Query 002044
Match_columns 976
No_of_seqs 530 out of 4190
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 09:59:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002044.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002044hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 3.5E-45 1.2E-49 429.6 23.8 305 177-509 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.6E-36 5.6E-41 356.5 18.3 274 175-500 129-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 8E-35 2.7E-39 380.3 27.0 301 171-507 121-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 9.7E-33 3.3E-37 329.6 25.8 295 173-504 123-449 (591)
5 3rgz_A Protein brassinosteroid 99.9 9.6E-27 3.3E-31 285.8 17.5 417 526-970 198-725 (768)
6 3vq2_A TLR4, TOLL-like recepto 99.9 8.4E-25 2.9E-29 262.5 22.1 402 526-969 30-517 (606)
7 4ecn_A Leucine-rich repeat pro 99.9 5E-25 1.7E-29 268.0 19.3 389 528-964 323-842 (876)
8 4eco_A Uncharacterized protein 99.9 6.5E-25 2.2E-29 263.1 18.3 388 528-963 81-601 (636)
9 3rgz_A Protein brassinosteroid 99.9 2.3E-25 7.8E-30 273.6 14.5 412 528-971 178-702 (768)
10 3t6q_A CD180 antigen; protein- 99.9 2.5E-24 8.6E-29 258.3 22.3 409 526-970 31-521 (606)
11 3vq2_A TLR4, TOLL-like recepto 99.9 5.3E-24 1.8E-28 255.5 23.2 408 533-969 16-493 (606)
12 2z7x_B TOLL-like receptor 1, v 99.9 7.6E-24 2.6E-28 249.0 23.6 160 794-966 321-485 (520)
13 2z63_A TOLL-like receptor 4, v 99.9 1.2E-24 4E-29 259.4 16.4 142 526-679 26-175 (570)
14 4eco_A Uncharacterized protein 99.9 6.1E-25 2.1E-29 263.4 12.7 376 551-966 81-583 (636)
15 3t6q_A CD180 antigen; protein- 99.9 1.3E-23 4.4E-28 252.1 21.4 405 526-969 55-543 (606)
16 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.7E-23 1.6E-27 244.4 25.8 401 531-967 34-515 (562)
17 3j0a_A TOLL-like receptor 5; m 99.9 4E-23 1.4E-27 256.3 24.6 410 526-968 22-545 (844)
18 4ecn_A Leucine-rich repeat pro 99.9 1.5E-23 5E-28 255.1 18.4 352 543-932 440-839 (876)
19 1ziw_A TOLL-like receptor 3; i 99.9 2.8E-23 9.6E-28 252.7 20.8 406 526-969 23-500 (680)
20 1o6v_A Internalin A; bacterial 99.9 1.9E-22 6.3E-27 233.2 24.3 343 528-964 46-390 (466)
21 3j0a_A TOLL-like receptor 5; m 99.9 1.2E-22 4.1E-27 252.1 22.7 138 537-687 13-158 (844)
22 2z81_A CD282 antigen, TOLL-lik 99.9 2.1E-22 7.1E-27 238.6 21.3 416 526-967 24-515 (549)
23 2z63_A TOLL-like receptor 4, v 99.9 7E-23 2.4E-27 244.0 16.6 146 526-683 50-206 (570)
24 1o6v_A Internalin A; bacterial 99.9 1.1E-21 3.7E-26 226.8 22.0 326 548-966 43-370 (466)
25 2z81_A CD282 antigen, TOLL-lik 99.9 6.1E-22 2.1E-26 234.6 18.5 392 539-969 16-493 (549)
26 3v47_A TOLL-like receptor 5B a 99.9 8.7E-22 3E-26 227.4 18.8 360 551-968 30-414 (455)
27 2z7x_B TOLL-like receptor 1, v 99.9 2.7E-21 9.1E-26 227.3 22.7 368 528-932 21-480 (520)
28 1ziw_A TOLL-like receptor 3; i 99.9 2.6E-21 8.9E-26 235.3 22.6 122 839-968 475-603 (680)
29 3o6n_A APL1; leucine-rich repe 99.9 2.4E-21 8.1E-26 218.6 18.4 302 549-932 43-351 (390)
30 3bz5_A Internalin-J, INLJ; leu 99.9 1.1E-20 3.8E-25 216.4 23.4 344 546-968 37-393 (457)
31 4fmz_A Internalin; leucine ric 99.9 2E-21 6.8E-26 215.7 16.5 63 893-962 284-346 (347)
32 3bz5_A Internalin-J, INLJ; leu 99.9 1.1E-20 3.6E-25 216.5 22.5 303 576-971 38-360 (457)
33 4fmz_A Internalin; leucine ric 99.9 2.9E-21 9.8E-26 214.4 17.2 304 546-931 39-344 (347)
34 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.8E-20 9.7E-25 220.4 25.5 360 526-932 50-509 (562)
35 3oja_B Anopheles plasmodium-re 99.8 5.6E-21 1.9E-25 227.7 17.9 302 549-932 49-357 (597)
36 2id5_A Lingo-1, leucine rich r 99.8 2E-20 6.9E-25 217.2 20.0 308 533-932 16-332 (477)
37 3v47_A TOLL-like receptor 5B a 99.8 7.5E-21 2.6E-25 219.5 14.9 362 526-931 28-406 (455)
38 3o6n_A APL1; leucine-rich repe 99.8 6E-20 2.1E-24 207.1 19.9 302 526-907 43-350 (390)
39 3oja_B Anopheles plasmodium-re 99.8 6.8E-20 2.3E-24 218.3 17.6 302 526-907 49-356 (597)
40 1jl5_A Outer protein YOPM; leu 99.8 9.5E-20 3.3E-24 208.4 17.8 353 526-963 9-410 (454)
41 4g8a_A TOLL-like receptor 4; l 99.8 6.2E-19 2.1E-23 212.9 24.2 144 526-681 50-201 (635)
42 4fcg_A Uncharacterized protein 99.8 4.5E-19 1.6E-23 194.0 18.2 231 577-930 78-311 (328)
43 2id5_A Lingo-1, leucine rich r 99.8 1.1E-18 3.8E-23 202.5 19.5 299 580-966 32-337 (477)
44 1jl5_A Outer protein YOPM; leu 99.8 1.1E-18 3.7E-23 199.7 17.1 334 549-963 9-371 (454)
45 2ft3_A Biglycan; proteoglycan, 99.8 1.2E-18 4.1E-23 191.6 16.7 238 530-837 35-280 (332)
46 1xku_A Decorin; proteoglycan, 99.8 3.7E-18 1.3E-22 187.6 17.5 221 551-837 52-279 (330)
47 4fcg_A Uncharacterized protein 99.8 2.1E-18 7.3E-23 188.7 14.0 124 549-684 79-213 (328)
48 1ogq_A PGIP-2, polygalacturona 99.8 9.8E-19 3.3E-23 190.2 10.8 244 528-833 50-304 (313)
49 1xku_A Decorin; proteoglycan, 99.7 3.1E-17 1E-21 180.3 20.0 288 580-960 31-330 (330)
50 2ft3_A Biglycan; proteoglycan, 99.7 7.4E-17 2.5E-21 177.3 22.9 234 581-930 34-274 (332)
51 4g8a_A TOLL-like receptor 4; l 99.7 2.8E-17 9.5E-22 198.3 19.9 415 526-968 74-561 (635)
52 3g06_A SSPH2 (leucine-rich rep 99.7 3.9E-17 1.3E-21 192.4 20.0 85 581-683 41-127 (622)
53 1ogq_A PGIP-2, polygalacturona 99.7 2.2E-18 7.5E-23 187.5 6.9 124 551-683 50-180 (313)
54 2z80_A TOLL-like receptor 2, v 99.7 3.6E-17 1.2E-21 181.5 10.3 250 580-932 52-313 (353)
55 3ogk_B Coronatine-insensitive 99.7 9.3E-19 3.2E-23 209.3 -3.3 92 867-964 434-528 (592)
56 3g06_A SSPH2 (leucine-rich rep 99.7 6.4E-16 2.2E-20 182.0 20.6 115 530-671 42-158 (622)
57 2z66_A Variable lymphocyte rec 99.7 6E-16 2.1E-20 168.0 14.4 86 595-683 16-107 (306)
58 3zyj_A Leucine-rich repeat-con 99.6 3.3E-15 1.1E-19 170.9 19.0 233 595-932 52-291 (440)
59 3zyi_A Leucine-rich repeat-con 99.6 3E-15 1E-19 172.0 18.3 233 595-932 63-302 (452)
60 1z7x_W Ribonuclease inhibitor; 99.6 1.9E-18 6.5E-23 199.7 -8.8 359 528-931 3-409 (461)
61 3zyi_A Leucine-rich repeat-con 99.6 8E-16 2.7E-20 176.7 12.6 236 532-831 58-301 (452)
62 3zyj_A Leucine-rich repeat-con 99.6 1E-15 3.5E-20 175.2 12.6 236 532-831 47-290 (440)
63 2z66_A Variable lymphocyte rec 99.6 5.1E-16 1.7E-20 168.5 9.3 222 551-831 28-259 (306)
64 3qfl_A MLA10; coiled-coil, (CC 99.6 4.2E-16 1.4E-20 138.8 6.7 81 4-88 1-83 (115)
65 3ogk_B Coronatine-insensitive 99.6 8.4E-17 2.9E-21 192.3 2.0 62 867-931 461-524 (592)
66 1z7x_W Ribonuclease inhibitor; 99.6 2.3E-18 7.8E-23 199.1 -11.4 372 550-964 2-413 (461)
67 2z80_A TOLL-like receptor 2, v 99.6 1.4E-15 4.8E-20 168.6 9.2 258 538-831 41-312 (353)
68 2p1m_B Transport inhibitor res 99.6 2.5E-17 8.5E-22 197.0 -7.3 373 527-932 104-518 (594)
69 1ozn_A Reticulon 4 receptor; N 99.6 2.1E-15 7E-20 161.9 8.1 122 550-683 31-159 (285)
70 3oja_A Leucine-rich immune mol 99.6 3.5E-15 1.2E-19 172.3 9.9 59 772-831 143-202 (487)
71 3o53_A Protein LRIM1, AGAP0063 99.6 1.7E-16 5.8E-21 173.0 -2.0 102 552-670 11-115 (317)
72 3o53_A Protein LRIM1, AGAP0063 99.6 1.4E-15 4.6E-20 165.9 4.9 215 548-831 31-248 (317)
73 1ozn_A Reticulon 4 receptor; N 99.6 6E-14 2.1E-18 150.4 17.7 41 891-932 196-237 (285)
74 1wwl_A Monocyte differentiatio 99.5 1.5E-15 5.1E-20 165.1 4.2 62 770-831 198-264 (312)
75 1wwl_A Monocyte differentiatio 99.5 9.5E-16 3.3E-20 166.6 0.5 199 578-831 93-307 (312)
76 2qen_A Walker-type ATPase; unk 99.5 5E-13 1.7E-17 148.0 21.5 283 171-500 9-348 (350)
77 1h6u_A Internalin H; cell adhe 99.5 3.5E-14 1.2E-18 153.7 11.8 65 769-837 169-233 (308)
78 2xwt_C Thyrotropin receptor; s 99.5 1.7E-13 6E-18 142.5 14.7 38 892-932 200-238 (239)
79 1w5s_A Origin recognition comp 99.5 2E-13 6.8E-18 154.9 16.3 289 173-480 21-372 (412)
80 3oja_A Leucine-rich immune mol 99.5 4.8E-14 1.6E-18 162.8 9.9 212 550-831 33-248 (487)
81 1p9a_G Platelet glycoprotein I 99.5 3.6E-13 1.2E-17 144.2 15.0 37 894-931 170-206 (290)
82 2fna_A Conserved hypothetical 99.5 1.4E-12 4.6E-17 144.9 20.3 280 172-499 11-355 (357)
83 2z62_A TOLL-like receptor 4, v 99.5 5.4E-13 1.9E-17 142.1 15.5 85 595-682 16-105 (276)
84 2p1m_B Transport inhibitor res 99.5 1.1E-15 3.8E-20 182.6 -6.2 62 867-930 479-541 (594)
85 1p9a_G Platelet glycoprotein I 99.4 3.2E-13 1.1E-17 144.6 11.7 62 770-831 145-206 (290)
86 2ca6_A RAN GTPase-activating p 99.4 7.9E-15 2.7E-19 164.8 -1.4 249 542-831 23-314 (386)
87 2o6q_A Variable lymphocyte rec 99.4 6.7E-13 2.3E-17 140.8 13.5 63 769-831 153-216 (270)
88 3rfs_A Internalin B, repeat mo 99.4 4E-13 1.4E-17 142.7 11.7 198 548-838 38-240 (272)
89 2z62_A TOLL-like receptor 4, v 99.4 3.2E-13 1.1E-17 143.9 10.6 122 551-684 28-156 (276)
90 2ast_B S-phase kinase-associat 99.4 2.5E-14 8.4E-19 157.6 1.7 116 553-682 49-173 (336)
91 1h6u_A Internalin H; cell adhe 99.4 3.7E-13 1.3E-17 145.6 10.8 190 548-809 38-229 (308)
92 4glp_A Monocyte differentiatio 99.4 7.7E-13 2.6E-17 143.5 11.5 227 550-831 63-305 (310)
93 4ay9_X Follicle-stimulating ho 99.4 2.6E-12 9E-17 141.8 15.8 228 595-905 18-255 (350)
94 2ast_B S-phase kinase-associat 99.4 1.1E-13 3.8E-18 152.3 3.0 166 768-969 137-313 (336)
95 2xwt_C Thyrotropin receptor; s 99.4 1.9E-12 6.3E-17 134.7 10.9 57 773-831 179-237 (239)
96 2ca6_A RAN GTPase-activating p 99.4 5.5E-15 1.9E-19 166.0 -9.0 93 573-667 25-135 (386)
97 4ay9_X Follicle-stimulating ho 99.3 2E-11 6.9E-16 134.7 19.4 238 612-930 12-256 (350)
98 1h6t_A Internalin B; cell adhe 99.3 4E-12 1.4E-16 136.2 10.9 58 771-831 154-211 (291)
99 2qby_B CDC6 homolog 3, cell di 99.3 4.6E-10 1.6E-14 125.7 27.1 282 174-480 20-340 (384)
100 1m9s_A Internalin B; cell inva 99.3 6.8E-12 2.3E-16 147.6 10.5 94 578-682 41-136 (605)
101 3rfs_A Internalin B, repeat mo 99.3 1.7E-11 5.7E-16 130.1 12.5 201 734-968 38-241 (272)
102 1m9s_A Internalin B; cell inva 99.2 4.5E-12 1.5E-16 149.1 6.8 168 605-831 39-208 (605)
103 2v1u_A Cell division control p 99.2 9.6E-10 3.3E-14 123.3 25.6 283 174-480 19-352 (387)
104 3m19_A Variable lymphocyte rec 99.2 5.3E-11 1.8E-15 124.6 14.0 171 580-831 14-190 (251)
105 4ezg_A Putative uncharacterize 99.2 3.4E-11 1.2E-15 120.8 11.6 145 526-686 42-190 (197)
106 1fnn_A CDC6P, cell division co 99.2 7E-10 2.4E-14 124.5 22.7 286 174-481 17-353 (389)
107 2o6q_A Variable lymphocyte rec 99.2 1.5E-10 5E-15 122.7 15.9 182 737-964 37-220 (270)
108 1njg_A DNA polymerase III subu 99.2 1.8E-10 6.3E-15 120.1 16.2 191 174-375 23-230 (250)
109 4glp_A Monocyte differentiatio 99.2 4E-11 1.4E-15 129.9 10.7 35 773-809 272-306 (310)
110 3goz_A Leucine-rich repeat-con 99.2 1.6E-12 5.3E-17 144.4 -0.5 90 574-670 16-125 (362)
111 2qby_A CDC6 homolog 1, cell di 99.2 3.9E-09 1.3E-13 118.2 26.8 283 173-479 19-348 (386)
112 3m19_A Variable lymphocyte rec 99.2 1.2E-10 4.1E-15 121.8 13.4 59 773-831 35-94 (251)
113 4ezg_A Putative uncharacterize 99.2 4.6E-11 1.6E-15 119.8 9.5 150 773-962 44-194 (197)
114 3cvr_A Invasion plasmid antige 99.2 4.1E-11 1.4E-15 139.3 10.0 174 580-832 59-242 (571)
115 1xeu_A Internalin C; cellular 99.2 1.5E-11 5.3E-16 129.4 5.4 163 580-831 19-183 (263)
116 3goz_A Leucine-rich repeat-con 99.1 5.2E-12 1.8E-16 140.2 1.3 237 547-831 18-295 (362)
117 2chg_A Replication factor C sm 99.1 4.7E-10 1.6E-14 115.1 15.2 180 174-373 17-204 (226)
118 1h6t_A Internalin B; cell adhe 99.1 1.7E-10 5.7E-15 123.5 12.2 137 528-683 46-184 (291)
119 3e6j_A Variable lymphocyte rec 99.1 1.3E-10 4.5E-15 119.5 10.4 139 533-685 24-167 (229)
120 4b8c_D Glucose-repressible alc 99.1 9.2E-11 3.2E-15 141.7 10.5 153 528-688 173-327 (727)
121 3cvr_A Invasion plasmid antige 99.1 1.1E-10 3.7E-15 135.7 10.2 38 774-812 208-245 (571)
122 2ell_A Acidic leucine-rich nuc 99.1 1.4E-10 4.8E-15 113.0 7.7 126 550-687 23-157 (168)
123 2v9t_B SLIT homolog 2 protein 99.1 2.9E-10 1E-14 116.0 9.8 137 535-685 18-160 (220)
124 2ell_A Acidic leucine-rich nuc 99.1 1.9E-10 6.7E-15 112.0 8.0 133 526-672 22-165 (168)
125 2je0_A Acidic leucine-rich nuc 99.1 1.3E-10 4.5E-15 110.6 6.3 123 550-684 16-147 (149)
126 1a9n_A U2A', U2A'; complex (nu 99.1 2.8E-10 9.5E-15 111.8 8.7 128 546-687 14-150 (176)
127 2v70_A SLIT-2, SLIT homolog 2 99.0 5E-10 1.7E-14 114.3 9.5 141 532-685 15-161 (220)
128 1xeu_A Internalin C; cellular 99.0 1E-09 3.5E-14 115.4 12.1 142 527-688 40-183 (263)
129 2o6s_A Variable lymphocyte rec 99.0 1.3E-09 4.6E-14 110.2 10.6 123 550-684 27-155 (208)
130 3e6j_A Variable lymphocyte rec 99.0 2.4E-09 8.3E-14 110.0 12.3 129 772-931 39-170 (229)
131 1sxj_B Activator 1 37 kDa subu 99.0 3.3E-09 1.1E-13 115.6 13.6 179 174-374 21-211 (323)
132 2o6s_A Variable lymphocyte rec 99.0 1.9E-09 6.4E-14 109.1 10.6 157 772-969 27-185 (208)
133 1dce_A Protein (RAB geranylger 98.9 1.9E-10 6.4E-15 134.6 1.6 97 581-686 442-542 (567)
134 2v70_A SLIT-2, SLIT homolog 2 98.9 5.5E-09 1.9E-13 106.5 11.4 131 772-931 31-164 (220)
135 1dce_A Protein (RAB geranylger 98.9 2.3E-09 8E-14 125.2 9.6 116 552-682 442-565 (567)
136 2je0_A Acidic leucine-rich nuc 98.9 9.6E-10 3.3E-14 104.6 5.1 123 526-662 15-148 (149)
137 1hqc_A RUVB; extended AAA-ATPa 98.9 2.2E-08 7.5E-13 109.0 16.4 265 173-478 11-324 (324)
138 1a9n_A U2A', U2A'; complex (nu 98.9 2.2E-09 7.4E-14 105.4 6.5 128 526-668 17-154 (176)
139 2xot_A Amphoterin-induced prot 98.9 2.4E-09 8.4E-14 118.4 7.6 129 773-930 39-173 (361)
140 4b8c_D Glucose-repressible alc 98.8 2.5E-09 8.5E-14 129.2 7.3 114 544-670 217-332 (727)
141 2xot_A Amphoterin-induced prot 98.8 6.4E-09 2.2E-13 115.0 9.7 139 533-685 23-171 (361)
142 2v9t_B SLIT homolog 2 protein 98.8 1.9E-08 6.6E-13 102.5 12.3 132 772-932 31-164 (220)
143 1w8a_A SLIT protein; signaling 98.8 1.1E-08 3.6E-13 101.9 8.1 122 533-667 13-139 (192)
144 1ds9_A Outer arm dynein; leuci 98.8 2.8E-10 9.7E-15 114.2 -3.7 127 542-683 39-180 (198)
145 1iqp_A RFCS; clamp loader, ext 98.7 3.6E-08 1.2E-12 107.5 12.4 178 174-373 25-212 (327)
146 3sb4_A Hypothetical leucine ri 98.7 3.7E-08 1.3E-12 107.4 11.9 286 550-926 24-327 (329)
147 2wfh_A SLIT homolog 2 protein 98.7 4.8E-08 1.6E-12 97.1 10.2 102 551-665 31-137 (193)
148 2o6r_A Variable lymphocyte rec 98.7 3.9E-08 1.3E-12 96.4 9.4 105 551-667 28-137 (177)
149 2wfh_A SLIT homolog 2 protein 98.6 7.2E-08 2.5E-12 95.9 9.2 117 554-685 13-134 (193)
150 1ds9_A Outer arm dynein; leuci 98.6 6.6E-10 2.3E-14 111.5 -5.9 101 575-684 43-147 (198)
151 1w8a_A SLIT protein; signaling 98.6 5.8E-08 2E-12 96.5 7.8 97 581-684 30-133 (192)
152 1jr3_A DNA polymerase III subu 98.6 3.4E-07 1.2E-11 101.7 14.8 191 174-373 16-221 (373)
153 2r9u_A Variable lymphocyte rec 98.6 1.2E-07 4E-12 92.5 8.4 85 580-671 33-122 (174)
154 2chq_A Replication factor C sm 98.5 3.3E-07 1.1E-11 99.4 12.5 181 174-372 17-203 (319)
155 3g39_A Variable lymphocyte rec 98.5 1.5E-07 5E-12 91.5 8.3 87 595-684 18-109 (170)
156 1jbk_A CLPB protein; beta barr 98.5 4.9E-07 1.7E-11 89.8 11.5 149 174-335 22-194 (195)
157 3te6_A Regulatory protein SIR3 98.5 1.3E-06 4.3E-11 92.7 14.0 161 175-340 21-212 (318)
158 2o6r_A Variable lymphocyte rec 98.5 3.6E-07 1.2E-11 89.5 9.1 119 553-686 9-133 (177)
159 2r9u_A Variable lymphocyte rec 98.5 2.4E-07 8.2E-12 90.3 7.6 95 583-686 15-114 (174)
160 3bos_A Putative DNA replicatio 98.4 3.2E-07 1.1E-11 94.9 8.4 173 174-372 28-216 (242)
161 3sb4_A Hypothetical leucine ri 98.4 2.2E-07 7.6E-12 101.2 6.8 125 795-955 200-327 (329)
162 3g39_A Variable lymphocyte rec 98.4 8.2E-07 2.8E-11 86.1 9.6 104 553-671 11-119 (170)
163 1sxj_D Activator 1 41 kDa subu 98.3 2.7E-06 9.4E-11 93.5 12.6 179 174-372 37-234 (353)
164 1sxj_E Activator 1 40 kDa subu 98.3 2.8E-06 9.4E-11 93.6 12.4 188 174-372 14-236 (354)
165 3h4m_A Proteasome-activating n 98.3 7.5E-06 2.6E-10 86.9 15.2 185 172-371 15-229 (285)
166 3pfi_A Holliday junction ATP-d 98.3 9E-06 3.1E-10 88.7 16.2 178 173-372 28-226 (338)
167 2qz4_A Paraplegin; AAA+, SPG7, 98.3 1.6E-05 5.3E-10 83.3 16.8 188 173-372 5-221 (262)
168 3pvs_A Replication-associated 98.3 8.4E-06 2.9E-10 91.6 15.4 177 173-370 25-212 (447)
169 1sxj_A Activator 1 95 kDa subu 98.3 5.9E-06 2E-10 95.4 14.3 191 174-375 39-255 (516)
170 2z4s_A Chromosomal replication 98.2 8.4E-06 2.9E-10 91.8 13.8 155 201-370 130-303 (440)
171 4fdw_A Leucine rich hypothetic 98.1 6.5E-05 2.2E-09 83.5 19.2 125 773-930 248-380 (401)
172 2p65_A Hypothetical protein PF 98.1 6E-06 2.1E-10 81.3 8.8 45 174-224 22-66 (187)
173 3u61_B DNA polymerase accessor 98.1 1.6E-05 5.5E-10 86.1 12.6 172 173-368 25-211 (324)
174 3uk6_A RUVB-like 2; hexameric 98.1 1.8E-05 6.3E-10 87.4 12.8 97 270-371 190-301 (368)
175 3eie_A Vacuolar protein sortin 98.0 8.4E-05 2.9E-09 80.1 16.9 188 172-373 16-228 (322)
176 2ifg_A High affinity nerve gro 98.0 8.7E-06 3E-10 89.3 8.2 85 597-683 20-109 (347)
177 3syl_A Protein CBBX; photosynt 98.0 2.2E-05 7.4E-10 84.5 11.2 159 175-340 32-218 (309)
178 1l8q_A Chromosomal replication 98.0 4E-05 1.4E-09 82.9 13.2 153 201-367 37-202 (324)
179 2ra8_A Uncharacterized protein 98.0 7.6E-07 2.6E-11 97.3 -0.7 143 769-931 168-318 (362)
180 2qp9_X Vacuolar protein sortin 97.9 9.7E-05 3.3E-09 80.7 15.3 187 173-373 50-261 (355)
181 3cf0_A Transitional endoplasmi 97.9 0.00017 5.8E-09 76.8 16.9 181 173-368 14-223 (301)
182 1sxj_C Activator 1 40 kDa subu 97.9 8.6E-05 2.9E-09 80.8 14.6 174 174-369 25-208 (340)
183 2w58_A DNAI, primosome compone 97.9 1E-05 3.5E-10 80.9 6.6 118 181-308 36-158 (202)
184 3d8b_A Fidgetin-like protein 1 97.9 0.00011 3.8E-09 80.4 15.3 188 173-374 83-296 (357)
185 1d2n_A N-ethylmaleimide-sensit 97.9 7.6E-05 2.6E-09 78.4 13.5 171 174-365 33-229 (272)
186 1xwi_A SKD1 protein; VPS4B, AA 97.9 0.00018 6E-09 77.4 16.4 190 172-374 10-224 (322)
187 2ifg_A High affinity nerve gro 97.9 1.4E-05 4.9E-10 87.5 7.3 87 576-668 27-117 (347)
188 4fdw_A Leucine rich hypothetic 97.8 0.00022 7.6E-09 79.2 16.3 198 576-839 132-340 (401)
189 3b9p_A CG5977-PA, isoform A; A 97.8 0.00025 8.7E-09 75.5 16.0 187 173-373 20-233 (297)
190 1a5t_A Delta prime, HOLB; zinc 97.8 0.00024 8.3E-09 76.9 15.5 177 180-373 8-205 (334)
191 3un9_A NLR family member X1; l 97.8 7E-06 2.4E-10 90.4 3.3 39 550-589 71-110 (372)
192 3un9_A NLR family member X1; l 97.8 4.5E-06 1.5E-10 91.9 1.4 138 528-668 101-253 (372)
193 3ec2_A DNA replication protein 97.8 1.7E-05 5.7E-10 77.6 4.9 121 179-309 19-143 (180)
194 3e4g_A ATP synthase subunit S, 97.8 1.9E-05 6.3E-10 75.5 5.0 86 551-645 61-154 (176)
195 2zan_A Vacuolar protein sortin 97.7 0.00048 1.7E-08 77.5 17.0 188 173-373 133-345 (444)
196 3vfd_A Spastin; ATPase, microt 97.7 0.00042 1.4E-08 76.9 16.0 186 173-373 114-326 (389)
197 2ra8_A Uncharacterized protein 97.7 5.3E-06 1.8E-10 90.6 0.5 149 790-964 165-322 (362)
198 3n70_A Transport activator; si 97.7 5.3E-05 1.8E-09 70.9 7.3 113 175-308 2-115 (145)
199 4fcw_A Chaperone protein CLPB; 97.7 0.00016 5.5E-09 77.6 11.9 132 174-308 17-169 (311)
200 1qvr_A CLPB protein; coiled co 97.7 0.00012 3.9E-09 90.1 11.6 152 174-338 170-344 (854)
201 3hu3_A Transitional endoplasmi 97.7 0.00052 1.8E-08 77.8 15.9 184 174-372 204-414 (489)
202 4b4t_K 26S protease regulatory 97.6 0.00058 2E-08 75.3 15.1 180 171-365 169-378 (428)
203 4b4t_J 26S protease regulatory 97.6 0.00099 3.4E-08 72.3 16.5 180 172-366 146-354 (405)
204 3pxg_A Negative regulator of g 97.6 0.00043 1.5E-08 78.5 14.1 147 174-339 180-338 (468)
205 1in4_A RUVB, holliday junction 97.6 0.0025 8.6E-08 68.8 19.4 177 174-372 25-222 (334)
206 4fs7_A Uncharacterized protein 97.6 0.0022 7.7E-08 71.2 19.4 305 545-929 65-375 (394)
207 4b4t_L 26S protease subunit RP 97.5 0.0013 4.3E-08 72.8 16.2 180 172-366 179-387 (437)
208 3e4g_A ATP synthase subunit S, 97.5 2E-05 7E-10 75.2 1.7 63 773-835 61-129 (176)
209 1io0_A Tropomodulin; LRR prote 97.5 4.3E-05 1.5E-09 74.9 3.9 119 546-667 31-164 (185)
210 3co5_A Putative two-component 97.5 5.9E-05 2E-09 70.4 4.1 109 175-308 5-115 (143)
211 4b4t_H 26S protease regulatory 97.5 0.0019 6.5E-08 71.1 16.0 179 173-366 208-415 (467)
212 4b4t_M 26S protease regulatory 97.4 0.00082 2.8E-08 74.1 12.3 179 172-365 179-386 (434)
213 2bjv_A PSP operon transcriptio 97.4 0.00022 7.6E-09 74.5 7.4 47 174-224 6-52 (265)
214 2gno_A DNA polymerase III, gam 97.4 0.00093 3.2E-08 70.8 12.1 145 178-339 1-152 (305)
215 1r6b_X CLPA protein; AAA+, N-t 97.4 0.00056 1.9E-08 83.1 11.5 156 174-339 186-362 (758)
216 4fs7_A Uncharacterized protein 97.3 0.0042 1.4E-07 68.9 17.4 316 528-925 71-393 (394)
217 4b4t_I 26S protease regulatory 97.3 0.003 1E-07 68.8 15.3 179 172-365 180-387 (437)
218 1lv7_A FTSH; alpha/beta domain 97.3 0.004 1.4E-07 64.4 15.8 158 173-339 11-195 (257)
219 1ojl_A Transcriptional regulat 97.3 0.00033 1.1E-08 74.6 7.4 46 174-223 2-47 (304)
220 1ofh_A ATP-dependent HSL prote 97.3 0.0011 3.9E-08 70.8 11.3 50 174-223 15-72 (310)
221 3pxi_A Negative regulator of g 97.2 0.0019 6.6E-08 78.3 14.2 146 174-339 180-338 (758)
222 2qgz_A Helicase loader, putati 97.2 0.00029 9.8E-09 75.1 5.9 118 180-308 134-257 (308)
223 3pxi_A Negative regulator of g 97.2 0.00071 2.4E-08 82.1 9.3 155 174-339 491-675 (758)
224 2r62_A Cell division protease 97.1 0.00044 1.5E-08 72.4 6.5 157 173-339 10-196 (268)
225 1io0_A Tropomodulin; LRR prote 97.1 9.5E-05 3.3E-09 72.5 1.2 115 569-684 25-158 (185)
226 2kjq_A DNAA-related protein; s 97.1 9.1E-05 3.1E-09 69.5 0.7 23 202-224 37-59 (149)
227 2ce7_A Cell division protein F 97.1 0.0073 2.5E-07 67.8 15.6 179 173-366 15-221 (476)
228 2c9o_A RUVB-like 1; hexameric 97.0 0.0031 1.1E-07 71.3 12.4 97 271-372 297-409 (456)
229 3m6a_A ATP-dependent protease 96.9 0.0017 5.7E-08 75.1 9.1 164 174-339 81-266 (543)
230 4gt6_A Cell surface protein; l 96.9 0.026 8.7E-07 62.5 18.5 107 546-663 58-169 (394)
231 3t15_A Ribulose bisphosphate c 96.9 0.0071 2.4E-07 63.8 12.9 25 199-223 34-58 (293)
232 3cf2_A TER ATPase, transitiona 96.8 0.009 3.1E-07 71.1 14.6 179 173-366 203-407 (806)
233 2r44_A Uncharacterized protein 96.8 0.0018 6.1E-08 70.0 7.3 148 174-340 27-199 (331)
234 1ixz_A ATP-dependent metallopr 96.7 0.02 7E-07 58.9 14.7 157 173-339 15-199 (254)
235 1r6b_X CLPA protein; AAA+, N-t 96.7 0.0021 7.2E-08 78.1 8.2 50 174-223 458-510 (758)
236 3rw6_A Nuclear RNA export fact 96.7 0.0019 6.6E-08 66.5 6.6 62 573-641 163-231 (267)
237 1qvr_A CLPB protein; coiled co 96.7 0.0041 1.4E-07 76.4 10.3 50 174-223 558-610 (854)
238 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.00093 3.2E-08 69.9 3.3 70 201-279 123-192 (331)
239 1iy2_A ATP-dependent metallopr 96.6 0.036 1.2E-06 57.9 15.6 156 173-339 39-223 (278)
240 2x8a_A Nuclear valosin-contain 96.4 0.025 8.7E-07 58.8 13.0 157 173-339 9-191 (274)
241 4h09_A Hypothetical leucine ri 96.3 0.046 1.6E-06 60.1 14.8 77 576-662 42-121 (379)
242 1um8_A ATP-dependent CLP prote 96.1 0.017 6E-07 63.4 10.6 50 174-223 21-94 (376)
243 1ypw_A Transitional endoplasmi 96.1 0.025 8.4E-07 68.5 12.7 157 173-339 203-385 (806)
244 3rw6_A Nuclear RNA export fact 96.1 0.0033 1.1E-07 64.8 4.2 77 606-684 167-258 (267)
245 2dhr_A FTSH; AAA+ protein, hex 96.1 0.068 2.3E-06 60.3 15.0 177 172-366 29-236 (499)
246 3nbx_X ATPase RAVA; AAA+ ATPas 96.0 0.003 1E-07 71.4 3.7 43 174-224 22-64 (500)
247 4gt6_A Cell surface protein; l 95.9 0.24 8.4E-06 54.5 18.6 128 793-960 261-389 (394)
248 1g5t_A COB(I)alamin adenosyltr 95.9 0.0075 2.6E-07 58.3 5.3 107 202-310 29-164 (196)
249 1ye8_A Protein THEP1, hypothet 95.7 0.02 6.9E-07 55.1 7.5 22 203-224 2-23 (178)
250 2w0m_A SSO2452; RECA, SSPF, un 95.5 0.021 7.2E-07 57.8 7.5 22 202-223 24-45 (235)
