---VGMKD--- 756 (976)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~---~~~~~--- 756 (976)
.+..+. ..+..+.....+..|+ .+.+.+.. ........+..+.+|+.|+++++.... .....
T Consensus 314 ~l~~n~-~~~~~~~~~~~l~~L~-------~L~L~~n~----l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~ 381 (968)
T PLN00113 314 HLFSNN-FTGKIPVALTSLPRLQ-------VLQLWSNK----FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN 381 (968)
T ss_pred ECCCCc-cCCcCChhHhcCCCCC-------EEECcCCC----CcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence 443332 2222222222222222 12221111 001111223445566666665543210 00000
Q ss_pred -----c-chhhHHHHhhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCCC-CCCCCCcceeeccc
Q 002044 757 -----E-NEANHEAVCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMPA-LGILPSLEVLKIRF 829 (976)
Q Consensus 757 -----~-~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~ 829 (976)
. .......++..+..+++|+.|++.+|.+....|..+..+++|+.|+|++|.....++. +..+++|+.|++++
T Consensus 382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 461 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461 (968)
T ss_pred CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence 0 0000011222334455666666666665544455566666666666666654444332 44566777777776
Q ss_pred cccceEeCccccCCCcCcccccccCCCCCCCCCccCccCCccceeeecccccccccccCCCccccCCCcceEeeecCCCC
Q 002044 830 MKSVKRVGNEFLGTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKL 909 (976)
Q Consensus 830 ~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L 909 (976)
|.....++.. .+...+..+++++|.+....+.. ...+++|+.|.+.++ ......|..+..+++|+.|+|++|...
T Consensus 462 n~~~~~~p~~-~~~~~L~~L~ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N---~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 536 (968)
T PLN00113 462 NKFFGGLPDS-FGSKRLENLDLSRNQFSGAVPRK-LGSLSELMQLKLSEN---KLSGEIPDELSSCKKLVSLDLSHNQLS 536 (968)
T ss_pred ceeeeecCcc-cccccceEEECcCCccCCccChh-hhhhhccCEEECcCC---cceeeCChHHcCccCCCEEECCCCccc
Confidence 6644444432 23344566666666665443321 123455555555442 222233444667888888888888766
Q ss_pred CCCCcCCCCCCCCCeEEEccCcchHHhhccCCCCCcccccCCCceeecccccccCcchhhc
Q 002044 910 NSLPDQLLQSTTLEELEIIRCPILEERFKKDTGEDWSKITHIPKIKIHGEYVQGSPPLLKS 970 (976)
Q Consensus 910 ~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~n~~~~~~~~~~~ 970 (976)
..+|..+.++++|+.|++++| .+....+..+..+..+..+++++|.+.+.+|....
T Consensus 537 ~~~p~~~~~l~~L~~L~Ls~N-----~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~ 592 (968)
T PLN00113 537 GQIPASFSEMPVLSQLDLSQN-----QLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGA 592 (968)
T ss_pred ccCChhHhCcccCCEEECCCC-----cccccCChhHhcCcccCEEeccCCcceeeCCCcch
Confidence 677877888888888888888 44445566666777888888888888888886543
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=7.2e-25 Score=277.90 Aligned_cols=407 Identities=20% Similarity=0.215 Sum_probs=205.8
Q ss_pred CceeEEEEEccCCCCCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCC-cccCcccc
Q 002044 528 EKLRHLMLVLGYKNSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGT-NEIPKGIK 606 (976)
Q Consensus 528 ~~~r~l~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~-~~lp~~i~ 606 (976)
.+++++.+..+...... ....+++|++|++++|.+.+.. +..+..+++|++|+|++ +.+ ..+|..++
T Consensus 118 ~~L~~L~Ls~n~l~~~~-p~~~l~~L~~L~Ls~n~~~~~~-----p~~~~~l~~L~~L~L~~------n~l~~~~p~~~~ 185 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSI-PRGSIPNLETLDLSNNMLSGEI-----PNDIGSFSSLKVLDLGG------NVLVGKIPNSLT 185 (968)
T ss_pred CCCCEEECcCCcccccc-CccccCCCCEEECcCCcccccC-----ChHHhcCCCCCEEECcc------CcccccCChhhh
Confidence 34555555544433211 1123455566666555543221 22245555566666553 222 23455555
Q ss_pred CCCccceecC--ccc-cccCccccccCCccEEecCCCCCCcccchhhcccCCCcEEEecccccc-cCcccccCCCCCCcC
Q 002044 607 KLRHLRYLKL--YLV-EKLPETCCELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLE-YMPKGIERLTSLRTL 682 (976)
Q Consensus 607 ~L~~Lr~L~L--~~~-~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L 682 (976)
++.+|++|+| +.+ ..+|..++++.+|++|++++|.....+|..++++++|++|++++|.+. .+|..++++++|+.|
T Consensus 186 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 265 (968)
T PLN00113 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYL 265 (968)
T ss_pred hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEE
Confidence 5555555555 122 234555555555555555555533345555555555555555444443 344555555555555
Q ss_pred CceEEecCCCCCCCcccccccccccc------------------cCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEE
Q 002044 683 SEFVVVNGSGKYGSKACNLEGLRYLN------------------HLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLIL 744 (976)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~l~~L~~L~------------------~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 744 (976)
.+..+. ..+..|.....+..|..|. +|+ .+.+.+.. ........+..+++|+.|++
T Consensus 266 ~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~-~L~l~~n~----~~~~~~~~~~~l~~L~~L~L 339 (968)
T PLN00113 266 FLYQNK-LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLE-ILHLFSNN----FTGKIPVALTSLPRLQVLQL 339 (968)
T ss_pred ECcCCe-eeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCc-EEECCCCc----cCCcCChhHhcCCCCCEEEC
Confidence 443322 2222222222222222211 111 11111100 00111122445566666766
Q ss_pred EecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCC-CCCCCCCcc
Q 002044 745 RFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMP-ALGILPSLE 823 (976)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~ 823 (976)
+.+... ..++..+..+++|+.|++++|......|.++..+++|+.|++++|.....+| .++.+++|+
T Consensus 340 ~~n~l~------------~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~ 407 (968)
T PLN00113 340 WSNKFS------------GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLR 407 (968)
T ss_pred cCCCCc------------CcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCC
Confidence 655432 1122233445566666666655544335555555555555555554443333 245566666
Q ss_pred eeeccccccceEeCccccCCCcCcccccccCCCCCCCCCccCccCCccceeeecccc--------------------ccc
Q 002044 824 VLKIRFMKSVKRVGNEFLGTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLD--------------------EWE 883 (976)
Q Consensus 824 ~L~L~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~--------------------~l~ 883 (976)
.|++++|.....++..+.....+..+++++|.+.+..... ...+++|+.|.+.++. ++.
T Consensus 408 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~ 486 (968)
T PLN00113 408 RVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSR-KWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQ 486 (968)
T ss_pred EEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChh-hccCCCCcEEECcCceeeeecCcccccccceEEECcCCc
Confidence 6666665533344444444444445555554443322211 1123444444333321 111
Q ss_pred ccccCCCccccCCCcceEeeecCCCCCCCCcCCCCCCCCCeEEEccCcchHHhhccCCCCCcccccCCCceeeccccccc
Q 002044 884 EWDFGKEDITIMPQLSSMKISYCSKLNSLPDQLLQSTTLEELEIIRCPILEERFKKDTGEDWSKITHIPKIKIHGEYVQG 963 (976)
Q Consensus 884 ~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~n~~~~ 963 (976)
.....+..+..+++|+.|++++|.....+|..+.++++|+.|++++| .+....+..+..++.+..+++++|.+.+
T Consensus 487 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-----~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 561 (968)
T PLN00113 487 FSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN-----QLSGQIPASFSEMPVLSQLDLSQNQLSG 561 (968)
T ss_pred cCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCC-----cccccCChhHhCcccCCEEECCCCcccc
Confidence 11223344567888889999988766678888888889999999988 5555566677788899999999999998
Q ss_pred Ccchhhc
Q 002044 964 SPPLLKS 970 (976)
Q Consensus 964 ~~~~~~~ 970 (976)
.+|..+.
T Consensus 562 ~~p~~l~ 568 (968)
T PLN00113 562 EIPKNLG 568 (968)
T ss_pred cCChhHh
Confidence 8876543
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=1.1e-22 Score=217.59 Aligned_cols=343 Identities=24% Similarity=0.253 Sum_probs=246.3
Q ss_pred ccCceeEEEEEccCCCCCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccc
Q 002044 526 SQEKLRHLMLVLGYKNSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGI 605 (976)
Q Consensus 526 ~~~~~r~l~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i 605 (976)
....++.+.+.......+|..+..+.+|..|.+..|.+.. +.+-++.++.||.+++..+. +. -..+|..|
T Consensus 30 qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~------vhGELs~Lp~LRsv~~R~N~-LK---nsGiP~di 99 (1255)
T KOG0444|consen 30 QMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLIS------VHGELSDLPRLRSVIVRDNN-LK---NSGIPTDI 99 (1255)
T ss_pred HhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHh------hhhhhccchhhHHHhhhccc-cc---cCCCCchh
Confidence 3456777888777777788888889999999988887432 22336788889999888431 11 23478889
Q ss_pred cCCCccceecC--ccccccCccccccCCccEEecCCCCCCcccchh-hcccCCCcEEEecccccccCcccccCCCCCCcC
Q 002044 606 KKLRHLRYLKL--YLVEKLPETCCELLNLQTLNMCGSPGLKRLPQG-IGKLINLRHLMFEVDYLEYMPKGIERLTSLRTL 682 (976)
Q Consensus 606 ~~L~~Lr~L~L--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 682 (976)
-.|..|..||| +.+.+.|..+..-+++-+|+|++|+ +..+|.. +.+|+-|-.|+|+.|.+..+|+.+.+|.+||+|
T Consensus 100 F~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 100 FRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTL 178 (1255)
T ss_pred cccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhh
Confidence 99999999999 7889999999999999999999997 9999976 478999999999999999999999999999999
Q ss_pred CceEEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhH
Q 002044 683 SEFVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANH 762 (976)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 762 (976)
.+.++. . ....+..|+.+..| .+..+.+....-......+..+.+|..++++.+..
T Consensus 179 ~Ls~NP-L------~hfQLrQLPsmtsL----~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L------------- 234 (1255)
T KOG0444|consen 179 KLSNNP-L------NHFQLRQLPSMTSL----SVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL------------- 234 (1255)
T ss_pred hcCCCh-h------hHHHHhcCccchhh----hhhhcccccchhhcCCCchhhhhhhhhccccccCC-------------
Confidence 865443 1 12333344433322 22222221111222334566777888888887653
Q ss_pred HHHhhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccccccceEeCcccc
Q 002044 763 EAVCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMP-ALGILPSLEVLKIRFMKSVKRVGNEFL 841 (976)
Q Consensus 763 ~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~L~~~~~l~~~~~~~~ 841 (976)
..+++.+-..++|..|+|++|.++++ ....+...+|++|+|+.|+. ..+| .++.|++|+.|.+.+++ +.. .
T Consensus 235 p~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQL-t~LP~avcKL~kL~kLy~n~Nk-L~F-----e 306 (1255)
T KOG0444|consen 235 PIVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQL-TVLPDAVCKLTKLTKLYANNNK-LTF-----E 306 (1255)
T ss_pred CcchHHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchh-ccchHHHhhhHHHHHHHhccCc-ccc-----c
Confidence 34566677778899999999888776 44455667889999988854 4444 57888889888887765 321 1
Q ss_pred CCCcCcccccccCCCCCCCCCccCccCCccceeeecccccccccccCCCccccCCCcceEeeecCCCCCCCCcCCCCCCC
Q 002044 842 GTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNSLPDQLLQSTT 921 (976)
Q Consensus 842 ~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~ 921 (976)
|.+ .++.+|..|+.....+ +.+...|++++.++.|+.|.+..+ .|-.+|+.+.-++.
T Consensus 307 GiP---------------------SGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~N-rLiTLPeaIHlL~~ 363 (1255)
T KOG0444|consen 307 GIP---------------------SGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHN-RLITLPEAIHLLPD 363 (1255)
T ss_pred CCc---------------------cchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhccccc-ceeechhhhhhcCC
Confidence 211 1445555555544332 345555777888999999999865 48889999988999
Q ss_pred CCeEEEccCcchH
Q 002044 922 LEELEIIRCPILE 934 (976)
Q Consensus 922 L~~L~l~~c~~l~ 934 (976)
|+.|+++++|+|.
T Consensus 364 l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 364 LKVLDLRENPNLV 376 (1255)
T ss_pred cceeeccCCcCcc
Confidence 9999999999875
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=2.3e-20 Score=199.11 Aligned_cols=358 Identities=18% Similarity=0.243 Sum_probs=171.8
Q ss_pred CceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccccC-cccc
Q 002044 551 RKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLP-ETCC 627 (976)
Q Consensus 551 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp-~~i~ 627 (976)
+..++|++++|.++.... .+|.++++|+.+++. .+.+..+|.......||+.|+| +.|.++. +++.
T Consensus 78 ~~t~~LdlsnNkl~~id~-----~~f~nl~nLq~v~l~------~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~ 146 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDF-----EFFYNLPNLQEVNLN------KNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELS 146 (873)
T ss_pred cceeeeeccccccccCcH-----HHHhcCCcceeeeec------cchhhhcccccccccceeEEeeeccccccccHHHHH
Confidence 445667777776544332 226667777777776 5566666666666666777766 4444443 3455
Q ss_pred ccCCccEEecCCCCCCcccchh-hcccCCCcEEEecccccccCcc-cccCCCCCCcCCceEEecCCCCCCCccccccccc
Q 002044 628 ELLNLQTLNMCGSPGLKRLPQG-IGKLINLRHLMFEVDYLEYMPK-GIERLTSLRTLSEFVVVNGSGKYGSKACNLEGLR 705 (976)
Q Consensus 628 ~L~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~ 705 (976)
.++.|++|||+.|. +.++|.. +-.-.++++|+|+.|.++.+-. .+..+.+|-+|.+..+. .+...+..+..+..|+
T Consensus 147 ~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~ 224 (873)
T KOG4194|consen 147 ALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLE 224 (873)
T ss_pred hHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhh
Confidence 56666666666665 5555432 3334566666666666655542 24455555555544332 2211111122233333
Q ss_pred ccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEeecCC
Q 002044 706 YLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITGFKG 785 (976)
Q Consensus 706 ~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 785 (976)
.|.--+..+.+. ....+.++.+|+.|.|..+...... -..+-.+.+++.|+|..|..
T Consensus 225 ~LdLnrN~iriv-----------e~ltFqgL~Sl~nlklqrN~I~kL~------------DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 225 SLDLNRNRIRIV-----------EGLTFQGLPSLQNLKLQRNDISKLD------------DGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred hhhccccceeee-----------hhhhhcCchhhhhhhhhhcCccccc------------Ccceeeecccceeecccchh
Confidence 331111111111 0112333334444444333221000 01122234444444444444
Q ss_pred CCCCcccccccccccEEEEeCCCCCC-CCCCCCCCCCcceeeccccccceEeCcc-ccCCCcCcccccccCCCCCCCCCc
Q 002044 786 RTLMLSWIVSLNKLKKLRLLFCDKCE-VMPALGILPSLEVLKIRFMKSVKRVGNE-FLGTEISDHIHIQDGSMSSSSSSS 863 (976)
Q Consensus 786 ~~~~p~~~~~l~~L~~L~L~~~~~~~-~l~~l~~L~~L~~L~L~~~~~l~~~~~~-~~~~~~~~~l~l~~~~~~~~~~~~ 863 (976)
...--.|+-.+.+|+.|+|++|.... .+......++|+.|+|+.+. +..++++ +.+...++.+.+++|++.....
T Consensus 282 ~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e-- 358 (873)
T KOG4194|consen 282 QAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHNSIDHLAE-- 358 (873)
T ss_pred hhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccc-cccCChhHHHHHHHhhhhcccccchHHHHh--
Confidence 44333444444444444544443221 12223344444555554443 3333322 2222333444444444332221
Q ss_pred cCccCCccceeeeccccccc-ccccCC--CccccCCCcceEeeecCCCCCCCC-cCCCCCCCCCeEEEccCcchHHhhcc
Q 002044 864 ANIAFPKLKELKFFCLDEWE-EWDFGK--EDITIMPQLSSMKISYCSKLNSLP-DQLLQSTTLEELEIIRCPILEERFKK 939 (976)
Q Consensus 864 ~~~~fp~L~~L~l~~l~~l~-~~~~~~--~~~~~l~~L~~L~l~~c~~L~~lp-~~l~~l~~L~~L~l~~c~~l~~~~~~ 939 (976)
..|..|+.|+..++.+++ .|.++. ..+..||+|++|.+.++. ++++| ..+.++.+|++|++.++ .+..
T Consensus 359 --~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~N-----aiaS 430 (873)
T KOG4194|consen 359 --GAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDN-----AIAS 430 (873)
T ss_pred --hHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeecchhhhccCcccceecCCCC-----ccee
Confidence 245555555555555554 343332 224568888888888764 88887 45667788888888887 3333
Q ss_pred CCCCCcccccCCCceee
Q 002044 940 DTGEDWSKITHIPKIKI 956 (976)
Q Consensus 940 ~~~~~~~~i~~l~~l~~ 956 (976)
.-+..|..+ ++..+.+
T Consensus 431 Iq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 431 IQPNAFEPM-ELKELVM 446 (873)
T ss_pred ecccccccc-hhhhhhh
Confidence 344445555 5555544
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.79 E-value=1.3e-21 Score=209.39 Aligned_cols=336 Identities=24% Similarity=0.235 Sum_probs=241.9
Q ss_pred ccCceeEEEEEccCCCCCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccc
Q 002044 526 SQEKLRHLMLVLGYKNSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGI 605 (976)
Q Consensus 526 ~~~~~r~l~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i 605 (976)
...++.|+++.++....+...+..++.||++++..|.+.... +|..+-.++.|.+|||+ .+.+.+.|..+
T Consensus 53 ~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsG----iP~diF~l~dLt~lDLS------hNqL~EvP~~L 122 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSG----IPTDIFRLKDLTILDLS------HNQLREVPTNL 122 (1255)
T ss_pred HHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCC----CCchhcccccceeeecc------hhhhhhcchhh
Confidence 446788889888888777778888999999999888754322 22236678999999999 78888999999
Q ss_pred cCCCccceecC--ccccccCccc-cccCCccEEecCCCCCCcccchhhcccCCCcEEEecccccccCc-ccccCCCCCCc
Q 002044 606 KKLRHLRYLKL--YLVEKLPETC-CELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLEYMP-KGIERLTSLRT 681 (976)
Q Consensus 606 ~~L~~Lr~L~L--~~~~~lp~~i-~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~ 681 (976)
..-+++-.|+| ++|+.+|.++ -+|..|-.|||++|. +..+|+.+..|.+|+.|.|++|.+..+. ..+..|++|++
T Consensus 123 E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~v 201 (1255)
T KOG0444|consen 123 EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSV 201 (1255)
T ss_pred hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhh
Confidence 99999999999 7899999764 489999999999998 9999999999999999999888776432 23445666676
Q ss_pred CCceEEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhh
Q 002044 682 LSEFVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEAN 761 (976)
Q Consensus 682 L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 761 (976)
|.+..........|.+...+.+|..+ .+.-.+++.+ ..++-++.+|+.|+|+.+......
T Consensus 202 Lhms~TqRTl~N~Ptsld~l~NL~dv-----DlS~N~Lp~v-------Pecly~l~~LrrLNLS~N~iteL~-------- 261 (1255)
T KOG0444|consen 202 LHMSNTQRTLDNIPTSLDDLHNLRDV-----DLSENNLPIV-------PECLYKLRNLRRLNLSGNKITELN-------- 261 (1255)
T ss_pred hhcccccchhhcCCCchhhhhhhhhc-----cccccCCCcc-------hHHHhhhhhhheeccCcCceeeee--------
Confidence 66554432223334333333333333 2222223222 234567789999999987533111
Q ss_pred HHHHhhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCC-CCCCC-CCCCCCCcceeeccccccceEeCcc
Q 002044 762 HEAVCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDK-CEVMP-ALGILPSLEVLKIRFMKSVKRVGNE 839 (976)
Q Consensus 762 ~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~-~~~l~-~l~~L~~L~~L~L~~~~~l~~~~~~ 839 (976)
-......+|++|+++.|..+.+ |..+..+++|++|.+.+|+. .+.+| .+|.|..|+.+...++. ++-+|++
T Consensus 262 -----~~~~~W~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPEg 334 (1255)
T KOG0444|consen 262 -----MTEGEWENLETLNLSRNQLTVL-PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEG 334 (1255)
T ss_pred -----ccHHHHhhhhhhccccchhccc-hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCchh
Confidence 1112346899999999998877 99999999999999999863 34455 59999999999998775 7777765
Q ss_pred ccCCCcCcccccccCCCCCCCCCccCccCCccceeeecccccccccccCCCccccCCCcceEeeecCCCCCCCCcCCCCC
Q 002044 840 FLGTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNSLPDQLLQS 919 (976)
Q Consensus 840 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l 919 (976)
+. .+++|+.|.+.. +.+...|++++-+|.|+.|+++.+|+|-..|.--..-
T Consensus 335 lc-------------------------RC~kL~kL~L~~----NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~ 385 (1255)
T KOG0444|consen 335 LC-------------------------RCVKLQKLKLDH----NRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDAR 385 (1255)
T ss_pred hh-------------------------hhHHHHHhcccc----cceeechhhhhhcCCcceeeccCCcCccCCCCcchhh
Confidence 43 467888887754 3345557778899999999999999988766432222
Q ss_pred CCCCeEEEc
Q 002044 920 TTLEELEII 928 (976)
Q Consensus 920 ~~L~~L~l~ 928 (976)
++|+--+|.
T Consensus 386 ~~lefYNID 394 (1255)
T KOG0444|consen 386 KKLEFYNID 394 (1255)
T ss_pred hcceeeecc
Confidence 455554443
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=3.7e-22 Score=203.80 Aligned_cols=238 Identities=26% Similarity=0.250 Sum_probs=171.8
Q ss_pred ceeEEEEEccCCCCCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCC
Q 002044 529 KLRHLMLVLGYKNSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKL 608 (976)
Q Consensus 529 ~~r~l~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L 608 (976)
.+..+.++.+...+.|+++..+..+..|+.+.|.+.. ++.-...+..|+.|+.+ .+.+.++|++|+.+
T Consensus 69 ~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~------lp~~i~s~~~l~~l~~s------~n~~~el~~~i~~~ 136 (565)
T KOG0472|consen 69 CLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSE------LPEQIGSLISLVKLDCS------SNELKELPDSIGRL 136 (565)
T ss_pred ceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhh------ccHHHhhhhhhhhhhcc------ccceeecCchHHHH
Confidence 3445666667677778888888888888888887432 33336777888888888 77788899999999
Q ss_pred CccceecC--ccccccCccccccCCccEEecCCCCCCcccchhhcccCCCcEEEecccccccCcccccCCCCCCcCCceE
Q 002044 609 RHLRYLKL--YLVEKLPETCCELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLEYMPKGIERLTSLRTLSEFV 686 (976)
Q Consensus 609 ~~Lr~L~L--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~ 686 (976)
..|..|+. +++..+|+.++.+.+|..|++.++. ++++|+....++.|+||+...|.++.+|+.++.|.+|..|++..
T Consensus 137 ~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~ 215 (565)
T KOG0472|consen 137 LDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRR 215 (565)
T ss_pred hhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhh
Confidence 99998888 6889999999999999999999987 88888887779999999998888999999999999998887655
Q ss_pred EecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhHHHHh
Q 002044 687 VVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHEAVC 766 (976)
Q Consensus 687 ~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 766 (976)
+. ....| .+..+..|+.| . +.. ..+.......++.+.+|..|++..+. ..+++
T Consensus 216 Nk--i~~lP-ef~gcs~L~El---h--~g~------N~i~~lpae~~~~L~~l~vLDLRdNk-------------lke~P 268 (565)
T KOG0472|consen 216 NK--IRFLP-EFPGCSLLKEL---H--VGE------NQIEMLPAEHLKHLNSLLVLDLRDNK-------------LKEVP 268 (565)
T ss_pred cc--cccCC-CCCccHHHHHH---H--hcc------cHHHhhHHHHhcccccceeeeccccc-------------cccCc
Confidence 43 12122 22333333332 1 000 11111122334566777788887654 24556
Q ss_pred hcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCC
Q 002044 767 EALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCD 808 (976)
Q Consensus 767 ~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~ 808 (976)
+.+..+.+|++|++++|.+..+ |..++++ .|+.|.+.+|+
T Consensus 269 de~clLrsL~rLDlSNN~is~L-p~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 269 DEICLLRSLERLDLSNNDISSL-PYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred hHHHHhhhhhhhcccCCccccC-Ccccccc-eeeehhhcCCc
Confidence 6666677888888888887776 7778877 78888887765
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.76 E-value=9.7e-18 Score=212.56 Aligned_cols=337 Identities=21% Similarity=0.220 Sum_probs=177.6
Q ss_pred HHHHhcCCCcceEEecCccccc-CCCCcccCccccCCC-ccceecC--ccccccCccccccCCccEEecCCCCCCcccch
Q 002044 573 QGLFDQLTGLRVLRIEGMKSLI-GSGTNEIPKGIKKLR-HLRYLKL--YLVEKLPETCCELLNLQTLNMCGSPGLKRLPQ 648 (976)
Q Consensus 573 ~~~~~~l~~Lr~L~L~~~~~l~-~~~~~~lp~~i~~L~-~Lr~L~L--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~ 648 (976)
...|.++++|+.|.+.....-. ......+|..+..++ +||+|++ +.+..+|..+ ...+|+.|++++|. +..+|.
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~-l~~L~~ 628 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK-LEKLWD 628 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc-cccccc
Confidence 3448999999999996431000 001123455555443 3666666 4455566554 34566666666654 555665
Q ss_pred hhcccCCCcEEEec-ccccccCcccccCCCCCCcCCceEEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhh
Q 002044 649 GIGKLINLRHLMFE-VDYLEYMPKGIERLTSLRTLSEFVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDE 727 (976)
Q Consensus 649 ~i~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~ 727 (976)
++..+++|+.|+++ ++.+..+| .++.+++|++|.+..+. .....|.. + .+|++|+ .+.+.++.++..+..
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~-~L~~lp~s---i---~~L~~L~-~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCS-SLVELPSS---I---QYLNKLE-DLDMSRCENLEILPT 699 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCC-Cccccchh---h---hccCCCC-EEeCCCCCCcCccCC
Confidence 56666666666663 33344454 25555555555443322 11111111 1 1122222 333333333332211
Q ss_pred HHhccCCCCCCCceEEEEecCCCCCCC--------CccchhhHHHHhhcCCCCCCCceEEEeecCCCCC-------Cccc
Q 002044 728 AKSAHLDKKKNLVVLILRFNKEAPVGM--------KDENEANHEAVCEALQPPPNLESLQITGFKGRTL-------MLSW 792 (976)
Q Consensus 728 ~~~~~l~~~~~L~~L~l~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~-------~p~~ 792 (976)
. .++++|+.|.+++|.....-. ..........++..+ .+++|++|.+.++....+ .|..
T Consensus 700 ----~-i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~ 773 (1153)
T PLN03210 700 ----G-INLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLM 773 (1153)
T ss_pred ----c-CCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhh
Confidence 0 134455555555442110000 000000000111111 234455555544322111 0111
Q ss_pred ccccccccEEEEeCCCCCCCCCC-CCCCCCcceeeccccccceEeCccccCCCcCcccccccCCCCCCCCCccCccCCcc
Q 002044 793 IVSLNKLKKLRLLFCDKCEVMPA-LGILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIHIQDGSMSSSSSSSANIAFPKL 871 (976)
Q Consensus 793 ~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L 871 (976)
...+++|+.|+|++|.....+|. ++++++|+.|+|++|..++.+|... ....+..+++++|......+. ..++|
T Consensus 774 ~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~----~~~nL 848 (1153)
T PLN03210 774 TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD----ISTNI 848 (1153)
T ss_pred hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc----ccccc
Confidence 12345788888888876666663 7788888888888888888777654 344455666665543322211 23456
Q ss_pred ceeeecccccccccccCCCccccCCCcceEeeecCCCCCCCCcCCCCCCCCCeEEEccCcchHH
Q 002044 872 KELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNSLPDQLLQSTTLEELEIIRCPILEE 935 (976)
Q Consensus 872 ~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~ 935 (976)
+.|.+.+. . +...|..+..+++|+.|++++|++|..+|..+..+++|+.+++++|+.|..
T Consensus 849 ~~L~Ls~n-~---i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 849 SDLNLSRT-G---IEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred CEeECCCC-C---CccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 66666541 1 223344567899999999999999999998888899999999999988764
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.75 E-value=3e-19 Score=190.79 Aligned_cols=333 Identities=21% Similarity=0.218 Sum_probs=149.8
Q ss_pred eeEEEEEccCCCCCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCc-cccCC
Q 002044 530 LRHLMLVLGYKNSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPK-GIKKL 608 (976)
Q Consensus 530 ~r~l~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~-~i~~L 608 (976)
+..+.+..+....+|.......+|..|++..|.+......+ ++-++.||+|||+ .+.|.++|. ++..=
T Consensus 104 Lq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~-----L~~l~alrslDLS------rN~is~i~~~sfp~~ 172 (873)
T KOG4194|consen 104 LQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEE-----LSALPALRSLDLS------RNLISEIPKPSFPAK 172 (873)
T ss_pred ceeeeeccchhhhcccccccccceeEEeeeccccccccHHH-----HHhHhhhhhhhhh------hchhhcccCCCCCCC
Confidence 33344444444443433333444555555544433222222 3444455555555 344444442 23333
Q ss_pred CccceecC--ccccccC-ccccccCCccEEecCCCCCCcccchh-hcccCCCcEEEecccccccC-cccccCCCCCCcCC
Q 002044 609 RHLRYLKL--YLVEKLP-ETCCELLNLQTLNMCGSPGLKRLPQG-IGKLINLRHLMFEVDYLEYM-PKGIERLTSLRTLS 683 (976)
Q Consensus 609 ~~Lr~L~L--~~~~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~ 683 (976)
.++++|+| +.|..+. ..+..|.+|-+|.|+.|. +..+|.. +.+|++|+.|+|..|.++.+ --.+..|.+|+.|.
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk 251 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK 251 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhh
Confidence 45555555 3444443 234445555555555554 4555443 23355555555555544433 12234444444444
Q ss_pred ceEEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhHH
Q 002044 684 EFVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHE 763 (976)
Q Consensus 684 ~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 763 (976)
+-.++ ........+..+..+..| .|....+. ......+-++..|+.|+++++.....
T Consensus 252 lqrN~-I~kL~DG~Fy~l~kme~l-----~L~~N~l~------~vn~g~lfgLt~L~~L~lS~NaI~ri----------- 308 (873)
T KOG4194|consen 252 LQRND-ISKLDDGAFYGLEKMEHL-----NLETNRLQ------AVNEGWLFGLTSLEQLDLSYNAIQRI----------- 308 (873)
T ss_pred hhhcC-cccccCcceeeeccccee-----ecccchhh------hhhcccccccchhhhhccchhhhhee-----------
Confidence 33222 111111112222222222 11111111 11122333444455555554432210
Q ss_pred HHhhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCC--CCCCCCCcceeeccccccceEeCcccc
Q 002044 764 AVCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMP--ALGILPSLEVLKIRFMKSVKRVGNEFL 841 (976)
Q Consensus 764 ~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~--~l~~L~~L~~L~L~~~~~l~~~~~~~~ 841 (976)
..+.....+.|+.|+|++|.+..+-+..+..++.|+.|+|+.|. ++.+. .+..+++|+.|+|+++.
T Consensus 309 -h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~---------- 376 (873)
T KOG4194|consen 309 -HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNE---------- 376 (873)
T ss_pred -ecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCe----------
Confidence 11222334455555555555555433444445555555555542 12221 13344555555555443
Q ss_pred CCCcCcccccccCCCCCCCCCc--cCccCCccceeeecccccccccccCCCccccCCCcceEeeecCCCCCCC-CcCCCC
Q 002044 842 GTEISDHIHIQDGSMSSSSSSS--ANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNSL-PDQLLQ 918 (976)
Q Consensus 842 ~~~~~~~l~l~~~~~~~~~~~~--~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l-p~~l~~ 918 (976)
+....... ...++|+|++|.+.+ .+++.+. ...+..|++|++|++.+++ +.++ |+.+.+
T Consensus 377 --------------ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~--krAfsgl~~LE~LdL~~Na-iaSIq~nAFe~ 438 (873)
T KOG4194|consen 377 --------------LSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIP--KRAFSGLEALEHLDLGDNA-IASIQPNAFEP 438 (873)
T ss_pred --------------EEEEEecchhhhccchhhhheeecC-ceeeecc--hhhhccCcccceecCCCCc-ceeeccccccc
Confidence 32221110 123578888888876 3343333 3346789999999999988 5554 566666
Q ss_pred CCCCCeEEEc
Q 002044 919 STTLEELEII 928 (976)
Q Consensus 919 l~~L~~L~l~ 928 (976)
+ .|++|.+.
T Consensus 439 m-~Lk~Lv~n 447 (873)
T KOG4194|consen 439 M-ELKELVMN 447 (873)
T ss_pred c-hhhhhhhc
Confidence 6 88887654
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=1.5e-20 Score=192.20 Aligned_cols=344 Identities=18% Similarity=0.182 Sum_probs=187.8
Q ss_pred CCCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecC--cc
Q 002044 541 NSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YL 618 (976)
Q Consensus 541 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~ 618 (976)
...|+....++.|+.|+...|.+.. +|.-++.+..|..|+|. .+.+..+| +|+.+..|+.|.+ +.
T Consensus 173 ~~l~~~~i~m~~L~~ld~~~N~L~t------lP~~lg~l~~L~~LyL~------~Nki~~lP-ef~gcs~L~Elh~g~N~ 239 (565)
T KOG0472|consen 173 KALPENHIAMKRLKHLDCNSNLLET------LPPELGGLESLELLYLR------RNKIRFLP-EFPGCSLLKELHVGENQ 239 (565)
T ss_pred hhCCHHHHHHHHHHhcccchhhhhc------CChhhcchhhhHHHHhh------hcccccCC-CCCccHHHHHHHhcccH
Confidence 3334444446666666665554211 22226667777777777 66666777 6777777777777 67
Q ss_pred ccccCcccc-ccCCccEEecCCCCCCcccchhhcccCCCcEEEecccccccCcccccCCCCCCcCCceEEecCCCCCCCc
Q 002044 619 VEKLPETCC-ELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLEYMPKGIERLTSLRTLSEFVVVNGSGKYGSK 697 (976)
Q Consensus 619 ~~~lp~~i~-~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~ 697 (976)
++.+|..++ +|.+|.+||++.|+ ++++|.+++.+.+|..||+++|.++.+|..+|+| .|+.|.+-.+. ... ....
T Consensus 240 i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP-lrT-iRr~ 315 (565)
T KOG0472|consen 240 IEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP-LRT-IRRE 315 (565)
T ss_pred HHhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc-hHH-HHHH
Confidence 777887766 78888888888887 8888888888888888888888888888888888 77776543322 000 0000
Q ss_pred ccccccccccccCCCceEEcCcCCCCChh-------hHHhccCCCCCCCceEEEEecCCCCCC--CCc-----------c
Q 002044 698 ACNLEGLRYLNHLRGSLKIRGLGNVTDID-------EAKSAHLDKKKNLVVLILRFNKEAPVG--MKD-----------E 757 (976)
Q Consensus 698 ~~~l~~L~~L~~L~~~l~i~~l~~~~~~~-------~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~-----------~ 757 (976)
+-....-.-|+.|+....-.++.+-..-. ...........+.+.|.++........ ... -
T Consensus 316 ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnf 395 (565)
T KOG0472|consen 316 IISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNF 395 (565)
T ss_pred HHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEec
Confidence 00000001112222111111111110000 000111122334555555433211000 000 0
Q ss_pred chhhHHHHhhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccccccceEe
Q 002044 758 NEANHEAVCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMP-ALGILPSLEVLKIRFMKSVKRV 836 (976)
Q Consensus 758 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~L~~~~~l~~~ 836 (976)
......+.+..+.....+.+.-+..++...+.|..++.+++|+.|+|++|.. .++| .++.+..|+.|+|+.+. ...+
T Consensus 396 skNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~L-n~LP~e~~~lv~Lq~LnlS~Nr-Fr~l 473 (565)
T KOG0472|consen 396 SKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLL-NDLPEEMGSLVRLQTLNLSFNR-FRML 473 (565)
T ss_pred ccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchh-hhcchhhhhhhhhheecccccc-cccc
Confidence 0011112222222222222222222333344466666777777777777743 3444 46777777777777763 3333
Q ss_pred CccccCCCcCcccccccCCCCCCCCCccCccCCccceeeecccccccccccCCCccccCCCcceEeeecCCCCCCCCcCC
Q 002044 837 GNEFLGTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNSLPDQL 916 (976)
Q Consensus 837 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l 916 (976)
|.-.+ .++.|++.--.++..-.+.+.++..|.+|..|++.++. +..+|.++
T Consensus 474 P~~~y----------------------------~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNd-lq~IPp~L 524 (565)
T KOG0472|consen 474 PECLY----------------------------ELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND-LQQIPPIL 524 (565)
T ss_pred hHHHh----------------------------hHHHHHHHHhccccccccChHHhhhhhhcceeccCCCc-hhhCChhh
Confidence 33221 22333333223233333334447789999999999876 88999999
Q ss_pred CCCCCCCeEEEccCcc
Q 002044 917 LQSTTLEELEIIRCPI 932 (976)
Q Consensus 917 ~~l~~L~~L~l~~c~~ 932 (976)
+++++|++|+++|+|.
T Consensus 525 gnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 525 GNMTNLRHLELDGNPF 540 (565)
T ss_pred ccccceeEEEecCCcc
Confidence 9999999999999963
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.69 E-value=1.4e-19 Score=203.88 Aligned_cols=397 Identities=23% Similarity=0.321 Sum_probs=228.0
Q ss_pred CCCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecC--cc
Q 002044 541 NSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YL 618 (976)
Q Consensus 541 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~ 618 (976)
..+|..+.....+..|.+..|.+-... .+ +..+.-.|+.||++ ++.+...|..|+.+.+|+.|++ +.
T Consensus 11 ~~ip~~i~~~~~~~~ln~~~N~~l~~p-l~----~~~~~v~L~~l~ls------nn~~~~fp~~it~l~~L~~ln~s~n~ 79 (1081)
T KOG0618|consen 11 ELIPEQILNNEALQILNLRRNSLLSRP-LE----FVEKRVKLKSLDLS------NNQISSFPIQITLLSHLRQLNLSRNY 79 (1081)
T ss_pred cccchhhccHHHHHhhhccccccccCc-hH----HhhheeeeEEeecc------ccccccCCchhhhHHHHhhcccchhh
Confidence 334555555555777887777643322 11 23444459999999 8888899999999999999999 78
Q ss_pred ccccCccccccCCccEEecCCCCCCcccchhhcccCCCcEEEecccccccCcccccCCCCCCcCCceEEecCCCCCCCcc
Q 002044 619 VEKLPETCCELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLEYMPKGIERLTSLRTLSEFVVVNGSGKYGSKA 698 (976)
Q Consensus 619 ~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~ 698 (976)
+..+|.++.++.+|++|+|.+|. +..+|.++..+++|+.|+++.|.+..+|..|..++.+..+....+. .....+...
T Consensus 80 i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~-~~~~lg~~~ 157 (1081)
T KOG0618|consen 80 IRSVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNE-KIQRLGQTS 157 (1081)
T ss_pred HhhCchhhhhhhcchhheeccch-hhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcch-hhhhhcccc
Confidence 99999999999999999998887 9999999999999999999999999999877766666555433221 111000000
Q ss_pred cccccccccccCCCceE--EcCcCC---CCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccc------hhhHHHHhh
Q 002044 699 CNLEGLRYLNHLRGSLK--IRGLGN---VTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDEN------EANHEAVCE 767 (976)
Q Consensus 699 ~~l~~L~~L~~L~~~l~--i~~l~~---~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~------~~~~~~~~~ 767 (976)
-....++ ++.+.+++. +..+.. +.... .....+..+.+|+.+.+..+........+.. .........
T Consensus 158 ik~~~l~-~n~l~~~~~~~i~~l~~~ldLr~N~-~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~ 235 (1081)
T KOG0618|consen 158 IKKLDLR-LNVLGGSFLIDIYNLTHQLDLRYNE-MEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLD 235 (1081)
T ss_pred chhhhhh-hhhcccchhcchhhhheeeecccch-hhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeec
Confidence 0000000 011111111 111111 00000 0012333344444443333221110000000 000000112
Q ss_pred cCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCC----------------------CCC-CCCCCCcce
Q 002044 768 ALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEV----------------------MPA-LGILPSLEV 824 (976)
Q Consensus 768 ~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~----------------------l~~-l~~L~~L~~ 824 (976)
.-.-+.+|++++++.+....+ |+|++.+.+|+.|...+|..... +|. ++.+.+|++
T Consensus 236 ~~p~p~nl~~~dis~n~l~~l-p~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~t 314 (1081)
T KOG0618|consen 236 VHPVPLNLQYLDISHNNLSNL-PEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRT 314 (1081)
T ss_pred cccccccceeeecchhhhhcc-hHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeee
Confidence 223457899999999998887 89999999999999888764222 222 334555666
Q ss_pred eeccccccceEeCccccCCCc--CcccccccCCCCCCCCCccCccCCccceeeecccccccccccCCCccccCCCcceEe
Q 002044 825 LKIRFMKSVKRVGNEFLGTEI--SDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMK 902 (976)
Q Consensus 825 L~L~~~~~l~~~~~~~~~~~~--~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~ 902 (976)
|+|..+. +..+|..++.... +..+..+.+.+....+ .....++.|+.|.+.+ ..+.+-.+. .+..+++|+.|+
T Consensus 315 LdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~-~~e~~~~~Lq~Lylan-N~Ltd~c~p--~l~~~~hLKVLh 389 (1081)
T KOG0618|consen 315 LDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPS-YEENNHAALQELYLAN-NHLTDSCFP--VLVNFKHLKVLH 389 (1081)
T ss_pred eeehhcc-ccccchHHHhhhhHHHHHHhhhhcccccccc-ccchhhHHHHHHHHhc-Ccccccchh--hhccccceeeee
Confidence 6665544 4444443322111 1111112222222221 1123455555555544 222222221 145788999999
Q ss_pred eecCCCCCCCC-cCCCCCCCCCeEEEccCcchHHhhccCCCCCcccccCCCceeecccccccCc
Q 002044 903 ISYCSKLNSLP-DQLLQSTTLEELEIIRCPILEERFKKDTGEDWSKITHIPKIKIHGEYVQGSP 965 (976)
Q Consensus 903 l~~c~~L~~lp-~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~n~~~~~~ 965 (976)
++++. |.++| ..+.++..|++|+++|| ++...+ ....+.+.+.++..++|.+.-.|
T Consensus 390 LsyNr-L~~fpas~~~kle~LeeL~LSGN-----kL~~Lp-~tva~~~~L~tL~ahsN~l~~fP 446 (1081)
T KOG0618|consen 390 LSYNR-LNSFPASKLRKLEELEELNLSGN-----KLTTLP-DTVANLGRLHTLRAHSNQLLSFP 446 (1081)
T ss_pred ecccc-cccCCHHHHhchHHhHHHhcccc-----hhhhhh-HHHHhhhhhHHHhhcCCceeech
Confidence 99875 88888 44677888999999998 444332 34456678888888888887544
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.54 E-value=1.7e-16 Score=179.38 Aligned_cols=391 Identities=20% Similarity=0.253 Sum_probs=185.1
Q ss_pred eeEEEEEccCCCCCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCC
Q 002044 530 LRHLMLVLGYKNSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLR 609 (976)
Q Consensus 530 ~r~l~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~ 609 (976)
+.++.+..+....+|..+..+++|+.|.++.|.+.. .+....++++|++|+|. ++....+|.++..++
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~------vp~s~~~~~~l~~lnL~------~n~l~~lP~~~~~lk 114 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRS------VPSSCSNMRNLQYLNLK------NNRLQSLPASISELK 114 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhhHhh------Cchhhhhhhcchhheec------cchhhcCchhHHhhh
Confidence 445555555555556555566666666666654322 12224556666666666 555555666666666
Q ss_pred ccceecC--ccccccCccccccCCccEEecCCCCCCcccchhhcccCCCcEEEeccccc-ccCcccccCCCCCCcCCceE
Q 002044 610 HLRYLKL--YLVEKLPETCCELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYL-EYMPKGIERLTSLRTLSEFV 686 (976)
Q Consensus 610 ~Lr~L~L--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l-~~lp~~i~~l~~L~~L~~~~ 686 (976)
+|+||++ +.....|..+..+..++.++.++|..+..++... .+++++..+.+ ..++.++..++. +|++..
T Consensus 115 nl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~-----ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~ 187 (1081)
T KOG0618|consen 115 NLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTS-----IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRY 187 (1081)
T ss_pred cccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcccc-----chhhhhhhhhcccchhcchhhhhe--eeeccc
Confidence 6666666 4555555555555555555555553233332211 33333322221 123344444444 233222
Q ss_pred EecCCCCCCCccccccccccc----ccCCCceEEcCcCCCCChhhH---H--hccCCCCCCCceEEEEecCCC--CCCCC
Q 002044 687 VVNGSGKYGSKACNLEGLRYL----NHLRGSLKIRGLGNVTDIDEA---K--SAHLDKKKNLVVLILRFNKEA--PVGMK 755 (976)
Q Consensus 687 ~~~~~~~~~~~~~~l~~L~~L----~~L~~~l~i~~l~~~~~~~~~---~--~~~l~~~~~L~~L~l~~~~~~--~~~~~ 755 (976)
+. ... .....+..|+.+ +++. .+.+.+.. ++.+... . ...-..-.+|+.++++++... +.|+.
T Consensus 188 N~-~~~---~dls~~~~l~~l~c~rn~ls-~l~~~g~~-l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~ 261 (1081)
T KOG0618|consen 188 NE-MEV---LDLSNLANLEVLHCERNQLS-ELEISGPS-LTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIG 261 (1081)
T ss_pred ch-hhh---hhhhhccchhhhhhhhcccc-eEEecCcc-hheeeeccCcceeeccccccccceeeecchhhhhcchHHHH
Confidence 21 000 001111111111 1111 22221110 0000000 0 000011235666666655322 11100
Q ss_pred --------ccchhhHHHHhhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCCC--CCCCC-Ccce
Q 002044 756 --------DENEANHEAVCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMPA--LGILP-SLEV 824 (976)
Q Consensus 756 --------~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~L~-~L~~ 824 (976)
..+......++..+....+|++|.+..|....+ |.....+..|+.|+|..|. +..+|. +.-++ +|..
T Consensus 262 ~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yi-p~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ 339 (1081)
T KOG0618|consen 262 ACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYI-PPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNT 339 (1081)
T ss_pred hcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhC-CCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHH
Confidence 011112233344444555666666666665555 7777778899999998874 344443 11222 2444
Q ss_pred eeccccccceEeCccccCCC---cCcccccccCCCCCCCCCccCccCCccceeeecccccccccccCCCccccCCCcceE
Q 002044 825 LKIRFMKSVKRVGNEFLGTE---ISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSM 901 (976)
Q Consensus 825 L~L~~~~~l~~~~~~~~~~~---~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L 901 (976)
|..+.++ +...+. ++.. .+..+.+.+|.+.... ......|++||.|++.+ ..+..++ ...+..++.|++|
T Consensus 340 ln~s~n~-l~~lp~--~~e~~~~~Lq~LylanN~Ltd~c-~p~l~~~~hLKVLhLsy-NrL~~fp--as~~~kle~LeeL 412 (1081)
T KOG0618|consen 340 LNVSSNK-LSTLPS--YEENNHAALQELYLANNHLTDSC-FPVLVNFKHLKVLHLSY-NRLNSFP--ASKLRKLEELEEL 412 (1081)
T ss_pred Hhhhhcc-cccccc--ccchhhHHHHHHHHhcCcccccc-hhhhccccceeeeeecc-cccccCC--HHHHhchHHhHHH
Confidence 5444333 333221 1111 1223344445444332 22345677888777765 2223232 2234577888888
Q ss_pred eeecCCCCCCCCcCCCCCCCCCeEEEccCcchHHhhccCCCCCcccccCCCceeecccccc
Q 002044 902 KISYCSKLNSLPDQLLQSTTLEELEIIRCPILEERFKKDTGEDWSKITHIPKIKIHGEYVQ 962 (976)
Q Consensus 902 ~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~n~~~ 962 (976)
+++++. |+.+|..+..++.|++|...+| .+...+ +..+.+.|+.+|++.|.++
T Consensus 413 ~LSGNk-L~~Lp~tva~~~~L~tL~ahsN-----~l~~fP--e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 413 NLSGNK-LTTLPDTVANLGRLHTLRAHSN-----QLLSFP--ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred hcccch-hhhhhHHHHhhhhhHHHhhcCC-----ceeech--hhhhcCcceEEecccchhh
Confidence 888875 7777777777777777766665 222211 5556666666666666554
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.42 E-value=1.1e-12 Score=154.25 Aligned_cols=86 Identities=27% Similarity=0.324 Sum_probs=62.3
Q ss_pred CCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccccCccccccCCccEEecCCCCCCcccchhhcccCCCc
Q 002044 580 TGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLPETCCELLNLQTLNMCGSPGLKRLPQGIGKLINLR 657 (976)
Q Consensus 580 ~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~ 657 (976)
..-.+|+|+ .+.+..+|..+.. +|+.|++ +++..+|.. +++|++|++++|. +..+|.. .++|+
T Consensus 201 ~~~~~LdLs------~~~LtsLP~~l~~--~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p~sL~ 265 (788)
T PRK15387 201 NGNAVLNVG------ESGLTTLPDCLPA--HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL---PPGLL 265 (788)
T ss_pred CCCcEEEcC------CCCCCcCCcchhc--CCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc---ccccc
Confidence 456788888 6677788887753 7888888 677778753 5788899998886 7788753 46788
Q ss_pred EEEecccccccCcccccCCCCCCcCC
Q 002044 658 HLMFEVDYLEYMPKGIERLTSLRTLS 683 (976)
Q Consensus 658 ~L~l~~~~l~~lp~~i~~l~~L~~L~ 683 (976)
+|+++.|.+..+|... ++|+.|.
T Consensus 266 ~L~Ls~N~L~~Lp~lp---~~L~~L~ 288 (788)
T PRK15387 266 ELSIFSNPLTHLPALP---SGLCKLW 288 (788)
T ss_pred eeeccCCchhhhhhch---hhcCEEE
Confidence 8888888888777533 3444443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.36 E-value=3.4e-12 Score=150.13 Aligned_cols=107 Identities=21% Similarity=0.253 Sum_probs=58.6
Q ss_pred cCCCCCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecC-
Q 002044 538 GYKNSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL- 616 (976)
Q Consensus 538 ~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L- 616 (976)
+....+|..+. ++|+.|.+.+|.+... + ..+++|++|+|+ ++.+..+|.. ..+|+.|++
T Consensus 211 ~~LtsLP~~l~--~~L~~L~L~~N~Lt~L------P---~lp~~Lk~LdLs------~N~LtsLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 211 SGLTTLPDCLP--AHITTLVIPDNNLTSL------P---ALPPELRTLEVS------GNQLTSLPVL---PPGLLELSIF 270 (788)
T ss_pred CCCCcCCcchh--cCCCEEEccCCcCCCC------C---CCCCCCcEEEec------CCccCcccCc---ccccceeecc
Confidence 33334444332 3566677766654321 1 124567777776 4445555542 245666666
Q ss_pred -ccccccCccccccCCccEEecCCCCCCcccchhhcccCCCcEEEecccccccCcc
Q 002044 617 -YLVEKLPETCCELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLEYMPK 671 (976)
Q Consensus 617 -~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lp~ 671 (976)
+.+..+|... .+|+.|++++|. +..+|.. +++|++|++++|.+..+|.
T Consensus 271 ~N~L~~Lp~lp---~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~L~~Lp~ 319 (788)
T PRK15387 271 SNPLTHLPALP---SGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLASLPA 319 (788)
T ss_pred CCchhhhhhch---hhcCEEECcCCc-ccccccc---ccccceeECCCCccccCCC
Confidence 4455555422 456666776665 6666652 3567777776666666654
No 17
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.28 E-value=2.7e-10 Score=144.37 Aligned_cols=281 Identities=17% Similarity=0.186 Sum_probs=168.3
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH------------HH
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE------------SI 241 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~------------~~ 241 (976)
+.++-|..-.+++.+ ....+++.|+|++|.||||++..+... ++.++|++. .+
T Consensus 14 ~~~~~R~rl~~~l~~---------~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 14 HNTVVRERLLAKLSG---------ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred cccCcchHHHHHHhc---------ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHH
Confidence 456667655444432 235789999999999999999998852 225889866 23
Q ss_pred HHHHhCCCCC-------------cccHHHHHHHHHHHHc--CCceEEEEcCCCCCCccCcHhHHHh-hcCCCCCcEEEEE
Q 002044 242 IEALEGFAPN-------------LGELNSLLLRIDAFIA--RKKFLLILDDVWTDDYSKWEPFRRC-LINGHRESRILVT 305 (976)
Q Consensus 242 ~~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~l~~~-l~~~~~gs~iivT 305 (976)
+..+...... ..+.......+...+. +.+++|||||+..-+......+... +.....+.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 3333211111 0122233333333443 6799999999965443333333333 3334556789999
Q ss_pred cCchhhh---hccCCcceEecC----CCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHHhhhhcc
Q 002044 306 TRKETVA---RMMESTDVIFIK----ELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTIGSLLRF 378 (976)
Q Consensus 306 tR~~~v~---~~~~~~~~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~ 378 (976)
||...-. ..........+. +|+.+|+.++|....... . -.+...+|.+.|+|.|+++..++..++.
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~---~----~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP---I----EAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC---C----CHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 9984321 111112345555 999999999997654211 1 1344567999999999999998877754
Q ss_pred CCC-HHHHHHHHhhhhhhhhh-hhhhhhHHHH-hhhcCCcHHHHHHHhhhcccCCCceeChHHHHHHHHHcCcccccCCc
Q 002044 379 KRT-REEWQSILDSEIWQLEE-FEKGLLAPLL-LSYNDLPTIIKQCFLYCAVFPKDCFLERDELIKLWMAQGYIVQKGNK 455 (976)
Q Consensus 379 ~~~-~~~w~~~l~~~~~~~~~-~~~~~~~~l~-~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~ 455 (976)
... .... . +.+.. ....+...+. -.|+.||++.+..++..|+++. ++.+ +.. .+..
T Consensus 232 ~~~~~~~~---~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~~---~~~~-l~~-----~l~~----- 290 (903)
T PRK04841 232 NNSSLHDS---A----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLRS---MNDA-LIV-----RVTG----- 290 (903)
T ss_pred CCCchhhh---h----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccccc---CCHH-HHH-----HHcC-----
Confidence 321 1110 0 11111 1123444443 3478999999999999999873 4433 221 1111
Q ss_pred hhhHHHHHHHHHHHHHhcCCccccccCCCCcEeEEEechhHHHHHHHhh
Q 002044 456 EMEMEMIGEGYFDYLATRSFFQEFEKDEAGIVRRCKMHDIVHDFAQFLT 504 (976)
Q Consensus 456 ~~~~~~~~~~~~~~L~~r~ll~~~~~~~~~~~~~~~mHdlv~~l~~~~~ 504 (976)
.+.+...+++|.+.+++...... .+ .+|++|++++++.....
T Consensus 291 ----~~~~~~~L~~l~~~~l~~~~~~~-~~--~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 ----EENGQMRLEELERQGLFIQRMDD-SG--EWFRYHPLFASFLRHRC 332 (903)
T ss_pred ----CCcHHHHHHHHHHCCCeeEeecC-CC--CEEehhHHHHHHHHHHH
Confidence 11235678899999987532211 11 35778999999987654
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.22 E-value=1.3e-11 Score=146.30 Aligned_cols=244 Identities=20% Similarity=0.244 Sum_probs=130.6
Q ss_pred CCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccccCccccccCCccEEecCCCCCCcccchhhcccCCCc
Q 002044 580 TGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLPETCCELLNLQTLNMCGSPGLKRLPQGIGKLINLR 657 (976)
Q Consensus 580 ~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~ 657 (976)
.+..+|+++ +..+..+|..+. .+|+.|+| +.+..+|..+. .+|++|++++|. +..+|..+. .+|+
T Consensus 178 ~~~~~L~L~------~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~ 244 (754)
T PRK15370 178 NNKTELRLK------ILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQ 244 (754)
T ss_pred cCceEEEeC------CCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--cccc
Confidence 346677776 555666666553 36777777 56667776554 477777777775 667776543 3677
Q ss_pred EEEecccccccCcccccCCCCCCcCCceEEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCCCC
Q 002044 658 HLMFEVDYLEYMPKGIERLTSLRTLSEFVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKK 737 (976)
Q Consensus 658 ~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~ 737 (976)
.|++++|.+..+|..+. ++|+.|++..+. ... .|. .+ ..
T Consensus 245 ~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~-LP~-----------------------------------~l--~~ 283 (754)
T PRK15370 245 EMELSINRITELPERLP--SALQSLDLFHNK-ISC-LPE-----------------------------------NL--PE 283 (754)
T ss_pred EEECcCCccCcCChhHh--CCCCEEECcCCc-cCc-ccc-----------------------------------cc--CC
Confidence 77777777777766553 345555432111 000 000 00 02
Q ss_pred CCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCCCCC
Q 002044 738 NLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMPALG 817 (976)
Q Consensus 738 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~ 817 (976)
+|+.|+++.|... .++..+ +++|+.|++++|.+..+ |..+ +++|+.|++++|.. ..+|. .
T Consensus 284 sL~~L~Ls~N~Lt-------------~LP~~l--p~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~L-t~LP~-~ 343 (754)
T PRK15370 284 ELRYLSVYDNSIR-------------TLPAHL--PSGITHLNVQSNSLTAL-PETL--PPGLKTLEAGENAL-TSLPA-S 343 (754)
T ss_pred CCcEEECCCCccc-------------cCcccc--hhhHHHHHhcCCccccC-Cccc--cccceeccccCCcc-ccCCh-h
Confidence 4555555544321 011111 23566666666666554 4432 25667777766643 23332 1
Q ss_pred CCCCcceeeccccccceEeCccccCCCcCcccccccCCCCCCCCCccCccCCccceeeecccccccccccCCCccccCCC
Q 002044 818 ILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQ 897 (976)
Q Consensus 818 ~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~ 897 (976)
..++|+.|+|++|. +..+|.. ..++|+.|.+.++ .+..+ |.. ..++
T Consensus 344 l~~sL~~L~Ls~N~-L~~LP~~---------------------------lp~~L~~LdLs~N-~Lt~L---P~~--l~~s 389 (754)
T PRK15370 344 LPPELQVLDVSKNQ-ITVLPET---------------------------LPPTITTLDVSRN-ALTNL---PEN--LPAA 389 (754)
T ss_pred hcCcccEEECCCCC-CCcCChh---------------------------hcCCcCEEECCCC-cCCCC---CHh--HHHH
Confidence 13567777777664 3333321 1245666666653 22222 111 1236
Q ss_pred cceEeeecCCCCCCCCcCCC----CCCCCCeEEEccCcc
Q 002044 898 LSSMKISYCSKLNSLPDQLL----QSTTLEELEIIRCPI 932 (976)
Q Consensus 898 L~~L~l~~c~~L~~lp~~l~----~l~~L~~L~l~~c~~ 932 (976)
|+.|++++|. +..+|..+. .++.+..|++.+||-
T Consensus 390 L~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 390 LQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred HHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 7778888765 667765433 346778888888864
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.20 E-value=3.1e-13 Score=122.99 Aligned_cols=131 Identities=25% Similarity=0.343 Sum_probs=110.5
Q ss_pred ccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecC--cccccc
Q 002044 545 VSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKL 622 (976)
Q Consensus 545 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~l 622 (976)
..+++++++.-|.++.|.+.... |. +..+++|++|++. ++.++++|.+|+.|++||.|++ +.+..+
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~vp-----pn-ia~l~nlevln~~------nnqie~lp~~issl~klr~lnvgmnrl~~l 94 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVVP-----PN-IAELKNLEVLNLS------NNQIEELPTSISSLPKLRILNVGMNRLNIL 94 (264)
T ss_pred ccccchhhhhhhhcccCceeecC-----Cc-HHHhhhhhhhhcc------cchhhhcChhhhhchhhhheecchhhhhcC
Confidence 35567888888889888754322 22 6788999999999 8889999999999999999999 788899
Q ss_pred CccccccCCccEEecCCCCC-CcccchhhcccCCCcEEEecccccccCcccccCCCCCCcCCceEE
Q 002044 623 PETCCELLNLQTLNMCGSPG-LKRLPQGIGKLINLRHLMFEVDYLEYMPKGIERLTSLRTLSEFVV 687 (976)
Q Consensus 623 p~~i~~L~~L~~L~l~~~~~-l~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~ 687 (976)
|..++.++-|++||+.+|.. -..+|..+..|+.|+-|+++.|.++.+|..++++++||.|.+..+
T Consensus 95 prgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 95 PRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred ccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC
Confidence 99999999999999998872 245898899999999999999999999999999999998865443
No 20
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.18 E-value=8.2e-09 Score=117.04 Aligned_cols=305 Identities=14% Similarity=0.090 Sum_probs=169.1
Q ss_pred cCCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-----------H
Q 002044 172 DLSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-----------S 240 (976)
Q Consensus 172 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-----------~ 240 (976)
.+..++||++++++|...+..... ......+.|+|++|+|||++++.++++.......-..+++.+ .
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 446799999999999999864322 223456789999999999999999984322211112344432 4
Q ss_pred HHHHHhCCC--CCcccHHHHHHHHHHHHc--CCceEEEEcCCCCCC----ccCcHhHHHhhcCCCCCcE--EEEEcCchh
Q 002044 241 IIEALEGFA--PNLGELNSLLLRIDAFIA--RKKFLLILDDVWTDD----YSKWEPFRRCLINGHRESR--ILVTTRKET 310 (976)
Q Consensus 241 ~~~~l~~~~--~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~----~~~~~~l~~~l~~~~~gs~--iivTtR~~~ 310 (976)
+..++.+.. ....+..+....+.+.+. +++.+||||+++.-. .+.+..+...+.. ..+++ +|.+++...
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcc
Confidence 445554311 112245666677777775 456899999996421 1222333322222 22333 566666543
Q ss_pred hhhccC-------CcceEecCCCCHHHHHHHHHHHhcCC--CCCCcchhHHHHHHHHHhhcCCCchHHHHHhhhh--c--
Q 002044 311 VARMME-------STDVIFIKELSEQECWALFKRFACFG--RSLSECEQLEEIGKKIVGKCKGLPLAAKTIGSLL--R-- 377 (976)
Q Consensus 311 v~~~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l--~-- 377 (976)
+..... ....+.+.+++.++..+++..++... .....+..++.+++......|..+.|+..+-.+. .
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 332211 13467899999999999998876321 1122334444544444444566777777664322 1
Q ss_pred cC-C--CHHHHHHHHhhhhhhhhhhhhhhhHHHHhhhcCCcHHHHHHHhhhcccCC--CceeChHHHHHH--HHHcCccc
Q 002044 378 FK-R--TREEWQSILDSEIWQLEEFEKGLLAPLLLSYNDLPTIIKQCFLYCAVFPK--DCFLERDELIKL--WMAQGYIV 450 (976)
Q Consensus 378 ~~-~--~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp~--~~~i~~~~li~~--w~a~g~i~ 450 (976)
.+ . +.++...+.+.. -.....-.+..||.+.|..+..++..-+ ...+....+... .+++.+-.
T Consensus 265 ~~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~ 334 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY 334 (394)
T ss_pred cCCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC
Confidence 11 1 344554444321 1122344678999988876665553321 123555555432 22222111
Q ss_pred ccCCchhhHHHHHHHHHHHHHhcCCcccccc--CCCCcEeEEEech
Q 002044 451 QKGNKEMEMEMIGEGYFDYLATRSFFQEFEK--DEAGIVRRCKMHD 494 (976)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~L~~r~ll~~~~~--~~~~~~~~~~mHd 494 (976)
..-+ ......|+..|.+.++|..... +..|+.+.++.+.
T Consensus 335 ~~~~-----~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~~ 375 (394)
T PRK00411 335 EPRT-----HTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLSY 375 (394)
T ss_pred CcCc-----HHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEecC
Confidence 0000 2334569999999999986532 3345555565553
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.14 E-value=1.3e-10 Score=138.07 Aligned_cols=119 Identities=20% Similarity=0.329 Sum_probs=66.4
Q ss_pred eEEEEEccCCCCCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCc
Q 002044 531 RHLMLVLGYKNSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRH 610 (976)
Q Consensus 531 r~l~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~ 610 (976)
..+.+.......+|..+ .++|+.|++++|.+.... .. + +++|+.|+++ ++.+..+|..+. .+
T Consensus 181 ~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~LtsLP-----~~-l--~~nL~~L~Ls------~N~LtsLP~~l~--~~ 242 (754)
T PRK15370 181 TELRLKILGLTTIPACI--PEQITTLILDNNELKSLP-----EN-L--QGNIKTLYAN------SNQLTSIPATLP--DT 242 (754)
T ss_pred eEEEeCCCCcCcCCccc--ccCCcEEEecCCCCCcCC-----hh-h--ccCCCEEECC------CCccccCChhhh--cc
Confidence 33444444444444433 245777777777654211 11 1 2467777777 444555665443 35
Q ss_pred cceecC--ccccccCccccccCCccEEecCCCCCCcccchhhcccCCCcEEEecccccccCccc
Q 002044 611 LRYLKL--YLVEKLPETCCELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLEYMPKG 672 (976)
Q Consensus 611 Lr~L~L--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lp~~ 672 (976)
|+.|+| +.+..+|..+. .+|++|++++|. +..+|..+. .+|++|++++|.+..+|..
T Consensus 243 L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~ 301 (754)
T PRK15370 243 IQEMELSINRITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNSIRTLPAH 301 (754)
T ss_pred ccEEECcCCccCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCccccCccc
Confidence 666666 55666665543 366777776664 666666543 4677777766666666543
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.13 E-value=4.8e-11 Score=143.83 Aligned_cols=321 Identities=24% Similarity=0.281 Sum_probs=210.8
Q ss_pred cccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccC-ccccCCCccceecCc---cccccC
Q 002044 548 FYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIP-KGIKKLRHLRYLKLY---LVEKLP 623 (976)
Q Consensus 548 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp-~~i~~L~~Lr~L~L~---~~~~lp 623 (976)
.+....|...+.++.+..... -..++.|++|-+.++.. .+..++ ..+..+++|++|||+ .+.+||
T Consensus 520 ~~~~~~rr~s~~~~~~~~~~~-------~~~~~~L~tLll~~n~~----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEHIAG-------SSENPKLRTLLLQRNSD----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred cchhheeEEEEeccchhhccC-------CCCCCccceEEEeecch----hhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 445677888887776422111 24455799999885321 144454 347889999999995 778899
Q ss_pred ccccccCCccEEecCCCCCCcccchhhcccCCCcEEEecccc-cccCcccccCCCCCCcCCceEEecCCCCCCCcccccc
Q 002044 624 ETCCELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDY-LEYMPKGIERLTSLRTLSEFVVVNGSGKYGSKACNLE 702 (976)
Q Consensus 624 ~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~ 702 (976)
++|++|.+|++|+++++. +..+|.++++|++|.||++..+. +..+|..+..|++|++|.++...... ....+.
T Consensus 589 ~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~-----~~~~l~ 662 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN-----DKLLLK 662 (889)
T ss_pred hHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc-----chhhHH
Confidence 999999999999999998 99999999999999999996544 34444444559999999876653111 244555
Q ss_pred cccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCce----EEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceE
Q 002044 703 GLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVV----LILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESL 778 (976)
Q Consensus 703 ~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~----L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 778 (976)
++..|.+|. .+.+..... .....+..+..|.+ +.+..+ ........+..+.+|+.|
T Consensus 663 el~~Le~L~-~ls~~~~s~------~~~e~l~~~~~L~~~~~~l~~~~~-------------~~~~~~~~~~~l~~L~~L 722 (889)
T KOG4658|consen 663 ELENLEHLE-NLSITISSV------LLLEDLLGMTRLRSLLQSLSIEGC-------------SKRTLISSLGSLGNLEEL 722 (889)
T ss_pred hhhcccchh-hheeecchh------HhHhhhhhhHHHHHHhHhhhhccc-------------ccceeecccccccCcceE
Confidence 555555544 444422111 00011122222221 221111 112233456778899999
Q ss_pred EEeecCCCCCCccccc-----c-cccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceEeCccccCCCcCcccccc
Q 002044 779 QITGFKGRTLMLSWIV-----S-LNKLKKLRLLFCDKCEVMPALGILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIHIQ 852 (976)
Q Consensus 779 ~L~~~~~~~~~p~~~~-----~-l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~l~ 852 (976)
.+.+|.+......|.. . ++++.++.+.+|.....+.+....|+|+.|.+..|..++.+....-....+..
T Consensus 723 ~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~---- 798 (889)
T KOG4658|consen 723 SILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKE---- 798 (889)
T ss_pred EEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhccc----
Confidence 9999988654233433 2 66888888889988888888888999999999999877665432221111110
Q ss_pred cCCCCCCCCCccCccCCcccee-eecccccccccccCCCccccCCCcceEeeecCCCCCCCCcCCCCCCCCCeEEEccC
Q 002044 853 DGSMSSSSSSSANIAFPKLKEL-KFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNSLPDQLLQSTTLEELEIIRC 930 (976)
Q Consensus 853 ~~~~~~~~~~~~~~~fp~L~~L-~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c 930 (976)
....|++++.+ .+.+++.+..+...+- .+++|+.+.+..||+++.+| .+.++.+.+|
T Consensus 799 -----------~i~~f~~~~~l~~~~~l~~l~~i~~~~l---~~~~l~~~~ve~~p~l~~~P-------~~~~~~i~~~ 856 (889)
T KOG4658|consen 799 -----------LILPFNKLEGLRMLCSLGGLPQLYWLPL---SFLKLEELIVEECPKLGKLP-------LLSTLTIVGC 856 (889)
T ss_pred -----------EEecccccccceeeecCCCCceeEeccc---CccchhheehhcCcccccCc-------cccccceecc
Confidence 02357788888 5777777776665543 56779999999999888877 3455677776
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.09 E-value=3.4e-12 Score=116.25 Aligned_cols=138 Identities=32% Similarity=0.383 Sum_probs=86.1
Q ss_pred ceeEEEEEccCCCCCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCC
Q 002044 529 KLRHLMLVLGYKNSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKL 608 (976)
Q Consensus 529 ~~r~l~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L 608 (976)
++..+.+..+.+..+|..++.+++||.|++.-|.++. +|.-|+.++.|++|||.++ +.+-..+|..+..+
T Consensus 57 nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~------lprgfgs~p~levldltyn----nl~e~~lpgnff~m 126 (264)
T KOG0617|consen 57 NLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNI------LPRGFGSFPALEVLDLTYN----NLNENSLPGNFFYM 126 (264)
T ss_pred hhhhhhcccchhhhcChhhhhchhhhheecchhhhhc------CccccCCCchhhhhhcccc----ccccccCCcchhHH
Confidence 3444555555555666666666666666665444221 2333666667777777633 22233466666666
Q ss_pred CccceecC--ccccccCccccccCCccEEecCCCCCCcccchhhcccCCCcEEEecccccccCcccccCCC
Q 002044 609 RHLRYLKL--YLVEKLPETCCELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLEYMPKGIERLT 677 (976)
Q Consensus 609 ~~Lr~L~L--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~ 677 (976)
..||-|.| ++.+-+|..+++|.+||.|.++.|. +-++|..++.++.|+.|.+.+|.+.-+|+.++++.