251 4h09_A Hypothetical leucine ri 95.3 0.13 4.3E-06 56.5 13.4 98 548-661 43-142 (379)
252 1rz3_A Hypothetical protein rb 95.2 0.019 6.4E-07 56.8 5.6 43 178-223 2-44 (201)
253 2cbz_A Multidrug resistance-as 95.2 0.07 2.4E-06 54.0 10.0 22 202-223 32-53 (237)
254 1u0j_A DNA replication protein 95.2 0.11 3.7E-06 53.0 11.0 37 183-223 90-126 (267)
255 1jr3_D DNA polymerase III, del 95.2 0.12 4.2E-06 55.7 12.4 157 200-371 17-183 (343)
256 1mv5_A LMRA, multidrug resista 95.1 0.076 2.6E-06 54.0 10.0 23 201-223 28-50 (243)
257 2ff7_A Alpha-hemolysin translo 95.1 0.055 1.9E-06 55.1 8.8 22 202-223 36-57 (247)
258 2ixe_A Antigen peptide transpo 94.9 0.085 2.9E-06 54.5 9.7 22 202-223 46-67 (271)
259 2pze_A Cystic fibrosis transme 94.8 0.11 3.6E-06 52.3 9.8 54 260-313 139-194 (229)
260 3cf2_A TER ATPase, transitiona 94.5 0.16 5.6E-06 60.4 12.0 98 172-279 475-580 (806)
261 3nh6_A ATP-binding cassette SU 94.5 0.074 2.5E-06 55.9 8.1 23 201-223 80-102 (306)
262 2yvu_A Probable adenylyl-sulfa 94.4 0.093 3.2E-06 50.8 8.3 24 200-223 12-35 (186)
263 3c8u_A Fructokinase; YP_612366 94.4 0.028 9.5E-07 55.8 4.4 38 182-223 7-44 (208)
264 2eyu_A Twitching motility prot 94.3 0.014 4.8E-07 60.1 2.1 106 200-312 24-136 (261)
265 3hr8_A Protein RECA; alpha and 94.2 0.077 2.6E-06 56.9 7.6 77 200-278 60-148 (356)
266 1qhx_A CPT, protein (chloramph 94.2 0.018 6.2E-07 55.5 2.4 22 202-223 4-25 (178)
267 2ghi_A Transport protein; mult 94.1 0.14 4.8E-06 52.6 9.1 22 202-223 47-68 (260)
268 1odf_A YGR205W, hypothetical 3 94.1 0.037 1.3E-06 57.9 4.8 25 199-223 29-53 (290)
269 3tqc_A Pantothenate kinase; bi 94.1 0.041 1.4E-06 58.2 5.1 46 176-223 69-114 (321)
270 2cvh_A DNA repair and recombin 94.1 0.067 2.3E-06 53.4 6.6 23 201-223 20-42 (220)
271 1zp6_A Hypothetical protein AT 94.1 0.026 9E-07 55.1 3.4 25 200-224 8-32 (191)
272 3lw7_A Adenylate kinase relate 94.0 0.024 8.1E-07 54.4 2.9 20 202-221 2-21 (179)
273 2ga8_A Hypothetical 39.9 kDa p 94.0 0.04 1.4E-06 58.5 4.8 45 177-223 2-46 (359)
274 2orw_A Thymidine kinase; TMTK, 93.9 0.018 6.3E-07 55.8 1.7 22 202-223 4-25 (184)
275 2b8t_A Thymidine kinase; deoxy 93.8 0.051 1.8E-06 54.1 5.0 106 200-310 11-127 (223)
276 1ly1_A Polynucleotide kinase; 93.8 0.029 9.8E-07 54.1 3.1 22 202-223 3-24 (181)
277 3kb2_A SPBC2 prophage-derived 93.8 0.027 9.4E-07 53.8 2.9 22 202-223 2-23 (173)
278 1xp8_A RECA protein, recombina 93.8 0.12 4.1E-06 55.8 8.1 77 201-279 74-162 (366)
279 3vaa_A Shikimate kinase, SK; s 93.7 0.026 8.8E-07 55.6 2.6 23 201-223 25-47 (199)
280 3tui_C Methionine import ATP-b 93.6 0.14 4.8E-06 54.9 8.2 56 259-314 171-229 (366)
281 1u94_A RECA protein, recombina 93.6 0.077 2.6E-06 57.2 6.3 37 201-239 63-99 (356)
282 1gvn_B Zeta; postsegregational 93.6 0.062 2.1E-06 56.2 5.3 25 199-223 31-55 (287)
283 2r8r_A Sensor protein; KDPD, P 93.6 0.18 6.2E-06 49.8 8.3 105 203-311 8-129 (228)
284 1kgd_A CASK, peripheral plasma 93.6 0.029 9.9E-07 54.2 2.5 23 201-223 5-27 (180)
285 3hws_A ATP-dependent CLP prote 93.5 0.049 1.7E-06 59.4 4.5 49 175-223 16-73 (363)
286 3uie_A Adenylyl-sulfate kinase 93.5 0.039 1.3E-06 54.3 3.4 24 200-223 24-47 (200)
287 3trf_A Shikimate kinase, SK; a 93.4 0.031 1.1E-06 54.2 2.5 23 201-223 5-27 (185)
288 2zr9_A Protein RECA, recombina 93.4 0.11 3.8E-06 55.9 7.0 76 201-278 61-148 (349)
289 3dm5_A SRP54, signal recogniti 93.4 0.25 8.4E-06 54.5 9.8 24 200-223 99-122 (443)
290 3gd7_A Fusion complex of cysti 93.4 0.12 4.3E-06 56.1 7.4 22 202-223 48-69 (390)
291 1kag_A SKI, shikimate kinase I 93.3 0.03 1E-06 53.6 2.3 22 202-223 5-26 (173)
292 2p5t_B PEZT; postsegregational 93.3 0.065 2.2E-06 55.0 4.9 41 182-223 14-54 (253)
293 2rhm_A Putative kinase; P-loop 93.2 0.045 1.5E-06 53.4 3.4 24 200-223 4-27 (193)
294 3jvv_A Twitching mobility prot 93.2 0.048 1.6E-06 58.8 3.8 105 202-313 124-235 (356)
295 1nks_A Adenylate kinase; therm 93.2 0.043 1.5E-06 53.5 3.2 22 202-223 2-23 (194)
296 1knq_A Gluconate kinase; ALFA/ 93.1 0.044 1.5E-06 52.5 3.1 24 200-223 7-30 (175)
297 2bdt_A BH3686; alpha-beta prot 93.0 0.049 1.7E-06 53.0 3.3 22 202-223 3-24 (189)
298 4gp7_A Metallophosphoesterase; 93.0 0.047 1.6E-06 52.2 3.1 24 200-223 8-31 (171)
299 2dr3_A UPF0273 protein PH0284; 93.0 0.19 6.6E-06 51.0 8.0 22 202-223 24-45 (247)
300 1sky_E F1-ATPase, F1-ATP synth 92.9 0.13 4.5E-06 56.8 6.8 22 203-224 153-174 (473)
301 1zuh_A Shikimate kinase; alpha 92.9 0.041 1.4E-06 52.4 2.5 24 200-223 6-29 (168)
302 4eun_A Thermoresistant glucoki 92.9 0.042 1.4E-06 54.1 2.6 24 200-223 28-51 (200)
303 2qt1_A Nicotinamide riboside k 92.9 0.059 2E-06 53.3 3.7 24 200-223 20-43 (207)
304 2ze6_A Isopentenyl transferase 92.9 0.049 1.7E-06 55.9 3.1 22 202-223 2-23 (253)
305 1uf9_A TT1252 protein; P-loop, 92.9 0.055 1.9E-06 53.3 3.4 25 199-223 6-30 (203)
306 1xjc_A MOBB protein homolog; s 92.8 0.045 1.5E-06 51.8 2.5 24 200-223 3-26 (169)
307 1ex7_A Guanylate kinase; subst 92.8 0.035 1.2E-06 53.6 1.8 22 202-223 2-23 (186)
308 2hf9_A Probable hydrogenase ni 92.8 0.077 2.6E-06 53.3 4.5 25 200-224 37-61 (226)
309 3t61_A Gluconokinase; PSI-biol 92.8 0.04 1.4E-06 54.3 2.3 23 201-223 18-40 (202)
310 1ukz_A Uridylate kinase; trans 92.7 0.06 2.1E-06 53.1 3.5 25 199-223 13-37 (203)
311 3tau_A Guanylate kinase, GMP k 92.7 0.048 1.7E-06 54.0 2.7 25 200-224 7-31 (208)
312 1kht_A Adenylate kinase; phosp 92.7 0.05 1.7E-06 52.9 2.8 22 202-223 4-25 (192)
313 1uj2_A Uridine-cytidine kinase 92.7 0.055 1.9E-06 55.5 3.2 25 199-223 20-44 (252)
314 3tr0_A Guanylate kinase, GMP k 92.7 0.054 1.8E-06 53.5 3.0 22 202-223 8-29 (205)
315 3iij_A Coilin-interacting nucl 92.6 0.04 1.4E-06 53.2 2.0 23 201-223 11-33 (180)
316 3asz_A Uridine kinase; cytidin 92.6 0.062 2.1E-06 53.3 3.5 24 200-223 5-28 (211)
317 3a00_A Guanylate kinase, GMP k 92.6 0.041 1.4E-06 53.4 2.1 22 202-223 2-23 (186)
318 3fwy_A Light-independent proto 92.6 0.06 2.1E-06 57.0 3.4 25 199-223 46-70 (314)
319 1jjv_A Dephospho-COA kinase; P 92.5 0.062 2.1E-06 53.1 3.3 22 202-223 3-24 (206)
320 1g8p_A Magnesium-chelatase 38 92.5 0.048 1.7E-06 59.1 2.7 45 173-223 23-67 (350)
321 2qor_A Guanylate kinase; phosp 92.5 0.044 1.5E-06 54.2 2.2 24 200-223 11-34 (204)
322 2if2_A Dephospho-COA kinase; a 92.5 0.056 1.9E-06 53.3 3.0 21 203-223 3-23 (204)
323 1vma_A Cell division protein F 92.5 0.25 8.5E-06 51.9 8.0 24 200-223 103-126 (306)
324 2wsm_A Hydrogenase expression/ 92.5 0.073 2.5E-06 53.2 3.9 41 178-224 13-53 (221)
325 2jaq_A Deoxyguanosine kinase; 92.5 0.055 1.9E-06 53.3 2.8 21 203-223 2-22 (205)
326 1tev_A UMP-CMP kinase; ploop, 92.5 0.06 2.1E-06 52.6 3.1 23 201-223 3-25 (196)
327 1y63_A LMAJ004144AAA protein; 92.5 0.055 1.9E-06 52.4 2.7 23 201-223 10-32 (184)
328 3a4m_A L-seryl-tRNA(SEC) kinas 92.4 0.062 2.1E-06 55.4 3.2 23 201-223 4-26 (260)
329 2c95_A Adenylate kinase 1; tra 92.4 0.057 2E-06 52.8 2.8 23 201-223 9-31 (196)
330 3io5_A Recombination and repai 92.4 0.18 6.3E-06 52.4 6.6 75 203-279 30-121 (333)
331 1via_A Shikimate kinase; struc 92.4 0.05 1.7E-06 52.2 2.3 21 203-223 6-26 (175)
332 1z47_A CYSA, putative ABC-tran 92.3 0.24 8.3E-06 53.0 7.7 22 202-223 42-63 (355)
333 2iyv_A Shikimate kinase, SK; t 92.2 0.044 1.5E-06 53.1 1.7 21 203-223 4-24 (184)
334 2j41_A Guanylate kinase; GMP, 92.2 0.063 2.1E-06 53.1 2.8 23 201-223 6-28 (207)
335 3cm0_A Adenylate kinase; ATP-b 92.2 0.076 2.6E-06 51.4 3.4 23 201-223 4-26 (186)
336 1cke_A CK, MSSA, protein (cyti 92.2 0.064 2.2E-06 54.0 2.9 22 202-223 6-27 (227)
337 1lvg_A Guanylate kinase, GMP k 92.1 0.053 1.8E-06 53.3 2.1 22 202-223 5-26 (198)
338 3umf_A Adenylate kinase; rossm 92.1 0.079 2.7E-06 52.5 3.3 25 199-223 27-51 (217)
339 1qf9_A UMP/CMP kinase, protein 92.0 0.076 2.6E-06 51.7 3.2 23 201-223 6-28 (194)
340 3ice_A Transcription terminati 92.0 0.23 7.7E-06 53.1 6.8 34 185-223 163-196 (422)
341 1v43_A Sugar-binding transport 92.0 0.29 9.9E-06 52.8 7.9 22 202-223 38-59 (372)
342 3ney_A 55 kDa erythrocyte memb 92.0 0.065 2.2E-06 52.1 2.5 24 200-223 18-41 (197)
343 1v5w_A DMC1, meiotic recombina 91.9 0.26 8.9E-06 53.0 7.5 25 200-224 121-145 (343)
344 1e6c_A Shikimate kinase; phosp 91.9 0.054 1.8E-06 51.7 1.9 22 202-223 3-24 (173)
345 2bwj_A Adenylate kinase 5; pho 91.9 0.074 2.5E-06 52.1 3.0 23 201-223 12-34 (199)
346 3aez_A Pantothenate kinase; tr 91.9 0.083 2.9E-06 55.8 3.5 24 200-223 89-112 (312)
347 2plr_A DTMP kinase, probable t 91.9 0.078 2.7E-06 52.6 3.1 22 202-223 5-26 (213)
348 1sq5_A Pantothenate kinase; P- 91.9 0.17 5.7E-06 53.6 5.8 24 200-223 79-102 (308)
349 2grj_A Dephospho-COA kinase; T 91.9 0.095 3.2E-06 51.0 3.6 25 199-223 10-34 (192)
350 2ewv_A Twitching motility prot 91.8 0.06 2E-06 58.6 2.3 105 200-312 135-247 (372)
351 2cdn_A Adenylate kinase; phosp 91.8 0.081 2.8E-06 52.0 3.1 24 200-223 19-42 (201)
352 1htw_A HI0065; nucleotide-bind 91.8 0.093 3.2E-06 49.2 3.3 24 200-223 32-55 (158)
353 3rlf_A Maltose/maltodextrin im 91.7 0.12 4.1E-06 55.9 4.5 22 202-223 30-51 (381)
354 2bbw_A Adenylate kinase 4, AK4 91.7 0.079 2.7E-06 54.1 3.0 23 201-223 27-49 (246)
355 2pt5_A Shikimate kinase, SK; a 91.7 0.078 2.7E-06 50.3 2.8 21 203-223 2-22 (168)
356 1znw_A Guanylate kinase, GMP k 91.7 0.084 2.9E-06 52.2 3.0 23 201-223 20-42 (207)
357 3tlx_A Adenylate kinase 2; str 91.7 0.13 4.6E-06 52.2 4.6 24 200-223 28-51 (243)
358 1aky_A Adenylate kinase; ATP:A 91.6 0.076 2.6E-06 53.1 2.6 23 201-223 4-26 (220)
359 2pez_A Bifunctional 3'-phospho 91.4 0.099 3.4E-06 50.3 3.2 24 200-223 4-27 (179)
360 2vli_A Antibiotic resistance p 91.4 0.063 2.2E-06 51.8 1.8 23 201-223 5-27 (183)
361 2z43_A DNA repair and recombin 91.4 0.26 8.8E-06 52.6 6.7 24 201-224 107-130 (324)
362 2pbr_A DTMP kinase, thymidylat 91.4 0.088 3E-06 51.3 2.8 21 203-223 2-22 (195)
363 2jeo_A Uridine-cytidine kinase 91.4 0.1 3.6E-06 53.1 3.4 24 200-223 24-47 (245)
364 2f6r_A COA synthase, bifunctio 91.3 0.11 3.8E-06 54.1 3.7 25 199-223 73-97 (281)
365 4e22_A Cytidylate kinase; P-lo 91.3 0.094 3.2E-06 53.7 3.0 23 201-223 27-49 (252)
366 3b5x_A Lipid A export ATP-bind 91.3 0.4 1.4E-05 55.7 8.7 23 201-223 369-391 (582)
367 1rj9_A FTSY, signal recognitio 91.2 0.091 3.1E-06 55.3 2.9 24 200-223 101-124 (304)
368 2f1r_A Molybdopterin-guanine d 91.2 0.071 2.4E-06 50.7 1.9 22 202-223 3-24 (171)
369 1nn5_A Similar to deoxythymidy 91.1 0.097 3.3E-06 52.0 2.9 23 201-223 9-31 (215)
370 1z6g_A Guanylate kinase; struc 91.1 0.086 2.9E-06 52.6 2.5 23 201-223 23-45 (218)
371 1gtv_A TMK, thymidylate kinase 91.1 0.062 2.1E-06 53.4 1.4 21 203-223 2-22 (214)
372 3qf4_A ABC transporter, ATP-bi 91.1 0.33 1.1E-05 56.4 7.7 23 201-223 369-391 (587)
373 2ged_A SR-beta, signal recogni 91.0 0.15 5.2E-06 49.5 4.1 25 200-224 47-71 (193)
374 1zd8_A GTP:AMP phosphotransfer 91.0 0.1 3.6E-06 52.4 3.0 23 201-223 7-29 (227)
375 2wwf_A Thymidilate kinase, put 90.9 0.11 3.7E-06 51.6 3.0 23 201-223 10-32 (212)
376 1m7g_A Adenylylsulfate kinase; 90.8 0.12 4.2E-06 51.2 3.3 24 200-223 24-47 (211)
377 2axn_A 6-phosphofructo-2-kinas 90.8 0.45 1.5E-05 54.2 8.4 46 200-247 34-80 (520)
378 3e70_C DPA, signal recognition 90.8 0.21 7.1E-06 53.1 5.2 25 199-223 127-151 (328)
379 1s96_A Guanylate kinase, GMP k 90.7 0.12 4E-06 51.6 3.0 24 200-223 15-38 (219)
380 2i3b_A HCR-ntpase, human cance 90.7 0.097 3.3E-06 50.8 2.3 22 203-224 3-24 (189)
381 3b60_A Lipid A export ATP-bind 90.7 0.51 1.7E-05 54.8 8.9 22 202-223 370-391 (582)
382 1g41_A Heat shock protein HSLU 90.7 0.17 5.8E-06 55.9 4.5 50 174-223 15-72 (444)
383 1tue_A Replication protein E1; 90.7 0.12 4.3E-06 50.0 3.0 36 183-223 45-80 (212)
384 1vht_A Dephospho-COA kinase; s 90.6 0.13 4.5E-06 51.2 3.3 23 201-223 4-26 (218)
385 3b9q_A Chloroplast SRP recepto 90.6 0.13 4.6E-06 54.0 3.5 24 200-223 99-122 (302)
386 2z0h_A DTMP kinase, thymidylat 90.6 0.12 4E-06 50.6 2.9 21 203-223 2-22 (197)
387 3fb4_A Adenylate kinase; psych 90.6 0.12 4E-06 51.5 2.9 21 203-223 2-22 (216)
388 4a74_A DNA repair and recombin 90.6 0.13 4.6E-06 51.6 3.4 24 200-223 24-47 (231)
389 3nwj_A ATSK2; P loop, shikimat 90.6 0.087 3E-06 53.6 1.9 22 202-223 49-70 (250)
390 3upu_A ATP-dependent DNA helic 90.5 0.73 2.5E-05 51.8 9.7 21 203-223 47-67 (459)
391 3d3q_A TRNA delta(2)-isopenten 90.5 0.12 4.2E-06 54.7 3.1 22 202-223 8-29 (340)
392 2px0_A Flagellar biosynthesis 90.5 0.12 4E-06 54.3 2.9 24 200-223 104-127 (296)
393 1zak_A Adenylate kinase; ATP:A 90.5 0.097 3.3E-06 52.4 2.2 23 201-223 5-27 (222)
394 2i1q_A DNA repair and recombin 90.4 0.27 9.2E-06 52.4 5.8 25 200-224 97-121 (322)
395 3a8t_A Adenylate isopentenyltr 90.4 0.14 4.7E-06 54.1 3.3 24 200-223 39-62 (339)
396 3p32_A Probable GTPase RV1496/ 90.4 0.25 8.4E-06 53.5 5.4 25 199-223 77-101 (355)
397 1fx0_B ATP synthase beta chain 90.4 0.4 1.4E-05 53.1 7.0 76 202-278 166-275 (498)
398 3dl0_A Adenylate kinase; phosp 90.3 0.13 4.3E-06 51.3 2.9 21 203-223 2-22 (216)
399 2v54_A DTMP kinase, thymidylat 90.3 0.13 4.4E-06 50.6 2.9 23 202-224 5-27 (204)
400 2pcj_A ABC transporter, lipopr 90.3 0.14 4.6E-06 51.4 3.0 22 202-223 31-52 (224)
401 1np6_A Molybdopterin-guanine d 90.3 0.12 4.1E-06 49.3 2.5 24 200-223 5-28 (174)
402 2ehv_A Hypothetical protein PH 90.2 0.13 4.6E-06 52.4 3.0 23 201-223 30-52 (251)
403 4a82_A Cystic fibrosis transme 90.1 0.45 1.5E-05 55.2 7.7 23 201-223 367-389 (578)
404 3tif_A Uncharacterized ABC tra 90.1 0.14 4.8E-06 51.7 3.0 22 202-223 32-53 (235)
405 2onk_A Molybdate/tungstate ABC 90.1 0.13 4.5E-06 52.0 2.8 22 202-223 25-46 (240)
406 3qf4_B Uncharacterized ABC tra 90.1 0.5 1.7E-05 55.0 8.1 23 201-223 381-403 (598)
407 3ake_A Cytidylate kinase; CMP 90.0 0.14 4.8E-06 50.5 2.9 21 203-223 4-24 (208)
408 3be4_A Adenylate kinase; malar 89.9 0.12 4.1E-06 51.5 2.3 22 202-223 6-27 (217)
409 3lnc_A Guanylate kinase, GMP k 89.8 0.11 3.7E-06 52.4 1.9 22 202-223 28-50 (231)
410 3crm_A TRNA delta(2)-isopenten 89.8 0.15 5.3E-06 53.6 3.1 22 202-223 6-27 (323)
411 3k1j_A LON protease, ATP-depen 89.7 0.16 5.6E-06 59.3 3.6 42 174-223 41-82 (604)
412 3r20_A Cytidylate kinase; stru 89.7 0.15 5.3E-06 51.0 2.9 23 201-223 9-31 (233)
413 3b85_A Phosphate starvation-in 89.7 0.13 4.3E-06 50.8 2.2 22 202-223 23-44 (208)
414 2wji_A Ferrous iron transport 89.7 0.2 7E-06 47.2 3.6 23 202-224 4-26 (165)
415 3exa_A TRNA delta(2)-isopenten 89.6 0.17 5.7E-06 52.7 3.1 23 201-223 3-25 (322)
416 1yrb_A ATP(GTP)binding protein 89.6 0.2 7E-06 51.5 3.9 25 199-223 12-36 (262)
417 3end_A Light-independent proto 89.6 0.17 5.9E-06 53.5 3.4 26 198-223 38-63 (307)
418 3gfo_A Cobalt import ATP-bindi 89.5 0.16 5.5E-06 52.4 3.0 22 202-223 35-56 (275)
419 2og2_A Putative signal recogni 89.5 0.18 6.2E-06 54.2 3.4 24 200-223 156-179 (359)
420 2zts_A Putative uncharacterize 89.5 0.29 1E-05 49.7 5.0 38 201-239 30-67 (251)
421 1e4v_A Adenylate kinase; trans 89.5 0.17 5.7E-06 50.3 3.0 21 203-223 2-22 (214)
422 2zej_A Dardarin, leucine-rich 89.4 0.16 5.5E-06 49.0 2.7 22 203-224 4-25 (184)
423 3bh0_A DNAB-like replicative h 89.4 0.91 3.1E-05 48.0 8.8 37 201-239 68-104 (315)
424 1b0u_A Histidine permease; ABC 89.4 0.17 5.7E-06 52.1 3.0 22 202-223 33-54 (262)
425 2xb4_A Adenylate kinase; ATP-b 89.3 0.17 5.7E-06 50.7 2.8 21 203-223 2-22 (223)
426 1oix_A RAS-related protein RAB 89.3 0.21 7.2E-06 48.5 3.5 25 200-224 28-52 (191)
427 4akg_A Glutathione S-transfera 89.3 1.7 5.6E-05 59.0 12.8 22 202-223 1268-1289(2695)
428 1ji0_A ABC transporter; ATP bi 89.3 0.18 6.1E-06 51.1 3.0 22 202-223 33-54 (240)
429 2yhs_A FTSY, cell division pro 89.2 0.31 1.1E-05 54.2 5.1 24 200-223 292-315 (503)
430 1sgw_A Putative ABC transporte 89.2 0.15 5.2E-06 50.4 2.4 22 202-223 36-57 (214)
431 1g6h_A High-affinity branched- 89.2 0.18 6.1E-06 51.7 3.0 22 202-223 34-55 (257)
432 2olj_A Amino acid ABC transpor 89.2 0.18 6.1E-06 51.8 3.0 22 202-223 51-72 (263)
433 1q57_A DNA primase/helicase; d 89.2 0.7 2.4E-05 52.6 8.2 38 200-239 241-279 (503)
434 4g1u_C Hemin import ATP-bindin 89.2 0.18 6.1E-06 51.9 2.9 22 202-223 38-59 (266)
435 1zu4_A FTSY; GTPase, signal re 89.1 0.21 7.1E-06 52.9 3.5 24 200-223 104-127 (320)
436 2dyk_A GTP-binding protein; GT 89.1 0.21 7.2E-06 46.6 3.2 23 202-224 2-24 (161)
437 2d2e_A SUFC protein; ABC-ATPas 89.0 0.19 6.6E-06 51.2 3.0 22 202-223 30-51 (250)
438 3sr0_A Adenylate kinase; phosp 89.0 0.19 6.5E-06 49.4 2.9 21 203-223 2-22 (206)
439 1vpl_A ABC transporter, ATP-bi 88.9 0.19 6.6E-06 51.3 3.0 22 202-223 42-63 (256)
440 3foz_A TRNA delta(2)-isopenten 88.9 0.23 7.7E-06 51.7 3.5 24 200-223 9-32 (316)
441 1ak2_A Adenylate kinase isoenz 88.9 0.18 6.2E-06 50.8 2.8 23 201-223 16-38 (233)
442 1ltq_A Polynucleotide kinase; 88.9 0.19 6.6E-06 52.9 3.1 22 202-223 3-24 (301)
443 2ck3_D ATP synthase subunit be 88.9 0.41 1.4E-05 52.7 5.7 34 185-223 142-175 (482)
444 2zu0_C Probable ATP-dependent 88.8 0.2 6.8E-06 51.6 3.0 22 202-223 47-68 (267)
445 2qi9_C Vitamin B12 import ATP- 88.6 0.21 7.2E-06 50.8 3.0 22 202-223 27-48 (249)
446 2f9l_A RAB11B, member RAS onco 88.5 0.19 6.6E-06 49.1 2.6 24 201-224 5-28 (199)
447 2wjg_A FEOB, ferrous iron tran 88.5 0.27 9.3E-06 47.3 3.6 25 200-224 6-30 (188)
448 3zvl_A Bifunctional polynucleo 88.5 0.21 7E-06 55.4 3.0 24 200-223 257-280 (416)
449 2vp4_A Deoxynucleoside kinase; 88.5 0.23 7.9E-06 49.9 3.2 25 199-223 18-42 (230)
450 3l0o_A Transcription terminati 88.4 0.47 1.6E-05 50.6 5.5 35 184-223 163-197 (427)
451 2nq2_C Hypothetical ABC transp 88.4 0.22 7.5E-06 50.8 3.0 22 202-223 32-53 (253)
452 1a7j_A Phosphoribulokinase; tr 88.4 0.11 3.8E-06 54.3 0.8 24 200-223 4-27 (290)
453 2yz2_A Putative ABC transporte 88.3 0.22 7.5E-06 51.3 3.0 22 202-223 34-55 (266)
454 2ihy_A ABC transporter, ATP-bi 88.3 0.22 7.5E-06 51.6 3.0 22 202-223 48-69 (279)
455 2qmh_A HPR kinase/phosphorylas 88.3 0.25 8.6E-06 47.6 3.1 22 202-223 35-56 (205)
456 1q3t_A Cytidylate kinase; nucl 88.3 0.22 7.4E-06 50.4 2.8 25 199-223 14-38 (236)
457 2q6t_A DNAB replication FORK h 88.2 0.81 2.8E-05 51.1 7.7 38 201-239 200-237 (444)
458 1n0w_A DNA repair protein RAD5 88.2 0.23 8E-06 50.3 3.0 23 201-223 24-46 (243)
459 2xxa_A Signal recognition part 88.1 0.26 8.8E-06 54.6 3.5 24 200-223 99-122 (433)
460 2v3c_C SRP54, signal recogniti 88.1 0.26 8.9E-06 54.6 3.5 24 200-223 98-121 (432)
461 3e1s_A Exodeoxyribonuclease V, 88.0 0.65 2.2E-05 53.6 6.9 22 202-223 205-226 (574)
462 1tf7_A KAIC; homohexamer, hexa 87.9 0.58 2E-05 53.6 6.5 23 201-223 281-303 (525)
463 2ce2_X GTPase HRAS; signaling 87.9 0.24 8.4E-06 46.3 2.8 22 203-224 5-26 (166)
464 1cr0_A DNA primase/helicase; R 87.9 0.25 8.5E-06 51.9 3.1 23 201-223 35-57 (296)
465 2v9p_A Replication protein E1; 87.8 0.25 8.6E-06 51.7 3.0 24 200-223 125-148 (305)
466 2yl4_A ATP-binding cassette SU 87.8 0.73 2.5E-05 53.6 7.3 23 201-223 370-392 (595)
467 2j37_W Signal recognition part 87.7 0.48 1.6E-05 53.4 5.4 25 199-223 99-123 (504)
468 1ls1_A Signal recognition part 87.7 0.28 9.7E-06 51.3 3.4 23 201-223 98-120 (295)
469 2lkc_A Translation initiation 87.7 0.33 1.1E-05 46.2 3.6 25 200-224 7-31 (178)
470 3sop_A Neuronal-specific septi 87.7 0.27 9.2E-06 50.7 3.1 21 203-223 4-24 (270)
471 1nlf_A Regulatory protein REPA 87.6 0.27 9.1E-06 51.2 3.1 22 202-223 31-52 (279)
472 1nij_A Hypothetical protein YJ 87.6 0.28 9.5E-06 52.1 3.3 24 200-223 3-26 (318)
473 3thx_B DNA mismatch repair pro 87.6 0.58 2E-05 56.7 6.4 111 200-314 672-801 (918)
474 2gj8_A MNME, tRNA modification 87.6 0.27 9.4E-06 46.7 3.0 23 202-224 5-27 (172)
475 3thx_A DNA mismatch repair pro 87.4 0.7 2.4E-05 56.2 7.0 111 200-315 661-791 (934)
476 4a1f_A DNAB helicase, replicat 87.3 0.58 2E-05 49.7 5.6 37 201-239 46-82 (338)
477 1svi_A GTP-binding protein YSX 87.3 0.33 1.1E-05 47.1 3.5 25 200-224 22-46 (195)
478 3bgw_A DNAB-like replicative h 87.3 1.3 4.6E-05 49.1 8.7 38 200-239 196-233 (444)
479 3q72_A GTP-binding protein RAD 87.3 0.27 9.3E-06 46.1 2.7 22 203-224 4-25 (166)
480 2nzj_A GTP-binding protein REM 87.3 0.38 1.3E-05 45.5 3.8 24 201-224 4-27 (175)
481 2pjz_A Hypothetical protein ST 87.2 0.28 9.7E-06 50.2 3.0 22 202-223 31-52 (263)
482 1tq4_A IIGP1, interferon-induc 87.2 0.39 1.3E-05 52.6 4.2 24 200-223 68-91 (413)
483 4eaq_A DTMP kinase, thymidylat 87.2 0.32 1.1E-05 48.8 3.3 24 200-223 25-48 (229)
484 1cp2_A CP2, nitrogenase iron p 87.2 0.32 1.1E-05 50.2 3.4 22 202-223 2-23 (269)
485 1z2a_A RAS-related protein RAB 87.1 0.35 1.2E-05 45.4 3.4 25 200-224 4-28 (168)
486 2ocp_A DGK, deoxyguanosine kin 87.1 0.32 1.1E-05 49.3 3.3 23 201-223 2-24 (241)
487 2afh_E Nitrogenase iron protei 87.1 0.33 1.1E-05 50.8 3.5 23 201-223 2-24 (289)
488 3eph_A TRNA isopentenyltransfe 87.1 0.3 1E-05 52.8 3.2 22 202-223 3-24 (409)
489 3con_A GTPase NRAS; structural 87.1 0.27 9.3E-06 47.5 2.6 23 202-224 22-44 (190)
490 3f9v_A Minichromosome maintena 87.0 0.25 8.5E-06 57.4 2.6 51 174-224 295-350 (595)
491 3vr4_D V-type sodium ATPase su 86.9 0.34 1.2E-05 53.0 3.5 22 203-224 153-174 (465)
492 2qtf_A Protein HFLX, GTP-bindi 86.9 0.67 2.3E-05 50.0 5.8 25 200-224 178-202 (364)
493 2erx_A GTP-binding protein DI- 86.8 0.31 1.1E-05 45.9 2.9 23 202-224 4-26 (172)
494 1fzq_A ADP-ribosylation factor 86.7 0.41 1.4E-05 45.9 3.7 25 200-224 15-39 (181)
495 1svm_A Large T antigen; AAA+ f 86.7 0.3 1E-05 52.9 2.9 24 200-223 168-191 (377)
496 1m7b_A RND3/RHOE small GTP-bin 86.7 0.31 1.1E-05 46.8 2.8 25 200-224 6-30 (184)
497 3kl4_A SRP54, signal recogniti 86.7 0.3 1E-05 53.8 2.9 24 200-223 96-119 (433)
498 1u8z_A RAS-related protein RAL 86.6 0.31 1.1E-05 45.7 2.7 24 201-224 4-27 (168)
499 2f7s_A C25KG, RAS-related prot 86.5 1.3 4.6E-05 43.6 7.6 25 200-224 24-48 (217)
500 2bbs_A Cystic fibrosis transme 86.5 0.33 1.1E-05 50.5 3.1 22 202-223 65-86 (290)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=3.5e-45 Score=429.56 Aligned_cols=305 Identities=19% Similarity=0.234 Sum_probs=240.4
Q ss_pred ccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhc--ccchhcccccceeehH-------------HH
Q 002044 177 RGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYN--DEDVISNFEKRMWNCE-------------SI 241 (976)
Q Consensus 177 ~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~~~~~f~~~~wv~~-------------~~ 241 (976)
|||+.++++|.++|.... ....++|+|+|||||||||||+++|+ +.+++.+|+.++||++ .+
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 599999999999997542 33689999999999999999999998 6789999999999975 34
Q ss_pred HHHHhCCCC-------CcccHHHHHHHHHHHHcCC-ceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCchhhhh
Q 002044 242 IEALEGFAP-------NLGELNSLLLRIDAFIARK-KFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKETVAR 313 (976)
Q Consensus 242 ~~~l~~~~~-------~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 313 (976)
+.++..... +..+...+...+++.|+++ ||||||||||+.+...|.. .+||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHH
Confidence 455543311 1224566788999999996 9999999999753222221 27899999999999998
Q ss_pred ccC-CcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHHhhhhccCCCHHHHHHHHhhh
Q 002044 314 MME-STDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTIGSLLRFKRTREEWQSILDSE 392 (976)
Q Consensus 314 ~~~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~l~~~ 392 (976)
.++ ...+|+|++|+.++||+||.+.+|+.. .++.+.+++++|+++|+|+||||+++|+.|+.+ + ..|...+.+.
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHH
Confidence 876 346899999999999999999987543 246788999999999999999999999999765 2 3343444433
Q ss_pred hhhhhhhhhhhhHHHHhhhcCCcHHHHHHHh-----------hhcccCCCceeChHHHHHHHHHc--CcccccC-Cchhh
Q 002044 393 IWQLEEFEKGLLAPLLLSYNDLPTIIKQCFL-----------YCAVFPKDCFLERDELIKLWMAQ--GYIVQKG-NKEME 458 (976)
Q Consensus 393 ~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl-----------~~~~fp~~~~i~~~~li~~w~a~--g~i~~~~-~~~~~ 458 (976)
.+.. ....+..++.+||+.||+++|.||+ |||+||+++.|+ ++.|+|+ ||+.... +..+
T Consensus 355 l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~- 427 (549)
T 2a5y_B 355 LESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLD- 427 (549)
T ss_dssp HHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCT-
T ss_pred hhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCH-
Confidence 3222 2356889999999999999999999 999999999999 8899999 9998765 4445
Q ss_pred HHHHHHHHHHHHHhcCCccccccCCCCcEeEEEechhHHHHHHHhhhhhce
Q 002044 459 MEMIGEGYFDYLATRSFFQEFEKDEAGIVRRCKMHDIVHDFAQFLTKKEYA 509 (976)
Q Consensus 459 ~~~~~~~~~~~L~~r~ll~~~~~~~~~~~~~~~mHdlv~~l~~~~~~~e~~ 509 (976)
+++++ |+++|+++||++....+ ...+|+|||++|++|+.++.+++.
T Consensus 428 -~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 428 -DEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp -HHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred -HHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 78888 99999999999986543 335799999999999998876654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.6e-36 Score=356.48 Aligned_cols=274 Identities=18% Similarity=0.201 Sum_probs=212.9
Q ss_pred ccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhccccc-ceeehH-------H----HH
Q 002044 175 EVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEK-RMWNCE-------S----II 242 (976)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~-------~----~~ 242 (976)
..|||+.++++|.++|... ++.++|+|+||||+||||||+++|++.+++.+|+. ++|+++ . +.
T Consensus 129 ~~VGRe~eLeeL~elL~~~-----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC-----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhcc-----CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3499999999999999742 24789999999999999999999988788999987 899876 2 22
Q ss_pred HHHhCC------CCC-----cccHHHHHHHHHHHH---cCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCc
Q 002044 243 EALEGF------APN-----LGELNSLLLRIDAFI---ARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRK 308 (976)
Q Consensus 243 ~~l~~~------~~~-----~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 308 (976)
+.+... ..+ ..+.+.+...+++.| .++|+||||||||+. ..|+. ++ +||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~----f~---pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNA----FN---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHH----HH---SSCCEEEECSC
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHh----hC---CCeEEEEeccC
Confidence 221110 011 113345566677766 679999999999863 44544 32 68999999999
Q ss_pred hhhhhccCCcceEecC------CCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHHhhhhccCC-C
Q 002044 309 ETVARMMESTDVIFIK------ELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTIGSLLRFKR-T 381 (976)
Q Consensus 309 ~~v~~~~~~~~~~~l~------~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~-~ 381 (976)
+.++..+.....|.++ +|+.+|||+||++.. +.. . .++..+| |+|+||||+++|+.|+.+. +
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s 343 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----P---QDLPREV---LTTNPRRLSIIAESIRDGLAT 343 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSS
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC----H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCC
Confidence 9988654444466776 999999999999884 322 1 2222333 9999999999999998774 6
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhHHHHhhhcCCcHHH-HHHHhhhcccCCCceeChHHHHHHHHHcCcccccCCchhhHH
Q 002044 382 REEWQSILDSEIWQLEEFEKGLLAPLLLSYNDLPTII-KQCFLYCAVFPKDCFLERDELIKLWMAQGYIVQKGNKEMEME 460 (976)
Q Consensus 382 ~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~-k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~ 460 (976)
.+.|... ....+..+|++||+.||++. |.||+|||+||+++.|+++.++.+|+++|. +
T Consensus 344 ~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGe-----------e 402 (1221)
T 1vt4_I 344 WDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-----------S 402 (1221)
T ss_dssp HHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-----------H
T ss_pred HHHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-----------H
Confidence 7788653 13568999999999999999 999999999999999999999999998871 2
Q ss_pred HHHHHHHHHHHhcCCccccccCCCCcEeEEEechhHHHHH
Q 002044 461 MIGEGYFDYLATRSFFQEFEKDEAGIVRRCKMHDIVHDFA 500 (976)
Q Consensus 461 ~~~~~~~~~L~~r~ll~~~~~~~~~~~~~~~mHdlv~~l~ 500 (976)
.+..++++|+++||++... ...+|+|||++++++
T Consensus 403 -dAe~~L~eLvdRSLLq~d~-----~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 403 -DVMVVVNKLHKYSLVEKQP-----KESTISIPSIYLELK 436 (1221)
T ss_dssp -HHHHHHHHHHTSSSSSBCS-----SSSEEBCCCHHHHHH
T ss_pred -HHHHHHHHHHhhCCEEEeC-----CCCEEEehHHHHHHh
Confidence 3678999999999998731 124689999999865
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8e-35 Score=380.34 Aligned_cols=301 Identities=23% Similarity=0.278 Sum_probs=235.8
Q ss_pred ccCCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccch-hccc-ccceeehH---------
Q 002044 171 IDLSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDV-ISNF-EKRMWNCE--------- 239 (976)
Q Consensus 171 ~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~--------- 239 (976)
.+.+.||||++++++|.++|.... ++.++|+|+||||+||||||+++|++.+. ..+| +.++|+++
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 345679999999999999997542 36899999999999999999999997543 4456 45669875
Q ss_pred ----HHHHHHhCCC----CCcccHHHHHHHHHHHHcCC--ceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCch
Q 002044 240 ----SIIEALEGFA----PNLGELNSLLLRIDAFIARK--KFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKE 309 (976)
Q Consensus 240 ----~~~~~l~~~~----~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 309 (976)
.+...+.... ....+.+.+...++..+.++ ||||||||||+. ..|+ ...+||+||||||++
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~-------~~~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLK-------AFDNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHT-------TTCSSCEEEEEESST
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHH-------hhcCCCEEEEEcCCH
Confidence 2233333221 22346678888899999877 999999999864 2232 236789999999999
Q ss_pred hhhhc-cCCcceEecCC-CCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHHhhhhccCCCHHHHHH
Q 002044 310 TVARM-MESTDVIFIKE-LSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTIGSLLRFKRTREEWQS 387 (976)
Q Consensus 310 ~v~~~-~~~~~~~~l~~-L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~ 387 (976)
.++.. ++....+.+++ |++++|++||...++.. .+.+.+++++|+++|+|+||||+++|++|+.+. ..|..
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~ 340 (1249)
T 3sfz_A 268 SVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAY 340 (1249)
T ss_dssp TTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHH
T ss_pred HHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHH
Confidence 99854 45678899996 99999999999988432 233456788999999999999999999998765 35666
Q ss_pred HHhhhhhhh--------hhhhhhhhHHHHhhhcCCcHHHHHHHhhhcccCCCceeChHHHHHHHHHcCcccccCCchhhH
Q 002044 388 ILDSEIWQL--------EEFEKGLLAPLLLSYNDLPTIIKQCFLYCAVFPKDCFLERDELIKLWMAQGYIVQKGNKEMEM 459 (976)
Q Consensus 388 ~l~~~~~~~--------~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~ 459 (976)
.+....... ......+..+|.+||+.||+++|.||+|||+||+++.|+++.++.+|.++
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------- 407 (1249)
T 3sfz_A 341 YLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------- 407 (1249)
T ss_dssp HHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------------
T ss_pred HHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------------
Confidence 655432111 11124689999999999999999999999999999999999999999664
Q ss_pred HHHHHHHHHHHHhcCCccccccCCCCcEeEEEechhHHHHHHHhhhhh
Q 002044 460 EMIGEGYFDYLATRSFFQEFEKDEAGIVRRCKMHDIVHDFAQFLTKKE 507 (976)
Q Consensus 460 ~~~~~~~~~~L~~r~ll~~~~~~~~~~~~~~~mHdlv~~l~~~~~~~e 507 (976)
++.++.++++|++++|++... .+...+|+||+++|++++..+.++
T Consensus 408 ~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 567889999999999998653 344457999999999999887655
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=9.7e-33 Score=329.63 Aligned_cols=295 Identities=23% Similarity=0.282 Sum_probs=225.3
Q ss_pred CCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccch-hcccc-cceeehH------HHHH-
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDV-ISNFE-KRMWNCE------SIIE- 243 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f~-~~~wv~~------~~~~- 243 (976)
.+.||||+.++++|.++|.... ++.++|+|+||||+||||||.+++++.++ ..+|+ .++|+++ .++.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~ 198 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMK 198 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHH
Confidence 4579999999999999997532 35789999999999999999999997655 78894 7899875 1222
Q ss_pred ------HHhCC----CCCcccHHHHHHHHHHHHcC--CceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCchhh
Q 002044 244 ------ALEGF----APNLGELNSLLLRIDAFIAR--KKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKETV 311 (976)
Q Consensus 244 ------~l~~~----~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 311 (976)
.+... .....+.+.....+...+.+ +++||||||||+. +.+ . ...+|++||||||+..+
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----~~l-~---~l~~~~~ilvTsR~~~~ 269 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----WVL-K---AFDSQCQILLTTRDKSV 269 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----HHH-H---TTCSSCEEEEEESCGGG
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-----HHH-H---HhcCCCeEEEECCCcHH
Confidence 22211 12234566777888888876 7999999999853 122 2 23568999999999988
Q ss_pred hhccCCcceEec---CCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHHhhhhccCCCHHHHHHH
Q 002044 312 ARMMESTDVIFI---KELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTIGSLLRFKRTREEWQSI 388 (976)
Q Consensus 312 ~~~~~~~~~~~l---~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~ 388 (976)
+..+. ...+++ ++|+.+++++||...++.. .....+.+.+|+++|+|+||||..+|+.++.+. ..|...
T Consensus 270 ~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~ 341 (591)
T 1z6t_A 270 TDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYY 341 (591)
T ss_dssp GTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHH
T ss_pred HHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHH
Confidence 86543 234444 5899999999999988531 122345678899999999999999999998664 357766
Q ss_pred Hhhhhhhh--------hhhhhhhhHHHHhhhcCCcHHHHHHHhhhcccCCCceeChHHHHHHHHHcCcccccCCchhhHH
Q 002044 389 LDSEIWQL--------EEFEKGLLAPLLLSYNDLPTIIKQCFLYCAVFPKDCFLERDELIKLWMAQGYIVQKGNKEMEME 460 (976)
Q Consensus 389 l~~~~~~~--------~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~ 460 (976)
+....... ......+..++..||+.||++.|.||++||+||+++.|+.+.+...|.++ .
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------------~ 408 (591)
T 1z6t_A 342 LKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------------T 408 (591)
T ss_dssp HHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------------H
T ss_pred HHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------------H
Confidence 65422111 11124688999999999999999999999999999999999999999653 3
Q ss_pred HHHHHHHHHHHhcCCccccccCCCCcEeEEEechhHHHHHHHhh
Q 002044 461 MIGEGYFDYLATRSFFQEFEKDEAGIVRRCKMHDIVHDFAQFLT 504 (976)
Q Consensus 461 ~~~~~~~~~L~~r~ll~~~~~~~~~~~~~~~mHdlv~~l~~~~~ 504 (976)
+.+..++++|+++||++... ++...+|+||+++++++....
T Consensus 409 ~~~~~~l~~L~~~~Ll~~~~---~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 409 EEVEDILQEFVNKSLLFCDR---NGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHHHTTSSEEEE---ETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcCeEEec---CCCccEEEEcHHHHHHHHhhh
Confidence 45678999999999998543 233457999999999998773
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=9.6e-27 Score=285.80 Aligned_cols=417 Identities=18% Similarity=0.143 Sum_probs=225.2
Q ss_pred ccCceeEEEEEccCCCCCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccc------------
Q 002044 526 SQEKLRHLMLVLGYKNSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSL------------ 593 (976)
Q Consensus 526 ~~~~~r~l~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l------------ 593 (976)
...+++++.+..+.....++.+..+++|++|++++|.+.+.. +..+.++++|++|++++|.-.
T Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~-----~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~ 272 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF-----SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQ 272 (768)
T ss_dssp TCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCH-----HHHTTTCSSCCEEECCSSCCEESCCCCCCTTCC
T ss_pred cCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcc-----cHHHhcCCCCCEEECCCCcccCccCccccCCCC
Confidence 445677777777766554444777888888888888765432 333777888888888754311
Q ss_pred ----cCCCCc-ccCccccCC-CccceecC--cccc-ccCccccccCCccEEecCCCCCCcccchh-hcccCCCcEEEecc
Q 002044 594 ----IGSGTN-EIPKGIKKL-RHLRYLKL--YLVE-KLPETCCELLNLQTLNMCGSPGLKRLPQG-IGKLINLRHLMFEV 663 (976)
Q Consensus 594 ----~~~~~~-~lp~~i~~L-~~Lr~L~L--~~~~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~~ 663 (976)
.++.+. .+|..+..+ ++|++|++ +.+. .+|..++++++|++|++++|.....+|.. ++++++|++|+++.
T Consensus 273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~ 352 (768)
T 3rgz_A 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352 (768)
T ss_dssp EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence 011111 334444433 55555555 2222 34555555555555555555422245544 55555555555554
Q ss_pred cccc-cCcccccCCC-CCCcCCceEEecCCCCCCCcccc--ccccccc------------------ccCCCceEEcCcCC
Q 002044 664 DYLE-YMPKGIERLT-SLRTLSEFVVVNGSGKYGSKACN--LEGLRYL------------------NHLRGSLKIRGLGN 721 (976)
Q Consensus 664 ~~l~-~lp~~i~~l~-~L~~L~~~~~~~~~~~~~~~~~~--l~~L~~L------------------~~L~~~l~i~~l~~ 721 (976)
|.+. .+|..+..++ +|+.|++..+. ..+..+..... +..|+.| ..|+ .+.+.+..
T Consensus 353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~-~L~Ls~N~- 429 (768)
T 3rgz_A 353 NEFSGELPESLTNLSASLLTLDLSSNN-FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV-SLHLSFNY- 429 (768)
T ss_dssp SEEEECCCTTHHHHTTTCSEEECCSSE-EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCC-EEECCSSE-
T ss_pred CccCccccHHHHhhhcCCcEEEccCCC-cCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCC-EEECcCCc-
Confidence 4444 4444444444 44444432221 11101110100 1111111 1111 11111000
Q ss_pred CCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEeecCCCCCCcccccccccccE
Q 002044 722 VTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKK 801 (976)
Q Consensus 722 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~ 801 (976)
+.......+..+++|+.|+++.+... ..++..+..+++|+.|++++|.+....|.++..+++|+.
T Consensus 430 ---l~~~~p~~l~~l~~L~~L~L~~n~l~------------~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 494 (768)
T 3rgz_A 430 ---LSGTIPSSLGSLSKLRDLKLWLNMLE------------GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494 (768)
T ss_dssp ---EESCCCGGGGGCTTCCEEECCSSCCC------------SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred ---ccCcccHHHhcCCCCCEEECCCCccc------------CcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCE
Confidence 00011122334445555555544322 012223344556666666666665444666666666666
Q ss_pred EEEeCCCCCCCCC-CCCCCCCcceeeccccccceEeCccccCCCcCcccccccCCCCCCCCCc-----------------
Q 002044 802 LRLLFCDKCEVMP-ALGILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIHIQDGSMSSSSSSS----------------- 863 (976)
Q Consensus 802 L~L~~~~~~~~l~-~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~----------------- 863 (976)
|+|++|.....+| .++.+++|++|+|++|.....++..+.....+..+++++|.+.+..+..
T Consensus 495 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~ 574 (768)
T 3rgz_A 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCE
T ss_pred EEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccc
Confidence 6666665554444 3556666666666666544455555544445555555544332111100
Q ss_pred -------------------------------------------------cCccCCccceeeecccccccccccCCCcccc
Q 002044 864 -------------------------------------------------ANIAFPKLKELKFFCLDEWEEWDFGKEDITI 894 (976)
Q Consensus 864 -------------------------------------------------~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~ 894 (976)
....|..+..|...++.++......|..++.
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~ 654 (768)
T 3rgz_A 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654 (768)
T ss_dssp EEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG
T ss_pred ccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhc
Confidence 0012223333333333444444455666888
Q ss_pred CCCcceEeeecCCCCCCCCcCCCCCCCCCeEEEccCcchHHhhccCCCCCcccccCCCceeecccccccCcchhhc
Q 002044 895 MPQLSSMKISYCSKLNSLPDQLLQSTTLEELEIIRCPILEERFKKDTGEDWSKITHIPKIKIHGEYVQGSPPLLKS 970 (976)
Q Consensus 895 l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~n~~~~~~~~~~~ 970 (976)
+++|+.|++++|.....+|..+.++++|+.|++++| ++....+..+..+..+.++++++|.+.|.+|....
T Consensus 655 l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N-----~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~ 725 (768)
T 3rgz_A 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN-----KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 725 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS-----CCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSS
T ss_pred cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCC-----cccCcCChHHhCCCCCCEEECcCCcccccCCCchh
Confidence 999999999999866689999999999999999999 67777778888899999999999999999997543
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=8.4e-25 Score=262.47 Aligned_cols=402 Identities=17% Similarity=0.138 Sum_probs=241.3
Q ss_pred ccCceeEEEEEccCCCCCcc-cccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCccc-Cc
Q 002044 526 SQEKLRHLMLVLGYKNSFPV-SIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEI-PK 603 (976)
Q Consensus 526 ~~~~~r~l~~~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~l-p~ 603 (976)
.+..++++.+..+....++. .+.++++|++|++++|.+....+ ..|.++++|++|+|+ ++.+..+ |.
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~-----~~~~~l~~L~~L~Ls------~n~l~~~~p~ 98 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED-----KAWHGLHHLSNLILT------GNPIQSFSPG 98 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-----TTTTTCTTCCEEECT------TCCCCCCCTT
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCH-----HHhhchhhcCEeECC------CCcccccChh
Confidence 45788999998887776543 67789999999999998654332 237899999999999 5566666 78
Q ss_pred cccCCCccceecC--ccccccC-ccccccCCccEEecCCCCCCc--ccchhhcccCCCcEEEecccccccCc-ccccCCC
Q 002044 604 GIKKLRHLRYLKL--YLVEKLP-ETCCELLNLQTLNMCGSPGLK--RLPQGIGKLINLRHLMFEVDYLEYMP-KGIERLT 677 (976)
Q Consensus 604 ~i~~L~~Lr~L~L--~~~~~lp-~~i~~L~~L~~L~l~~~~~l~--~lp~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~ 677 (976)
.++++.+|++|++ +.+..+| ..++++.+|++|++++|. +. .+|..++++++|++|+++.|.+..++ ..++.++
T Consensus 99 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 177 (606)
T 3vq2_A 99 SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177 (606)
T ss_dssp SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHH
T ss_pred hcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCcceecChhhhhhhh
Confidence 8999999999999 5677776 679999999999999997 55 57999999999999999888887765 4466666
Q ss_pred CCCc----CCceEEecCCCCCCCcccccccccccc-------------------cCC-CceEEcCcC-------------
Q 002044 678 SLRT----LSEFVVVNGSGKYGSKACNLEGLRYLN-------------------HLR-GSLKIRGLG------------- 720 (976)
Q Consensus 678 ~L~~----L~~~~~~~~~~~~~~~~~~l~~L~~L~-------------------~L~-~~l~i~~l~------------- 720 (976)
+|+. |++..+. .. ..+........|+.|. .+. ..+.+..+.
T Consensus 178 ~L~~~l~~L~l~~n~-l~-~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~ 255 (606)
T 3vq2_A 178 ENPQVNLSLDMSLNP-ID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255 (606)
T ss_dssp HCTTCCCEEECTTCC-CC-EECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGG
T ss_pred ccccccceeeccCCC-cc-eeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHh
Confidence 5553 3221111 11 1111111111121110 000 000000000
Q ss_pred --------------CCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEeecCCC
Q 002044 721 --------------NVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITGFKGR 786 (976)
Q Consensus 721 --------------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 786 (976)
.......... .+..+.+|+.|+++.+.... ...+..+++|+.|++++|...
T Consensus 256 ~~l~~l~l~~l~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~--------------l~~l~~~~~L~~L~l~~n~l~ 320 (606)
T 3vq2_A 256 EGLCDVTIDEFRLTYTNDFSDDIV-KFHCLANVSAMSLAGVSIKY--------------LEDVPKHFKWQSLSIIRCQLK 320 (606)
T ss_dssp TTGGGSEEEEEEECCCTTCCGGGG-SCGGGTTCSEEEEESCCCCC--------------CCCCCTTCCCSEEEEESCCCS
T ss_pred hhhhhccHhheecccccccccccc-ccccCCCCCEEEecCccchh--------------hhhccccccCCEEEcccccCc
Confidence 0000111111 14556677777777654321 114556677888888888775
Q ss_pred CCCcccccccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceEe---CccccCCCcCcccccccCC--------
Q 002044 787 TLMLSWIVSLNKLKKLRLLFCDKCEVMPALGILPSLEVLKIRFMKSVKRV---GNEFLGTEISDHIHIQDGS-------- 855 (976)
Q Consensus 787 ~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~---~~~~~~~~~~~~l~l~~~~-------- 855 (976)
.+ |.+ .+++|+.|++++|...... .++.+++|++|++++|. +..+ +..+.....+..++++.|.
T Consensus 321 ~l-p~~--~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 395 (606)
T 3vq2_A 321 QF-PTL--DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANF 395 (606)
T ss_dssp SC-CCC--CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCSEEEECCCC
T ss_pred cc-ccC--CCCccceeeccCCcCccch-hhccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCccccchhhc
Confidence 54 654 7777888888777544433 44566666666666654 3222 2333333344444444443
Q ss_pred ---------------CCCCCCCccCccCCccceeeecccccccccccCCCccccCCCcceEeeecCCCCC-CCCcCCCCC
Q 002044 856 ---------------MSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLN-SLPDQLLQS 919 (976)
Q Consensus 856 ---------------~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~-~lp~~l~~l 919 (976)
+...........+++|+.|.+.++. .....+..+..+++|+.|++++|.... .+|..+.++
T Consensus 396 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 472 (606)
T 3vq2_A 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN---TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT 472 (606)
T ss_dssp TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC---CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC---CCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccC
Confidence 3222221112234444444444322 112223335567777777777765333 256667777
Q ss_pred CCCCeEEEccCcchHHhhccCCCCCcccccCCCceeecccccccCcchhh
Q 002044 920 TTLEELEIIRCPILEERFKKDTGEDWSKITHIPKIKIHGEYVQGSPPLLK 969 (976)
Q Consensus 920 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~n~~~~~~~~~~ 969 (976)
++|+.|++++| .+....+..+..++++..+++++|.+++.+|..+
T Consensus 473 ~~L~~L~Ls~n-----~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 517 (606)
T 3vq2_A 473 TNLTFLDLSKC-----QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY 517 (606)
T ss_dssp TTCCEEECTTS-----CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGT
T ss_pred CCCCEEECCCC-----cCCccChhhhcccccCCEEECCCCcCCCcCHHHc
Confidence 77777777777 4444455566777888888888888887766544
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=5e-25 Score=268.04 Aligned_cols=389 Identities=14% Similarity=0.123 Sum_probs=234.8
Q ss_pred CceeEEEEEccCCC-CCcccccccCceeEEEe-cCcccchhhhHH-----------------------------------
Q 002044 528 EKLRHLMLVLGYKN-SFPVSIFYARKLRSLML-SYNTLNQKASAQ----------------------------------- 570 (976)
Q Consensus 528 ~~~r~l~~~~~~~~-~~~~~~~~~~~Lr~L~l-~~~~~~~~~~~~----------------------------------- 570 (976)
.++..+.+.++... .+|..+.++++|++|++ ++|.+.+.....
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 56777777776654 45788899999999999 666543320000
Q ss_pred -H-----------------------------------HHHHHhcCCCcceEEecCcccccCCCCcc--------------
Q 002044 571 -V-----------------------------------LQGLFDQLTGLRVLRIEGMKSLIGSGTNE-------------- 600 (976)
Q Consensus 571 -~-----------------------------------~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~-------------- 600 (976)
. +|..+.++++|++|+|+ ++.+..
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls------~N~Lsg~~i~~~~~~~s~n~ 476 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFA------NSPFTYDNIAVDWEDANSDY 476 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEE------SCCCCGGGBSSSCSCTTSHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECc------CCcCCCCccccccccccccc
Confidence 0 23346778888888888 444444
Q ss_pred ----cCcccc--CCCccceecC--c-cccccCccccccCCccEEecCCCCCCc--ccchhhcccC-------CCcEEEec
Q 002044 601 ----IPKGIK--KLRHLRYLKL--Y-LVEKLPETCCELLNLQTLNMCGSPGLK--RLPQGIGKLI-------NLRHLMFE 662 (976)
Q Consensus 601 ----lp~~i~--~L~~Lr~L~L--~-~~~~lp~~i~~L~~L~~L~l~~~~~l~--~lp~~i~~l~-------~L~~L~l~ 662 (976)
+|..++ ++++|++|+| + ....+|..+++|++|++|+|++|..+. .+|..+++++ +|++|+++
T Consensus 477 ~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls 556 (876)
T 4ecn_A 477 AKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556 (876)
T ss_dssp HHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECC
T ss_pred ccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEee
Confidence 787777 8888888888 2 256678888888888888888886344 4777777766 88888888
Q ss_pred ccccccCcc--cccCCCCCCcCCceEEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCCCCC-C
Q 002044 663 VDYLEYMPK--GIERLTSLRTLSEFVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKN-L 739 (976)
Q Consensus 663 ~~~l~~lp~--~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~-L 739 (976)
+|.+..+|. .++++++|+.|++..+. .. ..| .+..+.+|+ .+.+.+.. +. .....+..+.+ |
T Consensus 557 ~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~-~lp-------~~~~L~~L~-~L~Ls~N~-l~----~lp~~l~~l~~~L 621 (876)
T 4ecn_A 557 YNNLEEFPASASLQKMVKLGLLDCVHNK-VR-HLE-------AFGTNVKLT-DLKLDYNQ-IE----EIPEDFCAFTDQV 621 (876)
T ss_dssp SSCCCBCCCHHHHTTCTTCCEEECTTSC-CC-BCC-------CCCTTSEES-EEECCSSC-CS----CCCTTSCEECTTC
T ss_pred CCcCCccCChhhhhcCCCCCEEECCCCC-cc-cch-------hhcCCCcce-EEECcCCc-cc----cchHHHhhccccC
Confidence 888888887 78888888887654432 21 222 222222222 23332211 11 11223555666 7
Q ss_pred ceEEEEecCCCCCCCCccchhhHHHHhhcCCCC--CCCceEEEeecCCCCCCccc---cc--ccccccEEEEeCCCCCCC
Q 002044 740 VVLILRFNKEAPVGMKDENEANHEAVCEALQPP--PNLESLQITGFKGRTLMLSW---IV--SLNKLKKLRLLFCDKCEV 812 (976)
Q Consensus 740 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~L~~L~L~~~~~~~~~p~~---~~--~l~~L~~L~L~~~~~~~~ 812 (976)
+.|+++.+... .++..+... ++|+.|++++|.+....|.+ +. .+++|+.|+|++|... .
T Consensus 622 ~~L~Ls~N~L~-------------~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~ 687 (876)
T 4ecn_A 622 EGLGFSHNKLK-------------YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-K 687 (876)
T ss_dssp CEEECCSSCCC-------------SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-S
T ss_pred CEEECcCCCCC-------------cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-c
Confidence 77777766532 112233333 34778888877765543322 22 3347778888777544 4
Q ss_pred CCC--CCCCCCcceeeccccccceEeCccccCCC--------cCcccccccCCCCCCCCCccCccCCccceeeecccccc
Q 002044 813 MPA--LGILPSLEVLKIRFMKSVKRVGNEFLGTE--------ISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEW 882 (976)
Q Consensus 813 l~~--l~~L~~L~~L~L~~~~~l~~~~~~~~~~~--------~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l 882 (976)
+|. +..+++|+.|+|++|. +..++...+... .+..+++++|.+...........+++|+.|.+.+.. +
T Consensus 688 lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~-L 765 (876)
T 4ecn_A 688 FPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC-F 765 (876)
T ss_dssp CCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSC-C
T ss_pred cCHHHHccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCC-C
Confidence 443 2367778888887775 556665544332 566667777766522211101256677777776532 2
Q ss_pred cccccCCCccccCCCcceEeeec------CCCCCCCCcCCCCCCCCCeEEEccCcchHHhhccCCCCCcccccCCCceee
Q 002044 883 EEWDFGKEDITIMPQLSSMKISY------CSKLNSLPDQLLQSTTLEELEIIRCPILEERFKKDTGEDWSKITHIPKIKI 956 (976)
Q Consensus 883 ~~~~~~~~~~~~l~~L~~L~l~~------c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l~~l~~ 956 (976)
.. .|..+..+++|+.|++++ |.....+|..+.++++|+.|++++| .+. ..+..+. +.+..+++
T Consensus 766 ~~---lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-----~L~-~Ip~~l~--~~L~~LdL 834 (876)
T 4ecn_A 766 SS---FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-----DIR-KVDEKLT--PQLYILDI 834 (876)
T ss_dssp SS---CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-----CCC-BCCSCCC--SSSCEEEC
T ss_pred Cc---cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-----CCC-ccCHhhc--CCCCEEEC
Confidence 22 244456777777777765 4444566777777777777777777 332 2222232 47777777
Q ss_pred cccccccC
Q 002044 957 HGEYVQGS 964 (976)
Q Consensus 957 ~~n~~~~~ 964 (976)
++|.+...
T Consensus 835 s~N~l~~i 842 (876)
T 4ecn_A 835 ADNPNISI 842 (876)
T ss_dssp CSCTTCEE
T ss_pred CCCCCCcc
Confidence 77776543
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=6.5e-25 Score=263.11 Aligned_cols=388 Identities=15% Similarity=0.129 Sum_probs=267.9
Q ss_pred CceeEEEEEccCCC-CCcccccccCceeEEEecCcccc------h-----------------------------------
Q 002044 528 EKLRHLMLVLGYKN-SFPVSIFYARKLRSLMLSYNTLN------Q----------------------------------- 565 (976)
Q Consensus 528 ~~~r~l~~~~~~~~-~~~~~~~~~~~Lr~L~l~~~~~~------~----------------------------------- 565 (976)
.+++.+.+..+... .+|..+.++++|++|++++|.+. +
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 46777777766554 45778899999999999998540 0
Q ss_pred --------------------------------hhhHHHHHHHHhcCCCcceEEecCcccccCCCCcc-------------
Q 002044 566 --------------------------------KASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNE------------- 600 (976)
Q Consensus 566 --------------------------------~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~------------- 600 (976)
..... +|..+.++++|++|+|+ ++.+..
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls------~n~l~~~~~~~~~~~~~~~ 233 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMG------NSPFVAENICEAWENENSE 233 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEE------SCCCCGGGBSSSCSCTTSH
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECc------CCccccccccccccccccc
Confidence 00001 33447889999999999 455555
Q ss_pred -----cCcccc--CCCccceecCc---cccccCccccccCCccEEecCCCCCCc--ccchhhccc------CCCcEEEec
Q 002044 601 -----IPKGIK--KLRHLRYLKLY---LVEKLPETCCELLNLQTLNMCGSPGLK--RLPQGIGKL------INLRHLMFE 662 (976)
Q Consensus 601 -----lp~~i~--~L~~Lr~L~L~---~~~~lp~~i~~L~~L~~L~l~~~~~l~--~lp~~i~~l------~~L~~L~l~ 662 (976)
+|..++ ++++|++|+|+ ....+|+.++++++|++|++++|..+. .+|..++++ ++|++|+++
T Consensus 234 ~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~ 313 (636)
T 4eco_A 234 YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313 (636)
T ss_dssp HHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECC
T ss_pred hhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECC
Confidence 899999 99999999992 256789999999999999999997454 599999887 999999999
Q ss_pred ccccccCcc--cccCCCCCCcCCceEEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCCCCC-C
Q 002044 663 VDYLEYMPK--GIERLTSLRTLSEFVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKN-L 739 (976)
Q Consensus 663 ~~~l~~lp~--~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~-L 739 (976)
+|.+..+|. .++.+++|+.|++..+. ..+..| ....+..|+.| .+.+.. +. .....+..+.+ |
T Consensus 314 ~n~l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip-~~~~l~~L~~L-------~L~~N~-l~----~lp~~l~~l~~~L 379 (636)
T 4eco_A 314 YNNLKTFPVETSLQKMKKLGMLECLYNQ-LEGKLP-AFGSEIKLASL-------NLAYNQ-IT----EIPANFCGFTEQV 379 (636)
T ss_dssp SSCCSSCCCHHHHTTCTTCCEEECCSCC-CEEECC-CCEEEEEESEE-------ECCSSE-EE----ECCTTSEEECTTC
T ss_pred CCcCCccCchhhhccCCCCCEEeCcCCc-Cccchh-hhCCCCCCCEE-------ECCCCc-cc----cccHhhhhhcccC
Confidence 999999998 89999999999765543 332333 22333333333 222110 00 11233566777 9
Q ss_pred ceEEEEecCCCCCCCCccchhhHHHHhhcCCC--CCCCceEEEeecCCCCCCccccc-------ccccccEEEEeCCCCC
Q 002044 740 VVLILRFNKEAPVGMKDENEANHEAVCEALQP--PPNLESLQITGFKGRTLMLSWIV-------SLNKLKKLRLLFCDKC 810 (976)
Q Consensus 740 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~L~~L~L~~~~~~~~~p~~~~-------~l~~L~~L~L~~~~~~ 810 (976)
+.|+++++... .++..+.. +++|+.|++++|.+....|.++. .+++|+.|+|++|...
T Consensus 380 ~~L~Ls~N~l~-------------~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~ 446 (636)
T 4eco_A 380 ENLSFAHNKLK-------------YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446 (636)
T ss_dssp CEEECCSSCCS-------------SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC
T ss_pred cEEEccCCcCc-------------ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC
Confidence 99999887533 12233333 34789999999888776677777 6778999999988654
Q ss_pred CCCCC--CCCCCCcceeeccccccceEeCccccCCC--------cCcccccccCCCCCCCCCccCccCCccceeeecccc
Q 002044 811 EVMPA--LGILPSLEVLKIRFMKSVKRVGNEFLGTE--------ISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLD 880 (976)
Q Consensus 811 ~~l~~--l~~L~~L~~L~L~~~~~l~~~~~~~~~~~--------~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~ 880 (976)
.+|. +..+++|++|+|++|. +..++...+... .+..+++++|.+...........+++|+.|.+.+..