T Consensus 127 ~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqgnrl~vlppel~~l~ 196 (264)
T KOG0617|consen 127 TTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQGNRLTVLPPELANLD 196 (264)
T ss_pred HHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhcccceeeecChhhhhhh
Confidence 66666666 5666677777777777777777766 66677777777777777777777777776665543
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.05 E-value=8.3e-12 Score=128.77 Aligned_cols=125 Identities=21% Similarity=0.266 Sum_probs=63.8
Q ss_pred ccCceeEEEEEccCCCCCc-ccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCc-
Q 002044 526 SQEKLRHLMLVLGYKNSFP-VSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPK- 603 (976)
Q Consensus 526 ~~~~~r~l~~~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~- 603 (976)
.|.....+.+..+.+..+| ..|..+++||.|++++|.++... ++.|++++.|-.|-+.+ ++.|..+|+
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~-----p~AF~GL~~l~~Lvlyg-----~NkI~~l~k~ 134 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIA-----PDAFKGLASLLSLVLYG-----NNKITDLPKG 134 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcC-----hHhhhhhHhhhHHHhhc-----CCchhhhhhh
Confidence 3444555556656555554 33445666666666666543322 22255555555555443 344555553
Q ss_pred cccCCCccceecC--ccccccC-ccccccCCccEEecCCCCCCcccch-hhcccCCCcEEEe
Q 002044 604 GIKKLRHLRYLKL--YLVEKLP-ETCCELLNLQTLNMCGSPGLKRLPQ-GIGKLINLRHLMF 661 (976)
Q Consensus 604 ~i~~L~~Lr~L~L--~~~~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~l 661 (976)
.+++|..|+-|.+ +.+..++ +.+..|++|..|.+..|. ++.++. .+..+..++++.+
T Consensus 135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhl 195 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHL 195 (498)
T ss_pred HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhh
Confidence 3455555555555 3444443 244455555555555554 455544 3445555555544
No 25
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.04 E-value=9.7e-10 Score=115.10 Aligned_cols=184 Identities=23% Similarity=0.171 Sum_probs=95.8
Q ss_pred cccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH----------HHH---
Q 002044 176 VRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE----------SII--- 242 (976)
Q Consensus 176 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~----------~~~--- 242 (976)
|+||++++++|.+++... ..+.+.|+|+.|+|||+|++.+.+... ...+ .++|+.. .+.
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~~-~~~~-~~~y~~~~~~~~~~~~~~~~~~~ 72 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINELK-EKGY-KVVYIDFLEESNESSLRSFIEET 72 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHhh-hcCC-cEEEEecccchhhhHHHHHHHHH
Confidence 799999999999998742 356889999999999999999988321 1122 2233221 110
Q ss_pred -------HHHhCCCC----------CcccHHHHHHHHHHHHc--CCceEEEEcCCCCCC------ccCcHhHHHhhcC--
Q 002044 243 -------EALEGFAP----------NLGELNSLLLRIDAFIA--RKKFLLILDDVWTDD------YSKWEPFRRCLIN-- 295 (976)
Q Consensus 243 -------~~l~~~~~----------~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~~~l~~~l~~-- 295 (976)
..+..... ...........+.+.+. +++++||+||+..-. ..-...+...+..
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (234)
T PF01637_consen 73 SLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL 152 (234)
T ss_dssp HHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc
Confidence 00111000 11223334444545554 346999999994322 0111223333332
Q ss_pred -CCCCcEEEEEcCchhhhhc--------cCCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCc
Q 002044 296 -GHRESRILVTTRKETVARM--------MESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLP 366 (976)
Q Consensus 296 -~~~gs~iivTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 366 (976)
..+.+.|+++|. ..+... .+....+.+++|+.+++++++...+-.. ... +.-.+..++|...+||+|
T Consensus 153 ~~~~~~~v~~~S~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 153 SQQNVSIVITGSS-DSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp --TTEEEEEEESS-HHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-H
T ss_pred ccCCceEEEECCc-hHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCCH
Confidence 333444444444 332221 2334469999999999999999865322 111 123445578999999999
Q ss_pred hHHHH
Q 002044 367 LAAKT 371 (976)
Q Consensus 367 Lai~~ 371 (976)
..|..
T Consensus 229 ~~l~~ 233 (234)
T PF01637_consen 229 RYLQE 233 (234)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98764
No 26
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.02 E-value=1e-07 Score=106.97 Aligned_cols=289 Identities=12% Similarity=0.066 Sum_probs=155.9
Q ss_pred CCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchh-cc----cccceeehH--------
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVI-SN----FEKRMWNCE-------- 239 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~----f~~~~wv~~-------- 239 (976)
+..++||++++++|...+..... ......+.|+|++|+|||++++.+++...-. .. | ..+|+.+
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~-~~v~in~~~~~~~~~ 90 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRV-VTVYVNCQILDTLYQ 90 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCce-EEEEEECCCCCCHHH
Confidence 35799999999999999874322 2234578999999999999999999742110 11 1 1334432
Q ss_pred ---HHHHHHh--CCC-C-CcccHHHHHHHHHHHHc--CCceEEEEcCCCCCC---ccCcHhHHHhh-cCCC--CCcEEEE
Q 002044 240 ---SIIEALE--GFA-P-NLGELNSLLLRIDAFIA--RKKFLLILDDVWTDD---YSKWEPFRRCL-INGH--RESRILV 304 (976)
Q Consensus 240 ---~~~~~l~--~~~-~-~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---~~~~~~l~~~l-~~~~--~gs~iiv 304 (976)
.+.+++. +.. + ...+..+....+.+.+. +++++||||+++.-. ...+..+.... .... ....+|.
T Consensus 91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~ 170 (365)
T TIGR02928 91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIG 170 (365)
T ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEE
Confidence 4455553 111 1 11234455556666664 567899999995431 11112222211 0111 2234455
Q ss_pred EcCchhhhhcc-----CC--cceEecCCCCHHHHHHHHHHHhcC-CCCCCcchhHHHHHHHHHhhcCCCch-HHHHHhhh
Q 002044 305 TTRKETVARMM-----ES--TDVIFIKELSEQECWALFKRFACF-GRSLSECEQLEEIGKKIVGKCKGLPL-AAKTIGSL 375 (976)
Q Consensus 305 TtR~~~v~~~~-----~~--~~~~~l~~L~~~~~~~Lf~~~~~~-~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~~ 375 (976)
+|+.......+ .. ...+.+++.+.++..+++..++-. .......++..+...+++....|.|- |+..+-..
T Consensus 171 i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a 250 (365)
T TIGR02928 171 ISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVA 250 (365)
T ss_pred EECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 55433221111 11 246889999999999999987631 11112233444455567777778874 33332211
Q ss_pred h--c--cC---CCHHHHHHHHhhhhhhhhhhhhhhhHHHHhhhcCCcHHHHHHHhhhcccC--CCceeChHHHHHHHH--
Q 002044 376 L--R--FK---RTREEWQSILDSEIWQLEEFEKGLLAPLLLSYNDLPTIIKQCFLYCAVFP--KDCFLERDELIKLWM-- 444 (976)
Q Consensus 376 l--~--~~---~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp--~~~~i~~~~li~~w~-- 444 (976)
. . .+ -+.+....+.+.. -.....-+...||.+.+..+..++..- .+..+...++...+.
T Consensus 251 ~~~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~ 320 (365)
T TIGR02928 251 GEIAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEV 320 (365)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 1 1 11 1333333333221 112233466789988886666554221 233456666655332
Q ss_pred HcCc-ccccCCchhhHHHHHHHHHHHHHhcCCccccc
Q 002044 445 AQGY-IVQKGNKEMEMEMIGEGYFDYLATRSFFQEFE 480 (976)
Q Consensus 445 a~g~-i~~~~~~~~~~~~~~~~~~~~L~~r~ll~~~~ 480 (976)
++.+ +.+.+ +.....++..|...|++....
T Consensus 321 ~~~~~~~~~~------~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 321 CEDIGVDPLT------QRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHhcCCCCCc------HHHHHHHHHHHHhcCCeEEEE
Confidence 2211 11111 455677899999999998653
No 27
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.00 E-value=8e-09 Score=113.20 Aligned_cols=264 Identities=19% Similarity=0.141 Sum_probs=140.4
Q ss_pred CCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCCCc
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAPNL 252 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~~~ 252 (976)
-.+|+|+++.++.+..++...... ....+.+.|+|++|+||||+|+.+++. ....+. ++.... .
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~~---~~~~~~----------~ 87 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKR-GEALDHVLLYGPPGLGKTTLANIIANE--MGVNIR---ITSGPA----------L 87 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhc-CCCCCcEEEECCCCccHHHHHHHHHHH--hCCCeE---EEeccc----------c
Confidence 357999999999998887642211 234567889999999999999999984 322221 111100 0
Q ss_pred ccHHHHHHHHHHHHcCCceEEEEcCCCCCCccCcHhHHHhhcC-------------------CCCCcEEEEEcCchhhhh
Q 002044 253 GELNSLLLRIDAFIARKKFLLILDDVWTDDYSKWEPFRRCLIN-------------------GHRESRILVTTRKETVAR 313 (976)
Q Consensus 253 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~-------------------~~~gs~iivTtR~~~v~~ 313 (976)
.....+. .+...+ ++.-+|++|++..-.....+.+...+.. -.+.+-|..|++...+..
T Consensus 88 ~~~~~l~-~~l~~l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~ 165 (328)
T PRK00080 88 EKPGDLA-AILTNL-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTS 165 (328)
T ss_pred cChHHHH-HHHHhc-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCH
Confidence 0000111 111111 2344666666632111111111111110 012344556666544433
Q ss_pred ccC--CcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHHhhhhccCCCHHHHHHHHhh
Q 002044 314 MME--STDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTIGSLLRFKRTREEWQSILDS 391 (976)
Q Consensus 314 ~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~l~~ 391 (976)
... ....+.+++++.++..+++.+.+...+... -.+....|++.|+|.|-.+..+...+ ..|......
T Consensus 166 ~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~----~~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~ 235 (328)
T PRK00080 166 PLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEI----DEEGALEIARRSRGTPRIANRLLRRV------RDFAQVKGD 235 (328)
T ss_pred HHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCC
Confidence 221 135789999999999999998874433222 23456779999999995444333322 223222111
Q ss_pred hhhhhhhhhhhhhHHHHhhhcCCcHHHHHHHh-hhcccCCCceeChHHHHHHHHHcCcccccCCchhhHHHHHHHHHH-H
Q 002044 392 EIWQLEEFEKGLLAPLLLSYNDLPTIIKQCFL-YCAVFPKDCFLERDELIKLWMAQGYIVQKGNKEMEMEMIGEGYFD-Y 469 (976)
Q Consensus 392 ~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~-~ 469 (976)
. .-....-......+...|..|++..+..+. ....|+.+ .+..+.+-..+ ... .+.+++.++ .
T Consensus 236 ~-~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g~~-------~~~~~~~~e~~ 300 (328)
T PRK00080 236 G-VITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------GEE-------RDTIEDVYEPY 300 (328)
T ss_pred C-CCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------CCC-------cchHHHHhhHH
Confidence 0 001111123445566778889887777664 66667655 45544432111 111 233444555 7
Q ss_pred HHhcCCcccc
Q 002044 470 LATRSFFQEF 479 (976)
Q Consensus 470 L~~r~ll~~~ 479 (976)
|++.+|++..
T Consensus 301 Li~~~li~~~ 310 (328)
T PRK00080 301 LIQQGFIQRT 310 (328)
T ss_pred HHHcCCcccC
Confidence 8999999643
No 28
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.00 E-value=1.1e-08 Score=111.51 Aligned_cols=266 Identities=16% Similarity=0.141 Sum_probs=135.9
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeeh----H-HHHHHHhCC
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNC----E-SIIEALEGF 248 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~----~-~~~~~l~~~ 248 (976)
.+|+|++..++.+..++...... ......+.++|++|+|||+||+.+++. ....+.. .... . .+...+...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~~~-~~~~~~~~~~~l~~~l~~~ 79 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMR-QEALDHLLLYGPPGLGKTTLAHIIANE--MGVNLKI-TSGPALEKPGDLAAILTNL 79 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCEEE-eccchhcCchhHHHHHHhc
Confidence 47999999999999888643221 123456889999999999999999984 3222211 0000 0 111111100
Q ss_pred CC-C---cccH----HHHHHHHHHHHcCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCchhhhhcc-C-Cc
Q 002044 249 AP-N---LGEL----NSLLLRIDAFIARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKETVARMM-E-ST 318 (976)
Q Consensus 249 ~~-~---~~~~----~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~-~-~~ 318 (976)
.. . .++. ......+...+.+.+..+|+|+..+. ..|. .. ..+.+-|..||+...+.... . ..
T Consensus 80 ~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~--~~~~---~~---~~~~~li~~t~~~~~l~~~l~sR~~ 151 (305)
T TIGR00635 80 EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSA--RSVR---LD---LPPFTLVGATTRAGMLTSPLRDRFG 151 (305)
T ss_pred ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccc--ccee---ec---CCCeEEEEecCCccccCHHHHhhcc
Confidence 00 0 0000 01112233333333333444433211 1110 01 11244556667765443322 1 13
Q ss_pred ceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHHhhhhccCCCHHHHHHH--Hhhhhhhh
Q 002044 319 DVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTIGSLLRFKRTREEWQSI--LDSEIWQL 396 (976)
Q Consensus 319 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~--l~~~~~~~ 396 (976)
..+.+++++.++..+++.+.+........ .+....|++.|+|.|-.+..++..+ |... .+... ..
T Consensus 152 ~~~~l~~l~~~e~~~il~~~~~~~~~~~~----~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~-it 218 (305)
T TIGR00635 152 IILRLEFYTVEELAEIVSRSAGLLNVEIE----PEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKI-IN 218 (305)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHhCCCcC----HHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCC-cC
Confidence 56889999999999999987743222122 3455679999999996654444322 2111 11100 00
Q ss_pred hhhhhhhhHHHHhhhcCCcHHHHHHHh-hhcccCCCceeChHHHHHHHHHcCcccccCCchhhHHHHHHHHHH-HHHhcC
Q 002044 397 EEFEKGLLAPLLLSYNDLPTIIKQCFL-YCAVFPKDCFLERDELIKLWMAQGYIVQKGNKEMEMEMIGEGYFD-YLATRS 474 (976)
Q Consensus 397 ~~~~~~~~~~l~~sy~~L~~~~k~cfl-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~-~L~~r~ 474 (976)
...-......+...|..++++.+..+. ....++.+ .+..+.+ |.- .... ...++..++ .|++++
T Consensus 219 ~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~i-----a~~-lg~~-------~~~~~~~~e~~Li~~~ 284 (305)
T TIGR00635 219 RDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTL-----AAA-LGED-------ADTIEDVYEPYLLQIG 284 (305)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHH-----HHH-hCCC-------cchHHHhhhHHHHHcC
Confidence 111122333356678889888777665 44556543 3443322 211 1111 234555567 699999
Q ss_pred Cccc
Q 002044 475 FFQE 478 (976)
Q Consensus 475 ll~~ 478 (976)
|+..
T Consensus 285 li~~ 288 (305)
T TIGR00635 285 FLQR 288 (305)
T ss_pred Cccc
Confidence 9964
No 29
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.97 E-value=1.8e-08 Score=107.75 Aligned_cols=175 Identities=17% Similarity=0.136 Sum_probs=102.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchhcccccceeeh-----H-HHHHHHh---CCCCCcccHHHHHHHHHHH-----
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNC-----E-SIIEALE---GFAPNLGELNSLLLRIDAF----- 265 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-----~-~~~~~l~---~~~~~~~~~~~~~~~l~~~----- 265 (976)
+..++.|+|++|+||||+++.+++.... ..+ ..+|+. . +++..+. +......+.......+.+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~ 119 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQF 119 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3458899999999999999999985321 111 122221 1 2222222 2211222222333333332
Q ss_pred HcCCceEEEEcCCCCCCccCcHhHHHhhcC---CCCCcEEEEEcCchhhhhc-------c--CCcceEecCCCCHHHHHH
Q 002044 266 IARKKFLLILDDVWTDDYSKWEPFRRCLIN---GHRESRILVTTRKETVARM-------M--ESTDVIFIKELSEQECWA 333 (976)
Q Consensus 266 l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~---~~~gs~iivTtR~~~v~~~-------~--~~~~~~~l~~L~~~~~~~ 333 (976)
..+++.++|+||+|.-+...++.+...... ......|++|....-.... . .....+.+++++.+|..+
T Consensus 120 ~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~ 199 (269)
T TIGR03015 120 AAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETRE 199 (269)
T ss_pred hCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHH
Confidence 257889999999987655556665532221 1223355666654321100 1 113468899999999999
Q ss_pred HHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHHhhhh
Q 002044 334 LFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTIGSLL 376 (976)
Q Consensus 334 Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 376 (976)
++...+..........-..+..+.|++.++|.|..|..++..+
T Consensus 200 ~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 200 YIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9987763322111112235677889999999999999888765
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.94 E-value=6.1e-11 Score=122.52 Aligned_cols=270 Identities=20% Similarity=0.202 Sum_probs=164.4
Q ss_pred CceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCccc-CccccCCCccceecC---ccccccCc-c
Q 002044 551 RKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEI-PKGIKKLRHLRYLKL---YLVEKLPE-T 625 (976)
Q Consensus 551 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~l-p~~i~~L~~Lr~L~L---~~~~~lp~-~ 625 (976)
+....+.+..|.+. .+++..|+.+++||.|||+ .+.|..+ |..+..|..|-.|-+ +.|..+|+ .
T Consensus 67 ~~tveirLdqN~I~-----~iP~~aF~~l~~LRrLdLS------~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 67 PETVEIRLDQNQIS-----SIPPGAFKTLHRLRRLDLS------KNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred CcceEEEeccCCcc-----cCChhhccchhhhceeccc------ccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 45677888888753 3356669999999999999 7777776 577888888777766 67999996 6
Q ss_pred ccccCCccEEecCCCCCCcccc-hhhcccCCCcEEEecccccccCcc-cccCCCCCCcCCceEEecCCCCCCCccccccc
Q 002044 626 CCELLNLQTLNMCGSPGLKRLP-QGIGKLINLRHLMFEVDYLEYMPK-GIERLTSLRTLSEFVVVNGSGKYGSKACNLEG 703 (976)
Q Consensus 626 i~~L~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~ 703 (976)
+++|..||-|.+..|. +.-++ ..+..|++|+.|.+-.|.+..++. .+..+..++++.+..+. .. ..++++.
T Consensus 136 F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np-~i-----cdCnL~w 208 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP-FI-----CDCNLPW 208 (498)
T ss_pred hhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc-cc-----cccccch
Confidence 8899999999998887 55544 558899999999998888888887 57788888887643332 11 1222222
Q ss_pred ccccccCCCceEEcCcCCCCChh--hHHhccCCCCCC---CceE--EEEecCCCCCCCCccchhhHHHHhhcCCCCCCCc
Q 002044 704 LRYLNHLRGSLKIRGLGNVTDID--EAKSAHLDKKKN---LVVL--ILRFNKEAPVGMKDENEANHEAVCEALQPPPNLE 776 (976)
Q Consensus 704 L~~L~~L~~~l~i~~l~~~~~~~--~~~~~~l~~~~~---L~~L--~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 776 (976)
+..-.... .....+..-+.... ..........+. ++.+ .+.... .++. ..--..+..+++|+
T Consensus 209 la~~~a~~-~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d-~~d~---------~cP~~cf~~L~~L~ 277 (498)
T KOG4237|consen 209 LADDLAMN-PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSED-FPDS---------ICPAKCFKKLPNLR 277 (498)
T ss_pred hhhHHhhc-hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhcccc-CcCC---------cChHHHHhhcccce
Confidence 22211000 01111110000000 000000010111 1111 000000 0000 00011256678999
Q ss_pred eEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCC--CCCCCCCcceeeccccccceEe-CccccCCCcCccccc
Q 002044 777 SLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMP--ALGILPSLEVLKIRFMKSVKRV-GNEFLGTEISDHIHI 851 (976)
Q Consensus 777 ~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~--~l~~L~~L~~L~L~~~~~l~~~-~~~~~~~~~~~~l~l 851 (976)
+|++++|++..+.+.|+.....|+.|.|..|+ ++.+. .+..+..|+.|+|+++. ++.+ +..|.....+..+.+
T Consensus 278 ~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~-it~~~~~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 278 KLNLSNNKITRIEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQ-ITTVAPGAFQTLFSLSTLNL 353 (498)
T ss_pred EeccCCCccchhhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCe-eEEEecccccccceeeeeeh
Confidence 99999999888878889889999999998885 33332 36678889999999887 4444 333333333444443
No 31
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.83 E-value=2.5e-07 Score=106.13 Aligned_cols=284 Identities=21% Similarity=0.227 Sum_probs=173.1
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH------------HH
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE------------SI 241 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~------------~~ 241 (976)
...+-|.. +.+.|.. ..+.|++.|..++|.|||||+-+... +. ..-..+.|.+. -+
T Consensus 19 ~~~v~R~r----L~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~--~~-~~~~~v~Wlslde~dndp~rF~~yL 86 (894)
T COG2909 19 DNYVVRPR----LLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE--LA-ADGAAVAWLSLDESDNDPARFLSYL 86 (894)
T ss_pred ccccccHH----HHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH--hc-CcccceeEeecCCccCCHHHHHHHH
Confidence 34455544 4555543 33789999999999999999999874 11 22245888875 22
Q ss_pred HHHHhCCCCC-------------cccHHHHHHHHHHHHc--CCceEEEEcCCCCCCccCcHh-HHHhhcCCCCCcEEEEE
Q 002044 242 IEALEGFAPN-------------LGELNSLLLRIDAFIA--RKKFLLILDDVWTDDYSKWEP-FRRCLINGHRESRILVT 305 (976)
Q Consensus 242 ~~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~-l~~~l~~~~~gs~iivT 305 (976)
+..+....++ ..+...+...+...+. .++..+||||-.-........ +...+.....+-.+|||
T Consensus 87 i~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~ 166 (894)
T COG2909 87 IAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVT 166 (894)
T ss_pred HHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEE
Confidence 3333321111 1233344455555444 468999999985432223333 44444455677899999
Q ss_pred cCchhhh---hccCCcceEecC----CCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHHhhhhcc
Q 002044 306 TRKETVA---RMMESTDVIFIK----ELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTIGSLLRF 378 (976)
Q Consensus 306 tR~~~v~---~~~~~~~~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~ 378 (976)
||...-. ..--.....++. .|+.+|+-++|..... . +-.+.-++.+.+..+|-+-|+..++-.++.
T Consensus 167 SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~---l----~Ld~~~~~~L~~~teGW~~al~L~aLa~~~ 239 (894)
T COG2909 167 SRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS---L----PLDAADLKALYDRTEGWAAALQLIALALRN 239 (894)
T ss_pred eccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC---C----CCChHHHHHHHhhcccHHHHHHHHHHHccC
Confidence 9987533 221112334443 5899999999987541 1 112444566999999999999999988874
Q ss_pred CCCHHHHHHHHhhhhhhhhhhhhhhhHHH-HhhhcCCcHHHHHHHhhhcccCCCceeChHHHHHHHHHcCcccccCCchh
Q 002044 379 KRTREEWQSILDSEIWQLEEFEKGLLAPL-LLSYNDLPTIIKQCFLYCAVFPKDCFLERDELIKLWMAQGYIVQKGNKEM 457 (976)
Q Consensus 379 ~~~~~~w~~~l~~~~~~~~~~~~~~~~~l-~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~ 457 (976)
+.+.+.-...+.. ..+.+..-| .--++.||+++|..++-||+++.- . ..|+.....
T Consensus 240 ~~~~~q~~~~LsG-------~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f---~-~eL~~~Ltg------------ 296 (894)
T COG2909 240 NTSAEQSLRGLSG-------AASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF---N-DELCNALTG------------ 296 (894)
T ss_pred CCcHHHHhhhccc-------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh---h-HHHHHHHhc------------
Confidence 4444433332221 111122222 235789999999999999988652 1 223222111
Q ss_pred hHHHHHHHHHHHHHhcCCccccccCCCCcEeEEEechhHHHHHHHhh
Q 002044 458 EMEMIGEGYFDYLATRSFFQEFEKDEAGIVRRCKMHDIVHDFAQFLT 504 (976)
Q Consensus 458 ~~~~~~~~~~~~L~~r~ll~~~~~~~~~~~~~~~mHdlv~~l~~~~~ 504 (976)
++-|...+++|.+++++-..-.+. + .+|+.|.++.+|.+.-.
T Consensus 297 --~~ng~amLe~L~~~gLFl~~Ldd~-~--~WfryH~LFaeFL~~r~ 338 (894)
T COG2909 297 --EENGQAMLEELERRGLFLQRLDDE-G--QWFRYHHLFAEFLRQRL 338 (894)
T ss_pred --CCcHHHHHHHHHhCCCceeeecCC-C--ceeehhHHHHHHHHhhh
Confidence 344667799999999875432222 2 46899999999976543
No 32
>PF05729 NACHT: NACHT domain
Probab=98.80 E-value=3e-08 Score=97.48 Aligned_cols=136 Identities=15% Similarity=0.208 Sum_probs=80.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcccchhcc----cccceeehHH----------HHHHHhCCCCCcccHHHHHHHHHHH-H
Q 002044 202 QIISLVGMGGIGKTTLAQFAYNDEDVISN----FEKRMWNCES----------IIEALEGFAPNLGELNSLLLRIDAF-I 266 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~----------~~~~l~~~~~~~~~~~~~~~~l~~~-l 266 (976)
|++.|+|.+|+||||+++.++.+...... +...+|.... +.+.+........ ......+... -
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~~~~~~~~~ 78 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI--APIEELLQELLE 78 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch--hhhHHHHHHHHH
Confidence 58999999999999999999874222221 3344555441 1111211111111 1111112222 2
Q ss_pred cCCceEEEEcCCCCCCc--c-----CcHhHH-HhhcC-CCCCcEEEEEcCchhh---hhccCCcceEecCCCCHHHHHHH
Q 002044 267 ARKKFLLILDDVWTDDY--S-----KWEPFR-RCLIN-GHRESRILVTTRKETV---ARMMESTDVIFIKELSEQECWAL 334 (976)
Q Consensus 267 ~~k~~LlVlDdv~~~~~--~-----~~~~l~-~~l~~-~~~gs~iivTtR~~~v---~~~~~~~~~~~l~~L~~~~~~~L 334 (976)
..++++||+|++.+-.. . .+..+. ..++. ..++.++|||+|.... .........+.+.+|++++..++
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 57899999999954221 1 122222 33333 2568999999998765 33344456899999999999999
Q ss_pred HHHHh
Q 002044 335 FKRFA 339 (976)
Q Consensus 335 f~~~~ 339 (976)
+.+..
T Consensus 159 ~~~~f 163 (166)
T PF05729_consen 159 LRKYF 163 (166)
T ss_pred HHHHh
Confidence 97754
No 33
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.78 E-value=2.9e-08 Score=104.24 Aligned_cols=171 Identities=18% Similarity=0.195 Sum_probs=106.7
Q ss_pred ccCCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCC
Q 002044 171 IDLSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAP 250 (976)
Q Consensus 171 ~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~ 250 (976)
+...+++|....+.++++ .+.+.-..+||++|+||||||+.+.. .....|... .....
T Consensus 27 vGQ~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~~~-----------sAv~~ 84 (436)
T COG2256 27 VGQEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAFEAL-----------SAVTS 84 (436)
T ss_pred cChHhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHH--hhCCceEEe-----------ccccc
Confidence 344556666666665554 45677888999999999999999998 455555421 11222
Q ss_pred CcccHHHHHHHHHH-HHcCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCchhhh-----hccCCcceEecC
Q 002044 251 NLGELNSLLLRIDA-FIARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKETVA-----RMMESTDVIFIK 324 (976)
Q Consensus 251 ~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~-----~~~~~~~~~~l~ 324 (976)
...++....+.-++ ...+++.+|++|.|..-+..+-+.+ ||.-..|.-|+|.+..++.. .......++.++
T Consensus 85 gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk 161 (436)
T COG2256 85 GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELK 161 (436)
T ss_pred cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeee
Confidence 33444444544433 3458899999999976554443433 55556777788766554322 112446899999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCc--ch-hHHHHHHHHHhhcCCCc
Q 002044 325 ELSEQECWALFKRFACFGRSLSE--CE-QLEEIGKKIVGKCKGLP 366 (976)
Q Consensus 325 ~L~~~~~~~Lf~~~~~~~~~~~~--~~-~~~~~~~~i~~~c~GlP 366 (976)
+|+.++-.+++.+.+......-. .. --++.-.-++..++|--
T Consensus 162 ~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 162 PLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred cCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 99999999999884322111111 01 11334555788888844
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.75 E-value=1.5e-09 Score=119.69 Aligned_cols=242 Identities=24% Similarity=0.169 Sum_probs=137.3
Q ss_pred ccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCccccc-CCCCcccCccccCCCccceecCc--ccc-cc
Q 002044 547 IFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLI-GSGTNEIPKGIKKLRHLRYLKLY--LVE-KL 622 (976)
Q Consensus 547 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~-~~~~~~lp~~i~~L~~Lr~L~L~--~~~-~l 622 (976)
+..+..|+.|.+.++.+....... +...+...++|+.|+++++..-. ......++..+..+.+|++|+++ .+. ..
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~-i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKA-LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHH-HHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 345666888888888765543333 34446777888888888542100 11122344556667788888883 222 23
Q ss_pred CccccccCC---ccEEecCCCCCCc-----ccchhhccc-CCCcEEEecccccc-----cCcccccCCCCCCcCCceEEe
Q 002044 623 PETCCELLN---LQTLNMCGSPGLK-----RLPQGIGKL-INLRHLMFEVDYLE-----YMPKGIERLTSLRTLSEFVVV 688 (976)
Q Consensus 623 p~~i~~L~~---L~~L~l~~~~~l~-----~lp~~i~~l-~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~~~~~~ 688 (976)
+..+..+.+ |++|++++|. +. .++..+..+ ++|+.|+++++.+. .++..+..+++|++|++..+.
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 444444444 8888888776 43 223345556 77788888666655 223334444555555422111
Q ss_pred cCCCCCCCcccccccccccccCCCceEEcCcCCCCC-hhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhHHHHhh
Q 002044 689 NGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTD-IDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHEAVCE 767 (976)
Q Consensus 689 ~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 767 (976)
+.. ........+....+|+.|+++.+... ......+..
T Consensus 177 ---------------------------------l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~--------~~~~~~l~~ 215 (319)
T cd00116 177 ---------------------------------IGDAGIRALAEGLKANCNLEVLDLNNNGLT--------DEGASALAE 215 (319)
T ss_pred ---------------------------------CchHHHHHHHHHHHhCCCCCEEeccCCccC--------hHHHHHHHH
Confidence 010 00111122334468888888876533 122334455
Q ss_pred cCCCCCCCceEEEeecCCCCCCccccc-----ccccccEEEEeCCCCCC----CC-CCCCCCCCcceeeccccc
Q 002044 768 ALQPPPNLESLQITGFKGRTLMLSWIV-----SLNKLKKLRLLFCDKCE----VM-PALGILPSLEVLKIRFMK 831 (976)
Q Consensus 768 ~l~~~~~L~~L~L~~~~~~~~~p~~~~-----~l~~L~~L~L~~~~~~~----~l-~~l~~L~~L~~L~L~~~~ 831 (976)
.+..+++|+.|++++|......+..+. ..+.|+.|++++|.... .+ ..+..+++|++|++++|.
T Consensus 216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 566678899999998876542122222 23789999998886431 11 224456888999998876
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.73 E-value=2.5e-09 Score=117.81 Aligned_cols=256 Identities=20% Similarity=0.124 Sum_probs=155.4
Q ss_pred CceeEEEEEccCCC-----CCcccccccCceeEEEecCcccch-hhhHHHHHHHHhcCCCcceEEecCcccccCCCCc-c
Q 002044 528 EKLRHLMLVLGYKN-----SFPVSIFYARKLRSLMLSYNTLNQ-KASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTN-E 600 (976)
Q Consensus 528 ~~~r~l~~~~~~~~-----~~~~~~~~~~~Lr~L~l~~~~~~~-~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~-~ 600 (976)
..++.+.+..+... .++..+...+.++.|.++++.+.. ......+...+..+++|+.|++++|. +. .
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~------~~~~ 96 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA------LGPD 96 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC------CChh
Confidence 34777888777653 234455667789999999887652 11223345557789999999999543 32 2
Q ss_pred cCccccCCC---ccceecCcc--cc-----ccCcccccc-CCccEEecCCCCCCc-----ccchhhcccCCCcEEEeccc
Q 002044 601 IPKGIKKLR---HLRYLKLYL--VE-----KLPETCCEL-LNLQTLNMCGSPGLK-----RLPQGIGKLINLRHLMFEVD 664 (976)
Q Consensus 601 lp~~i~~L~---~Lr~L~L~~--~~-----~lp~~i~~L-~~L~~L~l~~~~~l~-----~lp~~i~~l~~L~~L~l~~~ 664 (976)
.+..+..+. +|++|+++. +. .+...+..+ ++|+.|++++|. +. .++..+..+++|++|+++.+
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n 175 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANN 175 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCC
Confidence 334444444 499999933 32 233456677 899999999998 54 34556778889999999777
Q ss_pred cccc-----CcccccCCCCCCcCCceEEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCCCCCC
Q 002044 665 YLEY-----MPKGIERLTSLRTLSEFVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNL 739 (976)
Q Consensus 665 ~l~~-----lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L 739 (976)
.+.. ++..+..+++|+.|++..+. ..+ .........+..+++|
T Consensus 176 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~-------------------------------~~~~~l~~~~~~~~~L 223 (319)
T cd00116 176 GIGDAGIRALAEGLKANCNLEVLDLNNNG-LTD-------------------------------EGASALAETLASLKSL 223 (319)
T ss_pred CCchHHHHHHHHHHHhCCCCCEEeccCCc-cCh-------------------------------HHHHHHHHHhcccCCC
Confidence 7652 33334455566666533221 000 0011122334556788
Q ss_pred ceEEEEecCCCCCCCCccchhhHHHHhhcC-CCCCCCceEEEeecCCCCC----CcccccccccccEEEEeCCCCCCC--
Q 002044 740 VVLILRFNKEAPVGMKDENEANHEAVCEAL-QPPPNLESLQITGFKGRTL----MLSWIVSLNKLKKLRLLFCDKCEV-- 812 (976)
Q Consensus 740 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~L~~~~~~~~----~p~~~~~l~~L~~L~L~~~~~~~~-- 812 (976)
+.|+++.+... ......+...+ .+.+.|++|++.+|.+... +...+..+++|++|++++|.....
T Consensus 224 ~~L~ls~n~l~--------~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~ 295 (319)
T cd00116 224 EVLNLGDNNLT--------DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGA 295 (319)
T ss_pred CEEecCCCcCc--------hHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHH
Confidence 88888876533 11122233322 2457899999999876521 122333567899999998864432
Q ss_pred --CC-CCCCC-CCcceeecccc
Q 002044 813 --MP-ALGIL-PSLEVLKIRFM 830 (976)
Q Consensus 813 --l~-~l~~L-~~L~~L~L~~~ 830 (976)
+. .+... +.|+.|++.++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 296 QLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHHHHhhcCCchhhcccCCC
Confidence 11 23333 67777777654
No 36
>PRK06893 DNA replication initiation factor; Validated
Probab=98.70 E-value=1.1e-07 Score=98.15 Aligned_cols=152 Identities=13% Similarity=0.096 Sum_probs=92.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCCC
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDDVWT 280 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 280 (976)
.+.+.|+|.+|+|||+|++.+++. .......+.|+...-... ....+.+.+. +.-+||+||+|.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~~~-------------~~~~~~~~~~-~~dlLilDDi~~ 102 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKSQY-------------FSPAVLENLE-QQDLVCLDDLQA 102 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHhhh-------------hhHHHHhhcc-cCCEEEEeChhh
Confidence 357899999999999999999984 333344556665521110 0111222222 335899999986
Q ss_pred CC-ccCcHh-HHHhhcCC-CCCcEEEE-EcCc---------hhhhhccCCcceEecCCCCHHHHHHHHHHHhcCCCCCCc
Q 002044 281 DD-YSKWEP-FRRCLING-HRESRILV-TTRK---------ETVARMMESTDVIFIKELSEQECWALFKRFACFGRSLSE 347 (976)
Q Consensus 281 ~~-~~~~~~-l~~~l~~~-~~gs~iiv-TtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 347 (976)
.. ...|+. +...+... ..|..+|| |++. ..+...+....+++++++++++.++++++.++...-.-+
T Consensus 103 ~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~ 182 (229)
T PRK06893 103 VIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELS 182 (229)
T ss_pred hcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 32 234553 33333321 23555654 4543 345555555678999999999999999988864332222
Q ss_pred chhHHHHHHHHHhhcCCCchHHHHH
Q 002044 348 CEQLEEIGKKIVGKCKGLPLAAKTI 372 (976)
Q Consensus 348 ~~~~~~~~~~i~~~c~GlPLai~~~ 372 (976)
++..+-|++++.|..-++..+
T Consensus 183 ----~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 183 ----DEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred ----HHHHHHHHHhccCCHHHHHHH
Confidence 444555888887766554433
No 37
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.67 E-value=7e-07 Score=108.71 Aligned_cols=302 Identities=17% Similarity=0.155 Sum_probs=170.9
Q ss_pred ccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcc--------cc-------cceeehH
Q 002044 175 EVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISN--------FE-------KRMWNCE 239 (976)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--------f~-------~~~wv~~ 239 (976)
.++||+.+++.|...+..... ....++.+.|..|||||+|+++|.+ .+.+. |+ ...||..
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~ 75 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQA 75 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHH
Confidence 378999999999999876553 4567999999999999999999987 33222 22 1122211
Q ss_pred --HHHHHH-------------------hCC--------------CC---Cc---c--cHH-----HHHHHHHHHHc-CCc
Q 002044 240 --SIIEAL-------------------EGF--------------AP---NL---G--ELN-----SLLLRIDAFIA-RKK 270 (976)
Q Consensus 240 --~~~~~l-------------------~~~--------------~~---~~---~--~~~-----~~~~~l~~~l~-~k~ 270 (976)
+++.++ ... .. .. . ... .....+..... .|+
T Consensus 76 ~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~p 155 (849)
T COG3899 76 FRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHP 155 (849)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCC
Confidence 111111 100 00 00 0 000 11122333333 569
Q ss_pred eEEEEcCCCCCCccCcHhHHHhhcCCCC----CcEEE--EEcCch--hhhhccCCcceEecCCCCHHHHHHHHHHHhcCC
Q 002044 271 FLLILDDVWTDDYSKWEPFRRCLINGHR----ESRIL--VTTRKE--TVARMMESTDVIFIKELSEQECWALFKRFACFG 342 (976)
Q Consensus 271 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~----gs~ii--vTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~ 342 (976)
.++|+||+...|....+-+......... -..|. .|.+.. .+.........+.|.||+..+...+...... .
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~-~ 234 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLG-C 234 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhC-C
Confidence 9999999966665555554433332220 11222 223322 1222223357899999999999999987762 2
Q ss_pred CCCCcchhHHHHHHHHHhhcCCCchHHHHHhhhhccC------CCHHHHHHHHhhhhhhhhhhhhhhhHHHHhhhcCCcH
Q 002044 343 RSLSECEQLEEIGKKIVGKCKGLPLAAKTIGSLLRFK------RTREEWQSILDSEIWQLEEFEKGLLAPLLLSYNDLPT 416 (976)
Q Consensus 343 ~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~------~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~ 416 (976)
. .....+....|+++..|+|+.+..+-..+... .+...|..-..+ ....... +.+...+..-.+.||.
T Consensus 235 ~----~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~~~~~~-~~vv~~l~~rl~kL~~ 308 (849)
T COG3899 235 T----KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LGILATT-DAVVEFLAARLQKLPG 308 (849)
T ss_pred c----ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cCCchhh-HHHHHHHHHHHhcCCH
Confidence 1 22335566679999999999999988877653 233444322211 1111112 2366678888999999
Q ss_pred HHHHHHhhhcccCCCceeChHHHHHHHHHcCcccccCCchhhHHHHHHHHHHHHHhcCCccccccCCCCc-Ee---EEEe
Q 002044 417 IIKQCFLYCAVFPKDCFLERDELIKLWMAQGYIVQKGNKEMEMEMIGEGYFDYLATRSFFQEFEKDEAGI-VR---RCKM 492 (976)
Q Consensus 417 ~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~~L~~r~ll~~~~~~~~~~-~~---~~~m 492 (976)
..+..+-..|++...+ +.+.|-..|.. + . ...+....+.|....++...+....+. +. +-..
T Consensus 309 ~t~~Vl~~AA~iG~~F--~l~~La~l~~~--~--------~--~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~ 374 (849)
T COG3899 309 TTREVLKAAACIGNRF--DLDTLAALAED--S--------P--ALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFL 374 (849)
T ss_pred HHHHHHHHHHHhCccC--CHHHHHHHHhh--c--------h--HHHHHHHHHHhHhhceeccccccccccccchhhHHhh
Confidence 9999999999998654 45554444321 0 0 344555555555544443221111111 11 1246
Q ss_pred chhHHHHHHH
Q 002044 493 HDIVHDFAQF 502 (976)
Q Consensus 493 Hdlv~~l~~~ 502 (976)
|+.+++.+-.
T Consensus 375 H~~vqqaaY~ 384 (849)
T COG3899 375 HDRVQQAAYN 384 (849)
T ss_pred HHHHHHHHhc
Confidence 8887776644
No 38
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.66 E-value=4.5e-07 Score=94.15 Aligned_cols=170 Identities=16% Similarity=0.093 Sum_probs=100.2
Q ss_pred chhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCCCcccHHHH
Q 002044 179 RVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAPNLGELNSL 258 (976)
Q Consensus 179 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~~~~~~~~~ 258 (976)
.+..++.+.+++.. ...+.|.|+|.+|+|||+||+.+++. ........+++.+.-+..-
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~~------------- 80 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQA------------- 80 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHHh-------------
Confidence 45567777777542 24568899999999999999999983 3333334556655222110
Q ss_pred HHHHHHHHcCCceEEEEcCCCCCCcc-Cc-HhHHHhhcC-CCCCcEEEEEcCchh---------hhhccCCcceEecCCC
Q 002044 259 LLRIDAFIARKKFLLILDDVWTDDYS-KW-EPFRRCLIN-GHRESRILVTTRKET---------VARMMESTDVIFIKEL 326 (976)
Q Consensus 259 ~~~l~~~l~~k~~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L 326 (976)
...+...+.+ .-+||+||+..-... .| +.+...+.. ...+.++|+||+... +...+.....+++.++
T Consensus 81 ~~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l 159 (226)
T TIGR03420 81 DPEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPL 159 (226)
T ss_pred HHHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCC
Confidence 0111222333 348999999643322 23 334443332 123347999988532 1112222467999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHHhh
Q 002044 327 SEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTIGS 374 (976)
Q Consensus 327 ~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 374 (976)
++++...++...+-....... .+..+.|++.+.|.|..+..+..
T Consensus 160 ~~~e~~~~l~~~~~~~~~~~~----~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 160 SDEEKIAALQSRAARRGLQLP----DEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred CHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhccCCHHHHHHHHH
Confidence 999999998876532221112 34445577788888877765543
No 39
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.65 E-value=2.2e-07 Score=105.03 Aligned_cols=177 Identities=19% Similarity=0.195 Sum_probs=104.3
Q ss_pred CccccchhHHHH---HHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCC
Q 002044 174 SEVRGRVEEKNA---LKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAP 250 (976)
Q Consensus 174 ~~~~Gr~~~~~~---l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~ 250 (976)
.+++|++..+.. +..++. ......+.++|++|+||||+|+.+++. ....|...- . ...
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~------~~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~~~l~---a--------~~~ 72 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIE------AGRLSSMILWGPPGTGKTTLARIIAGA--TDAPFEALS---A--------VTS 72 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHH------cCCCceEEEECCCCCCHHHHHHHHHHH--hCCCEEEEe---c--------ccc
Confidence 468888777555 666665 234557888999999999999999883 333332111 0 011
Q ss_pred CcccHHHHHHHHHHHH-cCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEE--cCchh--hh-hccCCcceEecC
Q 002044 251 NLGELNSLLLRIDAFI-ARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVT--TRKET--VA-RMMESTDVIFIK 324 (976)
Q Consensus 251 ~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT--tR~~~--v~-~~~~~~~~~~l~ 324 (976)
...+............ .+++.+|++|+++.-.....+.+...+.. |..++|. |.+.. +. ........+.+.
T Consensus 73 ~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL~SR~~~~~~~ 149 (413)
T PRK13342 73 GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPALLSRAQVFELK 149 (413)
T ss_pred cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHHhccceeeEeC
Confidence 1122223333332222 45788999999976554455555555433 4445553 33321 11 112334789999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHHh
Q 002044 325 ELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTIG 373 (976)
Q Consensus 325 ~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 373 (976)
+++.++.++++.+.+....... ..-..+..+.|++.|+|.|..+..+.
T Consensus 150 ~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 150 PLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred CCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999988653211100 01224556678999999987654443
No 40
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.50 E-value=2.7e-06 Score=83.90 Aligned_cols=178 Identities=24% Similarity=0.294 Sum_probs=97.6
Q ss_pred CCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCCCc
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAPNL 252 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~~~ 252 (976)
-.+|+|.+.-++.+.-++...... .+...-+.+||++|+||||||+.+++ .....|.. .+ + +..
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r-~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~~---~s--------g--~~i 86 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKR-GEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFKI---TS--------G--PAI 86 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCT-TS---EEEEESSTTSSHHHHHHHHHH--HCT--EEE---EE--------C--CC-
T ss_pred HHHccCcHHHHhhhHHHHHHHHhc-CCCcceEEEECCCccchhHHHHHHHh--ccCCCeEe---cc--------c--hhh
Confidence 468999998888776555432211 23577889999999999999999999 44444431 11 1 111
Q ss_pred ccHHHHHHHHHHHHcCCceEEEEcCCCCCCccCcHhHHHhhcCC--------CCC-----------cEEEEEcCchhhhh
Q 002044 253 GELNSLLLRIDAFIARKKFLLILDDVWTDDYSKWEPFRRCLING--------HRE-----------SRILVTTRKETVAR 313 (976)
Q Consensus 253 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~--------~~g-----------s~iivTtR~~~v~~ 313 (976)
....++...+. .+ +++-+|++|.+..-+...-+.+..++.++ +++ +-|=-|||...+..
T Consensus 87 ~k~~dl~~il~-~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~ 164 (233)
T PF05496_consen 87 EKAGDLAAILT-NL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSS 164 (233)
T ss_dssp -SCHHHHHHHH-T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSH
T ss_pred hhHHHHHHHHH-hc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccch
Confidence 12222332222 23 35668888999765443334444444332 111 23445777766655
Q ss_pred ccCC--cceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHH
Q 002044 314 MMES--TDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTI 372 (976)
Q Consensus 314 ~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 372 (976)
.+.. .-+.+++..+.+|-.++..+.+..-.. +-.++.+.+|+++|.|-|--..-+
T Consensus 165 pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i----~i~~~~~~~Ia~rsrGtPRiAnrl 221 (233)
T PF05496_consen 165 PLRDRFGIVLRLEFYSEEELAKIVKRSARILNI----EIDEDAAEEIARRSRGTPRIANRL 221 (233)
T ss_dssp CCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHH
T ss_pred hHHhhcceecchhcCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHhcCCChHHHHHH
Confidence 4433 234579999999999999876633222 333677888999999999654433
No 41
>PF13173 AAA_14: AAA domain
Probab=98.49 E-value=3.6e-07 Score=85.00 Aligned_cols=119 Identities=22% Similarity=0.202 Sum_probs=75.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCCCC
Q 002044 202 QIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDDVWTD 281 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~ 281 (976)
+++.|.|+.|+||||++++++++.. ....++|++.+-....... ..+ ..+.+.+....++.+|+||++..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~i~iDEiq~- 72 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA-----DPD-LLEYFLELIKPGKKYIFIDEIQY- 72 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh-----hhh-hHHHHHHhhccCCcEEEEehhhh-
Confidence 5899999999999999999987422 2234555543111110000 000 23334444445788999999943
Q ss_pred CccCcHhHHHhhcCCCCCcEEEEEcCchhhhhc------cCCcceEecCCCCHHHH
Q 002044 282 DYSKWEPFRRCLINGHRESRILVTTRKETVARM------MESTDVIFIKELSEQEC 331 (976)
Q Consensus 282 ~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~------~~~~~~~~l~~L~~~~~ 331 (976)
..+|......+.+..+..+|++|+........ .+....++|.||+-.|.
T Consensus 73 -~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 73 -LPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred -hccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 45787777777666666799999987654422 23355789999997763
No 42
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.49 E-value=6.6e-06 Score=95.37 Aligned_cols=202 Identities=12% Similarity=0.035 Sum_probs=113.8
Q ss_pred CCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccch---hcccc--cceeehH--------
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDV---ISNFE--KRMWNCE-------- 239 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~f~--~~~wv~~-------- 239 (976)
+..+.||++++++|...|...-.+ .....++.|+|++|.|||+.++.|.+.... ....+ .+++|.+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkg-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQ-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhc-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 457899999999999998754321 223467889999999999999999874211 11111 1344433
Q ss_pred ---HHHHHHhCCCCC-cccHHHHHHHHHHHHc---CCceEEEEcCCCCCCccCcHhHHHhhcC-CCCCcEEEE--EcCch
Q 002044 240 ---SIIEALEGFAPN-LGELNSLLLRIDAFIA---RKKFLLILDDVWTDDYSKWEPFRRCLIN-GHRESRILV--TTRKE 309 (976)
Q Consensus 240 ---~~~~~l~~~~~~-~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iiv--TtR~~ 309 (976)
.+.+++.+..+. .....+....+...+. +...+||||+|..-....-+.|...+.+ ...+++|+| +|.+.
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 344455332221 2223344455555542 2245899999943211111122222221 224555554 33322
Q ss_pred h--------hhhccCCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHHhhhh
Q 002044 310 T--------VARMMESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTIGSLL 376 (976)
Q Consensus 310 ~--------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 376 (976)
. +...++ ...+...|.+.++-.+++..++-.......+..++-+|+.++..-|-.-.||.++-.+.
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 2 111121 23466799999999999999875332333445556666656655555667776665444
No 43
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.48 E-value=5.8e-06 Score=95.52 Aligned_cols=191 Identities=13% Similarity=0.128 Sum_probs=113.6
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccc---ccee-ehHHHHHH----H
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFE---KRMW-NCESIIEA----L 245 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~---~~~w-v~~~~~~~----l 245 (976)
.+++|.+..++.|.+++... .-...+.++|..|+||||+|+.+.+.......+. |... .|..+... +
T Consensus 16 dEVIGQe~Vv~~L~~aL~~g-----RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGG-----RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 57999999999999998732 2345677999999999999998877321111111 1100 01111100 0
Q ss_pred hC-CCCCcccHHHHHHHHHHH----HcCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCchh-hhhc-cCCc
Q 002044 246 EG-FAPNLGELNSLLLRIDAF----IARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKET-VARM-MEST 318 (976)
Q Consensus 246 ~~-~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~-~~~~ 318 (976)
.. .......+++....+... ..++.-++|||++..-....|..+...+.......++|+||++.. +... ....
T Consensus 91 iEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRC 170 (830)
T PRK07003 91 VEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC 170 (830)
T ss_pred EEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhhe
Confidence 00 000011122222222211 124455899999976555667778777766566778888887643 3222 2335
Q ss_pred ceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCc-hHHHHHh
Q 002044 319 DVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLP-LAAKTIG 373 (976)
Q Consensus 319 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~ 373 (976)
..+.+++++.++..+.+.+.+...+.... .+..+.|++.++|.. -|+..+-
T Consensus 171 q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id----~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 171 LQFNLKQMPAGHIVSHLERILGEERIAFE----PQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred EEEecCCcCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 78999999999999999887643222222 344556999998855 4555533
No 44
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.47 E-value=7.7e-09 Score=112.13 Aligned_cols=192 Identities=26% Similarity=0.277 Sum_probs=136.7
Q ss_pred CceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccccCccccc
Q 002044 551 RKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLPETCCE 628 (976)
Q Consensus 551 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp~~i~~ 628 (976)
..-...+++.|.+.. ++.-+..|-.|..|.|. .+.+..+|..+++|..|.||+| +++..+|..+|.
T Consensus 75 tdt~~aDlsrNR~~e------lp~~~~~f~~Le~liLy------~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~ 142 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSE------LPEEACAFVSLESLILY------HNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCD 142 (722)
T ss_pred cchhhhhcccccccc------CchHHHHHHHHHHHHHH------hccceecchhhhhhhHHHHhhhccchhhcCChhhhc
Confidence 334455667776533 22235666778888888 7778889999999999999999 789999999998
Q ss_pred cCCccEEecCCCCCCcccchhhcccCCCcEEEecccccccCcccccCCCCCCcCCceEEecCCCCCCCcccccccccccc
Q 002044 629 LLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLEYMPKGIERLTSLRTLSEFVVVNGSGKYGSKACNLEGLRYLN 708 (976)
Q Consensus 629 L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~ 708 (976)
|+ |++|-+++|+ ++.+|..|+-+..|.+|+.++|.+..+|..++.+++|+.|.+..+. ... ...+|..|
T Consensus 143 lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~-------lp~El~~L- 211 (722)
T KOG0532|consen 143 LP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LED-------LPEELCSL- 211 (722)
T ss_pred Cc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhh-------CCHHHhCC-
Confidence 85 9999999987 9999999999999999999999999999999999999988644332 000 01111111
Q ss_pred cCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEeecCCCCC
Q 002044 709 HLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITGFKGRTL 788 (976)
Q Consensus 709 ~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 788 (976)
.|..|++++|... .++-.+..+..|++|.|.+|....-
T Consensus 212 -----------------------------pLi~lDfScNkis-------------~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 212 -----------------------------PLIRLDFSCNKIS-------------YLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred -----------------------------ceeeeecccCcee-------------ecchhhhhhhhheeeeeccCCCCCC
Confidence 3455666655422 2334456677888888888877664
Q ss_pred Cccccc---ccccccEEEEeCCC
Q 002044 789 MLSWIV---SLNKLKKLRLLFCD 808 (976)
Q Consensus 789 ~p~~~~---~l~~L~~L~L~~~~ 808 (976)
|..+. ...=.++|+..-|.
T Consensus 250 -PAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 250 -PAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred -hHHHHhccceeeeeeecchhcc
Confidence 54443 34455667777773
No 45
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=1.3e-06 Score=99.83 Aligned_cols=192 Identities=19% Similarity=0.195 Sum_probs=117.4
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCC---
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAP--- 250 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~--- 250 (976)
.+++|.+...+.|..++.... -...+.++|++|+||||+|+.+++.......+...+|.|..-.....+...
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~ 88 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL 88 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE
Confidence 468999999888888887422 345779999999999999999987432222233345544311111111110
Q ss_pred -----CcccHHHHHHHHHHHH-----cCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcC-chhhhhcc-CCc
Q 002044 251 -----NLGELNSLLLRIDAFI-----ARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTR-KETVARMM-EST 318 (976)
Q Consensus 251 -----~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR-~~~v~~~~-~~~ 318 (976)
.....+. ++.+.+.+ .+++-++|+|+++......++.+...+......+.+|++|. ...+...+ ...
T Consensus 89 el~~~~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 89 EIDAASNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred EecccccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce
Confidence 1111222 22233332 24566999999976555667778777766555556665554 33433322 335
Q ss_pred ceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCch-HHHHHhhh
Q 002044 319 DVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPL-AAKTIGSL 375 (976)
Q Consensus 319 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~~ 375 (976)
..+++.+++.++..+.+.+.+...+.... .+....|++.++|.+- |+..+-.+
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi~i~----~~Al~~ia~~s~GdlR~aln~Lekl 221 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGREAE----PEALQLVARLADGAMRDAESLLERL 221 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 68999999999999999887643332222 3455669999999885 44444333
No 46
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.43 E-value=9.4e-09 Score=107.62 Aligned_cols=177 Identities=18% Similarity=0.240 Sum_probs=112.1
Q ss_pred HhhcCCCCCCCceEEEeecCCCCCCccc-c-cccccccEEEEeCCCCCCCC--CCC-CCCCCcceeeccccccceEeCcc
Q 002044 765 VCEALQPPPNLESLQITGFKGRTLMLSW-I-VSLNKLKKLRLLFCDKCEVM--PAL-GILPSLEVLKIRFMKSVKRVGNE 839 (976)
Q Consensus 765 ~~~~l~~~~~L~~L~L~~~~~~~~~p~~-~-~~l~~L~~L~L~~~~~~~~l--~~l-~~L~~L~~L~L~~~~~l~~~~~~ 839 (976)
+...-..+..|+.|..+++....-.+-| + .+.++|+.|.++.|+...+. ..+ .+.+.|+.|++.+|..+..- .
T Consensus 286 ~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--t 363 (483)
T KOG4341|consen 286 LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--T 363 (483)
T ss_pred HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--h
Confidence 3333344567788888777653321222 1 26788888888888765442 223 35677888877776532111 1
Q ss_pred ccCCCcCcccccccCCCCCCCCCccCccCCccceeeecccccccccc--cCCCccccCCCcceEeeecCCCCCCC-CcCC
Q 002044 840 FLGTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWD--FGKEDITIMPQLSSMKISYCSKLNSL-PDQL 916 (976)
Q Consensus 840 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~--~~~~~~~~l~~L~~L~l~~c~~L~~l-p~~l 916 (976)
+.. .....|.|+.|.+..|....+-. .......++..|+.+.+.+||.+.+- -+.+
T Consensus 364 L~s---------------------ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l 422 (483)
T KOG4341|consen 364 LAS---------------------LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL 422 (483)
T ss_pred Hhh---------------------hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHH
Confidence 110 12358899999998776554431 11222346889999999999976642 2446
Q ss_pred CCCCCCCeEEEccCcchHHhhccCCCCCcccccCCCceeecccccccCcchhhc
Q 002044 917 LQSTTLEELEIIRCPILEERFKKDTGEDWSKITHIPKIKIHGEYVQGSPPLLKS 970 (976)
Q Consensus 917 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~n~~~~~~~~~~~ 970 (976)
..+++|+.+++.+|..+.+. +.. .-..|+|++.++.....++||...+
T Consensus 423 ~~c~~Leri~l~~~q~vtk~----~i~--~~~~~lp~i~v~a~~a~~t~p~~v~ 470 (483)
T KOG4341|consen 423 SICRNLERIELIDCQDVTKE----AIS--RFATHLPNIKVHAYFAPVTPPGFVK 470 (483)
T ss_pred hhCcccceeeeechhhhhhh----hhH--HHHhhCccceehhhccCCCCccccc
Confidence 67789999999999766541 111 2347999999999999999997643
No 47
>PRK04195 replication factor C large subunit; Provisional
Probab=98.40 E-value=2.5e-05 Score=90.25 Aligned_cols=243 Identities=16% Similarity=0.116 Sum_probs=134.7
Q ss_pred CCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCCCc
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAPNL 252 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~~~ 252 (976)
..+++|.++.++.+.+|+..... ....+.+.|+|++|+||||+|+.++++. .|+.+.+ ++ .+.
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el----~~~~iel-na----------sd~ 75 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDY----GWEVIEL-NA----------SDQ 75 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHc----CCCEEEE-cc----------ccc
Confidence 35799999999999999875432 2236789999999999999999999842 1222221 11 001
Q ss_pred ccHHHHHHHHHHH-----Hc-CCceEEEEcCCCCCCc----cCcHhHHHhhcCCCCCcEEEEEcCchh-hhh-c-cCCcc
Q 002044 253 GELNSLLLRIDAF-----IA-RKKFLLILDDVWTDDY----SKWEPFRRCLINGHRESRILVTTRKET-VAR-M-MESTD 319 (976)
Q Consensus 253 ~~~~~~~~~l~~~-----l~-~k~~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~-~-~~~~~ 319 (976)
...+.....+... +. .++-+||+|+++.-.. ..+..+...+.. .+..||+|+.+.. ... . -....
T Consensus 76 r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr~~ 153 (482)
T PRK04195 76 RTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNACL 153 (482)
T ss_pred ccHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhccce
Confidence 1111111111111 11 3678999999964321 234555555543 2345666665421 111 1 12356
Q ss_pred eEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHHhhhhccCC---CHHHHHHHHhhhhhhh
Q 002044 320 VIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTIGSLLRFKR---TREEWQSILDSEIWQL 396 (976)
Q Consensus 320 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~---~~~~w~~~l~~~~~~~ 396 (976)
.+.+.+++.++....+...+...+.... .+....|++.++|-.-.+......+.... +.+....+..
T Consensus 154 ~I~f~~~~~~~i~~~L~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~------ 223 (482)
T PRK04195 154 MIEFKRLSTRSIVPVLKRICRKEGIECD----DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR------ 223 (482)
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc------
Confidence 7999999999999988877644332222 34556689999986654433222232221 2333322221
Q ss_pred hhhhhhhhHHHHhhhc-CCcHHHHHHHhhhcccCCCceeChHHHHHHHHHcCccccc
Q 002044 397 EEFEKGLLAPLLLSYN-DLPTIIKQCFLYCAVFPKDCFLERDELIKLWMAQGYIVQK 452 (976)
Q Consensus 397 ~~~~~~~~~~l~~sy~-~L~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~ 452 (976)
.+....++.++..-+. .-+......+..+. ++. ..+-.|+.+.+....
T Consensus 224 ~d~~~~if~~l~~i~~~k~~~~a~~~~~~~~-------~~~-~~i~~~l~en~~~~~ 272 (482)
T PRK04195 224 RDREESIFDALDAVFKARNADQALEASYDVD-------EDP-DDLIEWIDENIPKEY 272 (482)
T ss_pred CCCCCCHHHHHHHHHCCCCHHHHHHHHHccc-------CCH-HHHHHHHHhcccccc
Confidence 1122346666664443 33333333332221 233 356789999987653
No 48
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.39 E-value=2.2e-06 Score=101.71 Aligned_cols=168 Identities=21% Similarity=0.265 Sum_probs=96.9
Q ss_pred CccccchhHHH---HHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCC
Q 002044 174 SEVRGRVEEKN---ALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAP 250 (976)
Q Consensus 174 ~~~~Gr~~~~~---~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~ 250 (976)
.+|+|.+..+. .+...+. .+....+.++|++|+||||+|+.+++ ....+|.. +... ..
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~------~~~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f~~---lna~--------~~ 88 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIK------ADRVGSLILYGPPGVGKTTLARIIAN--HTRAHFSS---LNAV--------LA 88 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHh------cCCCceEEEECCCCCCHHHHHHHHHH--HhcCccee---ehhh--------hh
Confidence 46889887764 4555554 23456678999999999999999998 34444421 1110 01
Q ss_pred CcccHHHHHHHHHHHH--cCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCchh----hhhc-cCCcceEec
Q 002044 251 NLGELNSLLLRIDAFI--ARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKET----VARM-MESTDVIFI 323 (976)
Q Consensus 251 ~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~----v~~~-~~~~~~~~l 323 (976)
...+..+......+.+ .+++.+|||||++.-....++.+...+. .|+.++|++..+. +... .....++.+
T Consensus 89 ~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l 165 (725)
T PRK13341 89 GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFRL 165 (725)
T ss_pred hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccccceec
Confidence 1112222333333332 2467799999996544444555554332 3555555433222 1111 123568999
Q ss_pred CCCCHHHHHHHHHHHhcC------CCCCCcchhHHHHHHHHHhhcCCCc
Q 002044 324 KELSEQECWALFKRFACF------GRSLSECEQLEEIGKKIVGKCKGLP 366 (976)
Q Consensus 324 ~~L~~~~~~~Lf~~~~~~------~~~~~~~~~~~~~~~~i~~~c~GlP 366 (976)
++++.++...++.+.+-. ..... --.+....|++.+.|.-
T Consensus 166 ~pLs~edi~~IL~~~l~~~~~~~g~~~v~---I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 166 KSLSDEDLHQLLKRALQDKERGYGDRKVD---LEPEAEKHLVDVANGDA 211 (725)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCcccC---CCHHHHHHHHHhCCCCH
Confidence 999999999999876531 11111 11344566888888754
No 49
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.38 E-value=5.3e-06 Score=92.03 Aligned_cols=186 Identities=13% Similarity=0.050 Sum_probs=105.0
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccc-cceeehH-HHHHH----HhC
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFE-KRMWNCE-SIIEA----LEG 247 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~-~~~~~----l~~ 247 (976)
.+++|++..++.+..++.. +..+.+.++|++|+||||+|+.+++... ...+. ..+.+++ +.... +..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDS------PNLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred HHhcCCHHHHHHHHHHHhC------CCCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhc
Confidence 5689999999999988863 2344578999999999999999887321 11111 1233333 11111 000
Q ss_pred CCC-----C-----cccHHHHHHHHHHHH------cCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCch-h
Q 002044 248 FAP-----N-----LGELNSLLLRIDAFI------ARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKE-T 310 (976)
Q Consensus 248 ~~~-----~-----~~~~~~~~~~l~~~l------~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~ 310 (976)
... . ..........+.+.. ...+-+||+||+..-.......+...+......+++|+||... .
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 000 0 000011111111111 1345589999995433333444555554444556788887543 2
Q ss_pred hhhcc-CCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHH
Q 002044 311 VARMM-ESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAK 370 (976)
Q Consensus 311 v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 370 (976)
+...+ .....+.+.+++.++..+++...+...+.... .+..+.+++.++|.+-.+.
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~----~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD----DDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 22211 23467889999999999999887643222222 4455668888888765443
No 50
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.37 E-value=2.7e-07 Score=104.83 Aligned_cols=102 Identities=30% Similarity=0.439 Sum_probs=88.5
Q ss_pred HhcCCCcceEEecCcccccCCCCcccCccccCCC-ccceecC--ccccccCccccccCCccEEecCCCCCCcccchhhcc
Q 002044 576 FDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLR-HLRYLKL--YLVEKLPETCCELLNLQTLNMCGSPGLKRLPQGIGK 652 (976)
Q Consensus 576 ~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~-~Lr~L~L--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~ 652 (976)
...++.++.|++. ++.+..+|..++.+. +|++|++ +.+..+|..++.+++|+.|++++|. +..+|...+.
T Consensus 112 ~~~~~~l~~L~l~------~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~ 184 (394)
T COG4886 112 LLELTNLTSLDLD------NNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSN 184 (394)
T ss_pred hhcccceeEEecC------CcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhh
Confidence 4556789999998 788889998888885 9999999 7888998889999999999999998 9999988889
Q ss_pred cCCCcEEEecccccccCcccccCCCCCCcCCc
Q 002044 653 LINLRHLMFEVDYLEYMPKGIERLTSLRTLSE 684 (976)
Q Consensus 653 l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~ 684 (976)
+++|+.|+++++.+..+|..++.+..|++|.+
T Consensus 185 ~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~ 216 (394)
T COG4886 185 LSNLNNLDLSGNKISDLPPEIELLSALEELDL 216 (394)
T ss_pred hhhhhheeccCCccccCchhhhhhhhhhhhhh
Confidence 99999999999999999987767777777753
No 51
>PLN03025 replication factor C subunit; Provisional
Probab=98.34 E-value=5.5e-06 Score=90.41 Aligned_cols=174 Identities=16% Similarity=0.138 Sum_probs=102.4
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCCCcc
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAPNLG 253 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~~~~ 253 (976)
.+++|.++.++.|..++.. +..+-+.++|++|+||||+|+.+++.. ....|...+ +. + ...+..
T Consensus 13 ~~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~-~e------l--n~sd~~ 76 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARD------GNMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAV-LE------L--NASDDR 76 (319)
T ss_pred HHhcCcHHHHHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHH-hcccCccce-ee------e--cccccc
Confidence 4688998888888887763 234446799999999999999998731 112222111 00 0 001111
Q ss_pred cHHHHHHHHHHHH-------cCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCch-hhhhcc-CCcceEecC
Q 002044 254 ELNSLLLRIDAFI-------ARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKE-TVARMM-ESTDVIFIK 324 (976)
Q Consensus 254 ~~~~~~~~l~~~l-------~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~ 324 (976)
..+.....+.... .++.-++|+|++..-.......+...+......+++|+++... .+.... .....++++
T Consensus 77 ~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~ 156 (319)
T PLN03025 77 GIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFS 156 (319)
T ss_pred cHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCC
Confidence 1222222222211 1346699999996544344455555554444557787777543 222211 234689999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCch
Q 002044 325 ELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPL 367 (976)
Q Consensus 325 ~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 367 (976)
++++++....+...+-..+.... .+....|++.++|-.-
T Consensus 157 ~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 157 RLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMR 195 (319)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHH
Confidence 99999999999887643332222 3345668889988653
No 52
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=8.1e-06 Score=88.89 Aligned_cols=179 Identities=13% Similarity=0.132 Sum_probs=113.6
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhccc----chhcccccceeehHHHHHHHhCCC
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDE----DVISNFEKRMWNCESIIEALEGFA 249 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~----~~~~~f~~~~wv~~~~~~~l~~~~ 249 (976)
.+++|.+..++.+..++... .-.....++|+.|+||||+|+.+++.. ....|.|...|... .+..
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~------~~~~ 72 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI------NKKS 72 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc------cCCC
Confidence 46889999999999988642 234677899999999999999988721 12234454444321 1111
Q ss_pred CCcccHHHHHHHHHH-HHcCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCchh-hhhc-cCCcceEecCCC
Q 002044 250 PNLGELNSLLLRIDA-FIARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKET-VARM-MESTDVIFIKEL 326 (976)
Q Consensus 250 ~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~-~~~~~~~~l~~L 326 (976)
....++.++...+.. -..+++-++|+|++..-+...+..+...+.....++.+|++|.+.+ +... ......+.+.++
T Consensus 73 i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~ 152 (313)
T PRK05564 73 IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRL 152 (313)
T ss_pred CCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCc
Confidence 111222222222211 1234556777887755555678889888888778889988886543 2221 233578999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHH
Q 002044 327 SEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKT 371 (976)
Q Consensus 327 ~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 371 (976)
++++....+..... . .. .+.++.++..++|.|.-+..
T Consensus 153 ~~~~~~~~l~~~~~---~-~~----~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 153 SKEEIEKFISYKYN---D-IK----EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred CHHHHHHHHHHHhc---C-CC----HHHHHHHHHHcCCCHHHHHH
Confidence 99999888865431 1 11 23356789999999875543
No 53
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=8.4e-06 Score=90.41 Aligned_cols=185 Identities=15% Similarity=0.172 Sum_probs=109.4
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhccccc-ceeeh---HHHHHHHhC--
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEK-RMWNC---ESIIEALEG-- 247 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~---~~~~~~l~~-- 247 (976)
.+++|.+..++.+...+... .-...+.++|+.|+||||+|+.+++.......+.. .+..| ..+......
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~-----~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG-----RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 57899999999999888642 23467899999999999999999873211111110 01111 111110000
Q ss_pred --CCC-CcccHHHHHHHHHHHH-----cCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCch-hhhhc-cCC
Q 002044 248 --FAP-NLGELNSLLLRIDAFI-----ARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKE-TVARM-MES 317 (976)
Q Consensus 248 --~~~-~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~-~~~ 317 (976)
... .....++ ...+.+.+ .+++-++|+|++..-....++.+...+.......++|++|.+. .+... ...
T Consensus 91 ~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SR 169 (363)
T PRK14961 91 IEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSR 169 (363)
T ss_pred EEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhh
Confidence 000 0012222 22233332 2345699999996554445677777776655667777776543 33322 233
Q ss_pred cceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchH
Q 002044 318 TDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLA 368 (976)
Q Consensus 318 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 368 (976)
...+++.+++.++..+.+...+...+.... .+.+..|++.++|.|-.
T Consensus 170 c~~~~~~~l~~~el~~~L~~~~~~~g~~i~----~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 170 CLQFKLKIISEEKIFNFLKYILIKESIDTD----EYALKLIAYHAHGSMRD 216 (363)
T ss_pred ceEEeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 578999999999999988876643222121 34456689999998853
No 54
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=4.5e-06 Score=95.43 Aligned_cols=186 Identities=15% Similarity=0.137 Sum_probs=111.3
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhccccccee-ehHHHHHHHh-CCCCC
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMW-NCESIIEALE-GFAPN 251 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w-v~~~~~~~l~-~~~~~ 251 (976)
.+++|.+...+.|..++... .-...+.++|+.|+||||+|+.+++............. .| ..-..+. +...+
T Consensus 15 ddVIGQe~vv~~L~~aI~~g-----rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C-~sC~~I~~g~hpD 88 (702)
T PRK14960 15 NELVGQNHVSRALSSALERG-----RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC-ATCKAVNEGRFID 88 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC-HHHHHHhcCCCCc
Confidence 57999999999999998742 23468899999999999999999873211111110000 00 0001110 10000
Q ss_pred --------cccHHHH---HHHHHH-HHcCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCchh-hhh-ccCC
Q 002044 252 --------LGELNSL---LLRIDA-FIARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKET-VAR-MMES 317 (976)
Q Consensus 252 --------~~~~~~~---~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~-~~~~ 317 (976)
...+++. ...+.. -..+++-++|+|++..-+...+..+...+.....+.++|++|.+.. +.. ....