T Consensus 447 -~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~ 524 (636)
T 4eco_A 447 -KFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS 524 (636)
T ss_dssp -SCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSC
T ss_pred -cCCHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCC
Confidence 4554 4468889999998887 556766554432 567777888777632211111257788888877632
Q ss_pred cccccccCCCccccCCCcceEeeec------CCCCCCCCcCCCCCCCCCeEEEccCcchHHhhccCCCCCcccccCCCce
Q 002044 881 EWEEWDFGKEDITIMPQLSSMKISY------CSKLNSLPDQLLQSTTLEELEIIRCPILEERFKKDTGEDWSKITHIPKI 954 (976)
Q Consensus 881 ~l~~~~~~~~~~~~l~~L~~L~l~~------c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l~~l 954 (976)
+.. .|..+..+++|+.|++++ |.....+|..+.++++|++|++++| .+.. .+..+. +.+..+
T Consensus 525 -l~~---ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-----~l~~-ip~~~~--~~L~~L 592 (636)
T 4eco_A 525 -FSK---FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-----DIRK-VNEKIT--PNISVL 592 (636)
T ss_dssp -CSS---CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-----CCCB-CCSCCC--TTCCEE
T ss_pred -CCC---cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-----cCCc-cCHhHh--CcCCEE
Confidence 222 344566788888888854 4445678888888888888888888 4422 233333 688888
Q ss_pred eeccccccc
Q 002044 955 KIHGEYVQG 963 (976)
Q Consensus 955 ~~~~n~~~~ 963 (976)
++++|.+..
T Consensus 593 ~Ls~N~l~~ 601 (636)
T 4eco_A 593 DIKDNPNIS 601 (636)
T ss_dssp ECCSCTTCE
T ss_pred ECcCCCCcc
Confidence 888886653
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=2.3e-25 Score=273.59 Aligned_cols=412 Identities=15% Similarity=0.122 Sum_probs=253.5
Q ss_pred CceeEEEEEccCCCCCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCc-ccCcccc
Q 002044 528 EKLRHLMLVLGYKNSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTN-EIPKGIK 606 (976)
Q Consensus 528 ~~~r~l~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~-~lp~~i~ 606 (976)
.+++++.+..+...... ....+++|++|++++|.+.+.. +. +.++++|++|++++| .+. .+|..++
T Consensus 178 ~~L~~L~Ls~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~-----~~-l~~l~~L~~L~Ls~n------~l~~~~~~~l~ 244 (768)
T 3rgz_A 178 GELKHLAISGNKISGDV-DVSRCVNLEFLDVSSNNFSTGI-----PF-LGDCSALQHLDISGN------KLSGDFSRAIS 244 (768)
T ss_dssp TTCCEEECCSSEEESCC-BCTTCTTCCEEECCSSCCCSCC-----CB-CTTCCSCCEEECCSS------CCCSCHHHHTT
T ss_pred CCCCEEECCCCcccccC-CcccCCcCCEEECcCCcCCCCC-----cc-cccCCCCCEEECcCC------cCCCcccHHHh
Confidence 45666666665544322 2367788888888888765422 22 678888999998843 333 4566777
Q ss_pred CCCccceecC--cccc-----------------------ccCcccccc-CCccEEecCCCCCCcccchhhcccCCCcEEE
Q 002044 607 KLRHLRYLKL--YLVE-----------------------KLPETCCEL-LNLQTLNMCGSPGLKRLPQGIGKLINLRHLM 660 (976)
Q Consensus 607 ~L~~Lr~L~L--~~~~-----------------------~lp~~i~~L-~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~ 660 (976)
++++|++|++ +.+. .+|..+..+ ++|++|++++|.....+|..++++++|++|+
T Consensus 245 ~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 324 (768)
T 3rgz_A 245 TCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324 (768)
T ss_dssp TCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEE
T ss_pred cCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEE
Confidence 7777777777 2222 334444332 5555555555542224455555555555555
Q ss_pred ecccccc-cCccc-ccCCCCCCcCCceEEecCCCCCCCcccccc-cccccccCCCceEEcC--------cCCCCC-----
Q 002044 661 FEVDYLE-YMPKG-IERLTSLRTLSEFVVVNGSGKYGSKACNLE-GLRYLNHLRGSLKIRG--------LGNVTD----- 724 (976)
Q Consensus 661 l~~~~l~-~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~-~L~~L~~L~~~l~i~~--------l~~~~~----- 724 (976)
++.|.+. .+|.. ++.+++|+.|++..+. ..+..|.....+. .|+.|.--...+.-.. +.+++.
T Consensus 325 L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~ 403 (768)
T 3rgz_A 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNE-FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403 (768)
T ss_dssp CCSSEEEEECCHHHHTTCTTCCEEECCSSE-EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS
T ss_pred CCCCcccCcCCHHHHhcCCCCCEEeCcCCc-cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC
Confidence 5555544 45543 5555555555443322 1112222222222 2222210000000000 000000
Q ss_pred --hhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEeecCCCCCCcccccccccccEE
Q 002044 725 --IDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKL 802 (976)
Q Consensus 725 --~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L 802 (976)
+.......+..+++|+.|+++.+... ...+..+..+++|+.|++++|......|..+..+++|+.|
T Consensus 404 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~------------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 471 (768)
T 3rgz_A 404 NGFTGKIPPTLSNCSELVSLHLSFNYLS------------GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471 (768)
T ss_dssp SEEEEECCGGGGGCTTCCEEECCSSEEE------------SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred CccccccCHHHhcCCCCCEEECcCCccc------------CcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence 00011123445556666666554321 1123345566788888888888876668888888888999
Q ss_pred EEeCCCCCCCCC-CCCCCCCcceeeccccccceEeCccccCCCcCcccccccCCCCCCCCCccCccCCccceeeeccccc
Q 002044 803 RLLFCDKCEVMP-ALGILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDE 881 (976)
Q Consensus 803 ~L~~~~~~~~l~-~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~ 881 (976)
+|++|.....+| .++.+++|++|+|++|.....++..+.....+..+++++|.+.+..+. ....+++|+.|++.+++-
T Consensus 472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA-ELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG-GGGGCTTCCEEECCSSEE
T ss_pred EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH-HHcCCCCCCEEECCCCcc
Confidence 998887665555 477888999999998885556777777777788888888887654433 234677888888775431
Q ss_pred ccccc-------------------------------------------------------------------cCCCcccc
Q 002044 882 WEEWD-------------------------------------------------------------------FGKEDITI 894 (976)
Q Consensus 882 l~~~~-------------------------------------------------------------------~~~~~~~~ 894 (976)
...++ ..+..+..
T Consensus 551 ~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~ 630 (768)
T 3rgz_A 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630 (768)
T ss_dssp ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS
T ss_pred CCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhc
Confidence 10000 01123456
Q ss_pred CCCcceEeeecCCCCCCCCcCCCCCCCCCeEEEccCcchHHhhccCCCCCcccccCCCceeecccccccCcchhhcc
Q 002044 895 MPQLSSMKISYCSKLNSLPDQLLQSTTLEELEIIRCPILEERFKKDTGEDWSKITHIPKIKIHGEYVQGSPPLLKSI 971 (976)
Q Consensus 895 l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~n~~~~~~~~~~~~ 971 (976)
+++|+.|++++|.....+|..+.++++|+.|++++| .+....+..+..++.+..+++++|.++|.+|..++-
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N-----~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~ 702 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN-----DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS-----CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCC-----ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhC
Confidence 789999999999866789999999999999999999 777777888899999999999999999999976543
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=2.5e-24 Score=258.33 Aligned_cols=409 Identities=13% Similarity=0.039 Sum_probs=234.9
Q ss_pred ccCceeEEEEEccCCCCC-cccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCccc-Cc
Q 002044 526 SQEKLRHLMLVLGYKNSF-PVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEI-PK 603 (976)
Q Consensus 526 ~~~~~r~l~~~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~l-p~ 603 (976)
.+..++++.+..+....+ +..+..+++|++|++++|.+....+ ..|.++++|++|+|+ ++.+..+ |.
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-----~~~~~l~~L~~L~Ls------~n~l~~~~~~ 99 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE-----DTFQSQHRLDTLVLT------ANPLIFMAET 99 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECT-----TTTTTCTTCCEEECT------TCCCSEECTT
T ss_pred CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeCh-----hhccCccccCeeeCC------CCcccccChh
Confidence 566789999988887765 4577889999999999998755333 338899999999999 5555554 67
Q ss_pred cccCCCccceecC--cccccc-CccccccCCccEEecCCCCCCcccc-hhhcccCCCcEEEecccccccCc-ccccCCCC
Q 002044 604 GIKKLRHLRYLKL--YLVEKL-PETCCELLNLQTLNMCGSPGLKRLP-QGIGKLINLRHLMFEVDYLEYMP-KGIERLTS 678 (976)
Q Consensus 604 ~i~~L~~Lr~L~L--~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~ 678 (976)
.++++.+|++|++ +.+..+ |..++++++|++|++++|. +..++ ..+..+++|++|++++|.+..++ ..++.+++
T Consensus 100 ~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 178 (606)
T 3t6q_A 100 ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178 (606)
T ss_dssp TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTT
T ss_pred hhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhcc
Confidence 8999999999999 567777 5678999999999999998 66652 33445999999999888888774 55788888
Q ss_pred CC--cCCceEEecCCCCCCCcccccccccccc---------------cCC---------------------------Cce
Q 002044 679 LR--TLSEFVVVNGSGKYGSKACNLEGLRYLN---------------HLR---------------------------GSL 714 (976)
Q Consensus 679 L~--~L~~~~~~~~~~~~~~~~~~l~~L~~L~---------------~L~---------------------------~~l 714 (976)
|+ .|++..+. ..+..+. ......++.|. .+. .++
T Consensus 179 L~~l~L~l~~n~-l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L 256 (606)
T 3t6q_A 179 ATNLSLNLNGND-IAGIEPG-AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256 (606)
T ss_dssp CCSEEEECTTCC-CCEECTT-TTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEE
T ss_pred cceeEEecCCCc-cCccChh-HhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCce
Confidence 88 33322211 1111111 11111111110 000 000
Q ss_pred EEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEeecCCCCCCccccc
Q 002044 715 KIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITGFKGRTLMLSWIV 794 (976)
Q Consensus 715 ~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~ 794 (976)
....+.+. .+.......+..+++|+.|+++++... .++..+..+++|+.|++++|.+....|..+.
T Consensus 257 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~-------------~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 322 (606)
T 3t6q_A 257 ESINLQKH-YFFNISSNTFHCFSGLQELDLTATHLS-------------ELPSGLVGLSTLKKLVLSANKFENLCQISAS 322 (606)
T ss_dssp EEEECTTC-CCSSCCTTTTTTCTTCSEEECTTSCCS-------------CCCSSCCSCTTCCEEECTTCCCSBGGGGCGG
T ss_pred eEEEeecC-ccCccCHHHhccccCCCEEeccCCccC-------------CCChhhcccccCCEEECccCCcCcCchhhhh
Confidence 00000000 000111122555677777777765432 1233455566677777766666555455566
Q ss_pred ccccccEEEEeCCCCCCCCCC--CCCCCCcceeeccccccceEe--CccccCCCcCcccccccCCCC-------------
Q 002044 795 SLNKLKKLRLLFCDKCEVMPA--LGILPSLEVLKIRFMKSVKRV--GNEFLGTEISDHIHIQDGSMS------------- 857 (976)
Q Consensus 795 ~l~~L~~L~L~~~~~~~~l~~--l~~L~~L~~L~L~~~~~l~~~--~~~~~~~~~~~~l~l~~~~~~------------- 857 (976)
.+++|+.|++++|.....++. ++.+++|++|++++|...... +..+.....+..++++.|.+.
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 402 (606)
T 3t6q_A 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL 402 (606)
T ss_dssp GCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTC
T ss_pred ccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccC
Confidence 666666666666654433332 555666666666655422111 223333344444455444432
Q ss_pred -----------CCCCCccCccCCccceeeecccccccccccCCCccccCCCcceEeeecCCCCCC-C--CcCCCCCCCCC
Q 002044 858 -----------SSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNS-L--PDQLLQSTTLE 923 (976)
Q Consensus 858 -----------~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~-l--p~~l~~l~~L~ 923 (976)
..........+++|+.|.+.++. .....+..+..+++|++|++++|..-.. + +..+..+++|+
T Consensus 403 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~ 479 (606)
T 3t6q_A 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL---LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479 (606)
T ss_dssp SEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC---CBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCC
T ss_pred CeEECCCCcCCCcccchhhhCcccCCEEECCCCc---cCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCcc
Confidence 22211112233444444443321 1111222344556666666666542210 1 13345556666
Q ss_pred eEEEccCcchHHhhccCCCCCcccccCCCceeecccccccCcchhhc
Q 002044 924 ELEIIRCPILEERFKKDTGEDWSKITHIPKIKIHGEYVQGSPPLLKS 970 (976)
Q Consensus 924 ~L~l~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~n~~~~~~~~~~~ 970 (976)
.|++++| .+....+..+..++++..+++++|.+++.+|..+.
T Consensus 480 ~L~Ls~n-----~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 521 (606)
T 3t6q_A 480 ILVLSFC-----DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS 521 (606)
T ss_dssp EEECTTS-----CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGT
T ss_pred EEECCCC-----ccCccChhhhccccCCCEEECCCCccCcCChhHhC
Confidence 6666666 44444556677778888888888888877765543
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=5.3e-24 Score=255.54 Aligned_cols=408 Identities=17% Similarity=0.158 Sum_probs=261.7
Q ss_pred EEEEccCCCCCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCccc-CccccCCCcc
Q 002044 533 LMLVLGYKNSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEI-PKGIKKLRHL 611 (976)
Q Consensus 533 l~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~l-p~~i~~L~~L 611 (976)
+.........+|..+ .+++++|++++|.+...... .|.++++|++|+|+ ++.+..+ |..++++++|
T Consensus 16 ~~c~~~~l~~ip~~~--~~~l~~L~Ls~n~l~~~~~~-----~~~~l~~L~~L~Ls------~n~l~~i~~~~~~~l~~L 82 (606)
T 3vq2_A 16 YQCMDQKLSKVPDDI--PSSTKNIDLSFNPLKILKSY-----SFSNFSELQWLDLS------RCEIETIEDKAWHGLHHL 82 (606)
T ss_dssp EECTTSCCSSCCTTS--CTTCCEEECTTSCCCEECTT-----TTTTCTTCCEEECT------TCCCCEECTTTTTTCTTC
T ss_pred eEccCCCcccCCCCC--CCCcCEEECCCCCcCEeChh-----hccCCccCcEEeCC------CCcccccCHHHhhchhhc
Confidence 333344455556544 37899999999987654332 38899999999999 5566666 5678999999
Q ss_pred ceecC--cccccc-CccccccCCccEEecCCCCCCcccc-hhhcccCCCcEEEecccccc--cCcccccCCCCCCcCCce
Q 002044 612 RYLKL--YLVEKL-PETCCELLNLQTLNMCGSPGLKRLP-QGIGKLINLRHLMFEVDYLE--YMPKGIERLTSLRTLSEF 685 (976)
Q Consensus 612 r~L~L--~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~~~ 685 (976)
++|+| +.+..+ |..++++++|++|++++|. +..+| ..++++++|++|+++.|.+. .+|..++++++|+.|++.
T Consensus 83 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls 161 (606)
T 3vq2_A 83 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161 (606)
T ss_dssp CEEECTTCCCCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECC
T ss_pred CEeECCCCcccccChhhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEcc
Confidence 99999 567777 7889999999999999998 76666 67999999999999998887 478999999999999765
Q ss_pred EEecCCCCCCCcccccccccccccCCCceEEcCc--------------------CCCCChhhHHhccCCCCCCCceEEEE
Q 002044 686 VVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGL--------------------GNVTDIDEAKSAHLDKKKNLVVLILR 745 (976)
Q Consensus 686 ~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l--------------------~~~~~~~~~~~~~l~~~~~L~~L~l~ 745 (976)
.+. .....+.....+..++. ....+.+... .............+..+.+|+.+.+.
T Consensus 162 ~n~-l~~~~~~~~~~l~~L~~---~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~ 237 (606)
T 3vq2_A 162 YNY-IQTITVNDLQFLRENPQ---VNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI 237 (606)
T ss_dssp SSC-CCEECTTTTHHHHHCTT---CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEE
T ss_pred CCc-ceecChhhhhhhhcccc---ccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccccccccccc
Confidence 443 32222222222322221 0001221110 00000011122223344444444444
Q ss_pred ecCCCCCCCCc-c-------------------chhhHHHHhhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEe
Q 002044 746 FNKEAPVGMKD-E-------------------NEANHEAVCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLL 805 (976)
Q Consensus 746 ~~~~~~~~~~~-~-------------------~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~ 805 (976)
........... . ...........+..+++|+.|++.++....+ | ++..+++|+.|+++
T Consensus 238 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~-~l~~~~~L~~L~l~ 315 (606)
T 3vq2_A 238 LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL-E-DVPKHFKWQSLSII 315 (606)
T ss_dssp EECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCC-C-CCCTTCCCSEEEEE
T ss_pred ccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhh-h-hccccccCCEEEcc
Confidence 33211000000 0 0000011112256678999999999998776 6 78899999999999
Q ss_pred CCCCCCCCCCCCCCCCcceeeccccccceEeCccccCCCcCcccccccCCCCCCCC-CccCccCCccceeeecccc----
Q 002044 806 FCDKCEVMPALGILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIHIQDGSMSSSSS-SSANIAFPKLKELKFFCLD---- 880 (976)
Q Consensus 806 ~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~-~~~~~~fp~L~~L~l~~l~---- 880 (976)
+|.. +.+|.+ .+++|++|++++|..+..+ .+.....+..+++++|.+..... ......+++|+.|.+.++.
T Consensus 316 ~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 391 (606)
T 3vq2_A 316 RCQL-KQFPTL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM 391 (606)
T ss_dssp SCCC-SSCCCC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE
T ss_pred cccC-cccccC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccc
Confidence 9977 788888 9999999999999766655 34455667788888877653310 1111234555555544321
Q ss_pred ----------------cccccccCC-CccccCCCcceEeeecCCCCCCCCcCCCCCCCCCeEEEccCcchHHhhcc-CCC
Q 002044 881 ----------------EWEEWDFGK-EDITIMPQLSSMKISYCSKLNSLPDQLLQSTTLEELEIIRCPILEERFKK-DTG 942 (976)
Q Consensus 881 ----------------~l~~~~~~~-~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~ 942 (976)
++......+ ..+..+++|+.|++++|......|..+.++++|+.|++++| .+.. ..+
T Consensus 392 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-----~l~~~~~~ 466 (606)
T 3vq2_A 392 SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN-----SFKDNTLS 466 (606)
T ss_dssp CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC-----EEGGGEEC
T ss_pred hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC-----cCCCcchH
Confidence 111111112 23556777888888877755556667777788888888887 3332 234
Q ss_pred CCcccccCCCceeecccccccCcchhh
Q 002044 943 EDWSKITHIPKIKIHGEYVQGSPPLLK 969 (976)
Q Consensus 943 ~~~~~i~~l~~l~~~~n~~~~~~~~~~ 969 (976)
..+...+++..+++++|.+.+.+|...
T Consensus 467 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 493 (606)
T 3vq2_A 467 NVFANTTNLTFLDLSKCQLEQISWGVF 493 (606)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred HhhccCCCCCEEECCCCcCCccChhhh
Confidence 556777888888888888887776543
No 12
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=7.6e-24 Score=249.04 Aligned_cols=160 Identities=17% Similarity=0.206 Sum_probs=108.7
Q ss_pred cccccccEEEEeCCCCCCCC-CCCCCCCCcceeeccccccceE---eCccccCCCcCcccccccCCCCCCCCCccCccCC
Q 002044 794 VSLNKLKKLRLLFCDKCEVM-PALGILPSLEVLKIRFMKSVKR---VGNEFLGTEISDHIHIQDGSMSSSSSSSANIAFP 869 (976)
Q Consensus 794 ~~l~~L~~L~L~~~~~~~~l-~~l~~L~~L~~L~L~~~~~l~~---~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp 869 (976)
..+++|++|++++|...+.+ ..++.+++|++|++++|. +.. ++..+.....+..+++++|.+....+......++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 46677778888777655533 357778888888888776 332 2233445566777777777776533322233567
Q ss_pred ccceeeecccccccccccCCCccccC-CCcceEeeecCCCCCCCCcCCCCCCCCCeEEEccCcchHHhhccCCCCCcccc
Q 002044 870 KLKELKFFCLDEWEEWDFGKEDITIM-PQLSSMKISYCSKLNSLPDQLLQSTTLEELEIIRCPILEERFKKDTGEDWSKI 948 (976)
Q Consensus 870 ~L~~L~l~~l~~l~~~~~~~~~~~~l-~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i 948 (976)
+|+.|.+.++. +. ...+. .+ ++|+.|++++|. ++.+|..+..+++|++|++++| .+.......+..+
T Consensus 400 ~L~~L~Ls~N~-l~--~~~~~---~l~~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N-----~l~~l~~~~~~~l 467 (520)
T 2z7x_B 400 SLLSLNMSSNI-LT--DTIFR---CLPPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASN-----QLKSVPDGIFDRL 467 (520)
T ss_dssp TCCEEECCSSC-CC--GGGGG---SCCTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS-----CCCCCCTTTTTTC
T ss_pred cCCEEECcCCC-CC--cchhh---hhcccCCEEECCCCc-ccccchhhhcCCCCCEEECCCC-----cCCccCHHHhccC
Confidence 77777776643 11 11121 23 689999999985 7799988888999999999999 4544343347778
Q ss_pred cCCCceeecccccccCcc
Q 002044 949 THIPKIKIHGEYVQGSPP 966 (976)
Q Consensus 949 ~~l~~l~~~~n~~~~~~~ 966 (976)
+++..+++++|.+...++
T Consensus 468 ~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 468 TSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TTCCEEECCSSCBCCCHH
T ss_pred CcccEEECcCCCCcccCC
Confidence 889999999999987655
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=1.2e-24 Score=259.41 Aligned_cols=142 Identities=20% Similarity=0.267 Sum_probs=114.5
Q ss_pred ccCceeEEEEEccCCCCCc-ccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccC-c
Q 002044 526 SQEKLRHLMLVLGYKNSFP-VSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIP-K 603 (976)
Q Consensus 526 ~~~~~r~l~~~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp-~ 603 (976)
.+..++++.+..+....++ ..+..+++|++|++++|.+..... ..|.++++|++|+|+ ++.+..+| .
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~-----~~~~~l~~L~~L~L~------~n~l~~~~~~ 94 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-----GAYQSLSHLSTLILT------GNPIQSLALG 94 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECT-----TTTTTCTTCCEEECT------TCCCCEECTT
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCc-----ccccCchhCCEEeCc------CCcCCccCHh
Confidence 4567899999888776543 467889999999999998654322 337899999999999 56666665 6
Q ss_pred cccCCCccceecC--ccccccCc-cccccCCccEEecCCCCCCcc--cchhhcccCCCcEEEecccccccCc-ccccCCC
Q 002044 604 GIKKLRHLRYLKL--YLVEKLPE-TCCELLNLQTLNMCGSPGLKR--LPQGIGKLINLRHLMFEVDYLEYMP-KGIERLT 677 (976)
Q Consensus 604 ~i~~L~~Lr~L~L--~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~ 677 (976)
.++++.+|++|++ +.+..+|. .++++++|++|++++|. +.. +|..++++++|++|++++|.+..++ ..++.++
T Consensus 95 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 173 (570)
T 2z63_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173 (570)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHH
T ss_pred hhcCccccccccccccccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchh
Confidence 7899999999999 67788875 68999999999999997 554 7899999999999999888887765 4566666
Q ss_pred CC
Q 002044 678 SL 679 (976)
Q Consensus 678 ~L 679 (976)
+|
T Consensus 174 ~L 175 (570)
T 2z63_A 174 QM 175 (570)
T ss_dssp TC
T ss_pred cc
Confidence 66
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=6.1e-25 Score=263.35 Aligned_cols=376 Identities=13% Similarity=0.148 Sum_probs=273.8
Q ss_pred CceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccc-----c-------------------------------
Q 002044 551 RKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSL-----I------------------------------- 594 (976)
Q Consensus 551 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l-----~------------------------------- 594 (976)
.+++.|+++++.+.+..+.. +.++++|++|+|+++... .
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~-----l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~ 155 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDA-----IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPR 155 (636)
T ss_dssp CCEEEEECTTSCCEEEECGG-----GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGG
T ss_pred CCEEEEEecCcccCCcCChH-----HhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCch
Confidence 57999999999887654433 899999999999987420 0
Q ss_pred ------------------------------------CCCCcccCccccCCCccceecC--ccccc---------------
Q 002044 595 ------------------------------------GSGTNEIPKGIKKLRHLRYLKL--YLVEK--------------- 621 (976)
Q Consensus 595 ------------------------------------~~~~~~lp~~i~~L~~Lr~L~L--~~~~~--------------- 621 (976)
.+.+..+|..++++++|++|+| +.+..
T Consensus 156 ~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 156 EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA 235 (636)
T ss_dssp GGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred hhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchh
Confidence 1234458999999999999999 56777
Q ss_pred ---cCcccc--ccCCccEEecCCCCCCcccchhhcccCCCcEEEecccc-ccc--CcccccCC------CCCCcCCceEE
Q 002044 622 ---LPETCC--ELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDY-LEY--MPKGIERL------TSLRTLSEFVV 687 (976)
Q Consensus 622 ---lp~~i~--~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~-l~~--lp~~i~~l------~~L~~L~~~~~ 687 (976)
+|+.++ ++++|++|++++|.....+|..++++++|++|+++.|. +.. +|..++.+ ++|+.|++..+
T Consensus 236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred cccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence 999999 99999999999998778899999999999999998887 774 89888876 89998876554
Q ss_pred ecCCCCCCC--cccccccccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhHHHH
Q 002044 688 VNGSGKYGS--KACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHEAV 765 (976)
Q Consensus 688 ~~~~~~~~~--~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 765 (976)
. .. ..|. ....+..|+. +.+.... + ..... .+..+++|+.|+++++... .+
T Consensus 316 ~-l~-~ip~~~~l~~l~~L~~-------L~L~~N~-l---~g~ip-~~~~l~~L~~L~L~~N~l~-------------~l 368 (636)
T 4eco_A 316 N-LK-TFPVETSLQKMKKLGM-------LECLYNQ-L---EGKLP-AFGSEIKLASLNLAYNQIT-------------EI 368 (636)
T ss_dssp C-CS-SCCCHHHHTTCTTCCE-------EECCSCC-C---EEECC-CCEEEEEESEEECCSSEEE-------------EC
T ss_pred c-CC-ccCchhhhccCCCCCE-------EeCcCCc-C---ccchh-hhCCCCCCCEEECCCCccc-------------cc
Confidence 3 22 3333 2333333333 3322211 1 10111 4566778999999876422 23
Q ss_pred hhcCCCCCC-CceEEEeecCCCCCCccccccc--ccccEEEEeCCCCCCCCCC-CC-------CCCCcceeeccccccce
Q 002044 766 CEALQPPPN-LESLQITGFKGRTLMLSWIVSL--NKLKKLRLLFCDKCEVMPA-LG-------ILPSLEVLKIRFMKSVK 834 (976)
Q Consensus 766 ~~~l~~~~~-L~~L~L~~~~~~~~~p~~~~~l--~~L~~L~L~~~~~~~~l~~-l~-------~L~~L~~L~L~~~~~l~ 834 (976)
+..+..+++ |+.|++++|.+..+ |.++..+ ++|+.|++++|......|. ++ .+++|++|+|++|. ++
T Consensus 369 p~~l~~l~~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~ 446 (636)
T 4eco_A 369 PANFCGFTEQVENLSFAHNKLKYI-PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-IS 446 (636)
T ss_dssp CTTSEEECTTCCEEECCSSCCSSC-CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CC
T ss_pred cHhhhhhcccCcEEEccCCcCccc-chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cC
Confidence 445666778 99999999998866 8888754 4999999999987665543 55 78899999999987 56
Q ss_pred EeCccccC-CCcCcccccccCCCCCCCCCccCcc-------CCccceeeecccccccccccCCCccc--cCCCcceEeee
Q 002044 835 RVGNEFLG-TEISDHIHIQDGSMSSSSSSSANIA-------FPKLKELKFFCLDEWEEWDFGKEDIT--IMPQLSSMKIS 904 (976)
Q Consensus 835 ~~~~~~~~-~~~~~~l~l~~~~~~~~~~~~~~~~-------fp~L~~L~l~~l~~l~~~~~~~~~~~--~l~~L~~L~l~ 904 (976)
.++...+. ...+..+++++|.+...... .... +++|+.|.+.+.. +. ..+..+. .+++|+.|+++
T Consensus 447 ~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~-~~~~~~~~~~~l~~L~~L~Ls~N~-l~---~lp~~~~~~~l~~L~~L~Ls 521 (636)
T 4eco_A 447 KFPKELFSTGSPLSSINLMGNMLTEIPKN-SLKDENENFKNTYLLTSIDLRFNK-LT---KLSDDFRATTLPYLVGIDLS 521 (636)
T ss_dssp SCCTHHHHTTCCCSEEECCSSCCSBCCSS-SSEETTEECTTGGGCCEEECCSSC-CC---BCCGGGSTTTCTTCCEEECC
T ss_pred cCCHHHHccCCCCCEEECCCCCCCCcCHH-HhccccccccccCCccEEECcCCc-CC---ccChhhhhccCCCcCEEECC
Confidence 77766553 56788889999888733222 1111 2278888887642 23 2334454 89999999999
Q ss_pred cCCCCCCCCcCCCCCCCCCeEEEccCcchH-HhhccCCCCCcccccCCCceeecccccccCcc
Q 002044 905 YCSKLNSLPDQLLQSTTLEELEIIRCPILE-ERFKKDTGEDWSKITHIPKIKIHGEYVQGSPP 966 (976)
Q Consensus 905 ~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~i~~l~~l~~~~n~~~~~~~ 966 (976)
+|. +..+|..+.++++|+.|++++|..+. ..+....+..+..++.+..+++++|.+...|+
T Consensus 522 ~N~-l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~ 583 (636)
T 4eco_A 522 YNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNE 583 (636)
T ss_dssp SSC-CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCS
T ss_pred CCC-CCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCH
Confidence 987 67799999999999999997764321 13444566778889999999999999954443
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=1.3e-23 Score=252.15 Aligned_cols=405 Identities=14% Similarity=0.135 Sum_probs=248.8
Q ss_pred ccCceeEEEEEccCCCCC-cccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCccc-Cc
Q 002044 526 SQEKLRHLMLVLGYKNSF-PVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEI-PK 603 (976)
Q Consensus 526 ~~~~~r~l~~~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~l-p~ 603 (976)
...+++++.+..+....+ +..+..+++|++|++++|.+....+ ..|.++++|++|+++ ++.+..+ |.
T Consensus 55 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L~------~n~i~~l~~~ 123 (606)
T 3t6q_A 55 RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE-----TALSGPKALKHLFFI------QTGISSIDFI 123 (606)
T ss_dssp TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT-----TTTSSCTTCCEEECT------TSCCSCGGGS
T ss_pred cCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccCh-----hhhcccccccEeecc------ccCcccCCcc
Confidence 345788888887766544 5567888999999999887654322 227888999999998 5566665 56
Q ss_pred cccCCCccceecC--ccccccC-ccccccCCccEEecCCCCCCccc-chhhcccCCCc--EEEecccccccCcccccCCC
Q 002044 604 GIKKLRHLRYLKL--YLVEKLP-ETCCELLNLQTLNMCGSPGLKRL-PQGIGKLINLR--HLMFEVDYLEYMPKGIERLT 677 (976)
Q Consensus 604 ~i~~L~~Lr~L~L--~~~~~lp-~~i~~L~~L~~L~l~~~~~l~~l-p~~i~~l~~L~--~L~l~~~~l~~lp~~i~~l~ 677 (976)
.++++++|++|++ +.+..++ +.+..+++|++|++++|. +..+ |..++.+++|+ .|+++.|.+..+++......
T Consensus 124 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~ 202 (606)
T 3t6q_A 124 PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA 202 (606)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTC
T ss_pred hhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccceeEEecCCCccCccChhHhhhc
Confidence 7888889999999 4566653 334458889999998887 6555 55678888888 67777777766655433333
Q ss_pred CCCcCCceEE-----------------------------------------------e----cCCCCCCCcccccccccc
Q 002044 678 SLRTLSEFVV-----------------------------------------------V----NGSGKYGSKACNLEGLRY 706 (976)
Q Consensus 678 ~L~~L~~~~~-----------------------------------------------~----~~~~~~~~~~~~l~~L~~ 706 (976)
+|+.|++..+ . ......+.. +..+
T Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~---~~~l-- 277 (606)
T 3t6q_A 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT---FHCF-- 277 (606)
T ss_dssp EEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT---TTTC--
T ss_pred cccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHH---hccc--
Confidence 2222221100 0 000000000 1111
Q ss_pred cccCCCceEEcCcCCCCCh--------------------hhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhHHHH-
Q 002044 707 LNHLRGSLKIRGLGNVTDI--------------------DEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHEAV- 765 (976)
Q Consensus 707 L~~L~~~l~i~~l~~~~~~--------------------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~- 765 (976)
.+|+ .+.+.+. .+..+ .......+..+++|+.|+++.+.... .+
T Consensus 278 -~~L~-~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~------------~~~ 342 (606)
T 3t6q_A 278 -SGLQ-ELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL------------ELG 342 (606)
T ss_dssp -TTCS-EEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC------------BCC
T ss_pred -cCCC-EEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc------------ccc
Confidence 1111 2222111 00100 01111223334445555444432110 00
Q ss_pred hhcCCCCCCCceEEEeecCCCCCC--cccccccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccccccceEeCcc-cc
Q 002044 766 CEALQPPPNLESLQITGFKGRTLM--LSWIVSLNKLKKLRLLFCDKCEVMP-ALGILPSLEVLKIRFMKSVKRVGNE-FL 841 (976)
Q Consensus 766 ~~~l~~~~~L~~L~L~~~~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~L~~~~~l~~~~~~-~~ 841 (976)
...+..+++|+.|++++|...... |..+..+++|+.|++++|......+ .++.+++|++|++++|......+.. +.
T Consensus 343 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 422 (606)
T 3t6q_A 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422 (606)
T ss_dssp SSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTT
T ss_pred hhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhh
Confidence 112455677777777777765543 4456677788888887775444333 4677788888888877632222322 34
Q ss_pred CCCcCcccccccCCCCCCCCCccCccCCccceeeecccccccccccCCCccccCCCcceEeeecCCCCCCCCcCCCCCCC
Q 002044 842 GTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNSLPDQLLQSTT 921 (976)
Q Consensus 842 ~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~ 921 (976)
....+..+++++|.+....+. ....+++|+.|.+.+..--......+..+..+++|+.|++++|......|..+..+++
T Consensus 423 ~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 501 (606)
T 3t6q_A 423 NLHLLKVLNLSHSLLDISSEQ-LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKM 501 (606)
T ss_dssp TCTTCCEEECTTCCCBTTCTT-TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CcccCCEEECCCCccCCcCHH-HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccC
Confidence 455677778888776554332 2346888999998875321111122344678999999999999744445788899999
Q ss_pred CCeEEEccCcchHHhhccCCCCCcccccCCCceeecccccccCcchhh
Q 002044 922 LEELEIIRCPILEERFKKDTGEDWSKITHIPKIKIHGEYVQGSPPLLK 969 (976)
Q Consensus 922 L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~n~~~~~~~~~~ 969 (976)
|++|++++| .+....+..+..++.+ .+++++|.+++.+|..+
T Consensus 502 L~~L~Ls~N-----~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~ 543 (606)
T 3t6q_A 502 MNHVDLSHN-----RLTSSSIEALSHLKGI-YLNLASNHISIILPSLL 543 (606)
T ss_dssp CCEEECCSS-----CCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGH
T ss_pred CCEEECCCC-----ccCcCChhHhCccccc-EEECcCCcccccCHhhc
Confidence 999999999 5555566677788888 99999999999988754
No 16
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=4.7e-23 Score=244.40 Aligned_cols=401 Identities=13% Similarity=0.086 Sum_probs=238.0
Q ss_pred eEEEEEccCCCCCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCccc-CccccCCC
Q 002044 531 RHLMLVLGYKNSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEI-PKGIKKLR 609 (976)
Q Consensus 531 r~l~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~l-p~~i~~L~ 609 (976)
+++.+..+....+|..+. ++|++|++++|.+...... .|.++++|++|+|+ ++.+..+ |..+++++
T Consensus 34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~-----~~~~l~~L~~L~Ls------~N~l~~~~~~~~~~l~ 100 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMP-----DISFLSELRVLRLS------HNRIRSLDFHVFLFNQ 100 (562)
T ss_dssp CEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGG-----GTTTCTTCCEEECC------SCCCCEECTTTTTTCT
T ss_pred cEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChh-----hhccCCCccEEECC------CCCCCcCCHHHhCCCC
Confidence 556666666666665443 7888888888876544322 27888888888888 5556666 56688888
Q ss_pred ccceecC--ccccccCccccccCCccEEecCCCCCCccc--chhhcccCCCcEEEecccccccCcccccCCCCC--CcCC
Q 002044 610 HLRYLKL--YLVEKLPETCCELLNLQTLNMCGSPGLKRL--PQGIGKLINLRHLMFEVDYLEYMPKGIERLTSL--RTLS 683 (976)
Q Consensus 610 ~Lr~L~L--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~l--p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L--~~L~ 683 (976)
+|++|+| +.+..+|.. .+++|++|++++|. +..+ |..++++++|++|++++|.+.. ..++.+++| +.|+
T Consensus 101 ~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~ 175 (562)
T 3a79_B 101 DLEYLDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCIL 175 (562)
T ss_dssp TCCEEECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEE
T ss_pred CCCEEECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEE
Confidence 8888888 677788876 78888888888887 6654 4678888888888887777765 245555555 6665
Q ss_pred ceEEecC--CCCCCCcccccc--------------------cccccccCCCceEEcCcCC-CCChhhHHhccCCCC----
Q 002044 684 EFVVVNG--SGKYGSKACNLE--------------------GLRYLNHLRGSLKIRGLGN-VTDIDEAKSAHLDKK---- 736 (976)
Q Consensus 684 ~~~~~~~--~~~~~~~~~~l~--------------------~L~~L~~L~~~l~i~~l~~-~~~~~~~~~~~l~~~---- 736 (976)
+..+. . .+..+.....+. ....+..|. .+.+..-.. ...... ....+..+
T Consensus 176 L~~n~-l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~l~~-~~~~l~~l~~L~ 252 (562)
T 3a79_B 176 LDLVS-YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ-LSNIKLNDENCQRLMT-FLSELTRGPTLL 252 (562)
T ss_dssp EEESS-CCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEE-EEEEECCSTTHHHHHH-HHHHHHSCSSCE
T ss_pred eeccc-ccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEE-EecccccccccchHHH-HHHHHhccCcce
Confidence 44432 2 221121111111 000111111 111111000 000000 00011112
Q ss_pred -----------------------CCCceEEEEecCCC---CCCCC-----ccc--------hh---hHHHHhhcCCCCCC
Q 002044 737 -----------------------KNLVVLILRFNKEA---PVGMK-----DEN--------EA---NHEAVCEALQPPPN 774 (976)
Q Consensus 737 -----------------------~~L~~L~l~~~~~~---~~~~~-----~~~--------~~---~~~~~~~~l~~~~~ 774 (976)
.+|+.|+++.+... +.... ... .. ........+.+..+
T Consensus 253 ~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~ 332 (562)
T 3a79_B 253 NVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN 332 (562)
T ss_dssp EEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCC
T ss_pred EEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCc
Confidence 25666666655321 11110 000 00 00000000001134
Q ss_pred CceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccccccceEeC---ccccCCCcCcccc
Q 002044 775 LESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMP-ALGILPSLEVLKIRFMKSVKRVG---NEFLGTEISDHIH 850 (976)
Q Consensus 775 L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~L~~~~~l~~~~---~~~~~~~~~~~l~ 850 (976)
|+.|++++|..... + ....+++|++|++++|...+.+| .++.+++|++|++++|. ++.++ ..+.....+..++
T Consensus 333 L~~L~l~~n~~~~~-~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~ 409 (562)
T 3a79_B 333 IKMLSISDTPFIHM-V-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLD 409 (562)
T ss_dssp CSEEEEESSCCCCC-C-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEE
T ss_pred ceEEEccCCCcccc-c-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEE
Confidence 56666665554322 1 11567888888888887655443 57888888888888875 55433 3344556677888
Q ss_pred cccCCCCCCCCCccCccCCccceeeecccccccccccCCCccccC-CCcceEeeecCCCCCCCCcCCCCCCCCCeEEEcc
Q 002044 851 IQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIM-PQLSSMKISYCSKLNSLPDQLLQSTTLEELEIIR 929 (976)
Q Consensus 851 l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l-~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~ 929 (976)
+++|.+....+......+++|+.|.+.+.. +. ...+ ..+ ++|+.|++++|. ++.+|..+.++++|+.|++++
T Consensus 410 l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~-l~--~~~~---~~l~~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~ 482 (562)
T 3a79_B 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNM-LT--GSVF---RCLPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVAS 482 (562)
T ss_dssp CTTSCCBSCCSSCCCCCCTTCCEEECCSSC-CC--GGGG---SSCCTTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCS
T ss_pred CCCCcCCCccChhhhcCcccCCEEECCCCC-CC--cchh---hhhcCcCCEEECCCCc-CcccChhhcCCCCCCEEECCC
Confidence 888877664433333456788888877643 21 1222 234 699999999985 889998888999999999999
Q ss_pred CcchHHhhccCCCCCcccccCCCceeecccccccCcch
Q 002044 930 CPILEERFKKDTGEDWSKITHIPKIKIHGEYVQGSPPL 967 (976)
Q Consensus 930 c~~l~~~~~~~~~~~~~~i~~l~~l~~~~n~~~~~~~~ 967 (976)
| ++.......+..++++..+++++|.+.+.+|.
T Consensus 483 N-----~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 483 N-----QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp S-----CCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred C-----CCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 9 55543433477889999999999999876654
No 17
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=4e-23 Score=256.31 Aligned_cols=410 Identities=20% Similarity=0.195 Sum_probs=229.7
Q ss_pred ccCceeEEEEEccCCCCC-cccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCccc-Cc
Q 002044 526 SQEKLRHLMLVLGYKNSF-PVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEI-PK 603 (976)
Q Consensus 526 ~~~~~r~l~~~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~l-p~ 603 (976)
.+.+++++.+..+.+..+ +..+..+++|++|++++|...... .+..|.++++|++|+|+ ++.+..+ |.
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i----~~~~f~~L~~L~~L~Ls------~N~l~~~~p~ 91 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI----DKEAFRNLPNLRILDLG------SSKIYFLHPD 91 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEE----CTTTTSSCTTCCEEECT------TCCCCEECTT
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCcccc----CHHHhcCCCCCCEEECC------CCcCcccCHh
Confidence 567899999998887654 567788999999999998532221 13338899999999999 5566655 78
Q ss_pred cccCCCccceecC--ccccc-cCcc--ccccCCccEEecCCCCCCccc--chhhcccCCCcEEEecccccccC-cccccC
Q 002044 604 GIKKLRHLRYLKL--YLVEK-LPET--CCELLNLQTLNMCGSPGLKRL--PQGIGKLINLRHLMFEVDYLEYM-PKGIER 675 (976)
Q Consensus 604 ~i~~L~~Lr~L~L--~~~~~-lp~~--i~~L~~L~~L~l~~~~~l~~l--p~~i~~l~~L~~L~l~~~~l~~l-p~~i~~ 675 (976)
.++++.+|++|+| +.+.. +|.. +++|++|++|++++|. +..+ |..++++++|++|++++|.+..+ |..++.
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 8999999999999 45544 4554 8899999999999998 5554 35789999999999988877654 445555
Q ss_pred C--CCCCcCCceEEecCCCCCCCccccccc------cccccc----CCC----------------ceEEc--------Cc
Q 002044 676 L--TSLRTLSEFVVVNGSGKYGSKACNLEG------LRYLNH----LRG----------------SLKIR--------GL 719 (976)
Q Consensus 676 l--~~L~~L~~~~~~~~~~~~~~~~~~l~~------L~~L~~----L~~----------------~l~i~--------~l 719 (976)
+ ++|+.|.+..+. ..+..+.....+.. |+.|.- +.+ .+.+. ..
T Consensus 171 l~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~ 249 (844)
T 3j0a_A 171 LQGKTLSFFSLAANS-LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249 (844)
T ss_dssp HHHCSSCCCEECCSB-SCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred ccCCccceEECCCCc-cccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccc
Confidence 5 666666543332 22211111111111 111100 000 00000 00
Q ss_pred ----------------CCCC-------ChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCc
Q 002044 720 ----------------GNVT-------DIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLE 776 (976)
Q Consensus 720 ----------------~~~~-------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 776 (976)
.++. .........+..+++|+.|+++.+.... ..+..+..+++|+
T Consensus 250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~------------~~~~~~~~l~~L~ 317 (844)
T 3j0a_A 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK------------IADEAFYGLDNLQ 317 (844)
T ss_dssp SSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE------------ECTTTTTTCSSCC
T ss_pred cccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCC------------CChHHhcCCCCCC
Confidence 0000 0000111224455666666666554320 0122345566777
Q ss_pred eEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccccccceEeCc-----------------
Q 002044 777 SLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMP-ALGILPSLEVLKIRFMKSVKRVGN----------------- 838 (976)
Q Consensus 777 ~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~L~~~~~l~~~~~----------------- 838 (976)
.|++++|.+....|.++..+++|+.|+|++|......+ .+..+++|++|+|++|. ++.++.
T Consensus 318 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~L~~L~l~~N~l~~l 396 (844)
T 3j0a_A 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA-LTTIHFIPSIPDIFLSGNKLVTL 396 (844)
T ss_dssp EEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC-SCCCSSCCSCSEEEEESCCCCCC
T ss_pred EEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC-CCcccCCCCcchhccCCCCcccc
Confidence 77777777666556666677777777777764322222 25667777777776664 222211
Q ss_pred --cc----------------------cCCCcCcccccccCCCCCCCCCccCccCCccceeeeccccccccc--ccCCCcc
Q 002044 839 --EF----------------------LGTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEW--DFGKEDI 892 (976)
Q Consensus 839 --~~----------------------~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~--~~~~~~~ 892 (976)
.. .....+..+++++|.+...........+++|+.|.+.+..--..+ ...+..+
T Consensus 397 ~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 476 (844)
T 3j0a_A 397 PKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476 (844)
T ss_dssp CCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCS
T ss_pred cccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhh
Confidence 00 001111222222222222111111112334444444332100001 1112234
Q ss_pred ccCCCcceEeeecCCCCCCCC-cCCCCCCCCCeEEEccCcchHHhhccCCCCCcccccCCCceeecccccccCcchh
Q 002044 893 TIMPQLSSMKISYCSKLNSLP-DQLLQSTTLEELEIIRCPILEERFKKDTGEDWSKITHIPKIKIHGEYVQGSPPLL 968 (976)
Q Consensus 893 ~~l~~L~~L~l~~c~~L~~lp-~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~n~~~~~~~~~ 968 (976)
..+++|+.|++++|. +..+| ..+.++++|+.|++++| ++....+..+. +.+..+++++|.+++.+|..
T Consensus 477 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-----~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~ 545 (844)
T 3j0a_A 477 EGLSHLQVLYLNHNY-LNSLPPGVFSHLTALRGLSLNSN-----RLTVLSHNDLP--ANLEILDISRNQLLAPNPDV 545 (844)
T ss_dssp SCBCCEECCCCCHHH-HTTCCTTSSSSCCSCSEEEEESC-----CCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC
T ss_pred cCcccccEEECCCCc-ccccChhHccchhhhheeECCCC-----CCCccChhhhh--ccccEEECCCCcCCCCChhH
Confidence 566777777777774 55554 44567788888888887 44444444443 67777888888887777754
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=1.5e-23 Score=255.14 Aligned_cols=352 Identities=14% Similarity=0.151 Sum_probs=248.1
Q ss_pred CcccccccCceeEEEecCcccchhh------------hHHHHHHHHh--cCCCcceEEecCcccccCCCCcccCccccCC
Q 002044 543 FPVSIFYARKLRSLMLSYNTLNQKA------------SAQVLQGLFD--QLTGLRVLRIEGMKSLIGSGTNEIPKGIKKL 608 (976)
Q Consensus 543 ~~~~~~~~~~Lr~L~l~~~~~~~~~------------~~~~~~~~~~--~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L 608 (976)
+|..+.++++|++|++++|.+.+.. ....+|..+. ++++|++|+|++|. ....+|..++++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~-----l~~~iP~~l~~L 514 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP-----NMTQLPDFLYDL 514 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT-----TCCSCCGGGGGC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC-----CCccChHHHhCC
Confidence 4677888999999999999876610 0001233344 89999999999532 245688899999
Q ss_pred CccceecC--cc-cc--ccCccccccC-------CccEEecCCCCCCcccch--hhcccCCCcEEEecccccccCccccc
Q 002044 609 RHLRYLKL--YL-VE--KLPETCCELL-------NLQTLNMCGSPGLKRLPQ--GIGKLINLRHLMFEVDYLEYMPKGIE 674 (976)
Q Consensus 609 ~~Lr~L~L--~~-~~--~lp~~i~~L~-------~L~~L~l~~~~~l~~lp~--~i~~l~~L~~L~l~~~~l~~lp~~i~ 674 (976)
++|++|+| +. +. .+|..++++. +|++|++++|. +..+|. .++++++|++|++++|.+..+| .++
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~ 592 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFG 592 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcccch-hhc
Confidence 99999999 33 44 5888777776 99999999998 779998 8999999999999888888888 888
Q ss_pred CCCCCCcCCceEEecCCCCCCCccccccc-ccccccCCCceEEcCcCCCCChhhHHhccCCCC--CCCceEEEEecCCCC
Q 002044 675 RLTSLRTLSEFVVVNGSGKYGSKACNLEG-LRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKK--KNLVVLILRFNKEAP 751 (976)
Q Consensus 675 ~l~~L~~L~~~~~~~~~~~~~~~~~~l~~-L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~ 751 (976)
.+++|+.|++..+. .. ..|.....+.. |+.| .+.+.. +..+ ...+..+ .+|+.|+++++....
T Consensus 593 ~L~~L~~L~Ls~N~-l~-~lp~~l~~l~~~L~~L-------~Ls~N~-L~~l----p~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQ-IE-EIPEDFCAFTDQVEGL-------GFSHNK-LKYI----PNIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp TTSEESEEECCSSC-CS-CCCTTSCEECTTCCEE-------ECCSSC-CCSC----CSCCCTTCSSCEEEEECCSSCTTT
T ss_pred CCCcceEEECcCCc-cc-cchHHHhhccccCCEE-------ECcCCC-CCcC----chhhhccccCCCCEEECcCCcCCC
Confidence 99999988765543 22 33333333333 3333 222211 1111 1223333 459999998876431
Q ss_pred CCCCccchhhHHHHhhcCC--CCCCCceEEEeecCCCCCCccccc-ccccccEEEEeCCCCCCCCCC---------CCCC
Q 002044 752 VGMKDENEANHEAVCEALQ--PPPNLESLQITGFKGRTLMLSWIV-SLNKLKKLRLLFCDKCEVMPA---------LGIL 819 (976)
Q Consensus 752 ~~~~~~~~~~~~~~~~~l~--~~~~L~~L~L~~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~l~~---------l~~L 819 (976)
.. ..++..+. ..++|+.|++++|.+..+ |.++. .+++|+.|+|++|... .+|. +.++
T Consensus 659 ~i---------p~l~~~l~~~~~~~L~~L~Ls~N~L~~l-p~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl 727 (876)
T 4ecn_A 659 EG---------RNISCSMDDYKGINASTVTLSYNEIQKF-PTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNT 727 (876)
T ss_dssp TS---------SSCSSCTTTCCCCCEEEEECCSSCCCSC-CHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTG
T ss_pred cc---------ccchhhhccccCCCcCEEEccCCcCCcc-CHHHHccCCCCCEEECCCCcCC-ccChHHhcccccccccc
Confidence 00 00111111 345899999999998877 76654 7899999999999644 4443 2234
Q ss_pred CCcceeeccccccceEeCcccc--CCCcCcccccccCCCCCCCCCccCccCCccceeeecccc---cccccccCCCcccc
Q 002044 820 PSLEVLKIRFMKSVKRVGNEFL--GTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLD---EWEEWDFGKEDITI 894 (976)
Q Consensus 820 ~~L~~L~L~~~~~l~~~~~~~~--~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~---~l~~~~~~~~~~~~ 894 (976)
++|+.|+|++|. +..++..+. ....+..+++++|.+... ......+++|+.|.+.+.+ .+......|..+..
T Consensus 728 ~~L~~L~Ls~N~-L~~lp~~l~~~~l~~L~~L~Ls~N~L~~l--p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~ 804 (876)
T 4ecn_A 728 YLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYNCFSSF--PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITT 804 (876)
T ss_dssp GGCCEEECCSSC-CCCCCGGGSTTTCTTCCEEECCSSCCSSC--CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGG
T ss_pred CCccEEECCCCC-CccchHHhhhccCCCcCEEEeCCCCCCcc--chhhhcCCCCCEEECCCCCCcccccccccChHHHhc
Confidence 599999999986 668887776 677788899999988763 2224478889999887643 23334455666889
Q ss_pred CCCcceEeeecCCCCCCCCcCCCCCCCCCeEEEccCcc
Q 002044 895 MPQLSSMKISYCSKLNSLPDQLLQSTTLEELEIIRCPI 932 (976)
Q Consensus 895 l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~ 932 (976)
+++|+.|++++|. ++.+|..+. ++|+.|+|++|+.
T Consensus 805 L~~L~~L~Ls~N~-L~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 805 CPSLIQLQIGSND-IRKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp CSSCCEEECCSSC-CCBCCSCCC--SSSCEEECCSCTT
T ss_pred CCCCCEEECCCCC-CCccCHhhc--CCCCEEECCCCCC
Confidence 9999999999997 599998765 6999999999953
No 19
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.90 E-value=2.8e-23 Score=252.72 Aligned_cols=406 Identities=16% Similarity=0.150 Sum_probs=230.3
Q ss_pred ccCceeEEEEEccCCCCCcc-cccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCc-
Q 002044 526 SQEKLRHLMLVLGYKNSFPV-SIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPK- 603 (976)
Q Consensus 526 ~~~~~r~l~~~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~- 603 (976)
.+.+++++.+..+....++. .+..+++|++|++++|.+.... +..|.++++|++|+|+ ++.+..+|.
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~L~------~n~l~~l~~~ 91 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE-----PELCQKLPMLKVLNLQ------HNELSQLSDK 91 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCC-----TTHHHHCTTCCEEECC------SSCCCCCCTT
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccC-----HHHHhcccCcCEEECC------CCccCccChh
Confidence 45789999999988877654 5788999999999999875543 3348899999999999 666778886
Q ss_pred cccCCCccceecC--ccccccC-ccccccCCccEEecCCCCCCcccchhhcccCCCcEEEecccccccCccc---ccCCC
Q 002044 604 GIKKLRHLRYLKL--YLVEKLP-ETCCELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLEYMPKG---IERLT 677 (976)
Q Consensus 604 ~i~~L~~Lr~L~L--~~~~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lp~~---i~~l~ 677 (976)
.++++.+|++|++ +.+..+| ..++++++|++|++++|......|..++++++|++|+++.|.+..++.. ...++
T Consensus 92 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 171 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS 171 (680)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTC
T ss_pred hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccc
Confidence 5999999999999 5677777 5799999999999999984344566789999999999998888877653 33567
Q ss_pred CCCcCCceEEecCCCCCCCcccccccccccc---------------------cCCCceEEcCcCCCCChhhHHhccCCCC
Q 002044 678 SLRTLSEFVVVNGSGKYGSKACNLEGLRYLN---------------------HLRGSLKIRGLGNVTDIDEAKSAHLDKK 736 (976)
Q Consensus 678 ~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~---------------------~L~~~l~i~~l~~~~~~~~~~~~~l~~~ 736 (976)
+|+.|++..+. ..+..+.....+..|..|. .++ .+.+.+.. +. ......+..+
T Consensus 172 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~-~L~L~~n~-l~---~~~~~~~~~l 245 (680)
T 1ziw_A 172 SLKKLELSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR-NLSLSNSQ-LS---TTSNTTFLGL 245 (680)
T ss_dssp EESEEECTTCC-CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCC-EEECTTSC-CC---EECTTTTGGG
T ss_pred cccEEECCCCc-ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhcccc-EEEccCCc-cc---ccChhHhhcc
Confidence 88888754433 3332232222333332221 011 11111100 00 0000112222
Q ss_pred --CCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCC---
Q 002044 737 --KNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCE--- 811 (976)
Q Consensus 737 --~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~--- 811 (976)
.+|+.|+++.+.... ..+..+..+++|+.|++++|......|.++..+++|+.|++.+|....
T Consensus 246 ~~~~L~~L~Ls~n~l~~------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 313 (680)
T 1ziw_A 246 KWTNLTMLDLSYNNLNV------------VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313 (680)
T ss_dssp GGSCCCEEECTTSCCCE------------ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC---
T ss_pred CcCCCCEEECCCCCcCc------------cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccc
Confidence 235555555443220 001223445566666666665554444455555555555555442211
Q ss_pred --CCC-----CCCCCCCcceeeccccccceEeC-ccccCCCcCcccccc----------------------------cCC
Q 002044 812 --VMP-----ALGILPSLEVLKIRFMKSVKRVG-NEFLGTEISDHIHIQ----------------------------DGS 855 (976)
Q Consensus 812 --~l~-----~l~~L~~L~~L~L~~~~~l~~~~-~~~~~~~~~~~l~l~----------------------------~~~ 855 (976)
.+| .++.+++|++|++++|. +..++ ..+.+...+..++++ +|.
T Consensus 314 ~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~ 392 (680)
T 1ziw_A 314 LASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392 (680)
T ss_dssp ---CCEECTTTTTTCTTCCEEECCSCC-BCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSC
T ss_pred cccccccChhhcccCCCCCEEECCCCc-cCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCC
Confidence 122 23445555555555443 22222 112222333333333 333
Q ss_pred CCCCCCCccCccCCccceeeecccccccccccCCCccccCCCcceEeeecCCCCCCCCcCCCCCCCCCeEEEccCcchHH
Q 002044 856 MSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNSLPDQLLQSTTLEELEIIRCPILEE 935 (976)
Q Consensus 856 ~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~ 935 (976)
+....+. ....+++|+.|.+.+..-... ..+..+..+++|+.|++++|......|..+..+++|+.|++++|
T Consensus 393 l~~~~~~-~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n----- 464 (680)
T 1ziw_A 393 ISKIESD-AFSWLGHLEVLDLGLNEIGQE--LTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV----- 464 (680)
T ss_dssp CCEECTT-TTTTCTTCCEEECCSSCCEEE--CCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTS-----
T ss_pred CCeEChh-hhhCCCCCCEEeCCCCcCccc--cCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccc-----
Confidence 2221111 112334444444443211000 11122445666666666666532223345555666666666666
Q ss_pred hhc--cCCCCCcccccCCCceeecccccccCcchhh
Q 002044 936 RFK--KDTGEDWSKITHIPKIKIHGEYVQGSPPLLK 969 (976)
Q Consensus 936 ~~~--~~~~~~~~~i~~l~~l~~~~n~~~~~~~~~~ 969 (976)
.+. ...+..+...+++..+++++|.+++.+|...
T Consensus 465 ~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 500 (680)
T 1ziw_A 465 ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500 (680)
T ss_dssp CCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cccccccCCcccccCCCCCEEECCCCCCCcCChhhh
Confidence 222 2334556778889999999999998877643
No 20
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=1.9e-22 Score=233.20 Aligned_cols=343 Identities=19% Similarity=0.216 Sum_probs=158.6
Q ss_pred CceeEEEEEccCCCCCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccC
Q 002044 528 EKLRHLMLVLGYKNSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKK 607 (976)
Q Consensus 528 ~~~r~l~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~ 607 (976)
..++.+.+..+....++ .+..+++|++|++++|.+..... +.++++|++|+++ ++.+..++. +++
T Consensus 46 ~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~~~~-------~~~l~~L~~L~l~------~n~l~~~~~-~~~ 110 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-------LKNLTKLVDILMN------NNQIADITP-LAN 110 (466)
T ss_dssp HTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-------GTTCTTCCEEECC------SSCCCCCGG-GTT
T ss_pred ccccEEecCCCCCccCc-chhhhcCCCEEECCCCccCCchh-------hhccccCCEEECC------CCccccChh-hcC
Confidence 34555555555444433 24455556666665555433211 4555556666555 333444443 555
Q ss_pred CCccceecC--ccccccCccccccCCccEEecCCCCCCcccchhhcccCCCcEEEecccccccCcccccCCCCCCcCCce
Q 002044 608 LRHLRYLKL--YLVEKLPETCCELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLEYMPKGIERLTSLRTLSEF 685 (976)
Q Consensus 608 L~~Lr~L~L--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~ 685 (976)
+++|++|++ +.+..+|. +.++++|++|++++|. +..+|. ++.+++|++|+++ +.+..++. ++.+++|+.|++.
T Consensus 111 l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~ 185 (466)
T 1o6v_A 111 LTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA-LSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDIS 185 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG-GTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECC
T ss_pred CCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh-hccCCcccEeecC-CcccCchh-hccCCCCCEEECc
Confidence 555555555 34444443 5555555555555554 444442 5555555555553 22333322 4555555555432
Q ss_pred EEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhHHHH
Q 002044 686 VVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHEAV 765 (976)
Q Consensus 686 ~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 765 (976)
.+. ... +..+..+.+|+ .+.+.+.. +.... .+..+.+|+.|+++++....
T Consensus 186 ~n~-l~~--------~~~l~~l~~L~-~L~l~~n~-l~~~~-----~~~~l~~L~~L~l~~n~l~~-------------- 235 (466)
T 1o6v_A 186 SNK-VSD--------ISVLAKLTNLE-SLIATNNQ-ISDIT-----PLGILTNLDELSLNGNQLKD-------------- 235 (466)
T ss_dssp SSC-CCC--------CGGGGGCTTCS-EEECCSSC-CCCCG-----GGGGCTTCCEEECCSSCCCC--------------
T ss_pred CCc-CCC--------ChhhccCCCCC-EEEecCCc-ccccc-----cccccCCCCEEECCCCCccc--------------
Confidence 221 111 11111222222 22222211 11110 12334455555554443220
Q ss_pred hhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceEeCccccCCCc
Q 002044 766 CEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMPALGILPSLEVLKIRFMKSVKRVGNEFLGTEI 845 (976)
Q Consensus 766 ~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~ 845 (976)
...+..+++|+.|++++|..... +. +..+++|+.|++++|... .++.+..+++|+.|++++|.
T Consensus 236 ~~~l~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~L~~n~-------------- 298 (466)
T 1o6v_A 236 IGTLASLTNLTDLDLANNQISNL-AP-LSGLTKLTELKLGANQIS-NISPLAGLTALTNLELNENQ-------------- 298 (466)
T ss_dssp CGGGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCC-CCGGGTTCTTCSEEECCSSC--------------
T ss_pred chhhhcCCCCCEEECCCCccccc-hh-hhcCCCCCEEECCCCccC-ccccccCCCccCeEEcCCCc--------------
Confidence 01233344555555555554443 22 444555555555555322 22234455555555555543
Q ss_pred CcccccccCCCCCCCCCccCccCCccceeeecccccccccccCCCccccCCCcceEeeecCCCCCCCCcCCCCCCCCCeE
Q 002044 846 SDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNSLPDQLLQSTTLEEL 925 (976)
Q Consensus 846 ~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L 925 (976)
+..... ...+++|+.|.+.++. +.... + +..+++|+.|++++|. +..++ .+.++++|+.|
T Consensus 299 ----------l~~~~~---~~~l~~L~~L~L~~n~-l~~~~--~--~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L 358 (466)
T 1o6v_A 299 ----------LEDISP---ISNLKNLTYLTLYFNN-ISDIS--P--VSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWL 358 (466)
T ss_dssp ----------CSCCGG---GGGCTTCSEEECCSSC-CSCCG--G--GGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEE
T ss_pred ----------ccCchh---hcCCCCCCEEECcCCc-CCCch--h--hccCccCCEeECCCCc-cCCch-hhccCCCCCEE
Confidence 322211 2245666666665542 22111 1 3456666666666664 55554 35556666666
Q ss_pred EEccCcchHHhhccCCCCCcccccCCCceeecccccccC
Q 002044 926 EIIRCPILEERFKKDTGEDWSKITHIPKIKIHGEYVQGS 964 (976)
Q Consensus 926 ~l~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~n~~~~~ 964 (976)
++++| .+....+ +..++.+..+++++|.+++.
T Consensus 359 ~l~~n-----~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 359 SAGHN-----QISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp ECCSS-----CCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred eCCCC-----ccCccch--hhcCCCCCEEeccCCcccCC
Confidence 66666 2222222 44556666666666666653
No 21
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=252.09 Aligned_cols=138 Identities=19% Similarity=0.229 Sum_probs=109.6
Q ss_pred ccCCCCCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCccc-CccccCCCccceec
Q 002044 537 LGYKNSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEI-PKGIKKLRHLRYLK 615 (976)
Q Consensus 537 ~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~l-p~~i~~L~~Lr~L~ 615 (976)
......+|. -.++|++|++++|.+...... .|.++++|++|+|++|. .+..+ |..++++++|++|+
T Consensus 13 ~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~-----~~~~l~~L~~LdLs~n~-----~~~~i~~~~f~~L~~L~~L~ 79 (844)
T 3j0a_A 13 FCNLTQVPQ---VLNTTERLLLSFNYIRTVTAS-----SFPFLEQLQLLELGSQY-----TPLTIDKEAFRNLPNLRILD 79 (844)
T ss_dssp CCCSSCCCS---SCTTCCEEEEESCCCCEECSS-----SCSSCCSCSEEEECTTC-----CCCEECTTTTSSCTTCCEEE
T ss_pred CCCCCCCCC---CCCCcCEEECCCCcCCccChh-----HCcccccCeEEeCCCCC-----CccccCHHHhcCCCCCCEEE
Confidence 344555564 468999999999987654332 28999999999999642 34455 67899999999999
Q ss_pred C--cccccc-CccccccCCccEEecCCCCCCcccchh--hcccCCCcEEEecccccccCc--ccccCCCCCCcCCceEE
Q 002044 616 L--YLVEKL-PETCCELLNLQTLNMCGSPGLKRLPQG--IGKLINLRHLMFEVDYLEYMP--KGIERLTSLRTLSEFVV 687 (976)
Q Consensus 616 L--~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~--i~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~~~~~ 687 (976)
| +.+..+ |..++++++|++|+|++|.....+|.. ++++++|++|+++.|.+..++ ..++++++|++|++..+
T Consensus 80 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 80 LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp CTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred CCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 9 567666 789999999999999999833446665 899999999999999888764 46899999999976543
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=2.1e-22 Score=238.63 Aligned_cols=416 Identities=17% Similarity=0.145 Sum_probs=225.6
Q ss_pred ccCceeEEEEEccCCCCC-cccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCcc
Q 002044 526 SQEKLRHLMLVLGYKNSF-PVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKG 604 (976)
Q Consensus 526 ~~~~~r~l~~~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~ 604 (976)
.+..++++.+..+..... +..+..+++|++|++++|.+..... ..|.++++|++|+|+ ++.+..+|..
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-----~~~~~l~~L~~L~Ls------~n~l~~~~~~ 92 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG-----DAFYSLGSLEHLDLS------DNHLSSLSSS 92 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT-----TTTTTCTTCCEEECT------TSCCCSCCHH
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh-----hhccccccCCEEECC------CCccCccCHH
Confidence 345788888888776654 4567788889999998887654332 237788888999888 5566666654
Q ss_pred -ccCCCccceecC--ccccc--cCccccccCCccEEecCCCCCCcccc-hhhcccCCCcEEEeccccccc-CcccccCCC
Q 002044 605 -IKKLRHLRYLKL--YLVEK--LPETCCELLNLQTLNMCGSPGLKRLP-QGIGKLINLRHLMFEVDYLEY-MPKGIERLT 677 (976)
Q Consensus 605 -i~~L~~Lr~L~L--~~~~~--lp~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~-lp~~i~~l~ 677 (976)
++++++|++|++ +.+.. .|..++++++|++|++++|..+..+| ..++.+++|++|++++|.+.. .|..++.++
T Consensus 93 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 172 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR 172 (549)
T ss_dssp HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccc
Confidence 888888888888 45553 46678888888888888887667776 468888888888887777665 566677766
Q ss_pred CCCcCCceEEecCCCCCCCc-cccccccccc---------------------ccCCCceEEcCcCCCCChhhHHhccCCC
Q 002044 678 SLRTLSEFVVVNGSGKYGSK-ACNLEGLRYL---------------------NHLRGSLKIRGLGNVTDIDEAKSAHLDK 735 (976)
Q Consensus 678 ~L~~L~~~~~~~~~~~~~~~-~~~l~~L~~L---------------------~~L~~~l~i~~l~~~~~~~~~~~~~l~~ 735 (976)
+|+.|++..+. ... .+.. ...+..|+.| ..++ .+.+.+..-...........+..
T Consensus 173 ~L~~L~l~~n~-~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~l~~~~~~ 249 (549)
T 2z81_A 173 DIHHLTLHLSE-SAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMK-KLAFRGSVLTDESFNELLKLLRY 249 (549)
T ss_dssp EEEEEEEECSB-STT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCC-EEEEESCEEEHHHHHHHHGGGGG
T ss_pred cCceEecccCc-ccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhccc-ceeccccccchhHHHHHHHHhhh
Confidence 66666533221 100 0000 0011111111 0000 11111100000000011112223
Q ss_pred CCCCceEEEEecCCCCCCCC------------ccc----------hh-hHHHHhhcCCCCCCCceEEEeecCCCCCCccc
Q 002044 736 KKNLVVLILRFNKEAPVGMK------------DEN----------EA-NHEAVCEALQPPPNLESLQITGFKGRTLMLSW 792 (976)
Q Consensus 736 ~~~L~~L~l~~~~~~~~~~~------------~~~----------~~-~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~ 792 (976)
+.+|+.+.++.+........ ... .. ............++|+.|++++|....+ |.+
T Consensus 250 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~i-p~~ 328 (549)
T 2z81_A 250 ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV-PCS 328 (549)
T ss_dssp CTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCC-CHH
T ss_pred hccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccC-CHH
Confidence 34444444443321100000 000 00 0000000001124667777777766555 655
Q ss_pred c-cccccccEEEEeCCCCCCCC----CCCCCCCCcceeeccccccceEeC---ccccCCCcCcccccccCCCCCCCCCcc
Q 002044 793 I-VSLNKLKKLRLLFCDKCEVM----PALGILPSLEVLKIRFMKSVKRVG---NEFLGTEISDHIHIQDGSMSSSSSSSA 864 (976)
Q Consensus 793 ~-~~l~~L~~L~L~~~~~~~~l----~~l~~L~~L~~L~L~~~~~l~~~~---~~~~~~~~~~~l~l~~~~~~~~~~~~~ 864 (976)
+ ..+++|+.|+|++|...+.+ ..++.+++|++|+|++|. ++.++ ..+.....+..+++++|.+..... .