T Consensus 89 viEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSR 168 (702)
T PRK14960 89 LIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 (702)
T ss_pred eEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHh
Confidence 1122222 222111 1235667999999966555566777777766556677888776532 221 1244
Q ss_pred cceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHH
Q 002044 318 TDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAA 369 (976)
Q Consensus 318 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 369 (976)
...+++++++.++..+.+.+.+...+.... .+....|++.++|.+-.+
T Consensus 169 Cq~feFkpLs~eEI~k~L~~Il~kEgI~id----~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 169 CLQFTLRPLAVDEITKHLGAILEKEQIAAD----QDAIWQIAESAQGSLRDA 216 (702)
T ss_pred hheeeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 678999999999999999887644332222 334456899999977433
No 55
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=7.2e-06 Score=93.87 Aligned_cols=193 Identities=17% Similarity=0.170 Sum_probs=112.0
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhccc---ccc-eeehHHHHH----H-
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNF---EKR-MWNCESIIE----A- 244 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~-~wv~~~~~~----~- 244 (976)
.+++|.+..++.+...+... .-...+.++|+.|+||||+|+.+++...-.... +|. +..|..+.. .
T Consensus 16 ~diiGq~~~v~~L~~~i~~~-----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ-----KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 57899999999999888642 234567899999999999999998621100000 010 000001000 0
Q ss_pred --HhC-CCCCcccHHHHHHHHHHH-HcCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcC-chhhhhc-cCCc
Q 002044 245 --LEG-FAPNLGELNSLLLRIDAF-IARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTR-KETVARM-MEST 318 (976)
Q Consensus 245 --l~~-~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR-~~~v~~~-~~~~ 318 (976)
+.. ...+..+..++...+... ..+++-++|+|++..-....++.+...+......+.+|++|. ...+... ....
T Consensus 91 ieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc 170 (546)
T PRK14957 91 IEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRC 170 (546)
T ss_pred EEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHhe
Confidence 000 011112223333333221 235677999999966555667778777776555666665554 3333322 2346
Q ss_pred ceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCc-hHHHHHhhh
Q 002044 319 DVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLP-LAAKTIGSL 375 (976)
Q Consensus 319 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~~~ 375 (976)
..+++++++.++..+.+.+.+-..+... .......|++.++|.+ -|+..+-.+
T Consensus 171 ~~~~f~~Ls~~eI~~~L~~il~~egi~~----e~~Al~~Ia~~s~GdlR~alnlLek~ 224 (546)
T PRK14957 171 IQLHLKHISQADIKDQLKIILAKENINS----DEQSLEYIAYHAKGSLRDALSLLDQA 224 (546)
T ss_pred eeEEeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 7899999999998888877653322111 1334456889999866 455555433
No 56
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=9.8e-06 Score=95.64 Aligned_cols=188 Identities=14% Similarity=0.160 Sum_probs=113.3
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhccc---cccee-ehHHHHHH-----
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNF---EKRMW-NCESIIEA----- 244 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~w-v~~~~~~~----- 244 (976)
.+++|.+..++.|.+++... .-...+.++|..|+||||+|+.+++........ .|... .|..+...
T Consensus 16 ddIIGQe~Iv~~LknaI~~~-----rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQ-----RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhC-----CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 57999999999999888732 124566899999999999999998742111111 11110 01111110
Q ss_pred --HhCC-CCCcccHHHHHHHHHHH-HcCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCc-hhhhhc-cCCc
Q 002044 245 --LEGF-APNLGELNSLLLRIDAF-IARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRK-ETVARM-MEST 318 (976)
Q Consensus 245 --l~~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~-~~~~ 318 (976)
+.+. .....++.++...+... ..+++-++|||++..-....++.|...+-......++|++|.+ ..+... ....
T Consensus 91 iEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRC 170 (944)
T PRK14949 91 IEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRC 170 (944)
T ss_pred EEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhh
Confidence 0000 01122233333333211 2356779999999766556677777777665555677666654 333322 2345
Q ss_pred ceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHH
Q 002044 319 DVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAK 370 (976)
Q Consensus 319 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 370 (976)
..|++++++.++..+.+.+.+-..+... ..+....|++.++|.|--+.
T Consensus 171 q~f~fkpLs~eEI~~~L~~il~~EgI~~----edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 171 LQFNLKSLTQDEIGTQLNHILTQEQLPF----EAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred eEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 7899999999999999988663322111 23455669999999885333
No 57
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.30 E-value=4.6e-07 Score=87.65 Aligned_cols=127 Identities=27% Similarity=0.295 Sum_probs=52.2
Q ss_pred cccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccccCcc
Q 002044 548 FYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLPET 625 (976)
Q Consensus 548 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp~~ 625 (976)
.++.++|.|++.++.+... ..+-..+.+|++|+|+ ++.+..++ .+..+++|+.|++ +.+..+++.
T Consensus 16 ~n~~~~~~L~L~~n~I~~I------e~L~~~l~~L~~L~Ls------~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~ 82 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI------ENLGATLDKLEVLDLS------NNQITKLE-GLPGLPRLKTLDLSNNRISSISEG 82 (175)
T ss_dssp --------------------------S--TT-TT--EEE-T------TS--S--T-T----TT--EEE--SS---S-CHH
T ss_pred ccccccccccccccccccc------cchhhhhcCCCEEECC------CCCCcccc-CccChhhhhhcccCCCCCCccccc
Confidence 4455789999999875432 2212357889999999 77777774 5778899999999 678888765
Q ss_pred c-cccCCccEEecCCCCCCcccc--hhhcccCCCcEEEecccccccCcc----cccCCCCCCcCCceEEe
Q 002044 626 C-CELLNLQTLNMCGSPGLKRLP--QGIGKLINLRHLMFEVDYLEYMPK----GIERLTSLRTLSEFVVV 688 (976)
Q Consensus 626 i-~~L~~L~~L~l~~~~~l~~lp--~~i~~l~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~~~~~~ 688 (976)
+ ..+++|++|++++|. +..+- ..+..+++|++|++.+|.+...+. -|..+++|+.|+...+.
T Consensus 83 l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp HHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred hHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence 5 368999999999887 65543 346788999999998888876653 36778888888755543
No 58
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=4.1e-06 Score=93.16 Aligned_cols=185 Identities=14% Similarity=0.119 Sum_probs=109.3
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccc-cceeehH---HHHHHHhC--
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFE-KRMWNCE---SIIEALEG-- 247 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~---~~~~~l~~-- 247 (976)
.+++|.+..+..|..++.... -...+.++|+.|+||||+|+.+++...-..... ..+..|. .+......
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dv 92 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDV 92 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccc
Confidence 578999999999988887421 235689999999999999999987321110000 0111111 11111100
Q ss_pred ------CCCCcccHHHHHHHHHHH-HcCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcC-chhhhhcc-CCc
Q 002044 248 ------FAPNLGELNSLLLRIDAF-IARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTR-KETVARMM-EST 318 (976)
Q Consensus 248 ------~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR-~~~v~~~~-~~~ 318 (976)
...+..++.++...+... ..++.-++|+|++..-....++.+...+........+|++|. ...+...+ ...
T Consensus 93 iEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRC 172 (484)
T PRK14956 93 LEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRC 172 (484)
T ss_pred eeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhh
Confidence 001112222333332221 235666999999976656667777777655444555554554 34443332 335
Q ss_pred ceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCch
Q 002044 319 DVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPL 367 (976)
Q Consensus 319 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 367 (976)
..|.+.+++.++..+.+.+.+-..+.... .+....|++.++|.+-
T Consensus 173 q~~~f~~ls~~~i~~~L~~i~~~Egi~~e----~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 173 QDFIFKKVPLSVLQDYSEKLCKIENVQYD----QEGLFWIAKKGDGSVR 217 (484)
T ss_pred heeeecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCChHH
Confidence 78999999999999988887643222122 3455669999999874
No 59
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=7.7e-06 Score=93.31 Aligned_cols=189 Identities=13% Similarity=0.098 Sum_probs=110.8
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhc---cc-----ccceeehH-HHHH-
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVIS---NF-----EKRMWNCE-SIIE- 243 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~f-----~~~~wv~~-~~~~- 243 (976)
.++||.+..++.|.+++.... -...+.++|..|+||||+|+.+.+...... .. .|..+-.+ .|..
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAG 90 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcC
Confidence 579999999999999987432 346778999999999999999876321100 00 11111001 1100
Q ss_pred ----H--HhC-CCCCcccHHHHHHHHHHH-HcCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcC-chhhhhc
Q 002044 244 ----A--LEG-FAPNLGELNSLLLRIDAF-IARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTR-KETVARM 314 (976)
Q Consensus 244 ----~--l~~-~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR-~~~v~~~ 314 (976)
. +.. ......++.++.+.+... ..++.-++|+|++..-....++.|...+..-..+.++|++|. ...+...
T Consensus 91 ~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpT 170 (700)
T PRK12323 91 RFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVT 170 (700)
T ss_pred CCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhH
Confidence 0 000 011112222222222111 235566999999976655667777777665445556555554 4444433
Q ss_pred c-CCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHH
Q 002044 315 M-ESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKT 371 (976)
Q Consensus 315 ~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 371 (976)
+ .....+.++.++.++..+.+.+.+-..+.... .+..+.|++.++|.|.....
T Consensus 171 IrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d----~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 171 VLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE----VNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred HHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 2 33678999999999999998876632221111 33446689999999864443
No 60
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.28 E-value=8.7e-06 Score=95.97 Aligned_cols=161 Identities=22% Similarity=0.246 Sum_probs=100.9
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhccc---ccceeehH----------H
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNF---EKRMWNCE----------S 240 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~----------~ 240 (976)
++++|++..+..+.+.+.. .....+.|+|++|+||||+|+.+++.......+ ...-|+.+ .
T Consensus 154 ~~iiGqs~~~~~l~~~ia~------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVAS------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 4689999999988887752 234579999999999999999998743222221 11122211 0
Q ss_pred HHHHHhCCC-----------------------------------CCcccH-HHHHHHHHHHHcCCceEEEEcCCCCCCcc
Q 002044 241 IIEALEGFA-----------------------------------PNLGEL-NSLLLRIDAFIARKKFLLILDDVWTDDYS 284 (976)
Q Consensus 241 ~~~~l~~~~-----------------------------------~~~~~~-~~~~~~l~~~l~~k~~LlVlDdv~~~~~~ 284 (976)
+...+.+.. .+...+ ...+..+.+.+.++++.++-|+.|..+..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 100000000 000111 23466788888889999998888877777
Q ss_pred CcHhHHHhhcCCCCCcEEEE--EcCchh-hhhcc-CCcceEecCCCCHHHHHHHHHHHhc
Q 002044 285 KWEPFRRCLINGHRESRILV--TTRKET-VARMM-ESTDVIFIKELSEQECWALFKRFAC 340 (976)
Q Consensus 285 ~~~~l~~~l~~~~~gs~iiv--TtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~ 340 (976)
.|+.+...+....+...|++ ||++.. +...+ .....+.+.+++.+|.++++.+.+-
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH
Confidence 78888776666655555555 555432 11111 2235778999999999999998763
No 61
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.28 E-value=1.3e-05 Score=88.10 Aligned_cols=176 Identities=15% Similarity=0.106 Sum_probs=104.0
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCCCcc
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAPNLG 253 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~~~~ 253 (976)
.+++|+++.++.+..++.. ...+.+.++|.+|+||||+|+.+++.. ....+.. .++... ..+..
T Consensus 17 ~~~~g~~~~~~~l~~~i~~------~~~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~~-~~i~~~--------~~~~~ 80 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKE------KNMPHLLFAGPPGTGKTTAALALAREL-YGEDWRE-NFLELN--------ASDER 80 (319)
T ss_pred HHhcCcHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHHH-cCCcccc-ceEEec--------ccccc
Confidence 5689999999999998863 234457999999999999999998731 1111111 111110 00111
Q ss_pred cHHHHHHHHHHHHc------CCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCch-hhhhc-cCCcceEecCC
Q 002044 254 ELNSLLLRIDAFIA------RKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKE-TVARM-MESTDVIFIKE 325 (976)
Q Consensus 254 ~~~~~~~~l~~~l~------~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~-~~~~~~~~l~~ 325 (976)
..+.....+.+... ..+-++|+|++..-.......+...+......+++|+++... .+... ......+++.+
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~ 160 (319)
T PRK00440 81 GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSP 160 (319)
T ss_pred chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCC
Confidence 11111122222221 235689999985433334455666665545556777777432 22111 12345789999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHH
Q 002044 326 LSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAA 369 (976)
Q Consensus 326 L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 369 (976)
++.++....+...+...+.... .+....+++.++|.+--+
T Consensus 161 l~~~ei~~~l~~~~~~~~~~i~----~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 161 LKKEAVAERLRYIAENEGIEIT----DDALEAIYYVSEGDMRKA 200 (319)
T ss_pred CCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 9999998888887643322222 344556889999987543
No 62
>PRK08727 hypothetical protein; Validated
Probab=98.28 E-value=1.9e-05 Score=81.74 Aligned_cols=147 Identities=14% Similarity=-0.006 Sum_probs=85.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCCCC
Q 002044 202 QIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDDVWTD 281 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~ 281 (976)
..+.|+|..|+|||+|++.+++. .......+.|+...- .. .......+.+ .+.-+||+||+...
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~---~~----------~~~~~~~~~l-~~~dlLiIDDi~~l 105 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA---AA----------GRLRDALEAL-EGRSLVALDGLESI 105 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH---hh----------hhHHHHHHHH-hcCCEEEEeCcccc
Confidence 45999999999999999999883 333333455665411 00 0011111222 23459999999432
Q ss_pred C-ccCcHh-HHHhhcC-CCCCcEEEEEcCchh---------hhhccCCcceEecCCCCHHHHHHHHHHHhcCCCCCCcch
Q 002044 282 D-YSKWEP-FRRCLIN-GHRESRILVTTRKET---------VARMMESTDVIFIKELSEQECWALFKRFACFGRSLSECE 349 (976)
Q Consensus 282 ~-~~~~~~-l~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~ 349 (976)
. ...|.. +...+.. ...|..||+||+... +...+....++++++++.++-.+++.+++...+-..+
T Consensus 106 ~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~-- 183 (233)
T PRK08727 106 AGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALD-- 183 (233)
T ss_pred cCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCC--
Confidence 1 122332 2222221 124567999998522 2222333568999999999999999987643222122
Q ss_pred hHHHHHHHHHhhcCCCchH
Q 002044 350 QLEEIGKKIVGKCKGLPLA 368 (976)
Q Consensus 350 ~~~~~~~~i~~~c~GlPLa 368 (976)
.+...-|++.++|-.-.
T Consensus 184 --~e~~~~La~~~~rd~r~ 200 (233)
T PRK08727 184 --EAAIDWLLTHGERELAG 200 (233)
T ss_pred --HHHHHHHHHhCCCCHHH
Confidence 34445577777765443
No 63
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.26 E-value=9e-08 Score=95.61 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=17.8
Q ss_pred cccCCCcceEeeecCCCCCCCCc
Q 002044 892 ITIMPQLSSMKISYCSKLNSLPD 914 (976)
Q Consensus 892 ~~~l~~L~~L~l~~c~~L~~lp~ 914 (976)
++++|+|+.|.+.++| +..+|+
T Consensus 395 IG~LPCLE~l~L~~NP-l~~~vd 416 (490)
T KOG1259|consen 395 IGNLPCLETLRLTGNP-LAGSVD 416 (490)
T ss_pred cccccHHHHHhhcCCC-ccccch
Confidence 6789999999999998 666654
No 64
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=6.7e-06 Score=93.58 Aligned_cols=185 Identities=16% Similarity=0.172 Sum_probs=111.2
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcc------c-ccc-eeehHHHHHHH
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISN------F-EKR-MWNCESIIEAL 245 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------f-~~~-~wv~~~~~~~l 245 (976)
.+++|.+..+..+...+... .-.+.+.++|+.|+||||+|+.+++....... + .|. +..|..+....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~-----ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILND-----RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCC
Confidence 46899999999888877632 23467889999999999999999873211111 1 111 11111221110
Q ss_pred hC--------CCCCcccHHHHHHHHHH-HHcCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEE-EcCchhhhhcc
Q 002044 246 EG--------FAPNLGELNSLLLRIDA-FIARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILV-TTRKETVARMM 315 (976)
Q Consensus 246 ~~--------~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-TtR~~~v~~~~ 315 (976)
.. ......++.++...... -..+++-++|+|+++.-....|+.+...+......+.+|+ ||+...+...+
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI 175 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATI 175 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHH
Confidence 00 01111122222222211 1235677999999987656678888888776556666665 44444444332
Q ss_pred -CCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCch
Q 002044 316 -ESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPL 367 (976)
Q Consensus 316 -~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 367 (976)
.....+++++++.++..+.+...+...+.... .+....|++.++|.+-
T Consensus 176 ~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie----~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 176 ISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD----IEALRIIAYKSEGSAR 224 (507)
T ss_pred HhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHH
Confidence 33568999999999999999988743332222 3344558889998774
No 65
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.25 E-value=5.3e-06 Score=79.55 Aligned_cols=124 Identities=21% Similarity=0.149 Sum_probs=68.7
Q ss_pred ccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHH-HHHHHhCCCCCcccH
Q 002044 177 RGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCES-IIEALEGFAPNLGEL 255 (976)
Q Consensus 177 ~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~l~~~~~~~~~~ 255 (976)
+|++..+..+...+.. ...+.+.|+|.+|+||||+|+.+++. ....-..++++... .......... ...
T Consensus 1 ~~~~~~~~~i~~~~~~------~~~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~~~~~~~~--~~~ 70 (151)
T cd00009 1 VGQEEAIEALREALEL------PPPKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEGLVVAEL--FGH 70 (151)
T ss_pred CchHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhhhhHHHHH--hhh
Confidence 4788888898888863 23568899999999999999999984 22212234454431 1100000000 000
Q ss_pred HHHHHHHHHHHcCCceEEEEcCCCCCCccCcHhHHHhhcCC------CCCcEEEEEcCchh
Q 002044 256 NSLLLRIDAFIARKKFLLILDDVWTDDYSKWEPFRRCLING------HRESRILVTTRKET 310 (976)
Q Consensus 256 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~------~~gs~iivTtR~~~ 310 (976)
.............++.++|+||++.-.......+...+... ..+..||+||....
T Consensus 71 ~~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 71 FLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hhHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 00111112233457889999999643112222333333332 35778888888654
No 66
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.24 E-value=1.3e-05 Score=81.39 Aligned_cols=184 Identities=17% Similarity=0.150 Sum_probs=114.7
Q ss_pred CCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCCCc
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAPNL 252 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~~~ 252 (976)
..+++|.+..+..+...+.. ...+....+|++|.|||+-|..++....-.+-|.+++. +.-.....+.
T Consensus 35 ~de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl------~lnaSderGi 102 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVL------ELNASDERGI 102 (346)
T ss_pred HHhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchh------hhcccccccc
Confidence 35789999999999998874 35778899999999999999988874222344554432 0000111111
Q ss_pred ccHHHHHHHHHHHHc---------CCc-eEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCc-hhhhhcc-CCcce
Q 002044 253 GELNSLLLRIDAFIA---------RKK-FLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRK-ETVARMM-ESTDV 320 (976)
Q Consensus 253 ~~~~~~~~~l~~~l~---------~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~-~~~~~ 320 (976)
.-..+......+... .++ -.+|||++..-..+.|..++..+......++.|+.+.. ..+...+ ....-
T Consensus 103 svvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~K 182 (346)
T KOG0989|consen 103 SVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQK 182 (346)
T ss_pred cchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHH
Confidence 111111111111111 123 37899999877788999999988876666776555543 3332222 23457
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCC-chHHHHH
Q 002044 321 IFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGL-PLAAKTI 372 (976)
Q Consensus 321 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~ 372 (976)
|..++|.+++...-+...+-.++...++ +..+.|++.++|- --|+.++
T Consensus 183 frFk~L~d~~iv~rL~~Ia~~E~v~~d~----~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 183 FRFKKLKDEDIVDRLEKIASKEGVDIDD----DALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred hcCCCcchHHHHHHHHHHHHHhCCCCCH----HHHHHHHHHcCCcHHHHHHHH
Confidence 8899999999999998887554444443 3444588888883 3344433
No 67
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=4.2e-07 Score=96.05 Aligned_cols=139 Identities=19% Similarity=0.220 Sum_probs=83.1
Q ss_pred CCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCC--CC
Q 002044 737 KNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEV--MP 814 (976)
Q Consensus 737 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~--l~ 814 (976)
.+|+.|.++.|... ..++...+..+|+|+.|.+.+|...........-+..|+.|+|++|..... .+
T Consensus 197 ~~lK~L~l~~CGls-----------~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~ 265 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLS-----------WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGY 265 (505)
T ss_pred hhhheEEeccCCCC-----------HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccc
Confidence 46666777666432 355555566778888888888853222122223567888888888875543 45
Q ss_pred CCCCCCCcceeeccccccceEeCccccCCCcCcccccccCCCCCCCCCccCccCCccceeeecccccccccccCCCcccc
Q 002044 815 ALGILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITI 894 (976)
Q Consensus 815 ~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~ 894 (976)
..+.||.|..|.++.|. +..+.. +.... ......||+|+.|.+.. .+..+|..... +..
T Consensus 266 ~~~~l~~L~~Lnls~tg-i~si~~--~d~~s----------------~~kt~~f~kL~~L~i~~-N~I~~w~sl~~-l~~ 324 (505)
T KOG3207|consen 266 KVGTLPGLNQLNLSSTG-IASIAE--PDVES----------------LDKTHTFPKLEYLNISE-NNIRDWRSLNH-LRT 324 (505)
T ss_pred ccccccchhhhhccccC-cchhcC--CCccc----------------hhhhcccccceeeeccc-Cccccccccch-hhc
Confidence 67888888888888764 333211 11100 00123588888888875 33444654332 556
Q ss_pred CCCcceEeeecCC
Q 002044 895 MPQLSSMKISYCS 907 (976)
Q Consensus 895 l~~L~~L~l~~c~ 907 (976)
+++|+.|.+..++
T Consensus 325 l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 325 LENLKHLRITLNY 337 (505)
T ss_pred cchhhhhhccccc
Confidence 7777777766544
No 68
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=3.4e-07 Score=96.75 Aligned_cols=186 Identities=19% Similarity=0.154 Sum_probs=114.7
Q ss_pred CCCCCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEeecCCCCCCccccc-ccccccEEEEeCCCCC-
Q 002044 733 LDKKKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITGFKGRTLMLSWIV-SLNKLKKLRLLFCDKC- 810 (976)
Q Consensus 733 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~- 810 (976)
.+.+.+++.|+|+.+-.. +...++....++|+|+.|+|+.|.......+-.. .++.|+.|.|+.|...
T Consensus 142 ~k~~~~v~~LdLS~NL~~----------nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~ 211 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFH----------NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSW 211 (505)
T ss_pred hhhCCcceeecchhhhHH----------hHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCH
Confidence 445678888888876532 4567777788899999999999887654112111 6789999999999643
Q ss_pred CCCC-CCCCCCCcceeeccccccceEeCccccCCCcCcccccccCCCCCCCCCccCccCCccceeeecccccccccccCC
Q 002044 811 EVMP-ALGILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGK 889 (976)
Q Consensus 811 ~~l~-~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~ 889 (976)
.++. .+..+|+|+.|+|..|..+.......--...+..+++++|.+...........||.|+.|.+..+. ...+...+
T Consensus 212 k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d 290 (505)
T KOG3207|consen 212 KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPD 290 (505)
T ss_pred HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCC
Confidence 2222 255789999999998853322222222233456667777776665554445567777777776532 22222111
Q ss_pred C----ccccCCCcceEeeecCCCCCCCCc--CCCCCCCCCeEEEccC
Q 002044 890 E----DITIMPQLSSMKISYCSKLNSLPD--QLLQSTTLEELEIIRC 930 (976)
Q Consensus 890 ~----~~~~l~~L~~L~l~~c~~L~~lp~--~l~~l~~L~~L~l~~c 930 (976)
. ....||+|+.|++..++ +...++ .+..+++|+.|.+..+
T Consensus 291 ~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 291 VESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred ccchhhhcccccceeeecccCc-cccccccchhhccchhhhhhcccc
Confidence 1 13467888888888776 444442 2334456666665554
No 69
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.20 E-value=2.5e-05 Score=90.44 Aligned_cols=187 Identities=15% Similarity=0.156 Sum_probs=107.8
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhccc---cccee-ehHHHHHH-----
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNF---EKRMW-NCESIIEA----- 244 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~w-v~~~~~~~----- 244 (976)
.+++|.+..++.|..++... .-...+.++|..|+||||+|+.+.+........ .|... .|..+...
T Consensus 16 ddIIGQe~vv~~L~~ai~~~-----rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEG-----RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 57999999999999998742 234678999999999999999987731111111 00000 00000000
Q ss_pred --Hh-CCCCCcccHHHHHHHHHHH-HcCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCch-hhhhc-cCCc
Q 002044 245 --LE-GFAPNLGELNSLLLRIDAF-IARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKE-TVARM-MEST 318 (976)
Q Consensus 245 --l~-~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~-~~~~ 318 (976)
+. .......++.++....... ..+++-++|+|++..-.......+...+......+++|++|.+. .+... .+..
T Consensus 91 lEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC 170 (709)
T PRK08691 91 LEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRC 170 (709)
T ss_pred EEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHH
Confidence 00 0001111222222221111 23566799999996544444556666665544556777777543 22221 1334
Q ss_pred ceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHH
Q 002044 319 DVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAA 369 (976)
Q Consensus 319 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 369 (976)
..+.+.+++.++..+.+.+.+-..+.... .+....|++.++|.+--+
T Consensus 171 ~~f~f~~Ls~eeI~~~L~~Il~kEgi~id----~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 171 LQFVLRNMTAQQVADHLAHVLDSEKIAYE----PPALQLLGRAAAGSMRDA 217 (709)
T ss_pred hhhhcCCCCHHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHhCCCHHHH
Confidence 67888999999999999887643332222 345566999999988543
No 70
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.20 E-value=2.4e-05 Score=91.03 Aligned_cols=188 Identities=15% Similarity=0.159 Sum_probs=111.5
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhccc---cc-ceeehHHHHHH-----
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNF---EK-RMWNCESIIEA----- 244 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~-~~wv~~~~~~~----- 244 (976)
.++||.+..++.|...+... .-...+.++|..|+||||+|+.+++...-...+ .| .+..|..+...
T Consensus 16 ~divGQe~vv~~L~~~l~~~-----rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ 90 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLG-----RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDL 90 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCc
Confidence 57999999999999888732 123567899999999999999998732111111 11 11111111100
Q ss_pred --HhCC-CCCcccHHHHHHHHHHH-HcCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCc-hhhhhc-cCCc
Q 002044 245 --LEGF-APNLGELNSLLLRIDAF-IARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRK-ETVARM-MEST 318 (976)
Q Consensus 245 --l~~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~-~~~~ 318 (976)
+.+. .....++.++...+... ..+++-++|+|++..-....++.+...+-......++|++|.+ ..+... ....
T Consensus 91 ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC 170 (647)
T PRK07994 91 IEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 (647)
T ss_pred eeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhh
Confidence 0000 01112222333222211 2456679999999765556677777777665555666666554 334322 2336
Q ss_pred ceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHH
Q 002044 319 DVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAK 370 (976)
Q Consensus 319 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 370 (976)
..|.+++++.++..+.+.+.+-..+.... ......|++.++|.+--+.
T Consensus 171 ~~~~f~~Ls~~ei~~~L~~il~~e~i~~e----~~aL~~Ia~~s~Gs~R~Al 218 (647)
T PRK07994 171 LQFHLKALDVEQIRQQLEHILQAEQIPFE----PRALQLLARAADGSMRDAL 218 (647)
T ss_pred eEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 78999999999999999876532221122 3444569999999876433
No 71
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.20 E-value=3.3e-05 Score=80.08 Aligned_cols=153 Identities=18% Similarity=0.070 Sum_probs=86.1
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCC
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDDVW 279 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 279 (976)
..+.+.|+|..|+|||+||+.+++.. ..... ...+++..-... .+ ... ...-+||+||+.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~-~~~~~-~~~~i~~~~~~~----------------~~-~~~-~~~~~liiDdi~ 100 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADA-SYGGR-NARYLDAASPLL----------------AF-DFD-PEAELYAVDDVE 100 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH-HhCCC-cEEEEehHHhHH----------------HH-hhc-ccCCEEEEeChh
Confidence 34578899999999999999999832 12222 234443311110 00 111 234578999995
Q ss_pred CCCccCcHhHHHhhcCC-CCCc-EEEEEcCchhhhh--------ccCCcceEecCCCCHHHHHHHHHHHhcCCCCCCcch
Q 002044 280 TDDYSKWEPFRRCLING-HRES-RILVTTRKETVAR--------MMESTDVIFIKELSEQECWALFKRFACFGRSLSECE 349 (976)
Q Consensus 280 ~~~~~~~~~l~~~l~~~-~~gs-~iivTtR~~~v~~--------~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~ 349 (976)
.-+...-+.+...+... ..+. .||+|++...... .+.....+++.++++++-.+++.+.+-..+ ...
T Consensus 101 ~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~-v~l-- 177 (227)
T PRK08903 101 RLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERG-LQL-- 177 (227)
T ss_pred hcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC-CCC--
Confidence 43222223344444321 2333 4667766433221 122246899999999887777765442212 111
Q ss_pred hHHHHHHHHHhhcCCCchHHHHHhhhh
Q 002044 350 QLEEIGKKIVGKCKGLPLAAKTIGSLL 376 (976)
Q Consensus 350 ~~~~~~~~i~~~c~GlPLai~~~~~~l 376 (976)
-++..+.+++.+.|.+..+..+-..+
T Consensus 178 -~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 178 -ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred -CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 13455668888999988877666544
No 72
>PRK09087 hypothetical protein; Validated
Probab=98.20 E-value=1.7e-05 Score=81.17 Aligned_cols=140 Identities=15% Similarity=0.104 Sum_probs=83.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCCC
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDDVWT 280 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 280 (976)
.+.+.|+|..|+|||+|++.+++.. . ..|++.. .....+...+.+ -+|++||+..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~--~-----~~~i~~~----------------~~~~~~~~~~~~--~~l~iDDi~~ 98 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS--D-----ALLIHPN----------------EIGSDAANAAAE--GPVLIEDIDA 98 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc--C-----CEEecHH----------------HcchHHHHhhhc--CeEEEECCCC
Confidence 4578999999999999999988732 1 2233321 000001111111 3788899943
Q ss_pred C--CccCcHhHHHhhcCCCCCcEEEEEcCc---------hhhhhccCCcceEecCCCCHHHHHHHHHHHhcCCCCCCcch
Q 002044 281 D--DYSKWEPFRRCLINGHRESRILVTTRK---------ETVARMMESTDVIFIKELSEQECWALFKRFACFGRSLSECE 349 (976)
Q Consensus 281 ~--~~~~~~~l~~~l~~~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~ 349 (976)
. +...+-.+...+. ..|..||+|++. .++...+....++++++++.++-.+++.+.+-...- ..+
T Consensus 99 ~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~-~l~- 174 (226)
T PRK09087 99 GGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQL-YVD- 174 (226)
T ss_pred CCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCC-CCC-
Confidence 2 1122222222222 235679999874 233334455689999999999999999988743221 122
Q ss_pred hHHHHHHHHHhhcCCCchHHHH
Q 002044 350 QLEEIGKKIVGKCKGLPLAAKT 371 (976)
Q Consensus 350 ~~~~~~~~i~~~c~GlPLai~~ 371 (976)
+++.+-|++.+.|..-++..
T Consensus 175 --~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 175 --PHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred --HHHHHHHHHHhhhhHHHHHH
Confidence 44555577777776665553
No 73
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.18 E-value=1.6e-07 Score=102.20 Aligned_cols=126 Identities=26% Similarity=0.376 Sum_probs=72.6
Q ss_pred cccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccc
Q 002044 544 PVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEK 621 (976)
Q Consensus 544 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~ 621 (976)
|..+.++..|..|+++.|.++. ++.-+.. --|++|.++ ++.+..+|+.|+.+.+|..||. +++..
T Consensus 114 p~~i~~L~~lt~l~ls~NqlS~------lp~~lC~-lpLkvli~s------NNkl~~lp~~ig~~~tl~~ld~s~nei~s 180 (722)
T KOG0532|consen 114 PEAICNLEALTFLDLSSNQLSH------LPDGLCD-LPLKVLIVS------NNKLTSLPEEIGLLPTLAHLDVSKNEIQS 180 (722)
T ss_pred chhhhhhhHHHHhhhccchhhc------CChhhhc-CcceeEEEe------cCccccCCcccccchhHHHhhhhhhhhhh
Confidence 4455555666666666555322 1111221 235666666 5555566666666666666666 45666
Q ss_pred cCccccccCCccEEecCCCCCCcccchhhcccCCCcEEEecccccccCcccccCCCCCCcCCc
Q 002044 622 LPETCCELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLEYMPKGIERLTSLRTLSE 684 (976)
Q Consensus 622 lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~ 684 (976)
+|..++.|.+|+.|+++.|. +..+|..++. -.|..||++||++..+|-.|.+|+.||+|.+
T Consensus 181 lpsql~~l~slr~l~vrRn~-l~~lp~El~~-LpLi~lDfScNkis~iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 181 LPSQLGYLTSLRDLNVRRNH-LEDLPEELCS-LPLIRLDFSCNKISYLPVDFRKMRHLQVLQL 241 (722)
T ss_pred chHHhhhHHHHHHHHHhhhh-hhhCCHHHhC-CceeeeecccCceeecchhhhhhhhheeeee
Confidence 66666666666666666665 5566666653 3456666666666666666666666666543
No 74
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.18 E-value=1.9e-05 Score=87.95 Aligned_cols=180 Identities=14% Similarity=0.153 Sum_probs=100.9
Q ss_pred cCCccccchhHHHHHHHHHhccccc-------CCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHH
Q 002044 172 DLSEVRGRVEEKNALKSKLLCKSSE-------QTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEA 244 (976)
Q Consensus 172 ~~~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 244 (976)
...++.|+++.++++.+.+..+-.. +-...+-|.++|++|+|||++|+.+++ .....|-.+. ...+...
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~~~v~--~~~l~~~ 195 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATFIRVV--GSELVRK 195 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCEEecc--hHHHHHH
Confidence 3457899999999999887532110 012345689999999999999999998 3444442211 1122211
Q ss_pred HhCCCCCcccHHHHHHHHHHHH-cCCceEEEEcCCCCC-----------CccCcHhHHHhh---cC--CCCCcEEEEEcC
Q 002044 245 LEGFAPNLGELNSLLLRIDAFI-ARKKFLLILDDVWTD-----------DYSKWEPFRRCL---IN--GHRESRILVTTR 307 (976)
Q Consensus 245 l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-----------~~~~~~~l~~~l---~~--~~~gs~iivTtR 307 (976)
..+ ........+.+.. ...+.+|++|+++.- +......+...+ .. ...+.+||.||+
T Consensus 196 ~~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn 269 (364)
T TIGR01242 196 YIG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATN 269 (364)
T ss_pred hhh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecC
Confidence 111 1112222222222 346789999998531 001111222222 21 134567888887
Q ss_pred chhh-----hhccCCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCc
Q 002044 308 KETV-----ARMMESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLP 366 (976)
Q Consensus 308 ~~~v-----~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 366 (976)
.... .........+.+...+.++..++|..++..... ...-.+ ..+++.+.|..
T Consensus 270 ~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l-~~~~~~----~~la~~t~g~s 328 (364)
T TIGR01242 270 RPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL-AEDVDL----EAIAKMTEGAS 328 (364)
T ss_pred ChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC-CccCCH----HHHHHHcCCCC
Confidence 5432 111122457899999999999999987643221 111233 34777777654
No 75
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.16 E-value=5.4e-06 Score=77.67 Aligned_cols=105 Identities=20% Similarity=0.221 Sum_probs=63.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchhcc-----cccceeehH-----------HHHHHHhCCCCCcccHHHHHHHHH
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVISN-----FEKRMWNCE-----------SIIEALEGFAPNLGELNSLLLRID 263 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~-----------~~~~~l~~~~~~~~~~~~~~~~l~ 263 (976)
+.+++.|+|.+|+|||++++.+.++ .... -..++|+.+ .+.+.+........+..++...+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHH
Confidence 4578999999999999999999984 2221 233557765 444444444333355677778888
Q ss_pred HHHcCCce-EEEEcCCCCC-CccCcHhHHHhhcCCCCCcEEEEEcCc
Q 002044 264 AFIARKKF-LLILDDVWTD-DYSKWEPFRRCLINGHRESRILVTTRK 308 (976)
Q Consensus 264 ~~l~~k~~-LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~ 308 (976)
+.+...+. +||+|++..- ....++.+.. +.+ ..+.+||+..+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~-l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRS-LLN-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHH-HTC-SCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHH-HHh-CCCCeEEEEECh
Confidence 88876655 9999999433 2233333433 223 566778877765
No 76
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=2e-05 Score=89.48 Aligned_cols=206 Identities=19% Similarity=0.191 Sum_probs=113.0
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhc--cc-cccee-ehHHHHHH----H
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVIS--NF-EKRMW-NCESIIEA----L 245 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~f-~~~~w-v~~~~~~~----l 245 (976)
.+++|.+...+.+...+... .-...+.++|++|+||||+|+.+++...... .+ +|... .+..+... +
T Consensus 14 ~divGq~~i~~~L~~~i~~~-----~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKN-----SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 57999998888888877632 1235688999999999999999987321110 01 00000 00011000 0
Q ss_pred hC-CCCCcccHHHHHHHHHHHH-----cCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCc-hhhhhcc-CC
Q 002044 246 EG-FAPNLGELNSLLLRIDAFI-----ARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRK-ETVARMM-ES 317 (976)
Q Consensus 246 ~~-~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~-~~ 317 (976)
.. ........+.. +.+.+.. .+++-++|+|++..-.....+.+...+........+|++|.+ ..+...+ ..
T Consensus 89 ~el~aa~~~gid~i-R~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR 167 (472)
T PRK14962 89 IELDAASNRGIDEI-RKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISR 167 (472)
T ss_pred EEEeCcccCCHHHH-HHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcC
Confidence 00 00011112222 2233322 245669999999543334455666666554444555544443 3343322 34
Q ss_pred cceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCC-CchHHHHHhhhhccC---CCHHHHHHHH
Q 002044 318 TDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKG-LPLAAKTIGSLLRFK---RTREEWQSIL 389 (976)
Q Consensus 318 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~~~~l~~~---~~~~~w~~~l 389 (976)
...+.+.+++.++....+...+...+.... .+....|++.++| ++.|+..+..+.... -+.+....++
T Consensus 168 ~~vv~f~~l~~~el~~~L~~i~~~egi~i~----~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l 239 (472)
T PRK14962 168 CQVIEFRNISDELIIKRLQEVAEAEGIEID----REALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEAL 239 (472)
T ss_pred cEEEEECCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 568999999999999988887643222222 3345558887765 567777776543321 2445555444
No 77
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=3.5e-05 Score=88.33 Aligned_cols=192 Identities=17% Similarity=0.208 Sum_probs=109.8
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhC-CC---
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEG-FA--- 249 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~-~~--- 249 (976)
.+++|++..++.+.+.+... .-.+.+.++|+.|+||||+|+.+++...-........+-.+.....+.. ..
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~-----rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~Di 90 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNN-----KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDI 90 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCce
Confidence 57899999999999988642 2346788999999999999999987311101100001101111111111 00
Q ss_pred --------CCcccHHHHHHHHHHH-HcCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcC-chhhhhc-cCCc
Q 002044 250 --------PNLGELNSLLLRIDAF-IARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTR-KETVARM-MEST 318 (976)
Q Consensus 250 --------~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR-~~~v~~~-~~~~ 318 (976)
....++..+...+... ..+++-++|+|++..-....+..+...+......+.+|++|. ...+... ....
T Consensus 91 ieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRc 170 (605)
T PRK05896 91 VELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRC 170 (605)
T ss_pred EEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhh
Confidence 1111222222222211 123444799999965444566777777765555566665553 3334322 2345
Q ss_pred ceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCc-hHHHHHhh
Q 002044 319 DVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLP-LAAKTIGS 374 (976)
Q Consensus 319 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~~ 374 (976)
..+++.+++.++....+...+...+.... .+.+..+++.++|.+ .|+..+-.
T Consensus 171 q~ieF~~Ls~~eL~~~L~~il~kegi~Is----~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 171 QRYNFKKLNNSELQELLKSIAKKEKIKIE----DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred hhcccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 78999999999999888876633221122 334566899999965 45554444
No 78
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.14 E-value=6.4e-05 Score=77.92 Aligned_cols=150 Identities=13% Similarity=0.092 Sum_probs=86.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCCC
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDDVWT 280 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 280 (976)
.+.+.|+|+.|+|||+|++.+++. ....-..+.|+.++.... ....+.+.+.+ --+|++||+..
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~-------------~~~~~~~~~~~-~dlliiDdi~~ 108 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW-------------FVPEVLEGMEQ-LSLVCIDNIEC 108 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh-------------hhHHHHHHhhh-CCEEEEeChhh
Confidence 357899999999999999999883 333333455655532110 01112222222 24889999954
Q ss_pred CC-ccCcHh-HHHhhcCC-CCC-cEEEEEcCch---------hhhhccCCcceEecCCCCHHHHHHHHHHHhcCCCCCCc
Q 002044 281 DD-YSKWEP-FRRCLING-HRE-SRILVTTRKE---------TVARMMESTDVIFIKELSEQECWALFKRFACFGRSLSE 347 (976)
Q Consensus 281 ~~-~~~~~~-l~~~l~~~-~~g-s~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 347 (976)
.. ...|+. +...+... ..| .++|+||+.. ++...+....+++++++++++-.+++.+.+...+ ...
T Consensus 109 ~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~-~~l 187 (235)
T PRK08084 109 IAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRG-FEL 187 (235)
T ss_pred hcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcC-CCC
Confidence 21 133443 22222211 123 3799999854 2333344567999999999999999987663322 112
Q ss_pred chhHHHHHHHHHhhcCCCchHHH
Q 002044 348 CEQLEEIGKKIVGKCKGLPLAAK 370 (976)
Q Consensus 348 ~~~~~~~~~~i~~~c~GlPLai~ 370 (976)
+ +++..-|++.+.|..-++.
T Consensus 188 ~---~~v~~~L~~~~~~d~r~l~ 207 (235)
T PRK08084 188 P---EDVGRFLLKRLDREMRTLF 207 (235)
T ss_pred C---HHHHHHHHHhhcCCHHHHH
Confidence 2 4455557777776554443
No 79
>PRK05642 DNA replication initiation factor; Validated
Probab=98.13 E-value=7.3e-05 Score=77.36 Aligned_cols=152 Identities=18% Similarity=0.157 Sum_probs=89.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCCC
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDDVWT 280 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 280 (976)
...+.|+|..|+|||.|++.+++ .....-..++|++..-+.. . ...+.+.+.+-. +||+||+..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~~~~~~~~---~----------~~~~~~~~~~~d-~LiiDDi~~ 108 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYLPLAELLD---R----------GPELLDNLEQYE-LVCLDDLDV 108 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEeeHHHHHh---h----------hHHHHHhhhhCC-EEEEechhh
Confidence 35789999999999999999987 3333334566776522111 0 122333333333 678899953
Q ss_pred CC-ccCcHh-HHHhhcC-CCCCcEEEEEcCchh---------hhhccCCcceEecCCCCHHHHHHHHHHHhcCCCCCCcc
Q 002044 281 DD-YSKWEP-FRRCLIN-GHRESRILVTTRKET---------VARMMESTDVIFIKELSEQECWALFKRFACFGRSLSEC 348 (976)
Q Consensus 281 ~~-~~~~~~-l~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~ 348 (976)
.. ...|+. +...+.. ...|.+||+|++... +...+....++++++++.++-.+.+..++.... ...+
T Consensus 109 ~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~-~~l~ 187 (234)
T PRK05642 109 IAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG-LHLT 187 (234)
T ss_pred hcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC-CCCC
Confidence 21 234443 3333322 134567999988532 112223346899999999999999986654322 1122
Q ss_pred hhHHHHHHHHHhhcCCCchHHHHH
Q 002044 349 EQLEEIGKKIVGKCKGLPLAAKTI 372 (976)
Q Consensus 349 ~~~~~~~~~i~~~c~GlPLai~~~ 372 (976)
+++..-|++++.|..-.+..+
T Consensus 188 ---~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 188 ---DEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred ---HHHHHHHHHhcCCCHHHHHHH
Confidence 455566777777765544433
No 80
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=3.1e-05 Score=90.02 Aligned_cols=185 Identities=12% Similarity=0.114 Sum_probs=108.7
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcc--------cccceeehHHHHHHH
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISN--------FEKRMWNCESIIEAL 245 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--------f~~~~wv~~~~~~~l 245 (976)
.+++|-+..++.|.+++... .-...+.++|..|+||||+|+.+++...-... -.|...-.+..+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~-----rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~-- 88 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQ-----RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDID-- 88 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHH--
Confidence 57899999889999988742 23467889999999999999998652110000 0111111111110
Q ss_pred hCCCC--------CcccHHHHHHHHHHHH-----cCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCc-hhh
Q 002044 246 EGFAP--------NLGELNSLLLRIDAFI-----ARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRK-ETV 311 (976)
Q Consensus 246 ~~~~~--------~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v 311 (976)
.+... ....+++..+ +.+.. .++.-++|||+|..-....++.+...+.......++|++|.+ ..+
T Consensus 89 ~g~h~D~~eldaas~~~Vd~iRe-li~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 89 SGRFVDYTELDAASNRGVDEVQQ-LLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKV 167 (618)
T ss_pred cCCCCceeecCcccccCHHHHHH-HHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhh
Confidence 01100 0112222222 22222 234558999999766666677777777665555666666543 333
Q ss_pred hhc-cCCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHH
Q 002044 312 ARM-MESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAK 370 (976)
Q Consensus 312 ~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 370 (976)
... ......+++++++.++..+.+.+.+...+.... .+....|++.++|.+--+.
T Consensus 168 l~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie----~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 168 PVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE----PQALRLLARAARGSMRDAL 223 (618)
T ss_pred hHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 322 244678999999999999999877643322222 3445668889998775443
No 81
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.13 E-value=2.1e-06 Score=83.14 Aligned_cols=120 Identities=28% Similarity=0.298 Sum_probs=50.3
Q ss_pred cCceeEEEEEccCCCCCccccc-ccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccc
Q 002044 527 QEKLRHLMLVLGYKNSFPVSIF-YARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGI 605 (976)
Q Consensus 527 ~~~~r~l~~~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i 605 (976)
+.+.|.+.+.++.+..+. .+. .+.+|+.|++++|.+..... +..++.|++|+++ ++.+..+++.+
T Consensus 18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~-------l~~L~~L~~L~L~------~N~I~~i~~~l 83 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEG-------LPGLPRLKTLDLS------NNRISSISEGL 83 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT-----------TT--EEE--------SS---S-CHHH
T ss_pred cccccccccccccccccc-chhhhhcCCCEEECCCCCCccccC-------ccChhhhhhcccC------CCCCCccccch
Confidence 346788888888877643 343 57899999999998754322 6778999999999 78888887655
Q ss_pred -cCCCccceecC--ccccccC--ccccccCCccEEecCCCCCCcccch----hhcccCCCcEEEe
Q 002044 606 -KKLRHLRYLKL--YLVEKLP--ETCCELLNLQTLNMCGSPGLKRLPQ----GIGKLINLRHLMF 661 (976)
Q Consensus 606 -~~L~~Lr~L~L--~~~~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~----~i~~l~~L~~L~l 661 (976)
..+++|+.|++ +.+..+. ..+..+++|++|++.+|+ +...+. .+..+++|+.||-
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETT
T ss_pred HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCC
Confidence 46899999999 5565554 356789999999999998 655543 3788999999985
No 82
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=3.4e-05 Score=86.71 Aligned_cols=188 Identities=12% Similarity=0.146 Sum_probs=109.3
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccc---------cceeehHHHHHH
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFE---------KRMWNCESIIEA 244 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~---------~~~wv~~~~~~~ 244 (976)
.+++|.+..++.|..++... .-...+.++|+.|+||||+|+.+++...-...+. ..+-.| ..-..
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~-----~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c-~~c~~ 89 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGEC-ESCRD 89 (397)
T ss_pred hhccChHHHHHHHHHHHHhC-----CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCC-HHHHH
Confidence 57899999999888888632 1235688999999999999999877321111010 000000 00000
Q ss_pred H-hCCCC--------CcccHHHHHHHHHHHH-----cCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEc-Cch
Q 002044 245 L-EGFAP--------NLGELNSLLLRIDAFI-----ARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTT-RKE 309 (976)
Q Consensus 245 l-~~~~~--------~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~ 309 (976)
+ .+... .....+++. .+.+.+ .+++-++|+|++..-....++.+...+....+.+.+|++| +..
T Consensus 90 ~~~~~~~n~~~~~~~~~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~ 168 (397)
T PRK14955 90 FDAGTSLNISEFDAASNNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELH 168 (397)
T ss_pred HhcCCCCCeEeecccccCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 0 01000 111123322 233333 2455688999996544456777888877665666766655 434
Q ss_pred hhhhcc-CCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCch-HHHHH
Q 002044 310 TVARMM-ESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPL-AAKTI 372 (976)
Q Consensus 310 ~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 372 (976)
.+...+ ....++++++++.++..+.+...+-..+.... .+.+..|++.++|.+- |+..+
T Consensus 169 kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~----~~al~~l~~~s~g~lr~a~~~L 229 (397)
T PRK14955 169 KIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD----ADALQLIGRKAQGSMRDAQSIL 229 (397)
T ss_pred HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 443322 22467899999999998888776532221122 4455669999999775 44433
No 83
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=3.4e-05 Score=87.06 Aligned_cols=186 Identities=17% Similarity=0.161 Sum_probs=108.8
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcc--c-ccc-eeehHHHHHHHh---
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISN--F-EKR-MWNCESIIEALE--- 246 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--f-~~~-~wv~~~~~~~l~--- 246 (976)
.+++|.+..++.+...+... .-.+.+.++|+.|+||||+|+.+++....... . .|. +-.|..+.....
T Consensus 13 ~dliGQe~vv~~L~~a~~~~-----ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLN-----KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 57899999888888887632 12457899999999999999988762100000 0 010 001111111000
Q ss_pred ----C-CCCCcccHHHHHHHHHHH-HcCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcC-chhhhhcc-CCc
Q 002044 247 ----G-FAPNLGELNSLLLRIDAF-IARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTR-KETVARMM-EST 318 (976)
Q Consensus 247 ----~-~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR-~~~v~~~~-~~~ 318 (976)
. ......++.++....... ..+++-++|+|++..-....++.+...+....+.+++|++|. ...+...+ ...
T Consensus 88 ~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc 167 (491)
T PRK14964 88 IEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRC 167 (491)
T ss_pred EEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhh
Confidence 0 011111222222222111 234566899999965544566777777776666677776664 33443322 346
Q ss_pred ceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchH
Q 002044 319 DVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLA 368 (976)
Q Consensus 319 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 368 (976)
..+.+++++.++..+.+.+.+...+.... .+....|++.++|.+-.
T Consensus 168 ~~~~f~~l~~~el~~~L~~ia~~Egi~i~----~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 168 QRFDLQKIPTDKLVEHLVDIAKKENIEHD----EESLKLIAENSSGSMRN 213 (491)
T ss_pred eeeecccccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 78999999999999999887744332222 33445689999887753
No 84
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.11 E-value=1.4e-05 Score=82.49 Aligned_cols=147 Identities=17% Similarity=0.224 Sum_probs=92.5
Q ss_pred cccCCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCC
Q 002044 170 LIDLSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFA 249 (976)
Q Consensus 170 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~ 249 (976)
++...+++|.+.-+..+++ .+.+..+.+||++|+||||||+.+.+...-.. ..||.. ....
T Consensus 140 yvGQ~hlv~q~gllrs~ie---------q~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvel------SAt~ 200 (554)
T KOG2028|consen 140 YVGQSHLVGQDGLLRSLIE---------QNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVEL------SATN 200 (554)
T ss_pred hcchhhhcCcchHHHHHHH---------cCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEE------eccc
Confidence 3444556666555554443 45788899999999999999999998432221 223321 1222
Q ss_pred CCcccHHHHHHHHHHH--HcCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCchh--h---hhccCCcceEe
Q 002044 250 PNLGELNSLLLRIDAF--IARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKET--V---ARMMESTDVIF 322 (976)
Q Consensus 250 ~~~~~~~~~~~~l~~~--l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~--v---~~~~~~~~~~~ 322 (976)
....++....+.-+.. +.++|.+|++|.|..-+..+-+. .||.-..|+-++|-...++ . +..+....++.
T Consensus 201 a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~Vfv 277 (554)
T KOG2028|consen 201 AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFV 277 (554)
T ss_pred cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeE
Confidence 3333444444444433 46789999999996544333332 3666677887777544332 1 12234567999
Q ss_pred cCCCCHHHHHHHHHHH
Q 002044 323 IKELSEQECWALFKRF 338 (976)
Q Consensus 323 l~~L~~~~~~~Lf~~~ 338 (976)
|++|+.++-..++.+.
T Consensus 278 LekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 278 LEKLPVNAVVTILMRA 293 (554)
T ss_pred eccCCHHHHHHHHHHH
Confidence 9999999999888774
No 85
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.11 E-value=4.9e-05 Score=84.93 Aligned_cols=188 Identities=14% Similarity=0.113 Sum_probs=108.7
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccch--hccc-ccceeehHHHHHHHhCCCC
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDV--ISNF-EKRMWNCESIIEALEGFAP 250 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~f-~~~~wv~~~~~~~l~~~~~ 250 (976)
.+++|.+..++.+.+++... .-...+.++|.+|+||||+|+.+.+...- ...+ .+..+.+...+. .+...
T Consensus 14 ~~iig~~~~~~~l~~~~~~~-----~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~--~~~~~ 86 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG-----RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEIN--SGSSL 86 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh--cCCCC
Confidence 57899999999999988642 23457889999999999999888763110 0111 111111111110 01100
Q ss_pred --------Cccc---HHHHHHHHHHH-HcCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCchh-hhhc-cC
Q 002044 251 --------NLGE---LNSLLLRIDAF-IARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKET-VARM-ME 316 (976)
Q Consensus 251 --------~~~~---~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~-~~ 316 (976)
.... ..++...+... ..+++-++|+|++..-....+..+...+......+.+|++|.+.. +... ..
T Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~s 166 (355)
T TIGR02397 87 DVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILS 166 (355)
T ss_pred CEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHh
Confidence 0111 22222222111 224556899999854333445667777755455667667765433 2222 23
Q ss_pred CcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHH
Q 002044 317 STDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTI 372 (976)
Q Consensus 317 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 372 (976)
....+++.+++.++..+.+...+-..+.... .+.+..+++.++|.|..+...
T Consensus 167 r~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~----~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 167 RCQRFDFKRIPLEDIVERLKKILDKEGIKIE----DEALELIARAADGSLRDALSL 218 (355)
T ss_pred heeEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCChHHHHHH
Confidence 3567889999999999888876643222111 355667899999988655444
No 86
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.06 E-value=4.1e-06 Score=83.91 Aligned_cols=47 Identities=28% Similarity=0.367 Sum_probs=32.2
Q ss_pred ccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcc
Q 002044 175 EVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
.|+||+++++++...|. ... ....+.+.|+|.+|+|||+|+++++..
T Consensus 1 ~fvgR~~e~~~l~~~l~-~~~--~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLD-AAQ--SGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTG-GTS--S-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-HHH--cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999996 222 346799999999999999999999873
No 87
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.4e-07 Score=94.45 Aligned_cols=118 Identities=16% Similarity=0.101 Sum_probs=78.7
Q ss_pred HHhccCCCCCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEeecCCCCCCcccc----cccccccEEE
Q 002044 728 AKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITGFKGRTLMLSWI----VSLNKLKKLR 803 (976)
Q Consensus 728 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~----~~l~~L~~L~ 803 (976)
+....+.+|+.|..|+++||.... .........+ -++|+.|+|+||.-.-. .+-+ ..+++|..|+
T Consensus 251 ~~~ll~~scs~L~~LNlsWc~l~~--------~~Vtv~V~hi--se~l~~LNlsG~rrnl~-~sh~~tL~~rcp~l~~LD 319 (419)
T KOG2120|consen 251 ALQLLLSSCSRLDELNLSWCFLFT--------EKVTVAVAHI--SETLTQLNLSGYRRNLQ-KSHLSTLVRRCPNLVHLD 319 (419)
T ss_pred HHHHHHHhhhhHhhcCchHhhccc--------hhhhHHHhhh--chhhhhhhhhhhHhhhh-hhHHHHHHHhCCceeeec
Confidence 344557788999999999997541 1111111122 35899999999864322 2222 2789999999
Q ss_pred EeCCCCCCC--CCCCCCCCCcceeeccccccceEeCccccCCCcCcccccccCCCCCCCCCccCccCCccceeeecccc
Q 002044 804 LLFCDKCEV--MPALGILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLD 880 (976)
Q Consensus 804 L~~~~~~~~--l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~ 880 (976)
|++|..++. +..+-+++.|++|.++.|+.+ +|..+... ...|.|.+|++.+|-
T Consensus 320 LSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l----------------------~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 320 LSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLEL----------------------NSKPSLVYLDVFGCV 374 (419)
T ss_pred cccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeee----------------------ccCcceEEEEecccc
Confidence 999986654 334678999999999999854 23322221 246777777777764
No 88
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=0.00015 Score=79.21 Aligned_cols=187 Identities=16% Similarity=0.172 Sum_probs=111.7
Q ss_pred CCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcc----cccceee----hHHHHHH
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISN----FEKRMWN----CESIIEA 244 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv----~~~~~~~ 244 (976)
...++|-+...+.+...+... .-...+.|+|..|+||||+|..+++. +-.+ +...... .......
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~g-----rl~ha~L~~G~~G~GKttlA~~lA~~--Llc~~~~~~~~~~~~~~~~~c~~c~~ 94 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREG-----KLHHALLFEGPEGIGKATLAFHLANH--ILSHPDPAEAPETLADPDPASPVWRQ 94 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcC-----CCCeeEeeECCCCCCHHHHHHHHHHH--HcCCCccccCccccCCCCCCCHHHHH
Confidence 457899999999999998743 23457899999999999999988763 2110 1100000 0011111
Q ss_pred Hh-CCC-----------------CCcccHHHHHHHHHHHHc-----CCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcE
Q 002044 245 LE-GFA-----------------PNLGELNSLLLRIDAFIA-----RKKFLLILDDVWTDDYSKWEPFRRCLINGHRESR 301 (976)
Q Consensus 245 l~-~~~-----------------~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 301 (976)
+. +.. ...-.+++ +..+.+++. +++-++|+|++..-+....+.+...+........
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~ 173 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARAL 173 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCce
Confidence 11 000 00111233 334444443 4567999999976555566667777665444445
Q ss_pred E-EEEcCchhhhhcc-CCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHHh
Q 002044 302 I-LVTTRKETVARMM-ESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTIG 373 (976)
Q Consensus 302 i-ivTtR~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 373 (976)
+ ++|++...+...+ .....+.+.+++.++..+++.+... .. . ...+....+++.++|.|.....+.
T Consensus 174 fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~--~~-~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 174 FILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGS--SQ-G---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhc--cc-C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4 4554444343222 2356899999999999999987431 11 1 113345679999999998665443
No 89
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=0.00016 Score=79.50 Aligned_cols=187 Identities=11% Similarity=0.068 Sum_probs=112.6
Q ss_pred CCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhccc--c------cceeehH--HHH
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNF--E------KRMWNCE--SII 242 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~------~~~wv~~--~~~ 242 (976)
..+++|.+...+.+.+.+.... -...+.++|+.|+||+|+|..+++..--.... . ....++. ..-
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 3579999999999999887422 34578999999999999998876521000000 0 0000000 001
Q ss_pred HHHh-CCCC-----------------CcccHHHHHHHHHHHHc-----CCceEEEEcCCCCCCccCcHhHHHhhcCCCCC
Q 002044 243 EALE-GFAP-----------------NLGELNSLLLRIDAFIA-----RKKFLLILDDVWTDDYSKWEPFRRCLINGHRE 299 (976)
Q Consensus 243 ~~l~-~~~~-----------------~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 299 (976)
..+. +..+ ..-.+++ ++.+.+.+. +.+.++|+|++..-+......+...+.....+
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 1110 0000 1112233 334444443 45679999999766666677777777665556
Q ss_pred cEEEEEcCch-hhhhcc-CCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHHh
Q 002044 300 SRILVTTRKE-TVARMM-ESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTIG 373 (976)
Q Consensus 300 s~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 373 (976)
+.+|++|... .+...+ .....+.+.+++.++..+++..... . .. ......+++.++|.|.....+.
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~---~-~~----~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGP---D-LP----DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcc---c-CC----HHHHHHHHHHcCCCHHHHHHHh
Confidence 6677777654 333222 3367899999999999999987531 1 11 1112568999999998665543
No 90
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.99 E-value=0.00013 Score=80.77 Aligned_cols=184 Identities=10% Similarity=0.117 Sum_probs=108.2
Q ss_pred CccccchhHHHHHHHHHhccccc----CCCCeEEEEEEecCCchHHHHHHHHhcccchhcc----cccc-eeehHHHHHH
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSE----QTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISN----FEKR-MWNCESIIEA 244 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~-~wv~~~~~~~ 244 (976)
.+++|.+..++.+.+++..+... ...-.+.+.++|+.|+||||+|+.+++. +-.. -.|. +-.|-.+.
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~--l~c~~~~~~~Cg~C~~C~~~~-- 80 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAA--LQCTDPDEPGCGECRACRTVL-- 80 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCCCCCCCCCCCHHHHHHh--
Confidence 46899999999999999754210 0013467889999999999999998762 1111 0110 00000000
Q ss_pred HhCCCC---------CcccHHHHHHHHHHHH-----cCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCc-h
Q 002044 245 LEGFAP---------NLGELNSLLLRIDAFI-----ARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRK-E 309 (976)
Q Consensus 245 l~~~~~---------~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~ 309 (976)
.+..+ ....+++ ++.+.+.. .+++-++|+|++..-+......+...+.....+..+|++|.+ .
T Consensus 81 -~~~hpD~~~i~~~~~~i~i~~-iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~ 158 (394)
T PRK07940 81 -AGTHPDVRVVAPEGLSIGVDE-VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPE 158 (394)
T ss_pred -cCCCCCEEEeccccccCCHHH-HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChH
Confidence 01111 1112222 22333333 234558888999665555556676666655556666666665 3
Q ss_pred hhhhcc-CCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHH
Q 002044 310 TVARMM-ESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTI 372 (976)
Q Consensus 310 ~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 372 (976)
.+...+ .....+.+.+++.++..+.+.... . .. .+.+..+++.++|.|.....+
T Consensus 159 ~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~---~--~~----~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 159 DVLPTIRSRCRHVALRTPSVEAVAEVLVRRD---G--VD----PETARRAARASQGHIGRARRL 213 (394)
T ss_pred HChHHHHhhCeEEECCCCCHHHHHHHHHHhc---C--CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 443332 335789999999999998887432 1 11 344667999999999755444
No 91
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.96 E-value=3.7e-07 Score=95.98 Aligned_cols=162 Identities=16% Similarity=0.165 Sum_probs=103.2
Q ss_pred CCCCCCceEEEEecCCCCCCCCccchhhHHHHhhcC-CCCCCCceEEEeecCCCCC-Cccccc-ccccccEEEEeCCCCC
Q 002044 734 DKKKNLVVLILRFNKEAPVGMKDENEANHEAVCEAL-QPPPNLESLQITGFKGRTL-MLSWIV-SLNKLKKLRLLFCDKC 810 (976)
Q Consensus 734 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~L~~~~~~~~-~p~~~~-~l~~L~~L~L~~~~~~ 810 (976)
..+..|+.|..+.+... .+.+...| ...++|+.|.+.+|....- ....++ +++.|+.+++..|...
T Consensus 291 ~~c~~lq~l~~s~~t~~-----------~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~ 359 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDI-----------TDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLI 359 (483)
T ss_pred hhhhHhhhhcccCCCCC-----------chHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccccee
Confidence 34567788877766432 13344443 4568999999999874321 112222 6789999999999754
Q ss_pred CC--CC-CCCCCCCcceeeccccccceEeCccccCCCcCcccccccCCCCCCCCCccCccCCccceeeeccccccccccc
Q 002044 811 EV--MP-ALGILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDF 887 (976)
Q Consensus 811 ~~--l~-~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~ 887 (976)
.+ +- .-.+.|.|+.|.|++|..++..+...+... ..+...|+.|++.+++...+-..
T Consensus 360 ~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~--------------------~c~~~~l~~lEL~n~p~i~d~~L 419 (483)
T KOG4341|consen 360 TDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS--------------------SCSLEGLEVLELDNCPLITDATL 419 (483)
T ss_pred hhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc--------------------cccccccceeeecCCCCchHHHH
Confidence 33 22 234789999999999987765432222111 12466788888888887654432
Q ss_pred CCCccccCCCcceEeeecCCCCCCCC--cCCCCCCCCCeEEEc
Q 002044 888 GKEDITIMPQLSSMKISYCSKLNSLP--DQLLQSTTLEELEII 928 (976)
Q Consensus 888 ~~~~~~~l~~L~~L~l~~c~~L~~lp--~~l~~l~~L~~L~l~ 928 (976)
. ....+++|+.+++.+|.....=| ..-.++|++++....
T Consensus 420 e--~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 420 E--HLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred H--HHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence 2 24578899999999998766533 223456666655443
No 92
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00013 Score=83.78 Aligned_cols=186 Identities=13% Similarity=0.087 Sum_probs=107.7
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHh-CCC---
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALE-GFA--- 249 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~-~~~--- 249 (976)
.++||-+..++.|..++.... -...+.++|+.|+||||+|+.+++...-...+.....-.+..-..+. +..
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 579999999999999997422 34567899999999999999988732111111100000000111111 110
Q ss_pred -----CCcccHHHHHHHHHHHH-----cCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCch-hhhhc-cCC
Q 002044 250 -----PNLGELNSLLLRIDAFI-----ARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKE-TVARM-MES 317 (976)
Q Consensus 250 -----~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~-~~~ 317 (976)
.....+++.. .+.+.+ .++.-++|+|+|..-....+..+...+......+++|++|.+. .+... ...
T Consensus 91 ~eidaas~~~v~~iR-~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SR 169 (509)
T PRK14958 91 FEVDAASRTKVEDTR-ELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSR 169 (509)
T ss_pred EEEcccccCCHHHHH-HHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHH
Confidence 0111222222 122221 2456689999997655566777777776655667777666443 33222 233
Q ss_pred cceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHH
Q 002044 318 TDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAA 369 (976)
Q Consensus 318 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 369 (976)
...+++++++.++..+.+.+.+-..+.... .+....|++.++|.+--+
T Consensus 170 c~~~~f~~l~~~~i~~~l~~il~~egi~~~----~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 170 CLQFHLAQLPPLQIAAHCQHLLKEENVEFE----NAALDLLARAANGSVRDA 217 (509)
T ss_pred hhhhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHH
Confidence 567899999999988877766533222222 233456888999977543
No 93
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.96 E-value=0.00023 Score=71.34 Aligned_cols=156 Identities=15% Similarity=0.089 Sum_probs=90.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhccc---ccceeehHHHHHHHh-------CCCCCcccHHHHHHHHHHHH----
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNF---EKRMWNCESIIEALE-------GFAPNLGELNSLLLRIDAFI---- 266 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~~~l~-------~~~~~~~~~~~~~~~l~~~l---- 266 (976)
...+.++|..|+||||+|+.+.+...-.... .+........+.... .........++... +.+.+
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~-i~~~~~~~~ 92 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRE-LVEFLSRTP 92 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHH-HHHHHccCc
Confidence 4678999999999999999887631111011 111111111110000 00001112222222 22222
Q ss_pred -cCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCch-hhhhcc-CCcceEecCCCCHHHHHHHHHHHhcCCC
Q 002044 267 -ARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKE-TVARMM-ESTDVIFIKELSEQECWALFKRFACFGR 343 (976)
Q Consensus 267 -~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~ 343 (976)
.+.+-++|+||+..-....++.+...+....+.+.+|++|++. .+...+ .....+.+.+++.++..+.+... +
T Consensus 93 ~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g-- 168 (188)
T TIGR00678 93 QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G-- 168 (188)
T ss_pred ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C--
Confidence 2456689999996554455677777776655566777777643 332222 23568999999999998888775 1
Q ss_pred CCCcchhHHHHHHHHHhhcCCCch
Q 002044 344 SLSECEQLEEIGKKIVGKCKGLPL 367 (976)
Q Consensus 344 ~~~~~~~~~~~~~~i~~~c~GlPL 367 (976)
.. .+.+..|++.++|.|.
T Consensus 169 --i~----~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 169 --IS----EEAAELLLALAGGSPG 186 (188)
T ss_pred --CC----HHHHHHHHHHcCCCcc
Confidence 11 3557789999999885
No 94
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.95 E-value=0.0001 Score=75.24 Aligned_cols=154 Identities=15% Similarity=0.143 Sum_probs=83.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchhcccc--cceeehH-HH----HHHHhCCCCCcccHHHHHHHHHHHHcCCceE
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVISNFE--KRMWNCE-SI----IEALEGFAPNLGELNSLLLRIDAFIARKKFL 272 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~-~~----~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~L 272 (976)
....+.|+|..|+|||.|.+++++ ...+..+ .++|++. .. ...+.. .. ...+.+.+. .-=+
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~~~~~f~~~~~~~~~~-----~~----~~~~~~~~~-~~Dl 100 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYLSAEEFIREFADALRD-----GE----IEEFKDRLR-SADL 100 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEEEHHHHHHHHHHHHHT-----TS----HHHHHHHHC-TSSE
T ss_pred CCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceeecHHHHHHHHHHHHHc-----cc----chhhhhhhh-cCCE
Confidence 344578999999999999999999 4443322 3567665 22 222222 11 223444444 3447
Q ss_pred EEEcCCCCCCc-cCcHh-HHHhhcC-CCCCcEEEEEcCchh---------hhhccCCcceEecCCCCHHHHHHHHHHHhc
Q 002044 273 LILDDVWTDDY-SKWEP-FRRCLIN-GHRESRILVTTRKET---------VARMMESTDVIFIKELSEQECWALFKRFAC 340 (976)
Q Consensus 273 lVlDdv~~~~~-~~~~~-l~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 340 (976)
|++||+..-.. ..|+. +...+.. ...|.+||+|++... +...+....++++++.+.++-.+++.+.+.
T Consensus 101 L~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~ 180 (219)
T PF00308_consen 101 LIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAK 180 (219)
T ss_dssp EEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHH
T ss_pred EEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHH
Confidence 88999954221 22332 2222221 134568999996432 223334466899999999999999998874
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCCchHH
Q 002044 341 FGRSLSECEQLEEIGKKIVGKCKGLPLAA 369 (976)
Q Consensus 341 ~~~~~~~~~~~~~~~~~i~~~c~GlPLai 369 (976)
...-. --+++++-|++.+.+..-.+
T Consensus 181 ~~~~~----l~~~v~~~l~~~~~~~~r~L 205 (219)
T PF00308_consen 181 ERGIE----LPEEVIEYLARRFRRDVREL 205 (219)
T ss_dssp HTT------S-HHHHHHHHHHTTSSHHHH
T ss_pred HhCCC----CcHHHHHHHHHhhcCCHHHH
Confidence 32221 12444445666655444333
No 95
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.00019 Score=83.78 Aligned_cols=188 Identities=12% Similarity=0.120 Sum_probs=108.3
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhccc-----------ccceeehHHHH
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNF-----------EKRMWNCESII 242 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-----------~~~~wv~~~~~ 242 (976)
.+++|.+..+..+...+... .-...+.++|+.|+||||+|+.+++.......+ .|.-.-.+..+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~-----ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMD-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 57899999999998888632 234568899999999999998887632111111 11000000001
Q ss_pred HHHhCCCC--------CcccHHHHHHHHHHHH-----cCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEc-Cc
Q 002044 243 EALEGFAP--------NLGELNSLLLRIDAFI-----ARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTT-RK 308 (976)
Q Consensus 243 ~~l~~~~~--------~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~ 308 (976)
.. +... ....++++.. +.+.+ .+++-++|+|++..-.....+.|...+..-...+.+|++| +.