T Consensus 329 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~--~ 405 (549)
T 2z81_A 329 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRNTFHPMPD--S 405 (549)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTCCCCCCCS--C
T ss_pred HHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCCCCccCCh--h
Confidence 5 35777777777777644332 125566677777776664 33332 123334445556666665542211 1
Q ss_pred CccCCccceeeecccccccccccC---------------CCccccCCCcceEeeecCCCCCCCCcCCCCCCCCCeEEEcc
Q 002044 865 NIAFPKLKELKFFCLDEWEEWDFG---------------KEDITIMPQLSSMKISYCSKLNSLPDQLLQSTTLEELEIIR 929 (976)
Q Consensus 865 ~~~fp~L~~L~l~~l~~l~~~~~~---------------~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~ 929 (976)
...+++|+.|.+.+.. +..+... ......+++|++|++++|. ++.+|. ...+++|+.|++++
T Consensus 406 ~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~-l~~ip~-~~~l~~L~~L~Ls~ 482 (549)
T 2z81_A 406 CQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNK-LKTLPD-ASLFPVLLVMKISR 482 (549)
T ss_dssp CCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSC-CSSCCC-GGGCTTCCEEECCS
T ss_pred hcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCc-cCcCCC-cccCccCCEEecCC
Confidence 1234455555554422 1111000 0001257777788887774 667776 34577788888887
Q ss_pred CcchHHhhccCCCCCcccccCCCceeecccccccCcch
Q 002044 930 CPILEERFKKDTGEDWSKITHIPKIKIHGEYVQGSPPL 967 (976)
Q Consensus 930 c~~l~~~~~~~~~~~~~~i~~l~~l~~~~n~~~~~~~~ 967 (976)
| ++....+..+...+.+..+++++|.+.+.+|.
T Consensus 483 N-----~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 483 N-----QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp S-----CCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred C-----ccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 7 44444444566777777888888877776664
No 23
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=7e-23 Score=244.00 Aligned_cols=146 Identities=21% Similarity=0.299 Sum_probs=113.8
Q ss_pred ccCceeEEEEEccCCCCCc-ccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCc-
Q 002044 526 SQEKLRHLMLVLGYKNSFP-VSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPK- 603 (976)
Q Consensus 526 ~~~~~r~l~~~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~- 603 (976)
...+++++.+..+....++ ..+..+++|++|++++|.+..... ..|.++++|++|+++ ++.+..+|.
T Consensus 50 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~------~n~l~~l~~~ 118 (570)
T 2z63_A 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-----GAFSGLSSLQKLVAV------ETNLASLENF 118 (570)
T ss_dssp TCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-----TTTTTCTTCCEEECT------TSCCCCSTTC
T ss_pred CCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH-----hhhcCcccccccccc------ccccccCCCc
Confidence 4567899998888766553 457789999999999998654332 238899999999999 666777765
Q ss_pred cccCCCccceecC--ccccc--cCccccccCCccEEecCCCCCCccc-chhhcccCCC----cEEEecccccccCccccc
Q 002044 604 GIKKLRHLRYLKL--YLVEK--LPETCCELLNLQTLNMCGSPGLKRL-PQGIGKLINL----RHLMFEVDYLEYMPKGIE 674 (976)
Q Consensus 604 ~i~~L~~Lr~L~L--~~~~~--lp~~i~~L~~L~~L~l~~~~~l~~l-p~~i~~l~~L----~~L~l~~~~l~~lp~~i~ 674 (976)
.++++.+|++|++ +.+.. +|..++++++|++|++++|. +..+ |..++.+++| ++|+++.|.+..++.+..
T Consensus 119 ~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~ 197 (570)
T 2z63_A 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197 (570)
T ss_dssp SCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT
T ss_pred cccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcccCCCCceecCHHHh
Confidence 6999999999999 45554 78999999999999999998 6655 5678888888 889998888887765543
Q ss_pred CCCCCCcCC
Q 002044 675 RLTSLRTLS 683 (976)
Q Consensus 675 ~l~~L~~L~ 683 (976)
...+|+.|.
T Consensus 198 ~~~~L~~L~ 206 (570)
T 2z63_A 198 KEIRLHKLT 206 (570)
T ss_dssp TTCEEEEEE
T ss_pred ccCcceeEe
Confidence 333555553
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=1.1e-21 Score=226.82 Aligned_cols=326 Identities=19% Similarity=0.242 Sum_probs=235.4
Q ss_pred cccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccccCcc
Q 002044 548 FYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLPET 625 (976)
Q Consensus 548 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp~~ 625 (976)
..++++++|.+.++.+... +. +..+++|++|+|+ ++.+..+|. ++++.+|++|++ +.+..+|.
T Consensus 43 ~~l~~l~~L~l~~~~i~~l------~~-~~~l~~L~~L~Ls------~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~- 107 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSI------DG-VEYLNNLTQINFS------NNQLTDITP-LKNLTKLVDILMNNNQIADITP- 107 (466)
T ss_dssp HHHHTCCEEECCSSCCCCC------TT-GGGCTTCCEEECC------SSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-
T ss_pred hHhccccEEecCCCCCccC------cc-hhhhcCCCEEECC------CCccCCchh-hhccccCCEEECCCCccccChh-
Confidence 3568899999999876442 22 7889999999999 666777776 999999999999 66777777
Q ss_pred ccccCCccEEecCCCCCCcccchhhcccCCCcEEEecccccccCcccccCCCCCCcCCceEEecCCCCCCCccccccccc
Q 002044 626 CCELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLEYMPKGIERLTSLRTLSEFVVVNGSGKYGSKACNLEGLR 705 (976)
Q Consensus 626 i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~ 705 (976)
+.++++|++|++++|. +..+|. +.++++|++|++++|.+..+| .++.+++|+.|.+. .. ... ...+..++
T Consensus 108 ~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~-~~-~~~-----~~~~~~l~ 177 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFG-NQ-VTD-----LKPLANLT 177 (466)
T ss_dssp GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEE-ES-CCC-----CGGGTTCT
T ss_pred hcCCCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecC-Cc-ccC-----chhhccCC
Confidence 9999999999999997 888876 899999999999988898886 48899999988753 21 221 11122333
Q ss_pred ccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEeecCC
Q 002044 706 YLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITGFKG 785 (976)
Q Consensus 706 ~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 785 (976)
. |+ .+.+.+.. +... ..+..+++|+.|+++.+..... ..+..+++|+.|++++|..
T Consensus 178 ~---L~-~L~l~~n~-l~~~-----~~l~~l~~L~~L~l~~n~l~~~--------------~~~~~l~~L~~L~l~~n~l 233 (466)
T 1o6v_A 178 T---LE-RLDISSNK-VSDI-----SVLAKLTNLESLIATNNQISDI--------------TPLGILTNLDELSLNGNQL 233 (466)
T ss_dssp T---CC-EEECCSSC-CCCC-----GGGGGCTTCSEEECCSSCCCCC--------------GGGGGCTTCCEEECCSSCC
T ss_pred C---CC-EEECcCCc-CCCC-----hhhccCCCCCEEEecCCccccc--------------ccccccCCCCEEECCCCCc
Confidence 3 32 34443322 2222 1256677888888877653310 0134467888888888877
Q ss_pred CCCCcccccccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceEeCccccCCCcCcccccccCCCCCCCCCccC
Q 002044 786 RTLMLSWIVSLNKLKKLRLLFCDKCEVMPALGILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIHIQDGSMSSSSSSSAN 865 (976)
Q Consensus 786 ~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~ 865 (976)
..+ ..+..+++|+.|++++|... .++.+..+++|+.|++++|. +..++. .
T Consensus 234 ~~~--~~l~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~-l~~~~~--------------------------~ 283 (466)
T 1o6v_A 234 KDI--GTLASLTNLTDLDLANNQIS-NLAPLSGLTKLTELKLGANQ-ISNISP--------------------------L 283 (466)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCC-CCGGGTTCTTCSEEECCSSC-CCCCGG--------------------------G
T ss_pred ccc--hhhhcCCCCCEEECCCCccc-cchhhhcCCCCCEEECCCCc-cCcccc--------------------------c
Confidence 665 35667888888888888543 33447788888888888775 322221 1
Q ss_pred ccCCccceeeecccccccccccCCCccccCCCcceEeeecCCCCCCCCcCCCCCCCCCeEEEccCcchHHhhccCCCCCc
Q 002044 866 IAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNSLPDQLLQSTTLEELEIIRCPILEERFKKDTGEDW 945 (976)
Q Consensus 866 ~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 945 (976)
..+++|+.|.+.++. +..+.. +..+++|+.|++++|. +..++. +..+++|+.|++++| .+... ..+
T Consensus 284 ~~l~~L~~L~L~~n~-l~~~~~----~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n-----~l~~~--~~l 349 (466)
T 1o6v_A 284 AGLTALTNLELNENQ-LEDISP----ISNLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFYNN-----KVSDV--SSL 349 (466)
T ss_dssp TTCTTCSEEECCSSC-CSCCGG----GGGCTTCSEEECCSSC-CSCCGG-GGGCTTCCEEECCSS-----CCCCC--GGG
T ss_pred cCCCccCeEEcCCCc-ccCchh----hcCCCCCCEEECcCCc-CCCchh-hccCccCCEeECCCC-----ccCCc--hhh
Confidence 258899999998743 332221 5689999999999996 666655 678999999999999 33322 356
Q ss_pred ccccCCCceeecccccccCcc
Q 002044 946 SKITHIPKIKIHGEYVQGSPP 966 (976)
Q Consensus 946 ~~i~~l~~l~~~~n~~~~~~~ 966 (976)
..++++..+++++|.+.+.+|
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 350 ANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp TTCTTCCEEECCSSCCCBCGG
T ss_pred ccCCCCCEEeCCCCccCccch
Confidence 678999999999999999887
No 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=6.1e-22 Score=234.61 Aligned_cols=392 Identities=18% Similarity=0.144 Sum_probs=233.3
Q ss_pred CCCCCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccC-ccccCCCccceecC-
Q 002044 539 YKNSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIP-KGIKKLRHLRYLKL- 616 (976)
Q Consensus 539 ~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp-~~i~~L~~Lr~L~L- 616 (976)
....+|..+. ++|++|++++|.+...... .|.++++|++|+|+ ++.+..++ ..++++.+|++|++
T Consensus 16 ~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~-----~~~~l~~L~~L~Ls------~n~i~~~~~~~~~~l~~L~~L~Ls 82 (549)
T 2z81_A 16 SFTSIPSGLT--AAMKSLDLSFNKITYIGHG-----DLRACANLQVLILK------SSRINTIEGDAFYSLGSLEHLDLS 82 (549)
T ss_dssp CCSSCCSCCC--TTCCEEECCSSCCCEECSS-----TTSSCTTCCEEECT------TSCCCEECTTTTTTCTTCCEEECT
T ss_pred ccccccccCC--CCccEEECcCCccCccChh-----hhhcCCcccEEECC------CCCcCccChhhccccccCCEEECC
Confidence 4445565443 7899999999987654322 27899999999999 55666665 67999999999999
Q ss_pred -ccccccCcc-ccccCCccEEecCCCCCCcc--cchhhcccCCCcEEEecccc-cccCc-ccccCCCCCCcCCceEEecC
Q 002044 617 -YLVEKLPET-CCELLNLQTLNMCGSPGLKR--LPQGIGKLINLRHLMFEVDY-LEYMP-KGIERLTSLRTLSEFVVVNG 690 (976)
Q Consensus 617 -~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~--lp~~i~~l~~L~~L~l~~~~-l~~lp-~~i~~l~~L~~L~~~~~~~~ 690 (976)
+.+..+|.. ++++++|++|++++|. +.. .|..++++++|++|++++|. +..+| ..++.+++|+.|++..+. .
T Consensus 83 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l 160 (549)
T 2z81_A 83 DNHLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-L 160 (549)
T ss_dssp TSCCCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-C
T ss_pred CCccCccCHHHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc-c
Confidence 677888765 9999999999999997 663 57789999999999997776 67776 478999999999866543 3
Q ss_pred CCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCC-----CC----------
Q 002044 691 SGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVG-----MK---------- 755 (976)
Q Consensus 691 ~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-----~~---------- 755 (976)
.+..+.....+..|+ .+.+.... ....... .+..+++|+.|+++.+...... ..
T Consensus 161 ~~~~~~~l~~l~~L~-------~L~l~~n~-~~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~ 229 (549)
T 2z81_A 161 RNYQSQSLKSIRDIH-------HLTLHLSE-SAFLLEI---FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 229 (549)
T ss_dssp CEECTTTTTTCSEEE-------EEEEECSB-STTHHHH---HHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEE
T ss_pred cccChhhhhccccCc-------eEecccCc-ccccchh---hHhhcccccEEEccCCccccccccccchhhhhhccccee
Confidence 332333333333333 22232211 1111111 1223556777777665432110 00
Q ss_pred ----ccchhhHHHHhhcCCCCCCCceEEEeecCCCCCC--------------------------cc---------ccccc
Q 002044 756 ----DENEANHEAVCEALQPPPNLESLQITGFKGRTLM--------------------------LS---------WIVSL 796 (976)
Q Consensus 756 ----~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~--------------------------p~---------~~~~l 796 (976)
.........+...+..+++|+.|++.+|...... |. ....+
T Consensus 230 l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~ 309 (549)
T 2z81_A 230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL 309 (549)
T ss_dssp EESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHS
T ss_pred ccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhc
Confidence 0001112223333334455555555554432210 00 01123
Q ss_pred ccccEEEEeCCCCCCCCCC-C-CCCCCcceeeccccccceEeCc---cccCCCcCcccccccCCCCCCCC-CccCccCCc
Q 002044 797 NKLKKLRLLFCDKCEVMPA-L-GILPSLEVLKIRFMKSVKRVGN---EFLGTEISDHIHIQDGSMSSSSS-SSANIAFPK 870 (976)
Q Consensus 797 ~~L~~L~L~~~~~~~~l~~-l-~~L~~L~~L~L~~~~~l~~~~~---~~~~~~~~~~l~l~~~~~~~~~~-~~~~~~fp~ 870 (976)
.+|+.|++++|. +..+|. + +.+++|++|+|++|.....++. .+.....+..+++++|.+..... ......+++
T Consensus 310 ~~L~~L~l~~n~-l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~ 388 (549)
T 2z81_A 310 EKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388 (549)
T ss_dssp TTCCEEEEESSC-CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTT
T ss_pred ccceEEEeccCc-cccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCC
Confidence 466677777664 334442 2 3578888888888763332221 12334556677777776644321 011235777
Q ss_pred cceeeecccccccccccCCCccccCCCcceEeeecCCCCCCCCcCC------------------CCCCCCCeEEEccCcc
Q 002044 871 LKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNSLPDQL------------------LQSTTLEELEIIRCPI 932 (976)
Q Consensus 871 L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l------------------~~l~~L~~L~l~~c~~ 932 (976)
|+.|.+.++ .+. ..|..+..+++|+.|++++|. ++.+|..+ ..+++|++|++++|
T Consensus 389 L~~L~Ls~N-~l~---~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-- 461 (549)
T 2z81_A 389 LTSLDISRN-TFH---PMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-- 461 (549)
T ss_dssp CCEEECTTC-CCC---CCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS--
T ss_pred CCEEECCCC-CCc---cCChhhcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC--
Confidence 777777764 222 223334566777777777765 55544332 14566666666666
Q ss_pred hHHhhccCCCCCcccccCCCceeecccccccCcchhh
Q 002044 933 LEERFKKDTGEDWSKITHIPKIKIHGEYVQGSPPLLK 969 (976)
Q Consensus 933 l~~~~~~~~~~~~~~i~~l~~l~~~~n~~~~~~~~~~ 969 (976)
++.... .+...+.+..+++++|.+++.+|..+
T Consensus 462 ---~l~~ip--~~~~l~~L~~L~Ls~N~l~~~~~~~~ 493 (549)
T 2z81_A 462 ---KLKTLP--DASLFPVLLVMKISRNQLKSVPDGIF 493 (549)
T ss_dssp ---CCSSCC--CGGGCTTCCEEECCSSCCCCCCTTGG
T ss_pred ---ccCcCC--CcccCccCCEEecCCCccCCcCHHHH
Confidence 333221 24567788888888888888877643
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=8.7e-22 Score=227.40 Aligned_cols=360 Identities=16% Similarity=0.168 Sum_probs=213.9
Q ss_pred CceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCc-cc-CccccCCCccceecC--cccccc-Ccc
Q 002044 551 RKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTN-EI-PKGIKKLRHLRYLKL--YLVEKL-PET 625 (976)
Q Consensus 551 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~-~l-p~~i~~L~~Lr~L~L--~~~~~l-p~~ 625 (976)
++|++|++++|.+..... ..|.++++|++|+|++ +.+. .+ |..+.++++|++|+| +.+..+ |..
T Consensus 30 ~~l~~L~Ls~n~i~~~~~-----~~~~~l~~L~~L~L~~------n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 98 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNE-----TSFSRLQDLQFLKVEQ------QTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA 98 (455)
T ss_dssp TTCCEEECCSSCCCEECT-----TTTSSCTTCCEEECCC------CSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTT
T ss_pred CccCEEEecCCccCcCCh-----hHhccCccccEEECcC------CcccceECcccccccccCCEEeCCCCccCccChhh
Confidence 677788887777654322 2267777888888874 3332 33 456777788888888 445554 567
Q ss_pred ccccCCccEEecCCCCCCcc-cchh--hcccCCCcEEEecccccccC-ccc-ccCCCCCCcCCceEEecCCCCCCCcccc
Q 002044 626 CCELLNLQTLNMCGSPGLKR-LPQG--IGKLINLRHLMFEVDYLEYM-PKG-IERLTSLRTLSEFVVVNGSGKYGSKACN 700 (976)
Q Consensus 626 i~~L~~L~~L~l~~~~~l~~-lp~~--i~~l~~L~~L~l~~~~l~~l-p~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~ 700 (976)
++++++|++|++++|. +.. .|.. +.++++|++|++++|.+..+ |.. ++.+++|++|++..+. ..+..+.....
T Consensus 99 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~ 176 (455)
T 3v47_A 99 FNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLN 176 (455)
T ss_dssp TTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGG
T ss_pred ccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhc
Confidence 7778888888888776 443 4444 77778888888877777766 333 6777777777654332 22211111111
Q ss_pred c--ccccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceE
Q 002044 701 L--EGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESL 778 (976)
Q Consensus 701 l--~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 778 (976)
+ ..+..|. +. ...+..+... .........+..+.+|+.|+++++... ......+. .....++|+.|
T Consensus 177 l~~~~L~~L~-l~-~n~l~~~~~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~--------~~~~~~~~-~~~~~~~L~~L 244 (455)
T 3v47_A 177 FQGKHFTLLR-LS-SITLQDMNEY-WLGWEKCGNPFKNTSITTLDLSGNGFK--------ESMAKRFF-DAIAGTKIQSL 244 (455)
T ss_dssp GTTCEEEEEE-CT-TCBCTTCSTT-CTTHHHHCCTTTTCEEEEEECTTSCCC--------HHHHHHHH-HHTTTCCEEEE
T ss_pred cccccccccc-cc-cCcccccchh-hccccccccccccceeeeEecCCCccc--------ccchhhhh-ccccccceeeE
Confidence 1 1111111 00 0011111110 011112223445678888888877543 11112222 22334789999
Q ss_pred EEeecCCCCC----------Cccccc--ccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccccccceEeCccccCCCc
Q 002044 779 QITGFKGRTL----------MLSWIV--SLNKLKKLRLLFCDKCEVMP-ALGILPSLEVLKIRFMKSVKRVGNEFLGTEI 845 (976)
Q Consensus 779 ~L~~~~~~~~----------~p~~~~--~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~ 845 (976)
+++++..... .+..+. ..++|+.|++++|.....+| .++.+++|++|+|++|. +..++...+
T Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~---- 319 (455)
T 3v47_A 245 ILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNAF---- 319 (455)
T ss_dssp ECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTT----
T ss_pred eeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccChhHh----
Confidence 9987754321 011111 23689999999987665544 47889999999999887 444432111
Q ss_pred CcccccccCCCCCCCCCccCccCCccceeeecccccccccccCCCccccCCCcceEeeecCCCCCCCCcCCCCCCCCCeE
Q 002044 846 SDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNSLPDQLLQSTTLEEL 925 (976)
Q Consensus 846 ~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L 925 (976)
..+++|+.|.+.+.. + ....+..+..+++|++|++++|......|..+.++++|++|
T Consensus 320 --------------------~~l~~L~~L~Ls~N~-l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 376 (455)
T 3v47_A 320 --------------------WGLTHLLKLNLSQNF-L--GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376 (455)
T ss_dssp --------------------TTCTTCCEEECCSSC-C--CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred --------------------cCcccCCEEECCCCc-c--CCcChhHhcCcccCCEEECCCCcccccChhhccccccccEE
Confidence 246677777776532 2 22333445678888888888886333346777888888888
Q ss_pred EEccCcchHHhhccCCCCCcccccCCCceeecccccccCcchh
Q 002044 926 EIIRCPILEERFKKDTGEDWSKITHIPKIKIHGEYVQGSPPLL 968 (976)
Q Consensus 926 ~l~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~n~~~~~~~~~ 968 (976)
++++| .+.......+..++.+..+++++|.+.+.+|..
T Consensus 377 ~L~~N-----~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 377 ALDTN-----QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp ECCSS-----CCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred ECCCC-----ccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 88888 555545555667788888888888888887743
No 27
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=2.7e-21 Score=227.32 Aligned_cols=368 Identities=14% Similarity=0.130 Sum_probs=222.6
Q ss_pred CceeEEEEEccCCCCCc-ccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCcccc
Q 002044 528 EKLRHLMLVLGYKNSFP-VSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIK 606 (976)
Q Consensus 528 ~~~r~l~~~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~ 606 (976)
.+++++.+..+....++ ..+..+++|++|++++|.+....+ ..|.++++|++|+|+ ++.+..+|..
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~Ls------~N~l~~lp~~-- 87 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI-----SVFKFNQELEYLDLS------HNKLVKISCH-- 87 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG-----GGGTTCTTCCEEECC------SSCCCEEECC--
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh-----HHhhcccCCCEEecC------CCceeecCcc--
Confidence 56777777777666554 456677777777777776544322 226777777777777 5556666665
Q ss_pred CCCccceecC--ccccc--cCccccccCCccEEecCCCCCCcccchhhcccCCC--cEEEeccccc---ccCcccccC--
Q 002044 607 KLRHLRYLKL--YLVEK--LPETCCELLNLQTLNMCGSPGLKRLPQGIGKLINL--RHLMFEVDYL---EYMPKGIER-- 675 (976)
Q Consensus 607 ~L~~Lr~L~L--~~~~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L--~~L~l~~~~l---~~lp~~i~~-- 675 (976)
.+.+|++|++ +.+.. +|..++++++|++|++++|. +.. ..+..+++| ++|+++.|.+ ...|..++.
T Consensus 88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164 (520)
T ss_dssp CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeecccccccccccccccccc
Confidence 6777777777 44544 45677777777777777776 443 345666666 7777765554 222333332
Q ss_pred ------------------------CCCCCcCCceEEecCCC------CCCCccccccccccc------------------
Q 002044 676 ------------------------LTSLRTLSEFVVVNGSG------KYGSKACNLEGLRYL------------------ 707 (976)
Q Consensus 676 ------------------------l~~L~~L~~~~~~~~~~------~~~~~~~~l~~L~~L------------------ 707 (976)
+++|+.|++..+..... ..+ ....+..|+.|
T Consensus 165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~ 243 (520)
T 2z7x_B 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQL 243 (520)
T ss_dssp EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHH
T ss_pred cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHH
Confidence 33344443322110000 000 00011111111
Q ss_pred ---ccCCCceEEcCcCCCCChhhHHhccC-----CCCCCCceEEEEecCCCCCCCCccchhhHHHH--------------
Q 002044 708 ---NHLRGSLKIRGLGNVTDIDEAKSAHL-----DKKKNLVVLILRFNKEAPVGMKDENEANHEAV-------------- 765 (976)
Q Consensus 708 ---~~L~~~l~i~~l~~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-------------- 765 (976)
..|+ .+.+.+..- .......+ .++++|+.++++.+... .. .......
T Consensus 244 ~~~~~L~-~L~l~~n~l----~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~-~p-----~~~~~~~~~~~~L~~L~l~~n 312 (520)
T 2z7x_B 244 VWHTTVW-YFSISNVKL----QGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FP-----QSYIYEIFSNMNIKNFTVSGT 312 (520)
T ss_dssp HHTSSCS-EEEEEEEEE----ESCCCCCCCCCCSCCCCEEEEEEEEECCCC-SC-----THHHHHHHHTCCCSEEEEESS
T ss_pred hhhCccc-EEEeecccc----cCccccchhhcccccCceeEecccccccee-cc-----hhhhhcccccCceeEEEcCCC
Confidence 0122 222222110 00001112 45555666666554421 00 0000000
Q ss_pred --h--hcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCC--CCC-CCCCCCCcceeeccccccceEeCc
Q 002044 766 --C--EALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCE--VMP-ALGILPSLEVLKIRFMKSVKRVGN 838 (976)
Q Consensus 766 --~--~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~--~l~-~l~~L~~L~~L~L~~~~~l~~~~~ 838 (976)
. .....+++|+.|++++|.+....|.++..+++|+.|+|++|.... .+| .++.+++|++|++++|.-...++.
T Consensus 313 ~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~ 392 (520)
T 2z7x_B 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392 (520)
T ss_dssp CCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG
T ss_pred ccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccccc
Confidence 0 001567899999999999888668899999999999999997543 233 378899999999999884333665
Q ss_pred c-ccCCCcCcccccccCCCCCCCCCccCccC-CccceeeecccccccccccCCCccccCCCcceEeeecCCCCCCCCcC-
Q 002044 839 E-FLGTEISDHIHIQDGSMSSSSSSSANIAF-PKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNSLPDQ- 915 (976)
Q Consensus 839 ~-~~~~~~~~~l~l~~~~~~~~~~~~~~~~f-p~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~- 915 (976)
. +.....+..+++++|.+....+. .+ ++|+.|.+.++ .+. ..|..+..+++|++|++++|. ++.+|..
T Consensus 393 ~~~~~l~~L~~L~Ls~N~l~~~~~~----~l~~~L~~L~Ls~N-~l~---~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~ 463 (520)
T 2z7x_B 393 GDCSWTKSLLSLNMSSNILTDTIFR----CLPPRIKVLDLHSN-KIK---SIPKQVVKLEALQELNVASNQ-LKSVPDGI 463 (520)
T ss_dssp CSCCCCTTCCEEECCSSCCCGGGGG----SCCTTCCEEECCSS-CCC---CCCGGGGGCTTCCEEECCSSC-CCCCCTTT
T ss_pred chhccCccCCEEECcCCCCCcchhh----hhcccCCEEECCCC-ccc---ccchhhhcCCCCCEEECCCCc-CCccCHHH
Confidence 4 44456778888988887654332 34 68999998875 233 334445689999999999986 8899976
Q ss_pred CCCCCCCCeEEEccCcc
Q 002044 916 LLQSTTLEELEIIRCPI 932 (976)
Q Consensus 916 l~~l~~L~~L~l~~c~~ 932 (976)
+..+++|+.|++++||-
T Consensus 464 ~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 464 FDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp TTTCTTCCEEECCSSCB
T ss_pred hccCCcccEEECcCCCC
Confidence 88899999999999964
No 28
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=2.6e-21 Score=235.34 Aligned_cols=122 Identities=6% Similarity=0.059 Sum_probs=76.6
Q ss_pred cccCCCcCcccccccCCCCCCCCCccCccCCccceeeeccccccccccc------CCCccccCCCcceEeeecCCCCCCC
Q 002044 839 EFLGTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDF------GKEDITIMPQLSSMKISYCSKLNSL 912 (976)
Q Consensus 839 ~~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~------~~~~~~~l~~L~~L~l~~c~~L~~l 912 (976)
.+.....+..+++++|.+...... ....+++|+.|.+.+.. +..+.. ....+..+++|+.|++++|. +..+
T Consensus 475 ~~~~l~~L~~L~Ls~N~l~~i~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i 551 (680)
T 1ziw_A 475 PFQPLRNLTILDLSNNNIANINDD-MLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEI 551 (680)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCC
T ss_pred ccccCCCCCEEECCCCCCCcCChh-hhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCC
Confidence 333444455566666655433221 12345666666665532 222110 01124577888888888875 7777
Q ss_pred Cc-CCCCCCCCCeEEEccCcchHHhhccCCCCCcccccCCCceeecccccccCcchh
Q 002044 913 PD-QLLQSTTLEELEIIRCPILEERFKKDTGEDWSKITHIPKIKIHGEYVQGSPPLL 968 (976)
Q Consensus 913 p~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~n~~~~~~~~~ 968 (976)
|. .+.++++|+.|++++| ++....+..+..++.+..+++++|.+++.+|..
T Consensus 552 ~~~~~~~l~~L~~L~Ls~N-----~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 603 (680)
T 1ziw_A 552 PVEVFKDLFELKIIDLGLN-----NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603 (680)
T ss_dssp CTTTTTTCTTCCEEECCSS-----CCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHH
T ss_pred CHHHcccccCcceeECCCC-----CCCcCCHhHhCCCCCCCEEECCCCcCCccChhH
Confidence 75 4677888888888888 555555555677888889999999888887764
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=2.4e-21 Score=218.60 Aligned_cols=302 Identities=17% Similarity=0.149 Sum_probs=191.0
Q ss_pred ccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccC-ccccCCCccceecC--ccccccC-c
Q 002044 549 YARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIP-KGIKKLRHLRYLKL--YLVEKLP-E 624 (976)
Q Consensus 549 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp-~~i~~L~~Lr~L~L--~~~~~lp-~ 624 (976)
.+++++.|.+.++.+... ++.+|.++++|++|+|+ ++.+..+| ..++.+++|++|++ +.+..+| .
T Consensus 43 ~l~~l~~l~l~~~~l~~l-----~~~~~~~l~~L~~L~L~------~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 111 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKL-----PAALLDSFRQVELLNLN------DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 111 (390)
T ss_dssp GGCCCSEEEEESCEESEE-----CTHHHHHCCCCSEEECT------TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCCceEEEecCCchhhC-----ChhHhcccccCcEEECC------CCcccccChhhccCCCCcCEEECCCCCCCcCCHH
Confidence 467888888888775432 23347788888888888 55566665 47888888888888 5666665 4
Q ss_pred cccccCCccEEecCCCCCCcccchhh-cccCCCcEEEecccccccCcc-cccCCCCCCcCCceEEecCCCCCCCcccccc
Q 002044 625 TCCELLNLQTLNMCGSPGLKRLPQGI-GKLINLRHLMFEVDYLEYMPK-GIERLTSLRTLSEFVVVNGSGKYGSKACNLE 702 (976)
Q Consensus 625 ~i~~L~~L~~L~l~~~~~l~~lp~~i-~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~ 702 (976)
.++++++|++|++++|. +..+|..+ .++++|++|++++|.+..++. .++.+++|++|++..+. ... ..+.
T Consensus 112 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~------~~~~ 183 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTH------VDLS 183 (390)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSB------CCGG
T ss_pred HhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCc------cccc
Confidence 57888888888888887 77888764 788888888888888877754 47788888887654332 111 0112
Q ss_pred cccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEee
Q 002044 703 GLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITG 782 (976)
Q Consensus 703 ~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~ 782 (976)
.++.|. .+.+... .+. .+....+|+.|+++.+.... + ....+++|+.|++++
T Consensus 184 ~l~~L~----~L~l~~n-~l~--------~~~~~~~L~~L~l~~n~l~~-------------~--~~~~~~~L~~L~l~~ 235 (390)
T 3o6n_A 184 LIPSLF----HANVSYN-LLS--------TLAIPIAVEELDASHNSINV-------------V--RGPVNVELTILKLQH 235 (390)
T ss_dssp GCTTCS----EEECCSS-CCS--------EEECCSSCSEEECCSSCCCE-------------E--ECCCCSSCCEEECCS
T ss_pred cccccc----eeecccc-ccc--------ccCCCCcceEEECCCCeeee-------------c--cccccccccEEECCC
Confidence 222221 2221110 000 11223456677766554320 0 112245777777777
Q ss_pred cCCCCCCcccccccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccccccceEeCccccCCCcCcccccccCCCCCCCC
Q 002044 783 FKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMP-ALGILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIHIQDGSMSSSSS 861 (976)
Q Consensus 783 ~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~ 861 (976)
|.+... .++..+++|+.|+|++|......| .++.+++|++|+|++|. ++.++..+
T Consensus 236 n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~--------------------- 291 (390)
T 3o6n_A 236 NNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG--------------------- 291 (390)
T ss_dssp SCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSS---------------------
T ss_pred CCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCccc---------------------
Confidence 776653 466677777777777775444333 46677777777777765 44433211
Q ss_pred CccCccCCccceeeecccccccccccCCCccccCCCcceEeeecCCCCCCCCcCCCCCCCCCeEEEccCcc
Q 002044 862 SSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNSLPDQLLQSTTLEELEIIRCPI 932 (976)
Q Consensus 862 ~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~ 932 (976)
..+|+|+.|.+.++. +.. .+..+..+++|+.|++++|+ +..+| +..+++|+.|++++|+-
T Consensus 292 ----~~l~~L~~L~L~~n~-l~~---~~~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 292 ----QPIPTLKVLDLSHNH-LLH---VERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp ----SCCTTCCEEECCSSC-CCC---CGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCE
T ss_pred ----CCCCCCCEEECCCCc-cee---cCccccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCCc
Confidence 247788888887642 322 23335577888888888876 66665 55678888888888854
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=1.1e-20 Score=216.38 Aligned_cols=344 Identities=18% Similarity=0.167 Sum_probs=209.0
Q ss_pred cccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccccC
Q 002044 546 SIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLP 623 (976)
Q Consensus 546 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp 623 (976)
.+..+++|++|++++|.+.+.. . +..+++|++|+++ ++.+..+| ++.+++|++|++ +.+..+|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~------~-l~~l~~L~~L~Ls------~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~ 101 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT------G-IEKLTGLTKLICT------SNNITTLD--LSQNTNLTYLACDSNKLTNLD 101 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT------T-GGGCTTCSEEECC------SSCCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred ChhHcCCCCEEEccCCCcccCh------h-hcccCCCCEEEcc------CCcCCeEc--cccCCCCCEEECcCCCCceee
Confidence 4566788888888888765431 1 6778888888888 55555665 778888888888 5566665
Q ss_pred ccccccCCccEEecCCCCCCcccchhhcccCCCcEEEecccccccCcccccCCCCCCcCCceEEecCCCCCCCccccccc
Q 002044 624 ETCCELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLEYMPKGIERLTSLRTLSEFVVVNGSGKYGSKACNLEG 703 (976)
Q Consensus 624 ~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~ 703 (976)
++++++|++|++++|. +..+| ++.+++|++|+++.|.++.+| ++.+++|+.|++..+. ..+.. .+..