T Consensus 91 ~~--g~~~n~~~~d~~s~~~vd~Ir~-l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~ 167 (620)
T PRK14954 91 DA--GTSLNISEFDAASNNSVDDIRQ-LRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTEL 167 (620)
T ss_pred hc--cCCCCeEEecccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 00 1100 1111233322 22222 3455588999996544455667777776655556655554 44
Q ss_pred hhhhhc-cCCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCch-HHHHHh
Q 002044 309 ETVARM-MESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPL-AAKTIG 373 (976)
Q Consensus 309 ~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~ 373 (976)
..+... ......+++.+++.++....+...+...+.... .+.++.|++.++|..- |+..+-
T Consensus 168 ~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~----~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 168 HKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID----ADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred hhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHHH
Confidence 444332 244678999999999988888776532221122 3455669999999554 444443
No 96
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=6.8e-05 Score=87.43 Aligned_cols=188 Identities=15% Similarity=0.117 Sum_probs=110.4
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhccc-------ccceee-hH-HHHHH
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNF-------EKRMWN-CE-SIIEA 244 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-------~~~~wv-~~-~~~~~ 244 (976)
.+++|.+..++.|...+... .-...+.++|+.|+||||+|+.+++........ +..-+. ++ .+...
T Consensus 24 ~dliGq~~~v~~L~~~~~~g-----ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g 98 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETG-----RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEG 98 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcC
Confidence 57999999999999988742 234578899999999999999998732111100 111111 01 11110
Q ss_pred HhCC-----CCCcccHHHHHHHHHHHH-----cCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEc-Cchhhhh
Q 002044 245 LEGF-----APNLGELNSLLLRIDAFI-----ARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTT-RKETVAR 313 (976)
Q Consensus 245 l~~~-----~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~v~~ 313 (976)
.... ......++++. .+.+.+ .+++-++|+|++..-.....+.|...+..-..++.+|++| ....+..
T Consensus 99 ~h~Dv~e~~a~s~~gvd~IR-eIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~ 177 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDDIR-EIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPV 177 (598)
T ss_pred CCCceEEecccccCCHHHHH-HHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhH
Confidence 0000 00111222222 222222 2455689999996544455667777776655667776655 3333332
Q ss_pred cc-CCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHH
Q 002044 314 MM-ESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKT 371 (976)
Q Consensus 314 ~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 371 (976)
.+ .....+.+.+++.++....+.+.+-..+.... .+....|++.++|.+.-+..
T Consensus 178 tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~----~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 178 TVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE----DEALALIARAAEGSVRDGLS 232 (598)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 22 33568999999999999999887643322222 34556689999998865443
No 97
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00018 Score=83.10 Aligned_cols=193 Identities=15% Similarity=0.142 Sum_probs=112.4
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHH-HhCCCCCc
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEA-LEGFAPNL 252 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-l~~~~~~~ 252 (976)
.+++|.+..++.|...+... .-...+.++|+.|+||||+|+.+++............+-.+..-.. ..+...+.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~-----ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv 90 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQEN-----RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDV 90 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCce
Confidence 46899988888888888632 1246788999999999999999987421111111111111100011 11111111
Q ss_pred --------ccHHHHHHHHHHHH-----cCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCc-hhhhhc-cCC
Q 002044 253 --------GELNSLLLRIDAFI-----ARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRK-ETVARM-MES 317 (976)
Q Consensus 253 --------~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~-~~~ 317 (976)
..++. ++.+.+.+ .+++-++|+|++..-....++.|...+........+|++|.. ..+... ...
T Consensus 91 ~eId~a~~~~Id~-iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SR 169 (624)
T PRK14959 91 VEIDGASNRGIDD-AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSR 169 (624)
T ss_pred EEEecccccCHHH-HHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhh
Confidence 11222 22233222 356679999999655445566777777554445566665554 444322 233
Q ss_pred cceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCc-hHHHHHhhhh
Q 002044 318 TDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLP-LAAKTIGSLL 376 (976)
Q Consensus 318 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~~~l 376 (976)
...+++++++.++..+.+...+........ .+.++.|++.++|.+ .|+..+...+
T Consensus 170 cq~i~F~pLs~~eL~~~L~~il~~egi~id----~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 170 CQHFTFTRLSEAGLEAHLTKVLGREGVDYD----PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhccccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 568899999999999888876643322122 345566888999854 6777766544
No 98
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.91 E-value=0.00012 Score=81.97 Aligned_cols=158 Identities=14% Similarity=0.170 Sum_probs=90.1
Q ss_pred CCccccchhHHHHHHHHHhccccc-------CCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHH
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSSE-------QTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEAL 245 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l 245 (976)
..++.|+++.++++.+.+..+-.. +-...+-|.++|++|+|||++|+.+++. ....|- ......+....
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~~i--~v~~~~l~~~~ 205 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATFI--RVVGSELVQKF 205 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCCEE--EeehHHHhHhh
Confidence 357899999999998876432110 0134567899999999999999999983 332321 11111222221
Q ss_pred hCCCCCcccHHHHHHHHHHHH-cCCceEEEEcCCCCC-----------CccCcHhHHHhhcC-----CCCCcEEEEEcCc
Q 002044 246 EGFAPNLGELNSLLLRIDAFI-ARKKFLLILDDVWTD-----------DYSKWEPFRRCLIN-----GHRESRILVTTRK 308 (976)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-----------~~~~~~~l~~~l~~-----~~~gs~iivTtR~ 308 (976)
.+ ........+.+.. ...+.+|++|++..- +......+...+.. ...+..||.||..
T Consensus 206 ~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~ 279 (389)
T PRK03992 206 IG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNR 279 (389)
T ss_pred cc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCC
Confidence 11 1122222333322 346789999999431 00111123222211 1235678878875
Q ss_pred hhhhh-cc----CCcceEecCCCCHHHHHHHHHHHhc
Q 002044 309 ETVAR-MM----ESTDVIFIKELSEQECWALFKRFAC 340 (976)
Q Consensus 309 ~~v~~-~~----~~~~~~~l~~L~~~~~~~Lf~~~~~ 340 (976)
..... .+ .-...+.+++.+.++..++|+.++.
T Consensus 280 ~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~ 316 (389)
T PRK03992 280 IDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTR 316 (389)
T ss_pred hhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhc
Confidence 43221 11 1245799999999999999988764
No 99
>PTZ00202 tuzin; Provisional
Probab=97.91 E-value=0.00023 Score=76.92 Aligned_cols=157 Identities=18% Similarity=0.185 Sum_probs=94.8
Q ss_pred cccCCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH--------HH
Q 002044 170 LIDLSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE--------SI 241 (976)
Q Consensus 170 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--------~~ 241 (976)
..+.+.|+||+.++.++...|...+. ...+++.|.|++|+|||||++.+..... +. ..+++. .+
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~----~~-qL~vNprg~eElLr~L 329 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG----MP-AVFVDVRGTEDTLRSV 329 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC----ce-EEEECCCCHHHHHHHH
Confidence 34567899999999999999975432 2456999999999999999999987432 11 222221 44
Q ss_pred HHHHhCCCCCcccHHHHHHHHHHHH-----c-CCceEEEEcCCCCCCccCcHhH---HHhhcCCCCCcEEEEEcCchhhh
Q 002044 242 IEALEGFAPNLGELNSLLLRIDAFI-----A-RKKFLLILDDVWTDDYSKWEPF---RRCLINGHRESRILVTTRKETVA 312 (976)
Q Consensus 242 ~~~l~~~~~~~~~~~~~~~~l~~~l-----~-~k~~LlVlDdv~~~~~~~~~~l---~~~l~~~~~gs~iivTtR~~~v~ 312 (976)
+.+++-. ......++...|.+.+ . +++.+||+-==.. ..+..+ ...|.....-|+|++---.+.+.
T Consensus 330 L~ALGV~--p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg---~~l~rvyne~v~la~drr~ch~v~evpleslt 404 (550)
T PTZ00202 330 VKALGVP--NVEACGDLLDFISEACRRAKKMNGETPLLVLKLREG---SSLQRVYNEVVALACDRRLCHVVIEVPLESLT 404 (550)
T ss_pred HHHcCCC--CcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCC---CcHHHHHHHHHHHHccchhheeeeeehHhhcc
Confidence 5555431 1122233333433332 2 5677777653211 122221 12244445557888876655443
Q ss_pred hcc---CCcceEecCCCCHHHHHHHHHHHh
Q 002044 313 RMM---ESTDVIFIKELSEQECWALFKRFA 339 (976)
Q Consensus 313 ~~~---~~~~~~~l~~L~~~~~~~Lf~~~~ 339 (976)
... ..-..|-+.+++.++|.++-.+..
T Consensus 405 ~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 405 IANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 321 234689999999999988887654
No 100
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00011 Score=85.21 Aligned_cols=192 Identities=14% Similarity=0.126 Sum_probs=108.8
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhccc---cccee-ehHHHHHH-----
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNF---EKRMW-NCESIIEA----- 244 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~w-v~~~~~~~----- 244 (976)
.+++|.+..++.+..++.... -...+.++|..|+||||+|+.+++........ .|... .|..+...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 578999999999999887422 34567899999999999999997632111000 11000 00000000
Q ss_pred HhCCCCCcccHHHHHHHHHHHH-----cCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCc-hhhhhc-cCC
Q 002044 245 LEGFAPNLGELNSLLLRIDAFI-----ARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRK-ETVARM-MES 317 (976)
Q Consensus 245 l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~-~~~ 317 (976)
+.-.......++... .+.+.. .+++-++|+|++..-.......+...+......+.+|++|.+ ..+... ...
T Consensus 91 ~ei~~~~~~~vd~ir-~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SR 169 (527)
T PRK14969 91 IEVDAASNTQVDAMR-ELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR 169 (527)
T ss_pred eEeeccccCCHHHHH-HHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHH
Confidence 000000011222222 222222 345669999999655444566677777665556666666644 333221 123
Q ss_pred cceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCch-HHHHHhhh
Q 002044 318 TDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPL-AAKTIGSL 375 (976)
Q Consensus 318 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~~ 375 (976)
...+++++++.++..+.+.+.+...+.... .+....|++.++|.+- |+..+-.+
T Consensus 170 c~~~~f~~l~~~~i~~~L~~il~~egi~~~----~~al~~la~~s~Gslr~al~lldqa 224 (527)
T PRK14969 170 CLQFNLKQMPPPLIVSHLQHILEQENIPFD----ATALQLLARAAAGSMRDALSLLDQA 224 (527)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 568999999999999888776532221111 3344568899999774 44444333
No 101
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=0.00025 Score=83.16 Aligned_cols=189 Identities=15% Similarity=0.126 Sum_probs=108.4
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCC----
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFA---- 249 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~---- 249 (976)
.+++|.+..++.+..++... .-.+.+.++|+.|+||||+|+.+++..- ..+.. ..+..+..-....+..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~-----rl~HAYLF~GP~GtGKTt~AriLAk~Ln-C~~~~-~~~~pC~~C~~~~~~~~Dvi 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSN-----KISHAYLFSGPRGTGKTSVAKIFANALN-CSHKT-DLLEPCQECIENVNNSLDII 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhc-ccccC-CCCCchhHHHHhhcCCCcEE
Confidence 47899999999999988742 2356778999999999999999976311 11100 0000000000000110
Q ss_pred -------CCcccHHHHHHHHHHH-HcCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEE-EcCchhhhhc-cCCcc
Q 002044 250 -------PNLGELNSLLLRIDAF-IARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILV-TTRKETVARM-MESTD 319 (976)
Q Consensus 250 -------~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-TtR~~~v~~~-~~~~~ 319 (976)
....++.++...+... ..+++-++|+|++..-....+..+...+-.......+|+ |++...+... .....
T Consensus 91 eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq 170 (725)
T PRK07133 91 EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQ 170 (725)
T ss_pred EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhce
Confidence 1111122222222211 225566999999965444566777776665444555554 4444444432 23457
Q ss_pred eEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCch-HHHHHh
Q 002044 320 VIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPL-AAKTIG 373 (976)
Q Consensus 320 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~ 373 (976)
.+.+.+++.++..+.+...+-..+.... .+.+..|++.++|.+- |+..+-
T Consensus 171 ~ieF~~L~~eeI~~~L~~il~kegI~id----~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 171 RFNFRRISEDEIVSRLEFILEKENISYE----KNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred eEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 8999999999999888876532222111 3345669999998664 444443
No 102
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00024 Score=82.44 Aligned_cols=194 Identities=15% Similarity=0.151 Sum_probs=113.3
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhccc---cccee-ehHHHHHH-----
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNF---EKRMW-NCESIIEA----- 244 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~w-v~~~~~~~----- 244 (976)
.+++|.+..++.|..++... .-...+.++|+.|+||||+|+.+++...-.... .|... .|..+...
T Consensus 13 ~eivGq~~i~~~L~~~i~~~-----r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~ 87 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAG-----RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSI 87 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCc
Confidence 57899999999999998742 234567899999999999999998732111111 11100 01111100
Q ss_pred ----HhC-CCCCcccHHHHHHHHHHH-HcCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEc-Cchhhhhc-cC
Q 002044 245 ----LEG-FAPNLGELNSLLLRIDAF-IARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTT-RKETVARM-ME 316 (976)
Q Consensus 245 ----l~~-~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~v~~~-~~ 316 (976)
+.+ ......+..++...+... ..+++-++|+|++..-.....+.|...+........+|++| ....+... ..
T Consensus 88 dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~S 167 (584)
T PRK14952 88 DVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRS 167 (584)
T ss_pred eEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHH
Confidence 000 011122222222222211 13456689999997655566777777777655566666555 44444432 23
Q ss_pred CcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCch-HHHHHhhhh
Q 002044 317 STDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPL-AAKTIGSLL 376 (976)
Q Consensus 317 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~~l 376 (976)
....+++.+++.++..+.+.+.+...+.... .+....|++.++|.+- |+..+-.++
T Consensus 168 Rc~~~~F~~l~~~~i~~~L~~i~~~egi~i~----~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 168 RTHHYPFRLLPPRTMRALIARICEQEGVVVD----DAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred hceEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4678999999999998888876643222122 3344568889999774 555554444
No 103
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.90 E-value=1.5e-06 Score=86.99 Aligned_cols=122 Identities=25% Similarity=0.296 Sum_probs=65.3
Q ss_pred ccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccccCccc
Q 002044 549 YARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLPETC 626 (976)
Q Consensus 549 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp~~i 626 (976)
.++.|.++++++|.+.. +.....-.+.+|+|+++ .+++..+- ++..|.+|..||| +.+.++-..-
T Consensus 282 TWq~LtelDLS~N~I~~------iDESvKL~Pkir~L~lS------~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh 348 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQ------IDESVKLAPKLRRLILS------QNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGWH 348 (490)
T ss_pred hHhhhhhccccccchhh------hhhhhhhccceeEEecc------ccceeeeh-hhhhcccceEeecccchhHhhhhhH
Confidence 34556666666665322 11223444556666666 44443332 3555666666666 2333333333
Q ss_pred cccCCccEEecCCCCCCcccchhhcccCCCcEEEecccccccCc--ccccCCCCCCcCCce
Q 002044 627 CELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLEYMP--KGIERLTSLRTLSEF 685 (976)
Q Consensus 627 ~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~~~ 685 (976)
.+|-|.++|+|.+|. +..+ +++++|-+|..|++..|++..+. .+||+|+.|++|.+.
T Consensus 349 ~KLGNIKtL~La~N~-iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNK-IETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred hhhcCEeeeehhhhh-Hhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence 455666666666664 4444 34566666666666666665543 356666666666543
No 104
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.89 E-value=3e-06 Score=87.39 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=30.4
Q ss_pred cccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCc
Q 002044 546 SIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGM 590 (976)
Q Consensus 546 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~ 590 (976)
....+..+..+++++|.+..... ..+...+.+.+.||.-++++.
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa-~~i~~~L~~~~~L~~v~~sd~ 68 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAA-RAIAKVLASKKELREVNLSDM 68 (382)
T ss_pred HhcccCceEEEeccCCchhHHHH-HHHHHHHhhcccceeeehHhh
Confidence 34556778889999988754433 334555777888888888843
No 105
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=0.00016 Score=87.29 Aligned_cols=185 Identities=12% Similarity=0.122 Sum_probs=109.0
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhccc---ccceee-hHHHHHH-----
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNF---EKRMWN-CESIIEA----- 244 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv-~~~~~~~----- 244 (976)
.+++|.+..++.|..++... .-...+.++|..|+||||+|+.+.+...-.... .|...- |..+...
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~-----ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSG-----RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 47899999999999998742 234578899999999999999997732111111 111110 0011100
Q ss_pred ----HhC-CCCCcccHHHHHHHHH-HHHcCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcC-chhhhhcc-C
Q 002044 245 ----LEG-FAPNLGELNSLLLRID-AFIARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTR-KETVARMM-E 316 (976)
Q Consensus 245 ----l~~-~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR-~~~v~~~~-~ 316 (976)
+.. ......++.++...+. .-..+++-++|||++..-....++.|...+..-...+.+|++|. ...+...+ .
T Consensus 90 dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrS 169 (824)
T PRK07764 90 DVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRS 169 (824)
T ss_pred cEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHh
Confidence 000 0011112222222211 11235556899999976666677778888876656666666554 34444332 3
Q ss_pred CcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCch
Q 002044 317 STDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPL 367 (976)
Q Consensus 317 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 367 (976)
....|++.+++.++..+.+.+.+-..+.... .+....|++.++|.+.
T Consensus 170 Rc~~v~F~~l~~~~l~~~L~~il~~EGv~id----~eal~lLa~~sgGdlR 216 (824)
T PRK07764 170 RTHHYPFRLVPPEVMRGYLERICAQEGVPVE----PGVLPLVIRAGGGSVR 216 (824)
T ss_pred heeEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHH
Confidence 4678999999999998888776532221111 3344568999999874
No 106
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.0005 Score=75.49 Aligned_cols=194 Identities=16% Similarity=0.173 Sum_probs=111.2
Q ss_pred ccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhccccc--ceeehH-----------HH
Q 002044 175 EVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEK--RMWNCE-----------SI 241 (976)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~--~~wv~~-----------~~ 241 (976)
.+.+|+++++++...|...-.+ ....-+.|+|.+|+|||+.++.+.+ ++...... +++|++ .+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~--~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRG--ERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKI 93 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcC--CCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHH
Confidence 4999999999999988755432 2233389999999999999999998 44433221 455554 44
Q ss_pred HHHHhCCCCCcccHHHHHHHHHHHHc--CCceEEEEcCCCCCCccCcHhHHHhhcCCC-CCcEE--EEEcCchhhhhccC
Q 002044 242 IEALEGFAPNLGELNSLLLRIDAFIA--RKKFLLILDDVWTDDYSKWEPFRRCLINGH-RESRI--LVTTRKETVARMME 316 (976)
Q Consensus 242 ~~~l~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~gs~i--ivTtR~~~v~~~~~ 316 (976)
...+...........+....+.+.+. ++.+++|||++..-....-+.+-..+.... ..++| |..+.+......+.
T Consensus 94 ~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 94 LNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 44444333333455666677777765 578999999994321111122322222222 23443 33444433322221
Q ss_pred C-------cceEecCCCCHHHHHHHHHHHhcCC--CCCCcchhHHHHHHHHHhhcCCCchHHHHH
Q 002044 317 S-------TDVIFIKELSEQECWALFKRFACFG--RSLSECEQLEEIGKKIVGKCKGLPLAAKTI 372 (976)
Q Consensus 317 ~-------~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 372 (976)
. ...+...|-+.+|-...+..++-.+ .....+..++-++...++..|-.-.||..+
T Consensus 174 ~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 174 PRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 1 2247788999999999998876322 111223344444444444444444555444
No 107
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.86 E-value=0.00014 Score=89.13 Aligned_cols=152 Identities=19% Similarity=0.202 Sum_probs=88.3
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhccc------cccee-ehHHHHHHHh
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNF------EKRMW-NCESIIEALE 246 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f------~~~~w-v~~~~~~~l~ 246 (976)
..++||+.++.++++.|... ...-+.++|.+|+||||+|+.+++ ++.... ...+| +... . +.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~------~~~n~lLvG~pGvGKTal~~~La~--~i~~~~v~~~l~~~~i~~l~l~--~-l~ 255 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR------RQNNPILTGEAGVGKTAVVEGLAL--RIAAGDVPPALRNVRLLSLDLG--L-LQ 255 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC------CcCceeEECCCCCCHHHHHHHHHH--HHhhCCCCccccCCeEEEeehh--h-hh
Confidence 46899999999999998743 333456999999999999999988 332211 12232 1111 1 11
Q ss_pred CCCCCcccHHHHHHHHHHHHc--CCceEEEEcCCCCCC-------ccCcHh-HHHhhcCCCCCcEEEEEcCchhhhhc--
Q 002044 247 GFAPNLGELNSLLLRIDAFIA--RKKFLLILDDVWTDD-------YSKWEP-FRRCLINGHRESRILVTTRKETVARM-- 314 (976)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-------~~~~~~-l~~~l~~~~~gs~iivTtR~~~v~~~-- 314 (976)
.......+.++....+.+.+. +++.+|++|++..-. ..+... +...+..+ .-++|-||........
T Consensus 256 ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~IgaTT~~e~~~~~~ 333 (852)
T TIGR03345 256 AGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRTIAATTWAEYKKYFE 333 (852)
T ss_pred cccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEEEEecCHHHHhhhhh
Confidence 111122233333444444332 468999999985321 111111 33333222 2466666665332111
Q ss_pred -----cCCcceEecCCCCHHHHHHHHHHH
Q 002044 315 -----MESTDVIFIKELSEQECWALFKRF 338 (976)
Q Consensus 315 -----~~~~~~~~l~~L~~~~~~~Lf~~~ 338 (976)
.....++.+++++.++..+++...
T Consensus 334 ~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 334 KDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred ccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 123468999999999999997544
No 108
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.85 E-value=1.7e-05 Score=84.52 Aligned_cols=261 Identities=22% Similarity=0.192 Sum_probs=155.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchhcccccce-eehH------HHHHH-HhCC-CCCcccHHHHHHHHHHHHcCCc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRM-WNCE------SIIEA-LEGF-APNLGELNSLLLRIDAFIARKK 270 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~-wv~~------~~~~~-l~~~-~~~~~~~~~~~~~l~~~l~~k~ 270 (976)
..|.|.++|.|||||||++-.+.. +...|.... ++.. +.... +.+. ......-+.....+.....++|
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~rr 89 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIGDRR 89 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHhhhh
Confidence 568999999999999999988887 556675544 3332 11111 1111 0111112334456677778899
Q ss_pred eEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCchhhhhccCCcceEecCCCCHH-HHHHHHHHHhcCCCCC-Ccc
Q 002044 271 FLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKETVARMMESTDVIFIKELSEQ-ECWALFKRFACFGRSL-SEC 348 (976)
Q Consensus 271 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~Lf~~~~~~~~~~-~~~ 348 (976)
.++|+||...- ...-..+...+..+...-.|+.|+|..-.. .....+.+.+|+.. ++.++|...+...... ...
T Consensus 90 ~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~ 165 (414)
T COG3903 90 ALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLT 165 (414)
T ss_pred HHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccceeec
Confidence 99999998211 112222333444455555788888865433 33456677777765 7889987765322211 112
Q ss_pred hhHHHHHHHHHhhcCCCchHHHHHhhhhccCCCHHHHHHHHhhhhhhhh-------hhhhhhhHHHHhhhcCCcHHHHHH
Q 002044 349 EQLEEIGKKIVGKCKGLPLAAKTIGSLLRFKRTREEWQSILDSEIWQLE-------EFEKGLLAPLLLSYNDLPTIIKQC 421 (976)
Q Consensus 349 ~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~-------~~~~~~~~~l~~sy~~L~~~~k~c 421 (976)
........+|.++.+|.|++|...++..+.-. ..+-...++.....+. --.......+.+||.-|....+--
T Consensus 166 ~~~~a~v~~icr~ldg~~laielaaarv~sl~-~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~ 244 (414)
T COG3903 166 DDNAAAVAEICRRLDGIPLAIELAAARVRSLS-PDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERAL 244 (414)
T ss_pred CCchHHHHHHHHHhhcchHHHHHHHHHHHhcC-HHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHH
Confidence 33456677899999999999999998776432 2222222222111111 123457889999999999988889
Q ss_pred HhhhcccCCCceeChHHHHHHHHHcCcccccCCchhhHHHHHHHHHHHHHhcCCccc
Q 002044 422 FLYCAVFPKDCFLERDELIKLWMAQGYIVQKGNKEMEMEMIGEGYFDYLATRSFFQE 478 (976)
Q Consensus 422 fl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~~L~~r~ll~~ 478 (976)
|--++.|.-.+... ...|.+-|-..... ......-+..+++.+++..
T Consensus 245 ~~rLa~~~g~f~~~----l~~~~a~g~~~~~~------~y~~~~a~~ll~~kslv~a 291 (414)
T COG3903 245 FGRLAVFVGGFDLG----LALAVAAGADVDVP------RYLVLLALTLLVDKSLVVA 291 (414)
T ss_pred hcchhhhhhhhccc----HHHHHhcCCccccc------hHHHHHHHHHHhhccchhh
Confidence 99999998876544 23444433221000 2223344566777777643
No 109
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.85 E-value=0.00011 Score=89.32 Aligned_cols=154 Identities=20% Similarity=0.219 Sum_probs=88.9
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhc-----cc-ccceeehHHHHHHHhC
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVIS-----NF-EKRMWNCESIIEALEG 247 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-----~f-~~~~wv~~~~~~~l~~ 247 (976)
..++||+.+++++++.|... ...-+.++|.+|+|||++|+.+++. +.. .+ ...+|.. ++...+.+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~------~~~n~lL~G~pG~GKT~l~~~la~~--~~~~~~p~~l~~~~~~~~-~~~~l~a~ 252 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR------KKNNPLLVGEPGVGKTAIAEGLALR--IAEGKVPENLKNAKIYSL-DMGSLLAG 252 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHH--HHhCCCchhhcCCeEEEe-cHHHHhhh
Confidence 46899999999999988743 2334579999999999999999883 311 11 2333321 11111111
Q ss_pred CCCCcccHHHHHHHHHHHHc-CCceEEEEcCCCCCC---------ccCcHhHHHhhcCCCCCcEEEEEcCchhhhh----
Q 002044 248 FAPNLGELNSLLLRIDAFIA-RKKFLLILDDVWTDD---------YSKWEPFRRCLINGHRESRILVTTRKETVAR---- 313 (976)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~---- 313 (976)
. ....+.++....+.+.++ .++.+|++|++..-. .+.-+.+...+..+ .-++|-+|.......
T Consensus 253 ~-~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~IgaTt~~e~~~~~~~ 329 (731)
T TIGR02639 253 T-KYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRCIGSTTYEEYKNHFEK 329 (731)
T ss_pred c-cccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEEEEecCHHHHHHHhhh
Confidence 1 112344444555555443 468999999995210 11112233333221 134555555422211
Q ss_pred --c-cCCcceEecCCCCHHHHHHHHHHHh
Q 002044 314 --M-MESTDVIFIKELSEQECWALFKRFA 339 (976)
Q Consensus 314 --~-~~~~~~~~l~~L~~~~~~~Lf~~~~ 339 (976)
. ......+.+++++.++..+++....
T Consensus 330 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 330 DRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred hHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 1 1224579999999999999998654
No 110
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00014 Score=81.50 Aligned_cols=174 Identities=18% Similarity=0.212 Sum_probs=102.8
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhc--------ccccceeehHHHHHHH
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVIS--------NFEKRMWNCESIIEAL 245 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--------~f~~~~wv~~~~~~~l 245 (976)
.+++|.+...+.+...+... .-.+.+.++|++|+||||+|+.+.+. +.. .|...+. . +
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~--l~~~~~~~~~~~~~~~~~-~------l 82 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARK--INQPGYDDPNEDFSFNIF-E------L 82 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCCCCCCCcceE-E------e
Confidence 57899999999999998742 23468889999999999999999773 211 1211110 0 0
Q ss_pred hCCCCCcccHHHHHHHHHHH----HcCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcC-chhhhhc-cCCcc
Q 002044 246 EGFAPNLGELNSLLLRIDAF----IARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTR-KETVARM-MESTD 319 (976)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR-~~~v~~~-~~~~~ 319 (976)
........+.....+.+. ..+++-++|+|++..-....++.+...+......+.+|++|. ...+... .....
T Consensus 83 --~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~ 160 (367)
T PRK14970 83 --DAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQ 160 (367)
T ss_pred --ccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcce
Confidence 001111122222222211 124556899999954333446666666654444456665553 3333222 23346
Q ss_pred eEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCch
Q 002044 320 VIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPL 367 (976)
Q Consensus 320 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 367 (976)
.++..++++++....+...+...+.... .+..+.+++.++|.+-
T Consensus 161 ~v~~~~~~~~~l~~~l~~~~~~~g~~i~----~~al~~l~~~~~gdlr 204 (367)
T PRK14970 161 IFDFKRITIKDIKEHLAGIAVKEGIKFE----DDALHIIAQKADGALR 204 (367)
T ss_pred eEecCCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhCCCCHH
Confidence 8999999999999888877643322122 3455668888888654
No 111
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.83 E-value=9.8e-05 Score=90.89 Aligned_cols=152 Identities=21% Similarity=0.218 Sum_probs=88.8
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhc-----cc-ccceeehHHHHHHHhC
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVIS-----NF-EKRMWNCESIIEALEG 247 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-----~f-~~~~wv~~~~~~~l~~ 247 (976)
..++||+++++++++.|.... ..-+.++|.+|+|||++|+.++.. +.. .. ...+|. .+....+.+
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~--i~~~~vp~~l~~~~i~~-l~~~~l~ag 249 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQR--IVNRDVPDILEDKLVIT-LDIGLLLAG 249 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEE-eeHHHHhcc
Confidence 458999999999999997432 234569999999999999999873 321 11 233443 233222322
Q ss_pred CCCCcccHHHHHHHHHHHH-cCCceEEEEcCCCCC-------CccCcHh-HHHhhcCCCCCcEEEEEcCchhhhhc----
Q 002044 248 FAPNLGELNSLLLRIDAFI-ARKKFLLILDDVWTD-------DYSKWEP-FRRCLINGHRESRILVTTRKETVARM---- 314 (976)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-------~~~~~~~-l~~~l~~~~~gs~iivTtR~~~v~~~---- 314 (976)
.. ...+.++....+.+.+ +.++.+|++|++..- ....... +...+.. + .-++|.+|........
T Consensus 250 ~~-~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g-~l~~IgaTt~~ey~~~ie~D 326 (821)
T CHL00095 250 TK-YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-G-ELQCIGATTLDEYRKHIEKD 326 (821)
T ss_pred CC-CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-C-CcEEEEeCCHHHHHHHHhcC
Confidence 22 1233444444444444 356899999999420 0111222 2222222 2 2456666665443221
Q ss_pred ---cCCcceEecCCCCHHHHHHHHHH
Q 002044 315 ---MESTDVIFIKELSEQECWALFKR 337 (976)
Q Consensus 315 ---~~~~~~~~l~~L~~~~~~~Lf~~ 337 (976)
.....++.+...+.++..+++..
T Consensus 327 ~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 327 PALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHhcceEEecCCCCHHHHHHHHHH
Confidence 12345788899999998888864
No 112
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.82 E-value=0.00022 Score=80.93 Aligned_cols=165 Identities=21% Similarity=0.140 Sum_probs=95.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhccc--ccceeehH-HHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcC
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNF--EKRMWNCE-SIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDD 277 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~-~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDd 277 (976)
..-+.|+|..|+|||+|++.+++. +.... ..+++++. ++...+...... .......+++.++ +.-+||+||
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~--l~~~~~~~~v~yv~~~~f~~~~~~~l~~---~~~~~~~~~~~~~-~~dvLiIDD 214 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNY--IESNFSDLKVSYMSGDEFARKAVDILQK---THKEIEQFKNEIC-QNDVLIIDD 214 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEHHHHHHHHHHHHHH---hhhHHHHHHHHhc-cCCEEEEec
Confidence 346899999999999999999883 33221 23456655 222222110000 0012233444443 344888999
Q ss_pred CCCCCc-cCc-HhHHHhhcC-CCCCcEEEEEcCch---------hhhhccCCcceEecCCCCHHHHHHHHHHHhcCCCCC
Q 002044 278 VWTDDY-SKW-EPFRRCLIN-GHRESRILVTTRKE---------TVARMMESTDVIFIKELSEQECWALFKRFACFGRSL 345 (976)
Q Consensus 278 v~~~~~-~~~-~~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 345 (976)
+..... ..+ +.+...+.. ...|..||+|+... .+...+...-++.+++++.++-.+++.+.+-..+-.
T Consensus 215 iq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~ 294 (450)
T PRK14087 215 VQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIK 294 (450)
T ss_pred cccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCC
Confidence 954221 122 223332222 12345789987643 222333446688999999999999999887432110
Q ss_pred CcchhHHHHHHHHHhhcCCCchHHHHHh
Q 002044 346 SECEQLEEIGKKIVGKCKGLPLAAKTIG 373 (976)
Q Consensus 346 ~~~~~~~~~~~~i~~~c~GlPLai~~~~ 373 (976)
..--+++..-|++.++|.|-.+..+.
T Consensus 295 --~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 295 --QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred --CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 01225667779999999987766554
No 113
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.82 E-value=0.00026 Score=80.38 Aligned_cols=191 Identities=15% Similarity=0.138 Sum_probs=107.4
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhc----ccccceeehHHHHHH-----
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVIS----NFEKRMWNCESIIEA----- 244 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~----- 244 (976)
.+++|.+..++.+..++... .-...+.++|..|+||||+|+.+++...-.. .-.|.....+..+..
T Consensus 17 ~diiGq~~~v~~L~~~i~~~-----~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFN-----RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 57899999999999988632 1246788999999999999999876311100 001111110100000
Q ss_pred ---HhCC-CCCcccHHHHHHHHHH-HHcCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcC-chhhhhc-cCC
Q 002044 245 ---LEGF-APNLGELNSLLLRIDA-FIARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTR-KETVARM-MES 317 (976)
Q Consensus 245 ---l~~~-~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR-~~~v~~~-~~~ 317 (976)
+.+. .....+..++...+.. -..+++-++|+|++..-.....+.+...+........+|++|. ...+... ...
T Consensus 92 ~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sR 171 (451)
T PRK06305 92 VLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSR 171 (451)
T ss_pred eEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHh
Confidence 0000 0011122222221111 1225677899999854333445567777666545666766664 3333322 233
Q ss_pred cceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCc-hHHHHHh
Q 002044 318 TDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLP-LAAKTIG 373 (976)
Q Consensus 318 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~ 373 (976)
...++++++++++....+...+-..+... -.+.++.|++.++|.+ .|+..+-
T Consensus 172 c~~v~f~~l~~~el~~~L~~~~~~eg~~i----~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 172 CQKMHLKRIPEETIIDKLALIAKQEGIET----SREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred ceEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56899999999999888887653222111 1345666999999966 4444443
No 114
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.78 E-value=1.8e-05 Score=89.95 Aligned_cols=122 Identities=25% Similarity=0.378 Sum_probs=71.9
Q ss_pred ccCceeEEEecCcccchhhhHHHHHHHHhcCC-CcceEEecCcccccCCCCcccCccccCCCccceecC--ccccccCcc
Q 002044 549 YARKLRSLMLSYNTLNQKASAQVLQGLFDQLT-GLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLPET 625 (976)
Q Consensus 549 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp~~ 625 (976)
....+..|.+.++.+..... ....++ +|+.|+++ .+.+..+|..++.+++|+.|++ +.+..+|..
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~------~~~~~~~nL~~L~l~------~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~ 181 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPP------LIGLLKSNLKELDLS------DNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKL 181 (394)
T ss_pred cccceeEEecCCcccccCcc------ccccchhhccccccc------ccchhhhhhhhhccccccccccCCchhhhhhhh
Confidence 33556666666665433211 123332 66666666 5556666656666666666666 556666666
Q ss_pred ccccCCccEEecCCCCCCcccchhhcccCCCcEEEecccccccCcccccCCCCCCcCC
Q 002044 626 CCELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLEYMPKGIERLTSLRTLS 683 (976)
Q Consensus 626 i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 683 (976)
.+.+.+|+.|++++|. +..+|..+..+..|+.|.++.|.+...+..+.+++++..|.
T Consensus 182 ~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~ 238 (394)
T COG4886 182 LSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLE 238 (394)
T ss_pred hhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccc
Confidence 5566666666666665 66666665556666666666665555555566666655554
No 115
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00036 Score=82.14 Aligned_cols=185 Identities=15% Similarity=0.123 Sum_probs=107.8
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhc----ccccceeehHHHHHHHhC--
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVIS----NFEKRMWNCESIIEALEG-- 247 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~l~~-- 247 (976)
.+++|.+...+.+..++... .-...+.++|..|+||||+|+.+.+...... ...|...-++..+..-..
T Consensus 17 ~~viGq~~~~~~L~~~i~~~-----~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN-----KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 47899999999999998742 2346788999999999999988876311000 000000000000000000
Q ss_pred ----CCCCcccHHHHHHHHHHH----HcCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEc-Cchhhhhc-cCC
Q 002044 248 ----FAPNLGELNSLLLRIDAF----IARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTT-RKETVARM-MES 317 (976)
Q Consensus 248 ----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~v~~~-~~~ 317 (976)
...+....+++...+.+. ..+++-++|+|++..-....++.+...+..-..++.+|++| +...+... ...
T Consensus 92 ~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SR 171 (614)
T PRK14971 92 IHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSR 171 (614)
T ss_pred eEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhh
Confidence 000111223332222211 12455588999996655556777888777655666666555 44444433 234
Q ss_pred cceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCch
Q 002044 318 TDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPL 367 (976)
Q Consensus 318 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 367 (976)
..++++.+++.++....+...+-..+.... .+.+..|++.++|..-
T Consensus 172 c~iv~f~~ls~~ei~~~L~~ia~~egi~i~----~~al~~La~~s~gdlr 217 (614)
T PRK14971 172 CQIFDFNRIQVADIVNHLQYVASKEGITAE----PEALNVIAQKADGGMR 217 (614)
T ss_pred hheeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHH
Confidence 678999999999999988876643222111 3345668999998664
No 116
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=0.0006 Score=77.91 Aligned_cols=189 Identities=14% Similarity=0.066 Sum_probs=110.4
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccch--hccc-ccceeehH-HHHHHHh---
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDV--ISNF-EKRMWNCE-SIIEALE--- 246 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~f-~~~~wv~~-~~~~~l~--- 246 (976)
.+++|-+...+.+...+... .-..+..++|..|+||||+|+.+++..-- ...+ .|...-.+ .+.....
T Consensus 14 deiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 57899999999999888632 23457789999999999999988763110 0011 11111001 1110000
Q ss_pred --CCCCCcccHHHHHHHHHHH----HcCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCch-hhhhc-cCCc
Q 002044 247 --GFAPNLGELNSLLLRIDAF----IARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKE-TVARM-MEST 318 (976)
Q Consensus 247 --~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~-~~~~ 318 (976)
.........+.....+... ..+++-++|+|++..-.....+.+...+......+++|++|.+. .+... ....
T Consensus 89 ~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc 168 (535)
T PRK08451 89 IEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRT 168 (535)
T ss_pred EEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhc
Confidence 0000111233333332221 11455689999996655556677777776655667777777653 22221 2335
Q ss_pred ceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHH
Q 002044 319 DVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKT 371 (976)
Q Consensus 319 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 371 (976)
..+++.+++.++..+.+.+.+-..+.... .+.+..|++.++|.+--+..
T Consensus 169 ~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~----~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 169 QHFRFKQIPQNSIISHLKTILEKEGVSYE----PEALEILARSGNGSLRDTLT 217 (535)
T ss_pred eeEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHH
Confidence 78999999999999988876643322222 34556799999998854433
No 117
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.76 E-value=0.00048 Score=72.86 Aligned_cols=160 Identities=14% Similarity=0.095 Sum_probs=80.0
Q ss_pred ccccchhHHHHHHHHHhcc--------c-ccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHH
Q 002044 175 EVRGRVEEKNALKSKLLCK--------S-SEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEAL 245 (976)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~--------~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l 245 (976)
.++|.+..+++|.+..... . -...+...-+.++|++|+||||+|+.+++...-...-....++.+.... +
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~-l 85 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD-L 85 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH-h
Confidence 5788877776665443211 0 0002345667899999999999999998731100100111122221111 1
Q ss_pred hCCCCCcccHHHHHHHHHHHHc-CCceEEEEcCCCCCC--------ccCcHhHHHhhcCCCCCcEEEEEcCchhhhh---
Q 002044 246 EGFAPNLGELNSLLLRIDAFIA-RKKFLLILDDVWTDD--------YSKWEPFRRCLINGHRESRILVTTRKETVAR--- 313 (976)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~--- 313 (976)
.+.... +. ...+.+.++ ...-+|++|++..-. ....+.+...+........+|+++.......
T Consensus 86 ~~~~~g--~~---~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~ 160 (261)
T TIGR02881 86 VGEYIG--HT---AQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLS 160 (261)
T ss_pred hhhhcc--ch---HHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHh
Confidence 111100 11 112222222 124589999995311 1122334444444333345566655433211
Q ss_pred ---cc-CC-cceEecCCCCHHHHHHHHHHHhc
Q 002044 314 ---MM-ES-TDVIFIKELSEQECWALFKRFAC 340 (976)
Q Consensus 314 ---~~-~~-~~~~~l~~L~~~~~~~Lf~~~~~ 340 (976)
.. .. ...+.+++++.++-.+++.+.+.
T Consensus 161 ~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 161 LNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred cChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 11 11 34688999999999999987763
No 118
>CHL00181 cbbX CbbX; Provisional
Probab=97.75 E-value=0.00072 Score=72.03 Aligned_cols=131 Identities=12% Similarity=0.113 Sum_probs=71.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcccchhcccc--cceeehH-HHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCC
Q 002044 202 QIISLVGMGGIGKTTLAQFAYNDEDVISNFE--KRMWNCE-SIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDDV 278 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~-~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv 278 (976)
..+.++|.+|+||||+|+.+++.......-. ..+.+.. ++...+.+.. . ......+.+ ...-+|++|++
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~----~-~~~~~~l~~---a~ggVLfIDE~ 131 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHT----A-PKTKEVLKK---AMGGVLFIDEA 131 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccc----h-HHHHHHHHH---ccCCEEEEEcc
Confidence 3578899999999999999977311111111 1233332 2333222211 0 111111222 23459999999
Q ss_pred CCC---------CccCcHhHHHhhcCCCCCcEEEEEcCchhhhhcc--------CCcceEecCCCCHHHHHHHHHHHhc
Q 002044 279 WTD---------DYSKWEPFRRCLINGHRESRILVTTRKETVARMM--------ESTDVIFIKELSEQECWALFKRFAC 340 (976)
Q Consensus 279 ~~~---------~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~--------~~~~~~~l~~L~~~~~~~Lf~~~~~ 340 (976)
..- ..+..+.+...+.....+.+||+++....+.... .....+.+++++.++..+++...+-
T Consensus 132 ~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~ 210 (287)
T CHL00181 132 YYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLE 210 (287)
T ss_pred chhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHH
Confidence 531 0112233444444444556777777654432211 1245799999999999999888763
No 119
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.00067 Score=77.62 Aligned_cols=187 Identities=14% Similarity=0.134 Sum_probs=106.6
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccch--hcc-cccceeehHHHHHHHhCCCC
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDV--ISN-FEKRMWNCESIIEALEGFAP 250 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~-f~~~~wv~~~~~~~l~~~~~ 250 (976)
.+++|.+...+.+..++... .-.....++|..|+||||+|+.++....- ... .+|....++..+. .+...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~-----~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~--~g~~~ 88 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQ-----RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEID--KGSFP 88 (486)
T ss_pred HHccChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHh--cCCCC
Confidence 46889999999999988642 23456778999999999999998763110 000 1121111110000 01100
Q ss_pred C--------cccHHHHHHHHHHHH-----cCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEc-Cchhhhhc-c
Q 002044 251 N--------LGELNSLLLRIDAFI-----ARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTT-RKETVARM-M 315 (976)
Q Consensus 251 ~--------~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~v~~~-~ 315 (976)
+ ....+. ++.+.+.. .+++-++|+|++..-.....+.+...+........+|++| +...+... .
T Consensus 89 d~~eidaas~~gvd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~ 167 (486)
T PRK14953 89 DLIEIDAASNRGIDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTIL 167 (486)
T ss_pred cEEEEeCccCCCHHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHH
Confidence 0 011221 22233332 3456699999996544445566777766555555665555 43333322 2
Q ss_pred CCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHH
Q 002044 316 ESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTI 372 (976)
Q Consensus 316 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 372 (976)
.....+.+.+++.++....+...+-..+.... .+.+..|++.++|.+-.+...
T Consensus 168 SRc~~i~f~~ls~~el~~~L~~i~k~egi~id----~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 168 SRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE----EKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred HhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 33568999999999998888876633222122 344556888899976544333
No 120
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.00063 Score=80.35 Aligned_cols=188 Identities=14% Similarity=0.126 Sum_probs=109.1
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccc-cceeehHHHHHHHhC-CCC-
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFE-KRMWNCESIIEALEG-FAP- 250 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~l~~-~~~- 250 (976)
.+++|.+..++.|..++... .-...+.++|..|+||||+|+.+++......... ...+-.......+.. ...
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~-----~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d 90 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEG-----RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVD 90 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCe
Confidence 57999999999998888742 1345678999999999999999987321111100 000000111111111 111
Q ss_pred -------CcccHHHHHHHHHHHH-----cCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCc-hhhhhc-cC
Q 002044 251 -------NLGELNSLLLRIDAFI-----ARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRK-ETVARM-ME 316 (976)
Q Consensus 251 -------~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~-~~ 316 (976)
.....++. +.+.+.+ .+++-++|+|++..-.....+.|...+......+.+|++|.+ ..+... ..
T Consensus 91 ~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~S 169 (585)
T PRK14950 91 VIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILS 169 (585)
T ss_pred EEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHh
Confidence 11122222 2222322 245668999999544444566677776665556666666643 333322 23
Q ss_pred CcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHH
Q 002044 317 STDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKT 371 (976)
Q Consensus 317 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 371 (976)
....+.+.+++.++....+...+...+.... .+.+..|++.++|.+..+..
T Consensus 170 R~~~i~f~~l~~~el~~~L~~~a~~egl~i~----~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 170 RCQRFDFHRHSVADMAAHLRKIAAAEGINLE----PGALEAIARAATGSMRDAEN 220 (585)
T ss_pred ccceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 3567889999999998888877643222122 34566799999998864443
No 121
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.69 E-value=0.00011 Score=81.10 Aligned_cols=101 Identities=17% Similarity=0.118 Sum_probs=63.1
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH----HHHHHHhCCC
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE----SIIEALEGFA 249 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~----~~~~~l~~~~ 249 (976)
.++++.+...+.+...|.. .+.|.++|++|+|||++|+.+++.......|+.+.||.+ +...-+.+..
T Consensus 175 ~d~~i~e~~le~l~~~L~~--------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 4678889999999999873 346788999999999999999885433446666777766 2222222221
Q ss_pred CCccc---HHH-HHHHHHHHHc--CCceEEEEcCCCCCC
Q 002044 250 PNLGE---LNS-LLLRIDAFIA--RKKFLLILDDVWTDD 282 (976)
Q Consensus 250 ~~~~~---~~~-~~~~l~~~l~--~k~~LlVlDdv~~~~ 282 (976)
+.... ... ..+.+..... ++++++|+|++...+
T Consensus 247 P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 247 PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC
Confidence 11111 111 1112222222 468999999996544
No 122
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.68 E-value=0.00015 Score=79.02 Aligned_cols=138 Identities=17% Similarity=0.279 Sum_probs=81.7
Q ss_pred CCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceEeCccccCCCcCcc
Q 002044 769 LQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMPALGILPSLEVLKIRFMKSVKRVGNEFLGTEISDH 848 (976)
Q Consensus 769 l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 848 (976)
+..+.+++.|++++|.+..+ |. -.++|+.|.+.+|..+..+|.. ..++|++|++++|..+..+|.. +..
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~Cs~L~sLP~s------Le~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGS-IPEGLEKLTVCHCPEISGLPES------VRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCch-hhhhhhheEccCcccccccccc------cce
Confidence 44457788888888866655 62 3457888888888777766642 1457888888888666655543 223
Q ss_pred cccccCCCCCCCCCccCccC-CccceeeecccccccccccCCCccccC-CCcceEeeecCCCCCCCCcCCCCCCCCCeEE
Q 002044 849 IHIQDGSMSSSSSSSANIAF-PKLKELKFFCLDEWEEWDFGKEDITIM-PQLSSMKISYCSKLNSLPDQLLQSTTLEELE 926 (976)
Q Consensus 849 l~l~~~~~~~~~~~~~~~~f-p~L~~L~l~~l~~l~~~~~~~~~~~~l-~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~ 926 (976)
+.+..+.... ...+ ++|+.|.+.+......+.. +. .+ ++|+.|++++|..+ .+|..+- .+|+.|.
T Consensus 117 L~L~~n~~~~------L~~LPssLk~L~I~~~n~~~~~~l-p~---~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ 183 (426)
T PRK15386 117 LEIKGSATDS------IKNVPNGLTSLSINSYNPENQARI-DN---LISPSLKTLSLTGCSNI-ILPEKLP--ESLQSIT 183 (426)
T ss_pred EEeCCCCCcc------cccCcchHhheecccccccccccc-cc---ccCCcccEEEecCCCcc-cCccccc--ccCcEEE
Confidence 3332221110 1123 3677777644221111111 10 23 58999999999855 4554432 5899999
Q ss_pred EccC
Q 002044 927 IIRC 930 (976)
Q Consensus 927 l~~c 930 (976)
++.+
T Consensus 184 ls~n 187 (426)
T PRK15386 184 LHIE 187 (426)
T ss_pred eccc
Confidence 8775
No 123
>PRK06620 hypothetical protein; Validated
Probab=97.68 E-value=0.00045 Score=70.15 Aligned_cols=129 Identities=13% Similarity=0.126 Sum_probs=74.6
Q ss_pred EEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCCCC
Q 002044 202 QIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDDVWTD 281 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~ 281 (976)
+.+.|+|++|+|||+|++.+++... . .++... .. .+ +.. +..-++++||+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~~~-----~~-------~~-------~~~-~~~d~lliDdi~-- 95 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIKDI-----FF-------NE-------EIL-EKYNAFIIEDIE-- 95 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcchh-----hh-------ch-------hHH-hcCCEEEEeccc--
Confidence 6789999999999999999887421 1 121100 00 00 111 233578899994
Q ss_pred CccCcH--hHHHhhcC-CCCCcEEEEEcCchhh-------hhccCCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhH
Q 002044 282 DYSKWE--PFRRCLIN-GHRESRILVTTRKETV-------ARMMESTDVIFIKELSEQECWALFKRFACFGRSLSECEQL 351 (976)
Q Consensus 282 ~~~~~~--~l~~~l~~-~~~gs~iivTtR~~~v-------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~ 351 (976)
.|. .+...+.. ...|..||+|++.... ...+....++++++++.++-.+++.+.+... ....+
T Consensus 96 ---~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~-~l~l~--- 168 (214)
T PRK06620 96 ---NWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS-SVTIS--- 168 (214)
T ss_pred ---cchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc-CCCCC---
Confidence 222 12222111 1346689999985432 2223345589999999999888887766321 11111
Q ss_pred HHHHHHHHhhcCCCc
Q 002044 352 EEIGKKIVGKCKGLP 366 (976)
Q Consensus 352 ~~~~~~i~~~c~GlP 366 (976)
+++.+-|++++.|--
T Consensus 169 ~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 169 RQIIDFLLVNLPREY 183 (214)
T ss_pred HHHHHHHHHHccCCH
Confidence 444555666666544
No 124
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.66 E-value=0.00039 Score=76.25 Aligned_cols=144 Identities=15% Similarity=0.145 Sum_probs=84.3
Q ss_pred CCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCCCc
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAPNL 252 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~~~ 252 (976)
-.+++|.+...+.+..++... .-..++.++|.+|+||||+|+.+++. ....| ..+.. ..
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~--~~~~~---~~i~~--------~~--- 78 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNE--VGAEV---LFVNG--------SD--- 78 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH--hCccc---eEecc--------Cc---
Confidence 357899999999999988632 23567888999999999999999883 22221 12111 00
Q ss_pred ccHHHHHHHHHHHH-----cCCceEEEEcCCCCC-CccCcHhHHHhhcCCCCCcEEEEEcCchh-hhhc-cCCcceEecC
Q 002044 253 GELNSLLLRIDAFI-----ARKKFLLILDDVWTD-DYSKWEPFRRCLINGHRESRILVTTRKET-VARM-MESTDVIFIK 324 (976)
Q Consensus 253 ~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~-~~~~~~~~l~ 324 (976)
...+.....+.... .+.+-++|+|++... .....+.+...+.....++++|+||.... +... ......+.++
T Consensus 79 ~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~ 158 (316)
T PHA02544 79 CRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFG 158 (316)
T ss_pred ccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeC
Confidence 11121112222221 234568999999543 11222334444544456678999887532 1111 1223467777
Q ss_pred CCCHHHHHHHHHH
Q 002044 325 ELSEQECWALFKR 337 (976)
Q Consensus 325 ~L~~~~~~~Lf~~ 337 (976)
..+.++..+++..
T Consensus 159 ~p~~~~~~~il~~ 171 (316)
T PHA02544 159 VPTKEEQIEMMKQ 171 (316)
T ss_pred CCCHHHHHHHHHH
Confidence 7777777666543
No 125
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.65 E-value=0.0007 Score=76.73 Aligned_cols=156 Identities=16% Similarity=0.116 Sum_probs=86.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhccc--ccceeehH-HHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcC
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNF--EKRMWNCE-SIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDD 277 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~-~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDd 277 (976)
...+.|+|..|+|||+|++.+++ ...... ..++|++. ++...+...... .. ...+.+.+++ .-+|||||
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~~~~~~~~~~~~~~~-~~----~~~~~~~~~~-~dlLiiDD 207 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYVSSEKFTNDFVNALRN-NK----MEEFKEKYRS-VDLLLIDD 207 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEEEHHHHHHHHHHHHHc-CC----HHHHHHHHHh-CCEEEEeh
Confidence 35689999999999999999998 343332 23556665 222222110000 11 2223333433 34888999
Q ss_pred CCCCCcc-Cc-HhHHHhhcC-CCCCcEEEEEcCchh---------hhhccCCcceEecCCCCHHHHHHHHHHHhcCCCCC
Q 002044 278 VWTDDYS-KW-EPFRRCLIN-GHRESRILVTTRKET---------VARMMESTDVIFIKELSEQECWALFKRFACFGRSL 345 (976)
Q Consensus 278 v~~~~~~-~~-~~l~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 345 (976)
+...... .+ +.+...+.. ...|..||+||.... +...+....++.+++.+.++-.+++...+-.....
T Consensus 208 i~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~ 287 (405)
T TIGR00362 208 IQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLE 287 (405)
T ss_pred hhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence 9542111 11 122222221 123456888886421 22223334579999999999999999887432221
Q ss_pred CcchhHHHHHHHHHhhcCCCchH
Q 002044 346 SECEQLEEIGKKIVGKCKGLPLA 368 (976)
Q Consensus 346 ~~~~~~~~~~~~i~~~c~GlPLa 368 (976)
-+ +++...|++.+.|..-.
T Consensus 288 l~----~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 288 LP----DEVLEFIAKNIRSNVRE 306 (405)
T ss_pred CC----HHHHHHHHHhcCCCHHH
Confidence 12 45556677777776553
No 126
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.65 E-value=0.001 Score=77.48 Aligned_cols=187 Identities=15% Similarity=0.124 Sum_probs=108.8
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhc---cccccee-ehHHHHHHHh---
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVIS---NFEKRMW-NCESIIEALE--- 246 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~f~~~~w-v~~~~~~~l~--- 246 (976)
.+++|-+..++.+..++... .-.+.+.++|..|+||||+|+.+++...... .+.|... .|..+...-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~-----~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv 90 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN-----KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDV 90 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCe
Confidence 57899999999999998742 2346788999999999999999987321111 1111111 1111110000
Q ss_pred -CCC-CCcccHHHHHH---HHHH-HHcCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCc-hhhhhc-cCCc
Q 002044 247 -GFA-PNLGELNSLLL---RIDA-FIARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRK-ETVARM-MEST 318 (976)
Q Consensus 247 -~~~-~~~~~~~~~~~---~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~-~~~~ 318 (976)
... .....+++... .+.. -..+++-++|+|++..-....++.+...+......+.+|++|.. ..+... ....
T Consensus 91 ~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc 170 (563)
T PRK06647 91 IEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRC 170 (563)
T ss_pred EEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhc
Confidence 000 00112222222 1111 12356668999999655445567777777655556666666543 333322 2335
Q ss_pred ceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHH
Q 002044 319 DVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAA 369 (976)
Q Consensus 319 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 369 (976)
..++..+++.++..+.+...+...+.... .+.+..|++.++|.+-.+
T Consensus 171 ~~~~f~~l~~~el~~~L~~i~~~egi~id----~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 171 QHFNFRLLSLEKIYNMLKKVCLEDQIKYE----DEALKWIAYKSTGSVRDA 217 (563)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 67899999999998888877643322222 344556888999977543
No 127
>PF14516 AAA_35: AAA-like domain
Probab=97.63 E-value=0.0083 Score=65.66 Aligned_cols=191 Identities=14% Similarity=0.116 Sum_probs=105.7
Q ss_pred cCCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH------------
Q 002044 172 DLSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE------------ 239 (976)
Q Consensus 172 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~------------ 239 (976)
+.+..|.|...-+++.+.+.. .-..+.|.|+-.+|||+|...+.+..+- ..|. +++++.
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~-------~G~~~~I~apRq~GKTSll~~l~~~l~~-~~~~-~v~id~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQ-------PGSYIRIKAPRQMGKTSLLLRLLERLQQ-QGYR-CVYIDLQQLGSAIFSDLE 79 (331)
T ss_pred CCCcccCchHHHHHHHHHHhc-------CCCEEEEECcccCCHHHHHHHHHHHHHH-CCCE-EEEEEeecCCCcccCCHH
Confidence 345577898666777777753 2358999999999999999988763211 1222 223322
Q ss_pred --------HHHHHHhCCCC-------CcccHHHHHHHHHHHH-c--CCceEEEEcCCCCCC--ccCcHhHHH---hhcCC
Q 002044 240 --------SIIEALEGFAP-------NLGELNSLLLRIDAFI-A--RKKFLLILDDVWTDD--YSKWEPFRR---CLING 296 (976)
Q Consensus 240 --------~~~~~l~~~~~-------~~~~~~~~~~~l~~~l-~--~k~~LlVlDdv~~~~--~~~~~~l~~---~l~~~ 296 (976)
.+..++.-... ..........-+.+++ . +++.+|++|+|..-- ..-.+.+.. .+...
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~ 159 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQ 159 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHh
Confidence 22222221110 0111122233343432 2 689999999995311 111122222 22111
Q ss_pred -C----CCc-EEEEEcCchh--hhh----ccCCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCC
Q 002044 297 -H----RES-RILVTTRKET--VAR----MMESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKG 364 (976)
Q Consensus 297 -~----~gs-~iivTtR~~~--v~~----~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G 364 (976)
. ..+ ++++....+. ... .......++|++++.+|...|....-.. .. ....++|...+||
T Consensus 160 ~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~----~~----~~~~~~l~~~tgG 231 (331)
T PF14516_consen 160 RKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE----FS----QEQLEQLMDWTGG 231 (331)
T ss_pred cccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc----CC----HHHHHHHHHHHCC
Confidence 1 111 1222221111 111 1122457999999999999999876311 11 1227779999999
Q ss_pred CchHHHHHhhhhccC
Q 002044 365 LPLAAKTIGSLLRFK 379 (976)
Q Consensus 365 lPLai~~~~~~l~~~ 379 (976)
+|..+..++..+..+
T Consensus 232 hP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 232 HPYLVQKACYLLVEE 246 (331)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999998653
No 128
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.62 E-value=0.00066 Score=78.15 Aligned_cols=152 Identities=11% Similarity=0.082 Sum_probs=85.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcccchhccc--ccceeehH-HHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCC
Q 002044 202 QIISLVGMGGIGKTTLAQFAYNDEDVISNF--EKRMWNCE-SIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDDV 278 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~-~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv 278 (976)
..+.|+|..|+|||.|++.+++ .....+ ..+.|+.. .+...+...... . ....+++.+.+ -=+|||||+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yitaeef~~el~~al~~-~----~~~~f~~~y~~-~DLLlIDDI 386 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYVSSEEFTNEFINSIRD-G----KGDSFRRRYRE-MDILLVDDI 386 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHHHHHHHHHHHHHh-c----cHHHHHHHhhc-CCEEEEehh
Confidence 3589999999999999999998 343322 23566665 233232211000 0 11223333333 347889999
Q ss_pred CCCCc-cCcHh-HHHhhcC-CCCCcEEEEEcCch---------hhhhccCCcceEecCCCCHHHHHHHHHHHhcCCCCCC
Q 002044 279 WTDDY-SKWEP-FRRCLIN-GHRESRILVTTRKE---------TVARMMESTDVIFIKELSEQECWALFKRFACFGRSLS 346 (976)
Q Consensus 279 ~~~~~-~~~~~-l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~ 346 (976)
..... ..|+. +...+.. ...|..|||||+.. .+...+...-++.+++.+.+.-.+++.+.+....-..
T Consensus 387 q~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l 466 (617)
T PRK14086 387 QFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNA 466 (617)
T ss_pred ccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 54321 22222 2222221 12345699998852 2333345567899999999999999998874332212
Q ss_pred cchhHHHHHHHHHhhcCCC
Q 002044 347 ECEQLEEIGKKIVGKCKGL 365 (976)
Q Consensus 347 ~~~~~~~~~~~i~~~c~Gl 365 (976)
. .++.+-|++.+.+.
T Consensus 467 ~----~eVi~yLa~r~~rn 481 (617)
T PRK14086 467 P----PEVLEFIASRISRN 481 (617)
T ss_pred C----HHHHHHHHHhccCC
Confidence 2 34444566665544
No 129
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.62 E-value=0.0011 Score=71.75 Aligned_cols=204 Identities=13% Similarity=0.091 Sum_probs=117.7
Q ss_pred ccCCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-----------
Q 002044 171 IDLSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE----------- 239 (976)
Q Consensus 171 ~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~----------- 239 (976)
..+..++||+.++..+.+++...-+ ....+-+.|.|.+|.|||.+...++.+..-...-..++++..
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 3456799999999999999986554 456778999999999999999999885322111123345443
Q ss_pred HHHHHHhCCCCCcccHHHHHHHHHHHHcCC--ceEEEEcCCCCCCccCcHhHHHhhcC-CCCCcEEEEEcCch--h----
Q 002044 240 SIIEALEGFAPNLGELNSLLLRIDAFIARK--KFLLILDDVWTDDYSKWEPFRRCLIN-GHRESRILVTTRKE--T---- 310 (976)
Q Consensus 240 ~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtR~~--~---- 310 (976)
.|...+...........+....+.+..... -+|+|+|.++.-....-..+...+.+ .-+++|+|+.---. +
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 333333111111111133445555555443 68999999843111111122222222 23556665543211 1
Q ss_pred -hhhc----cCCcceEecCCCCHHHHHHHHHHHhcCCCCC-CcchhHHHHHHHHHhhcCCCchHHHHHhhhh
Q 002044 311 -VARM----MESTDVIFIKELSEQECWALFKRFACFGRSL-SECEQLEEIGKKIVGKCKGLPLAAKTIGSLL 376 (976)
Q Consensus 311 -v~~~----~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~-~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 376 (976)
+... ......+..+|-+.++-.++|..+....... ..+...+-.|++++...|.+--|+.+.-+.+
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 1111 1124578889999999999999887433222 2234556666666666666667766665544
No 130
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.61 E-value=0.00056 Score=77.42 Aligned_cols=133 Identities=20% Similarity=0.150 Sum_probs=75.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHH-HHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCC
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCES-IIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDDVW 279 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 279 (976)
..-+.|+|..|+|||+|++.+++. +......+++++.. +...+..... .. ....+++.++ ..-+|++||+.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~~~~f~~~~~~~l~-~~----~~~~f~~~~~-~~dvLiIDDiq 212 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVRSELFTEHLVSAIR-SG----EMQRFRQFYR-NVDALFIEDIE 212 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEeeHHHHHHHHHHHHh-cc----hHHHHHHHcc-cCCEEEEcchh
Confidence 356889999999999999999983 43333445666652 2111111000 00 1122333333 34588889985
Q ss_pred CCCccCc--HhHHHhhcC-CCCCcEEEEEcCch---------hhhhccCCcceEecCCCCHHHHHHHHHHHhcC
Q 002044 280 TDDYSKW--EPFRRCLIN-GHRESRILVTTRKE---------TVARMMESTDVIFIKELSEQECWALFKRFACF 341 (976)
Q Consensus 280 ~~~~~~~--~~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 341 (976)
......+ +.+...+.. ...|..||+||... .+...+....++.+++++.++-.+++.+.+-.
T Consensus 213 ~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 213 VFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred hhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 4221111 222222211 11345788888642 12222334568999999999999999887743
No 131
>PLN03150 hypothetical protein; Provisional
Probab=97.61 E-value=0.00011 Score=87.60 Aligned_cols=88 Identities=25% Similarity=0.449 Sum_probs=59.2
Q ss_pred cceEEecCcccccCCCC-cccCccccCCCccceecC--cccc-ccCccccccCCccEEecCCCCCCcccchhhcccCCCc
Q 002044 582 LRVLRIEGMKSLIGSGT-NEIPKGIKKLRHLRYLKL--YLVE-KLPETCCELLNLQTLNMCGSPGLKRLPQGIGKLINLR 657 (976)
Q Consensus 582 Lr~L~L~~~~~l~~~~~-~~lp~~i~~L~~Lr~L~L--~~~~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~ 657 (976)
++.|+|++ +.+ ..+|..+++|.+|++|+| +.+. .+|..++.+.+|++|+|++|.....+|..+++|++|+
T Consensus 420 v~~L~L~~------n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~ 493 (623)
T PLN03150 420 IDGLGLDN------QGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493 (623)
T ss_pred EEEEECCC------CCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC
Confidence 56666663 333 246677777777777777 3343 6777777777777788777764456777777777788
Q ss_pred EEEecccccc-cCcccccC
Q 002044 658 HLMFEVDYLE-YMPKGIER 675 (976)
Q Consensus 658 ~L~l~~~~l~-~lp~~i~~ 675 (976)
+|++++|.+. .+|..++.
T Consensus 494 ~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 494 ILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred EEECcCCcccccCChHHhh
Confidence 8877666655 56666554
No 132
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.59 E-value=0.00013 Score=75.48 Aligned_cols=79 Identities=19% Similarity=0.068 Sum_probs=50.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH---------HHHHHHhC----CCCCcccHH------HHHH
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE---------SIIEALEG----FAPNLGELN------SLLL 260 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---------~~~~~l~~----~~~~~~~~~------~~~~ 260 (976)
.-..++|+|.+|+|||||+++++++.... +|+.++|+.+ ++.+.+.. ...+..... ....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 34578999999999999999999965443 8999999874 45555511 111111111 1122
Q ss_pred HHHHH-HcCCceEEEEcCCC
Q 002044 261 RIDAF-IARKKFLLILDDVW 279 (976)
Q Consensus 261 ~l~~~-l~~k~~LlVlDdv~ 279 (976)
..... -.++++++++|++.
T Consensus 94 ~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHCCCCEEEEEECHH
Confidence 22222 24789999999993
No 133
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.58 E-value=3.4e-06 Score=86.99 Aligned_cols=93 Identities=18% Similarity=0.198 Sum_probs=53.2
Q ss_pred HHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecCc------cccccCcc-------ccccCCccEEecCC
Q 002044 573 QGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKLY------LVEKLPET-------CCELLNLQTLNMCG 639 (976)
Q Consensus 573 ~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L~------~~~~lp~~-------i~~L~~L~~L~l~~ 639 (976)
......+..+..|+|+|++--+ -....+.+.+.+.++|+.-+++ ...++|+. +-..++|++|||+.
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~-EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGT-EAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHhcccCceEEEeccCCchhH-HHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 3446788899999999543100 0012344566777788888883 23345543 33455788888877
Q ss_pred CCCCcccc----hhhcccCCCcEEEeccccc
Q 002044 640 SPGLKRLP----QGIGKLINLRHLMFEVDYL 666 (976)
Q Consensus 640 ~~~l~~lp----~~i~~l~~L~~L~l~~~~l 666 (976)
|..=..-+ .-+.++..|+||++.++.+
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl 132 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGL 132 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence 75111122 2245566666666655444
No 134
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.58 E-value=0.003 Score=63.66 Aligned_cols=126 Identities=21% Similarity=0.270 Sum_probs=72.6
Q ss_pred ccCCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCC
Q 002044 171 IDLSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAP 250 (976)
Q Consensus 171 ~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~ 250 (976)
+...+++|.+..++.|++-...--. .....-|-+||..|.|||++++++.+. ....-=..+-|. ..
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~--G~pannvLL~G~rGtGKSSlVkall~~--y~~~GLRlIev~----------k~ 89 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQ--GLPANNVLLWGARGTGKSSLVKALLNE--YADQGLRLIEVS----------KE 89 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHc--CCCCcceEEecCCCCCHHHHHHHHHHH--HhhcCceEEEEC----------HH
Confidence 3446799999998888765432222 224456778999999999999999873 222111111111 12
Q ss_pred CcccHHHHHHHHHHHHcCCceEEEEcCCCC-CCccCcHhHHHhhcCC---CC-CcEEEEEcCchhhh
Q 002044 251 NLGELNSLLLRIDAFIARKKFLLILDDVWT-DDYSKWEPFRRCLING---HR-ESRILVTTRKETVA 312 (976)
Q Consensus 251 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~---~~-gs~iivTtR~~~v~ 312 (976)
+..++..+...++. ...||+|++||+.- ++...+..++..+..+ .+ ...|..||..+++.
T Consensus 90 ~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 90 DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 22333344444432 35699999999843 2334566676666543 22 33445555544443
No 135
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.57 E-value=0.00096 Score=69.48 Aligned_cols=190 Identities=17% Similarity=0.104 Sum_probs=112.4
Q ss_pred Cccccc---hhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccc------cceeehH-----
Q 002044 174 SEVRGR---VEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFE------KRMWNCE----- 239 (976)
Q Consensus 174 ~~~~Gr---~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~------~~~wv~~----- 239 (976)
+.++|- .+.++++.+++..+. ....+-+.|||.+|+|||++++++...- -..++ .++.|..
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~h--p~~~d~~~~~~PVv~vq~P~~p~ 108 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLH--PPQSDEDAERIPVVYVQMPPEPD 108 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHC--CCCCCCCCccccEEEEecCCCCC
Confidence 345554 345667777777654 4577889999999999999999998631 11121 1233322
Q ss_pred ------HHHHHHhCCCCCcccHHHHHHHHHHHHcCC-ceEEEEcCCCCC------CccCcHhHHHhhcCCCCCcEEEEEc
Q 002044 240 ------SIIEALEGFAPNLGELNSLLLRIDAFIARK-KFLLILDDVWTD------DYSKWEPFRRCLINGHRESRILVTT 306 (976)
Q Consensus 240 ------~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~------~~~~~~~l~~~l~~~~~gs~iivTt 306 (976)
.|++.+....................++.- --+||+|.+.+- .....-.....+.+.-.=+-|.+.|
T Consensus 109 ~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt 188 (302)
T PF05621_consen 109 ERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGT 188 (302)
T ss_pred hHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEecc
Confidence 777887766555566666666666777654 448999999541 1122233334454444456677777
Q ss_pred Cchhhhhc-----cCCcceEecCCCCHHH-HHHHHHHHh--cCCCCCCcchhHHHHHHHHHhhcCCCchHH
Q 002044 307 RKETVARM-----MESTDVIFIKELSEQE-CWALFKRFA--CFGRSLSECEQLEEIGKKIVGKCKGLPLAA 369 (976)
Q Consensus 307 R~~~v~~~-----~~~~~~~~l~~L~~~~-~~~Lf~~~~--~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 369 (976)
+...-+-. .....++.+...+.++ ...|+.... .+-..... -...++++.|...++|+.=-+
T Consensus 189 ~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~-l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 189 REAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSN-LASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHHHHcCCchHHH
Confidence 65432211 1224567777776554 444554321 11122111 234678899999999986433
No 136
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.57 E-value=0.0013 Score=72.03 Aligned_cols=165 Identities=17% Similarity=0.133 Sum_probs=94.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchhcccc--cceeehH-HHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVISNFE--KRMWNCE-SIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILD 276 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~-~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlD 276 (976)
....+.|||..|.|||.|++++.+ ......+ .+++++. .....+... -.+.....+++.. .-=++++|
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~se~f~~~~v~a-----~~~~~~~~Fk~~y--~~dlllID 182 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLTSEDFTNDFVKA-----LRDNEMEKFKEKY--SLDLLLID 182 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEeccHHHHHHHHHHH-----HHhhhHHHHHHhh--ccCeeeec
Confidence 467899999999999999999999 5555555 3445544 111111100 0012334455555 34488899
Q ss_pred CCCCCC-ccCcHh-HHHhhcC-CCCCcEEEEEcCch---------hhhhccCCcceEecCCCCHHHHHHHHHHHhcCCCC
Q 002044 277 DVWTDD-YSKWEP-FRRCLIN-GHRESRILVTTRKE---------TVARMMESTDVIFIKELSEQECWALFKRFACFGRS 344 (976)
Q Consensus 277 dv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~ 344 (976)
|++.-. .+.|+. +...+.. ...|-.||+|++.. ++...+...-++++.+.+.+...+.+.+.+....-
T Consensus 183 Diq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~ 262 (408)
T COG0593 183 DIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGI 262 (408)
T ss_pred hHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCC
Confidence 995421 112222 2222221 12333899999642 33344455679999999999999999987644333
Q ss_pred CCcchhHHHHHHHHHhhcCCCchHHHHHh
Q 002044 345 LSECEQLEEIGKKIVGKCKGLPLAAKTIG 373 (976)
Q Consensus 345 ~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 373 (976)
..+++...-++.++.+-..-+.-|+..+.
T Consensus 263 ~i~~ev~~~la~~~~~nvReLegaL~~l~ 291 (408)
T COG0593 263 EIPDEVLEFLAKRLDRNVRELEGALNRLD 291 (408)
T ss_pred CCCHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 33444444445544444444444554443
No 137
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.57 E-value=0.00086 Score=67.86 Aligned_cols=176 Identities=23% Similarity=0.222 Sum_probs=99.6
Q ss_pred CCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCCCc
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAPNL 252 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~~~ 252 (976)
-.+|+|.++-++.+.=.+...... .+.+--|.++|++|.||||||.-+++. ....+.... .+..
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r-~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~k~ts-------------Gp~l 88 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKR-GEALDHVLLFGPPGLGKTTLAHIIANE--LGVNLKITS-------------GPAL 88 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhc-CCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCeEecc-------------cccc
Confidence 357999998888887766644322 345667899999999999999999994 333322100 0111
Q ss_pred ccHHHHHHHHHHHHcCCceEEEEcCCCCCCccCcHhHHHhhcC--------CCCCcE-----------EEEEcCchhhhh
Q 002044 253 GELNSLLLRIDAFIARKKFLLILDDVWTDDYSKWEPFRRCLIN--------GHRESR-----------ILVTTRKETVAR 313 (976)
Q Consensus 253 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~--------~~~gs~-----------iivTtR~~~v~~ 313 (976)
....++.. +...|+ +.=.+++|.+..-.+..-+.+-..+.+ .++++| |=-|||.-.+..
T Consensus 89 eK~gDlaa-iLt~Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~ 166 (332)
T COG2255 89 EKPGDLAA-ILTNLE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTN 166 (332)
T ss_pred cChhhHHH-HHhcCC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccc
Confidence 11111111 111122 334556677754322111111111111 123333 345788655554
Q ss_pred ccCC--cceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHH
Q 002044 314 MMES--TDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAK 370 (976)
Q Consensus 314 ~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 370 (976)
.... .-+.+++.-+.+|-.+...+.+..-.. +--++-+.+|+++..|-|--..
T Consensus 167 PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i----~i~~~~a~eIA~rSRGTPRIAn 221 (332)
T COG2255 167 PLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI----EIDEEAALEIARRSRGTPRIAN 221 (332)
T ss_pred hhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC----CCChHHHHHHHHhccCCcHHHH
Confidence 4322 457888999999999999887632222 1224567779999999996433
No 138
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.57 E-value=0.00063 Score=72.52 Aligned_cols=129 Identities=13% Similarity=0.120 Sum_probs=69.9
Q ss_pred EEEEEecCCchHHHHHHHHhcccchhcccc--cceeehH-HHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCC
Q 002044 203 IISLVGMGGIGKTTLAQFAYNDEDVISNFE--KRMWNCE-SIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDDVW 279 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~-~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 279 (976)
-+.++|.+|+||||+|+.++.......... ..+.+.. ++...+.+.. .......+.+ -..-+|+||++.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~-----~~~~~~~~~~---a~~gvL~iDEi~ 131 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHT-----APKTKEILKR---AMGGVLFIDEAY 131 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccc-----hHHHHHHHHH---ccCcEEEEechh
Confidence 478999999999999987766211111111 1222332 2322222211 1111112222 134689999994
Q ss_pred CC----C-----ccCcHhHHHhhcCCCCCcEEEEEcCchhhhhcc--------CCcceEecCCCCHHHHHHHHHHHh
Q 002044 280 TD----D-----YSKWEPFRRCLINGHRESRILVTTRKETVARMM--------ESTDVIFIKELSEQECWALFKRFA 339 (976)
Q Consensus 280 ~~----~-----~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~--------~~~~~~~l~~L~~~~~~~Lf~~~~ 339 (976)
.- + ...++.+...+.....+.+||+++......... .....+++++++.+|-.+++...+
T Consensus 132 ~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l 208 (284)
T TIGR02880 132 YLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLML 208 (284)
T ss_pred hhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHH
Confidence 21 0 112334455555555566777776543322211 113578999999999999998876
No 139
>PLN03150 hypothetical protein; Provisional
Probab=97.57 E-value=8.2e-05 Score=88.67 Aligned_cols=85 Identities=25% Similarity=0.344 Sum_probs=59.3
Q ss_pred ccceecC--ccc-cccCccccccCCccEEecCCCCCCcccchhhcccCCCcEEEecccccc-cCcccccCCCCCCcCCce
Q 002044 610 HLRYLKL--YLV-EKLPETCCELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLE-YMPKGIERLTSLRTLSEF 685 (976)
Q Consensus 610 ~Lr~L~L--~~~-~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~~~ 685 (976)
.++.|+| +.+ ..+|..+++|.+|+.|+|++|.....+|..++.+++|+.|++++|.+. .+|..++++++|+.|++.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3566677 233 357777888888888888888744577877888888888888777766 567778888888887765
Q ss_pred EEecCCCCCC
Q 002044 686 VVVNGSGKYG 695 (976)
Q Consensus 686 ~~~~~~~~~~ 695 (976)
.+. ..+..|
T Consensus 499 ~N~-l~g~iP 507 (623)
T PLN03150 499 GNS-LSGRVP 507 (623)
T ss_pred CCc-ccccCC
Confidence 544 444333
No 140
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.56 E-value=0.00053 Score=80.74 Aligned_cols=188 Identities=13% Similarity=0.100 Sum_probs=107.1
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhccc-----cc-ceeehHHHHHHHhC
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNF-----EK-RMWNCESIIEALEG 247 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-----~~-~~wv~~~~~~~l~~ 247 (976)
.+++|.+...+.|..++.... -...+.++|..|+||||+|+.+++...-.... .| .+..|..+......
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~ 90 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNAL 90 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCc
Confidence 478999999999999887422 23567899999999999999998742111000 11 11111111100000
Q ss_pred -----CCCCcccHHHHHHHHHHHH-----cCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCc-hhhhhc-c
Q 002044 248 -----FAPNLGELNSLLLRIDAFI-----ARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRK-ETVARM-M 315 (976)
Q Consensus 248 -----~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~-~ 315 (976)
.......++...+.+ +.+ .+++-++|+|++..-....++.|...+........+|++|.+ ..+... .
T Consensus 91 D~~ei~~~~~~~vd~IReii-~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIr 169 (620)
T PRK14948 91 DVIEIDAASNTGVDNIRELI-ERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTII 169 (620)
T ss_pred cEEEEeccccCCHHHHHHHH-HHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHH
Confidence 000111222222222 222 245568999999654445667777777654455555555543 333322 2
Q ss_pred CCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHH
Q 002044 316 ESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKT 371 (976)
Q Consensus 316 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 371 (976)
.....+.+..++.++....+.+.+...+.... .+.+..|++.++|.+..+..
T Consensus 170 SRc~~~~f~~l~~~ei~~~L~~ia~kegi~is----~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 170 SRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE----PEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred hheeEEEecCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 33567888999999988888776532221111 23466799999998754443
No 141
>PRK08116 hypothetical protein; Validated
Probab=97.56 E-value=0.00016 Score=76.29 Aligned_cols=103 Identities=21% Similarity=0.204 Sum_probs=59.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-HHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCCC
Q 002044 202 QIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDDVWT 280 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 280 (976)
..+.++|.+|+|||.||..+++. ...+...++++++ +++..+........ ......+.+.+.+-. ||||||+..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~~~~ll~~i~~~~~~~~--~~~~~~~~~~l~~~d-lLviDDlg~ 189 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVNFPQLLNRIKSTYKSSG--KEDENEIIRSLVNAD-LLILDDLGA 189 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHHHHHHHhccc--cccHHHHHHHhcCCC-EEEEecccC
Confidence 45899999999999999999994 4333344566665 44544432211110 111223344444444 899999965
Q ss_pred CCccCcHh--HHHhhcC-CCCCcEEEEEcCch
Q 002044 281 DDYSKWEP--FRRCLIN-GHRESRILVTTRKE 309 (976)
Q Consensus 281 ~~~~~~~~--l~~~l~~-~~~gs~iivTtR~~ 309 (976)
+...+|.. +...+.. -..|..+||||...
T Consensus 190 e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 190 ERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 44455543 2222221 13456799999743
No 142
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.54 E-value=0.00042 Score=83.15 Aligned_cols=156 Identities=18% Similarity=0.183 Sum_probs=88.9
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcc-----cccceeehHHHHHHHhCC
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISN-----FEKRMWNCESIIEALEGF 248 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~~~~~~l~~~ 248 (976)
..++||+.+++++++.|.... ..-+.++|.+|+|||++|+.++... +... .++.+|.. ++...+.+.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i-~~~~vP~~l~~~~~~~l-~~~~llaG~ 257 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRI-VQGDVPEVMADCTIYSL-DIGSLLAGT 257 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHH-HhcCCCchhcCCeEEec-cHHHHhccc
Confidence 358999999999999987532 2234689999999999999998731 1111 13344432 111112111
Q ss_pred CCCcccHHHHHHHHHHHH-cCCceEEEEcCCCCC--------CccCcHhHHHhhcCCCCCcEEEEEcCchhhhhc-----
Q 002044 249 APNLGELNSLLLRIDAFI-ARKKFLLILDDVWTD--------DYSKWEPFRRCLINGHRESRILVTTRKETVARM----- 314 (976)
Q Consensus 249 ~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~----- 314 (976)
....+.+.....+.+.+ +.++.+|++|++..- ...+...+..++...+ .-++|-+|........
T Consensus 258 -~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~E~~~~~~~D~ 335 (758)
T PRK11034 258 -KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQEFSNIFEKDR 335 (758)
T ss_pred -chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChHHHHHHhhccH
Confidence 11223334444444444 346789999999521 1112222233222222 2355555554432211
Q ss_pred --cCCcceEecCCCCHHHHHHHHHHHh
Q 002044 315 --MESTDVIFIKELSEQECWALFKRFA 339 (976)
Q Consensus 315 --~~~~~~~~l~~L~~~~~~~Lf~~~~ 339 (976)
......+.+++.+.++..+++....
T Consensus 336 AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 336 ALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1234589999999999999998643
No 143
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.54 E-value=9e-05 Score=53.50 Aligned_cols=40 Identities=23% Similarity=0.401 Sum_probs=30.2
Q ss_pred CCccEEecCCCCCCcccchhhcccCCCcEEEecccccccCc
Q 002044 630 LNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLEYMP 670 (976)
Q Consensus 630 ~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lp 670 (976)
++|++|++++|. +..+|..+++|++|+.|++++|.++.+|
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 468888888886 8888877888888888888887777654
No 144
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.53 E-value=0.0003 Score=65.84 Aligned_cols=95 Identities=19% Similarity=0.066 Sum_probs=50.6
Q ss_pred EEEEecCCchHHHHHHHHhcccchhcccccceeehH-HHHHHHhCCCCCcccHHHHHHHHHHHHcCC-ceEEEEcCCCCC
Q 002044 204 ISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SIIEALEGFAPNLGELNSLLLRIDAFIARK-KFLLILDDVWTD 281 (976)
Q Consensus 204 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~ 281 (976)
|.|+|.+|+||||+|+.+++. ...+| +.+.. .+. . .........+...+.+.-... +.+|++||+..-
T Consensus 1 ill~G~~G~GKT~l~~~la~~--l~~~~---~~i~~~~~~----~-~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l 70 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY--LGFPF---IEIDGSELI----S-SYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKL 70 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH--TTSEE---EEEETTHHH----T-SSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGT
T ss_pred CEEECcCCCCeeHHHHHHHhh--ccccc---ccccccccc----c-ccccccccccccccccccccccceeeeeccchhc
Confidence 579999999999999999994 33222 22222 111 0 011112222333333332333 799999999432
Q ss_pred CccC-----------cHhHHHhhcCCC---CCcEEEEEcCc
Q 002044 282 DYSK-----------WEPFRRCLINGH---RESRILVTTRK 308 (976)
Q Consensus 282 ~~~~-----------~~~l~~~l~~~~---~gs~iivTtR~ 308 (976)
.... ...+...+.... .+..||.||..
T Consensus 71 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 71 FPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp SHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred ccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 2222 233444444332 23567777765
No 145
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.53 E-value=0.00066 Score=83.93 Aligned_cols=154 Identities=16% Similarity=0.182 Sum_probs=86.4
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhccc------ccceeehHHHHHHHhC
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNF------EKRMWNCESIIEALEG 247 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f------~~~~wv~~~~~~~l~~ 247 (976)
..++||+.++.++++.|... ...-+.++|.+|+|||++|+.++.. +...+ ...+|.. ++...+.+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~------~~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l-~~~~l~a~ 243 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR------TKNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLAL-DMGALIAG 243 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEe-eHHHHhhc
Confidence 45999999999999999743 2334568999999999999998873 32211 2223321 11111111
Q ss_pred CCCCcccHHHHHHHHHHHHc--CCceEEEEcCCCCCC-----c--cCcHhHHHhhcCCCCC-cEEEEEcCchhhhhc---
Q 002044 248 FAPNLGELNSLLLRIDAFIA--RKKFLLILDDVWTDD-----Y--SKWEPFRRCLINGHRE-SRILVTTRKETVARM--- 314 (976)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-----~--~~~~~l~~~l~~~~~g-s~iivTtR~~~v~~~--- 314 (976)
. ....+.+.....+.+.+. +++.+|++|++..-. . .+...+..+. -..| -++|-+|........
T Consensus 244 ~-~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~--l~~g~i~~IgaTt~~e~r~~~~~ 320 (852)
T TIGR03346 244 A-KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPA--LARGELHCIGATTLDEYRKYIEK 320 (852)
T ss_pred c-hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchh--hhcCceEEEEeCcHHHHHHHhhc
Confidence 1 111233334444444443 468999999995311 0 0111221111 1222 355555554433211
Q ss_pred ----cCCcceEecCCCCHHHHHHHHHHHh
Q 002044 315 ----MESTDVIFIKELSEQECWALFKRFA 339 (976)
Q Consensus 315 ----~~~~~~~~l~~L~~~~~~~Lf~~~~ 339 (976)
.....++.+...+.++..+++....
T Consensus 321 d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 321 DAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred CHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 1234578899999999999887653
No 146
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.52 E-value=0.00016 Score=77.84 Aligned_cols=77 Identities=17% Similarity=0.076 Sum_probs=49.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH---------HHHHHHhCC----CCCcccHHH-----HHHHH
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE---------SIIEALEGF----APNLGELNS-----LLLRI 262 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---------~~~~~l~~~----~~~~~~~~~-----~~~~l 262 (976)
-+-.+|+|++|+||||||+++|++.... +|+..+||.+ ++.+.+.+. ..+.....+ ..-..
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 3467899999999999999999964433 8999999876 455555331 111111110 11111
Q ss_pred HHH--HcCCceEEEEcCC
Q 002044 263 DAF--IARKKFLLILDDV 278 (976)
Q Consensus 263 ~~~--l~~k~~LlVlDdv 278 (976)
.++ -.+++++|++|++
T Consensus 248 Ae~~~e~G~dVlL~iDsI 265 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSI 265 (416)
T ss_pred HHHHHHcCCCEEEEEECh
Confidence 222 2579999999999
No 147
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.50 E-value=0.0016 Score=74.04 Aligned_cols=162 Identities=14% Similarity=0.104 Sum_probs=88.9
Q ss_pred CCccccchhHHHHHHHHHhcccc-------cCCCCeEEEEEEecCCchHHHHHHHHhcccchhccc-----ccceeehHH
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSS-------EQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNF-----EKRMWNCES 240 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-----~~~~wv~~~ 240 (976)
-.++.|.+..++++.+.+..+-. .+-...+-|.++|++|.|||++|+.+++. ....+ ....|+.+.
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~ 258 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIK 258 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEecc
Confidence 34688899999998887642210 01123456899999999999999999984 32221 123333321
Q ss_pred HHHHHhCCCCCcccHHHHHHHHHHHH-----cCCceEEEEcCCCCCC-------ccCc-----HhHHHhhcCC--CCCcE
Q 002044 241 IIEALEGFAPNLGELNSLLLRIDAFI-----ARKKFLLILDDVWTDD-------YSKW-----EPFRRCLING--HRESR 301 (976)
Q Consensus 241 ~~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~-------~~~~-----~~l~~~l~~~--~~gs~ 301 (976)
..+.+. .. ..+.......+.+.. .+++++|+||+++.-- ..+. ..+...+... ..+..
T Consensus 259 ~~eLl~-ky--vGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~Vi 335 (512)
T TIGR03689 259 GPELLN-KY--VGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVI 335 (512)
T ss_pred chhhcc-cc--cchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceE
Confidence 111111 11 111222222222222 2478999999995310 1111 1232223221 23445
Q ss_pred EEEEcCchhhhh-cc----CCcceEecCCCCHHHHHHHHHHHh
Q 002044 302 ILVTTRKETVAR-MM----ESTDVIFIKELSEQECWALFKRFA 339 (976)
Q Consensus 302 iivTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~Lf~~~~ 339 (976)
||.||....... .+ .-...++++..+.++..++|..+.
T Consensus 336 VI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 336 VIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred EEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 666665543222 11 124568999999999999999876
No 148
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=0.00063 Score=79.91 Aligned_cols=189 Identities=13% Similarity=0.158 Sum_probs=108.7
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhccc---ccce-eehHHHHHHHhCCC
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNF---EKRM-WNCESIIEALEGFA 249 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~-wv~~~~~~~l~~~~ 249 (976)
.+++|.+...+.|...+... .-...+.++|..|+||||+|+.+++...-.... .|.. -.|..+. .+..
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~---~g~~ 87 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTG-----RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEIT---EGRS 87 (576)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHh---cCCC
Confidence 57999999999999988632 234567899999999999999987731111111 1100 0011110 0111
Q ss_pred CC--------cccHHHHHHHHHHHH-----cCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEc-Cchhhhhcc
Q 002044 250 PN--------LGELNSLLLRIDAFI-----ARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTT-RKETVARMM 315 (976)
Q Consensus 250 ~~--------~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~v~~~~ 315 (976)
.+ ...+++ ++.+.+.+ .+++-++|+|++..-.......|...+......+.+|++| ....+...+
T Consensus 88 ~d~~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 88 VDVFEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITI 166 (576)
T ss_pred CCeeeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHH
Confidence 10 111222 22233322 2445589999996544455667777776655556666555 444444332
Q ss_pred -CCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCc-hHHHHHhhh
Q 002044 316 -ESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLP-LAAKTIGSL 375 (976)
Q Consensus 316 -~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~~~ 375 (976)
.....+++++++.++....+...+-..+.... .+....|++.++|.. .|+..+-..
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~----~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 167 LSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS----DAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred HHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34568889999999988888766532222122 344556888998865 455554433
No 149
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.0012 Score=71.12 Aligned_cols=184 Identities=15% Similarity=0.160 Sum_probs=109.1
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccch-------------hcccccceeehHH
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDV-------------ISNFEKRMWNCES 240 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-------------~~~f~~~~wv~~~ 240 (976)
.+++|.+..++.+...+.... -.....++|..|+||+++|..+++..-- ...++...|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 468999999999999987421 2478999999999999999887652100 1122223343210
Q ss_pred H-----------HHHHh--CCCCCcccHHHHHHHHHHHHc-----CCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEE
Q 002044 241 I-----------IEALE--GFAPNLGELNSLLLRIDAFIA-----RKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRI 302 (976)
Q Consensus 241 ~-----------~~~l~--~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 302 (976)
. .+... +.....-.+++ ++.+.+.+. +++-++|+|++..-+......+...+-.-.+ +.+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~-~~f 156 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGN-GTL 156 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCC-CeE
Confidence 0 00000 00000111222 334444443 4566899999965555566667777755443 455
Q ss_pred EEEc-Cchhhhhcc-CCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHH
Q 002044 303 LVTT-RKETVARMM-ESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKT 371 (976)
Q Consensus 303 ivTt-R~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 371 (976)
|++| +...+...+ .....+.+.++++++..+.+....... .. ......++..++|.|..+..
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~---~~----~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE---IL----NINFPELLALAQGSPGAAIA 220 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc---cc----hhHHHHHHHHcCCCHHHHHH
Confidence 5554 444444332 346799999999999999998764211 10 11134689999999976544
No 150
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.49 E-value=9.8e-05 Score=58.26 Aligned_cols=58 Identities=19% Similarity=0.370 Sum_probs=26.1
Q ss_pred CcceEeeecCCCCCCCC-cCCCCCCCCCeEEEccCcchHHhhccCCCCCcccccCCCceeecccc
Q 002044 897 QLSSMKISYCSKLNSLP-DQLLQSTTLEELEIIRCPILEERFKKDTGEDWSKITHIPKIKIHGEY 960 (976)
Q Consensus 897 ~L~~L~l~~c~~L~~lp-~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~n~ 960 (976)
+|++|++++| +++.+| ..+.++++|++|++++| .+....+..+..++++.++++++|.
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-----~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-----NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSS-----SESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-----ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4444555544 244444 23344445555555544 3333333344444445555544443
No 151
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.48 E-value=0.0016 Score=72.44 Aligned_cols=180 Identities=13% Similarity=0.130 Sum_probs=97.1
Q ss_pred cCCccccchhHHHHHHHHHhcccc-------cCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-HHHH
Q 002044 172 DLSEVRGRVEEKNALKSKLLCKSS-------EQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SIIE 243 (976)
Q Consensus 172 ~~~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~ 243 (976)
.-.++.|.+..++++.+.+..+-. .+-...+-|.++|++|.|||++|+.+++. ....| +.+.. .+..
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f---i~i~~s~l~~ 217 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF---IRVVGSEFVQ 217 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEehHHHHH
Confidence 345688999888888877642211 01234577899999999999999999983 33333 11211 2222
Q ss_pred HHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCCCC------Cc----cC----cHhHHHhhcC--CCCCcEEEEEcC
Q 002044 244 ALEGFAPNLGELNSLLLRIDAFIARKKFLLILDDVWTD------DY----SK----WEPFRRCLIN--GHRESRILVTTR 307 (976)
Q Consensus 244 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------~~----~~----~~~l~~~l~~--~~~gs~iivTtR 307 (976)
...+. ........+.......+.+|++|++..- .. .. +..+...+.. ...+..||+||.
T Consensus 218 k~~ge-----~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN 292 (398)
T PTZ00454 218 KYLGE-----GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATN 292 (398)
T ss_pred Hhcch-----hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecC
Confidence 21111 1111222223333467899999998421 00 01 1122222221 224567888887
Q ss_pred chhhhhc--c---CCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCc
Q 002044 308 KETVARM--M---ESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLP 366 (976)
Q Consensus 308 ~~~v~~~--~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 366 (976)
....... . .-...+.+...+.++..++|...... ......-++.. +++...|.-
T Consensus 293 ~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~-~~l~~dvd~~~----la~~t~g~s 351 (398)
T PTZ00454 293 RADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSK-MNLSEEVDLED----FVSRPEKIS 351 (398)
T ss_pred CchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhc-CCCCcccCHHH----HHHHcCCCC
Confidence 5433221 1 12456889888888888888765422 22122233444 556665543
No 152
>PRK12377 putative replication protein; Provisional
Probab=97.48 E-value=0.00025 Score=73.23 Aligned_cols=101 Identities=17% Similarity=0.095 Sum_probs=58.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-HHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCC
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDDVW 279 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 279 (976)
...+.++|.+|+|||+||..+++ ........++++++ +++..+.....+..... .+.+.+ .+--||||||+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~----~~l~~l-~~~dLLiIDDlg 173 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVTVPDVMSRLHESYDNGQSGE----KFLQEL-CKVDLLVLDEIG 173 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEHHHHHHHHHHHHhccchHH----HHHHHh-cCCCEEEEcCCC
Confidence 35789999999999999999999 44444445677766 44444432211111111 222222 356699999995
Q ss_pred CCCccCcHh--HHHhhcCC-CCCcEEEEEcCc
Q 002044 280 TDDYSKWEP--FRRCLING-HRESRILVTTRK 308 (976)
Q Consensus 280 ~~~~~~~~~--l~~~l~~~-~~gs~iivTtR~ 308 (976)
......|.. +...+... .+.-.+||||..
T Consensus 174 ~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 174 IQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 544445543 22222221 222357888874
No 153
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.48 E-value=0.0034 Score=73.42 Aligned_cols=185 Identities=15% Similarity=0.126 Sum_probs=104.6
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHh-CCCCC-
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALE-GFAPN- 251 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~-~~~~~- 251 (976)
.+++|.+...+.+..++.... -.+.+.++|..|+||||+|+.+.+.......-+...+-.+..-..+. +...+
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv 90 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDV 90 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCe
Confidence 579999999999999987432 35677889999999999999987631110000000000001111111 11111
Q ss_pred -------cccHHHHHHHHHHHH-----cCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEc-Cchhhhhc-cCC
Q 002044 252 -------LGELNSLLLRIDAFI-----ARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTT-RKETVARM-MES 317 (976)
Q Consensus 252 -------~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~v~~~-~~~ 317 (976)
...+++ +..+.+.. .+++-++|+|++..-....+..|...+........+|++| ....+... ...
T Consensus 91 ~eidaas~~~vd~-ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SR 169 (559)
T PRK05563 91 IEIDAASNNGVDE-IRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSR 169 (559)
T ss_pred EEeeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhH
Confidence 011221 22222222 3456688999996544455666776665544455555544 43333322 233
Q ss_pred cceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchH
Q 002044 318 TDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLA 368 (976)
Q Consensus 318 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 368 (976)
...+...+++.++..+.+...+-..+.... .+....|++.++|.+..
T Consensus 170 c~~~~f~~~~~~ei~~~L~~i~~~egi~i~----~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 170 CQRFDFKRISVEDIVERLKYILDKEGIEYE----DEALRLIARAAEGGMRD 216 (559)
T ss_pred heEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 567889999999998888876633221112 34455688888887653
No 154
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.47 E-value=0.0011 Score=76.01 Aligned_cols=157 Identities=14% Similarity=0.058 Sum_probs=89.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhccc--ccceeehH-HHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcC
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNF--EKRMWNCE-SIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDD 277 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~-~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDd 277 (976)
..-+.|+|.+|+|||+|++.+++ .....+ ..++|++. ++...+..... ... ...+.+.++ +.-+|||||
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~~~~~~~~~~~~~-~~~----~~~~~~~~~-~~dlLiiDD 219 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTSEKFTNDFVNALR-NNT----MEEFKEKYR-SVDVLLIDD 219 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEHHHHHHHHHHHHH-cCc----HHHHHHHHh-cCCEEEEeh
Confidence 35689999999999999999999 444443 23556665 22222211100 011 123334444 344899999
Q ss_pred CCCCCccC-c-HhHHHhhcC-CCCCcEEEEEcCchh---------hhhccCCcceEecCCCCHHHHHHHHHHHhcCCCCC
Q 002044 278 VWTDDYSK-W-EPFRRCLIN-GHRESRILVTTRKET---------VARMMESTDVIFIKELSEQECWALFKRFACFGRSL 345 (976)
Q Consensus 278 v~~~~~~~-~-~~l~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 345 (976)
+....... + +.+...+.. ...|..||+||.... +...+....++++++.+.++-.+++...+-....
T Consensus 220 i~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~- 298 (450)
T PRK00149 220 IQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGI- 298 (450)
T ss_pred hhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 95321111 1 222222211 123446888887432 2223344568999999999999999988743221
Q ss_pred CcchhHHHHHHHHHhhcCCCchHH
Q 002044 346 SECEQLEEIGKKIVGKCKGLPLAA 369 (976)
Q Consensus 346 ~~~~~~~~~~~~i~~~c~GlPLai 369 (976)
.. -+++..-|++.+.|..-.+
T Consensus 299 ~l---~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 299 DL---PDEVLEFIAKNITSNVREL 319 (450)
T ss_pred CC---CHHHHHHHHcCcCCCHHHH
Confidence 11 2455666888888866533
No 155
>PRK10536 hypothetical protein; Provisional
Probab=97.46 E-value=0.0017 Score=66.39 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=40.5
Q ss_pred CCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccce
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRM 235 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~ 235 (976)
...+.++......+..++.. ..+|.+.|.+|.|||+||..+..+.-..+.|+.++
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred CccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 34577888899999888862 24999999999999999998876422234455443
No 156
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.46 E-value=0.0011 Score=75.30 Aligned_cols=156 Identities=15% Similarity=0.112 Sum_probs=87.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhccc-c-cceeehH-HHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcC
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNF-E-KRMWNCE-SIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDD 277 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~-~~~wv~~-~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDd 277 (976)
..-+.|+|.+|+|||+|++.+++ .....+ . .++|++. ++...+..... ... ...+.+.+..+.-+|++||
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~~~f~~~~~~~~~-~~~----~~~f~~~~~~~~dvLlIDD 202 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSEKFLNDLVDSMK-EGK----LNEFREKYRKKVDVLLIDD 202 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEHHHHHHHHHHHHh-ccc----HHHHHHHHHhcCCEEEEec
Confidence 34589999999999999999998 444333 2 3567665 22222211100 011 1233344444566899999
Q ss_pred CCCCC-ccCc-HhHHHhhcC-CCCCcEEEEEcCc-hh--------hhhccCCcceEecCCCCHHHHHHHHHHHhcCCCCC
Q 002044 278 VWTDD-YSKW-EPFRRCLIN-GHRESRILVTTRK-ET--------VARMMESTDVIFIKELSEQECWALFKRFACFGRSL 345 (976)
Q Consensus 278 v~~~~-~~~~-~~l~~~l~~-~~~gs~iivTtR~-~~--------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 345 (976)
+..-. ...+ +.+...+.. ...|..||+||.. .. +...+....++.+++.+.+.-.+++.+.+......
T Consensus 203 i~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~ 282 (440)
T PRK14088 203 VQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGE 282 (440)
T ss_pred hhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCC
Confidence 95321 1111 123222211 1224468888852 21 11223335588999999999999998887432221
Q ss_pred CcchhHHHHHHHHHhhcCCCch
Q 002044 346 SECEQLEEIGKKIVGKCKGLPL 367 (976)
Q Consensus 346 ~~~~~~~~~~~~i~~~c~GlPL 367 (976)
-+ .++..-|++.+.|.--
T Consensus 283 l~----~ev~~~Ia~~~~~~~R 300 (440)
T PRK14088 283 LP----EEVLNFVAENVDDNLR 300 (440)
T ss_pred CC----HHHHHHHHhccccCHH
Confidence 22 4455667777776543
No 157
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.45 E-value=2.8e-05 Score=88.49 Aligned_cols=96 Identities=29% Similarity=0.447 Sum_probs=51.7
Q ss_pred CCCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccccCccccccCCccEEecCCCCCCcccchhhcccCCC
Q 002044 579 LTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLPETCCELLNLQTLNMCGSPGLKRLPQGIGKLINL 656 (976)
Q Consensus 579 l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L 656 (976)
+..++.+.+. .+.+...-..++.+.+|.+|++ +.+..+...+..+.+|++|++++|. |..+. ++..++.|
T Consensus 71 l~~l~~l~l~------~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~-~l~~l~~L 142 (414)
T KOG0531|consen 71 LTSLKELNLR------QNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLE-GLSTLTLL 142 (414)
T ss_pred hHhHHhhccc------hhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-ccccc-chhhccch
Confidence 3444444444 3444333233556666666666 4555555445566666666666665 55543 35556666
Q ss_pred cEEEecccccccCcccccCCCCCCcCC
Q 002044 657 RHLMFEVDYLEYMPKGIERLTSLRTLS 683 (976)
Q Consensus 657 ~~L~l~~~~l~~lp~~i~~l~~L~~L~ 683 (976)
+.|++.+|.+..++ ++..+++|+.++
T Consensus 143 ~~L~l~~N~i~~~~-~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 143 KELNLSGNLISDIS-GLESLKSLKLLD 168 (414)
T ss_pred hhheeccCcchhcc-CCccchhhhccc
Confidence 66666666665542 344444444443
No 158
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.43 E-value=0.00072 Score=75.73 Aligned_cols=156 Identities=14% Similarity=0.155 Sum_probs=88.3
Q ss_pred CccccchhHHHHHHHHHhccccc-------CCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHh
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSE-------QTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALE 246 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~ 246 (976)
.++.|.+..++++.+.+..+-.. +-...+-|.++|++|+|||++|+.+++ .....|-. +....+.....
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~fi~--V~~seL~~k~~ 258 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATFLR--VVGSELIQKYL 258 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCEEE--Eecchhhhhhc
Confidence 46789999998888877422110 012445688999999999999999998 34444421 11112222211
Q ss_pred CCCCCcccHHHHHHH-HHHHHcCCceEEEEcCCCCC------Ccc----C----cHhHHHhhcC--CCCCcEEEEEcCch
Q 002044 247 GFAPNLGELNSLLLR-IDAFIARKKFLLILDDVWTD------DYS----K----WEPFRRCLIN--GHRESRILVTTRKE 309 (976)
Q Consensus 247 ~~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~------~~~----~----~~~l~~~l~~--~~~gs~iivTtR~~ 309 (976)
+ ........ +.......+.+|+||++..- ... . +..+...+.. ...+.+||+||...
T Consensus 259 G------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~ 332 (438)
T PTZ00361 259 G------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRI 332 (438)
T ss_pred c------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCCh
Confidence 1 11122222 22233457889999998321 000 0 1111222211 13356788888754
Q ss_pred hhhhc-c----CCcceEecCCCCHHHHHHHHHHHh
Q 002044 310 TVARM-M----ESTDVIFIKELSEQECWALFKRFA 339 (976)
Q Consensus 310 ~v~~~-~----~~~~~~~l~~L~~~~~~~Lf~~~~ 339 (976)
..... + .....+.+...+.++..++|..++
T Consensus 333 d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 333 ESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred HHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHH
Confidence 43322 1 124578899999999999998765
No 159
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.41 E-value=0.0019 Score=63.11 Aligned_cols=44 Identities=18% Similarity=0.186 Sum_probs=36.9
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhc
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.++||-++.++++.-.-. +++.+-+.|.||+|+||||-+..+++
T Consensus 27 ~dIVGNe~tv~rl~via~------~gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAK------EGNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHH------cCCCCceEeeCCCCCchhhHHHHHHH
Confidence 579999999998876655 44677889999999999998887776
No 160
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.41 E-value=0.0011 Score=81.72 Aligned_cols=154 Identities=18% Similarity=0.198 Sum_probs=84.5
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhccc------ccceeehHHHHHHHhC
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNF------EKRMWNCESIIEALEG 247 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f------~~~~wv~~~~~~~l~~ 247 (976)
..++||+.++.++++.|... ...-+.++|.+|+||||+|+.++.. +.... ...+|. .++-..+.+
T Consensus 178 ~~vigr~~ei~~~i~iL~r~------~~~n~lL~G~pGvGKT~l~~~la~~--i~~~~vp~~l~~~~~~~-l~l~~l~ag 248 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR--IINGEVPEGLKGRRVLA-LDMGALVAG 248 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC------CcCceEEECCCCCCHHHHHHHHHHH--hhcCCCchhhCCCEEEE-Eehhhhhhc
Confidence 46999999999999999743 3335669999999999999999873 32211 122222 111111111
Q ss_pred CCCCcccHHHHHHHHHHHH--cCCceEEEEcCCCCCC-------ccCcHh-HHHhhcCCCCCcEEEEEcCchhhhhc---
Q 002044 248 FAPNLGELNSLLLRIDAFI--ARKKFLLILDDVWTDD-------YSKWEP-FRRCLINGHRESRILVTTRKETVARM--- 314 (976)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~-------~~~~~~-l~~~l~~~~~gs~iivTtR~~~v~~~--- 314 (976)
.. ...+.++....+.+.+ .+++.+|++|++..-. ..+... +...+.. ..-++|-||........
T Consensus 249 ~~-~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~--g~l~~IgaTt~~e~r~~~~~ 325 (857)
T PRK10865 249 AK-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDEYRQYIEK 325 (857)
T ss_pred cc-hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc--CCCeEEEcCCCHHHHHHhhh
Confidence 11 1122333333333333 2568999999994311 001122 2222211 12456666655443211
Q ss_pred ----cCCcceEecCCCCHHHHHHHHHHHh
Q 002044 315 ----MESTDVIFIKELSEQECWALFKRFA 339 (976)
Q Consensus 315 ----~~~~~~~~l~~L~~~~~~~Lf~~~~ 339 (976)
......+.+..-+.++..+++....
T Consensus 326 d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 326 DAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred cHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 1223356677678899988886543
No 161
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.39 E-value=0.00011 Score=58.03 Aligned_cols=59 Identities=29% Similarity=0.345 Sum_probs=48.8
Q ss_pred CCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccccc
Q 002044 773 PNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMP-ALGILPSLEVLKIRFMK 831 (976)
Q Consensus 773 ~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~L~~~~ 831 (976)
|+|+.|++++|.+..+.+.++..+++|+.|+|++|......+ .+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 578999999998888856788899999999999886543322 47899999999999875
No 162
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.36 E-value=0.0011 Score=71.86 Aligned_cols=162 Identities=12% Similarity=0.108 Sum_probs=92.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchhccc---ccceeehHHHHHHHhCCCC-----------CcccHHHHHHHHHHH
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVISNF---EKRMWNCESIIEALEGFAP-----------NLGELNSLLLRIDAF 265 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~~~l~~~~~-----------~~~~~~~~~~~l~~~ 265 (976)
-...+.++|+.|+||||+|+.+++..--.... .|.-.-....+. .+..+ ....+++..+ +.+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~--~g~HPD~~~i~~~~~~~~i~id~iR~-l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLR--AGSHPDNFVLEPEEADKTIKVDQVRE-LVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHh--cCCCCCEEEEeccCCCCCCCHHHHHH-HHHH
Confidence 35678899999999999998887631111000 010000001110 01100 1112232222 3333
Q ss_pred H-----cCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCch-hhhhc-cCCcceEecCCCCHHHHHHHHHHH
Q 002044 266 I-----ARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKE-TVARM-MESTDVIFIKELSEQECWALFKRF 338 (976)
Q Consensus 266 l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~ 338 (976)
+ .+++-++|+|++..-+......+...+..-..++.+|+||.+. .+... ......+.+.+++.+++.+.+...
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQA 177 (328)
T ss_pred HhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHh
Confidence 2 2344456789997666666777777776655667777777764 33322 234678999999999999988765
Q ss_pred hcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHH
Q 002044 339 ACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTI 372 (976)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 372 (976)
. ... . .+.+..++..++|.|.....+
T Consensus 178 ~-~~~---~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 178 L-PES---D----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred c-ccC---C----hHHHHHHHHHcCCCHHHHHHH
Confidence 3 111 1 233456789999999765444
No 163
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0065 Score=69.58 Aligned_cols=164 Identities=17% Similarity=0.212 Sum_probs=91.3
Q ss_pred CCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCCC-
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAPN- 251 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~~- 251 (976)
+.+-+|.++-.++|++.|.-..-...-.-+++++||++|||||.|++.+++ ...+.|-...-=-+.=-..+.++...
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~RkfvR~sLGGvrDEAEIRGHRRTY 399 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFVRISLGGVRDEAEIRGHRRTY 399 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEEEEecCccccHHHhccccccc
Confidence 456789999999999998643221123457999999999999999999998 55555532221001111112222110
Q ss_pred cccH-HHHHHHHHHHHcCCceEEEEcCCCCCCc----cCcHhHHHhhcCC-CC------------CcEE-EEEcCc-hh-
Q 002044 252 LGEL-NSLLLRIDAFIARKKFLLILDDVWTDDY----SKWEPFRRCLING-HR------------ESRI-LVTTRK-ET- 310 (976)
Q Consensus 252 ~~~~-~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~l~~~l~~~-~~------------gs~i-ivTtR~-~~- 310 (976)
...+ ..+++.++ ..+.++-+++||.+..... +.-..+...|.+. ++ =|.| .|||-+ -+
T Consensus 400 IGamPGrIiQ~mk-ka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~t 478 (782)
T COG0466 400 IGAMPGKIIQGMK-KAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDT 478 (782)
T ss_pred cccCChHHHHHHH-HhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCcccc
Confidence 1111 12222222 2345678999999953211 1112233333211 10 1333 344432 22
Q ss_pred h-hhccCCcceEecCCCCHHHHHHHHHHHh
Q 002044 311 V-ARMMESTDVIFIKELSEQECWALFKRFA 339 (976)
Q Consensus 311 v-~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 339 (976)
+ +..++...++++.+-+++|-.+.-+++.
T Consensus 479 IP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 479 IPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred CChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 2 2224557899999999999888877765
No 164
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.36 E-value=0.004 Score=75.52 Aligned_cols=164 Identities=17% Similarity=0.183 Sum_probs=88.9
Q ss_pred CCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCCC-
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAPN- 251 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~~- 251 (976)
+.+.+|.++-+++|.++|............++.++|++|+||||+|+.++. .....|-.+.+-.+.-...+.+....
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~~~i~~~~~~d~~~i~g~~~~~ 398 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKYVRMALGGVRDEAEIRGHRRTY 398 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCEEEEEcCCCCCHHHhccchhcc
Confidence 456899999999999888742211122446899999999999999999987 33333322222111111122221100
Q ss_pred c-ccHHHHHHHHHHHHcCCceEEEEcCCCCCCccC----cHhHHHhhcCC---------------CCCcEEEEEcCchhh
Q 002044 252 L-GELNSLLLRIDAFIARKKFLLILDDVWTDDYSK----WEPFRRCLING---------------HRESRILVTTRKETV 311 (976)
Q Consensus 252 ~-~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~----~~~l~~~l~~~---------------~~gs~iivTtR~~~v 311 (976)
. .....+.+.+.. .....-+++||.+..-.... .+.+...+... -...-+|.|+....+
T Consensus 399 ~g~~~G~~~~~l~~-~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i 477 (784)
T PRK10787 399 IGSMPGKLIQKMAK-VGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNI 477 (784)
T ss_pred CCCCCcHHHHHHHh-cCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCC
Confidence 0 011122222322 12234578999995432211 23444443321 123344555544333
Q ss_pred hhc-cCCcceEecCCCCHHHHHHHHHHHh
Q 002044 312 ARM-MESTDVIFIKELSEQECWALFKRFA 339 (976)
Q Consensus 312 ~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~ 339 (976)
... .+...++.+.+++.++-.++.+++.
T Consensus 478 ~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 478 PAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred CHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 222 2335688999999999888887765
No 165
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.34 E-value=0.0014 Score=76.56 Aligned_cols=51 Identities=18% Similarity=0.248 Sum_probs=40.8
Q ss_pred CCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcc
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
..+++|-++.++++..++...... ....+++.|+|++|+||||+++.++..
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~-~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLE-NAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccc-cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999998754321 224468999999999999999999973
No 166
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.33 E-value=0.00089 Score=68.98 Aligned_cols=102 Identities=16% Similarity=0.166 Sum_probs=58.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-HHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCC
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDDVW 279 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 279 (976)
...+.++|.+|+|||+||..+++. ....-..++++++ +++..+....... +.....+.+.+. +.=+||+||+.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it~~~l~~~l~~~~~~~---~~~~~~~l~~l~-~~dlLvIDDig 172 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIITVADIMSAMKDTFSNS---ETSEEQLLNDLS-NVDLLVIDEIG 172 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEHHHHHHHHHHHHhhc---cccHHHHHHHhc-cCCEEEEeCCC
Confidence 457899999999999999999983 4333345566666 4444443221110 111223334454 34588889997
Q ss_pred CCCccCcHh--HHHhhcCC-CCCcEEEEEcCc
Q 002044 280 TDDYSKWEP--FRRCLING-HRESRILVTTRK 308 (976)
Q Consensus 280 ~~~~~~~~~--l~~~l~~~-~~gs~iivTtR~ 308 (976)
......|+. +...+... ...-.+||||..
T Consensus 173 ~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 173 VQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 655556664 22222111 122458888874
No 167
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.32 E-value=0.00027 Score=69.42 Aligned_cols=100 Identities=22% Similarity=0.344 Sum_probs=53.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-HHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCC
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDDVW 279 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 279 (976)
..-+.++|..|+|||.||..+.+.. +...+ .+.|+.. +++..+...... ..... +.+.+. +-=||||||+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~-~~~g~-~v~f~~~~~L~~~l~~~~~~-~~~~~----~~~~l~-~~dlLilDDlG 118 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEA-IRKGY-SVLFITASDLLDELKQSRSD-GSYEE----LLKRLK-RVDLLILDDLG 118 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHH-HHTT---EEEEEHHHHHHHHHCCHCC-TTHCH----HHHHHH-TSSCEEEETCT
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHh-ccCCc-ceeEeecCceeccccccccc-cchhh----hcCccc-cccEecccccc
Confidence 4568999999999999999998842 23333 3556655 777777653221 22222 223333 34577899996
Q ss_pred CCCccCcHh--HHHhhcCC-CCCcEEEEEcCch
Q 002044 280 TDDYSKWEP--FRRCLING-HRESRILVTTRKE 309 (976)
Q Consensus 280 ~~~~~~~~~--l~~~l~~~-~~gs~iivTtR~~ 309 (976)
......|.. +...+... .++ .+||||...
T Consensus 119 ~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 119 YEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp SS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred eeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 654444432 11111111 123 588899743
No 168
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.30 E-value=0.0074 Score=74.04 Aligned_cols=163 Identities=17% Similarity=0.181 Sum_probs=85.0
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCCC-c
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAPN-L 252 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~~-~ 252 (976)
.+++|.+..+++|.+++......+....+++.++|++|+|||++|+.+++ .....|-.+..-...-...+.+.... .
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~--~l~~~~~~i~~~~~~~~~~i~g~~~~~~ 397 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK--ALNRKFVRFSLGGVRDEAEIRGHRRTYV 397 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH--HhcCCeEEEeCCCcccHHHHcCCCCcee
Confidence 45889999999998876532211122345899999999999999999998 34334422211111111222221110 0
Q ss_pred -ccHHHHHHHHHHHHcCCceEEEEcCCCCCCcc----CcHhHHHhhcC--------C-------CCCcEEEEEcCchh-h
Q 002044 253 -GELNSLLLRIDAFIARKKFLLILDDVWTDDYS----KWEPFRRCLIN--------G-------HRESRILVTTRKET-V 311 (976)
Q Consensus 253 -~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~----~~~~l~~~l~~--------~-------~~gs~iivTtR~~~-v 311 (976)
.....+.+.+... ..++-+|+||.+..-... ....+...+.. . ..+.-+|.||.... +
T Consensus 398 g~~~g~i~~~l~~~-~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i 476 (775)
T TIGR00763 398 GAMPGRIIQGLKKA-KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTI 476 (775)
T ss_pred CCCCchHHHHHHHh-CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhC
Confidence 1111222333332 234448899999543211 11223222211 0 02234455555432 1
Q ss_pred hhc-cCCcceEecCCCCHHHHHHHHHHHh
Q 002044 312 ARM-MESTDVIFIKELSEQECWALFKRFA 339 (976)
Q Consensus 312 ~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~ 339 (976)
... .....++++.+++.++-.+++....
T Consensus 477 ~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 477 PRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred CHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 111 2334688999999988888886654
No 169
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0071 Score=63.51 Aligned_cols=188 Identities=15% Similarity=0.147 Sum_probs=106.5
Q ss_pred CccccchhHHHHHHHHHhccccc-------CCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHh
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSE-------QTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALE 246 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~ 246 (976)
.++=|-++.+++|.+.+.-+-.+ +-+.++=|.++|++|.|||-||++|++ +....|=.++ -..+.+..-
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtFIrvv--gSElVqKYi 226 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATFIRVV--GSELVQKYI 226 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceEEEec--cHHHHHHHh
Confidence 45668899999988887544321 124567889999999999999999999 5555552211 113333333
Q ss_pred CCCCCcccHHHHHHHHHHHHc-CCceEEEEcCCCCC-----------Cc---cCcHhHHHhhcCC--CCCcEEEEEcCch
Q 002044 247 GFAPNLGELNSLLLRIDAFIA-RKKFLLILDDVWTD-----------DY---SKWEPFRRCLING--HRESRILVTTRKE 309 (976)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~-----------~~---~~~~~l~~~l~~~--~~gs~iivTtR~~ 309 (976)
+ +-..++..+.+.-+ ..+..|++|.+... |. ...-+|...+..+ ...-|||..|...
T Consensus 227 G------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~ 300 (406)
T COG1222 227 G------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRP 300 (406)
T ss_pred c------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCc
Confidence 2 22344555555554 45899999998421 10 1111233333332 2346899999866
Q ss_pred hhhhcc----CC-cceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCc----hHHHHHhhhh
Q 002044 310 TVARMM----ES-TDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLP----LAAKTIGSLL 376 (976)
Q Consensus 310 ~v~~~~----~~-~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP----Lai~~~~~~l 376 (976)
++.... +. ...+++..-+.+.-.++|+-+. ..-.....-+++. +++.|.|.- -|+.+=|+++
T Consensus 301 D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHt-rkM~l~~dvd~e~----la~~~~g~sGAdlkaictEAGm~ 371 (406)
T COG1222 301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHT-RKMNLADDVDLEL----LARLTEGFSGADLKAICTEAGMF 371 (406)
T ss_pred cccChhhcCCCcccceeecCCCCHHHHHHHHHHHh-hhccCccCcCHHH----HHHhcCCCchHHHHHHHHHHhHH
Confidence 544321 22 4567777444444455665554 2222233345555 666666654 3444445554
No 170
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.25 E-value=0.0037 Score=69.93 Aligned_cols=146 Identities=21% Similarity=0.216 Sum_probs=86.3
Q ss_pred EEEEEecCCchHHHHHHHHhcccchhcccccceeehH-HHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCCCC
Q 002044 203 IISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDDVWTD 281 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~ 281 (976)
++.|.|+-++||||+++.+... ..+. .+++.. ++. .+.....+....+.+.-..++..|+||.|.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~-------~~~~~l~d~~~~~~~~~~~~~~yifLDEIq-- 104 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLR-------LDRIELLDLLRAYIELKEREKSYIFLDEIQ-- 104 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchh-------cchhhHHHHHHHHHHhhccCCceEEEeccc--
Confidence 9999999999999999777663 2222 333322 000 000111111222222222277899999994
Q ss_pred CccCcHhHHHhhcCCCCCcEEEEEcCchhhhhc------cCCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHH
Q 002044 282 DYSKWEPFRRCLINGHRESRILVTTRKETVARM------MESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIG 355 (976)
Q Consensus 282 ~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~------~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~ 355 (976)
....|+.....+.+.++. +|++|+-+..+... .+....+.+-||+-.|-..+-...+ ....... .
T Consensus 105 ~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~-------~~~~~~~-~ 175 (398)
T COG1373 105 NVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI-------EPSKLEL-L 175 (398)
T ss_pred CchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc-------chhHHHH-H
Confidence 457899988888887666 89999886543321 2456789999999888766543111 0001111 2
Q ss_pred HHHHhhcCCCchHHHH
Q 002044 356 KKIVGKCKGLPLAAKT 371 (976)
Q Consensus 356 ~~i~~~c~GlPLai~~ 371 (976)
-+-.-..||.|-++..
T Consensus 176 f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 176 FEKYLETGGFPESVKA 191 (398)
T ss_pred HHHHHHhCCCcHHHhC
Confidence 2233456889988753
No 171
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.22 E-value=0.0018 Score=61.28 Aligned_cols=78 Identities=24% Similarity=0.150 Sum_probs=43.6
Q ss_pred EEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHH------HH---HHhCCCCCcccHHHHHHHHHHHHcCCc-e
Q 002044 202 QIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESI------IE---ALEGFAPNLGELNSLLLRIDAFIARKK-F 271 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~------~~---~l~~~~~~~~~~~~~~~~l~~~l~~k~-~ 271 (976)
..+.|+|.+|+||||+|+.++.. .......++++..+. .. ..................+.+.....+ .
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPD 80 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCC
Confidence 47899999999999999999883 332222344444310 00 011111111222233334444444444 9
Q ss_pred EEEEcCCCCC
Q 002044 272 LLILDDVWTD 281 (976)
Q Consensus 272 LlVlDdv~~~ 281 (976)
+|++|+++..
T Consensus 81 viiiDei~~~ 90 (148)
T smart00382 81 VLILDEITSL 90 (148)
T ss_pred EEEEECCccc
Confidence 9999999653
No 172
>PRK08181 transposase; Validated
Probab=97.22 E-value=0.00056 Score=71.62 Aligned_cols=100 Identities=24% Similarity=0.159 Sum_probs=55.5
Q ss_pred EEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-HHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCCC
Q 002044 202 QIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDDVWT 280 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 280 (976)
.-+.++|.+|+|||.||..+.+ ........+.|+.+ +++..+..... ...... +.+.+ .+--||||||+..
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~~~~L~~~l~~a~~-~~~~~~----~l~~l-~~~dLLIIDDlg~ 178 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTRTTDLVQKLQVARR-ELQLES----AIAKL-DKFDLLILDDLAY 178 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeeeHHHHHHHHHHHHh-CCcHHH----HHHHH-hcCCEEEEecccc
Confidence 3589999999999999999988 33333344566665 45554432211 111221 22222 2345999999954
Q ss_pred CCccCcH--hHHHhhcCCCCCcEEEEEcCch
Q 002044 281 DDYSKWE--PFRRCLINGHRESRILVTTRKE 309 (976)
Q Consensus 281 ~~~~~~~--~l~~~l~~~~~gs~iivTtR~~ 309 (976)
.....|. .+...+...-.+..+||||...
T Consensus 179 ~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 179 VTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 3333332 2333332211123599999854
No 173
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.21 E-value=0.0011 Score=71.20 Aligned_cols=121 Identities=19% Similarity=0.233 Sum_probs=68.9
Q ss_pred cchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-HHHHHHhCCCCCcccHH
Q 002044 178 GRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SIIEALEGFAPNLGELN 256 (976)
Q Consensus 178 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~l~~~~~~~~~~~ 256 (976)
+|....+...+++..-.. ....+-+.++|..|+|||.||..+++. ....-..+.++++ .++..+.....+ ....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~~~l~~~lk~~~~~-~~~~ 209 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHFPEFIRELKNSISD-GSVK 209 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEHHHHHHHHHHHHhc-CcHH
Confidence 455555555555543221 123467899999999999999999994 3332233555555 444444322111 1111
Q ss_pred HHHHHHHHHHcCCceEEEEcCCCCCCccCcHh--HHHhhcC-C-CCCcEEEEEcCc
Q 002044 257 SLLLRIDAFIARKKFLLILDDVWTDDYSKWEP--FRRCLIN-G-HRESRILVTTRK 308 (976)
Q Consensus 257 ~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~--l~~~l~~-~-~~gs~iivTtR~ 308 (976)
+ .+ +.+ .+-=||||||+..+....|.. +...+.. . ..+-.+|+||..
T Consensus 210 ~---~l-~~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 210 E---KI-DAV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred H---HH-HHh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1 12 222 345689999997766677754 4443322 1 234568999874
No 174
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0068 Score=66.47 Aligned_cols=150 Identities=16% Similarity=0.236 Sum_probs=90.4
Q ss_pred CCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcC
Q 002044 198 TNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDD 277 (976)
Q Consensus 198 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDd 277 (976)
..+...|.+.|++|+|||+||..++.+ ..|+.+--++.. .+-+. .+......+...+....+..--.||+||
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe---~miG~-sEsaKc~~i~k~F~DAYkS~lsiivvDd 606 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPE---DMIGL-SESAKCAHIKKIFEDAYKSPLSIIVVDD 606 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChH---HccCc-cHHHHHHHHHHHHHHhhcCcceEEEEcc
Confidence 346778889999999999999999873 466654443321 11110 1111233444556666777888999999
Q ss_pred CCCCCccCcHh------------HHHhhcCC-CCCcE--EEEEcCchhhhhccCC----cceEecCCCCH-HHHHHHHHH
Q 002044 278 VWTDDYSKWEP------------FRRCLING-HRESR--ILVTTRKETVARMMES----TDVIFIKELSE-QECWALFKR 337 (976)
Q Consensus 278 v~~~~~~~~~~------------l~~~l~~~-~~gs~--iivTtR~~~v~~~~~~----~~~~~l~~L~~-~~~~~Lf~~ 337 (976)
+ +...+|-. +...+... .+|-| |+-||....+.+.|+. ...|.++.++. ++..+.++.
T Consensus 607 i--ErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 607 I--ERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred h--hhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHH
Confidence 9 33344422 22222221 22333 5556667778777754 45888998887 777777765
Q ss_pred HhcCCCCCCcchhHHHHHHHHHhhc
Q 002044 338 FACFGRSLSECEQLEEIGKKIVGKC 362 (976)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~i~~~c 362 (976)
.- ...+.+...++++...+|
T Consensus 685 ~n-----~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 685 LN-----IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred cc-----CCCcchhHHHHHHHhccc
Confidence 42 123345566666676666
No 175
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.20 E-value=0.0088 Score=69.63 Aligned_cols=179 Identities=14% Similarity=0.102 Sum_probs=92.9
Q ss_pred cCCccccchhHHHHHHHHHh---cccc---cCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-HHHHH
Q 002044 172 DLSEVRGRVEEKNALKSKLL---CKSS---EQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SIIEA 244 (976)
Q Consensus 172 ~~~~~~Gr~~~~~~l~~~L~---~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~ 244 (976)
.-.+++|.+..++++.+.+. .+.. .+....+-+.++|++|+|||++|+.+++.. ...| +.+.. .+...
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~~---~~i~~~~~~~~ 127 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVPF---FSISGSDFVEM 127 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCCe---eeccHHHHHHH
Confidence 34578898877666655443 2110 002234558899999999999999999842 2222 11111 12221
Q ss_pred HhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCCCCC----------ccCcHhH----HHhhc--CCCCCcEEEEEcCc
Q 002044 245 LEGFAPNLGELNSLLLRIDAFIARKKFLLILDDVWTDD----------YSKWEPF----RRCLI--NGHRESRILVTTRK 308 (976)
Q Consensus 245 l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~l----~~~l~--~~~~gs~iivTtR~ 308 (976)
..+. ....+...+.......+.+|++|++..-. ...+... ...+. ....+-.||.||..
T Consensus 128 ~~g~-----~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~ 202 (495)
T TIGR01241 128 FVGV-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNR 202 (495)
T ss_pred Hhcc-----cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCC
Confidence 1111 11222333334445677999999994310 0111121 11111 12234456666664
Q ss_pred hh-hhhcc----CCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCC
Q 002044 309 ET-VARMM----ESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGL 365 (976)
Q Consensus 309 ~~-v~~~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 365 (976)
.. +-..+ .-...+.+...+.++-.++|...+..... ..... ...+++.+.|.
T Consensus 203 ~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~~~----l~~la~~t~G~ 259 (495)
T TIGR01241 203 PDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APDVD----LKAVARRTPGF 259 (495)
T ss_pred hhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccchh----HHHHHHhCCCC
Confidence 33 11111 22457889988988888888876632211 11122 23577777773
No 176
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.19 E-value=0.0037 Score=77.06 Aligned_cols=132 Identities=17% Similarity=0.215 Sum_probs=74.6
Q ss_pred CccccchhHHHHHHHHHhcccc---cCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-H-----HHHH
Q 002044 174 SEVRGRVEEKNALKSKLLCKSS---EQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-S-----IIEA 244 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~-----~~~~ 244 (976)
..++|.+..++.+...+..... .++....++.++|+.|+|||++|+.+++. ....-...+.+.. . ....
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~~~~~~~ 645 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFMEKHSVSR 645 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhhhhhHHH
Confidence 4689999999999888864321 01223457889999999999999999862 2111112233332 1 1122
Q ss_pred HhCCCCCcccHHHHHHHHHHHHcCC-ceEEEEcCCCCCCccCcHhHHHhhcCC----C-------CCcEEEEEcCc
Q 002044 245 LEGFAPNLGELNSLLLRIDAFIARK-KFLLILDDVWTDDYSKWEPFRRCLING----H-------RESRILVTTRK 308 (976)
Q Consensus 245 l~~~~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~l~~~l~~~----~-------~gs~iivTtR~ 308 (976)
+.+..++....+. ...+.+.++.+ .-+|+||++...+...+..+...+..+ + ..+-||+||..
T Consensus 646 LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~ 720 (857)
T PRK10865 646 LVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL 720 (857)
T ss_pred HhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCc
Confidence 2222222111111 11233333333 359999999766666677776666443 1 22337888875
No 177
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.18 E-value=4e-05 Score=87.21 Aligned_cols=121 Identities=22% Similarity=0.322 Sum_probs=89.6
Q ss_pred ccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccccCccc
Q 002044 549 YARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLPETC 626 (976)
Q Consensus 549 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp~~i 626 (976)
.+..+..+.+..|.+.. ....+..+++|..|++. ++.+..+...+..+.+|++|++ +.|..+. .+
T Consensus 70 ~l~~l~~l~l~~n~i~~------~~~~l~~~~~l~~l~l~------~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l 136 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK------ILNHLSKLKSLEALDLY------DNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GL 136 (414)
T ss_pred HhHhHHhhccchhhhhh------hhcccccccceeeeecc------ccchhhcccchhhhhcchheecccccccccc-ch
Confidence 34556666666665432 11226788999999999 7778777655888999999999 6777774 46
Q ss_pred cccCCccEEecCCCCCCcccchhhcccCCCcEEEecccccccCccc-ccCCCCCCcCCc
Q 002044 627 CELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLEYMPKG-IERLTSLRTLSE 684 (976)
Q Consensus 627 ~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~ 684 (976)
..|..|+.|++.+|. +..++ ++..+++|+.+++++|.+..+... ...+.+|..+.+
T Consensus 137 ~~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l 193 (414)
T KOG0531|consen 137 STLTLLKELNLSGNL-ISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDL 193 (414)
T ss_pred hhccchhhheeccCc-chhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhc
Confidence 778889999999998 77664 466699999999999988887653 466666666653
No 178
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.17 E-value=0.012 Score=63.30 Aligned_cols=174 Identities=13% Similarity=0.078 Sum_probs=98.2
Q ss_pred HHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCC---------CC-
Q 002044 182 EKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFA---------PN- 251 (976)
Q Consensus 182 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~---------~~- 251 (976)
..+.+...+... .-...+.++|+.|+||+++|..+++..--.....+..--+...+.. +.. ++
T Consensus 12 ~~~~l~~~~~~~-----rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~--g~HPD~~~i~~~p~~ 84 (319)
T PRK08769 12 AYDQTVAALDAG-----RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAA--GTHPDLQLVSFIPNR 84 (319)
T ss_pred HHHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhc--CCCCCEEEEecCCCc
Confidence 445556555432 2345789999999999999988875211111011100000011100 100 00
Q ss_pred -------cccHHHHHHHHHHHHc-----CCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCc-hhhhhcc-CC
Q 002044 252 -------LGELNSLLLRIDAFIA-----RKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRK-ETVARMM-ES 317 (976)
Q Consensus 252 -------~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~-~~ 317 (976)
.-.++ .++.+.+.+. +++-++|+|++..-+...-..+...+..-..++.+|++|.. ..+...+ ..
T Consensus 85 ~~~k~~~~I~id-qIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSR 163 (319)
T PRK08769 85 TGDKLRTEIVIE-QVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSR 163 (319)
T ss_pred ccccccccccHH-HHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhh
Confidence 01122 2223333332 45669999999655545556677767665567777777764 3444332 34
Q ss_pred cceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHHh
Q 002044 318 TDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTIG 373 (976)
Q Consensus 318 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 373 (976)
...+.+.+++.+++.+.+.... . . ...+..++..++|.|+....+.
T Consensus 164 Cq~i~~~~~~~~~~~~~L~~~~---~---~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 164 CQRLEFKLPPAHEALAWLLAQG---V---S----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred heEeeCCCcCHHHHHHHHHHcC---C---C----hHHHHHHHHHcCCCHHHHHHHh
Confidence 6789999999999998886531 1 1 2225568999999998665443
No 179
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0011 Score=77.87 Aligned_cols=133 Identities=18% Similarity=0.288 Sum_probs=85.0
Q ss_pred CccccchhHHHHHHHHHhccc---ccCCCCeEEEEEEecCCchHHHHHHHHhcc----cchhcccccceeehHHHHHHHh
Q 002044 174 SEVRGRVEEKNALKSKLLCKS---SEQTNAVQIISLVGMGGIGKTTLAQFAYND----EDVISNFEKRMWNCESIIEALE 246 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~----~~~~~~f~~~~wv~~~~~~~l~ 246 (976)
..++|.+..+..+.+.+.... ..+...+.+...+|+.|||||.||+.++.. +..--+||..=|..-.....+-
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLI 570 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLI 570 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHh
Confidence 468999999999988886432 122456778889999999999999988762 1111122222222112333344
Q ss_pred CCCCCcccHHHHHHHHHHHHcCCce-EEEEcCCCCCCccCcHhHHHhhcCC----C-------CCcEEEEEcC
Q 002044 247 GFAPNLGELNSLLLRIDAFIARKKF-LLILDDVWTDDYSKWEPFRRCLING----H-------RESRILVTTR 307 (976)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~----~-------~gs~iivTtR 307 (976)
+..++--..++ --.+-+..++++| +|.||.|...+++.++.+...|.++ + +.+-||+||.
T Consensus 571 GaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN 642 (786)
T COG0542 571 GAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSN 642 (786)
T ss_pred CCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecc
Confidence 44443322222 3345667778888 8889999887777777777777665 2 2356777776
No 180
>PRK06526 transposase; Provisional
Probab=97.13 E-value=0.00068 Score=70.63 Aligned_cols=100 Identities=21% Similarity=0.216 Sum_probs=53.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-HHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCC
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDDVW 279 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 279 (976)
..-+.++|.+|+|||+||..+.... ....+ .+.|++. ++++.+...... .. ....+.+ + .+.-+||+||+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a-~~~g~-~v~f~t~~~l~~~l~~~~~~-~~---~~~~l~~-l-~~~dlLIIDD~g 169 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA-CQAGH-RVLFATAAQWVARLAAAHHA-GR---LQAELVK-L-GRYPLLIVDEVG 169 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH-HHCCC-chhhhhHHHHHHHHHHHHhc-Cc---HHHHHHH-h-ccCCEEEEcccc
Confidence 3458999999999999999998732 22233 3445544 445444322111 11 1122222 2 234689999995
Q ss_pred CCCccCcH--hHHHhhcC-CCCCcEEEEEcCch
Q 002044 280 TDDYSKWE--PFRRCLIN-GHRESRILVTTRKE 309 (976)
Q Consensus 280 ~~~~~~~~--~l~~~l~~-~~~gs~iivTtR~~ 309 (976)
......+. .+...+.. ...++ +|+||...
T Consensus 170 ~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 170 YIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 43222222 12222221 12344 88888754
No 181
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.12 E-value=0.00047 Score=81.91 Aligned_cols=108 Identities=23% Similarity=0.284 Sum_probs=80.5
Q ss_pred cccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecCccccccC----
Q 002044 548 FYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKLYLVEKLP---- 623 (976)
Q Consensus 548 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L~~~~~lp---- 623 (976)
..+|.|++|.+.+-.+.... +..++.+|++|+.||++ ++++..+ ..|++|++|+.|.+.+++--+
T Consensus 145 ~~LPsL~sL~i~~~~~~~~d----F~~lc~sFpNL~sLDIS------~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l 213 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDD----FSQLCASFPNLRSLDIS------GTNISNL-SGISRLKNLQVLSMRNLEFESYQDL 213 (699)
T ss_pred hhCcccceEEecCceecchh----HHHHhhccCccceeecC------CCCccCc-HHHhccccHHHHhccCCCCCchhhH
Confidence 35899999999987654332 33447899999999999 7777777 789999999999995544332
Q ss_pred ccccccCCccEEecCCCCCCcccchhh-------cccCCCcEEEecccccc
Q 002044 624 ETCCELLNLQTLNMCGSPGLKRLPQGI-------GKLINLRHLMFEVDYLE 667 (976)
Q Consensus 624 ~~i~~L~~L~~L~l~~~~~l~~lp~~i-------~~l~~L~~L~l~~~~l~ 667 (976)
..+.+|++|++||++...... -|.-+ ..|++||.||.+++.+.
T Consensus 214 ~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 214 IDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcchh
Confidence 257789999999999876332 22211 24899999999876654
No 182
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.12 E-value=0.0016 Score=79.84 Aligned_cols=132 Identities=18% Similarity=0.215 Sum_probs=75.4
Q ss_pred CccccchhHHHHHHHHHhccc---ccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHH-H-----HHH
Q 002044 174 SEVRGRVEEKNALKSKLLCKS---SEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCES-I-----IEA 244 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~-----~~~ 244 (976)
..++|.+..++.+.+.+.... ..+.....++.++|+.|+|||.||+.++.. ........+-++.+ . ...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~~~~~~ 643 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEAHTVSR 643 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhhhhhcc
Confidence 468999999999999886431 111345568999999999999999988762 21111111112221 1 111
Q ss_pred HhCCCCCcccHHHHHHHHHHHHc-CCceEEEEcCCCCCCccCcHhHHHhhcCCC-----------CCcEEEEEcCc
Q 002044 245 LEGFAPNLGELNSLLLRIDAFIA-RKKFLLILDDVWTDDYSKWEPFRRCLINGH-----------RESRILVTTRK 308 (976)
Q Consensus 245 l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 308 (976)
+.+..++.-...+ ...+.+.++ ...-+|+||++...++..++.+...+..+. ..+-||+||..
T Consensus 644 l~g~~~gyvg~~~-~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 644 LKGSPPGYVGYGE-GGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred ccCCCCCcccccc-cchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 2222111111111 011233333 345699999997766666777766665442 34567777764
No 183
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.10 E-value=0.0011 Score=65.78 Aligned_cols=121 Identities=21% Similarity=0.189 Sum_probs=59.4
Q ss_pred cchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH--HHHHHHhCCCC-----
Q 002044 178 GRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE--SIIEALEGFAP----- 250 (976)
Q Consensus 178 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~l~~~~~----- 250 (976)
.+..+.....+.|. ...+|.+.|++|.|||.||.+.+-+.-..++|+.++++.- ..-+.++-...
T Consensus 4 p~~~~Q~~~~~al~--------~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALL--------NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHH--------H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHH--------hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 44556666677776 3458999999999999999888765444577887777643 11111110000
Q ss_pred ----------------CcccHHHHHHH------HHHHHcCC---ceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEE
Q 002044 251 ----------------NLGELNSLLLR------IDAFIARK---KFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVT 305 (976)
Q Consensus 251 ----------------~~~~~~~~~~~------l~~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT 305 (976)
.....+..... -..+++++ ..+||+|++.+-...++. ..+-..+.|||||++
T Consensus 76 ~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k---~ilTR~g~~skii~~ 152 (205)
T PF02562_consen 76 MEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELK---MILTRIGEGSKIIIT 152 (205)
T ss_dssp --TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHH---HHHTTB-TT-EEEEE
T ss_pred HHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHH---HHHcccCCCcEEEEe
Confidence 00111111100 00123443 469999999654444444 445556788999999
Q ss_pred cCch
Q 002044 306 TRKE 309 (976)
Q Consensus 306 tR~~ 309 (976)
--..
T Consensus 153 GD~~ 156 (205)
T PF02562_consen 153 GDPS 156 (205)
T ss_dssp E---
T ss_pred cCce
Confidence 7544
No 184
>CHL00176 ftsH cell division protein; Validated
Probab=97.10 E-value=0.0051 Score=72.66 Aligned_cols=177 Identities=15% Similarity=0.164 Sum_probs=94.5
Q ss_pred CCccccchhHHHHHHHHH---hcccc---cCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-HHHHHH
Q 002044 173 LSEVRGRVEEKNALKSKL---LCKSS---EQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SIIEAL 245 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L---~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~l 245 (976)
-.++.|.++..+++.+.+ ..+.. -+....+-|.++|++|+|||++|+.+++. ....| +.+.. .+....