T Consensus 102 --~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~-~~~~~-----~~~~ 168 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNK-KITKL-----DVTP 168 (457)
T ss_dssp --CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCS-CCCCC-----CCTT
T ss_pred --cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCC-ccccc-----cccc
Confidence 7788888888888886 77676 788888888888888887764 6777777777643332 11100 1222
Q ss_pred ccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEeec
Q 002044 704 LRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITGF 783 (976)
Q Consensus 704 L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 783 (976)
+..|+ .+.+.+. .++.. .+..+++|+.|.++++..... .+..+++|+.|++++|
T Consensus 169 l~~L~----~L~ls~n-~l~~l------~l~~l~~L~~L~l~~N~l~~~---------------~l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 169 QTQLT----TLDCSFN-KITEL------DVSQNKLLNRLNCDTNNITKL---------------DLNQNIQLTFLDCSSN 222 (457)
T ss_dssp CTTCC----EEECCSS-CCCCC------CCTTCTTCCEEECCSSCCSCC---------------CCTTCTTCSEEECCSS
T ss_pred CCcCC----EEECCCC-cccee------ccccCCCCCEEECcCCcCCee---------------ccccCCCCCEEECcCC
Confidence 22222 2222221 11211 155667788887776653310 2556678888888888
Q ss_pred CCCCCCcccccccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceEeCccccCCCcCcccccccCCCCCCCCCc
Q 002044 784 KGRTLMLSWIVSLNKLKKLRLLFCDKCEVMPALGILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIHIQDGSMSSSSSSS 863 (976)
Q Consensus 784 ~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 863 (976)
.+..+ | +..+++|+.|++++|.... +| .+.+++|+.|+++++. + ..+++++|......+
T Consensus 223 ~l~~i-p--~~~l~~L~~L~l~~N~l~~-~~-~~~l~~L~~L~l~~n~-L-------------~~L~l~~n~~~~~~~-- 281 (457)
T 3bz5_A 223 KLTEI-D--VTPLTQLTYFDCSVNPLTE-LD-VSTLSKLTTLHCIQTD-L-------------LEIDLTHNTQLIYFQ-- 281 (457)
T ss_dssp CCSCC-C--CTTCTTCSEEECCSSCCSC-CC-CTTCTTCCEEECTTCC-C-------------SCCCCTTCTTCCEEE--
T ss_pred ccccc-C--ccccCCCCEEEeeCCcCCC-cC-HHHCCCCCEEeccCCC-C-------------CEEECCCCccCCccc--
Confidence 77775 5 6677888888888875433 33 4556666666555432 2 222233332222111
Q ss_pred cCccCCccceeeecccccccccccCCC-----ccccCCCcceEeeecCCCCCCCCcCCCCCCCCCeEEEccCcchH-Hhh
Q 002044 864 ANIAFPKLKELKFFCLDEWEEWDFGKE-----DITIMPQLSSMKISYCSKLNSLPDQLLQSTTLEELEIIRCPILE-ERF 937 (976)
Q Consensus 864 ~~~~fp~L~~L~l~~l~~l~~~~~~~~-----~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~-~~~ 937 (976)
...+++|+.|.+.++..+..+..... .+..+++|+.|++++|. ++.+| +.++++|+.|++++|.--. ..+
T Consensus 282 -~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~-l~~l~--l~~l~~L~~L~l~~N~l~~l~~L 357 (457)
T 3bz5_A 282 -AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE-LTELD--VSHNTKLKSLSCVNAHIQDFSSV 357 (457)
T ss_dssp -CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC-CSCCC--CTTCTTCSEEECCSSCCCBCTTG
T ss_pred -ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCc-ccccc--cccCCcCcEEECCCCCCCCcccc
Confidence 12467777777776654433321100 14466888888888875 77774 7788999999998873100 000
Q ss_pred ccC--CCCCc---ccccCCCceeecccccccCcchh
Q 002044 938 KKD--TGEDW---SKITHIPKIKIHGEYVQGSPPLL 968 (976)
Q Consensus 938 ~~~--~~~~~---~~i~~l~~l~~~~n~~~~~~~~~ 968 (976)
... ....+ .....++.+++++|.++|.+|..
T Consensus 358 ~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 358 GKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp GGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTT
T ss_pred ccccccCCcEEecceeeecCccccccCcEEEEcChh
Confidence 000 00000 23356788899999999888763
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=2e-21 Score=215.65 Aligned_cols=63 Identities=11% Similarity=0.075 Sum_probs=28.8
Q ss_pred ccCCCcceEeeecCCCCCCCCcCCCCCCCCCeEEEccCcchHHhhccCCCCCcccccCCCceeecccccc
Q 002044 893 TIMPQLSSMKISYCSKLNSLPDQLLQSTTLEELEIIRCPILEERFKKDTGEDWSKITHIPKIKIHGEYVQ 962 (976)
Q Consensus 893 ~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~n~~~ 962 (976)
..+++|+.|++++|......|..+..+++|+.|++++|+ +....+ +..++.+.++++++|.++
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-----l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-----ITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-----CCCCGG--GGGCTTCSEESSSCC---
T ss_pred cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-----cccccC--hhhhhccceeehhhhccc
Confidence 345555555555554222233444455555555555552 221111 344555555555555543
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=1.1e-20 Score=216.52 Aligned_cols=303 Identities=17% Similarity=0.133 Sum_probs=207.2
Q ss_pred HhcCCCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccccCccccccCCccEEecCCCCCCcccchhhccc
Q 002044 576 FDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLPETCCELLNLQTLNMCGSPGLKRLPQGIGKL 653 (976)
Q Consensus 576 ~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l 653 (976)
+.++++|++|+++ ++.+..+| .++.+++|++|++ +.+..+| ++.+++|++|++++|. +..+| ++++
T Consensus 38 ~~~l~~L~~L~Ls------~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l 105 (457)
T 3bz5_A 38 EEQLATLTSLDCH------NSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPL 105 (457)
T ss_dssp HHHHTTCCEEECC------SSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTC
T ss_pred hhHcCCCCEEEcc------CCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCCC
Confidence 5678999999999 56677777 6999999999999 6777776 8999999999999998 88876 8999
Q ss_pred CCCcEEEecccccccCcccccCCCCCCcCCceEEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccC
Q 002044 654 INLRHLMFEVDYLEYMPKGIERLTSLRTLSEFVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHL 733 (976)
Q Consensus 654 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l 733 (976)
++|++|++++|.+..+| ++.+++|+.|++..+. ..+ . .+ ..+..|+ .+.+.....+... .+
T Consensus 106 ~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~-----l-~l---~~l~~L~-~L~l~~n~~~~~~------~~ 166 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTE-----I-DV---SHNTQLT-ELDCHLNKKITKL------DV 166 (457)
T ss_dssp TTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC-CSC-----C-CC---TTCTTCC-EEECTTCSCCCCC------CC
T ss_pred CcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc-cce-----e-cc---ccCCcCC-EEECCCCCccccc------cc
Confidence 99999999999999886 8889999988754332 221 0 12 2222222 3444333222221 35
Q ss_pred CCCCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCC
Q 002044 734 DKKKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVM 813 (976)
Q Consensus 734 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l 813 (976)
..+++|+.|+++++.... + .+..+++|+.|++++|.+..+ + ++.+++|+.|++++|.... +
T Consensus 167 ~~l~~L~~L~ls~n~l~~-------------l--~l~~l~~L~~L~l~~N~l~~~-~--l~~l~~L~~L~Ls~N~l~~-i 227 (457)
T 3bz5_A 167 TPQTQLTTLDCSFNKITE-------------L--DVSQNKLLNRLNCDTNNITKL-D--LNQNIQLTFLDCSSNKLTE-I 227 (457)
T ss_dssp TTCTTCCEEECCSSCCCC-------------C--CCTTCTTCCEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-C
T ss_pred ccCCcCCEEECCCCccce-------------e--ccccCCCCCEEECcCCcCCee-c--cccCCCCCEEECcCCcccc-c
Confidence 566778888887765331 1 145667788888888877665 3 5677888888888875443 5
Q ss_pred CCCCCCCCcceeeccccccceEeCccccCCCcCcccccccCCCCCCCCCccCccCCccce----------eeeccccccc
Q 002044 814 PALGILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIHIQDGSMSSSSSSSANIAFPKLKE----------LKFFCLDEWE 883 (976)
Q Consensus 814 ~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~----------L~l~~l~~l~ 883 (976)
| ++.+++|++|++++|. ++.++. ..|++|+. |.+.++....
T Consensus 228 p-~~~l~~L~~L~l~~N~-l~~~~~---------------------------~~l~~L~~L~l~~n~L~~L~l~~n~~~~ 278 (457)
T 3bz5_A 228 D-VTPLTQLTYFDCSVNP-LTELDV---------------------------STLSKLTTLHCIQTDLLEIDLTHNTQLI 278 (457)
T ss_dssp C-CTTCTTCSEEECCSSC-CSCCCC---------------------------TTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred C-ccccCCCCEEEeeCCc-CCCcCH---------------------------HHCCCCCEEeccCCCCCEEECCCCccCC
Confidence 5 7778888888888775 333321 13444544 4444433222
Q ss_pred ccccCCCccccCCCcceEeeecCCCCCCCCcC--------CCCCCCCCeEEEccCcchHHhhccCCCCCcccccCCCcee
Q 002044 884 EWDFGKEDITIMPQLSSMKISYCSKLNSLPDQ--------LLQSTTLEELEIIRCPILEERFKKDTGEDWSKITHIPKIK 955 (976)
Q Consensus 884 ~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~--------l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l~~l~ 955 (976)
.+. ...+++|+.|++++|+.++.+|.. +.++++|+.|++++| ++.. .++...+.+..++
T Consensus 279 ~~~-----~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-----~l~~---l~l~~l~~L~~L~ 345 (457)
T 3bz5_A 279 YFQ-----AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-----ELTE---LDVSHNTKLKSLS 345 (457)
T ss_dssp EEE-----CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-----CCSC---CCCTTCTTCSEEE
T ss_pred ccc-----ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-----cccc---cccccCCcCcEEE
Confidence 222 247899999999999887776642 334456666776666 3333 2477788999999
Q ss_pred ecccccccCcchhhcc
Q 002044 956 IHGEYVQGSPPLLKSI 971 (976)
Q Consensus 956 ~~~n~~~~~~~~~~~~ 971 (976)
+++|.+++ +|.+..+
T Consensus 346 l~~N~l~~-l~~L~~L 360 (457)
T 3bz5_A 346 CVNAHIQD-FSSVGKI 360 (457)
T ss_dssp CCSSCCCB-CTTGGGS
T ss_pred CCCCCCCC-ccccccc
Confidence 99999997 4444444
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=2.9e-21 Score=214.35 Aligned_cols=304 Identities=16% Similarity=0.174 Sum_probs=211.2
Q ss_pred cccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccccC
Q 002044 546 SIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLP 623 (976)
Q Consensus 546 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp 623 (976)
....+++|++|.++++.+.... . +..+++|++|+++ ++.+..+|. +..+++|++|++ +.+..+|
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~------~-~~~~~~L~~L~l~------~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~ 104 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQ------G-IEYLTNLEYLNLN------GNQITDISP-LSNLVKLTNLYIGTNKITDIS 104 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCT------T-GGGCTTCCEEECC------SSCCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred cchhcccccEEEEeCCccccch------h-hhhcCCccEEEcc------CCccccchh-hhcCCcCCEEEccCCcccCch
Confidence 3457889999999998865422 2 7889999999999 556667766 899999999999 5667765
Q ss_pred ccccccCCccEEecCCCCCCcccchhhcccCCCcEEEecccccccCcccccCCCCCCcCCceEEecCCCCCCCccccccc
Q 002044 624 ETCCELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLEYMPKGIERLTSLRTLSEFVVVNGSGKYGSKACNLEG 703 (976)
Q Consensus 624 ~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~ 703 (976)
.+.++++|++|++++|. +..+|. +..+++|++|+++++.....+..++.+++|+.|.+..+. ... ...+..
T Consensus 105 -~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~-----~~~~~~ 175 (347)
T 4fmz_A 105 -ALQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKD-----VTPIAN 175 (347)
T ss_dssp -GGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCC-----CGGGGG
T ss_pred -HHcCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCC-----chhhcc
Confidence 58899999999999997 888877 889999999999777444444558888888888654332 111 111222
Q ss_pred ccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEeec
Q 002044 704 LRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITGF 783 (976)
Q Consensus 704 L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 783 (976)
+..|+ .+.+.+.. +.... .+..+++|+.|.++.+..... ..+..+++|+.|++++|
T Consensus 176 ---l~~L~-~L~l~~n~-l~~~~-----~~~~l~~L~~L~l~~n~l~~~--------------~~~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 176 ---LTDLY-SLSLNYNQ-IEDIS-----PLASLTSLHYFTAYVNQITDI--------------TPVANMTRLNSLKIGNN 231 (347)
T ss_dssp ---CTTCS-EEECTTSC-CCCCG-----GGGGCTTCCEEECCSSCCCCC--------------GGGGGCTTCCEEECCSS
T ss_pred ---CCCCC-EEEccCCc-ccccc-----cccCCCccceeecccCCCCCC--------------chhhcCCcCCEEEccCC
Confidence 33333 44443321 22211 155667788888877643311 11455678888888888
Q ss_pred CCCCCCcccccccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceEeCccccCCCcCcccccccCCCCCCCCCc
Q 002044 784 KGRTLMLSWIVSLNKLKKLRLLFCDKCEVMPALGILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIHIQDGSMSSSSSSS 863 (976)
Q Consensus 784 ~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 863 (976)
..... +. +..+++|+.|++++|. ...++.+..+++|++|++++|. ++.++.
T Consensus 232 ~l~~~-~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~~------------------------- 282 (347)
T 4fmz_A 232 KITDL-SP-LANLSQLTWLEIGTNQ-ISDINAVKDLTKLKMLNVGSNQ-ISDISV------------------------- 282 (347)
T ss_dssp CCCCC-GG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCCGG-------------------------
T ss_pred ccCCC-cc-hhcCCCCCEEECCCCc-cCCChhHhcCCCcCEEEccCCc-cCCChh-------------------------
Confidence 87766 44 6778888888888874 3445667788888888888875 333211
Q ss_pred cCccCCccceeeecccccccccccCCCccccCCCcceEeeecCCCCCCCCcCCCCCCCCCeEEEccCc
Q 002044 864 ANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNSLPDQLLQSTTLEELEIIRCP 931 (976)
Q Consensus 864 ~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~ 931 (976)
...+++|+.|.+.++. + ....+..+..+++|+.|++++|+ +..++. +..+++|+.|++++|+
T Consensus 283 -~~~l~~L~~L~L~~n~-l--~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 283 -LNNLSQLNSLFLNNNQ-L--GNEDMEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp -GGGCTTCSEEECCSSC-C--CGGGHHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred -hcCCCCCCEEECcCCc-C--CCcChhHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 1257888888888753 2 22223335678999999999998 666665 7778999999999983
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=2.8e-20 Score=220.44 Aligned_cols=360 Identities=16% Similarity=0.130 Sum_probs=239.7
Q ss_pred ccCceeEEEEEccCCCCCc-ccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCcc
Q 002044 526 SQEKLRHLMLVLGYKNSFP-VSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKG 604 (976)
Q Consensus 526 ~~~~~r~l~~~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~ 604 (976)
.+..++++.+..+....++ ..+..+++|++|++++|.+....+ ..|.++++|++|+|+ ++.+..+|..
T Consensus 50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~Ls------~N~l~~lp~~ 118 (562)
T 3a79_B 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF-----HVFLFNQDLEYLDVS------HNRLQNISCC 118 (562)
T ss_dssp SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT-----TTTTTCTTCCEEECT------TSCCCEECSC
T ss_pred CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH-----HHhCCCCCCCEEECC------CCcCCccCcc
Confidence 4578999999999888765 578899999999999998765433 338899999999999 6778889877
Q ss_pred ccCCCccceecC--ccccccC--ccccccCCccEEecCCCCCCcccchhhcccCCC--cEEEeccccc--c-cCcccccC
Q 002044 605 IKKLRHLRYLKL--YLVEKLP--ETCCELLNLQTLNMCGSPGLKRLPQGIGKLINL--RHLMFEVDYL--E-YMPKGIER 675 (976)
Q Consensus 605 i~~L~~Lr~L~L--~~~~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L--~~L~l~~~~l--~-~lp~~i~~ 675 (976)
.+.+|++|++ +.+..+| ..++++++|++|++++|. +.. ..+..+++| ++|+++.|.+ . ..|..+..
T Consensus 119 --~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~ 193 (562)
T 3a79_B 119 --PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQI 193 (562)
T ss_dssp --CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEE
T ss_pred --ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEeecccccccccCcccccc
Confidence 8999999999 6677765 789999999999999987 554 346666777 9999977766 2 23333333
Q ss_pred CC--------------------------CCCcCCce--------------------------------------------
Q 002044 676 LT--------------------------SLRTLSEF-------------------------------------------- 685 (976)
Q Consensus 676 l~--------------------------~L~~L~~~-------------------------------------------- 685 (976)
+. +|+.|++.
T Consensus 194 l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~ 273 (562)
T 3a79_B 194 PNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF 273 (562)
T ss_dssp CCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH
T ss_pred cCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh
Confidence 22 22222111
Q ss_pred -----------EEecCCCCCCCcccc--cccccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCC
Q 002044 686 -----------VVVNGSGKYGSKACN--LEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPV 752 (976)
Q Consensus 686 -----------~~~~~~~~~~~~~~~--l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 752 (976)
.+. ..+..|..... ...++.|..+ .+....+ .+. ...... +-...+|+.|+++.+...+.
T Consensus 274 ~~~~L~~L~l~~n~-l~~~ip~~~~~~~~~~L~~L~~~--~~~~~~~-~~p--~~~~~~-~~~~~~L~~L~l~~n~~~~~ 346 (562)
T 3a79_B 274 WPRPVEYLNIYNLT-ITERIDREEFTYSETALKSLMIE--HVKNQVF-LFS--KEALYS-VFAEMNIKMLSISDTPFIHM 346 (562)
T ss_dssp TTSSEEEEEEEEEE-ECSCCCCCCCCCCSCSCCEEEEE--EEEECCC-SSC--HHHHHH-HHHTCCCSEEEEESSCCCCC
T ss_pred hcccccEEEEeccE-eeccccchhhhcccccchheehh--hccccee-ecC--hhhhhh-hhccCcceEEEccCCCcccc
Confidence 110 00001100000 0011111000 0000000 000 000000 00113566677666543211
Q ss_pred CCCccchhhHHHHhhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCC----CCCCCCCcceeecc
Q 002044 753 GMKDENEANHEAVCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMP----ALGILPSLEVLKIR 828 (976)
Q Consensus 753 ~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~----~l~~L~~L~~L~L~ 828 (976)
. ....+++|+.|++++|.+....|.++..+++|+.|+|++|... .++ .++.+++|++|+++
T Consensus 347 ~--------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~l~~L~~L~l~ 411 (562)
T 3a79_B 347 V--------------CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVS 411 (562)
T ss_dssp C--------------CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCC-BTTHHHHTTTTCTTCCEEECT
T ss_pred c--------------CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcC-CcccchhhhcCCCCCCEEECC
Confidence 0 1146789999999999988866889999999999999999543 333 47899999999999
Q ss_pred ccccceEeCcc-ccCCCcCcccccccCCCCCCCCCccCccC-CccceeeecccccccccccCCCccccCCCcceEeeecC
Q 002044 829 FMKSVKRVGNE-FLGTEISDHIHIQDGSMSSSSSSSANIAF-PKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYC 906 (976)
Q Consensus 829 ~~~~l~~~~~~-~~~~~~~~~l~l~~~~~~~~~~~~~~~~f-p~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c 906 (976)
+|.-...++.. +.+...+..+++++|.+....+. .+ ++|+.|.+.+. .+. ..|..+..+++|+.|++++|
T Consensus 412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~l~~~L~~L~L~~N-~l~---~ip~~~~~l~~L~~L~L~~N 483 (562)
T 3a79_B 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR----CLPPKVKVLDLHNN-RIM---SIPKDVTHLQALQELNVASN 483 (562)
T ss_dssp TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS----SCCTTCSEEECCSS-CCC---CCCTTTTSSCCCSEEECCSS
T ss_pred CCcCCCccChhhhcCcccCCEEECCCCCCCcchhh----hhcCcCCEEECCCC-cCc---ccChhhcCCCCCCEEECCCC
Confidence 99843336654 34456778888988887654332 34 68999998874 333 33444558999999999998
Q ss_pred CCCCCCCcC-CCCCCCCCeEEEccCcc
Q 002044 907 SKLNSLPDQ-LLQSTTLEELEIIRCPI 932 (976)
Q Consensus 907 ~~L~~lp~~-l~~l~~L~~L~l~~c~~ 932 (976)
. ++.+|.. +..+++|+.|++++||-
T Consensus 484 ~-l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 484 Q-LKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp C-CCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred C-CCCCCHHHHhcCCCCCEEEecCCCc
Confidence 6 8899987 88899999999999863
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=5.6e-21 Score=227.72 Aligned_cols=302 Identities=17% Similarity=0.152 Sum_probs=203.3
Q ss_pred ccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccC-ccccCCCccceecC--ccccccCc-
Q 002044 549 YARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIP-KGIKKLRHLRYLKL--YLVEKLPE- 624 (976)
Q Consensus 549 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp-~~i~~L~~Lr~L~L--~~~~~lp~- 624 (976)
.+.+++.|.+.++.+... ++.+|.++++|++|+|+ ++.+..+| ..++.+.+|++|+| +.+..+|+
T Consensus 49 ~l~~l~~l~l~~~~l~~l-----p~~~~~~l~~L~~L~L~------~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 117 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKL-----PAALLDSFRQVELLNLN------DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 117 (597)
T ss_dssp GGCCCSEEEESSCEESEE-----CTHHHHHCCCCSEEECT------TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cCCCceEEEeeCCCCCCc-----CHHHHccCCCCcEEECC------CCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH
Confidence 467888899888875442 23447888999999998 55566665 47888999999999 56777765
Q ss_pred cccccCCccEEecCCCCCCcccchhh-cccCCCcEEEecccccccCcc-cccCCCCCCcCCceEEecCCCCCCCcccccc
Q 002044 625 TCCELLNLQTLNMCGSPGLKRLPQGI-GKLINLRHLMFEVDYLEYMPK-GIERLTSLRTLSEFVVVNGSGKYGSKACNLE 702 (976)
Q Consensus 625 ~i~~L~~L~~L~l~~~~~l~~lp~~i-~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~ 702 (976)
.++++++|++|+|++|. +..+|..+ +.+++|++|++++|.+..+|+ .++.+++|++|++..+. ..+ ..+.
T Consensus 118 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~------~~~~ 189 (597)
T 3oja_B 118 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTH------VDLS 189 (597)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSB------CCGG
T ss_pred HHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCC------cChh
Confidence 46889999999999987 77888764 889999999998888887765 57888888888654332 111 1122
Q ss_pred cccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEee
Q 002044 703 GLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITG 782 (976)
Q Consensus 703 ~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~ 782 (976)
.+..|. .+.+... .+. .+....+|+.|+++++.... +. ...+++|+.|++++
T Consensus 190 ~l~~L~----~L~l~~n-~l~--------~l~~~~~L~~L~ls~n~l~~-------------~~--~~~~~~L~~L~L~~ 241 (597)
T 3oja_B 190 LIPSLF----HANVSYN-LLS--------TLAIPIAVEELDASHNSINV-------------VR--GPVNVELTILKLQH 241 (597)
T ss_dssp GCTTCS----EEECCSS-CCS--------EEECCTTCSEEECCSSCCCE-------------EE--CSCCSCCCEEECCS
T ss_pred hhhhhh----hhhcccC-ccc--------cccCCchhheeeccCCcccc-------------cc--cccCCCCCEEECCC
Confidence 222222 2222110 011 12233467777777664320 00 11235788888888
Q ss_pred cCCCCCCcccccccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccccccceEeCccccCCCcCcccccccCCCCCCCC
Q 002044 783 FKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMP-ALGILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIHIQDGSMSSSSS 861 (976)
Q Consensus 783 ~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~ 861 (976)
|.+.. +.++..+++|+.|+|++|......| .++.+++|+.|+|++|. +..++..
T Consensus 242 n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~---------------------- 296 (597)
T 3oja_B 242 NNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY---------------------- 296 (597)
T ss_dssp SCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECS----------------------
T ss_pred CCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcc----------------------
Confidence 87665 4667778888888888876554434 47778888888888775 4444321
Q ss_pred CccCccCCccceeeecccccccccccCCCccccCCCcceEeeecCCCCCCCCcCCCCCCCCCeEEEccCcc
Q 002044 862 SSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNSLPDQLLQSTTLEELEIIRCPI 932 (976)
Q Consensus 862 ~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~ 932 (976)
...+|+|+.|.+.++. +. ..+..+..+++|+.|++++|. +..+| +..+++|+.|++++||-
T Consensus 297 ---~~~l~~L~~L~Ls~N~-l~---~i~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 297 ---GQPIPTLKVLDLSHNH-LL---HVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp ---SSCCTTCCEEECCSSC-CC---CCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCE
T ss_pred ---cccCCCCcEEECCCCC-CC---ccCcccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCCC
Confidence 1247888988888743 22 223345678999999999987 66665 55678999999999864
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=2e-20 Score=217.17 Aligned_cols=308 Identities=20% Similarity=0.224 Sum_probs=221.9
Q ss_pred EEEEccCCCCCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCccc-CccccCCCcc
Q 002044 533 LMLVLGYKNSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEI-PKGIKKLRHL 611 (976)
Q Consensus 533 l~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~l-p~~i~~L~~L 611 (976)
+.........+|..+ .++++.|++++|.+...... .|.++++|++|+|+ ++.+..+ |..++++++|
T Consensus 16 v~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~L~------~n~i~~~~~~~~~~l~~L 82 (477)
T 2id5_A 16 VLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQD-----EFASFPHLEELELN------ENIVSAVEPGAFNNLFNL 82 (477)
T ss_dssp EECCSCCCSSCCSCC--CTTCSEEECCSSCCCEECTT-----TTTTCTTCCEEECT------TSCCCEECTTTTTTCTTC
T ss_pred EEeCCCCcCcCCCCC--CCCCcEEECCCCccceECHh-----HccCCCCCCEEECC------CCccCEeChhhhhCCccC
Confidence 333334444555443 36899999999987654322 37889999999999 5566666 6789999999
Q ss_pred ceecC--ccccccCcc-ccccCCccEEecCCCCCCcc-cchhhcccCCCcEEEecccccccCc-ccccCCCCCCcCCceE
Q 002044 612 RYLKL--YLVEKLPET-CCELLNLQTLNMCGSPGLKR-LPQGIGKLINLRHLMFEVDYLEYMP-KGIERLTSLRTLSEFV 686 (976)
Q Consensus 612 r~L~L--~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~-lp~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~~~~ 686 (976)
++|+| +.+..+|.. +.++++|++|++++|. +.. .|..+..+++|++|+++.|.+..++ ..++.+++|+.|++..
T Consensus 83 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 161 (477)
T 2id5_A 83 RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161 (477)
T ss_dssp CEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEES
T ss_pred CEEECCCCcCCccCcccccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCC
Confidence 99999 578888864 6899999999999998 554 4667899999999999888887664 4677777777775322
Q ss_pred EecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhHHHHh
Q 002044 687 VVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHEAVC 766 (976)
Q Consensus 687 ~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 766 (976)
+. +.. +. ...+..+++|+.|+++.+.... ...
T Consensus 162 n~------------l~~------------------~~------~~~l~~l~~L~~L~l~~n~i~~------------~~~ 193 (477)
T 2id5_A 162 CN------------LTS------------------IP------TEALSHLHGLIVLRLRHLNINA------------IRD 193 (477)
T ss_dssp CC------------CSS------------------CC------HHHHTTCTTCCEEEEESCCCCE------------ECT
T ss_pred Cc------------Ccc------------------cC------hhHhcccCCCcEEeCCCCcCcE------------eCh
Confidence 11 000 00 1124556789999999875431 012
Q ss_pred hcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCC--CCCCCCCcceeeccccccceEeCccccCCC
Q 002044 767 EALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMP--ALGILPSLEVLKIRFMKSVKRVGNEFLGTE 844 (976)
Q Consensus 767 ~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~--~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~ 844 (976)
..+..+++|+.|++++|.....+|.......+|+.|+|++|.. ..+| .+..+++|+.|+|++|. +..++...+
T Consensus 194 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~--- 268 (477)
T 2id5_A 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSML--- 268 (477)
T ss_dssp TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCC-CSCCHHHHTTCTTCCEEECCSSC-CCEECTTSC---
T ss_pred hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcc-cccCHHHhcCccccCeeECCCCc-CCccChhhc---
Confidence 2466788999999999877665566666667999999999954 4555 47889999999999987 555543221
Q ss_pred cCcccccccCCCCCCCCCccCccCCccceeeecccccccccccCCCccccCCCcceEeeecCCCCCCCCc-CCCCCCCCC
Q 002044 845 ISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNSLPD-QLLQSTTLE 923 (976)
Q Consensus 845 ~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~-~l~~l~~L~ 923 (976)
..+++|+.|.+.+. ......+..+..+++|+.|++++|. ++.+|. .+..+++|+
T Consensus 269 ---------------------~~l~~L~~L~L~~n---~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~ 323 (477)
T 2id5_A 269 ---------------------HELLRLQEIQLVGG---QLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLE 323 (477)
T ss_dssp ---------------------TTCTTCCEEECCSS---CCSEECTTTBTTCTTCCEEECCSSC-CSCCCGGGBSCGGGCC
T ss_pred ---------------------cccccCCEEECCCC---ccceECHHHhcCcccCCEEECCCCc-CceeCHhHcCCCcccC
Confidence 24678888888763 2223344557789999999999985 788875 467889999
Q ss_pred eEEEccCcc
Q 002044 924 ELEIIRCPI 932 (976)
Q Consensus 924 ~L~l~~c~~ 932 (976)
.|++++||-
T Consensus 324 ~L~l~~N~l 332 (477)
T 2id5_A 324 TLILDSNPL 332 (477)
T ss_dssp EEECCSSCE
T ss_pred EEEccCCCc
Confidence 999999863
No 37
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=7.5e-21 Score=219.51 Aligned_cols=362 Identities=14% Similarity=0.131 Sum_probs=237.9
Q ss_pred ccCceeEEEEEccCCCCC-cccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCccc-Cc
Q 002044 526 SQEKLRHLMLVLGYKNSF-PVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEI-PK 603 (976)
Q Consensus 526 ~~~~~r~l~~~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~l-p~ 603 (976)
.+.+++++.+..+....+ +..+..+++|++|++++|.+.... .+..|.++++|++|+|+ ++.+..+ |.
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i----~~~~~~~l~~L~~L~Ls------~n~l~~~~~~ 97 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVI----RNNTFRGLSSLIILKLD------YNQFLQLETG 97 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEE----CTTTTTTCTTCCEEECT------TCTTCEECTT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceE----CcccccccccCCEEeCC------CCccCccChh
Confidence 457899999998887765 567889999999999999764222 12338899999999999 5556555 77
Q ss_pred cccCCCccceecC--ccccc-cCcc--ccccCCccEEecCCCCCCccc-chh-hcccCCCcEEEecccccccCc-ccccC
Q 002044 604 GIKKLRHLRYLKL--YLVEK-LPET--CCELLNLQTLNMCGSPGLKRL-PQG-IGKLINLRHLMFEVDYLEYMP-KGIER 675 (976)
Q Consensus 604 ~i~~L~~Lr~L~L--~~~~~-lp~~--i~~L~~L~~L~l~~~~~l~~l-p~~-i~~l~~L~~L~l~~~~l~~lp-~~i~~ 675 (976)
.++++.+|++|++ +.+.. +|.. +.++++|++|++++|. +..+ |.. +.++++|++|++++|.+..++ ..+..
T Consensus 98 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 176 (455)
T 3v47_A 98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN 176 (455)
T ss_dssp TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGG
T ss_pred hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhc
Confidence 8999999999999 45553 3444 8899999999999998 6655 655 899999999999988887664 44554
Q ss_pred C--CCCCcCCceEEecCCCCCCCcc--cccccccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCC
Q 002044 676 L--TSLRTLSEFVVVNGSGKYGSKA--CNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAP 751 (976)
Q Consensus 676 l--~~L~~L~~~~~~~~~~~~~~~~--~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 751 (976)
+ .+|+.|++..+. .....+... .....+..+..|+ .+.+.+.. +...............+|+.|.++.+....
T Consensus 177 l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~-l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 253 (455)
T 3v47_A 177 FQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSIT-TLDLSGNG-FKESMAKRFFDAIAGTKIQSLILSNSYNMG 253 (455)
T ss_dssp GTTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEE-EEECTTSC-CCHHHHHHHHHHTTTCCEEEEECTTCTTTS
T ss_pred cccccccccccccCc-ccccchhhccccccccccccceee-eEecCCCc-ccccchhhhhccccccceeeEeeccccccc
Confidence 4 445555432222 111000000 0001111112222 33333221 111111111122234688888887664221
Q ss_pred CCCCccchh-hHHHHhhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccc
Q 002044 752 VGMKDENEA-NHEAVCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMP-ALGILPSLEVLKIRF 829 (976)
Q Consensus 752 ~~~~~~~~~-~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~L~~ 829 (976)
......... .....+.. ...++|+.|++++|.+....|.++..+++|+.|+|++|......+ .++.+++|++|+|++
T Consensus 254 ~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 332 (455)
T 3v47_A 254 SSFGHTNFKDPDNFTFKG-LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332 (455)
T ss_dssp CCTTCCSSCCCCTTTTGG-GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cccchhhhccCccccccc-ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCC
Confidence 110000000 00000001 124689999999999988878899999999999999997655544 588999999999999
Q ss_pred cccceEeCccccCCCcCcccccccCCCCCCCCCccCccCCccceeeecccccccccccCCCccccCCCcceEeeecCCCC
Q 002044 830 MKSVKRVGNEFLGTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKL 909 (976)
Q Consensus 830 ~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L 909 (976)
|. +..++...+ ..+++|+.|.+.+.. .....+..+..+++|++|++++|. +
T Consensus 333 N~-l~~~~~~~~------------------------~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~L~~N~-l 383 (455)
T 3v47_A 333 NF-LGSIDSRMF------------------------ENLDKLEVLDLSYNH---IRALGDQSFLGLPNLKELALDTNQ-L 383 (455)
T ss_dssp SC-CCEECGGGG------------------------TTCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSSC-C
T ss_pred Cc-cCCcChhHh------------------------cCcccCCEEECCCCc---ccccChhhccccccccEEECCCCc-c
Confidence 86 454433221 247788888887642 223334557789999999999986 7
Q ss_pred CCCCc-CCCCCCCCCeEEEccCc
Q 002044 910 NSLPD-QLLQSTTLEELEIIRCP 931 (976)
Q Consensus 910 ~~lp~-~l~~l~~L~~L~l~~c~ 931 (976)
+.+|. .+..+++|+.|++++|+
T Consensus 384 ~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 384 KSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCHhHhccCCcccEEEccCCC
Confidence 77875 45789999999999884
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.83 E-value=6e-20 Score=207.09 Aligned_cols=302 Identities=15% Similarity=0.146 Sum_probs=221.4
Q ss_pred ccCceeEEEEEccCCCCCccc-ccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccC-c
Q 002044 526 SQEKLRHLMLVLGYKNSFPVS-IFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIP-K 603 (976)
Q Consensus 526 ~~~~~r~l~~~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp-~ 603 (976)
...+++.+.+..+....+|.. +..+++|++|++++|.+...... .|..+++|++|+|+ ++.+..+| .