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~~p~---i~is~s~f~~~~ 256 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AEVPF---FSISGSEFVEMF 256 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCe---eeccHHHHHHHh
Confidence 346888877666655543 32211 01123456899999999999999999883 22222 11111 111111
Q ss_pred hCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCCCCC----------ccCcHh-HHHh---hcC--CCCCcEEEEEcCch
Q 002044 246 EGFAPNLGELNSLLLRIDAFIARKKFLLILDDVWTDD----------YSKWEP-FRRC---LIN--GHRESRILVTTRKE 309 (976)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~-l~~~---l~~--~~~gs~iivTtR~~ 309 (976)
.+. ........+.......+++|++|++..-. ...++. +... +.. ...+-.||.||...
T Consensus 257 ~g~-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~ 331 (638)
T CHL00176 257 VGV-----GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRV 331 (638)
T ss_pred hhh-----hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCch
Confidence 110 11222333444556778999999994210 111222 2222 211 23455677777654
Q ss_pred hhhh-cc----CCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCC
Q 002044 310 TVAR-MM----ESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKG 364 (976)
Q Consensus 310 ~v~~-~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G 364 (976)
.... .+ .-...+.+...+.++-.++++.++.. ..... ......+++.+.|
T Consensus 332 ~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~-~~~~~----d~~l~~lA~~t~G 386 (638)
T CHL00176 332 DILDAALLRPGRFDRQITVSLPDREGRLDILKVHARN-KKLSP----DVSLELIARRTPG 386 (638)
T ss_pred HhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhh-cccch----hHHHHHHHhcCCC
Confidence 3222 11 12467888888999999999887632 11111 2233557777777
No 185
>PRK09183 transposase/IS protein; Provisional
Probab=97.10 E-value=0.00096 Score=70.03 Aligned_cols=100 Identities=22% Similarity=0.264 Sum_probs=51.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-HHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCCC
Q 002044 202 QIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDDVWT 280 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 280 (976)
..+.|+|.+|+|||+||..+.+.. ....+ .+.++.. ++...+...... .. ....+... -.+.-++|+||+..
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a-~~~G~-~v~~~~~~~l~~~l~~a~~~-~~---~~~~~~~~-~~~~dlLiiDdlg~ 175 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEA-VRAGI-KVRFTTAADLLLQLSTAQRQ-GR---YKTTLQRG-VMAPRLLIIDEIGY 175 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHH-HHcCC-eEEEEeHHHHHHHHHHHHHC-Cc---HHHHHHHH-hcCCCEEEEccccc
Confidence 467899999999999999997632 12222 3344443 344333211100 01 11222222 23456999999964
Q ss_pred CCccCcH--hHHHhhcCC-CCCcEEEEEcCch
Q 002044 281 DDYSKWE--PFRRCLING-HRESRILVTTRKE 309 (976)
Q Consensus 281 ~~~~~~~--~l~~~l~~~-~~gs~iivTtR~~ 309 (976)
.....+. .+...+... ..++ +||||...
T Consensus 176 ~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~~ 206 (259)
T PRK09183 176 LPFSQEEANLFFQVIAKRYEKGS-MILTSNLP 206 (259)
T ss_pred CCCChHHHHHHHHHHHHHHhcCc-EEEecCCC
Confidence 3333332 233322221 2344 88888743
No 186
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.10 E-value=0.00042 Score=50.01 Aligned_cols=37 Identities=32% Similarity=0.555 Sum_probs=24.7
Q ss_pred ccceecC--ccccccCccccccCCccEEecCCCCCCcccc
Q 002044 610 HLRYLKL--YLVEKLPETCCELLNLQTLNMCGSPGLKRLP 647 (976)
Q Consensus 610 ~Lr~L~L--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp 647 (976)
+|++|++ +.+..+|..+++|++|++|++++|. +.++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 5666666 5666777667777888888888876 66554
No 187
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.08 E-value=0.0043 Score=75.65 Aligned_cols=129 Identities=16% Similarity=0.177 Sum_probs=74.3
Q ss_pred CccccchhHHHHHHHHHhcccc---cCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH------HHHHH
Q 002044 174 SEVRGRVEEKNALKSKLLCKSS---EQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE------SIIEA 244 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~------~~~~~ 244 (976)
..++|.+..++.+...+..... .......++.++|+.|+|||+||+.++.. ... ..+.++. .....
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l~~---~~~~~d~se~~~~~~~~~ 528 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--LGV---HLERFDMSEYMEKHTVSR 528 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--hcC---CeEEEeCchhhhcccHHH
Confidence 4588999999988888764211 01223457899999999999999999873 321 1222222 11122
Q ss_pred HhCCCCCcccHHHHHHHHHHHHcCCc-eEEEEcCCCCCCccCcHhHHHhhcCC----C-------CCcEEEEEcCc
Q 002044 245 LEGFAPNLGELNSLLLRIDAFIARKK-FLLILDDVWTDDYSKWEPFRRCLING----H-------RESRILVTTRK 308 (976)
Q Consensus 245 l~~~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~----~-------~gs~iivTtR~ 308 (976)
+.+...+....+ ....+.+.++.++ -+++||++...+++.++.+...+..+ + ..+-||+||..
T Consensus 529 lig~~~gyvg~~-~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~ 603 (731)
T TIGR02639 529 LIGAPPGYVGFE-QGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNA 603 (731)
T ss_pred HhcCCCCCcccc-hhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCc
Confidence 222222111111 1123344444444 49999999877777677777666543 1 23447777753
No 188
>PRK08118 topology modulation protein; Reviewed
Probab=97.04 E-value=0.0011 Score=64.58 Aligned_cols=65 Identities=20% Similarity=0.314 Sum_probs=40.8
Q ss_pred EEEEEecCCchHHHHHHHHhcccchh-cccccceeehHHHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCC
Q 002044 203 IISLVGMGGIGKTTLAQFAYNDEDVI-SNFEKRMWNCESIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDDVW 279 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 279 (976)
.|.|+|++|+||||||+.+++...+. -+||..+|-.. ......++....+.+.+++.. .|+|+.+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~----------w~~~~~~~~~~~~~~~~~~~~--wVidG~~ 68 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPN----------WEGVPKEEQITVQNELVKEDE--WIIDGNY 68 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccC----------CcCCCHHHHHHHHHHHhcCCC--EEEeCCc
Confidence 58999999999999999999854333 45676665210 011112234444555565555 4778874
No 189
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.04 E-value=0.0059 Score=75.62 Aligned_cols=132 Identities=17% Similarity=0.229 Sum_probs=76.0
Q ss_pred CccccchhHHHHHHHHHhcccc---cCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH------HHHHH
Q 002044 174 SEVRGRVEEKNALKSKLLCKSS---EQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE------SIIEA 244 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~------~~~~~ 244 (976)
..++|.+..++.+...+..... .+.....++.++|+.|+|||++|+.+... ....-...+.+.. .....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~~~~ 642 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHSVAR 642 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccchHHH
Confidence 4689999999999998875321 11223567889999999999999999872 2111111122221 11112
Q ss_pred HhCCCCCcccHHHHHHHHHHHHcCCc-eEEEEcCCCCCCccCcHhHHHhhcCCC-----------CCcEEEEEcCc
Q 002044 245 LEGFAPNLGELNSLLLRIDAFIARKK-FLLILDDVWTDDYSKWEPFRRCLINGH-----------RESRILVTTRK 308 (976)
Q Consensus 245 l~~~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 308 (976)
+.+..++....++ ...+.+.++.++ .+|+||++...++..+..+...+..+. ..+-||+||..
T Consensus 643 l~g~~~g~~g~~~-~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 643 LIGAPPGYVGYEE-GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred hcCCCCCccCccc-ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 2222211111111 112333443344 499999998777777777777765431 23448888875
No 190
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=7.9e-06 Score=82.17 Aligned_cols=166 Identities=17% Similarity=0.190 Sum_probs=114.5
Q ss_pred HHhccCCCCCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEeecCCCCCC--cccccccccccEEEEe
Q 002044 728 AKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITGFKGRTLM--LSWIVSLNKLKKLRLL 805 (976)
Q Consensus 728 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~--p~~~~~l~~L~~L~L~ 805 (976)
.....+..|..|+.|++.+.... +.+...+....+|+.|+|++|.+.+.- ...+.+|+.|..|+|+
T Consensus 201 tl~~iLs~C~kLk~lSlEg~~Ld------------D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNls 268 (419)
T KOG2120|consen 201 TLHGILSQCSKLKNLSLEGLRLD------------DPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLS 268 (419)
T ss_pred HHHHHHHHHHhhhhccccccccC------------cHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCch
Confidence 34456778889999999876543 566667778889999999999876531 1234489999999999
Q ss_pred CCCCCCCC-C--CCCCCCCcceeeccccccceEeCccccCCCcCcccccccCCCCCCCCCccCccCCccceeeecccccc
Q 002044 806 FCDKCEVM-P--ALGILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEW 882 (976)
Q Consensus 806 ~~~~~~~l-~--~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l 882 (976)
.|...... . .-.--++|+.|+|+||... +... .+..+ ....|+|..|+++++..+
T Consensus 269 Wc~l~~~~Vtv~V~hise~l~~LNlsG~rrn--l~~s-----h~~tL---------------~~rcp~l~~LDLSD~v~l 326 (419)
T KOG2120|consen 269 WCFLFTEKVTVAVAHISETLTQLNLSGYRRN--LQKS-----HLSTL---------------VRRCPNLVHLDLSDSVML 326 (419)
T ss_pred HhhccchhhhHHHhhhchhhhhhhhhhhHhh--hhhh-----HHHHH---------------HHhCCceeeecccccccc
Confidence 99754432 1 1123478899999988521 1111 00000 135899999999998877
Q ss_pred cccccCCCccccCCCcceEeeecCCCCCCCCcC---CCCCCCCCeEEEccCc
Q 002044 883 EEWDFGKEDITIMPQLSSMKISYCSKLNSLPDQ---LLQSTTLEELEIIRCP 931 (976)
Q Consensus 883 ~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~---l~~l~~L~~L~l~~c~ 931 (976)
..-.+. .+..|+.|++|.++.|= .-.|.- +...|+|..|++.||-
T Consensus 327 ~~~~~~--~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 327 KNDCFQ--EFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred CchHHH--HHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEecccc
Confidence 652221 14579999999999995 334533 4556899999999994
No 191
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.01 E-value=0.0016 Score=66.26 Aligned_cols=36 Identities=22% Similarity=0.271 Sum_probs=28.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcccchhcccccceeehH
Q 002044 202 QIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE 239 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 239 (976)
-.++|+|..|.||||++..+.. .....|+.+++++.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 3568999999999999999987 46778877766644
No 192
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.98 E-value=0.00097 Score=72.43 Aligned_cols=78 Identities=15% Similarity=0.086 Sum_probs=49.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH---------HHHHHHhCC----CCCcccHH--H----HHHH
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE---------SIIEALEGF----APNLGELN--S----LLLR 261 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---------~~~~~l~~~----~~~~~~~~--~----~~~~ 261 (976)
-..++|+|.+|.|||||++.+++.... .+|+..+|+.+ ++.+.+.+. ..+..... . ..+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 457899999999999999999995332 37988888765 455555221 11111111 1 1111
Q ss_pred HHHH-HcCCceEEEEcCCC
Q 002044 262 IDAF-IARKKFLLILDDVW 279 (976)
Q Consensus 262 l~~~-l~~k~~LlVlDdv~ 279 (976)
.... -.+++++|++|++.
T Consensus 247 Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHcCCCeEEEEEChh
Confidence 1111 35799999999993
No 193
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0073 Score=68.76 Aligned_cols=58 Identities=19% Similarity=0.215 Sum_probs=45.1
Q ss_pred cCCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhccc
Q 002044 172 DLSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNF 231 (976)
Q Consensus 172 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f 231 (976)
-+.+-+|+++-+++|.+.+.-..-.++-+-++++.+|++|||||.+|+.|+. ...+.|
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF 466 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF 466 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce
Confidence 3467899999999999998643322244678999999999999999999997 444444
No 194
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.96 E-value=0.034 Score=59.08 Aligned_cols=156 Identities=17% Similarity=0.220 Sum_probs=88.5
Q ss_pred CCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-----------HH
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-----------SI 241 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-----------~~ 241 (976)
++.|.+|+..+..+..++...+ ..-+..|.|.|-+|.|||.+.+++++... ...+|+++ .|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~---~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNS---CTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCC---cccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHH
Confidence 4678899999999999886543 12345669999999999999999998532 12567765 34
Q ss_pred HHHHhCCCCCc-------ccHHHHHHHHHH--HHc--CCceEEEEcCCCCCCccCcHh-HHHhh---cC-CCCCcEEEEE
Q 002044 242 IEALEGFAPNL-------GELNSLLLRIDA--FIA--RKKFLLILDDVWTDDYSKWEP-FRRCL---IN-GHRESRILVT 305 (976)
Q Consensus 242 ~~~l~~~~~~~-------~~~~~~~~~l~~--~l~--~k~~LlVlDdv~~~~~~~~~~-l~~~l---~~-~~~gs~iivT 305 (976)
+........+. .+....+..+.+ ... ++.++||||++.. ..+.+. +...+ .. -....-+|++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~--lrD~~a~ll~~l~~L~el~~~~~i~iil 154 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADA--LRDMDAILLQCLFRLYELLNEPTIVIIL 154 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHh--hhccchHHHHHHHHHHHHhCCCceEEEE
Confidence 44442111111 112222333333 122 3589999999943 222222 11111 11 1122344555
Q ss_pred cCchhhhhc---cCC--cceEecCCCCHHHHHHHHHHH
Q 002044 306 TRKETVARM---MES--TDVIFIKELSEQECWALFKRF 338 (976)
Q Consensus 306 tR~~~v~~~---~~~--~~~~~l~~L~~~~~~~Lf~~~ 338 (976)
+-....... ++. ..++....-+.+|-.+++.+.
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 443322222 344 335667788889988888653
No 195
>PRK06921 hypothetical protein; Provisional
Probab=96.96 E-value=0.0016 Score=68.47 Aligned_cols=98 Identities=20% Similarity=0.228 Sum_probs=54.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcc-cccceeehH-HHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCC
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISN-FEKRMWNCE-SIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDDV 278 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~-~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv 278 (976)
..-+.++|..|+|||+||..+++. +... ...++|+.. +++..+... .+... ...+.+ .+--||||||+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~~~l~~~l~~~------~~~~~-~~~~~~-~~~dlLiIDDl 186 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPFVEGFGDLKDD------FDLLE-AKLNRM-KKVEVLFIDDL 186 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEHHHHHHHHHHH------HHHHH-HHHHHh-cCCCEEEEecc
Confidence 457899999999999999999984 4333 334566654 444433221 11111 122223 24559999999
Q ss_pred C-----CCCccCcHh--HHHhhcCC-CCCcEEEEEcCc
Q 002044 279 W-----TDDYSKWEP--FRRCLING-HRESRILVTTRK 308 (976)
Q Consensus 279 ~-----~~~~~~~~~--l~~~l~~~-~~gs~iivTtR~ 308 (976)
. .+...+|.. +...+... ..+..+||||..
T Consensus 187 ~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 187 FKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred ccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 2 222334543 33322221 234468888874
No 196
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.95 E-value=0.021 Score=57.41 Aligned_cols=171 Identities=17% Similarity=0.171 Sum_probs=94.0
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH----------HHHHHHhCCCCCcccHH----HHHHHHHH
Q 002044 199 NAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE----------SIIEALEGFAPNLGELN----SLLLRIDA 264 (976)
Q Consensus 199 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~----------~~~~~l~~~~~~~~~~~----~~~~~l~~ 264 (976)
.+.+++.++|.-|.|||.+++..... ..+.=-+++.+.. .+...+.. .....+. .....+.+
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s--~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~--~p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLAS--LNEDQVAVVVIDKPTLSDATLLEAIVADLES--QPKVNVNAVLEQIDRELAA 124 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHh--cCCCceEEEEecCcchhHHHHHHHHHHHhcc--CccchhHHHHHHHHHHHHH
Confidence 35669999999999999999944321 1111111222222 23333333 2222233 23333333
Q ss_pred HH-cCCc-eEEEEcCCCCCCccCcHhHHHhhcCCCCCc---EEEEEcCch--------hhhhccCCcce-EecCCCCHHH
Q 002044 265 FI-ARKK-FLLILDDVWTDDYSKWEPFRRCLINGHRES---RILVTTRKE--------TVARMMESTDV-IFIKELSEQE 330 (976)
Q Consensus 265 ~l-~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs---~iivTtR~~--------~v~~~~~~~~~-~~l~~L~~~~ 330 (976)
.. +++| ..+++|+......+..+.++....-...++ +|+..-..+ .....-....+ |++.|++.++
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~ 204 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAE 204 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHH
Confidence 33 4677 899999996655555555554432222222 244443321 11111112334 9999999999
Q ss_pred HHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHHhh
Q 002044 331 CWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTIGS 374 (976)
Q Consensus 331 ~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 374 (976)
...++....-+.... .+---.+....|.....|.|.+|..++.
T Consensus 205 t~~yl~~~Le~a~~~-~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 205 TGLYLRHRLEGAGLP-EPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHhccCCC-cccCChhHHHHHHHHhccchHHHHHHHH
Confidence 888888776444221 1111134455689999999999987764
No 197
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.93 E-value=0.00083 Score=72.19 Aligned_cols=50 Identities=20% Similarity=0.214 Sum_probs=42.5
Q ss_pred ccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcc
Q 002044 175 EVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
+++|.++.++++++++.....+.....+++.++|++|+||||||+.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 79999999999999998655432345689999999999999999999874
No 198
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.92 E-value=0.011 Score=62.50 Aligned_cols=21 Identities=43% Similarity=0.498 Sum_probs=18.9
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-|.+.|.+|+|||++|+.+++
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999987
No 199
>PRK07261 topology modulation protein; Provisional
Probab=96.90 E-value=0.0019 Score=63.20 Aligned_cols=65 Identities=18% Similarity=0.319 Sum_probs=42.2
Q ss_pred EEEEEecCCchHHHHHHHHhcccchh-cccccceeehHHHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCC
Q 002044 203 IISLVGMGGIGKTTLAQFAYNDEDVI-SNFEKRMWNCESIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDDVW 279 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 279 (976)
.|.|+|++|+||||||+.+.....+. -+.|...|-. .....+.++....+.+.+.+.+ .|+|+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~--wIidg~~ 67 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP----------NWQERDDDDMIADISNFLLKHD--WIIDGNY 67 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc----------ccccCCHHHHHHHHHHHHhCCC--EEEcCcc
Confidence 47999999999999999987632211 2344444521 1112234566777777787776 6888873
No 200
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.89 E-value=0.0029 Score=71.45 Aligned_cols=181 Identities=16% Similarity=0.157 Sum_probs=105.4
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchh--cccc--cceeehHHHHHHHhCCC
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVI--SNFE--KRMWNCESIIEALEGFA 249 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~f~--~~~wv~~~~~~~l~~~~ 249 (976)
++++|-+.-...|...+.... -..--...|.-|+||||+|+.++.-.... ...+ ..+-.|-+|.. +..
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~---g~~ 87 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINE---GSL 87 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhc---CCc
Confidence 467999999999999887432 23455778999999999999887521111 1111 11111111111 111
Q ss_pred CCcccHH-------HHHHHHHHHH-----cCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCch-hhhhc-c
Q 002044 250 PNLGELN-------SLLLRIDAFI-----ARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKE-TVARM-M 315 (976)
Q Consensus 250 ~~~~~~~-------~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~-~ 315 (976)
.+.-+++ +-++.|.+.. .++.=+.|+|.|.--....|..+...+-.-....+.|+.|.+. .+... .
T Consensus 88 ~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIl 167 (515)
T COG2812 88 IDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTIL 167 (515)
T ss_pred ccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhh
Confidence 1111111 1122233332 2344488999996555567777776666555556666666654 33332 3
Q ss_pred CCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCc
Q 002044 316 ESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLP 366 (976)
Q Consensus 316 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 366 (976)
.....|.++.++.++-...+...+-.......+ +...-|++..+|..
T Consensus 168 SRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~----~aL~~ia~~a~Gs~ 214 (515)
T COG2812 168 SRCQRFDFKRLDLEEIAKHLAAILDKEGINIEE----DALSLIARAAEGSL 214 (515)
T ss_pred hccccccccCCCHHHHHHHHHHHHHhcCCccCH----HHHHHHHHHcCCCh
Confidence 457889999999999999888877443333332 33334666666644
No 201
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.86 E-value=0.0021 Score=69.53 Aligned_cols=101 Identities=19% Similarity=0.272 Sum_probs=56.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-HHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCCC
Q 002044 202 QIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDDVWT 280 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 280 (976)
.-+.++|..|+|||.||..+++. ....-..++|+++ +++..+.....+. .. ..... .+.+. .-=||||||+..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~~~l~~~l~~~~~~~-~~-~~~~~-~~~l~-~~DLLIIDDlG~ 257 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTADELIEILREIRFNN-DK-ELEEV-YDLLI-NCDLLIIDDLGT 257 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEHHHHHHHHHHHHhcc-ch-hHHHH-HHHhc-cCCEEEEeccCC
Confidence 56999999999999999999984 3333334666665 4444443211110 00 11111 22232 234899999965
Q ss_pred CCccCcHh--HHHhhcCC-CCCcEEEEEcCc
Q 002044 281 DDYSKWEP--FRRCLING-HRESRILVTTRK 308 (976)
Q Consensus 281 ~~~~~~~~--l~~~l~~~-~~gs~iivTtR~ 308 (976)
+....|.. +...+... ..+-.+||||..
T Consensus 258 e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 258 EKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 54444432 32222221 234568999974
No 202
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.00058 Score=69.12 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=40.6
Q ss_pred hhcCCCCCCCceEEEeecCCCCCC-cccccccccccEEEEeCCCCCCCCCC-------CCCCCCcceeecc
Q 002044 766 CEALQPPPNLESLQITGFKGRTLM-LSWIVSLNKLKKLRLLFCDKCEVMPA-------LGILPSLEVLKIR 828 (976)
Q Consensus 766 ~~~l~~~~~L~~L~L~~~~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~l~~-------l~~L~~L~~L~L~ 828 (976)
..+..+++.+.-|+|..+.+.... -..+..++.|+.|.+.+++..+.+.. ++.|++++.|+=+
T Consensus 217 ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 217 EKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred cccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 345667777778888776653210 01123688888888888887766542 4577788777654
No 203
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.83 E-value=0.012 Score=63.30 Aligned_cols=171 Identities=10% Similarity=0.047 Sum_probs=98.2
Q ss_pred HHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhc---ccccceeehHHHHHHHhCCCC--------
Q 002044 182 EKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVIS---NFEKRMWNCESIIEALEGFAP-------- 250 (976)
Q Consensus 182 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~f~~~~wv~~~~~~~l~~~~~-------- 250 (976)
.-+.+...+... .-.....++|+.|+||+++|..++.-.--.. .-.|...-....+.. +..+
T Consensus 10 ~~~~l~~~~~~~-----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~--g~HPD~~~i~p~ 82 (325)
T PRK06871 10 TYQQITQAFQQG-----LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQA--GNHPDFHILEPI 82 (325)
T ss_pred HHHHHHHHHHcC-----CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhc--CCCCCEEEEccc
Confidence 334555555431 2346788999999999999998875211001 011111100111110 1111
Q ss_pred --CcccHHHHHHHHHHHH-----cCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCch-hhhhcc-CCcceE
Q 002044 251 --NLGELNSLLLRIDAFI-----ARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKE-TVARMM-ESTDVI 321 (976)
Q Consensus 251 --~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~ 321 (976)
..-.+++. +.+.+.+ .+++-++|+|++..-.......+...+-.-..++.+|++|.+. .+...+ .....+
T Consensus 83 ~~~~I~id~i-R~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~ 161 (325)
T PRK06871 83 DNKDIGVDQV-REINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTW 161 (325)
T ss_pred cCCCCCHHHH-HHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEE
Confidence 01122222 2233333 2456688899997665566677777777766777777777654 444332 346789
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHH
Q 002044 322 FIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAA 369 (976)
Q Consensus 322 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 369 (976)
.+.+++.++..+.+..... . . ...+...+..++|.|+.+
T Consensus 162 ~~~~~~~~~~~~~L~~~~~---~--~----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQSS---A--E----ISEILTALRINYGRPLLA 200 (325)
T ss_pred eCCCCCHHHHHHHHHHHhc---c--C----hHHHHHHHHHcCCCHHHH
Confidence 9999999999988876531 1 1 112455788899999643
No 204
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.79 E-value=0.003 Score=70.58 Aligned_cols=150 Identities=15% Similarity=0.186 Sum_probs=81.2
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhccccc--ceeehHHHHHHHhCCCCC
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEK--RMWNCESIIEALEGFAPN 251 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~--~~wv~~~~~~~l~~~~~~ 251 (976)
..++||++.++.+...+.... -|.|.|.+|+|||++|+.+.........|.. +-|.. ...+.+..
T Consensus 20 ~~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~ftt---p~DLfG~l-- 86 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFST---PEEVFGPL-- 86 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecC---cHHhcCcH--
Confidence 468999999999988887432 4789999999999999999873211122321 11111 11111110
Q ss_pred cccHHHH--HHHHHHHHcC---CceEEEEcCCCCCCccCcHhHHHhhcCCC---------CCcEEEEEcCchhhh-----
Q 002044 252 LGELNSL--LLRIDAFIAR---KKFLLILDDVWTDDYSKWEPFRRCLINGH---------RESRILVTTRKETVA----- 312 (976)
Q Consensus 252 ~~~~~~~--~~~l~~~l~~---k~~LlVlDdv~~~~~~~~~~l~~~l~~~~---------~gs~iivTtR~~~v~----- 312 (976)
+.... ...+.....+ .--++++|+++.........+...+.... -..++++++.+.-..
T Consensus 87 --~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~l 164 (498)
T PRK13531 87 --SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSL 164 (498)
T ss_pred --HHhhhhhcCchhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCch
Confidence 00000 0011111111 11289999998776666666666653221 123566655543221
Q ss_pred -hccCC-cceEecCCCCHHHH-HHHHHHH
Q 002044 313 -RMMES-TDVIFIKELSEQEC-WALFKRF 338 (976)
Q Consensus 313 -~~~~~-~~~~~l~~L~~~~~-~~Lf~~~ 338 (976)
..+.. ...+.+++++.++. .+++...
T Consensus 165 eAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 165 EALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred HHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 11111 33678899985444 7777653
No 205
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.77 E-value=0.0023 Score=57.15 Aligned_cols=21 Identities=48% Similarity=0.564 Sum_probs=18.7
Q ss_pred EEEEecCCchHHHHHHHHhcc
Q 002044 204 ISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 204 v~I~G~gGiGKTtLa~~v~~~ 224 (976)
|-|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998873
No 206
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.77 E-value=2.4e-05 Score=87.90 Aligned_cols=40 Identities=23% Similarity=0.027 Sum_probs=22.5
Q ss_pred CCCCCceEEEeecCCCCCC-cccccccccccEEEEeCCCCC
Q 002044 771 PPPNLESLQITGFKGRTLM-LSWIVSLNKLKKLRLLFCDKC 810 (976)
Q Consensus 771 ~~~~L~~L~L~~~~~~~~~-p~~~~~l~~L~~L~L~~~~~~ 810 (976)
.+.+|+.|++++|-+.... -..+..+..|+.|.|.+|+.+
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 3344555555554433220 122336788999999998754
No 207
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.76 E-value=0.052 Score=59.45 Aligned_cols=198 Identities=14% Similarity=0.178 Sum_probs=116.0
Q ss_pred chhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHH-HHHhcccc-------------------------hhcccc
Q 002044 179 RVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLA-QFAYNDED-------------------------VISNFE 232 (976)
Q Consensus 179 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~-------------------------~~~~f~ 232 (976)
|.+.+++|..||... .-..|.|.|+-|.||+.|+ .++.++.+ --++|+
T Consensus 1 R~e~~~~L~~wL~e~------~~TFIvV~GPrGSGK~elV~d~~L~~r~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNEN------PNTFIVVQGPRGSGKRELVMDHVLKDRKNVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcC------CCeEEEEECCCCCCccHHHHHHHHhCCCCEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 667889999999853 3458999999999999999 66655311 123444
Q ss_pred cceeehH--HH----HHHHhCCCCCc-ccHHHHHHH--------HHH-------------------HHc---CCceEEEE
Q 002044 233 KRMWNCE--SI----IEALEGFAPNL-GELNSLLLR--------IDA-------------------FIA---RKKFLLIL 275 (976)
Q Consensus 233 ~~~wv~~--~~----~~~l~~~~~~~-~~~~~~~~~--------l~~-------------------~l~---~k~~LlVl 275 (976)
.--|.+- .+ .+.+.|...+. ...+..... +++ +|. .+|-+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 4445432 11 12222322222 122211111 111 111 23669999
Q ss_pred cCCCCCC---ccCcHhHHHh---hcCCCCCcEEEEEcCchhhhh----ccC--CcceEecCCCCHHHHHHHHHHHhcCCC
Q 002044 276 DDVWTDD---YSKWEPFRRC---LINGHRESRILVTTRKETVAR----MME--STDVIFIKELSEQECWALFKRFACFGR 343 (976)
Q Consensus 276 Ddv~~~~---~~~~~~l~~~---l~~~~~gs~iivTtR~~~v~~----~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~ 343 (976)
||.-... ..-|+.+... +- ..+-.+||++|-+..... .+. ....+.|...+.+.|.++...+.-...
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~ 233 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAASLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDT 233 (431)
T ss_pred cchhccCcccchHHHHHHHHHHHHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcccc
Confidence 9984321 1222333221 11 234468999887654433 332 246788999999999999998874331
Q ss_pred CC------------Ccc----hhHHHHHHHHHhhcCCCchHHHHHhhhhccCCCHH
Q 002044 344 SL------------SEC----EQLEEIGKKIVGKCKGLPLAAKTIGSLLRFKRTRE 383 (976)
Q Consensus 344 ~~------------~~~----~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~ 383 (976)
.. ... .....-....++..||--.-+..+++.++.+.+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 234 EDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred cccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 11 000 12334445688889999999999999998776554
No 208
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.72 E-value=0.0061 Score=57.94 Aligned_cols=107 Identities=21% Similarity=0.145 Sum_probs=59.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcccchhc--------ccccceeehH--HHHHHHhCC-------C--CCcccH-------
Q 002044 202 QIISLVGMGGIGKTTLAQFAYNDEDVIS--------NFEKRMWNCE--SIIEALEGF-------A--PNLGEL------- 255 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~--------~f~~~~wv~~--~~~~~l~~~-------~--~~~~~~------- 255 (976)
.+|-|++-.|.||||+|...+- +... +|-..-|-.. .+++.+... . ....+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHH
Confidence 3678888889999999977654 2211 2211112221 344443210 0 000111
Q ss_pred HHHHHHHHHHHcCCc-eEEEEcCCCC---CCccCcHhHHHhhcCCCCCcEEEEEcCchh
Q 002044 256 NSLLLRIDAFIARKK-FLLILDDVWT---DDYSKWEPFRRCLINGHRESRILVTTRKET 310 (976)
Q Consensus 256 ~~~~~~l~~~l~~k~-~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 310 (976)
.+..+..++.+.... =|+|||++-. -.....+.+...+.....+..||+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 112233344444444 4999999832 223455667777776667789999999854
No 209
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.72 E-value=0.03 Score=61.24 Aligned_cols=157 Identities=10% Similarity=0.089 Sum_probs=89.3
Q ss_pred cccc-chhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHh-CCCC--
Q 002044 175 EVRG-RVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALE-GFAP-- 250 (976)
Q Consensus 175 ~~~G-r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~-~~~~-- 250 (976)
.++| -+..++.+...+... .-.....++|+.|+||||+|+.+.+..--........+-....-..+. +..+
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~ 80 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDV 80 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCE
Confidence 4566 566677777777532 235677999999999999998886621100101100000000001111 1100
Q ss_pred -------CcccHHHHHHHHHHHH-----cCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCch-hhhhcc-C
Q 002044 251 -------NLGELNSLLLRIDAFI-----ARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKE-TVARMM-E 316 (976)
Q Consensus 251 -------~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~-~ 316 (976)
....+++... +.+.+ .+.+-++|+|++..-+......+...+..-..++.+|++|.+. .+...+ .
T Consensus 81 ~~i~~~~~~i~id~ir~-l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrS 159 (329)
T PRK08058 81 HLVAPDGQSIKKDQIRY-LKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILS 159 (329)
T ss_pred EEeccccccCCHHHHHH-HHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHh
Confidence 1112222222 22322 2445579999996555555666777777666677777777653 333322 3
Q ss_pred CcceEecCCCCHHHHHHHHHH
Q 002044 317 STDVIFIKELSEQECWALFKR 337 (976)
Q Consensus 317 ~~~~~~l~~L~~~~~~~Lf~~ 337 (976)
....+++.+++.++..+.+..
T Consensus 160 Rc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 160 RCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred hceeeeCCCCCHHHHHHHHHH
Confidence 467899999999999888865
No 210
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.71 E-value=0.0079 Score=59.52 Aligned_cols=121 Identities=20% Similarity=0.262 Sum_probs=73.2
Q ss_pred ccCCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCC
Q 002044 171 IDLSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAP 250 (976)
Q Consensus 171 ~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~ 250 (976)
++-..++|.+...+.+++--..-.. ....--|.+||.-|+||+.|++++.+ .+....-..+=|+- .
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~--G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glrLVEV~k----------~ 122 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAE--GLPANNVLLWGARGTGKSSLVKALLN--EYADEGLRLVEVDK----------E 122 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHc--CCcccceEEecCCCCChHHHHHHHHH--HHHhcCCeEEEEcH----------H
Confidence 3445789998888888765432222 22344678999999999999999998 44444433222211 1
Q ss_pred CcccHHHHHHHHHHHHc--CCceEEEEcCCCC-CCccCcHhHHHhhcCC---CCCcEEEEEcCch
Q 002044 251 NLGELNSLLLRIDAFIA--RKKFLLILDDVWT-DDYSKWEPFRRCLING---HRESRILVTTRKE 309 (976)
Q Consensus 251 ~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~---~~gs~iivTtR~~ 309 (976)
+..+ ...+.+.|+ .+||.|+.||..- ++...+..++..+..+ .+...++..|.++
T Consensus 123 dl~~----Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 DLAT----LPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred HHhh----HHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 1112 223444443 5799999999943 3345667777777653 2334455555543
No 211
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.70 E-value=0.00074 Score=80.29 Aligned_cols=127 Identities=24% Similarity=0.187 Sum_probs=82.0
Q ss_pred cCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccccCcccc
Q 002044 550 ARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLPETCC 627 (976)
Q Consensus 550 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp~~i~ 627 (976)
-.+|+.|++++... .....+..+...++.|+.|.+.|..- .-.++-.-..++++|+.||+ +++..+ ..++
T Consensus 121 r~nL~~LdI~G~~~---~s~~W~~kig~~LPsL~sL~i~~~~~----~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS 192 (699)
T KOG3665|consen 121 RQNLQHLDISGSEL---FSNGWPKKIGTMLPSLRSLVISGRQF----DNDDFSQLCASFPNLRSLDISGTNISNL-SGIS 192 (699)
T ss_pred HHhhhhcCccccch---hhccHHHHHhhhCcccceEEecCcee----cchhHHHHhhccCccceeecCCCCccCc-HHHh
Confidence 35677788777542 12233445567889999999985321 11122234567889999999 677877 7899
Q ss_pred ccCCccEEecCCCCCCcccc--hhhcccCCCcEEEecccccccCcc-------cccCCCCCCcCCce
Q 002044 628 ELLNLQTLNMCGSPGLKRLP--QGIGKLINLRHLMFEVDYLEYMPK-------GIERLTSLRTLSEF 685 (976)
Q Consensus 628 ~L~~L~~L~l~~~~~l~~lp--~~i~~l~~L~~L~l~~~~l~~lp~-------~i~~l~~L~~L~~~ 685 (976)
+|+|||+|.+++=. +..-+ ..+.+|++|++||++......-+. .-..|++|+.|+..
T Consensus 193 ~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred ccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence 99999999998754 33222 357889999999996654333221 11236677766643
No 212
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.68 E-value=0.006 Score=75.33 Aligned_cols=132 Identities=14% Similarity=0.189 Sum_probs=74.8
Q ss_pred CccccchhHHHHHHHHHhcccc---cCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH------HHHHH
Q 002044 174 SEVRGRVEEKNALKSKLLCKSS---EQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE------SIIEA 244 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~------~~~~~ 244 (976)
..++|.+..++.+...+..... ........+.++|+.|+|||+||+.+++. .-..-...+-+.. .-...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTVSK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccHHH
Confidence 5689999999999888763221 11233456789999999999999998762 2111011111111 01111
Q ss_pred HhCCCCCcccHHHHHHHHHHHHcCCc-eEEEEcCCCCCCccCcHhHHHhhcCC-----------CCCcEEEEEcCc
Q 002044 245 LEGFAPNLGELNSLLLRIDAFIARKK-FLLILDDVWTDDYSKWEPFRRCLING-----------HRESRILVTTRK 308 (976)
Q Consensus 245 l~~~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtR~ 308 (976)
+.+..++....++ ...+.+.++.++ .+++||++...++..++.+...+..+ -..+-||+||..
T Consensus 587 l~g~~~gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 587 LIGSPPGYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred hcCCCCcccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 2221111111111 123445555565 48999999777777777777766543 134567777764
No 213
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.67 E-value=0.0021 Score=67.11 Aligned_cols=81 Identities=23% Similarity=0.251 Sum_probs=48.3
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-HHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCC
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDDV 278 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv 278 (976)
...-+.++|.+|+|||.||.++.++ +...--.+.++++ +++..+.....+. ....++.+.+ .+-=||||||+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~~~el~~~Lk~~~~~~----~~~~~l~~~l-~~~dlLIiDDl 176 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFITAPDLLSKLKAAFDEG----RLEEKLLREL-KKVDLLIIDDI 176 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHHHHHHHhcC----chHHHHHHHh-hcCCEEEEecc
Confidence 3456899999999999999999994 4332233555554 5665554432221 1112222212 23348999999
Q ss_pred CCCCccCcH
Q 002044 279 WTDDYSKWE 287 (976)
Q Consensus 279 ~~~~~~~~~ 287 (976)
..+....|.
T Consensus 177 G~~~~~~~~ 185 (254)
T COG1484 177 GYEPFSQEE 185 (254)
T ss_pred cCccCCHHH
Confidence 765555554
No 214
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.64 E-value=0.0033 Score=68.82 Aligned_cols=136 Identities=15% Similarity=0.178 Sum_probs=76.6
Q ss_pred ccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceEeCccccCCCcCcccccccCCCCCCCCCccCccCCcccee
Q 002044 795 SLNKLKKLRLLFCDKCEVMPALGILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIHIQDGSMSSSSSSSANIAFPKLKEL 874 (976)
Q Consensus 795 ~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L 874 (976)
.+.+++.|++++| .+..+|. ..++|++|.+++|..++.++..+ ...++.+.+.+|..... --+.|+.|
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s-------LP~sLe~L 117 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG-------LPESVRSL 117 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc-------cccccceE
Confidence 5789999999999 6777773 34579999999999887777533 12344455544421111 11245555
Q ss_pred eecccccccccccCCCccccCCCcceEeeecCCCC--CCCCcCCCCCCCCCeEEEccCcchHHhhccCCCCCcccccCCC
Q 002044 875 KFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKL--NSLPDQLLQSTTLEELEIIRCPILEERFKKDTGEDWSKITHIP 952 (976)
Q Consensus 875 ~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L--~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l~ 952 (976)
.+.+ ..+..+...| ++|+.|.+.++... ..+|.. -.++|+.|.+.+|..+. .+..++ .++.
T Consensus 118 ~L~~-n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~------LP~~LP--~SLk 180 (426)
T PRK15386 118 EIKG-SATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII------LPEKLP--ESLQ 180 (426)
T ss_pred EeCC-CCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCCCccc------Cccccc--ccCc
Confidence 5432 2222222211 35666665432211 111211 12589999999996442 222232 5788
Q ss_pred ceeeccc
Q 002044 953 KIKIHGE 959 (976)
Q Consensus 953 ~l~~~~n 959 (976)
.|.++++
T Consensus 181 ~L~ls~n 187 (426)
T PRK15386 181 SITLHIE 187 (426)
T ss_pred EEEeccc
Confidence 8888765
No 215
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.64 E-value=0.0091 Score=56.99 Aligned_cols=60 Identities=18% Similarity=0.203 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHcCCceEEEEcCCCC-CCc-cCcHhHHHhhcC-CCCCcEEEEEcCchhhhhcc
Q 002044 255 LNSLLLRIDAFIARKKFLLILDDVWT-DDY-SKWEPFRRCLIN-GHRESRILVTTRKETVARMM 315 (976)
Q Consensus 255 ~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~-~~~~~l~~~l~~-~~~gs~iivTtR~~~v~~~~ 315 (976)
-++..-.|.+.+-+++-+++-|.--- -|+ ..|+-+ ..|.. +..|+.||++|.+.++-..+
T Consensus 141 GEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im-~lfeeinr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 141 GEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM-RLFEEINRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred hHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHH-HHHHHHhhcCcEEEEEeccHHHHHhc
Confidence 34445557777888999999996421 122 344443 33433 56799999999999877665
No 216
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.62 E-value=0.00011 Score=65.64 Aligned_cols=87 Identities=22% Similarity=0.259 Sum_probs=44.0
Q ss_pred hcCCCcceEEecCcccccCCCCcccCccccCC-CccceecC--ccccccCccccccCCccEEecCCCCCCcccchhhccc
Q 002044 577 DQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKL-RHLRYLKL--YLVEKLPETCCELLNLQTLNMCGSPGLKRLPQGIGKL 653 (976)
Q Consensus 577 ~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L-~~Lr~L~L--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l 653 (976)
.....|...+|+ ++.+.++|+.+... +.+..|+| +.+..+|..+..++.|+.|+++.|+ +...|..|..|
T Consensus 50 ~~~~el~~i~ls------~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L 122 (177)
T KOG4579|consen 50 SKGYELTKISLS------DNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPL 122 (177)
T ss_pred hCCceEEEEecc------cchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHH
Confidence 344445555555 45555555544332 24555555 4455555555555555555555554 44555555555
Q ss_pred CCCcEEEecccccccCc
Q 002044 654 INLRHLMFEVDYLEYMP 670 (976)
Q Consensus 654 ~~L~~L~l~~~~l~~lp 670 (976)
.+|-.|+...+.+..+|
T Consensus 123 ~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 123 IKLDMLDSPENARAEID 139 (177)
T ss_pred HhHHHhcCCCCccccCc
Confidence 55555555444444443
No 217
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.61 E-value=0.014 Score=71.44 Aligned_cols=180 Identities=14% Similarity=0.097 Sum_probs=93.2
Q ss_pred CCccccchhHHHHHHHHHhccccc-------CCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-HHHHH
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSSE-------QTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SIIEA 244 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~ 244 (976)
-.++.|.+..++++.+++..+-.. +-...+-|.++|.+|+|||+||+.+++. ....| +.+.. .+...
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~---i~i~~~~i~~~ 251 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF---ISINGPEIMSK 251 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE---EEEecHHHhcc
Confidence 345889999999988877432110 0123467889999999999999999983 33232 22222 12111
Q ss_pred HhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCCCCCc------c-----CcHhHHHhhcCC-CCCcEEEE-EcCchh-
Q 002044 245 LEGFAPNLGELNSLLLRIDAFIARKKFLLILDDVWTDDY------S-----KWEPFRRCLING-HRESRILV-TTRKET- 310 (976)
Q Consensus 245 l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~-----~~~~l~~~l~~~-~~gs~iiv-TtR~~~- 310 (976)
. .+ .....+...+.......+.+|++|++..-.. . ....+...+... ..+..++| ||....
T Consensus 252 ~----~g-~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ 326 (733)
T TIGR01243 252 Y----YG-ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDA 326 (733)
T ss_pred c----cc-HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhh
Confidence 1 11 1112223333344456678999999842100 0 112233323221 22334444 444322
Q ss_pred hhhccC----CcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCch
Q 002044 311 VARMME----STDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPL 367 (976)
Q Consensus 311 v~~~~~----~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 367 (976)
+...+. -...+.+...+.++-.+++....-. ........ ...+++.+.|.--
T Consensus 327 ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~-~~l~~d~~----l~~la~~t~G~~g 382 (733)
T TIGR01243 327 LDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN-MPLAEDVD----LDKLAEVTHGFVG 382 (733)
T ss_pred cCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC-CCCccccC----HHHHHHhCCCCCH
Confidence 211111 1346778888888888888754421 11111112 3447777777543
No 218
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.56 E-value=0.015 Score=56.29 Aligned_cols=143 Identities=19% Similarity=0.203 Sum_probs=76.6
Q ss_pred cchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHh-CCCC------
Q 002044 178 GRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALE-GFAP------ 250 (976)
Q Consensus 178 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~-~~~~------ 250 (976)
|-++..+.+.+.+... .-...+.++|..|+||+|+|..+++..--........-.+ .....+. +..+
T Consensus 1 gq~~~~~~L~~~~~~~-----~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c-~~c~~~~~~~~~d~~~~~ 74 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGEC-RSCRRIEEGNHPDFIIIK 74 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSS-HHHHHHHTT-CTTEEEEE
T ss_pred CcHHHHHHHHHHHHcC-----CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCC-HHHHHHHhccCcceEEEe
Confidence 4566677777777632 2345789999999999999988876311111111000000 0111111 1111
Q ss_pred -C----cccHHHHHHHHHHHHc-----CCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCchh-hhhcc-CCc
Q 002044 251 -N----LGELNSLLLRIDAFIA-----RKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKET-VARMM-EST 318 (976)
Q Consensus 251 -~----~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~-~~~ 318 (976)
. .-..++. ..+.+.+. +++=++|+||+..-....+..+...+-....++++|++|++.. +...+ ...
T Consensus 75 ~~~~~~~i~i~~i-r~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc 153 (162)
T PF13177_consen 75 PDKKKKSIKIDQI-REIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRC 153 (162)
T ss_dssp TTTSSSSBSHHHH-HHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTS
T ss_pred cccccchhhHHHH-HHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhc
Confidence 1 1223333 35555543 3466899999977666777888888887778899988888654 33222 335
Q ss_pred ceEecCCCC
Q 002044 319 DVIFIKELS 327 (976)
Q Consensus 319 ~~~~l~~L~ 327 (976)
..+.+.+++
T Consensus 154 ~~i~~~~ls 162 (162)
T PF13177_consen 154 QVIRFRPLS 162 (162)
T ss_dssp EEEEE----
T ss_pred eEEecCCCC
Confidence 566666653
No 219
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.54 E-value=0.00017 Score=81.41 Aligned_cols=98 Identities=24% Similarity=0.350 Sum_probs=49.9
Q ss_pred HhcCCCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccccCc-cccccCCccEEecCCCCCCcccchhhcc
Q 002044 576 FDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLPE-TCCELLNLQTLNMCGSPGLKRLPQGIGK 652 (976)
Q Consensus 576 ~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~i~~ 652 (976)
+.-++.|+.|||+ .+.+.+. ..+..|.+|+.||| +.+..+|. +...+. |+.|++++|. +.++ .+|.+
T Consensus 183 Lqll~ale~LnLs------hNk~~~v-~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~-l~tL-~gie~ 252 (1096)
T KOG1859|consen 183 LQLLPALESLNLS------HNKFTKV-DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA-LTTL-RGIEN 252 (1096)
T ss_pred HHHHHHhhhhccc------hhhhhhh-HHHHhcccccccccccchhccccccchhhhh-heeeeecccH-HHhh-hhHHh
Confidence 3344556666666 3333333 24556666666666 44444543 111222 6666666665 5554 34666
Q ss_pred cCCCcEEEecccccccCc--ccccCCCCCCcCC
Q 002044 653 LINLRHLMFEVDYLEYMP--KGIERLTSLRTLS 683 (976)
Q Consensus 653 l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~ 683 (976)
|.+|++||++.|-+...- ..++.|..|..|.
T Consensus 253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~ 285 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLW 285 (1096)
T ss_pred hhhhhccchhHhhhhcchhhhHHHHHHHHHHHh
Confidence 666666666665554332 1134444444443
No 220
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.54 E-value=0.019 Score=61.66 Aligned_cols=171 Identities=11% Similarity=0.077 Sum_probs=99.0
Q ss_pred HHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhc--ccccceeehHHHHHHHhCCCC---------
Q 002044 182 EKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVIS--NFEKRMWNCESIIEALEGFAP--------- 250 (976)
Q Consensus 182 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~~~l~~~~~--------- 250 (976)
..+++.+.+.. ..-...+-++|+.|+||+++|..++.-.--.. .-.|...-+...+.. +..+
T Consensus 11 ~~~~l~~~~~~-----~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~--g~HPD~~~i~p~~ 83 (319)
T PRK06090 11 VWQNWKAGLDA-----GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQS--GNHPDLHVIKPEK 83 (319)
T ss_pred HHHHHHHHHHc-----CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHc--CCCCCEEEEecCc
Confidence 34455555542 22456889999999999999988865210000 001110000111110 1101
Q ss_pred --CcccHHHHHHHHHHHHc-----CCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCc-hhhhhcc-CCcceE
Q 002044 251 --NLGELNSLLLRIDAFIA-----RKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRK-ETVARMM-ESTDVI 321 (976)
Q Consensus 251 --~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~-~~~~~~ 321 (976)
..-.+++. +.+.+.+. +.+-++|+|++..-.......+...+..-..++.+|++|.+ ..+...+ .....+
T Consensus 84 ~~~~I~vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~ 162 (319)
T PRK06090 84 EGKSITVEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQW 162 (319)
T ss_pred CCCcCCHHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeE
Confidence 11123333 23333432 34558899999665556677787777776666777776665 3444333 446789
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHH
Q 002044 322 FIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTI 372 (976)
Q Consensus 322 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 372 (976)
.+.+++.++..+.+.... . . .+..+++.++|.|+....+
T Consensus 163 ~~~~~~~~~~~~~L~~~~---~---~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 163 VVTPPSTAQAMQWLKGQG---I---T------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred eCCCCCHHHHHHHHHHcC---C---c------hHHHHHHHcCCCHHHHHHH
Confidence 999999999999886531 1 1 1245789999999976554
No 221
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.50 E-value=0.0083 Score=72.25 Aligned_cols=116 Identities=15% Similarity=0.143 Sum_probs=67.1
Q ss_pred CccccchhHHHHHHHHHhcccc---cCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH------HHHHH
Q 002044 174 SEVRGRVEEKNALKSKLLCKSS---EQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE------SIIEA 244 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~------~~~~~ 244 (976)
..++|.++.++.+.+.+..... ........+.++|++|+|||++|+.++.. .... .+.++. .....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~~~---~i~id~se~~~~~~~~~ 532 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LGIE---LLRFDMSEYMERHTVSR 532 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hCCC---cEEeechhhcccccHHH
Confidence 3588999999999888863211 01223567899999999999999999873 2221 122221 11223
Q ss_pred HhCCCCCcccHHHHHHHHHHHHcCC-ceEEEEcCCCCCCccCcHhHHHhhcC
Q 002044 245 LEGFAPNLGELNSLLLRIDAFIARK-KFLLILDDVWTDDYSKWEPFRRCLIN 295 (976)
Q Consensus 245 l~~~~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~l~~~l~~ 295 (976)
+.+..++....+ ....+.+.++.+ ..+|+||++...+++.+..+...+..
T Consensus 533 LiG~~~gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~ 583 (758)
T PRK11034 533 LIGAPPGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDN 583 (758)
T ss_pred HcCCCCCccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhc
Confidence 333221111111 111233444444 45999999977666666767666643
No 222
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.017 Score=68.16 Aligned_cols=154 Identities=19% Similarity=0.223 Sum_probs=88.6
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchh-cccc----cceeehHHHHHHHhCC
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVI-SNFE----KRMWNCESIIEALEGF 248 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~----~~~wv~~~~~~~l~~~ 248 (976)
..++||+++++++++.|..... +-+ .++|.+|||||++|.-++. ++. +.-+ ..--++.++..-+.+.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K----NNP--vLiGEpGVGKTAIvEGLA~--rIv~g~VP~~L~~~~i~sLD~g~LvAGa 241 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK----NNP--VLVGEPGVGKTAIVEGLAQ--RIVNGDVPESLKDKRIYSLDLGSLVAGA 241 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC----CCC--eEecCCCCCHHHHHHHHHH--HHhcCCCCHHHcCCEEEEecHHHHhccc
Confidence 4589999999999999986542 222 4679999999999977766 221 1111 1111122333333332
Q ss_pred CCCcccHHHHHHHHHHHHc-CCceEEEEcCCCCC-------C-ccCcHh-HHHhhcCCCCCcEEEEEcCchhhhhc----
Q 002044 249 APNLGELNSLLLRIDAFIA-RKKFLLILDDVWTD-------D-YSKWEP-FRRCLINGHRESRILVTTRKETVARM---- 314 (976)
Q Consensus 249 ~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~-------~-~~~~~~-l~~~l~~~~~gs~iivTtR~~~v~~~---- 314 (976)
.. -.+.++....+.+.++ .+++.|++|.+..- . ..+... ++..|..+ .--.|=.||-++ .-..
T Consensus 242 ky-RGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG-eL~~IGATT~~E-YRk~iEKD 318 (786)
T COG0542 242 KY-RGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG-ELRCIGATTLDE-YRKYIEKD 318 (786)
T ss_pred cc-cCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC-CeEEEEeccHHH-HHHHhhhc
Confidence 22 2345555555555554 45899999998541 0 112222 33333322 222344444332 2111
Q ss_pred ---cCCcceEecCCCCHHHHHHHHHHH
Q 002044 315 ---MESTDVIFIKELSEQECWALFKRF 338 (976)
Q Consensus 315 ---~~~~~~~~l~~L~~~~~~~Lf~~~ 338 (976)
......+.+..-+.+++...++..
T Consensus 319 ~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 319 AALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred hHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 134578899999999999998754
No 223
>PHA00729 NTP-binding motif containing protein
Probab=96.48 E-value=0.01 Score=59.71 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=22.2
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhc
Q 002044 199 NAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 199 ~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+...|.|.|.+|+||||||..+.+
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3556789999999999999999988
No 224
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.48 E-value=0.012 Score=58.25 Aligned_cols=77 Identities=17% Similarity=0.324 Sum_probs=46.0
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCC-Cccc---HHHHHHHHHHHHcCCceEEEE
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAP-NLGE---LNSLLLRIDAFIARKKFLLIL 275 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~-~~~~---~~~~~~~l~~~l~~k~~LlVl 275 (976)
...+|.+.|+.|+||||+|+.+++ .....+...+++..+.+........ .... .......+.+.+......+|.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~~~d~~r~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~VI~ 83 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYLDGDELREILGHYGYDKQSRIEMALKRAKLAKFLADQGMIVIV 83 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEecHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 456999999999999999999998 5555666666665544443322211 1111 111122233444455567777
Q ss_pred cCC
Q 002044 276 DDV 278 (976)
Q Consensus 276 Ddv 278 (976)
|.+
T Consensus 84 ~~~ 86 (176)
T PRK05541 84 TTI 86 (176)
T ss_pred EeC
Confidence 876
No 225
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.00087 Score=67.93 Aligned_cols=186 Identities=15% Similarity=0.122 Sum_probs=99.9
Q ss_pred CCCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCC-CCCC
Q 002044 735 KKKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDK-CEVM 813 (976)
Q Consensus 735 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~-~~~l 813 (976)
.+..++.|+|.|+... .+.++...+..+|.|+.|+|+.|.....+-.--....+|+.|.|.+... ....
T Consensus 69 ~~~~v~elDL~~N~iS----------dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~ 138 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLIS----------DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQS 138 (418)
T ss_pred Hhhhhhhhhcccchhc----------cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhh
Confidence 3456777888777532 4466666777788888888888765433111112456888888877642 1111
Q ss_pred -CCCCCCCCcceeeccccccceEe--CccccCCC--cCcccccccCCCCCCCC-CccCccCCccceeeeccccccccccc
Q 002044 814 -PALGILPSLEVLKIRFMKSVKRV--GNEFLGTE--ISDHIHIQDGSMSSSSS-SSANIAFPKLKELKFFCLDEWEEWDF 887 (976)
Q Consensus 814 -~~l~~L~~L~~L~L~~~~~l~~~--~~~~~~~~--~~~~l~l~~~~~~~~~~-~~~~~~fp~L~~L~l~~l~~l~~~~~ 887 (976)
..+..+|.++.|.++.|. +..+ +.+....- ....+++..|...--.. ......||++..+.+..+| ++....
T Consensus 139 ~s~l~~lP~vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ 216 (418)
T KOG2982|consen 139 TSSLDDLPKVTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESS 216 (418)
T ss_pred hhhhhcchhhhhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhh
Confidence 235667777777777653 1111 11100000 00111111110000000 0012358888888887765 222222
Q ss_pred CCCccccCCCcceEeeecCCCCCCCC--cCCCCCCCCCeEEEccCcchH
Q 002044 888 GKEDITIMPQLSSMKISYCSKLNSLP--DQLLQSTTLEELEIIRCPILE 934 (976)
Q Consensus 888 ~~~~~~~l~~L~~L~l~~c~~L~~lp--~~l~~l~~L~~L~l~~c~~l~ 934 (976)
.++...+|.+-.|+++.+. +.+.. +.+..++.|..|.+.++|-..
T Consensus 217 -ek~se~~p~~~~LnL~~~~-idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 217 -EKGSEPFPSLSCLNLGANN-IDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred -cccCCCCCcchhhhhcccc-cccHHHHHHHcCCchhheeeccCCcccc
Confidence 1224567888777777653 55543 346678899999999887653
No 226
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.43 E-value=0.00074 Score=60.48 Aligned_cols=97 Identities=22% Similarity=0.273 Sum_probs=63.4
Q ss_pred CCcceEEecCcccccCCCCcccC---ccccCCCccceecC--ccccccCccccc-cCCccEEecCCCCCCcccchhhccc
Q 002044 580 TGLRVLRIEGMKSLIGSGTNEIP---KGIKKLRHLRYLKL--YLVEKLPETCCE-LLNLQTLNMCGSPGLKRLPQGIGKL 653 (976)
Q Consensus 580 ~~Lr~L~L~~~~~l~~~~~~~lp---~~i~~L~~Lr~L~L--~~~~~lp~~i~~-L~~L~~L~l~~~~~l~~lp~~i~~l 653 (976)
+-+..|+|++| .+..++ ..+....+|...+| +.++.+|+.+.. .+.+++|++.+|. +..+|.++..+
T Consensus 27 kE~h~ldLssc------~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam 99 (177)
T KOG4579|consen 27 KELHFLDLSSC------QLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAM 99 (177)
T ss_pred HHhhhcccccc------hhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhh
Confidence 34566677643 233333 33445566666677 567777776553 3467788887776 77788878888
Q ss_pred CCCcEEEecccccccCcccccCCCCCCcCC
Q 002044 654 INLRHLMFEVDYLEYMPKGIERLTSLRTLS 683 (976)
Q Consensus 654 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 683 (976)
+.|+.|+++.|.+...|.-|..|.+|-.|+
T Consensus 100 ~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 100 PALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred HHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 888888887777777777766655555553
No 227
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.43 E-value=0.029 Score=60.89 Aligned_cols=93 Identities=10% Similarity=0.111 Sum_probs=63.4
Q ss_pred CCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCc-hhhhhcc-CCcceEecCCCCHHHHHHHHHHHhcCCCCC
Q 002044 268 RKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRK-ETVARMM-ESTDVIFIKELSEQECWALFKRFACFGRSL 345 (976)
Q Consensus 268 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 345 (976)
+++-++|+|++..-....+..+...+..-.+++.+|++|.+ ..+...+ .....+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C--
Confidence 34558889999776667778888888776667766665554 4444332 346789999999999999887641 1
Q ss_pred CcchhHHHHHHHHHhhcCCCchHHHHH
Q 002044 346 SECEQLEEIGKKIVGKCKGLPLAAKTI 372 (976)
Q Consensus 346 ~~~~~~~~~~~~i~~~c~GlPLai~~~ 372 (976)
. + ...++..++|.|.....+
T Consensus 206 -~-~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 -A-D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -C-h-----HHHHHHHcCCCHHHHHHH
Confidence 1 1 122577889999755433
No 228
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.40 E-value=0.018 Score=60.73 Aligned_cols=41 Identities=37% Similarity=0.453 Sum_probs=33.0
Q ss_pred cccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHh
Q 002044 176 VRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAY 222 (976)
Q Consensus 176 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~ 222 (976)
+-+|..+..--.++|+ ++++..|.+.|.+|.|||.||-+..
T Consensus 226 i~prn~eQ~~ALdlLl------d~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 226 IRPRNAEQRVALDLLL------DDDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred cCcccHHHHHHHHHhc------CCCCCeEEeeccCCccHhHHHHHHH
Confidence 4457777777788887 4578999999999999999996653
No 229
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.39 E-value=0.034 Score=63.62 Aligned_cols=159 Identities=19% Similarity=0.107 Sum_probs=81.4
Q ss_pred CccccchhHHHHHHHHHhc---c-cccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCC
Q 002044 174 SEVRGRVEEKNALKSKLLC---K-SSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFA 249 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~---~-~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~ 249 (976)
.++.|.+..++.+.+.... . ...+-...+-|.++|++|.|||.+|+.+++. ....|- -+... .+.+..
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~~---~l~~~---~l~~~~ 299 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPLL---RLDVG---KLFGGI 299 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCEE---EEEhH---Hhcccc
Confidence 3567777666555543211 0 0001234567899999999999999999983 222221 11110 111111
Q ss_pred CCcccHHHHHHHHHHHHcCCceEEEEcCCCCC--------CccCc----HhHHHhhcCCCCCcEEEEEcCchh-hhhcc-
Q 002044 250 PNLGELNSLLLRIDAFIARKKFLLILDDVWTD--------DYSKW----EPFRRCLINGHRESRILVTTRKET-VARMM- 315 (976)
Q Consensus 250 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--------~~~~~----~~l~~~l~~~~~gs~iivTtR~~~-v~~~~- 315 (976)
.+. ....+...+...-...+++|++|++..- +...- ..+...+.....+--||.||.... +...+
T Consensus 300 vGe-se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~all 378 (489)
T CHL00195 300 VGE-SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEIL 378 (489)
T ss_pred cCh-HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHh
Confidence 111 1111222222223357899999999421 00001 112222222333445666776543 22111
Q ss_pred ---CCcceEecCCCCHHHHHHHHHHHhcC
Q 002044 316 ---ESTDVIFIKELSEQECWALFKRFACF 341 (976)
Q Consensus 316 ---~~~~~~~l~~L~~~~~~~Lf~~~~~~ 341 (976)
.-...+.++.-+.++-.++|..+...
T Consensus 379 R~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 379 RKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred CCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 22457888888899999999877643
No 230
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.37 E-value=0.06 Score=61.73 Aligned_cols=197 Identities=13% Similarity=0.082 Sum_probs=111.6
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccc------hhcccccceeehH--------
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDED------VISNFEKRMWNCE-------- 239 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~------~~~~f~~~~wv~~-------- 239 (976)
..+-+|+.+..+|...+...-.. +.....+.|.|.+|.|||..+..|.+... -...|+ .+.+++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 34678999999998888654432 23455999999999999999999987421 112333 222222
Q ss_pred ---HHHHHHhCCCCCcccHHHHHHHHHHHHc-----CCceEEEEcCCCCCCccCcHhHHHhhcC-CCCCcEEEEEcCc--
Q 002044 240 ---SIIEALEGFAPNLGELNSLLLRIDAFIA-----RKKFLLILDDVWTDDYSKWEPFRRCLIN-GHRESRILVTTRK-- 308 (976)
Q Consensus 240 ---~~~~~l~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtR~-- 308 (976)
.|.+.+.+... ........+..+.. .+..++++|++..--...-+.+-..+.| ..++||++|-+=.
T Consensus 474 ~Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNT 550 (767)
T KOG1514|consen 474 IYEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANT 550 (767)
T ss_pred HHHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccc
Confidence 45555544321 22333334444443 4578889998821100011223333333 3577887665431
Q ss_pred hhhhhc-cC-------CcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHHhhhh
Q 002044 309 ETVARM-ME-------STDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTIGSLL 376 (976)
Q Consensus 309 ~~v~~~-~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 376 (976)
.+.... +. ....+..+|-++++-.+....+..+. ........+-+|++|+...|-.-.|+.+.-++.
T Consensus 551 mdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 551 MDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred ccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 111110 00 12467778888888888877766433 223445556667777777776666666554443
No 231
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.37 E-value=0.0024 Score=58.59 Aligned_cols=21 Identities=38% Similarity=0.474 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
||+|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999988
No 232
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.35 E-value=0.026 Score=61.43 Aligned_cols=172 Identities=10% Similarity=0.058 Sum_probs=98.8
Q ss_pred HHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccch---hcccccceeehHHHHHHHhCCCC--------
Q 002044 182 EKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDV---ISNFEKRMWNCESIIEALEGFAP-------- 250 (976)
Q Consensus 182 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~f~~~~wv~~~~~~~l~~~~~-------- 250 (976)
.-+++...+.. +.-...+.+.|+.|+||+|+|..++.-.-- ...-.|...-+...+.. +..+
T Consensus 10 ~~~~l~~~~~~-----~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~--g~HPD~~~i~p~ 82 (334)
T PRK07993 10 DYEQLVGSYQA-----GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQA--GTHPDYYTLTPE 82 (334)
T ss_pred HHHHHHHHHHc-----CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc--CCCCCEEEEecc
Confidence 34556666553 224568889999999999999887652100 00011111111111111 1100
Q ss_pred ---CcccHHHHHHHHHHHHc-----CCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCc-hhhhhc-cCCcce
Q 002044 251 ---NLGELNSLLLRIDAFIA-----RKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRK-ETVARM-MESTDV 320 (976)
Q Consensus 251 ---~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~-~~~~~~ 320 (976)
..-.+++. +.+.+.+. +++-++|+|++..-.......+...+..-..++.+|++|.+ ..+... ......
T Consensus 83 ~~~~~I~idqi-R~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~ 161 (334)
T PRK07993 83 KGKSSLGVDAV-REVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRL 161 (334)
T ss_pred cccccCCHHHH-HHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcccc
Confidence 11122222 22333332 55668999999665555666777777766667777777665 444433 234668
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHH
Q 002044 321 IFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAK 370 (976)
Q Consensus 321 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 370 (976)
+.+.+++.++..+.+.... . .. .+.+..++..++|.|....
T Consensus 162 ~~~~~~~~~~~~~~L~~~~---~--~~----~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 162 HYLAPPPEQYALTWLSREV---T--MS----QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccCCCCCHHHHHHHHHHcc---C--CC----HHHHHHHHHHcCCCHHHHH
Confidence 8999999999998886532 1 11 2235668999999996443
No 233
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.34 E-value=0.062 Score=65.91 Aligned_cols=178 Identities=17% Similarity=0.202 Sum_probs=94.8
Q ss_pred CCccccchhHHHHHHHHHhccccc-------CCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-HHHHH
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSSE-------QTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SIIEA 244 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~ 244 (976)
-.++.|.+..++++.+.+..+-.. +-...+-|.++|++|.|||++|+.+++. ....| +.+.. .++..
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f---i~v~~~~l~~~ 526 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF---IAVRGPEILSK 526 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEehHHHhhc
Confidence 356788888888887766422110 0123456889999999999999999984 33333 11211 22211
Q ss_pred HhCCCCCcccHHHHHHHH-HHHHcCCceEEEEcCCCCC------Cc-cC-----cHhHHHhhcC--CCCCcEEEEEcCch
Q 002044 245 LEGFAPNLGELNSLLLRI-DAFIARKKFLLILDDVWTD------DY-SK-----WEPFRRCLIN--GHRESRILVTTRKE 309 (976)
Q Consensus 245 l~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~~~------~~-~~-----~~~l~~~l~~--~~~gs~iivTtR~~ 309 (976)
. ..+.+.....+ ...-+..+.+|++|++..- +. .. ...+...+.. ...+--||.||...
T Consensus 527 ~------vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~ 600 (733)
T TIGR01243 527 W------VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRP 600 (733)
T ss_pred c------cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCCh
Confidence 1 11122223333 3333467899999998421 00 01 1122222322 12344566677654
Q ss_pred hhhhc-c----CCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCc
Q 002044 310 TVARM-M----ESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLP 366 (976)
Q Consensus 310 ~v~~~-~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 366 (976)
..... + .-...+.+...+.++-.++|+..... .......++.. +++.+.|.-
T Consensus 601 ~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~-~~~~~~~~l~~----la~~t~g~s 657 (733)
T TIGR01243 601 DILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS-MPLAEDVDLEE----LAEMTEGYT 657 (733)
T ss_pred hhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC-CCCCccCCHHH----HHHHcCCCC
Confidence 33221 1 12467888888888888898765422 11122223333 666676643
No 234
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.33 E-value=0.026 Score=55.44 Aligned_cols=111 Identities=17% Similarity=0.157 Sum_probs=59.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-HH--------HHHHh--CCCCC----------cccHHHHH
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SI--------IEALE--GFAPN----------LGELNSLL 259 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~--------~~~l~--~~~~~----------~~~~~~~~ 259 (976)
-.+++|+|..|.|||||.+.++.-. ....+.+++.. .+ ...+. ..... .+.-+...
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~r 104 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQR 104 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHH
Confidence 3589999999999999999998731 11222222211 00 00000 00000 11111222
Q ss_pred HHHHHHHcCCceEEEEcCCCCC-CccCcHhHHHhhcCCCCCcEEEEEcCchhhhhc
Q 002044 260 LRIDAFIARKKFLLILDDVWTD-DYSKWEPFRRCLINGHRESRILVTTRKETVARM 314 (976)
Q Consensus 260 ~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 314 (976)
-.+...+..++-++++|+-... |....+.+...+.....+..||++|.+......
T Consensus 105 l~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 105 IAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 3355666778889999997432 222333444444333335678888887766543
No 235
>PHA02244 ATPase-like protein
Probab=96.25 E-value=0.015 Score=62.74 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=19.1
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-|.|+|.+|+|||+||+.+++
T Consensus 121 PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999988
No 236
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.21 E-value=0.028 Score=65.55 Aligned_cols=44 Identities=32% Similarity=0.418 Sum_probs=35.6
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhc
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|.+..++.+...+... ...-|.|+|.+|+|||++|+.+++
T Consensus 65 ~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999998876532 234567899999999999999975
No 237
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.20 E-value=0.012 Score=61.89 Aligned_cols=73 Identities=19% Similarity=0.177 Sum_probs=35.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhC-CCCCcccHHH----HHHHHHHHHcCCceEEEEc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEG-FAPNLGELNS----LLLRIDAFIARKKFLLILD 276 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~-~~~~~~~~~~----~~~~l~~~l~~k~~LlVlD 276 (976)
+.|.|.|.+|+||||+|+++... ....=..+.+++.+.+. +.. ...+...... +...+.+.+ ++..++|+|
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~--~~~~~~~v~~i~~~~~~-~~~~~y~~~~~Ek~~R~~l~s~v~r~l-s~~~iVI~D 77 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY--LEEKGKEVVIISDDSLG-IDRNDYADSKKEKEARGSLKSAVERAL-SKDTIVILD 77 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH--HHHTT--EEEE-THHHH--TTSSS--GGGHHHHHHHHHHHHHHHH-TT-SEEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH--HHhcCCEEEEEcccccc-cchhhhhchhhhHHHHHHHHHHHHHhh-ccCeEEEEe
Confidence 47899999999999999999873 33221224445443333 222 1112222222 233344444 456899999
Q ss_pred CC
Q 002044 277 DV 278 (976)
Q Consensus 277 dv 278 (976)
|.
T Consensus 78 d~ 79 (270)
T PF08433_consen 78 DN 79 (270)
T ss_dssp S-
T ss_pred CC
Confidence 98
No 238
>PRK04132 replication factor C small subunit; Provisional
Probab=96.18 E-value=0.042 Score=66.40 Aligned_cols=146 Identities=12% Similarity=0.041 Sum_probs=87.1
Q ss_pred cCCchHHHHHHHHhcccchhccccc-ceeehHHHHHHHhCCCCCcccHHHHHHHHHHHHc-----C-CceEEEEcCCCCC
Q 002044 209 MGGIGKTTLAQFAYNDEDVISNFEK-RMWNCESIIEALEGFAPNLGELNSLLLRIDAFIA-----R-KKFLLILDDVWTD 281 (976)
Q Consensus 209 ~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~-----~-k~~LlVlDdv~~~ 281 (976)
+.++||||+|..++++. ....++. ++-+++ .+....+.....+.+..+ + +.-++|+|++..-
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNA----------Sd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~L 642 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNA----------SDERGINVIREKVKEFARTKPIGGASFKIIFLDEADAL 642 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeC----------CCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccC
Confidence 67899999999999842 1111211 121111 111123333333333221 1 3479999999766
Q ss_pred CccCcHhHHHhhcCCCCCcEEEEEcCch-hhhhcc-CCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHH
Q 002044 282 DYSKWEPFRRCLINGHRESRILVTTRKE-TVARMM-ESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIV 359 (976)
Q Consensus 282 ~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~ 359 (976)
.......+...+.......++|++|.+. .+.... .....+.+.+++.++-.+.+.+.+...+...+ .+....|+
T Consensus 643 t~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~----~e~L~~Ia 718 (846)
T PRK04132 643 TQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT----EEGLQAIL 718 (846)
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHH
Confidence 5566677777776545566777766653 333222 33678999999999998888776532221112 34566799
Q ss_pred hhcCCCchHH
Q 002044 360 GKCKGLPLAA 369 (976)
Q Consensus 360 ~~c~GlPLai 369 (976)
+.|+|.+-.+
T Consensus 719 ~~s~GDlR~A 728 (846)
T PRK04132 719 YIAEGDMRRA 728 (846)
T ss_pred HHcCCCHHHH
Confidence 9999988533
No 239
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.16 E-value=0.11 Score=57.13 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcc
Q 002044 180 VEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 180 ~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
+.-.+.+.+.+.... .....+|+|.|.-|+||||+.+.+.+.
T Consensus 2 ~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 2 KPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred hHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344566777776543 247889999999999999999998773
No 240
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.13 E-value=0.0055 Score=61.49 Aligned_cols=106 Identities=20% Similarity=0.228 Sum_probs=66.3
Q ss_pred ccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecCccccccCccc
Q 002044 547 IFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKLYLVEKLPETC 626 (976)
Q Consensus 547 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L~~~~~lp~~i 626 (976)
+.-+..+..+++++|.+....... +...+.+-++|++-+++... ++..-.++|++ +.-|-+.+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~-l~~~ia~~~~L~vvnfsd~f--tgr~kde~~~~--------------L~~Ll~aL 88 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEE-LCNVIANVRNLRVVNFSDAF--TGRDKDELYSN--------------LVMLLKAL 88 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHH-HHHHHhhhcceeEeehhhhh--hcccHHHHHHH--------------HHHHHHHH
Confidence 344677888889998876544433 44556777888888877321 01111222221 12223456
Q ss_pred cccCCccEEecCCCCCCcccch----hhcccCCCcEEEecccccccC
Q 002044 627 CELLNLQTLNMCGSPGLKRLPQ----GIGKLINLRHLMFEVDYLEYM 669 (976)
Q Consensus 627 ~~L~~L~~L~l~~~~~l~~lp~----~i~~l~~L~~L~l~~~~l~~l 669 (976)
-++++||+.+|+.|..-...|+ .|++-+.|.||.+++|.+..+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~ 135 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPI 135 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCcc
Confidence 6889999999999873344444 367788999999988776543
No 241
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.13 E-value=0.0041 Score=70.32 Aligned_cols=50 Identities=26% Similarity=0.241 Sum_probs=41.0
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhc
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|.++.+++|++.|......-...-+++.++|++|+||||||+.+++
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 36899999999999999443322234567999999999999999999987
No 242
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.13 E-value=0.032 Score=55.17 Aligned_cols=110 Identities=16% Similarity=0.148 Sum_probs=59.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH----HHHHHHhC------C-------------CCCcccHHH
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE----SIIEALEG------F-------------APNLGELNS 257 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~----~~~~~l~~------~-------------~~~~~~~~~ 257 (976)
-.+++|.|..|.|||||++.++.-.. .....+++.. .....+.. . ......-+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~ 104 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGER 104 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHH
Confidence 35899999999999999999987321 1112222211 00000000 0 001111122
Q ss_pred HHHHHHHHHcCCceEEEEcCCCCC-CccCcHhHHHhhcCCCCCcEEEEEcCchhhhh
Q 002044 258 LLLRIDAFIARKKFLLILDDVWTD-DYSKWEPFRRCLINGHRESRILVTTRKETVAR 313 (976)
Q Consensus 258 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 313 (976)
..-.+...+-.++-++++|+.... |....+.+...+.....+..||++|.+.....
T Consensus 105 qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 105 QRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 233355666778889999998532 22223334344433234667888888876654
No 243
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.13 E-value=0.0066 Score=58.50 Aligned_cols=123 Identities=18% Similarity=0.277 Sum_probs=78.4
Q ss_pred ceEEEeecCCCCCCccccc-ccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceEeCccccCCCcCcccccccC
Q 002044 776 ESLQITGFKGRTLMLSWIV-SLNKLKKLRLLFCDKCEVMPALGILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIHIQDG 854 (976)
Q Consensus 776 ~~L~L~~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~l~~~ 854 (976)
..+++.++++... .-++ -+.+...++|++|. +..++.+..++.|..|.|.+|. +..+...+.
T Consensus 22 ~e~~LR~lkip~i--enlg~~~d~~d~iDLtdNd-l~~l~~lp~l~rL~tLll~nNr-It~I~p~L~------------- 84 (233)
T KOG1644|consen 22 RELDLRGLKIPVI--ENLGATLDQFDAIDLTDND-LRKLDNLPHLPRLHTLLLNNNR-ITRIDPDLD------------- 84 (233)
T ss_pred cccccccccccch--hhccccccccceecccccc-hhhcccCCCccccceEEecCCc-ceeeccchh-------------
Confidence 3445555544332 1122 34567778888874 4556667788999999998776 666665432
Q ss_pred CCCCCCCCccCccCCccceeeecccccccccc-cCCCccccCCCcceEeeecCCCCCCCC----cCCCCCCCCCeEEEcc
Q 002044 855 SMSSSSSSSANIAFPKLKELKFFCLDEWEEWD-FGKEDITIMPQLSSMKISYCSKLNSLP----DQLLQSTTLEELEIIR 929 (976)
Q Consensus 855 ~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~-~~~~~~~~l~~L~~L~l~~c~~L~~lp----~~l~~l~~L~~L~l~~ 929 (976)
..+|+|+.|.+.+ .++..+. ..+ ...+|.|+.|.+-++| ....+ ..+..+|+|+.|+..+
T Consensus 85 -----------~~~p~l~~L~Ltn-Nsi~~l~dl~p--La~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 85 -----------TFLPNLKTLILTN-NSIQELGDLDP--LASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred -----------hhccccceEEecC-cchhhhhhcch--hccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhh
Confidence 2588899988877 2233332 222 4578999999999888 33333 2345678899998876
Q ss_pred C
Q 002044 930 C 930 (976)
Q Consensus 930 c 930 (976)
-
T Consensus 150 V 150 (233)
T KOG1644|consen 150 V 150 (233)
T ss_pred h
Confidence 4
No 244
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.13 E-value=0.012 Score=61.22 Aligned_cols=76 Identities=18% Similarity=0.190 Sum_probs=47.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeeh-H--------HHHHHHhCCC-----------CCcccHH----
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNC-E--------SIIEALEGFA-----------PNLGELN---- 256 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~--------~~~~~l~~~~-----------~~~~~~~---- 256 (976)
-+-++|.|.+|+|||||++.+++ .++.+|+..+++. + .+.+.+.+.. .+.....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 34679999999999999999999 5665665544432 2 4444443321 1111111
Q ss_pred -HHHHHHHHHH--c-CCceEEEEcCC
Q 002044 257 -SLLLRIDAFI--A-RKKFLLILDDV 278 (976)
Q Consensus 257 -~~~~~l~~~l--~-~k~~LlVlDdv 278 (976)
...-.+.+++ + ++.+|+++||+
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1223355555 3 88999999999
No 245
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.13 E-value=0.00053 Score=64.83 Aligned_cols=20 Identities=50% Similarity=0.536 Sum_probs=18.8
Q ss_pred EEEEecCCchHHHHHHHHhc
Q 002044 204 ISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 204 v~I~G~gGiGKTtLa~~v~~ 223 (976)
|.++|.+|+|||+||+.+++
T Consensus 2 vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999987
No 246
>PRK13695 putative NTPase; Provisional
Probab=96.10 E-value=0.016 Score=57.02 Aligned_cols=22 Identities=36% Similarity=0.385 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 002044 203 IISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
.|+|.|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998874
No 247
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.10 E-value=0.049 Score=54.52 Aligned_cols=157 Identities=16% Similarity=0.127 Sum_probs=86.2
Q ss_pred CCccccchhHH---HHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCC
Q 002044 173 LSEVRGRVEEK---NALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFA 249 (976)
Q Consensus 173 ~~~~~Gr~~~~---~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~ 249 (976)
-.+++|.++.. .-|++.|..++.=++=..+-|..+|++|.|||.+|+++++...+ -++.+...+-++..
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv-------p~l~vkat~liGeh- 191 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV-------PLLLVKATELIGEH- 191 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC-------ceEEechHHHHHHH-
Confidence 35789987765 34566776554222235688999999999999999999995332 22222212222211
Q ss_pred CCcccHHHHHHHHHHHH-cCCceEEEEcCCCCCC--------ccCcHh----HHHhhcC--CCCCcEEEEEcCchhhhhc
Q 002044 250 PNLGELNSLLLRIDAFI-ARKKFLLILDDVWTDD--------YSKWEP----FRRCLIN--GHRESRILVTTRKETVARM 314 (976)
Q Consensus 250 ~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~--------~~~~~~----l~~~l~~--~~~gs~iivTtR~~~v~~~ 314 (976)
..+-...+..+.+.- +.-++.+++|.+.-.. ..+... +..-+.. .+.|...|-.|....+...
T Consensus 192 --VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~ 269 (368)
T COG1223 192 --VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDP 269 (368)
T ss_pred --hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCH
Confidence 111122222333222 3468999999883210 011112 2222221 2456666666665554432
Q ss_pred c-CC--cceEecCCCCHHHHHHHHHHHh
Q 002044 315 M-ES--TDVIFIKELSEQECWALFKRFA 339 (976)
Q Consensus 315 ~-~~--~~~~~l~~L~~~~~~~Lf~~~~ 339 (976)
. .. ...++...-+++|-.+++...+
T Consensus 270 aiRsRFEeEIEF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 270 AIRSRFEEEIEFKLPNDEERLEILEYYA 297 (368)
T ss_pred HHHhhhhheeeeeCCChHHHHHHHHHHH
Confidence 1 11 3456666667888888888776
No 248
>PRK06696 uridine kinase; Validated
Probab=96.03 E-value=0.0075 Score=62.07 Aligned_cols=43 Identities=21% Similarity=0.217 Sum_probs=34.4
Q ss_pred cchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhc
Q 002044 178 GRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 178 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.|.+-+++|.+.+.... .....+|+|.|.+|+||||+|+.+..
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 35667777877776433 34678999999999999999999987
No 249
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.02 E-value=0.022 Score=54.03 Aligned_cols=21 Identities=43% Similarity=0.513 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999985
No 250
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.02 E-value=0.09 Score=56.20 Aligned_cols=41 Identities=15% Similarity=0.076 Sum_probs=29.6
Q ss_pred ccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhc
Q 002044 175 EVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.++=..+....+...+.. .+-|.|.|.+|+||||+|+.++.
T Consensus 46 ~y~f~~~~~~~vl~~l~~--------~~~ilL~G~pGtGKTtla~~lA~ 86 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAY--------DRRVMVQGYHGTGKSTHIEQIAA 86 (327)
T ss_pred CccCCHHHHHHHHHHHhc--------CCcEEEEeCCCChHHHHHHHHHH
Confidence 344344455566666652 23589999999999999999987
No 251
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.02 E-value=0.034 Score=57.98 Aligned_cols=164 Identities=18% Similarity=0.187 Sum_probs=90.1
Q ss_pred CCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcc-cchhcccccceeehH----------HH
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYND-EDVISNFEKRMWNCE----------SI 241 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~-~~~~~~f~~~~wv~~----------~~ 241 (976)
...++|-.++..++..++....- .+...-|.|+|+.|.|||+|...+..| .++.++|-.+ -.+. .|
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v-~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLV-RLNGELQTDKIALKGI 99 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEE-EECccchhhHHHHHHH
Confidence 34688988888888888864432 223446789999999999999887775 1233333211 1111 22
Q ss_pred HHHHh----CCCCCcccHHHHHHHHHHHHcC------CceEEEEcCCCCCCccCcHhHHHhhc-----CCCCCcEEEEEc
Q 002044 242 IEALE----GFAPNLGELNSLLLRIDAFIAR------KKFLLILDDVWTDDYSKWEPFRRCLI-----NGHRESRILVTT 306 (976)
Q Consensus 242 ~~~l~----~~~~~~~~~~~~~~~l~~~l~~------k~~LlVlDdv~~~~~~~~~~l~~~l~-----~~~~gs~iivTt 306 (976)
..++. .......+..+....+-+.|+. -++++|+|.++-.-...=..+.-.+. ...+-+-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 22222 1111122333334445555542 36888888873221111111221111 235667888999
Q ss_pred Cchh-------hhhccCCcceEecCCCCHHHHHHHHHHHh
Q 002044 307 RKET-------VARMMESTDVIFIKELSEQECWALFKRFA 339 (976)
Q Consensus 307 R~~~-------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 339 (976)
|-.- |-..+....++-+++++-++...++++..
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 9532 22222223356677788888888887765
No 252
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.01 E-value=0.044 Score=53.42 Aligned_cols=111 Identities=13% Similarity=0.097 Sum_probs=60.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccch-hc--ccc---cceeeh-------HHHHHHHhC-CCCCcccHHHHHHHHHHHH
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDV-IS--NFE---KRMWNC-------ESIIEALEG-FAPNLGELNSLLLRIDAFI 266 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~--~f~---~~~wv~-------~~~~~~l~~-~~~~~~~~~~~~~~l~~~l 266 (976)
-.+++|+|..|.|||||++.+..-... .+ .++ .+.++. ..+.+.+.. .....+.-+...-.+...+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~laral 106 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARLL 106 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHHH
Confidence 358999999999999999999874211 11 011 111211 123333321 1122223333344456667
Q ss_pred cCCceEEEEcCCCCC-CccCcHhHHHhhcCCCCCcEEEEEcCchhhhh
Q 002044 267 ARKKFLLILDDVWTD-DYSKWEPFRRCLINGHRESRILVTTRKETVAR 313 (976)
Q Consensus 267 ~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 313 (976)
-.++-++++|+--.. |....+.+...+... +..||++|.+.....
T Consensus 107 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 107 LHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 778888999987431 222333344444332 356888888766543
No 253
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.97 E-value=0.019 Score=55.74 Aligned_cols=109 Identities=17% Similarity=0.118 Sum_probs=60.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-H-----HHHHHhCC---CCCcccHHHHHHHHHHHHcCCce
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-S-----IIEALEGF---APNLGELNSLLLRIDAFIARKKF 271 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~-----~~~~l~~~---~~~~~~~~~~~~~l~~~l~~k~~ 271 (976)
-.+++|+|..|.|||||.+.++... ......+++.. . ..+..... ..+.+.-+...-.+...+-.++-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 3589999999999999999998732 12233333322 0 00111110 01122223333445666777888
Q ss_pred EEEEcCCCCC-CccCcHhHHHhhcCC-CCCcEEEEEcCchhhh
Q 002044 272 LLILDDVWTD-DYSKWEPFRRCLING-HRESRILVTTRKETVA 312 (976)
Q Consensus 272 LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~ 312 (976)
++++|+.-.. |....+.+...+... ..|..||++|.+....
T Consensus 103 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 9999998431 223333444444332 2366788888876533
No 254
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.038 Score=66.31 Aligned_cols=120 Identities=15% Similarity=0.154 Sum_probs=74.7
Q ss_pred CccccchhHHHHHHHHHhcccccCCC--CeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhC---C
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTN--AVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEG---F 248 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~--~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~---~ 248 (976)
..++|.++.+..|.+.+.....+-.. ..-...+.|+.|+|||.||++++. .+-+..+..+-++.+-..+..+ .
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse~~evskligs 639 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSEFQEVSKLIGS 639 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhhhhhhhhccCC
Confidence 35788888888888888755422122 466778999999999999999987 4433334444444322222222 1
Q ss_pred CCCcccHHHHHHHHHHHHcCCce-EEEEcCCCCCCccCcHhHHHhhcCC
Q 002044 249 APNLGELNSLLLRIDAFIARKKF-LLILDDVWTDDYSKWEPFRRCLING 296 (976)
Q Consensus 249 ~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~ 296 (976)
.+.. --.+....+.+.+++++| +|+||||...++.....+...+..+
T Consensus 640 p~gy-vG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 640 PPGY-VGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred Cccc-ccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 1111 112234467788888876 7779999776666555555655543
No 255
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.93 E-value=0.042 Score=60.60 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=19.9
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|+.|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 4899999999999999999854
No 256
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.93 E-value=0.03 Score=55.06 Aligned_cols=110 Identities=14% Similarity=0.133 Sum_probs=58.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH---------HHHHHHh--CCCCC----------cccHHHHH
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE---------SIIEALE--GFAPN----------LGELNSLL 259 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---------~~~~~l~--~~~~~----------~~~~~~~~ 259 (976)
-.+++|+|..|.|||||.+.++.-. ......+++.. .....+. ..... .+.-+...
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qr 104 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQR 104 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHH
Confidence 3589999999999999999998631 11122222211 0000000 00000 11112233
Q ss_pred HHHHHHHcCCceEEEEcCCCCC-CccCcHhHHHhhcC-CCCCcEEEEEcCchhhhh
Q 002044 260 LRIDAFIARKKFLLILDDVWTD-DYSKWEPFRRCLIN-GHRESRILVTTRKETVAR 313 (976)
Q Consensus 260 ~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtR~~~v~~ 313 (976)
-.+...+..++-++++|+.... |......+...+.. ...|..||++|.+.....
T Consensus 105 v~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 105 LGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 3455666777889999998431 22223333333332 123667888888776654
No 257
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.87 E-value=0.015 Score=58.42 Aligned_cols=105 Identities=12% Similarity=0.104 Sum_probs=57.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCC------CC-cccHHHHHHHHHHHHcCCceEEE
Q 002044 202 QIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFA------PN-LGELNSLLLRIDAFIARKKFLLI 274 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~------~~-~~~~~~~~~~l~~~l~~k~~LlV 274 (976)
.+|.|+|..|.||||++..+.. .........++...+..+...... .. ..+.......++..+...+=.++
T Consensus 2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii 79 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVIL 79 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEE
Confidence 3789999999999999998776 233233333333221111111000 00 01122345567777777788999
Q ss_pred EcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCchhhhh
Q 002044 275 LDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKETVAR 313 (976)
Q Consensus 275 lDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 313 (976)
+|++.+ .+.+....... ..|-.++.|+...++..
T Consensus 80 ~gEird--~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 80 VGEMRD--LETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred EcCCCC--HHHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 999943 33333333322 23455777777655443
No 258
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.87 E-value=0.016 Score=57.86 Aligned_cols=37 Identities=27% Similarity=0.225 Sum_probs=25.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE 239 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 239 (976)
++||.++|+.|+||||.+-+++.. ...+-..+..++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~ 37 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISA 37 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHH--HhhccccceeecC
Confidence 369999999999999999888763 3333333445543
No 259
>PRK06762 hypothetical protein; Provisional
Probab=95.87 E-value=0.091 Score=51.23 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999987
No 260
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.84 E-value=0.0079 Score=56.64 Aligned_cols=108 Identities=14% Similarity=0.074 Sum_probs=60.8
Q ss_pred ccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccch-hcccccceeehHHHHHHHhCCCCCcccH
Q 002044 177 RGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDV-ISNFEKRMWNCESIIEALEGFAPNLGEL 255 (976)
Q Consensus 177 ~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~l~~~~~~~~~~ 255 (976)
||.-..++++.+.+..-.. ...-|.|.|..|+||+++|+.++..... ...|..+-. . ...
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~--~------------~~~- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDC--A------------SLP- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCH--H------------CTC-
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEech--h------------hCc-
Confidence 4666667777776654332 2345689999999999999998874221 112211110 0 001
Q ss_pred HHHHHHHHHHHcCCceEEEEcCCCCCCccCcHhHHHhhcCC-CCCcEEEEEcCch
Q 002044 256 NSLLLRIDAFIARKKFLLILDDVWTDDYSKWEPFRRCLING-HRESRILVTTRKE 309 (976)
Q Consensus 256 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtR~~ 309 (976)
.+.+.+ .+.--|+++|+..-+......+...+... ....|+|.||+..
T Consensus 62 ---~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 62 ---AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp ---HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred ---HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 111111 26667889999654444455566666543 5667999999853
No 261
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.82 E-value=0.028 Score=55.69 Aligned_cols=109 Identities=16% Similarity=0.104 Sum_probs=59.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeeh---------------H----HHHHHHh------CCCCCcccH
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNC---------------E----SIIEALE------GFAPNLGEL 255 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~---------------~----~~~~~l~------~~~~~~~~~ 255 (976)
-.+++|+|..|.|||||++.++.... .....+++. + ..++.+. ......+.-
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 35899999999999999999987321 111111110 0 1111111 111112222
Q ss_pred HHHHHHHHHHHcCCceEEEEcCCCC-CCccCcHhHHHhhcCC-CC-CcEEEEEcCchhhh
Q 002044 256 NSLLLRIDAFIARKKFLLILDDVWT-DDYSKWEPFRRCLING-HR-ESRILVTTRKETVA 312 (976)
Q Consensus 256 ~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~iivTtR~~~v~ 312 (976)
....-.+...+...+-++++|+.-. -|....+.+...+..- .. |..||++|.+....
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 3333446666777889999998843 1223334444444332 22 56788888876544
No 262
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.81 E-value=0.049 Score=59.12 Aligned_cols=70 Identities=9% Similarity=0.102 Sum_probs=45.3
Q ss_pred CceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCchh-hhhcc-CCcceEecCCCCHHHHHHHHHHH
Q 002044 269 KKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKET-VARMM-ESTDVIFIKELSEQECWALFKRF 338 (976)
Q Consensus 269 k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~ 338 (976)
++-++|+|++..-+...-..+...+.....+..+|++|.+.. +...+ .....+.+.+++.++..+.+...
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 344556688865555555556666655445566777777643 44332 33578999999999998888653
No 263
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.15 Score=57.41 Aligned_cols=98 Identities=17% Similarity=0.160 Sum_probs=60.8
Q ss_pred CCccccchhHHHHHHHHHhcccc------cCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHh
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSS------EQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALE 246 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~ 246 (976)
-.++=|.+..+.++.+++..-.. .+-...+=|.+||++|.|||.||++++++ ..-.| +.+..-+.+.
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge--l~vPf-----~~isApeivS 261 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE--LGVPF-----LSISAPEIVS 261 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh--cCCce-----Eeecchhhhc
Confidence 45677899888888877653111 11345678899999999999999999994 32222 2221122222
Q ss_pred CCCCCcccHHHHHHHHHHHHcCCceEEEEcCCC
Q 002044 247 GFAPNLGELNSLLLRIDAFIARKKFLLILDDVW 279 (976)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 279 (976)
+... ...+.+.+.+.+.-..-++++++|++.
T Consensus 262 GvSG--ESEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 262 GVSG--ESEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred ccCc--ccHHHHHHHHHHHhccCCeEEEeeccc
Confidence 2111 122333444455556789999999994
No 264
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.76 E-value=0.044 Score=53.88 Aligned_cols=110 Identities=23% Similarity=0.166 Sum_probs=59.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-HH---HHHHhC------CC----CC--------cccHHHH
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SI---IEALEG------FA----PN--------LGELNSL 258 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~---~~~l~~------~~----~~--------~~~~~~~ 258 (976)
-.+++|+|..|.|||||++.++.... .....+++.. .+ ...... .. .. ...-+..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~q 102 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQ 102 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHH
Confidence 35899999999999999999987321 1122222211 00 000000 00 00 1111222
Q ss_pred HHHHHHHHcCCceEEEEcCCCCC-CccCcHhHHHhhcCC-CCCcEEEEEcCchhhhh
Q 002044 259 LLRIDAFIARKKFLLILDDVWTD-DYSKWEPFRRCLING-HRESRILVTTRKETVAR 313 (976)
Q Consensus 259 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~ 313 (976)
.-.+...+..++-++++|+.-.. |....+.+...+... ..|..||++|.+.....
T Consensus 103 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 33466677788899999998432 222233343433321 23667889988876554
No 265
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.75 E-value=0.044 Score=51.94 Aligned_cols=104 Identities=19% Similarity=0.241 Sum_probs=58.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCCC
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDDVWT 280 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 280 (976)
-.+++|+|..|.|||||++.+..... .....+|+... ..+ ......+.-....-.+...+..++-++++|+.-.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~--~~i-~~~~~lS~G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGST--VKI-GYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCe--EEE-EEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 35899999999999999999987321 12233333210 000 0000122223333445666777888999998743
Q ss_pred -CCccCcHhHHHhhcCCCCCcEEEEEcCchhhh
Q 002044 281 -DDYSKWEPFRRCLINGHRESRILVTTRKETVA 312 (976)
Q Consensus 281 -~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 312 (976)
-|....+.+...+... +..||++|.+....
T Consensus 100 ~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 100 HLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred CCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 2333344454444433 24678888776544
No 266
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.73 E-value=0.024 Score=65.04 Aligned_cols=80 Identities=18% Similarity=0.221 Sum_probs=47.1
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCCCcccHHHHHHHHHHHHc--------CCc
Q 002044 199 NAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAPNLGELNSLLLRIDAFIA--------RKK 270 (976)
Q Consensus 199 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~--------~k~ 270 (976)
..-+|..++|++|+||||||+.|++. ..|. ++=++ ..+.........+|...++ +++
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkq----aGYs-VvEIN----------ASDeRt~~~v~~kI~~avq~~s~l~adsrP 388 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQ----AGYS-VVEIN----------ASDERTAPMVKEKIENAVQNHSVLDADSRP 388 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHh----cCce-EEEec----------ccccccHHHHHHHHHHHHhhccccccCCCc
Confidence 45689999999999999999999983 2332 22121 1222233333344444433 456
Q ss_pred eEEEEcCCCCCCccCcHhHHHhh
Q 002044 271 FLLILDDVWTDDYSKWEPFRRCL 293 (976)
Q Consensus 271 ~LlVlDdv~~~~~~~~~~l~~~l 293 (976)
.-||+|.+........+.+...+
T Consensus 389 ~CLViDEIDGa~~~~Vdvilslv 411 (877)
T KOG1969|consen 389 VCLVIDEIDGAPRAAVDVILSLV 411 (877)
T ss_pred ceEEEecccCCcHHHHHHHHHHH
Confidence 66999999544322344444443
No 267
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.078 Score=60.68 Aligned_cols=159 Identities=14% Similarity=0.058 Sum_probs=84.1
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCCCcccHHHHHH----HHHHHHcCCceEEEE
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAPNLGELNSLLL----RIDAFIARKKFLLIL 275 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~~~~~~~~~~~----~l~~~l~~k~~LlVl 275 (976)
...-|.|.|..|+|||+||+++++... +.+.-.+.+|+++.+ +....+..+. .+.+.+.-.+-+|||
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l--------~~~~~e~iQk~l~~vfse~~~~~PSiIvL 500 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTL--------DGSSLEKIQKFLNNVFSEALWYAPSIIVL 500 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhc--------cchhHHHHHHHHHHHHHHHHhhCCcEEEE
Confidence 345788999999999999999998432 333334455554221 1122333333 344556678999999
Q ss_pred cCCCC------CCccCcHh----HHHhhcC-----CCCCcE--EEEEcCchhhh-hcc----CCcceEecCCCCHHHHHH
Q 002044 276 DDVWT------DDYSKWEP----FRRCLIN-----GHRESR--ILVTTRKETVA-RMM----ESTDVIFIKELSEQECWA 333 (976)
Q Consensus 276 Ddv~~------~~~~~~~~----l~~~l~~-----~~~gs~--iivTtR~~~v~-~~~----~~~~~~~l~~L~~~~~~~ 333 (976)
||+.- .+..+|.. +...+.+ ...+.+ +|.|.....-. ... -...+..+..+...+-.+
T Consensus 501 Ddld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~ 580 (952)
T KOG0735|consen 501 DDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKE 580 (952)
T ss_pred cchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHH
Confidence 99932 11233322 2222211 233444 34444332211 111 113467889999888888
Q ss_pred HHHHHhcCCCCCCcchhHHHHHHHHHhhcCC-CchHHHH
Q 002044 334 LFKRFACFGRSLSECEQLEEIGKKIVGKCKG-LPLAAKT 371 (976)
Q Consensus 334 Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~ 371 (976)
+++........ ....+...-++.+|+| .|.-+++
T Consensus 581 IL~~~~s~~~~----~~~~~dLd~ls~~TEGy~~~DL~i 615 (952)
T KOG0735|consen 581 ILTTIFSKNLS----DITMDDLDFLSVKTEGYLATDLVI 615 (952)
T ss_pred HHHHHHHhhhh----hhhhHHHHHHHHhcCCccchhHHH
Confidence 88765421111 1112222227777776 3444433
No 268
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.72 E-value=0.034 Score=55.75 Aligned_cols=105 Identities=19% Similarity=0.160 Sum_probs=48.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH--HHHHHHhCC-CCCcccHHHHHHHHHHH-H-----cCCce
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE--SIIEALEGF-APNLGELNSLLLRIDAF-I-----ARKKF 271 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~l~~~-~~~~~~~~~~~~~l~~~-l-----~~k~~ 271 (976)
-+++.|.|.+|.||||+++.+... ....=..++++.- .....+... ......+.......... . ..++-
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~--~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~ 95 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEA--LEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKD 95 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHH--HHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTS
T ss_pred CeEEEEEECCCCCHHHHHHHHHHH--HHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCccc
Confidence 357889999999999999988762 3222122232221 111111110 01111111000000000 0 12345
Q ss_pred EEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCch
Q 002044 272 LLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKE 309 (976)
Q Consensus 272 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 309 (976)
+||+|++.--+...+..+....+. .|+|+|+.-=..
T Consensus 96 vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 96 VLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp EEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred EEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 999999965555556666555443 467888765433
No 269
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.69 E-value=0.046 Score=55.07 Aligned_cols=61 Identities=13% Similarity=0.121 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHcCCceEEEEcCCCC-CCccCcHhHHHhhcCC--CCCcEEEEEcCchhhhhccC
Q 002044 256 NSLLLRIDAFIARKKFLLILDDVWT-DDYSKWEPFRRCLING--HRESRILVTTRKETVARMME 316 (976)
Q Consensus 256 ~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~iivTtR~~~v~~~~~ 316 (976)
++..-.+.+.|-..+-+|+.|+--. -|...-+.+...+... ..|.-||+.|.+..+|..+.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 3444557777888889999997521 1223334444444432 44778999999999998643
No 270
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.69 E-value=0.039 Score=56.50 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|+.|.|||||.+.+..
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999976
No 271
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.64 E-value=0.026 Score=58.28 Aligned_cols=38 Identities=21% Similarity=0.166 Sum_probs=29.4
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE 239 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 239 (976)
.-.++.|+|.+|+|||++|.+++.. ....-..++|++.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~ 59 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDT 59 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEC
Confidence 4579999999999999999998873 3333456777765
No 272
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.63 E-value=0.026 Score=54.74 Aligned_cols=35 Identities=29% Similarity=0.237 Sum_probs=25.2
Q ss_pred EEEEEecCCchHHHHHHHHhcccchhcccccceeehH
Q 002044 203 IISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE 239 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 239 (976)
++.|+|.+|+||||++..+... ....-..++|+..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~ 35 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDI 35 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEEC
Confidence 4689999999999999999873 3323334556554
No 273
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.62 E-value=0.08 Score=57.65 Aligned_cols=24 Identities=42% Similarity=0.457 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..++|+++|.+|+||||++..++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 458999999999999999999986
No 274
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.60 E-value=0.033 Score=57.86 Aligned_cols=78 Identities=24% Similarity=0.233 Sum_probs=47.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-----HHHHHHhCCCC-----------------------C
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-----SIIEALEGFAP-----------------------N 251 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-----~~~~~l~~~~~-----------------------~ 251 (976)
.-.++.|+|.+|+|||++|.++... ...+=..++|++. ++++.+..... .
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~--~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~ 101 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYG--ALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWN 101 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH--HHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccC
Confidence 4579999999999999999998652 1122335666665 33332221110 0
Q ss_pred cccHHHHHHHHHHHHcC-CceEEEEcCCC
Q 002044 252 LGELNSLLLRIDAFIAR-KKFLLILDDVW 279 (976)
Q Consensus 252 ~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 279 (976)
....+.....+.+.+.. +.-++|+|.+-
T Consensus 102 ~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 102 STLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 12234566666666654 55689999984
No 275
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.55 E-value=0.0094 Score=55.30 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.--|+|.|++|+||||+++.+.+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHH
Confidence 34579999999999999999997
No 276
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.16 Score=59.46 Aligned_cols=157 Identities=16% Similarity=0.110 Sum_probs=86.7
Q ss_pred CccccchhHHHHHHHHHhccccc-------CCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHh
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSE-------QTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALE 246 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~ 246 (976)
.++.|.+...+.+.+.+..+-.. +-...+.+-++|++|.|||.||+++++ ....+|-.+.+- .+.
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~v~~~------~l~ 313 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFISVKGS------ELL 313 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEEeeCH------HHh
Confidence 34566666555555444322110 124566899999999999999999999 444455433321 111
Q ss_pred CCCCCcccHHH-HHHHHHHHHcCCceEEEEcCCCC-----CCc------cCcHhHHHhhcC--CCCCcEEEEEcCchhhh
Q 002044 247 GFAPNLGELNS-LLLRIDAFIARKKFLLILDDVWT-----DDY------SKWEPFRRCLIN--GHRESRILVTTRKETVA 312 (976)
Q Consensus 247 ~~~~~~~~~~~-~~~~l~~~l~~k~~LlVlDdv~~-----~~~------~~~~~l~~~l~~--~~~gs~iivTtR~~~v~ 312 (976)
... ..+.+. ....+....+..+..|++|.+.. .+. .....+...+.. ...+..||-||......
T Consensus 314 sk~--vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~l 391 (494)
T COG0464 314 SKW--VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDL 391 (494)
T ss_pred ccc--cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCcccc
Confidence 111 112222 23333444457899999999943 111 112223333322 22333455555543332
Q ss_pred hc-c----CCcceEecCCCCHHHHHHHHHHHhc
Q 002044 313 RM-M----ESTDVIFIKELSEQECWALFKRFAC 340 (976)
Q Consensus 313 ~~-~----~~~~~~~l~~L~~~~~~~Lf~~~~~ 340 (976)
.. + .-...+.+.+-+.++..+.|+.+.-
T Consensus 392 d~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 392 DPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred CHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 21 1 2256888999999999999998873
No 277
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.025 Score=62.31 Aligned_cols=54 Identities=28% Similarity=0.263 Sum_probs=39.2
Q ss_pred Cccccchh---HHHHHHHHHhcccc---cCCCCeEEEEEEecCCchHHHHHHHHhcccch
Q 002044 174 SEVRGRVE---EKNALKSKLLCKSS---EQTNAVQIISLVGMGGIGKTTLAQFAYNDEDV 227 (976)
Q Consensus 174 ~~~~Gr~~---~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 227 (976)
.++-|-|+ |+++|++.|.++.. -+..=++=|.++|++|.|||-||++|+.+..+
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 45667665 56777888876531 11233567899999999999999999986544
No 278
>PRK00625 shikimate kinase; Provisional
Probab=95.50 E-value=0.1 Score=50.89 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.|.++||+|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 279
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.42 E-value=0.018 Score=56.37 Aligned_cols=109 Identities=17% Similarity=0.056 Sum_probs=57.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCCC
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDDVWT 280 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 280 (976)
-.+++|+|..|.|||||++.+..-.. .....+++...-+. ........+.-+...-.+...+..++-++++|+--.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~-~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPV-YKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEE-EEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 35899999999999999999986311 11222222110000 000011122233344446667777888999998743
Q ss_pred C-CccCcHhHHHhhcCC-CC-CcEEEEEcCchhhhh
Q 002044 281 D-DYSKWEPFRRCLING-HR-ESRILVTTRKETVAR 313 (976)
Q Consensus 281 ~-~~~~~~~l~~~l~~~-~~-gs~iivTtR~~~v~~ 313 (976)
. |....+.+...+... .. +..||++|.+.....
T Consensus 101 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 101 YLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 2 222223333333221 12 256777777765443
No 280
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.19 Score=57.53 Aligned_cols=159 Identities=14% Similarity=0.129 Sum_probs=82.9
Q ss_pred ccCCccccchhHHHHHHHHHhccccc-------CCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-HHH
Q 002044 171 IDLSEVRGRVEEKNALKSKLLCKSSE-------QTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SII 242 (976)
Q Consensus 171 ~~~~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~ 242 (976)
+..+++=|.++-+.+|.+.+..+-.+ +-...+-|..+|++|.|||++|+.+++ .....|-.+ .. +++
T Consensus 431 v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nFlsv---kgpEL~ 505 (693)
T KOG0730|consen 431 VSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNFLSV---KGPELF 505 (693)
T ss_pred CChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCeeec---cCHHHH
Confidence 44455667777777777666544322 124678899999999999999999999 444444221 00 111
Q ss_pred HHHhCCCCCcccHHHHH-HHHHHHHcCCceEEEEcCCCCCC-------ccCcHhHHHhh----cCCCCCcEE--EEEcCc
Q 002044 243 EALEGFAPNLGELNSLL-LRIDAFIARKKFLLILDDVWTDD-------YSKWEPFRRCL----INGHRESRI--LVTTRK 308 (976)
Q Consensus 243 ~~l~~~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~~~-------~~~~~~l~~~l----~~~~~gs~i--ivTtR~ 308 (976)
...-+ +.+..+ +.+++.-+--+.+|+||.+..-. ...-+.+...+ ........| |-.|..
T Consensus 506 sk~vG------eSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNR 579 (693)
T KOG0730|consen 506 SKYVG------ESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNR 579 (693)
T ss_pred HHhcC------chHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCC
Confidence 11111 122223 33333434567999999884310 00112222222 221222223 333332
Q ss_pred hh-hhhc-cC---CcceEecCCCCHHHHHHHHHHHhc
Q 002044 309 ET-VARM-ME---STDVIFIKELSEQECWALFKRFAC 340 (976)
Q Consensus 309 ~~-v~~~-~~---~~~~~~l~~L~~~~~~~Lf~~~~~ 340 (976)
.+ +-.. +. ....+.++.=+.+.-.++|+.++-
T Consensus 580 pd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~k 616 (693)
T KOG0730|consen 580 PDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAK 616 (693)
T ss_pred hhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHh
Confidence 22 2222 22 245666766666677788888773
No 281
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.36 E-value=0.052 Score=55.18 Aligned_cols=61 Identities=10% Similarity=0.061 Sum_probs=36.1
Q ss_pred HHHHHcCCceEEEEcCCCCC-CccCcHhHHHhhcC-CCCCcEEEEEcCchhhhhccCCcceEecCC
Q 002044 262 IDAFIARKKFLLILDDVWTD-DYSKWEPFRRCLIN-GHRESRILVTTRKETVARMMESTDVIFIKE 325 (976)
Q Consensus 262 l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtR~~~v~~~~~~~~~~~l~~ 325 (976)
+...+..++-++++|+--.. |....+.+...+.. ...|..||++|.+...... ..++.++.
T Consensus 138 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~ 200 (207)
T PRK13539 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGP 200 (207)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecC
Confidence 34445567789999987431 22333444444443 2346678899888765543 56666655
No 282
>PRK04296 thymidine kinase; Provisional
Probab=95.35 E-value=0.035 Score=55.39 Aligned_cols=105 Identities=10% Similarity=-0.014 Sum_probs=54.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcccchhcccccceeehH---------HHHHHHhCCCC--CcccHHHHHHHHHHHHcCCc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE---------SIIEALEGFAP--NLGELNSLLLRIDAFIARKK 270 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---------~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~k~ 270 (976)
.++.|.|..|.||||+|..++. +...+...+..+.- .+...+.-... ......+....+.+ ..++.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~ 79 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEKI 79 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCCC
Confidence 4778999999999999988877 33222222232211 11111110000 01223344444444 23345
Q ss_pred eEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCchhh
Q 002044 271 FLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKETV 311 (976)
Q Consensus 271 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 311 (976)
-+||+|.+.--+.++...+...+ ...|..||+|.++...
T Consensus 80 dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 80 DCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDF 118 (190)
T ss_pred CEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCccc
Confidence 59999999432222223333332 3456789999987543
No 283
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.32 E-value=0.077 Score=61.15 Aligned_cols=59 Identities=25% Similarity=0.300 Sum_probs=41.9
Q ss_pred ccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeeh
Q 002044 175 EVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNC 238 (976)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 238 (976)
+++--.+-++++..||.....+ ....+++.+.|++|+||||.++.++++. .|+..-|..
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~-~~~~~iLlLtGP~G~GKtttv~~La~el----g~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSG-SSPKRILLLTGPSGCGKTTTVKVLAKEL----GFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhcc-CCCcceEEEECCCCCCHHHHHHHHHHHh----CCeeEEecC
Confidence 4444466788888888754321 3346799999999999999999999841 355555643
No 284
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.28 E-value=0.04 Score=52.21 Aligned_cols=41 Identities=27% Similarity=0.193 Sum_probs=30.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHH
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIE 243 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 243 (976)
..||-|.|.+|.||||||+++.+ +....-..+.++..+.+.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LDgD~lR 42 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLDGDNLR 42 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEEHHHHC
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEecCcchh
Confidence 35899999999999999999998 555555566666665444
No 285
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.28 E-value=0.015 Score=56.40 Aligned_cols=45 Identities=22% Similarity=0.295 Sum_probs=32.7
Q ss_pred cccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcc
Q 002044 176 VRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 176 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
++|....+.++++.+..... .+. -|.|+|..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~---~~~-pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS---SDL-PVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT---STS--EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhC---CCC-CEEEEcCCCCcHHHHHHHHHHh
Confidence 47888888888887765442 233 4569999999999999999984
No 286
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.26 E-value=0.031 Score=59.87 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=23.9
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhcc
Q 002044 199 NAVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 199 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
..++.++|||++|.|||.+|+.++++
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999994
No 287
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.25 E-value=0.029 Score=55.81 Aligned_cols=25 Identities=40% Similarity=0.481 Sum_probs=23.0
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhc
Q 002044 199 NAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 199 ~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..+.+|||.|.+|.||||+|+.++.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~ 30 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE 30 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3578999999999999999999988
No 288
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.24 E-value=0.041 Score=54.93 Aligned_cols=35 Identities=26% Similarity=0.155 Sum_probs=24.8
Q ss_pred EEEEEecCCchHHHHHHHHhcccchhcccccceeehH
Q 002044 203 IISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE 239 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 239 (976)
++.|.|.+|+|||++|.++... ....=..++|++.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~--~~~~g~~v~~~s~ 35 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYA--GLARGEPGLYVTL 35 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH--HHHCCCcEEEEEC
Confidence 3678999999999999988763 2222244667654
No 289
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.23 E-value=0.12 Score=52.66 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|.|..|.|||||++.+..
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999975
No 290
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.23 E-value=0.083 Score=51.91 Aligned_cols=58 Identities=12% Similarity=0.124 Sum_probs=34.4
Q ss_pred HHHHHHHHHHcCCceEEEEcCCCCC-CccCcHhHHHhhcC-CCCCcEEEEEcCchhhhhc
Q 002044 257 SLLLRIDAFIARKKFLLILDDVWTD-DYSKWEPFRRCLIN-GHRESRILVTTRKETVARM 314 (976)
Q Consensus 257 ~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtR~~~v~~~ 314 (976)
+..-.|.+.|.-++-++.+|..-+. |++...++...+.. ...|--.|+.|..-..|..
T Consensus 142 qQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~ 201 (240)
T COG1126 142 QQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFARE 201 (240)
T ss_pred HHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHH
Confidence 3444577888888999999998542 33333333333322 2345567777776655554
No 291
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.22 E-value=0.027 Score=54.44 Aligned_cols=67 Identities=21% Similarity=0.118 Sum_probs=54.0
Q ss_pred HhhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCC--CCCCCCCCCCCCcceeeccccc
Q 002044 765 VCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDK--CEVMPALGILPSLEVLKIRFMK 831 (976)
Q Consensus 765 ~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~--~~~l~~l~~L~~L~~L~L~~~~ 831 (976)
-.+.+..++.|..|.+.+|.++.+-|.--..+++|..|.|.+|.. +.++.++..+|+|++|.+-+++
T Consensus 56 ~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 56 KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence 345677788999999999998887555444678999999999864 4567788899999999998876
No 292
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.18 E-value=0.12 Score=53.83 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (237)
T cd03252 28 GEVVGIVGRSGSGKSTLTKLIQR 50 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999975
No 293
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.17 E-value=0.14 Score=53.29 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (234)
T cd03251 28 GETVALVGPSGSGKSTLVNLIPR 50 (234)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999975
No 294
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.16 E-value=0.028 Score=59.07 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=19.2
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.|.++|++|+||||+|+.+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 295
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.14 E-value=0.046 Score=55.70 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=29.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE 239 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 239 (976)
.-.++.|+|.+|+|||++|.+++.. ....-..++|++.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~ 48 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDT 48 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEC
Confidence 4579999999999999999988763 3334456777754
No 296
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.11 E-value=0.015 Score=54.00 Aligned_cols=21 Identities=38% Similarity=0.529 Sum_probs=19.3
Q ss_pred EEEEecCCchHHHHHHHHhcc
Q 002044 204 ISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 204 v~I~G~gGiGKTtLa~~v~~~ 224 (976)
|+|.|.+|+||||+|+++...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999883
No 297
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.11 E-value=0.091 Score=63.94 Aligned_cols=178 Identities=15% Similarity=0.144 Sum_probs=82.0
Q ss_pred CeEEEEEEecCCchHHHHHHHHhccc-chhcc-c-ccceeehHHHHHHHhCCC-------CCcccHHHHHHHHHHHHc--
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDE-DVISN-F-EKRMWNCESIIEALEGFA-------PNLGELNSLLLRIDAFIA-- 267 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~-~~~~~-f-~~~~wv~~~~~~~l~~~~-------~~~~~~~~~~~~l~~~l~-- 267 (976)
+.++++|.|+.|.||||+.+.+.... ..... | +...........++.... ........-...+...+.
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~~~ 400 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILSKT 400 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhheeeecChHhHHhhhhhHHHHHHHHHHHHHHhc
Confidence 35799999999999999999986531 00000 0 000000001111111000 011111111222333333
Q ss_pred CCceEEEEcCCCCC-CccCcHhH----HHhhcCCCCCcEEEEEcCchhhhhccCCcc-e--EecCCCCHHHHHHHHHHHh
Q 002044 268 RKKFLLILDDVWTD-DYSKWEPF----RRCLINGHRESRILVTTRKETVARMMESTD-V--IFIKELSEQECWALFKRFA 339 (976)
Q Consensus 268 ~k~~LlVlDdv~~~-~~~~~~~l----~~~l~~~~~gs~iivTtR~~~v~~~~~~~~-~--~~l~~L~~~~~~~Lf~~~~ 339 (976)
..+-|+++|..... |+.....+ ...+. ..|+.+|+||....+........ + ..+. ++.+ ... |....
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~~-~l~-p~Ykl 475 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDEE-TLS-PTYKL 475 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcCC-CCc-eEEEE
Confidence 47899999998542 22222233 22332 35788999999887654321111 1 1111 1100 000 11111
Q ss_pred cCCCCCCcchhHHHHHHHHHhhcCCCchHHHHHhhhhccCCCHHHHHHHHh
Q 002044 340 CFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTIGSLLRFKRTREEWQSILD 390 (976)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~l~ 390 (976)
.. +. +. ...|-+|++++ |+|-.+.--|..+... .......++.
T Consensus 476 ~~-G~--~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~ 518 (771)
T TIGR01069 476 LK-GI--PG---ESYAFEIAQRY-GIPHFIIEQAKTFYGE-FKEEINVLIE 518 (771)
T ss_pred CC-CC--CC---CcHHHHHHHHh-CcCHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 11 11 11 23455677776 7898888877766433 2334444443
No 298
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.09 E-value=0.055 Score=53.02 Aligned_cols=121 Identities=15% Similarity=0.134 Sum_probs=62.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhcc---cchhcc---c--ccceeehH-HHHHHHhCCC--CC-----cccHHHHHHHHHH
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYND---EDVISN---F--EKRMWNCE-SIIEALEGFA--PN-----LGELNSLLLRIDA 264 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~---~~~~~~---f--~~~~wv~~-~~~~~l~~~~--~~-----~~~~~~~~~~l~~ 264 (976)
-.+++|+|..|.|||||.+.+..+ ..+... | ..+.|+.- +.++.+.-.. .+ .+.-....-.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~lar 100 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLAS 100 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHHHHH
Confidence 358999999999999999998632 111111 1 01334322 2233322110 00 1111223333555
Q ss_pred HHcCC--ceEEEEcCCCCC-CccCcHhHHHhhcCC-CCCcEEEEEcCchhhhhccCCcceEec
Q 002044 265 FIARK--KFLLILDDVWTD-DYSKWEPFRRCLING-HRESRILVTTRKETVARMMESTDVIFI 323 (976)
Q Consensus 265 ~l~~k--~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~~~~~~~~~~l 323 (976)
.+..+ +-++++|+.-.. |....+.+...+... ..|..||++|.+...... ...++.+
T Consensus 101 al~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 101 ELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 56667 778889987331 223333344443321 246678889888766543 3344444
No 299
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.09 E-value=0.12 Score=53.05 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.++.
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999999975
No 300
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.08 E-value=0.0033 Score=63.25 Aligned_cols=98 Identities=21% Similarity=0.205 Sum_probs=62.8
Q ss_pred ccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccccCc--
Q 002044 549 YARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLPE-- 624 (976)
Q Consensus 549 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp~-- 624 (976)
++.+++.|++.+|.+++... ..+++.|+||.|+ -+.|..| ..+..+.+|+.|.| +.|..+-+
T Consensus 17 dl~~vkKLNcwg~~L~DIsi-------c~kMp~lEVLsLS------vNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~ 82 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISI-------CEKMPLLEVLSLS------VNKISSL-APLQRCTRLKELYLRKNCIESLDELE 82 (388)
T ss_pred HHHHhhhhcccCCCccHHHH-------HHhcccceeEEee------ccccccc-hhHHHHHHHHHHHHHhcccccHHHHH
Confidence 35567778888887654322 6788888998888 5556555 34667777777777 55555532
Q ss_pred cccccCCccEEecCCCCCCcccchh-----hcccCCCcEEE
Q 002044 625 TCCELLNLQTLNMCGSPGLKRLPQG-----IGKLINLRHLM 660 (976)
Q Consensus 625 ~i~~L~~L~~L~l~~~~~l~~lp~~-----i~~l~~L~~L~ 660 (976)
-+.+|++|++|.|..|+....-+.. +.-|+||+.||
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 3557777777777776655444332 34456666554
No 301
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.03 E-value=0.066 Score=57.45 Aligned_cols=77 Identities=21% Similarity=0.114 Sum_probs=46.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH------HHHHHHhCC-----CCCcccHHHHHHHHHHHHc-
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE------SIIEALEGF-----APNLGELNSLLLRIDAFIA- 267 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~------~~~~~l~~~-----~~~~~~~~~~~~~l~~~l~- 267 (976)
.-+++-|+|++|+||||||.+++.. ....-..++|++. ..++.+.-. .....+.++....+....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s 131 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRS 131 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhc
Confidence 4679999999999999999988762 3333445677765 122222110 0112234445555555444
Q ss_pred CCceEEEEcCC
Q 002044 268 RKKFLLILDDV 278 (976)
Q Consensus 268 ~k~~LlVlDdv 278 (976)
+.--+||+|-|
T Consensus 132 ~~~~lIVIDSv 142 (325)
T cd00983 132 GAVDLIVVDSV 142 (325)
T ss_pred cCCCEEEEcch
Confidence 34568999987
No 302
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.02 E-value=0.29 Score=58.76 Aligned_cols=156 Identities=13% Similarity=0.120 Sum_probs=80.9
Q ss_pred CccccchhHHHHHHHHHhccccc------CCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-HHHHHHh
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSE------QTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SIIEALE 246 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~l~ 246 (976)
.++.|.+...+++.+.+...... +..-.+-|.++|++|.|||++|+.+++. ....| +.+.. ++.....
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~~~~~~~~ 226 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSDFVEMFV 226 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehHHhHHhhh
Confidence 35677776666655544321100 0112334899999999999999999883 32233 22222 2222111
Q ss_pred CCCCCcccHHHHHHHHHHHHcCCceEEEEcCCCCCC----------ccCcHhHHHh----hcC--CCCCcEEEEEcCchh
Q 002044 247 GFAPNLGELNSLLLRIDAFIARKKFLLILDDVWTDD----------YSKWEPFRRC----LIN--GHRESRILVTTRKET 310 (976)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~l~~~----l~~--~~~gs~iivTtR~~~ 310 (976)
+. ........+.......+.+|++|+++.-. ...+...... +.. ...+.-+|.||...+
T Consensus 227 g~-----~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~ 301 (644)
T PRK10733 227 GV-----GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPD 301 (644)
T ss_pred cc-----cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChh
Confidence 11 11222223333344578899999984310 0112222111 111 123445555776554
Q ss_pred hhhc-c----CCcceEecCCCCHHHHHHHHHHHh
Q 002044 311 VARM-M----ESTDVIFIKELSEQECWALFKRFA 339 (976)
Q Consensus 311 v~~~-~----~~~~~~~l~~L~~~~~~~Lf~~~~ 339 (976)
.... . .-...+.+..-+.++-.+++..+.
T Consensus 302 ~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~ 335 (644)
T PRK10733 302 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 335 (644)
T ss_pred hcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHh
Confidence 3221 1 124577788888888888887765
No 303
>PRK07667 uridine kinase; Provisional
Probab=95.01 E-value=0.027 Score=56.49 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=28.1
Q ss_pred HHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhc
Q 002044 183 KNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 183 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+.+.+.+.... ....+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 345555554332 3458999999999999999999987
No 304
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=94.99 E-value=0.043 Score=56.24 Aligned_cols=76 Identities=16% Similarity=0.169 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHhhcCcHHHHHHHHHHHHHHHHHHHHH-HhcccCChhHHHHHHHHHHhhcchhhhhHHH
Q 002044 5 IVSVVLQQLISVAVEETKGGVRLVTGVGTEVKRLQDNLEAIQAVLVDA-ERRQLEELPVRLWLEKLKEASYDMEDMLDEW 83 (976)
Q Consensus 5 ~v~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a-~~~~~~~~~~~~wl~~l~~~~yd~ed~ld~~ 83 (976)
.|..++.+|-. +.......+.-++.+++-++.+++.+|.||+.. +....+.+....++.++-..||++|+++|-+
T Consensus 297 yVdFlL~NLkd----fq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaC 372 (402)
T PF12061_consen 297 YVDFLLKNLKD----FQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDAC 372 (402)
T ss_pred HHHHHHhhHHH----HhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehh
Confidence 35556666666 555555667778999999999999999999986 4434444458899999999999999999987
Q ss_pred H
Q 002044 84 N 84 (976)
Q Consensus 84 ~ 84 (976)
.
T Consensus 373 i 373 (402)
T PF12061_consen 373 I 373 (402)
T ss_pred h
Confidence 4
No 305
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.97 E-value=0.068 Score=54.39 Aligned_cols=114 Identities=11% Similarity=0.084 Sum_probs=57.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-------HHHHHHhCCC---CCcccHHHHHHHHHHH--HcC
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-------SIIEALEGFA---PNLGELNSLLLRIDAF--IAR 268 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-------~~~~~l~~~~---~~~~~~~~~~~~l~~~--l~~ 268 (976)
.+++.|+|..|.||||+.+.+...... .+-...+|... .+...+.... ........-.+++... +..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~ 107 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLAT 107 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCC
Confidence 488999999999999999998742111 11111111110 1111111110 1111222222333333 346
Q ss_pred CceEEEEcCCCCCC-ccCc----HhHHHhhcCC-CCCcEEEEEcCchhhhhcc
Q 002044 269 KKFLLILDDVWTDD-YSKW----EPFRRCLING-HRESRILVTTRKETVARMM 315 (976)
Q Consensus 269 k~~LlVlDdv~~~~-~~~~----~~l~~~l~~~-~~gs~iivTtR~~~v~~~~ 315 (976)
++.|+++|...... ..+. ..+...+... ..+..+|+||.+..++...
T Consensus 108 ~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 108 RRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred CCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 88999999985421 1111 1223333322 2345799999988776543
No 306
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.97 E-value=0.072 Score=52.66 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.++.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999985
No 307
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.96 E-value=0.063 Score=65.35 Aligned_cols=129 Identities=19% Similarity=0.179 Sum_probs=69.5
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-----HHH-HHHhC
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-----SII-EALEG 247 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-----~~~-~~l~~ 247 (976)
..++|+...+..+.+.+..... .-.-|.|.|..|+|||++|+.+++... +.... .+.+++ ..+ ..+.+
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~-r~~~~-~v~i~c~~~~~~~~~~~lfg 449 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSG-RNNRR-MVKMNCAAMPAGLLESDLFG 449 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcC-CCCCC-eEEEecccCChhHhhhhhcC
Confidence 4699999888888777664332 234678999999999999999987421 11112 122222 111 12222
Q ss_pred CCCCcccHHHHHHHHHHHHcCCceEEEEcCCCCCCccCcHhHHHhhcCCC-----------CCcEEEEEcCch
Q 002044 248 FAPNLGELNSLLLRIDAFIARKKFLLILDDVWTDDYSKWEPFRRCLINGH-----------RESRILVTTRKE 309 (976)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~~ 309 (976)
...+...- .........-....-.|+||+|..-.......+...+..+. .+.|||.||...
T Consensus 450 ~~~~~~~g-~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 450 HERGAFTG-ASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred cccccccc-cccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 21111000 00001111112234579999996544444455666554321 345888888643
No 308
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=94.95 E-value=0.077 Score=55.25 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.++.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G 49 (236)
T TIGR03864 27 GEFVALLGPNGAGKSTLFSLLTR 49 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999975
No 309
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.94 E-value=0.14 Score=56.42 Aligned_cols=147 Identities=16% Similarity=0.152 Sum_probs=80.3
Q ss_pred ccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccc-----cceeehHHHHHH-----
Q 002044 175 EVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFE-----KRMWNCESIIEA----- 244 (976)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-----~~~wv~~~~~~~----- 244 (976)
.++|-+....++..+..... .....+.++|++|+||||+|..+++. +..... +..+-....+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~d 75 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKE--LLCENPTGLLPCGHCRSCKLIPAGNHPD 75 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHH--HhCCCcccCCcccchhhhhHHhhcCCCc
Confidence 46777888888888887432 13346999999999999999999873 221110 000000000000
Q ss_pred HhC-CCCCccc---HHHHHHHHHHHHc-----CCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCc-hhhhhc
Q 002044 245 LEG-FAPNLGE---LNSLLLRIDAFIA-----RKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRK-ETVARM 314 (976)
Q Consensus 245 l~~-~~~~~~~---~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~ 314 (976)
+.. ...+... ..+.+..+.+... ++.-++|+|++..-..+.-..+...+......+++|++|.. ..+...
T Consensus 76 ~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~t 155 (325)
T COG0470 76 FLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPT 155 (325)
T ss_pred eEEecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccch
Confidence 000 0111111 2333333443332 45679999999654444445566666666667888888873 333332
Q ss_pred c-CCcceEecCCCC
Q 002044 315 M-ESTDVIFIKELS 327 (976)
Q Consensus 315 ~-~~~~~~~l~~L~ 327 (976)
+ .....+++.+.+
T Consensus 156 I~SRc~~i~f~~~~ 169 (325)
T COG0470 156 IRSRCQRIRFKPPS 169 (325)
T ss_pred hhhcceeeecCCch
Confidence 2 235567777633
No 310
>PRK12608 transcription termination factor Rho; Provisional
Probab=94.94 E-value=0.051 Score=58.97 Aligned_cols=89 Identities=19% Similarity=0.088 Sum_probs=50.4
Q ss_pred HHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhccc-cc-ceeehH--------HHHHHHhC----C
Q 002044 183 KNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNF-EK-RMWNCE--------SIIEALEG----F 248 (976)
Q Consensus 183 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~-~~wv~~--------~~~~~l~~----~ 248 (976)
..++++.+..-. .-.-+.|+|.+|+|||||++.+++ .+.... +. ++|+.+ ++.+.+.+ .
T Consensus 120 ~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 120 SMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred hHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 345777776322 224559999999999999999888 343332 33 244433 44444432 1
Q ss_pred CCCcccH-----HHHHHHHHHHH--cCCceEEEEcCC
Q 002044 249 APNLGEL-----NSLLLRIDAFI--ARKKFLLILDDV 278 (976)
Q Consensus 249 ~~~~~~~-----~~~~~~l~~~l--~~k~~LlVlDdv 278 (976)
..+.... ......+.+++ .+++++||+|++
T Consensus 193 t~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 193 TFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 1111111 11222233333 478999999999
No 311
>PRK06547 hypothetical protein; Provisional
Probab=94.93 E-value=0.031 Score=54.57 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=23.2
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhcc
Q 002044 199 NAVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 199 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
....+|+|.|.+|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999873
No 312
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.92 E-value=0.17 Score=49.75 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+|+|+|.+|+||||+|+.++.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999987
No 313
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.91 E-value=0.018 Score=57.82 Aligned_cols=21 Identities=48% Similarity=0.596 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
||+|.|.+|+||||+|+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999987
No 314
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.88 E-value=0.024 Score=55.31 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..++.+.|+.|+|||.||+.++.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~ 25 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE 25 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHH
Confidence 56889999999999999999887
No 315
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.88 E-value=0.091 Score=54.04 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTG 50 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999975
No 316
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.87 E-value=0.18 Score=52.46 Aligned_cols=60 Identities=15% Similarity=0.214 Sum_probs=34.6
Q ss_pred HHHHHcCCceEEEEcCCCCC-CccCcHhHHHhhcCCCCCcEEEEEcCchhhhhccCCcceEec
Q 002044 262 IDAFIARKKFLLILDDVWTD-DYSKWEPFRRCLINGHRESRILVTTRKETVARMMESTDVIFI 323 (976)
Q Consensus 262 l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l 323 (976)
+...|..++-++++|+.... |....+.+...+.....|..||++|.+...... ...++.+
T Consensus 148 la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~--~d~~~~l 208 (236)
T cd03253 148 IARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN--ADKIIVL 208 (236)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh--CCEEEEE
Confidence 44556677889999998532 223334444444432236678888887766543 3344444
No 317
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.049 Score=56.37 Aligned_cols=76 Identities=17% Similarity=0.220 Sum_probs=47.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchh--cccccceeehH---HHHHHHhCCCCCcccHHHHHHHHHHHHcCCce--EE
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVI--SNFEKRMWNCE---SIIEALEGFAPNLGELNSLLLRIDAFIARKKF--LL 273 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~f~~~~wv~~---~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~--Ll 273 (976)
-|+|.++|++|.|||+|++++++.-.++ ..|....-+.+ ++...-.+. ...-+....++|.+.+.++.. ++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsE--SgKlV~kmF~kI~ELv~d~~~lVfv 254 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSE--SGKLVAKMFQKIQELVEDRGNLVFV 254 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhh--hhhHHHHHHHHHHHHHhCCCcEEEE
Confidence 4899999999999999999999864333 34433333222 232222211 112344556677777776654 55
Q ss_pred EEcCC
Q 002044 274 ILDDV 278 (976)
Q Consensus 274 VlDdv 278 (976)
.+|.|
T Consensus 255 LIDEV 259 (423)
T KOG0744|consen 255 LIDEV 259 (423)
T ss_pred EeHHH
Confidence 68988
No 318
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.54 Score=55.59 Aligned_cols=179 Identities=15% Similarity=0.106 Sum_probs=98.6
Q ss_pred CccccchhHH---HHHHHHHhcccc---cCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH---HHHHH
Q 002044 174 SEVRGRVEEK---NALKSKLLCKSS---EQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE---SIIEA 244 (976)
Q Consensus 174 ~~~~Gr~~~~---~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~~~ 244 (976)
.++.|-++.+ .++++.|..+.. -+..-++=|.++|++|.|||-||++++....+ -|+++ +..+.
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-------PF~svSGSEFvE~ 383 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSVSGSEFVEM 383 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC-------ceeeechHHHHHH
Confidence 4677876654 555555654431 11334677899999999999999999985432 23332 33333
Q ss_pred HhCCCCCcccHHHHHHHHHHHH-cCCceEEEEcCCCCCC---------------ccCcHhHHHhhcCCC--CCcEEEEEc
Q 002044 245 LEGFAPNLGELNSLLLRIDAFI-ARKKFLLILDDVWTDD---------------YSKWEPFRRCLINGH--RESRILVTT 306 (976)
Q Consensus 245 l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~---------------~~~~~~l~~~l~~~~--~gs~iivTt 306 (976)
+-+.. ...+..+...- .+.+.+|.+|++.... ...+.++..-+.... .+--++-+|
T Consensus 384 ~~g~~------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~t 457 (774)
T KOG0731|consen 384 FVGVG------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAAT 457 (774)
T ss_pred hcccc------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEecc
Confidence 32211 12222233222 3568899999884211 011222222222222 222334445
Q ss_pred Cchhhhhc--c--C-CcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHH
Q 002044 307 RKETVARM--M--E-STDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAA 369 (976)
Q Consensus 307 R~~~v~~~--~--~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 369 (976)
+..++... + + -...+.++.-+.....++|..++..-. ...+..++++ |+...-|.+=|.
T Consensus 458 nr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~---~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 458 NRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKK---LDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccC---CCcchhhHHH-HHhcCCCCcHHH
Confidence 54443322 1 2 256788888888899999998873322 2234455666 888888877543
No 319
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.83 E-value=0.049 Score=52.71 Aligned_cols=22 Identities=41% Similarity=0.495 Sum_probs=20.0
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
+.|.+.|.+|+||||+|+++++
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 4678899999999999999987
No 320
>PRK05973 replicative DNA helicase; Provisional
Probab=94.82 E-value=0.14 Score=52.41 Aligned_cols=38 Identities=16% Similarity=0.071 Sum_probs=26.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE 239 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 239 (976)
.-.++.|.|.+|+|||++|.++... ...+-..++|++.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~--~a~~Ge~vlyfSl 100 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVE--AMKSGRTGVFFTL 100 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEE
Confidence 4468899999999999999988763 2222334556654
No 321
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.81 E-value=0.075 Score=57.03 Aligned_cols=78 Identities=18% Similarity=0.098 Sum_probs=46.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH------HHHHHHhCC-----CCCcccHHHHHHHHHHHHc-
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE------SIIEALEGF-----APNLGELNSLLLRIDAFIA- 267 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~------~~~~~l~~~-----~~~~~~~~~~~~~l~~~l~- 267 (976)
.-+++-|+|.+|+||||||.+++.. ....-..++|++. ...+.+.-. .......++....+....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~ 131 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRS 131 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 5579999999999999999887763 3333345667765 112222110 0112234445555555444
Q ss_pred CCceEEEEcCCC
Q 002044 268 RKKFLLILDDVW 279 (976)
Q Consensus 268 ~k~~LlVlDdv~ 279 (976)
+..-+||+|.|-
T Consensus 132 ~~~~lIVIDSv~ 143 (321)
T TIGR02012 132 GAVDIIVVDSVA 143 (321)
T ss_pred cCCcEEEEcchh
Confidence 456699999983
No 322
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.79 E-value=0.11 Score=52.52 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.++.
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G 49 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAG 49 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999975
No 323
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.76 E-value=0.016 Score=52.20 Aligned_cols=29 Identities=34% Similarity=0.481 Sum_probs=19.9
Q ss_pred EEEEecCCchHHHHHHHHhcccchhcccccc
Q 002044 204 ISLVGMGGIGKTTLAQFAYNDEDVISNFEKR 234 (976)
Q Consensus 204 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~ 234 (976)
|-|+|.+|+||||+|+.++. .+...|..+
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEEE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeEE
Confidence 57899999999999999998 566777543
No 324
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.064 Score=53.69 Aligned_cols=96 Identities=19% Similarity=0.221 Sum_probs=56.5
Q ss_pred CccccchhHHHHHHHHHhccccc-------CCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHh
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSE-------QTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALE 246 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~ 246 (976)
+++=|=.+.++++.+.+..+--+ +-+..+-|.++|++|.|||-+|++|+| +....|-.++- ..+.+..-
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacfirvig--selvqkyv 252 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACFIRVIG--SELVQKYV 252 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceEEeehh--HHHHHHHh
Confidence 45667778888888776543211 124567789999999999999999999 54444422210 12222222
Q ss_pred CCCCCcccHHHHHHHHHHHHc-CCceEEEEcCCC
Q 002044 247 GFAPNLGELNSLLLRIDAFIA-RKKFLLILDDVW 279 (976)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~ 279 (976)
+ +-......+.+.-+ .|-++|++|.+.
T Consensus 253 g------egarmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 253 G------EGARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred h------hhHHHHHHHHHHhcccceEEEEeeccc
Confidence 1 11222333333334 456788899883
No 325
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.74 E-value=0.024 Score=57.83 Aligned_cols=25 Identities=40% Similarity=0.550 Sum_probs=22.8
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhc
Q 002044 199 NAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 199 ~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+..+|+|.|.+|+||||||+.++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999987
No 326
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.74 E-value=0.054 Score=59.19 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=36.7
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhc
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..++|+...+.++.+.+..... .-.-|.|.|..|+||+++|+.++.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHH
Confidence 3589999888888888765442 233578999999999999999986
No 327
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.74 E-value=0.16 Score=48.95 Aligned_cols=110 Identities=22% Similarity=0.218 Sum_probs=60.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhccc-----ch-hcccccceeehH--HHHHHHh------CCC-----CCcc----cHHH
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDE-----DV-ISNFEKRMWNCE--SIIEALE------GFA-----PNLG----ELNS 257 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~-----~~-~~~f~~~~wv~~--~~~~~l~------~~~-----~~~~----~~~~ 257 (976)
...|-|++-.|.||||.|..++-.. ++ --+|-...|... .+++.+. +.. .+.. ...+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~ 84 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKA 84 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHH
Confidence 3578888889999999997665421 11 012322233222 2333321 000 0000 1122
Q ss_pred HHHHHHHHHcCCce-EEEEcCCCC---CCccCcHhHHHhhcCCCCCcEEEEEcCchh
Q 002044 258 LLLRIDAFIARKKF-LLILDDVWT---DDYSKWEPFRRCLINGHRESRILVTTRKET 310 (976)
Q Consensus 258 ~~~~l~~~l~~k~~-LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 310 (976)
.....++.+...+| |+|||.+-. ....+.+.+...+.....+..||+|-|+..
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 33334455555555 999999831 123445667777766677789999999763
No 328
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.73 E-value=0.15 Score=53.65 Aligned_cols=109 Identities=15% Similarity=0.088 Sum_probs=58.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchh---cccccceeehH----HHHHHHhCCCC-------CcccHHHHHHHHHHH
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVI---SNFEKRMWNCE----SIIEALEGFAP-------NLGELNSLLLRIDAF 265 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~f~~~~wv~~----~~~~~l~~~~~-------~~~~~~~~~~~l~~~ 265 (976)
+.+-++|+|..|.|||||.+.++....-. -.|+..-...+ .+......... +..+-......+...
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~ 189 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMML 189 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHH
Confidence 46789999999999999999998732110 01221111111 22221111110 000111112233333
Q ss_pred Hc-CCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCchhhhh
Q 002044 266 IA-RKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKETVAR 313 (976)
Q Consensus 266 l~-~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 313 (976)
+. ..+-++++|.+-. ...+..+...+ ..|..||+||.+..+..
T Consensus 190 i~~~~P~villDE~~~--~e~~~~l~~~~---~~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 190 IRSMSPDVIVVDEIGR--EEDVEALLEAL---HAGVSIIATAHGRDVED 233 (270)
T ss_pred HHhCCCCEEEEeCCCc--HHHHHHHHHHH---hCCCEEEEEechhHHHH
Confidence 33 5788999999843 34455555444 24678999998766543
No 329
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.72 E-value=0.14 Score=51.66 Aligned_cols=113 Identities=15% Similarity=0.127 Sum_probs=59.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhccc--c-hhc--cccc---------------ceeehH-------HHHHHHhCCC-CCc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDE--D-VIS--NFEK---------------RMWNCE-------SIIEALEGFA-PNL 252 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~--~-~~~--~f~~---------------~~wv~~-------~~~~~l~~~~-~~~ 252 (976)
-.+++|+|..|.|||||.+.+.... . ..+ .|+. +.++.- .....+.... ...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~~~~L 105 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYVNEGF 105 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhccccC
Confidence 4599999999999999999998741 0 011 0110 111111 0001110111 122
Q ss_pred ccHHHHHHHHHHHHcCCceEEEEcCCCC-CCccCcHhHHHhhcCC-CCCcEEEEEcCchhhhh
Q 002044 253 GELNSLLLRIDAFIARKKFLLILDDVWT-DDYSKWEPFRRCLING-HRESRILVTTRKETVAR 313 (976)
Q Consensus 253 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~ 313 (976)
+.-....-.+...+-.++-++++|+.-. -|....+.+...+... ..|.-||++|.+.....
T Consensus 106 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 106 SGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 2222333445566777888999999843 1222333343333322 23567888888766554
No 330
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.72 E-value=0.021 Score=46.16 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=19.3
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
+|+|.|..|+||||+|+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999887
No 331
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.46 Score=53.77 Aligned_cols=151 Identities=19% Similarity=0.262 Sum_probs=83.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH---HHHHHHhCCCCCcccHHHHHHH-HHHHHcCCceEEEEc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE---SIIEALEGFAPNLGELNSLLLR-IDAFIARKKFLLILD 276 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~~~l~~~~~~~~~~~~~~~~-l~~~l~~k~~LlVlD 276 (976)
..=|.+||++|.|||-||++|+|+ ....| +++ .++...-+ +.+..++. +++.-...++.|+||
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGPELlNkYVG------ESErAVR~vFqRAR~saPCVIFFD 611 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGPELLNKYVG------ESERAVRQVFQRARASAPCVIFFD 611 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCHHHHHHHhh------hHHHHHHHHHHHhhcCCCeEEEec
Confidence 456789999999999999999994 44444 222 22222111 22223333 334445679999999
Q ss_pred CCCC-----CCccCc--HhHHHh----hcC--CCCCcEEEEEcCchhhhhc-c---CC-cceEecCCCCHHHHHHHHHHH
Q 002044 277 DVWT-----DDYSKW--EPFRRC----LIN--GHRESRILVTTRKETVARM-M---ES-TDVIFIKELSEQECWALFKRF 338 (976)
Q Consensus 277 dv~~-----~~~~~~--~~l~~~----l~~--~~~gs~iivTtR~~~v~~~-~---~~-~~~~~l~~L~~~~~~~Lf~~~ 338 (976)
.+.. .+...| ..+... +.. ...|.-||-.|...++... + +. ....-++.-+.+|-.++++..
T Consensus 612 EiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~ 691 (802)
T KOG0733|consen 612 EIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTI 691 (802)
T ss_pred chhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHH
Confidence 9942 111122 112222 222 2356667777765554332 1 22 456777888888888999877
Q ss_pred hcCCCCC-CcchhHHHHHHHHHhhcCCCc
Q 002044 339 ACFGRSL-SECEQLEEIGKKIVGKCKGLP 366 (976)
Q Consensus 339 ~~~~~~~-~~~~~~~~~~~~i~~~c~GlP 366 (976)
.-....+ ..+-.+.+++.. .+|.|.-
T Consensus 692 tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 692 TKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred hccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 6421211 223455664432 3455543
No 332
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.70 E-value=0.086 Score=53.23 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhcc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
-.+++|+|..|.|||||++.++..
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999998763
No 333
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.69 E-value=0.14 Score=48.90 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
||.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999887
No 334
>PRK08233 hypothetical protein; Provisional
Probab=94.68 E-value=0.024 Score=56.31 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhcc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
..+|+|.|.+|+||||+|+.++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999873
No 335
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.67 E-value=0.23 Score=51.78 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.++.
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~i~G 51 (238)
T cd03249 29 GKTVALVGSSGCGKSTVVSLLER 51 (238)
T ss_pred CCEEEEEeCCCCCHHHHHHHHhc
Confidence 35999999999999999999975
No 336
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.67 E-value=0.089 Score=62.05 Aligned_cols=49 Identities=14% Similarity=0.134 Sum_probs=38.8
Q ss_pred cCCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcc
Q 002044 172 DLSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 172 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
....++|....+.++.+.+..... ...-|.|+|..|+|||++|+.+++.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHh
Confidence 346799999999998888764432 2335679999999999999999874
No 337
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.66 E-value=0.099 Score=50.42 Aligned_cols=110 Identities=21% Similarity=0.253 Sum_probs=60.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-HH----HHHHhC---CCCCcccHHHHHHHHHHHHcCCceEE
Q 002044 202 QIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SI----IEALEG---FAPNLGELNSLLLRIDAFIARKKFLL 273 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~----~~~l~~---~~~~~~~~~~~~~~l~~~l~~k~~Ll 273 (976)
.+++|+|..|.|||||++.+..... .....+++.. .+ ...... ...+...-+...-.+...+..++-++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEE
Confidence 5899999999999999999987321 2233333322 00 000000 00112222333344666677778999
Q ss_pred EEcCCCCC-CccCcHhHHHhhcCC-CCCcEEEEEcCchhhhhc
Q 002044 274 ILDDVWTD-DYSKWEPFRRCLING-HRESRILVTTRKETVARM 314 (976)
Q Consensus 274 VlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~~ 314 (976)
++|+.-.. |......+...+... ..+..+|++|.+......
T Consensus 103 ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 103 LLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99998431 222333343333321 124578888887665543
No 338
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.66 E-value=0.076 Score=54.52 Aligned_cols=37 Identities=19% Similarity=0.125 Sum_probs=27.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchhcccccceeeh
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNC 238 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 238 (976)
.-.++.|.|.+|+||||+|.+++.. ....-..++|++
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~ 54 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYID 54 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE
Confidence 4579999999999999999998863 322223456664
No 339
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.65 E-value=0.039 Score=58.90 Aligned_cols=50 Identities=24% Similarity=0.269 Sum_probs=44.4
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhc
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+|+|.++.++++++.+...+.+.+..-+|+.++|+.|.||||||..+-+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999877665566789999999999999999998876
No 340
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.64 E-value=0.081 Score=55.08 Aligned_cols=40 Identities=20% Similarity=0.109 Sum_probs=28.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchhcc----cccceeehH
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVISN----FEKRMWNCE 239 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~ 239 (976)
.-.++.|+|.+|+|||++|.+++........ -..++|++.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~ 61 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDT 61 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeC
Confidence 4579999999999999999998743222221 246778764
No 341
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.63 E-value=0.21 Score=51.62 Aligned_cols=22 Identities=36% Similarity=0.606 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|..|.|||||.+.+..
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G 51 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMR 51 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999975
No 342
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.62 E-value=0.096 Score=56.00 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||.+.++.
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G 55 (279)
T PRK13650 33 GEWLSIIGHNGSGKSTTVRLIDG 55 (279)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999975
No 343
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.59 E-value=0.027 Score=57.19 Aligned_cols=24 Identities=42% Similarity=0.497 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+|+|+|.+|+||||||+.++.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999986
No 344
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.56 E-value=0.084 Score=53.18 Aligned_cols=111 Identities=17% Similarity=0.210 Sum_probs=57.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-----HHHHHHhCC---C----CCcccHHHHHHHHHHHH--
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-----SIIEALEGF---A----PNLGELNSLLLRIDAFI-- 266 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-----~~~~~l~~~---~----~~~~~~~~~~~~l~~~l-- 266 (976)
.+++.|.|..|.||||+.+.+..-. +..+ ...+|.+ .+.+.+... . ...........++...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~--~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~ 105 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQ--IGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILDY 105 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHH--cCCCcchhhcCccChhheeEecCCccccchhhhHHHHHHHHHHHHHHh
Confidence 4789999999999999999886421 1111 1112221 111111111 0 01111111122222222
Q ss_pred cCCceEEEEcCCCCC-CccC----cHhHHHhhcCCCCCcEEEEEcCchhhhhccC
Q 002044 267 ARKKFLLILDDVWTD-DYSK----WEPFRRCLINGHRESRILVTTRKETVARMME 316 (976)
Q Consensus 267 ~~k~~LlVlDdv~~~-~~~~----~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~ 316 (976)
..++-|+++|..... +..+ ...+...+.. .|+.+|++|.+..++..+.
T Consensus 106 ~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 106 ADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred cCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 367889999998432 1111 1123333333 3788999999988877654
No 345
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.52 E-value=0.11 Score=52.24 Aligned_cols=109 Identities=13% Similarity=0.254 Sum_probs=55.6
Q ss_pred EEEEEEecCCchHHHHHHHHhcccch--hcc--------cc-cceeehHHHHHHHhCCCCCcccHHHHHHHHHHHHcC--
Q 002044 202 QIISLVGMGGIGKTTLAQFAYNDEDV--ISN--------FE-KRMWNCESIIEALEGFAPNLGELNSLLLRIDAFIAR-- 268 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~--------f~-~~~wv~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~-- 268 (976)
++++|.|..|.|||||.+.+.....+ .+. |. ..++......+.+.. ..........++.+.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~---~~s~~~~e~~~~~~iL~~~~ 102 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRD---GISYFYAELRRLKEIVEKAK 102 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhcccc---ccChHHHHHHHHHHHHHhcc
Confidence 79999999999999999988752111 000 00 011111111111111 011111112334444432
Q ss_pred --CceEEEEcCCCCC-CccCcHhH----HHhhcCCCCCcEEEEEcCchhhhhcc
Q 002044 269 --KKFLLILDDVWTD-DYSKWEPF----RRCLINGHRESRILVTTRKETVARMM 315 (976)
Q Consensus 269 --k~~LlVlDdv~~~-~~~~~~~l----~~~l~~~~~gs~iivTtR~~~v~~~~ 315 (976)
++-++++|..-.. +......+ ...+. ..|..+|++|.+...+...
T Consensus 103 ~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~--~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 103 KGEPVLFLLDEIFKGTNSRERQAASAAVLKFLK--NKNTIGIISTHDLELADLL 154 (199)
T ss_pred CCCCeEEEEecccCCCCHHHHHHHHHHHHHHHH--HCCCEEEEEcCcHHHHHhh
Confidence 7899999997431 11222222 22232 2367899999987766554
No 346
>PTZ00301 uridine kinase; Provisional
Probab=94.50 E-value=0.027 Score=56.81 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47999999999999999998876
No 347
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.47 E-value=0.12 Score=50.52 Aligned_cols=110 Identities=18% Similarity=0.200 Sum_probs=61.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhccc-----ch-hcccccceeehH--HHHHHHhC-------CC--CCccc-------HH
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDE-----DV-ISNFEKRMWNCE--SIIEALEG-------FA--PNLGE-------LN 256 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~-----~~-~~~f~~~~wv~~--~~~~~l~~-------~~--~~~~~-------~~ 256 (976)
...|-|+|-.|-||||.|.-+.-.. ++ --+|-..-|-+. ..++.+.. .. ....+ ..
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~ 101 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAAR 101 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHH
Confidence 4688999999999999997665421 11 012222222221 33333211 00 00011 11
Q ss_pred HHHHHHHHHHcCCce-EEEEcCCCC---CCccCcHhHHHhhcCCCCCcEEEEEcCchh
Q 002044 257 SLLLRIDAFIARKKF-LLILDDVWT---DDYSKWEPFRRCLINGHRESRILVTTRKET 310 (976)
Q Consensus 257 ~~~~~l~~~l~~k~~-LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 310 (976)
+.....++.+...+| |+|||.+-. ......+.+...+.....+..||+|-|+..
T Consensus 102 ~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 102 EGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 223334455555444 999999832 223455677777776677789999999753
No 348
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.47 E-value=0.13 Score=55.66 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||.+.+..
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~G 50 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITG 50 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999975
No 349
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.46 E-value=0.14 Score=50.88 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhcc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
-.+++|+|..|.|||||++.++.-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999863
No 350
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.46 E-value=0.2 Score=51.45 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.+..
T Consensus 30 G~~~~i~G~nGsGKSTLl~~i~G 52 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAG 52 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999975
No 351
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.44 E-value=0.12 Score=52.73 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhcc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
-.+++|+|..|.|||||++.++..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999763
No 352
>PRK09354 recA recombinase A; Provisional
Probab=94.44 E-value=0.1 Score=56.46 Aligned_cols=78 Identities=19% Similarity=0.112 Sum_probs=47.4
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH------HHHHHHhCC-----CCCcccHHHHHHHHHHHHc-
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE------SIIEALEGF-----APNLGELNSLLLRIDAFIA- 267 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~------~~~~~l~~~-----~~~~~~~~~~~~~l~~~l~- 267 (976)
.-+++-|+|.+|+||||||.+++.. ....-..++|+.. ...+.+.-. .......++....+...++
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s 136 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRS 136 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 5679999999999999999888763 3333455677765 222222110 0112234444555555544
Q ss_pred CCceEEEEcCCC
Q 002044 268 RKKFLLILDDVW 279 (976)
Q Consensus 268 ~k~~LlVlDdv~ 279 (976)
+..-+||+|-|-
T Consensus 137 ~~~~lIVIDSva 148 (349)
T PRK09354 137 GAVDLIVVDSVA 148 (349)
T ss_pred CCCCEEEEeChh
Confidence 345689999983
No 353
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.43 E-value=0.14 Score=52.32 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
+++|+|..|.|||||++.++.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999975
No 354
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.42 E-value=0.022 Score=57.45 Aligned_cols=48 Identities=19% Similarity=0.172 Sum_probs=34.0
Q ss_pred ccccccCccccccCCccEEecCCC--CCCcccchhhcccCCCcEEEeccccccc
Q 002044 617 YLVEKLPETCCELLNLQTLNMCGS--PGLKRLPQGIGKLINLRHLMFEVDYLEY 668 (976)
Q Consensus 617 ~~~~~lp~~i~~L~~L~~L~l~~~--~~l~~lp~~i~~l~~L~~L~l~~~~l~~ 668 (976)
+.+..+| .|++|++|.++.| .....++.-..++++|++|+++.|.++.
T Consensus 56 tt~~~~P----~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 56 TTLTNFP----KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred eecccCC----CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence 4444455 5678888888888 4445566666677888888888887765
No 355
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.36 E-value=0.14 Score=52.28 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.++.
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G 49 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNG 49 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999975
No 356
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.34 E-value=0.14 Score=53.54 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhcc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
-.+++|+|..|+|||||++.++..
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999763
No 357
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.32 E-value=0.078 Score=57.87 Aligned_cols=44 Identities=14% Similarity=0.116 Sum_probs=33.2
Q ss_pred cccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhc
Q 002044 176 VRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 176 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
++|....+.++.+.+..... .-.-|.|.|..|+||+++|+.+++
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~ 44 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHY 44 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHH
Confidence 46777777777777664432 234578999999999999999986
No 358
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.31 E-value=0.069 Score=58.53 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++++|+.|+||||++.++..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999987
No 359
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.31 E-value=0.16 Score=60.85 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-..|+|+|..|+|||||++.+..
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999854
No 360
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.29 E-value=0.16 Score=52.55 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.-.++.|+|.+|+|||+||.+++.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~ 41 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAV 41 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHH
Confidence 457999999999999999998875
No 361
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.27 E-value=0.078 Score=51.49 Aligned_cols=140 Identities=11% Similarity=0.130 Sum_probs=69.2
Q ss_pred EEEEecCCchHHHHHHHHhcccchhcccccceeehH------HHHHHHh---CCCCCcccHHHHHHHHHHHHcC--CceE
Q 002044 204 ISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE------SIIEALE---GFAPNLGELNSLLLRIDAFIAR--KKFL 272 (976)
Q Consensus 204 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~------~~~~~l~---~~~~~~~~~~~~~~~l~~~l~~--k~~L 272 (976)
+.|.|.+|+|||++|.++... ....++++.- ++.+.+. ...+......+....+.+.+.. +.-.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~ 76 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDV 76 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCE
Confidence 678999999999999998763 1123333321 2222222 1122222222333344444432 2347
Q ss_pred EEEcCCC--C-----CCc--------cCcHhHHHhhcCCCCCcEEEEEcCchhhhhccCCcceEecCCCCHHHHHHHHHH
Q 002044 273 LILDDVW--T-----DDY--------SKWEPFRRCLINGHRESRILVTTRKETVARMMESTDVIFIKELSEQECWALFKR 337 (976)
Q Consensus 273 lVlDdv~--~-----~~~--------~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 337 (976)
+++|.+- - .+. ..+..+...+. ..+..+|++|. .|. ....+.+..-+.|..
T Consensus 77 VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~viVsn--EvG----------~g~vp~~~~~r~f~d 142 (169)
T cd00544 77 VLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVR--NKPGTLILVSN--EVG----------LGVVPENALGRRFRD 142 (169)
T ss_pred EEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHH--cCCCcEEEEEC--CcC----------CCCCCCCHHHHHHHH
Confidence 9999972 1 100 01111222332 24455677764 222 223344555566665
Q ss_pred HhcCCCCCCcchhHHHHHHHHHhhcCCCch
Q 002044 338 FACFGRSLSECEQLEEIGKKIVGKCKGLPL 367 (976)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 367 (976)
.+. .....+...+.++.....|+|+
T Consensus 143 ~lG-----~lnq~la~~ad~v~~vv~Gip~ 167 (169)
T cd00544 143 ELG-----RLNQRLAALADEVYLVVSGIPL 167 (169)
T ss_pred HHH-----HHHHHHHHHCCEEEEEECCcce
Confidence 542 1234455555556666677775
No 362
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.27 E-value=0.14 Score=52.72 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhcc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
-.+++|.|..|.|||||++.++..
T Consensus 48 Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999863
No 363
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.26 E-value=0.31 Score=55.13 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++.++|++|+||||++..++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999988766
No 364
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.26 E-value=0.64 Score=47.79 Aligned_cols=96 Identities=23% Similarity=0.297 Sum_probs=62.1
Q ss_pred CCccccchhHHHHHHHHHhcccc------cCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-HHHHHH
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSS------EQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SIIEAL 245 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~l 245 (976)
-+++-|-+...+.|.+.+.-+-. +.....+-|.++|++|.||+.||++|+.+.. ..|-. |+. ++...-
T Consensus 132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--STFFS---vSSSDLvSKW 206 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--STFFS---VSSSDLVSKW 206 (439)
T ss_pred hhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--CceEE---eehHHHHHHH
Confidence 35678888888888887653321 1134578899999999999999999998533 23311 111 222222
Q ss_pred hCCCCCcccHHHHHHHHHHHH-cCCceEEEEcCCC
Q 002044 246 EGFAPNLGELNSLLLRIDAFI-ARKKFLLILDDVW 279 (976)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~ 279 (976)
. .+.+.++..+.+.- ..|+-+|++|.|.
T Consensus 207 m------GESEkLVknLFemARe~kPSIIFiDEiD 235 (439)
T KOG0739|consen 207 M------GESEKLVKNLFEMARENKPSIIFIDEID 235 (439)
T ss_pred h------ccHHHHHHHHHHHHHhcCCcEEEeehhh
Confidence 2 23345566665554 3688999999984
No 365
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.26 E-value=0.14 Score=52.50 Aligned_cols=23 Identities=30% Similarity=0.548 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.++.
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~G 51 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILG 51 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999976
No 366
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.24 E-value=0.13 Score=52.90 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||.+.++.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999976
No 367
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.20 E-value=0.24 Score=50.04 Aligned_cols=60 Identities=15% Similarity=0.219 Sum_probs=35.1
Q ss_pred HHHHHcCCceEEEEcCCCCC-CccCcH-hHHHhhcCCC-C-CcEEEEEcCchhhhhccCCcceEec
Q 002044 262 IDAFIARKKFLLILDDVWTD-DYSKWE-PFRRCLINGH-R-ESRILVTTRKETVARMMESTDVIFI 323 (976)
Q Consensus 262 l~~~l~~k~~LlVlDdv~~~-~~~~~~-~l~~~l~~~~-~-gs~iivTtR~~~v~~~~~~~~~~~l 323 (976)
+...+..+.-++++|+.-.. |....+ .+...+.... . |..||++|.+...... ...++.+
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l 195 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRV 195 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEE
Confidence 45566778899999998432 222333 4444443322 2 5568888888766543 2344444
No 368
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.20 E-value=0.11 Score=52.28 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhcc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
-.+++|.|..|.|||||.+.++.-
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999873
No 369
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.19 E-value=0.1 Score=51.95 Aligned_cols=111 Identities=11% Similarity=0.108 Sum_probs=57.4
Q ss_pred EEEEEecCCchHHHHHHHHhcccchhcccccceeehH---HHHHHH----hCC---CCCcccHHHHHHHHHHHHcC--Cc
Q 002044 203 IISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE---SIIEAL----EGF---APNLGELNSLLLRIDAFIAR--KK 270 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~~~l----~~~---~~~~~~~~~~~~~l~~~l~~--k~ 270 (976)
++.|.|..|.||||+.+.+.-. .+-.+-.+.+|... .....+ ... ............++...+.. ++
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~-~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~ 79 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLI-VIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATEN 79 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHH-HHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCC
Confidence 4789999999999999999742 11112111222111 111111 000 11112233334445555554 88
Q ss_pred eEEEEcCCCCC-CccCcHh----HHHhhcCCCCCcEEEEEcCchhhhhcc
Q 002044 271 FLLILDDVWTD-DYSKWEP----FRRCLINGHRESRILVTTRKETVARMM 315 (976)
Q Consensus 271 ~LlVlDdv~~~-~~~~~~~----l~~~l~~~~~gs~iivTtR~~~v~~~~ 315 (976)
-|+++|..-.. +...-.. +...+.. ..+..+|++|...++...+
T Consensus 80 ~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 80 SLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLA 128 (185)
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHh
Confidence 99999998532 1111112 2222222 2367899999988776654
No 370
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.19 E-value=0.12 Score=52.94 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.++.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G 48 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999975
No 371
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=94.18 E-value=0.21 Score=53.10 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.++.
T Consensus 30 Ge~~~IvG~nGsGKSTLl~~L~g 52 (275)
T cd03289 30 GQRVGLLGRTGSGKSTLLSAFLR 52 (275)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 35899999999999999999986
No 372
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.17 E-value=0.048 Score=53.07 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 002044 203 IISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
++.|.|.+|+||||+|..+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~ 24 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ 24 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH
Confidence 5899999999999999998763
No 373
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=94.16 E-value=0.11 Score=53.41 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G 48 (223)
T TIGR03740 26 NSVYGLLGPNGAGKSTLLKMITG 48 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999975
No 374
>PRK03839 putative kinase; Provisional
Probab=94.16 E-value=0.032 Score=55.28 Aligned_cols=22 Identities=36% Similarity=0.685 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 002044 203 IISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
.|.|.|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999983
No 375
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=94.09 E-value=0.17 Score=51.61 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhcc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
-.+++|.|..|.|||||++.++..
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 24 GEIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999763
No 376
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.07 E-value=0.2 Score=52.68 Aligned_cols=26 Identities=31% Similarity=0.334 Sum_probs=23.8
Q ss_pred CCCeEEEEEEecCCchHHHHHHHHhc
Q 002044 198 TNAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 198 ~~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..+..+|.|.|.+|+|||||+..+.+
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~ 126 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLM 126 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999999887
No 377
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.05 E-value=0.19 Score=52.20 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=27.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE 239 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 239 (976)
.-.++.|.|.+|+|||++|.++... ....-..++|++.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~--~~~~ge~~lyvs~ 57 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGIYVAL 57 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEEe
Confidence 5679999999999999999887652 2223455677764
No 378
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.04 E-value=0.15 Score=52.10 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhcc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
-.+++|+|..|.|||||++.++..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999763
No 379
>PRK04040 adenylate kinase; Provisional
Probab=94.04 E-value=0.039 Score=54.79 Aligned_cols=23 Identities=30% Similarity=0.616 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..+|+|+|++|+||||+++.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 380
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.01 E-value=0.056 Score=59.39 Aligned_cols=103 Identities=21% Similarity=0.248 Sum_probs=57.8
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhcccch----hcccccceeehHHHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEE
Q 002044 199 NAVQIISLVGMGGIGKTTLAQFAYNDEDV----ISNFEKRMWNCESIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLI 274 (976)
Q Consensus 199 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlV 274 (976)
...+=+.|||..|.|||.|.-.+|+...+ +-||..-+- ++-+.+..... .......+.+.+.++..||.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~---~vh~~l~~~~~----~~~~l~~va~~l~~~~~lLc 132 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFML---DVHSRLHQLRG----QDDPLPQVADELAKESRLLC 132 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHH---HHHHHHHHHhC----CCccHHHHHHHHHhcCCEEE
Confidence 35678999999999999999999985433 234432110 12222222111 11224455566777888999
Q ss_pred EcCCCCCCccCcHhHHHhhcC-CCCCcEEEEEcCch
Q 002044 275 LDDVWTDDYSKWEPFRRCLIN-GHRESRILVTTRKE 309 (976)
Q Consensus 275 lDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtR~~ 309 (976)
||.+.-.|..+---+...+.. ...|. |||+|.|.
T Consensus 133 fDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 133 FDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNR 167 (362)
T ss_pred EeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCC
Confidence 999854443332223333322 24565 55555544
No 381
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.01 E-value=0.16 Score=52.19 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.++.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999975
No 382
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.00 E-value=0.2 Score=51.41 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
.+++|+|..|.|||||++.++.-
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999763
No 383
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=93.99 E-value=0.14 Score=52.07 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.++.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (208)
T cd03268 26 GEIYGFLGPNGAGKTTTMKIILG 48 (208)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999975
No 384
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=93.99 E-value=0.17 Score=52.42 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.++.
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~i~G 58 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAG 58 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35999999999999999999975
No 385
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.98 E-value=0.2 Score=51.64 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=19.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.++.|.|.+|.||||+|.+++.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~ 46 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAY 46 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45999999999999999866654
No 386
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=93.97 E-value=0.13 Score=54.02 Aligned_cols=39 Identities=23% Similarity=0.171 Sum_probs=27.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcc----cccceeehH
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISN----FEKRMWNCE 239 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~ 239 (976)
-.+.=|+|.+|+|||.|+..++-...+... =..++|++-
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidT 80 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDT 80 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEES
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeC
Confidence 358899999999999999877643222221 124778764
No 387
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.96 E-value=0.041 Score=54.94 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
+.++|+|+|.+|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999986
No 388
>PRK10867 signal recognition particle protein; Provisional
Probab=93.94 E-value=0.16 Score=57.15 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=21.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+|.++|.+|+||||.|..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999998877776
No 389
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.94 E-value=0.21 Score=51.52 Aligned_cols=116 Identities=13% Similarity=0.124 Sum_probs=63.1
Q ss_pred CccccchhHHHHHHHHHhccc-ccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCCCc
Q 002044 174 SEVRGRVEEKNALKSKLLCKS-SEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAPNL 252 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~~~ 252 (976)
..++|..-..+.|+..+.+-- ++...++-|++.+|.+|+||.-.++.++++..-.. - ...+|.- . ......+..
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~G-l-~S~~V~~-f--vat~hFP~~ 156 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGG-L-RSPFVHH-F--VATLHFPHA 156 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhcc-c-cchhHHH-h--hhhccCCCh
Confidence 356776655555555554221 11145778999999999999999999987421110 0 0111110 0 001122333
Q ss_pred ccHHHHHHHHHHH----Hc-CCceEEEEcCCCCCCccCcHhHHHhhc
Q 002044 253 GELNSLLLRIDAF----IA-RKKFLLILDDVWTDDYSKWEPFRRCLI 294 (976)
Q Consensus 253 ~~~~~~~~~l~~~----l~-~k~~LlVlDdv~~~~~~~~~~l~~~l~ 294 (976)
..++.-..+++.+ ++ -+|-|+|+|+|..-...-.+.+...+.
T Consensus 157 ~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 3333333334333 33 479999999996554444555555443
No 390
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=93.93 E-value=0.18 Score=51.02 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||.+.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G 48 (201)
T cd03231 26 GEALQVTGPNGSGKTTLLRILAG 48 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999875
No 391
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.93 E-value=0.068 Score=56.65 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=21.8
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhc
Q 002044 199 NAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 199 ~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
....+|||.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999987754
No 392
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=93.92 E-value=0.17 Score=51.08 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhcc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 26 GEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998763
No 393
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=93.92 E-value=0.2 Score=51.17 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhcc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
-.+++|+|..|.|||||.+.++.-
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999863
No 394
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=0.46 Score=47.31 Aligned_cols=62 Identities=15% Similarity=0.161 Sum_probs=36.6
Q ss_pred HHHHHcCCceEEEEcCCCCC-CccCcHhHHHhhcC-CCCCcEEEEEcCchhhhhccCCcceEec
Q 002044 262 IDAFIARKKFLLILDDVWTD-DYSKWEPFRRCLIN-GHRESRILVTTRKETVARMMESTDVIFI 323 (976)
Q Consensus 262 l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtR~~~v~~~~~~~~~~~l 323 (976)
+.+.+--++-+.|||...+- |.+.+..+...+.. ..+|+-++|.|..+.++.......++-+
T Consensus 155 ilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl 218 (251)
T COG0396 155 ILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVL 218 (251)
T ss_pred HHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEE
Confidence 33444456779999998542 22222223222222 2346778999999999988765554443
No 395
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=93.89 E-value=0.78 Score=43.13 Aligned_cols=83 Identities=14% Similarity=0.251 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHhhhhHhhcCcHHHHHHHHHHHHHHHHHHHHHHhccc-CChhHHHHHHHHHHhhcchhhhh
Q 002044 2 VDAIVSVVLQQLISVAVEETKGGVRLVTGVGTEVKRLQDNLEAIQAVLVDAERRQL-EELPVRLWLEKLKEASYDMEDML 80 (976)
Q Consensus 2 a~~~v~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~-~~~~~~~wl~~l~~~~yd~ed~l 80 (976)
|+.+.+++++.+.+.+...+.+.......++.-+++|..+++.|.-++++.+.... -+..-+.=++++.+...++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 45555555555555444477788888888999999999999999999998877532 23333566788888888899988
Q ss_pred HHHH
Q 002044 81 DEWN 84 (976)
Q Consensus 81 d~~~ 84 (976)
+.|.
T Consensus 83 ~k~s 86 (147)
T PF05659_consen 83 EKCS 86 (147)
T ss_pred HHhc
Confidence 8763
No 396
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.88 E-value=0.17 Score=51.33 Aligned_cols=23 Identities=48% Similarity=0.632 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||.+.++.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G 48 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAG 48 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999976
No 397
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.87 E-value=0.16 Score=51.36 Aligned_cols=27 Identities=41% Similarity=0.468 Sum_probs=22.9
Q ss_pred CCCeEEEEEEecCCchHHHHHHHHhcc
Q 002044 198 TNAVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 198 ~~~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
.+...+|.++||+|.||||..+.++..
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHH
Confidence 345678899999999999999998873
No 398
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=93.87 E-value=0.17 Score=52.64 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.++.
T Consensus 47 Ge~~~i~G~NGsGKSTLl~~i~G 69 (236)
T cd03267 47 GEIVGFIGPNGAGKTTTLKILSG 69 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999975
No 399
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.87 E-value=0.076 Score=48.85 Aligned_cols=40 Identities=23% Similarity=0.181 Sum_probs=28.0
Q ss_pred hHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcc
Q 002044 181 EEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 181 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
++..++-+.|...- ..-.+|.+.|.-|.||||+++.+++.
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34444545444221 13458999999999999999999874
No 400
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=93.85 E-value=0.26 Score=50.67 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=21.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.-.+++|+|..|.|||||++.++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhC
Confidence 346999999999999999999875
No 401
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.85 E-value=0.066 Score=55.36 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=23.0
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhc
Q 002044 199 NAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 199 ~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
....+|+|.|..|.|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999887
No 402
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.83 E-value=0.18 Score=50.59 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhcc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
-.+++|+|..|.|||||++.++..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999999763
No 403
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.77 E-value=0.18 Score=54.09 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.++.
T Consensus 33 Ge~~~I~G~nGaGKSTLl~~l~G 55 (282)
T PRK13640 33 GSWTALIGHNGSGKSTISKLING 55 (282)
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999986
No 404
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=93.77 E-value=0.15 Score=53.62 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.++.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G 49 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAG 49 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999975
No 405
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.77 E-value=0.16 Score=57.76 Aligned_cols=24 Identities=38% Similarity=0.364 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+|+|+|.+|+||||++..++.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999988876
No 406
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.77 E-value=0.042 Score=53.88 Aligned_cols=24 Identities=42% Similarity=0.512 Sum_probs=22.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhcc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
..+|+|-||=|+||||||+.+.+.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999984
No 407
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.77 E-value=0.15 Score=54.35 Aligned_cols=24 Identities=38% Similarity=0.404 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..++++|+|.+|+||||++..++.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999988876
No 408
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.76 E-value=0.25 Score=54.76 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..++|.++|..|+||||.+..++.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~ 196 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999988876
No 409
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.76 E-value=0.28 Score=49.53 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhcc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
-.+++|+|..|.|||||++.+..-
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 459999999999999999999763
No 410
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.76 E-value=0.19 Score=52.24 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.++.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCING 53 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999965
No 411
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.75 E-value=0.31 Score=51.99 Aligned_cols=38 Identities=21% Similarity=0.052 Sum_probs=27.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE 239 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 239 (976)
-.++.|.|.+|+||||++.+++... ...+=..++|++.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~-~~~~g~~vl~iS~ 67 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDL-ITQHGVRVGTISL 67 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH-HHhcCceEEEEEc
Confidence 4588899999999999999887632 1221345777776
No 412
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=93.74 E-value=0.2 Score=54.28 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||.+.+..
T Consensus 19 Ge~~~l~G~NGaGKSTLl~~l~G 41 (302)
T TIGR01188 19 GEVFGFLGPNGAGKTTTIRMLTT 41 (302)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999975
No 413
>PRK14974 cell division protein FtsY; Provisional
Probab=93.72 E-value=0.18 Score=54.65 Aligned_cols=24 Identities=33% Similarity=0.374 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
+..+|.++|++|+||||++..++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999998887776
No 414
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.72 E-value=0.028 Score=33.57 Aligned_cols=21 Identities=29% Similarity=0.642 Sum_probs=13.1
Q ss_pred CccEEecCCCCCCcccchhhcc
Q 002044 631 NLQTLNMCGSPGLKRLPQGIGK 652 (976)
Q Consensus 631 ~L~~L~l~~~~~l~~lp~~i~~ 652 (976)
+|++||+++|. ++.+|.++++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 46677777774 6666665543
No 415
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.71 E-value=0.21 Score=51.35 Aligned_cols=113 Identities=17% Similarity=0.146 Sum_probs=62.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeeh--------H--------HHHHHHhCC------CC-CcccHHH
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNC--------E--------SIIEALEGF------AP-NLGELNS 257 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~--------~--------~~~~~l~~~------~~-~~~~~~~ 257 (976)
-.+++|||..|.||||+++.+..= .... .+.++.. . ++++.+... .+ ....-+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L--~~pt-~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGL--EEPT-SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcC--cCCC-CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 458999999999999999999862 2211 2222221 1 222222211 11 1122233
Q ss_pred HHHHHHHHHcCCceEEEEcCCCCCCccCc-HhHHHhhcC--CCCCcEEEEEcCchhhhhccC
Q 002044 258 LLLRIDAFIARKKFLLILDDVWTDDYSKW-EPFRRCLIN--GHRESRILVTTRKETVARMME 316 (976)
Q Consensus 258 ~~~~l~~~l~~k~~LlVlDdv~~~~~~~~-~~l~~~l~~--~~~gs~iivTtR~~~v~~~~~ 316 (976)
..-.+.+.|.-++-++|.|..-+.-.... ..+...+.+ ...|-..+..|.+-.+...+.
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc
Confidence 33457778888999999998743211111 222222222 234567888888877777653
No 416
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.70 E-value=0.36 Score=47.36 Aligned_cols=21 Identities=48% Similarity=0.580 Sum_probs=19.3
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
++.++|++|+||||++..++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999988876
No 417
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.69 E-value=0.15 Score=49.91 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 002044 203 IISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999984
No 418
>PRK05439 pantothenate kinase; Provisional
Probab=93.69 E-value=0.081 Score=56.47 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=23.1
Q ss_pred CCCeEEEEEEecCCchHHHHHHHHhc
Q 002044 198 TNAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 198 ~~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.....+|+|.|.+|+||||+|+.+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 44678999999999999999998876
No 419
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.68 E-value=0.14 Score=51.47 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.6
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhc
Q 002044 199 NAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 199 ~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
....+|+|+|++|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999987
No 420
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=93.67 E-value=0.19 Score=52.74 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.++.
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~G 52 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLG 52 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999986
No 421
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.64 E-value=0.11 Score=51.60 Aligned_cols=42 Identities=33% Similarity=0.381 Sum_probs=31.8
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhc
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|.+..+..+.-... +..=|.++|.+|+|||++|+.+..
T Consensus 3 ~dI~GQe~aKrAL~iAAa--------G~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAA--------GGHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHH--------CC--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHc--------CCCCeEEECCCCCCHHHHHHHHHH
Confidence 578999888887776655 234688999999999999999864
No 422
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.63 E-value=0.15 Score=52.99 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhcc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
-.+++|+|..|.|||||.+.++..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 26 GEFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999764
No 423
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.62 E-value=0.12 Score=49.12 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
+|.|+|.+|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 424
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.62 E-value=0.11 Score=46.76 Aligned_cols=50 Identities=12% Similarity=0.197 Sum_probs=33.7
Q ss_pred ccccchhHHHHHHHHHhcccc-cCCCCeEEEEEEecCCchHHHHHHHHhcc
Q 002044 175 EVRGRVEEKNALKSKLLCKSS-EQTNAVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
.++|..-..+.+.+.+.+--. .....+-|++.+|.+|+|||.+++.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 566766555555544432111 11456789999999999999999888763
No 425
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.62 E-value=0.19 Score=53.48 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||.+.++.
T Consensus 35 Ge~~~I~G~nGsGKSTLl~~i~G 57 (269)
T PRK13648 35 GQWTSIVGHNGSGKSTIAKLMIG 57 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999975
No 426
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.60 E-value=0.055 Score=50.59 Aligned_cols=23 Identities=30% Similarity=0.651 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.++|.|+|.+|+||||+.+.+-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 68999999999999999988876
No 427
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=2 Score=50.28 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=60.5
Q ss_pred cccCCccccchhHHHHHHHHHhcccccC------CCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH---H
Q 002044 170 LIDLSEVRGRVEEKNALKSKLLCKSSEQ------TNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE---S 240 (976)
Q Consensus 170 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~ 240 (976)
.+.-.++=|-++-+.+|.+-+.-+-.+. -....=|.++|++|.|||-||++|+.+ .. ..|+++ +
T Consensus 668 nV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATE--cs-----L~FlSVKGPE 740 (953)
T KOG0736|consen 668 NVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATE--CS-----LNFLSVKGPE 740 (953)
T ss_pred ccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhh--ce-----eeEEeecCHH
Confidence 3344567788888888888776533221 112346789999999999999999983 22 223444 3
Q ss_pred HHHHHhCCCCCcccHHHHH-HHHHHHHcCCceEEEEcCCCC
Q 002044 241 IIEALEGFAPNLGELNSLL-LRIDAFIARKKFLLILDDVWT 280 (976)
Q Consensus 241 ~~~~l~~~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~ 280 (976)
++...-+ +.++-. +.+.+.-..+++.|++|.+.+
T Consensus 741 LLNMYVG------qSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 741 LLNMYVG------QSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HHHHHhc------chHHHHHHHHHHhhccCCeEEEeccccc
Confidence 3332222 122223 333344456899999999954
No 428
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.59 E-value=0.33 Score=53.73 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...++.++|.+|+||||++..++.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999886
No 429
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=93.56 E-value=0.13 Score=60.10 Aligned_cols=48 Identities=19% Similarity=0.251 Sum_probs=39.0
Q ss_pred CCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcc
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
...++|+...+.++.+.+..... .-.-|.|.|..|+|||++|+.+++.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHh
Confidence 45799999999888888875442 3346789999999999999999874
No 430
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.54 E-value=0.042 Score=54.16 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
+|+|.|.+|+||||+|+.+..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~ 21 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQR 21 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 431
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.48 E-value=0.22 Score=55.62 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+|.++|.+|+||||+|..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988876
No 432
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.46 E-value=0.64 Score=47.48 Aligned_cols=229 Identities=15% Similarity=0.124 Sum_probs=115.9
Q ss_pred ccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcc----cchhcccccceeehH-------HHHH
Q 002044 175 EVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYND----EDVISNFEKRMWNCE-------SIIE 243 (976)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~----~~~~~~f~~~~wv~~-------~~~~ 243 (976)
.+.++++....+..... .++.+-..++|+.|.||-|.+..+.+. .-.+-+-+...|.+. ..+.
T Consensus 14 ~l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvs 87 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVS 87 (351)
T ss_pred hcccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEec
Confidence 36677777777776654 335777899999999999988666552 111112233444332 0000
Q ss_pred H---HhCCCCCc--ccHHHHHHHHHHH-------HcC-Cce-EEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCch
Q 002044 244 A---LEGFAPNL--GELNSLLLRIDAF-------IAR-KKF-LLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKE 309 (976)
Q Consensus 244 ~---l~~~~~~~--~~~~~~~~~l~~~-------l~~-k~~-LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 309 (976)
+ +.-...+. .|---.++.+++. ..+ +.| ++|+-.+.+-..+.-..+++....-...+|+|+...+.
T Consensus 88 S~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~ 167 (351)
T KOG2035|consen 88 SNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNST 167 (351)
T ss_pred ccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCc
Confidence 0 00001111 1111112222221 112 344 55555553222222233554444444557887765432
Q ss_pred -hhhhcc-CCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCc-hHHHHHhhhhccC-------
Q 002044 310 -TVARMM-ESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLP-LAAKTIGSLLRFK------- 379 (976)
Q Consensus 310 -~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~~~l~~~------- 379 (976)
.+...+ ...-.+++...+++|-...+++.+-..+- ..+ .+++.+|+++++|.- -||-++- .++.+
T Consensus 168 SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l-~lp---~~~l~rIa~kS~~nLRrAllmlE-~~~~~n~~~~a~ 242 (351)
T KOG2035|consen 168 SRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL-QLP---KELLKRIAEKSNRNLRRALLMLE-AVRVNNEPFTAN 242 (351)
T ss_pred ccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc-cCc---HHHHHHHHHHhcccHHHHHHHHH-HHHhcccccccc
Confidence 222222 23457889999999999999887743322 112 778899999999864 3333322 11111
Q ss_pred ---CCHHHHHHHHhhhhhhhh--hhhhhhhHHHHhhhcCC
Q 002044 380 ---RTREEWQSILDSEIWQLE--EFEKGLLAPLLLSYNDL 414 (976)
Q Consensus 380 ---~~~~~w~~~l~~~~~~~~--~~~~~~~~~l~~sy~~L 414 (976)
-..-+|+-...+.....- +..+.+..+-..-|+-|
T Consensus 243 ~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 243 SQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred CCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 124578877665332221 12234444444445433
No 433
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.46 E-value=0.73 Score=46.28 Aligned_cols=173 Identities=14% Similarity=0.150 Sum_probs=88.4
Q ss_pred CccccchhHHHHHHHHHhccccc-------CCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHh
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSE-------QTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALE 246 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~ 246 (976)
+++=|-+..++++++.+.-+-.+ +-..++-|..+|++|.|||-+|++.+. +....|-..+- -.+.+.+-
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAa--qT~aTFLKLAg--PQLVQMfI 246 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAA--QTNATFLKLAG--PQLVQMFI 246 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHH--hccchHHHhcc--hHHHhhhh
Confidence 46778999999999887644322 123467788999999999999999887 44444421110 01111111
Q ss_pred CCCCCcccHHHHHHHHHHHHc-CCceEEEEcCCCCC-----Cc---cC------cHhHHHhhcCCC--CCcEEEEEcCch
Q 002044 247 GFAPNLGELNSLLLRIDAFIA-RKKFLLILDDVWTD-----DY---SK------WEPFRRCLINGH--RESRILVTTRKE 309 (976)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~-----~~---~~------~~~l~~~l~~~~--~gs~iivTtR~~ 309 (976)
.+-..+.......-+ ..+.+|++|.+.-. +. .+ .-.+...+..+. ..-|||..|..-
T Consensus 247 ------GdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRv 320 (424)
T KOG0652|consen 247 ------GDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRV 320 (424)
T ss_pred ------cchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccc
Confidence 112222333233333 45789999987321 00 00 111223333322 345778777655
Q ss_pred hhhhc--c--CC-cceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHH
Q 002044 310 TVARM--M--ES-TDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKK 357 (976)
Q Consensus 310 ~v~~~--~--~~-~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~ 357 (976)
++... + +. ...++. |++.+++..-..+.....-+..++-+++++++.
T Consensus 321 DiLDPALlRSGRLDRKIEf-P~Pne~aRarIlQIHsRKMnv~~DvNfeELaRs 372 (424)
T KOG0652|consen 321 DILDPALLRSGRLDRKIEF-PHPNEEARARILQIHSRKMNVSDDVNFEELARS 372 (424)
T ss_pred cccCHHHhhcccccccccC-CCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhc
Confidence 44332 1 11 334444 445555554333332223334455566775543
No 434
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.44 E-value=0.23 Score=50.79 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhcc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
-.+++|+|..|.|||||++.++..
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 358999999999999999999763
No 435
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=93.42 E-value=0.22 Score=51.82 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||.+.++.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G 48 (237)
T TIGR00968 26 GSLVALLGPSGSGKSTLLRIIAG 48 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45999999999999999999975
No 436
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.42 E-value=0.045 Score=55.22 Aligned_cols=21 Identities=43% Similarity=0.569 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
+|+|.|.+|+||||+|+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 437
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=93.41 E-value=0.37 Score=59.23 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=20.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-..|+|+|..|.|||||++.+..
T Consensus 500 G~~vaIvG~SGsGKSTLlklL~g 522 (708)
T TIGR01193 500 NSKTTIVGMSGSGKSTLAKLLVG 522 (708)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999964
No 438
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.40 E-value=0.044 Score=56.04 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
+|+|.|..|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999887
No 439
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.40 E-value=0.086 Score=50.20 Aligned_cols=35 Identities=29% Similarity=0.419 Sum_probs=29.3
Q ss_pred hHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcc
Q 002044 181 EEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 181 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
+.++++.+.+. + ++++++|..|+|||||++.+..+
T Consensus 24 ~g~~~l~~~l~--------~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLK--------G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHT--------T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhc--------C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 45677777774 3 68999999999999999999885
No 440
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=93.40 E-value=0.25 Score=51.58 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.+..
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G 49 (240)
T PRK09493 27 GEVVVIIGPSGSGKSTLLRCINK 49 (240)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999975
No 441
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=93.40 E-value=0.36 Score=48.65 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=20.4
Q ss_pred eEEEEEEecCCchHHHHHHHHh
Q 002044 201 VQIISLVGMGGIGKTTLAQFAY 222 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~ 222 (976)
-++++|.|+.|.|||||.+.+.
T Consensus 28 ~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 28 KRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 3799999999999999999987
No 442
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.40 E-value=0.24 Score=52.93 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.++.
T Consensus 33 Ge~~~i~G~nGaGKSTLl~~i~G 55 (279)
T PRK13635 33 GEWVAIVGHNGSGKSTLAKLLNG 55 (279)
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999975
No 443
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.40 E-value=0.063 Score=50.00 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=20.3
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 002044 203 IISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
+|.|.|.+|.||||+|+.+++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~ 23 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH 23 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH
Confidence 6899999999999999999883
No 444
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.38 E-value=0.3 Score=55.03 Aligned_cols=24 Identities=46% Similarity=0.451 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+|.++|.+|+||||.|..++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~ 117 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR 117 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999999886
No 445
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.37 E-value=0.25 Score=50.37 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||.+.+..
T Consensus 24 Ge~~~l~G~nGsGKSTLl~~l~g 46 (211)
T cd03298 24 GEITAIVGPSGSGKSTLLNLIAG 46 (211)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999976
No 446
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.36 E-value=0.056 Score=53.49 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhcc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
.+++|+|+.|+||||+++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998773
No 447
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=93.35 E-value=0.27 Score=51.03 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.++.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G 47 (232)
T PRK10771 25 GERVAILGPSGAGKSTLLNLIAG 47 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999965
No 448
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=93.34 E-value=0.23 Score=51.46 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||.+.++.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G 48 (232)
T cd03218 26 GEIVGLLGPNGAGKTTTFYMIVG 48 (232)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999975
No 449
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=93.34 E-value=0.24 Score=59.39 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-..++|+|..|.|||||++.+..
T Consensus 361 G~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999865
No 450
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=93.32 E-value=0.26 Score=51.87 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.+..
T Consensus 38 Ge~~~I~G~NGsGKSTLlk~l~G 60 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAG 60 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999975
No 451
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.30 E-value=1.3 Score=47.78 Aligned_cols=49 Identities=22% Similarity=0.198 Sum_probs=32.5
Q ss_pred eEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHH
Q 002044 320 VIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAA 369 (976)
Q Consensus 320 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 369 (976)
++++++++.+|+..++.-.+-.+-- ......+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l-~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWL-RSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcc-ccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999877632221 111233445566777778888543
No 452
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.26 E-value=0.058 Score=53.12 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...|.|+|++|+||||+|+.++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999988
No 453
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.26 E-value=0.15 Score=56.09 Aligned_cols=105 Identities=15% Similarity=0.104 Sum_probs=59.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCC------CCC-cccHHHHHHHHHHHHcCCceEE
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGF------APN-LGELNSLLLRIDAFIARKKFLL 273 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~------~~~-~~~~~~~~~~l~~~l~~k~~Ll 273 (976)
-..|.|.|..|.||||+.+.+.+ .+..+....++...+..+..... ..+ ..........++..|+..+=.|
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i 199 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVI 199 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEE
Confidence 35899999999999999998876 34334444555433222211110 000 1112234566777888899999
Q ss_pred EEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCchhhh
Q 002044 274 ILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKETVA 312 (976)
Q Consensus 274 VlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 312 (976)
++|.+. +...+...... ...|-.|+.|....++.
T Consensus 200 ~vgEir--d~~~~~~~l~a---a~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 200 LIGEMR--DLETVELALTA---AETGHLVFGTLHTNSAA 233 (343)
T ss_pred EEeCCC--CHHHHHHHHHH---HHcCCcEEEEEcCCCHH
Confidence 999994 33444432222 23344466665544443
No 454
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=93.24 E-value=0.42 Score=49.34 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.++.
T Consensus 40 Ge~~~i~G~nGsGKSTLl~~l~G 62 (226)
T cd03248 40 GEVTALVGPSGSGKSTVVALLEN 62 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999975
No 455
>PRK13947 shikimate kinase; Provisional
Probab=93.24 E-value=0.056 Score=53.07 Aligned_cols=21 Identities=38% Similarity=0.506 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 388999999999999999988
No 456
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.24 E-value=0.083 Score=51.14 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..++++|+|..|+|||||++.+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 567999999999999999999986
No 457
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.17 E-value=0.31 Score=58.16 Aligned_cols=24 Identities=38% Similarity=0.508 Sum_probs=21.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.-..++|+|..|.|||||++.+..
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g 388 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTR 388 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999975
No 458
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.17 E-value=0.34 Score=52.80 Aligned_cols=38 Identities=26% Similarity=0.246 Sum_probs=27.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE 239 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 239 (976)
+.++++++|+.|+||||++..++.. ....-..+.+++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lIta 242 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITT 242 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeC
Confidence 5689999999999999999888763 3222233555554
No 459
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=93.17 E-value=0.27 Score=53.26 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|.|..|.|||||.+.++.
T Consensus 33 Gei~gllGpNGaGKSTLl~~l~G 55 (306)
T PRK13537 33 GECFGLLGPNGAGKTTTLRMLLG 55 (306)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999976
No 460
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.17 E-value=0.23 Score=52.89 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (274)
T PRK13647 31 GSKTALLGPNGAGKSTLLLHLNG 53 (274)
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35999999999999999999975
No 461
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=93.17 E-value=0.64 Score=44.81 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.7
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..+.|.|..|+|||||.+.++-
T Consensus 29 e~~~i~G~NG~GKTtLLRilaG 50 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAG 50 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHc
Confidence 4788999999999999999964
No 462
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.13 E-value=0.28 Score=52.20 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||.+.++.
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~G 57 (271)
T PRK13632 35 GEYVAILGHNGSGKSTISKILTG 57 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999875
No 463
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.13 E-value=0.053 Score=53.90 Aligned_cols=21 Identities=24% Similarity=0.301 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
||.|+|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 464
>PTZ00494 tuzin-like protein; Provisional
Probab=93.13 E-value=6.4 Score=43.50 Aligned_cols=158 Identities=15% Similarity=0.133 Sum_probs=95.5
Q ss_pred ccCCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH--------HHH
Q 002044 171 IDLSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE--------SII 242 (976)
Q Consensus 171 ~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--------~~~ 242 (976)
.....+|.|+.+-..+.+.|...+ ...++++.+.|.-|.||++|.+.....+.. ..++|.+ ++.
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~EDtLrsVV 439 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGTEDTLRSVV 439 (664)
T ss_pred cccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCCcchHHHHH
Confidence 345678999998888888887554 347899999999999999999887764332 2455555 444
Q ss_pred HHHhCCCCCc-cc----HHHHHHHHHHHHcCCceEEEEcCCCCCCccCcHhH---HHhhcCCCCCcEEEEEcCchhhhhc
Q 002044 243 EALEGFAPNL-GE----LNSLLLRIDAFIARKKFLLILDDVWTDDYSKWEPF---RRCLINGHRESRILVTTRKETVARM 314 (976)
Q Consensus 243 ~~l~~~~~~~-~~----~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l---~~~l~~~~~gs~iivTtR~~~v~~~ 314 (976)
..+.-...+. .+ +.+...+-.....++.-+||+-==.. ..+..+ ...|.....-++|++--=.+.+...
T Consensus 440 KALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREG---ssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~ 516 (664)
T PTZ00494 440 RALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREG---SDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPL 516 (664)
T ss_pred HHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccC---CcHHHHHHHHHHHHccchhheeeeechHhhhchh
Confidence 4444322221 11 22223333334556666676642211 112111 1223344455778877655544332
Q ss_pred c---CCcceEecCCCCHHHHHHHHHHHh
Q 002044 315 M---ESTDVIFIKELSEQECWALFKRFA 339 (976)
Q Consensus 315 ~---~~~~~~~l~~L~~~~~~~Lf~~~~ 339 (976)
. ..-..|.+.+++.++|.++-.+..
T Consensus 517 n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 517 NVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hccCccceeEecCCcCHHHHHHHHhccc
Confidence 1 234689999999999998887654
No 465
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.10 E-value=0.0022 Score=64.49 Aligned_cols=66 Identities=26% Similarity=0.189 Sum_probs=50.5
Q ss_pred CCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCC--CCCCCCCCCCCCcceeeccccccceEeC
Q 002044 770 QPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDK--CEVMPALGILPSLEVLKIRFMKSVKRVG 837 (976)
Q Consensus 770 ~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~--~~~l~~l~~L~~L~~L~L~~~~~l~~~~ 837 (976)
..++.|+.|.|+-|++.++ ..+..|++|+.|+|..|.. +..+.-|.+||+|+.|+|..|+.....|
T Consensus 38 ~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAG 105 (388)
T ss_pred HhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccc
Confidence 4567899999999998876 4467899999999988742 2234457899999999999887554443
No 466
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.10 E-value=0.062 Score=52.95 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999873
No 467
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=93.05 E-value=0.22 Score=53.55 Aligned_cols=149 Identities=15% Similarity=0.215 Sum_probs=78.2
Q ss_pred cCCccccchhHHHHHHHHHhccccc-----------CCCCeEEEEEEecCCchHHHHHHHHhcccchhc--ccc---cce
Q 002044 172 DLSEVRGRVEEKNALKSKLLCKSSE-----------QTNAVQIISLVGMGGIGKTTLAQFAYNDEDVIS--NFE---KRM 235 (976)
Q Consensus 172 ~~~~~~Gr~~~~~~l~~~L~~~~~~-----------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~f~---~~~ 235 (976)
..-+..|-..+...|.+.+-..... ....--+++|+|.+|+||||+.+++........ .|. +.+
T Consensus 369 S~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v 448 (593)
T COG2401 369 SELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKV 448 (593)
T ss_pred eeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCce
Confidence 3344556666777776665321110 012335899999999999999999865211100 010 000
Q ss_pred ee------------------hHHHHHHHhCCCCCc-------------------------ccHHHHHHHHHHHHcCCceE
Q 002044 236 WN------------------CESIIEALEGFAPNL-------------------------GELNSLLLRIDAFIARKKFL 272 (976)
Q Consensus 236 wv------------------~~~~~~~l~~~~~~~-------------------------~~~~~~~~~l~~~l~~k~~L 272 (976)
=+ .+.+++++.....+. .+-..-..+|.+.+.++.-+
T Consensus 449 ~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~ 528 (593)
T COG2401 449 EVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNV 528 (593)
T ss_pred eccccchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCc
Confidence 00 114445544332221 11122334577778888889
Q ss_pred EEEcCCCCC-CccCcHhHHHhhcCC--CCCcEEEEEcCchhhhhccCCcce
Q 002044 273 LILDDVWTD-DYSKWEPFRRCLING--HRESRILVTTRKETVARMMESTDV 320 (976)
Q Consensus 273 lVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtR~~~v~~~~~~~~~ 320 (976)
++.|....- |......+...+..- ..|+-+++.|+..++.+.......
T Consensus 529 ~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~l 579 (593)
T COG2401 529 LLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTL 579 (593)
T ss_pred EEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCcee
Confidence 999987321 111111223333322 356777777777778777655433
No 468
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.05 E-value=0.29 Score=52.30 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.++.
T Consensus 33 Ge~~~I~G~nGsGKSTLl~~l~G 55 (277)
T PRK13642 33 GEWVSIIGQNGSGKSTTARLIDG 55 (277)
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999974
No 469
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=93.05 E-value=0.43 Score=51.21 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.++++.|..|.|||||.+.+..
T Consensus 31 Gei~gllG~NGAGKTTllk~l~g 53 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAG 53 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 36999999999999999999976
No 470
>PRK04328 hypothetical protein; Provisional
Probab=93.04 E-value=0.26 Score=51.63 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=27.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE 239 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 239 (976)
.-.++.|.|.+|.|||+||.++... ....-..++|++.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ 59 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVAL 59 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEe
Confidence 4578999999999999999887653 2223345667654
No 471
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.03 E-value=0.24 Score=53.56 Aligned_cols=36 Identities=25% Similarity=0.234 Sum_probs=30.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE 239 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 239 (976)
-.+|.|-|-+|||||||..+++. +....- .+.||+.
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsG 128 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSG 128 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeC
Confidence 46899999999999999999998 455444 7888886
No 472
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.03 E-value=0.06 Score=51.48 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 002044 203 IISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
++.|.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999874
No 473
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=93.00 E-value=1.6 Score=43.61 Aligned_cols=188 Identities=14% Similarity=0.118 Sum_probs=94.5
Q ss_pred cccc-chhHHHHHHHHHhccccc-------CCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-HHHHHH
Q 002044 175 EVRG-RVEEKNALKSKLLCKSSE-------QTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SIIEAL 245 (976)
Q Consensus 175 ~~~G-r~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~l 245 (976)
+++| -+..+++|.+.+.-+..+ +-.+++-|.++|++|.|||-||+.|++.. ...| +-|+. .+.+..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--~c~f---irvsgselvqk~ 221 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTF---IRVSGSELVQKY 221 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--ceEE---EEechHHHHHHH
Confidence 4565 477777777766544322 12356778999999999999999999831 1111 12222 233332
Q ss_pred hCCCCCcccHHHHHHHHHHHH-cCCceEEEEcCCCCCCc----------cCc----HhHHHhhcCC--CCCcEEEEEcCc
Q 002044 246 EGFAPNLGELNSLLLRIDAFI-ARKKFLLILDDVWTDDY----------SKW----EPFRRCLING--HRESRILVTTRK 308 (976)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~----------~~~----~~l~~~l~~~--~~gs~iivTtR~ 308 (976)
-+.. ......+.-.- ..-+.+|+.|.+.+... .+. -++...+..+ .+.-+||+.|..
T Consensus 222 igeg------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnr 295 (404)
T KOG0728|consen 222 IGEG------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNR 295 (404)
T ss_pred hhhh------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccc
Confidence 2211 11111111111 23577889998854110 111 1122223222 345688888875
Q ss_pred hhhhhcc-----CCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHHhh
Q 002044 309 ETVARMM-----ESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTIGS 374 (976)
Q Consensus 309 ~~v~~~~-----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 374 (976)
-++.... .....++..+-+++.-.++++-+.-. -+-...-++..+|+++....|.--.+..+=|+
T Consensus 296 idild~allrpgridrkiefp~p~e~ar~~ilkihsrk-mnl~rgi~l~kiaekm~gasgaevk~vcteag 365 (404)
T KOG0728|consen 296 IDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRK-MNLTRGINLRKIAEKMPGASGAEVKGVCTEAG 365 (404)
T ss_pred cccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhh-hchhcccCHHHHHHhCCCCccchhhhhhhhhh
Confidence 5443321 22456777777777767777644311 11112234566555554433333333333333
No 474
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.97 E-value=0.44 Score=49.17 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|+.|+|||||.+.++.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46999999999999999999976
No 475
>PRK06217 hypothetical protein; Validated
Probab=92.97 E-value=0.064 Score=53.28 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 002044 203 IISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
.|.|.|.+|+||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 476
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.96 E-value=0.061 Score=53.07 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
+|+|.|.+|+||||+|+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 477
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.95 E-value=0.26 Score=57.09 Aligned_cols=38 Identities=26% Similarity=0.247 Sum_probs=28.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE 239 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 239 (976)
.-.++.|.|.+|+|||||+.++... ...+-..++++..
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~ 299 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAY 299 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEe
Confidence 4579999999999999999988873 3333345666654
No 478
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=92.94 E-value=0.41 Score=57.43 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-..++|+|..|.|||||++.+..
T Consensus 369 G~~~aIvG~sGsGKSTLl~ll~g 391 (582)
T PRK11176 369 GKTVALVGRSGSGKSTIANLLTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35799999999999999999965
No 479
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=92.92 E-value=0.24 Score=60.71 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-..|+|+|..|.|||||++.+..
T Consensus 491 G~~iaIvG~sGsGKSTLlklL~g 513 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLG 513 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999865
No 480
>CHL00206 ycf2 Ycf2; Provisional
Probab=92.90 E-value=1.4 Score=57.33 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=22.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
..+-|.++|++|.|||.||++++.+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHh
Confidence 4567889999999999999999985
No 481
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.86 E-value=0.25 Score=52.02 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=27.1
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE 239 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 239 (976)
.-.++.|.|.+|+|||++|.+++.. ....=..++|++.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~--~a~~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVT--QASRGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEe
Confidence 4579999999999999999987652 2222235666654
No 482
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.86 E-value=0.21 Score=55.27 Aligned_cols=38 Identities=24% Similarity=0.218 Sum_probs=28.3
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE 239 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 239 (976)
.-.++.|.|.+|+|||||+.+++.. ....-..++|++.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~ 118 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSG 118 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEC
Confidence 3469999999999999999998863 3333345667654
No 483
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.83 E-value=0.68 Score=46.87 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhcc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
-.+++|.|..|.|||||++.++.-
T Consensus 31 G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 458999999999999999999763
No 484
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.83 E-value=0.076 Score=52.61 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
++|+|+|+.|+||||||+.++.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999988
No 485
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=92.82 E-value=0.41 Score=49.78 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||.+.+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T PRK11614 31 GEIVTLIGANGAGKTTLLGTLCG 53 (237)
T ss_pred CcEEEEECCCCCCHHHHHHHHcC
Confidence 35899999999999999999975
No 486
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.80 E-value=0.36 Score=51.45 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||.+.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (274)
T PRK13644 28 GEYIGIIGKNGSGKSTLALHLNG 50 (274)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999975
No 487
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=92.80 E-value=0.43 Score=57.17 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-..|+|+|..|.|||||++.+..
T Consensus 358 G~~v~IvG~sGsGKSTLl~lL~g 380 (571)
T TIGR02203 358 GETVALVGRSGSGKSTLVNLIPR 380 (571)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45889999999999999999864
No 488
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.80 E-value=0.31 Score=57.71 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=21.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.-..++|+|..|.|||||++.+..
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999965
No 489
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.79 E-value=0.086 Score=49.46 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
++|.|+|..|+|||||++.+.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999998
No 490
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=92.78 E-value=0.29 Score=51.37 Aligned_cols=39 Identities=23% Similarity=0.100 Sum_probs=30.3
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH
Q 002044 199 NAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE 239 (976)
Q Consensus 199 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 239 (976)
+.-+++=|+|+.|.||||+|.+++-. .+..-..++|++.
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDt 96 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDT 96 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeC
Confidence 46689999999999999999888763 3344446788865
No 491
>PRK13949 shikimate kinase; Provisional
Probab=92.75 E-value=0.073 Score=51.91 Aligned_cols=21 Identities=48% Similarity=0.482 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-|.|+|++|+||||+++.+++
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999987
No 492
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=92.75 E-value=0.35 Score=51.06 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhcc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
-.+++|+|..|.|||||++.++..
T Consensus 50 Ge~~~liG~NGsGKSTLlk~L~Gl 73 (264)
T PRK13546 50 GDVIGLVGINGSGKSTLSNIIGGS 73 (264)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 493
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.75 E-value=0.26 Score=49.78 Aligned_cols=110 Identities=14% Similarity=0.200 Sum_probs=55.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-----HHHHHH----hCC---CCCcccHHHHHHHHHHHH--c
Q 002044 202 QIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-----SIIEAL----EGF---APNLGELNSLLLRIDAFI--A 267 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-----~~~~~l----~~~---~~~~~~~~~~~~~l~~~l--~ 267 (976)
.+++|.|..|.||||+.+.+.... +..+.. .|+.. ....++ ... .............+...+ .
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~-~~~~~g--~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~ 106 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAV-LLAQIG--CFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLA 106 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHH-HHHHcC--CCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHhc
Confidence 689999999999999999998421 111111 11111 000000 000 011112222222333333 3
Q ss_pred CCceEEEEcCCCCC-CccCcHhH----HHhhcCCCCCcEEEEEcCchhhhhccC
Q 002044 268 RKKFLLILDDVWTD-DYSKWEPF----RRCLINGHRESRILVTTRKETVARMME 316 (976)
Q Consensus 268 ~k~~LlVlDdv~~~-~~~~~~~l----~~~l~~~~~gs~iivTtR~~~v~~~~~ 316 (976)
..+-++++|..-.. +...-..+ ...+. ..+..+|++|.+..+...+.
T Consensus 107 ~~~~llllDEp~~gld~~~~~~l~~~ll~~l~--~~~~~vi~~tH~~~~~~~~~ 158 (202)
T cd03243 107 TPRSLVLIDELGRGTSTAEGLAIAYAVLEHLL--EKGCRTLFATHFHELADLPE 158 (202)
T ss_pred cCCeEEEEecCCCCCCHHHHHHHHHHHHHHHH--hcCCeEEEECChHHHHHHhh
Confidence 57899999998432 11111112 22222 23677999999887776543
No 494
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=92.74 E-value=0.33 Score=51.90 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||.+.++.
T Consensus 36 Ge~~~l~G~nGsGKSTLl~~l~G 58 (280)
T PRK13633 36 GEFLVILGRNGSGKSTIAKHMNA 58 (280)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999975
No 495
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=92.72 E-value=0.12 Score=56.82 Aligned_cols=51 Identities=20% Similarity=0.254 Sum_probs=36.6
Q ss_pred CccccchhHHHHHHHHHhcc-------cc-cCCCCeEEEEEEecCCchHHHHHHHHhcc
Q 002044 174 SEVRGRVEEKNALKSKLLCK-------SS-EQTNAVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~-------~~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
..++|.++.++.+...+... +. ...-..+-|.++|++|+|||++|+.++..
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45889988888887666532 00 00112467889999999999999999873
No 496
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.72 E-value=1.4 Score=48.59 Aligned_cols=149 Identities=14% Similarity=0.164 Sum_probs=76.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCCCcccHHHHHHHHHHHHc--CCceEEEEcCCC
Q 002044 202 QIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAPNLGELNSLLLRIDAFIA--RKKFLLILDDVW 279 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~ 279 (976)
|=-.++|++|.|||+++.++++.- .|+ ++.- +..++.. -..+++.|. ..+-+||+.|+.
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L----~yd--IydL------------eLt~v~~-n~dLr~LL~~t~~kSIivIEDID 296 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL----NYD--IYDL------------ELTEVKL-DSDLRHLLLATPNKSILLIEDID 296 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc----CCc--eEEe------------eeccccC-cHHHHHHHHhCCCCcEEEEeecc
Confidence 455789999999999999999831 222 2210 0111111 111455543 457778888873
Q ss_pred CC--------C-c---------cCcHhHHHhhcC--CCC-CcE-EEEEcCchhhhhc--c--CC-cceEecCCCCHHHHH
Q 002044 280 TD--------D-Y---------SKWEPFRRCLIN--GHR-ESR-ILVTTRKETVARM--M--ES-TDVIFIKELSEQECW 332 (976)
Q Consensus 280 ~~--------~-~---------~~~~~l~~~l~~--~~~-gs~-iivTtR~~~v~~~--~--~~-~~~~~l~~L~~~~~~ 332 (976)
-. . . ..+.-|...+.. ... +=| ||.||...+-... + +. ..-+.|.-=+.+.-.
T Consensus 297 cs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK 376 (457)
T KOG0743|consen 297 CSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFK 376 (457)
T ss_pred cccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHH
Confidence 21 0 0 111223332221 112 224 5567765432211 1 22 446778888889999
Q ss_pred HHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHHhhhh
Q 002044 333 ALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTIGSLL 376 (976)
Q Consensus 333 ~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 376 (976)
.||.+...... ++ .+..+|.+...|.-+.=..++..|
T Consensus 377 ~La~nYL~~~~---~h----~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 377 TLASNYLGIEE---DH----RLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred HHHHHhcCCCC---Cc----chhHHHHHHhhcCccCHHHHHHHH
Confidence 99998873322 22 333445555555555444555443
No 497
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=92.69 E-value=0.23 Score=54.43 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.+..
T Consensus 31 Gei~gIiG~sGaGKSTLlr~I~g 53 (343)
T TIGR02314 31 GQIYGVIGASGAGKSTLIRCVNL 53 (343)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999965
No 498
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=92.68 E-value=0.15 Score=63.31 Aligned_cols=130 Identities=18% Similarity=0.172 Sum_probs=68.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhccc--chhcccccceeehHH-------------HHHHHhCCCCCcccHHHHHHHHHHH
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDE--DVISNFEKRMWNCES-------------IIEALEGFAPNLGELNSLLLRIDAF 265 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~--~~~~~f~~~~wv~~~-------------~~~~l~~~~~~~~~~~~~~~~l~~~ 265 (976)
..-+.|+|.+|.||||..+.++-.. +....=+..+|+... +.+.+..................++
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~e~ 301 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIAKQLIEAHQEL 301 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCCcchhhHHHHHH
Confidence 3478999999999999998876421 111111223333321 1111111111111112222233578
Q ss_pred HcCCceEEEEcCCCCCCccCcH----hHHHhhcCCCCCcEEEEEcCchhhhhccCCcceEecCCCCHHHH
Q 002044 266 IARKKFLLILDDVWTDDYSKWE----PFRRCLINGHRESRILVTTRKETVARMMESTDVIFIKELSEQEC 331 (976)
Q Consensus 266 l~~k~~LlVlDdv~~~~~~~~~----~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~~~ 331 (976)
++..++++++|.+.......-. .+...+ ..-+.+++|+|+|....-........+++..+.++.-
T Consensus 302 l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~-~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i 370 (824)
T COG5635 302 LKTGKLLLLLDGLDELEPKNQRALIREINKFL-QEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQI 370 (824)
T ss_pred HhccchhhHhhccchhhhhhHHHHHHHHHHHh-hhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHH
Confidence 8999999999998442211111 121222 2235689999999765554433345556666655543
No 499
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=92.66 E-value=0.48 Score=49.04 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.++.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G 48 (230)
T TIGR03410 26 GEVTCVLGRNGVGKTTLLKTLMG 48 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999975
No 500
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=92.63 E-value=0.27 Score=54.18 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.+..
T Consensus 31 Gei~~iiG~nGsGKSTLlk~L~G 53 (343)
T PRK11153 31 GEIFGVIGASGAGKSTLIRCINL 53 (343)
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999965
Done!