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~-----~~~~l~~L~~L~L~------~n~l~~~~~~ 111 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY-----AFAYAHTIQKLYMG------FNAIRYLPPH 111 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTT-----TTTTCTTCCEEECC------SSCCCCCCTT
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChh-----hccCCCCcCEEECC------CCCCCcCCHH
Confidence 456789999998888777654 46789999999999987553322 37899999999999 56666665 5
Q ss_pred cccCCCccceecC--ccccccCcc-ccccCCccEEecCCCCCCcccc-hhhcccCCCcEEEecccccccCcccccCCCCC
Q 002044 604 GIKKLRHLRYLKL--YLVEKLPET-CCELLNLQTLNMCGSPGLKRLP-QGIGKLINLRHLMFEVDYLEYMPKGIERLTSL 679 (976)
Q Consensus 604 ~i~~L~~Lr~L~L--~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L 679 (976)
.++++++|++|++ +.+..+|.. +.++++|++|++++|. +..++ ..+..+++|++|++++|.+..++ ++.+++|
T Consensus 112 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L 188 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSL 188 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTC
T ss_pred HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCccc--ccccccc
Confidence 6899999999999 678899976 4899999999999998 66664 56899999999999999988874 5677888
Q ss_pred CcCCceEEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccch
Q 002044 680 RTLSEFVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENE 759 (976)
Q Consensus 680 ~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 759 (976)
+.|.+..+. ...+.....| . .+.+.+. .+... ......+|+.|+++.+....
T Consensus 189 ~~L~l~~n~---------l~~~~~~~~L---~-~L~l~~n-~l~~~------~~~~~~~L~~L~l~~n~l~~-------- 240 (390)
T 3o6n_A 189 FHANVSYNL---------LSTLAIPIAV---E-ELDASHN-SINVV------RGPVNVELTILKLQHNNLTD-------- 240 (390)
T ss_dssp SEEECCSSC---------CSEEECCSSC---S-EEECCSS-CCCEE------ECCCCSSCCEEECCSSCCCC--------
T ss_pred ceeeccccc---------ccccCCCCcc---e-EEECCCC-eeeec------cccccccccEEECCCCCCcc--------
Confidence 877643221 1111111122 2 2332221 11111 11234689999999876431
Q ss_pred hhHHHHhhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceEeCcc
Q 002044 760 ANHEAVCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMPALGILPSLEVLKIRFMKSVKRVGNE 839 (976)
Q Consensus 760 ~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~ 839 (976)
...+..+++|+.|++++|.+....|..+..+++|+.|+|++|.........+.+++|++|+|++|. +..++..
T Consensus 241 ------~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 313 (390)
T 3o6n_A 241 ------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERN 313 (390)
T ss_dssp ------CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGG
T ss_pred ------cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc-ceecCcc
Confidence 134567789999999999988876888899999999999999654433346789999999999986 5544432
Q ss_pred ccCCCcCcccccccCCCCCCCCCccCccCCccceeeecccccccccccCCCccccCCCcceEeeecCC
Q 002044 840 FLGTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCS 907 (976)
Q Consensus 840 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 907 (976)
+ ..+++|+.|.+.+.. +..+. +..+++|+.|++++|+
T Consensus 314 ~-------------------------~~l~~L~~L~L~~N~-i~~~~-----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 314 Q-------------------------PQFDRLENLYLDHNS-IVTLK-----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp H-------------------------HHHTTCSEEECCSSC-CCCCC-----CCTTCCCSEEECCSSC
T ss_pred c-------------------------cccCcCCEEECCCCc-cceeC-----chhhccCCEEEcCCCC
Confidence 2 247889999988743 33332 4579999999999987
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=6.8e-20 Score=218.35 Aligned_cols=302 Identities=15% Similarity=0.143 Sum_probs=220.0
Q ss_pred ccCceeEEEEEccCCCCCccc-ccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCc-
Q 002044 526 SQEKLRHLMLVLGYKNSFPVS-IFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPK- 603 (976)
Q Consensus 526 ~~~~~r~l~~~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~- 603 (976)
....++.+.+..+....+|.. +..+++|++|++++|.+...... .|..+++|++|+|+ ++.+..+|.
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~L~------~n~l~~~~~~ 117 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY-----AFAYAHTIQKLYMG------FNAIRYLPPH 117 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTT-----TTTTCTTCCEEECC------SSCCCCCCTT
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChH-----HhcCCCCCCEEECC------CCcCCCCCHH
Confidence 345678888887777766654 46789999999999987654332 38899999999999 556666664
Q ss_pred cccCCCccceecC--ccccccCcc-ccccCCccEEecCCCCCCcccc-hhhcccCCCcEEEecccccccCcccccCCCCC
Q 002044 604 GIKKLRHLRYLKL--YLVEKLPET-CCELLNLQTLNMCGSPGLKRLP-QGIGKLINLRHLMFEVDYLEYMPKGIERLTSL 679 (976)
Q Consensus 604 ~i~~L~~Lr~L~L--~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L 679 (976)
.++++++|++|+| +.+..+|.. ++++++|++|++++|. +..+| ..++.+++|++|++++|.+..+| ++.+++|
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L 194 (597)
T 3oja_B 118 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSL 194 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTC
T ss_pred HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhh
Confidence 5799999999999 678889876 5899999999999998 66554 56899999999999999998875 5667888
Q ss_pred CcCCceEEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccch
Q 002044 680 RTLSEFVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENE 759 (976)
Q Consensus 680 ~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 759 (976)
+.|++..+. ...+.....|. .+.+.+.. +.... .....+|+.|+++++....
T Consensus 195 ~~L~l~~n~---------l~~l~~~~~L~----~L~ls~n~-l~~~~------~~~~~~L~~L~L~~n~l~~-------- 246 (597)
T 3oja_B 195 FHANVSYNL---------LSTLAIPIAVE----ELDASHNS-INVVR------GPVNVELTILKLQHNNLTD-------- 246 (597)
T ss_dssp SEEECCSSC---------CSEEECCTTCS----EEECCSSC-CCEEE------CSCCSCCCEEECCSSCCCC--------
T ss_pred hhhhcccCc---------cccccCCchhh----eeeccCCc-ccccc------cccCCCCCEEECCCCCCCC--------
Confidence 877643321 11111112222 23322211 11110 1123589999999886431
Q ss_pred hhHHHHhhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceEeCcc
Q 002044 760 ANHEAVCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMPALGILPSLEVLKIRFMKSVKRVGNE 839 (976)
Q Consensus 760 ~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~ 839 (976)
+..+..+++|+.|+|++|.+....|..+..+++|+.|+|++|......+..+.+|+|+.|+|++|. +..++..
T Consensus 247 ------~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~ 319 (597)
T 3oja_B 247 ------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERN 319 (597)
T ss_dssp ------CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGG
T ss_pred ------ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccCcc
Confidence 134567889999999999988877888999999999999999655443446779999999999987 4444432
Q ss_pred ccCCCcCcccccccCCCCCCCCCccCccCCccceeeecccccccccccCCCccccCCCcceEeeecCC
Q 002044 840 FLGTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCS 907 (976)
Q Consensus 840 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 907 (976)
+ ..+++|+.|.+.++. +..+. +..+++|+.|++++|+
T Consensus 320 ~-------------------------~~l~~L~~L~L~~N~-l~~~~-----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 320 Q-------------------------PQFDRLENLYLDHNS-IVTLK-----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp H-------------------------HHHTTCSEEECCSSC-CCCCC-----CCTTCCCSEEECCSSC
T ss_pred c-------------------------ccCCCCCEEECCCCC-CCCcC-----hhhcCCCCEEEeeCCC
Confidence 2 257889999988743 32222 4579999999999988
No 40
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=9.5e-20 Score=208.42 Aligned_cols=353 Identities=16% Similarity=0.142 Sum_probs=160.6
Q ss_pred ccCceeEEEEEccCCCCCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCC-------------CcceEEecCccc
Q 002044 526 SQEKLRHLMLVLGYKNSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLT-------------GLRVLRIEGMKS 592 (976)
Q Consensus 526 ~~~~~r~l~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~-------------~Lr~L~L~~~~~ 592 (976)
....++.+.+.++....+|..+.++++|++|++++|.+.+..+.. +.+++ .|+.|+++
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~-----~~~l~~L~~l~l~~c~~~~l~~L~l~---- 79 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPG-----NGEQREMAVSRLRDCLDRQAHELELN---- 79 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTT-----SCCCHHHHHHHHHHHHHHTCSEEECT----
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcc-----cccchhcchhhhhhhhccCCCEEEec----
Confidence 345678888888888888888999999999999988754332211 33333 35788887
Q ss_pred ccCCCCcccCccccCCCccceecC--ccccccCccccccCCccEEecCCCCCCcccchhhcccCCCcEEEecccccccCc
Q 002044 593 LIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLPETCCELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLEYMP 670 (976)
Q Consensus 593 l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lp 670 (976)
++.+..+|.. ..+|++|++ +.+..+|.. +.+|++|++++|. +..+|.. .++|++|++++|.+..+|
T Consensus 80 --~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n~l~~lp 147 (454)
T 1jl5_A 80 --NLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNNQLEKLP 147 (454)
T ss_dssp --TSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSSCCSSCC
T ss_pred --CCccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccCC---CCCCCEEECcCCCCCCCc
Confidence 4455556652 357778877 556667653 3667777777765 5555532 256777777777777766
Q ss_pred ccccCCCCCCcCCceEEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCC
Q 002044 671 KGIERLTSLRTLSEFVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEA 750 (976)
Q Consensus 671 ~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 750 (976)
.++.+++|++|++..+. ..+ .+.. ...|+ .+.+.+. .+... ..+..+++|+.|+++++...
T Consensus 148 -~~~~l~~L~~L~l~~N~-l~~-lp~~---~~~L~-------~L~L~~n-~l~~l-----~~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDNNS-LKK-LPDL---PPSLE-------FIAAGNN-QLEEL-----PELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp -CCTTCTTCCEEECCSSC-CSC-CCCC---CTTCC-------EEECCSS-CCSSC-----CCCTTCTTCCEEECCSSCCS
T ss_pred -ccCCCCCCCEEECCCCc-Ccc-cCCC---ccccc-------EEECcCC-cCCcC-----ccccCCCCCCEEECCCCcCC
Confidence 46777777766544332 111 1111 11222 2222111 11111 12455566666666655422
Q ss_pred CCCCCccchhhHHHHhhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCCCCC-------------
Q 002044 751 PVGMKDENEANHEAVCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMPALG------------- 817 (976)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~------------- 817 (976)
.. + ..+++|+.|++++|....+ |. +..+++|+.|++++|... .+|...
T Consensus 209 ~l-------------~---~~~~~L~~L~l~~n~l~~l-p~-~~~l~~L~~L~l~~N~l~-~l~~~~~~L~~L~l~~N~l 269 (454)
T 1jl5_A 209 KL-------------P---DLPLSLESIVAGNNILEEL-PE-LQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYL 269 (454)
T ss_dssp SC-------------C---CCCTTCCEEECCSSCCSSC-CC-CTTCTTCCEEECCSSCCS-SCCSCCTTCCEEECCSSCC
T ss_pred cC-------------C---CCcCcccEEECcCCcCCcc-cc-cCCCCCCCEEECCCCcCC-cccccccccCEEECCCCcc
Confidence 10 0 0123555555555554433 42 445555555555554322 222210
Q ss_pred -----CCCCcceeeccccccceEeCccccCCCcCcccccccCCCCCCCCCccCccC-CccceeeecccccccccccCCCc
Q 002044 818 -----ILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIHIQDGSMSSSSSSSANIAF-PKLKELKFFCLDEWEEWDFGKED 891 (976)
Q Consensus 818 -----~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~f-p~L~~L~l~~l~~l~~~~~~~~~ 891 (976)
.+++|++|++++|. ++.++.. ...+..+++++|.+.... .+ ++|+.|.+.+. .+.. .+.
T Consensus 270 ~~l~~~~~~L~~L~ls~N~-l~~l~~~---~~~L~~L~l~~N~l~~i~------~~~~~L~~L~Ls~N-~l~~---lp~- 334 (454)
T 1jl5_A 270 TDLPELPQSLTFLDVSENI-FSGLSEL---PPNLYYLNASSNEIRSLC------DLPPSLEELNVSNN-KLIE---LPA- 334 (454)
T ss_dssp SCCCCCCTTCCEEECCSSC-CSEESCC---CTTCCEEECCSSCCSEEC------CCCTTCCEEECCSS-CCSC---CCC-
T ss_pred cccCcccCcCCEEECcCCc-cCcccCc---CCcCCEEECcCCcCCccc------CCcCcCCEEECCCC-cccc---ccc-
Confidence 12444444444443 2222211 122334444444433211 12 46777776652 2222 222
Q ss_pred cccCCCcceEeeecCCCCCCCCcCCCCCCCCCeEEEccCcchHHhhcc--CCCCCcccc-------------cCCCceee
Q 002044 892 ITIMPQLSSMKISYCSKLNSLPDQLLQSTTLEELEIIRCPILEERFKK--DTGEDWSKI-------------THIPKIKI 956 (976)
Q Consensus 892 ~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~~~~i-------------~~l~~l~~ 956 (976)
.+++|+.|++++|. ++.+|. .+++|+.|++++| .+.. ..+..+..+ +++..+++
T Consensus 335 --~~~~L~~L~L~~N~-l~~lp~---~l~~L~~L~L~~N-----~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~l 403 (454)
T 1jl5_A 335 --LPPRLERLIASFNH-LAEVPE---LPQNLKQLHVEYN-----PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHV 403 (454)
T ss_dssp --CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-----CCSSCCCCCTTCCEEECCC-----------------
T ss_pred --cCCcCCEEECCCCc-cccccc---hhhhccEEECCCC-----CCCcCCCChHHHHhhhhcccccccccccCcCCEEEC
Confidence 36889999999885 778887 3678999999988 3333 233344444 67888899
Q ss_pred ccccccc
Q 002044 957 HGEYVQG 963 (976)
Q Consensus 957 ~~n~~~~ 963 (976)
++|.+++
T Consensus 404 s~N~l~~ 410 (454)
T 1jl5_A 404 ETNPLRE 410 (454)
T ss_dssp -------
T ss_pred CCCcCCc
Confidence 9999887
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=6.2e-19 Score=212.88 Aligned_cols=144 Identities=20% Similarity=0.264 Sum_probs=115.4
Q ss_pred ccCceeEEEEEccCCCCCc-ccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCc-
Q 002044 526 SQEKLRHLMLVLGYKNSFP-VSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPK- 603 (976)
Q Consensus 526 ~~~~~r~l~~~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~- 603 (976)
.+..++++.+..+.+..++ ..+..+++|++|++++|.+.... ++.|.++++|++|+|+ ++.+..+|.
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~-----~~~f~~L~~L~~L~Ls------~N~l~~l~~~ 118 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-----DGAYQSLSHLSTLILT------GNPIQSLALG 118 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-----TTTTTTCTTCCEEECT------TCCCCEECGG
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcC-----hhHhcCCCCCCEEEcc------CCcCCCCCHH
Confidence 5678899999988887765 46788999999999999875433 2338899999999999 667778875
Q ss_pred cccCCCccceecC--ccccccCc-cccccCCccEEecCCCCCCc--ccchhhcccCCCcEEEecccccccCc-ccccCCC
Q 002044 604 GIKKLRHLRYLKL--YLVEKLPE-TCCELLNLQTLNMCGSPGLK--RLPQGIGKLINLRHLMFEVDYLEYMP-KGIERLT 677 (976)
Q Consensus 604 ~i~~L~~Lr~L~L--~~~~~lp~-~i~~L~~L~~L~l~~~~~l~--~lp~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~ 677 (976)
.+.+|.+|++|+| +.+..+|+ .+++|++|++|++++|. +. .+|..++.+++|++|+++.|.+..++ ..+..+.
T Consensus 119 ~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 197 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 197 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccccccccccchh
Confidence 5799999999999 67888875 58999999999999997 54 35788899999999999888887765 3455555
Q ss_pred CCCc
Q 002044 678 SLRT 681 (976)
Q Consensus 678 ~L~~ 681 (976)
+++.
T Consensus 198 ~l~~ 201 (635)
T 4g8a_A 198 QMPL 201 (635)
T ss_dssp TCTT
T ss_pred hhhh
Confidence 4443
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=4.5e-19 Score=194.03 Aligned_cols=231 Identities=24% Similarity=0.294 Sum_probs=149.8
Q ss_pred hcCCCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccccCccccccCCccEEecCCCCCCcccchhhcccC
Q 002044 577 DQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLPETCCELLNLQTLNMCGSPGLKRLPQGIGKLI 654 (976)
Q Consensus 577 ~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~ 654 (976)
.....++.|+|+ ++.+..+|..++++.+|++|+| +.+..+|..++++++|++|++++|. +..+|..+++++
T Consensus 78 ~~~~~l~~L~L~------~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~ 150 (328)
T 4fcg_A 78 ATQPGRVALELR------SVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLN 150 (328)
T ss_dssp HTSTTCCEEEEE------SSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCT
T ss_pred ccccceeEEEcc------CCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCc
Confidence 346889999999 6777788988888999999999 6677888888899999999998887 778888888899
Q ss_pred CCcEEEecc-cccccCcccccCCCCCCcCCceEEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccC
Q 002044 655 NLRHLMFEV-DYLEYMPKGIERLTSLRTLSEFVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHL 733 (976)
Q Consensus 655 ~L~~L~l~~-~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l 733 (976)
+|++|++++ +.+..+|..++... .. ..+
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~~------------~~---------------------------------------~~~ 179 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLASTD------------AS---------------------------------------GEH 179 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEEC-------------C---------------------------------------CCE
T ss_pred CCCEEECCCCCCccccChhHhhcc------------ch---------------------------------------hhh
Confidence 999998855 44445554332100 00 001
Q ss_pred CCCCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCC
Q 002044 734 DKKKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVM 813 (976)
Q Consensus 734 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l 813 (976)
..+ ++|+.|++++|.+..+ |.++..+++|+.|+|++|......
T Consensus 180 ~~l------------------------------------~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~N~l~~l~ 222 (328)
T 4fcg_A 180 QGL------------------------------------VNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSALG 222 (328)
T ss_dssp EES------------------------------------TTCCEEEEEEECCCCC-CGGGGGCTTCCEEEEESSCCCCCC
T ss_pred ccC------------------------------------CCCCEEECcCCCcCcc-hHhhcCCCCCCEEEccCCCCCcCc
Confidence 122 3444444444444433 555555555555555555433333
Q ss_pred CCCCCCCCcceeeccccccceEeCccccCCCcCcccccccCCCCCCCCCccCccCCccceeeecccccccccccCCCccc
Q 002044 814 PALGILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDIT 893 (976)
Q Consensus 814 ~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~ 893 (976)
+.++.+++|++|+|++|.....++..+ ..+++|+.|.+.++..... .+..+.
T Consensus 223 ~~l~~l~~L~~L~Ls~n~~~~~~p~~~-------------------------~~l~~L~~L~L~~n~~~~~---~p~~~~ 274 (328)
T 4fcg_A 223 PAIHHLPKLEELDLRGCTALRNYPPIF-------------------------GGRAPLKRLILKDCSNLLT---LPLDIH 274 (328)
T ss_dssp GGGGGCTTCCEEECTTCTTCCBCCCCT-------------------------TCCCCCCEEECTTCTTCCB---CCTTGG
T ss_pred hhhccCCCCCEEECcCCcchhhhHHHh-------------------------cCCCCCCEEECCCCCchhh---cchhhh
Confidence 335555555555555554333332211 1344555555544332222 223356
Q ss_pred cCCCcceEeeecCCCCCCCCcCCCCCCCCCeEEEccC
Q 002044 894 IMPQLSSMKISYCSKLNSLPDQLLQSTTLEELEIIRC 930 (976)
Q Consensus 894 ~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c 930 (976)
.+++|+.|+|++|+.++.+|..+.++++|+.+.+..+
T Consensus 275 ~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 275 RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred cCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 7899999999999999999999999999999988754
No 43
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=202.46 Aligned_cols=299 Identities=16% Similarity=0.128 Sum_probs=202.4
Q ss_pred CCcceEEecCcccccCCCCccc-CccccCCCccceecC--cccccc-CccccccCCccEEecCCCCCCcccchh-hcccC
Q 002044 580 TGLRVLRIEGMKSLIGSGTNEI-PKGIKKLRHLRYLKL--YLVEKL-PETCCELLNLQTLNMCGSPGLKRLPQG-IGKLI 654 (976)
Q Consensus 580 ~~Lr~L~L~~~~~l~~~~~~~l-p~~i~~L~~Lr~L~L--~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~l~ 654 (976)
++|++|+|+ ++.+..+ |..+.++++|++|+| +.+..+ |..+.++++|++|+|++|. +..+|.. +.+++
T Consensus 32 ~~l~~L~L~------~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 104 (477)
T 2id5_A 32 TETRLLDLG------KNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLS 104 (477)
T ss_dssp TTCSEEECC------SSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCT
T ss_pred CCCcEEECC------CCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCC
Confidence 578888888 5556666 356788888888888 456655 5677888888888888876 7777754 57788
Q ss_pred CCcEEEecccccccCc-ccccCCCCCCcCCceEEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccC
Q 002044 655 NLRHLMFEVDYLEYMP-KGIERLTSLRTLSEFVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHL 733 (976)
Q Consensus 655 ~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l 733 (976)
+|++|+++.|.+..++ ..+..+++|+.|++..+. +. .+ ....+
T Consensus 105 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~---------------------l~-~~--------------~~~~~ 148 (477)
T 2id5_A 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND---------------------LV-YI--------------SHRAF 148 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT---------------------CC-EE--------------CTTSS
T ss_pred CCCEEECCCCccccCChhHccccccCCEEECCCCc---------------------cc-ee--------------Chhhc
Confidence 8888888777776653 456667777666432110 00 00 00124
Q ss_pred CCCCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCC
Q 002044 734 DKKKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVM 813 (976)
Q Consensus 734 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l 813 (976)
..+.+|+.|+++.+..... ....+..+++|+.|++++|.+....+..+..+++|+.|+|++|.....+
T Consensus 149 ~~l~~L~~L~l~~n~l~~~------------~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 216 (477)
T 2id5_A 149 SGLNSLEQLTLEKCNLTSI------------PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216 (477)
T ss_dssp TTCTTCCEEEEESCCCSSC------------CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEE
T ss_pred cCCCCCCEEECCCCcCccc------------ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccccc
Confidence 5566788888887653311 0122455678888888888777665556677788888888887766655
Q ss_pred CC-CCCCCCcceeeccccccceEeCccccCCCcCcccccccCCCCCCCCCccCccCCccceeeecccccccccccCCCcc
Q 002044 814 PA-LGILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDI 892 (976)
Q Consensus 814 ~~-l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~ 892 (976)
+. ....++|++|+|++|. ++.++... ...+++|+.|.+.+.. +. ...+..+
T Consensus 217 ~~~~~~~~~L~~L~l~~n~-l~~~~~~~------------------------~~~l~~L~~L~Ls~n~-l~--~~~~~~~ 268 (477)
T 2id5_A 217 TPNCLYGLNLTSLSITHCN-LTAVPYLA------------------------VRHLVYLRFLNLSYNP-IS--TIEGSML 268 (477)
T ss_dssp CTTTTTTCCCSEEEEESSC-CCSCCHHH------------------------HTTCTTCCEEECCSSC-CC--EECTTSC
T ss_pred CcccccCccccEEECcCCc-ccccCHHH------------------------hcCccccCeeECCCCc-CC--ccChhhc
Confidence 43 4445578888887775 44333211 1247788888887643 22 2333446
Q ss_pred ccCCCcceEeeecCCCCCCCCcCCCCCCCCCeEEEccCcchHHhhccCCCCCcccccCCCceeecccccccCcc
Q 002044 893 TIMPQLSSMKISYCSKLNSLPDQLLQSTTLEELEIIRCPILEERFKKDTGEDWSKITHIPKIKIHGEYVQGSPP 966 (976)
Q Consensus 893 ~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~n~~~~~~~ 966 (976)
..+++|+.|++++|..-...|..+.++++|+.|++++| .+.......+..++.+..+++++|.+....+
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-----~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-----QLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-----CCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred cccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-----cCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 78999999999998743344678889999999999999 5555555556778999999999999986544
No 44
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.78 E-value=1.1e-18 Score=199.66 Aligned_cols=334 Identities=15% Similarity=0.109 Sum_probs=203.8
Q ss_pred ccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCcc-------------ceec
Q 002044 549 YARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHL-------------RYLK 615 (976)
Q Consensus 549 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~L-------------r~L~ 615 (976)
+..+|++|.+++|.+ + . +|..+.++++|++|++++|.. ...+|.+++++.+| ++|+
T Consensus 9 ~~~~L~~L~l~~n~l-~----~-iP~~i~~L~~L~~L~l~~n~~-----~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~ 77 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-T----E-MPVEAENVKSKTEYYNAWSEW-----ERNAPPGNGEQREMAVSRLRDCLDRQAHELE 77 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHH-----HHTSCTTSCCCHHHHHHHHHHHHHHTCSEEE
T ss_pred ccccchhhhcccCch-h----h-CChhHhcccchhhhhccCCcc-----cccCCcccccchhcchhhhhhhhccCCCEEE
Confidence 457899999999875 2 2 344489999999999995421 23678888888876 8888
Q ss_pred C--ccccccCccccccCCccEEecCCCCCCcccchhhcccCCCcEEEecccccccCcccccCCCCCCcCCceEEecCCCC
Q 002044 616 L--YLVEKLPETCCELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLEYMPKGIERLTSLRTLSEFVVVNGSGK 693 (976)
Q Consensus 616 L--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~ 693 (976)
+ +.+..+|.. .++|++|++++|. +..+|.. +++|++|++++|.+..+|... ++|++|++..+. ..+
T Consensus 78 l~~~~l~~lp~~---~~~L~~L~l~~n~-l~~lp~~---~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~-l~~- 145 (454)
T 1jl5_A 78 LNNLGLSSLPEL---PPHLESLVASCNS-LTELPEL---PQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQ-LEK- 145 (454)
T ss_dssp CTTSCCSCCCSC---CTTCSEEECCSSC-CSSCCCC---CTTCCEEECCSSCCSCCCSCC---TTCCEEECCSSC-CSS-
T ss_pred ecCCccccCCCC---cCCCCEEEccCCc-CCccccc---cCCCcEEECCCCccCcccCCC---CCCCEEECcCCC-CCC-
Confidence 8 566677762 3689999999887 7778864 478999999888888776422 577777654432 222
Q ss_pred CCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCC
Q 002044 694 YGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPP 773 (976)
Q Consensus 694 ~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 773 (976)
.| .+..+..|+ .+.+.+. .++.+. ....+|+.|+++++.... + ..+..++
T Consensus 146 lp-------~~~~l~~L~-~L~l~~N-~l~~lp-------~~~~~L~~L~L~~n~l~~-------------l-~~~~~l~ 195 (454)
T 1jl5_A 146 LP-------ELQNSSFLK-IIDVDNN-SLKKLP-------DLPPSLEFIAAGNNQLEE-------------L-PELQNLP 195 (454)
T ss_dssp CC-------CCTTCTTCC-EEECCSS-CCSCCC-------CCCTTCCEEECCSSCCSS-------------C-CCCTTCT
T ss_pred Cc-------ccCCCCCCC-EEECCCC-cCcccC-------CCcccccEEECcCCcCCc-------------C-ccccCCC
Confidence 22 223333332 3333321 111111 112489999998775431 1 2467789
Q ss_pred CCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceEeCccccCCCcCccccccc
Q 002044 774 NLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMPALGILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIHIQD 853 (976)
Q Consensus 774 ~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~l~~ 853 (976)
+|+.|++++|.+..+ |... ++|+.|++++|.. ..+|.++.+++|++|++++|. ++.++.. ...+..+++++
T Consensus 196 ~L~~L~l~~N~l~~l-~~~~---~~L~~L~l~~n~l-~~lp~~~~l~~L~~L~l~~N~-l~~l~~~---~~~L~~L~l~~ 266 (454)
T 1jl5_A 196 FLTAIYADNNSLKKL-PDLP---LSLESIVAGNNIL-EELPELQNLPFLTTIYADNNL-LKTLPDL---PPSLEALNVRD 266 (454)
T ss_dssp TCCEEECCSSCCSSC-CCCC---TTCCEEECCSSCC-SSCCCCTTCTTCCEEECCSSC-CSSCCSC---CTTCCEEECCS
T ss_pred CCCEEECCCCcCCcC-CCCc---CcccEEECcCCcC-CcccccCCCCCCCEEECCCCc-CCccccc---ccccCEEECCC
Confidence 999999999988775 6543 6999999999954 478889999999999999986 5555542 24566777777
Q ss_pred CCCCCCCCCccCccCCccceeeecccccccccccCC----------C---ccccC-CCcceEeeecCCCCCCCCcCCCCC
Q 002044 854 GSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGK----------E---DITIM-PQLSSMKISYCSKLNSLPDQLLQS 919 (976)
Q Consensus 854 ~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~----------~---~~~~l-~~L~~L~l~~c~~L~~lp~~l~~l 919 (976)
|.+..... .+++|+.|.+.+.. +..+...+ . .+..+ ++|+.|++++|. +..+|.. +
T Consensus 267 N~l~~l~~-----~~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~-l~~lp~~---~ 336 (454)
T 1jl5_A 267 NYLTDLPE-----LPQSLTFLDVSENI-FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELPAL---P 336 (454)
T ss_dssp SCCSCCCC-----CCTTCCEEECCSSC-CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSC-CSCCCCC---C
T ss_pred CcccccCc-----ccCcCCEEECcCCc-cCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCc-ccccccc---C
Confidence 76654221 24566666665431 11111000 0 01123 488999999875 7778765 5
Q ss_pred CCCCeEEEccCcchHHhhccCCCCCcccccCCCceeeccccccc
Q 002044 920 TTLEELEIIRCPILEERFKKDTGEDWSKITHIPKIKIHGEYVQG 963 (976)
Q Consensus 920 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~n~~~~ 963 (976)
++|+.|++++| .+..... ..+.+..+++++|.+.+
T Consensus 337 ~~L~~L~L~~N-----~l~~lp~----~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 337 PRLERLIASFN-----HLAEVPE----LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp TTCCEEECCSS-----CCSCCCC----CCTTCCEEECCSSCCSS
T ss_pred CcCCEEECCCC-----ccccccc----hhhhccEEECCCCCCCc
Confidence 78999999998 4443222 36889999999999998
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=1.2e-18 Score=191.65 Aligned_cols=238 Identities=22% Similarity=0.231 Sum_probs=130.5
Q ss_pred eeEEEEEccCCCCCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCccc-CccccCC
Q 002044 530 LRHLMLVLGYKNSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEI-PKGIKKL 608 (976)
Q Consensus 530 ~r~l~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~l-p~~i~~L 608 (976)
++.+.+..+....+|..+ .++|++|++++|.+..... ..|.++++|++|+++ ++.+..+ |..++++
T Consensus 35 l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~-----~~~~~l~~L~~L~L~------~n~l~~~~~~~~~~l 101 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRK-----DDFKGLQHLYALVLV------NNKISKIHEKAFSPL 101 (332)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECT-----TTTTTCTTCCEEECC------SSCCCEECGGGSTTC
T ss_pred CCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccCH-----hHhhCCCCCcEEECC------CCccCccCHhHhhCc
Confidence 444555444444444433 3566777777666543221 125666777777776 4444444 4566667
Q ss_pred CccceecC--ccccccCccccccCCccEEecCCCCCCcccchh-hcccCCCcEEEeccccccc---CcccccCCCCCCcC
Q 002044 609 RHLRYLKL--YLVEKLPETCCELLNLQTLNMCGSPGLKRLPQG-IGKLINLRHLMFEVDYLEY---MPKGIERLTSLRTL 682 (976)
Q Consensus 609 ~~Lr~L~L--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~~~~l~~---lp~~i~~l~~L~~L 682 (976)
++|++|++ +.+..+|..+. .+|++|++++|. +..+|.. +..+++|++|++++|.+.. .|..++.+ +|+.|
T Consensus 102 ~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L 177 (332)
T 2ft3_A 102 RKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL 177 (332)
T ss_dssp TTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCC
T ss_pred CCCCEEECCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEE
Confidence 77777777 45666666554 567777777665 5555543 5667777777776665542 23334444 45554
Q ss_pred CceEEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhH
Q 002044 683 SEFVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANH 762 (976)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 762 (976)
++..+. .. . ++ ..+ .++|+.|+++++.....
T Consensus 178 ~l~~n~-l~-----------~---------------l~----------~~~--~~~L~~L~l~~n~i~~~---------- 208 (332)
T 2ft3_A 178 RISEAK-LT-----------G---------------IP----------KDL--PETLNELHLDHNKIQAI---------- 208 (332)
T ss_dssp BCCSSB-CS-----------S---------------CC----------SSS--CSSCSCCBCCSSCCCCC----------
T ss_pred ECcCCC-CC-----------c---------------cC----------ccc--cCCCCEEECCCCcCCcc----------
Confidence 322111 00 0 00 000 13455555555432210
Q ss_pred HHHhhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccccccceEeC
Q 002044 763 EAVCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMP-ALGILPSLEVLKIRFMKSVKRVG 837 (976)
Q Consensus 763 ~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~L~~~~~l~~~~ 837 (976)
.+..+..+++|+.|++++|.+....+.++..+++|+.|+|++|... .+| .++.+++|++|++++|. ++.++
T Consensus 209 --~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~-l~~~~ 280 (332)
T 2ft3_A 209 --ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN-ITKVG 280 (332)
T ss_dssp --CTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSC-CCBCC
T ss_pred --CHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCC-CCccC
Confidence 1123455667777777777766664556667777777777777543 443 36667777777777665 44443
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=3.7e-18 Score=187.64 Aligned_cols=221 Identities=18% Similarity=0.160 Sum_probs=114.2
Q ss_pred CceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCccc-CccccCCCccceecC--ccccccCcccc
Q 002044 551 RKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEI-PKGIKKLRHLRYLKL--YLVEKLPETCC 627 (976)
Q Consensus 551 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~l-p~~i~~L~~Lr~L~L--~~~~~lp~~i~ 627 (976)
+++++|++++|.+...... .|.++++|++|+|+ ++.+..+ |..++++++|++|++ +.+..+|..+.
T Consensus 52 ~~l~~L~L~~n~i~~~~~~-----~~~~l~~L~~L~L~------~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~ 120 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDG-----DFKNLKNLHTLILI------NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP 120 (330)
T ss_dssp TTCCEEECCSSCCCCBCTT-----TTTTCTTCCEEECC------SSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC
T ss_pred CCCeEEECCCCcCCEeChh-----hhccCCCCCEEECC------CCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc
Confidence 4566666666654432221 25566666666666 3444444 455666666666666 44555665443
Q ss_pred ccCCccEEecCCCCCCcccch-hhcccCCCcEEEeccccccc---CcccccCCCCCCcCCceEEecCCCCCCCccccccc
Q 002044 628 ELLNLQTLNMCGSPGLKRLPQ-GIGKLINLRHLMFEVDYLEY---MPKGIERLTSLRTLSEFVVVNGSGKYGSKACNLEG 703 (976)
Q Consensus 628 ~L~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~l~~~~l~~---lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~ 703 (976)
++|++|++++|. +..+|. .+.++++|++|+++.|.+.. .|..++.+++|+.|.+..+. +..
T Consensus 121 --~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~------------l~~ 185 (330)
T 1xku_A 121 --KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN------------ITT 185 (330)
T ss_dssp --TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC------------CCS
T ss_pred --ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc------------ccc
Confidence 566666666665 444443 35666666666665555432 23344455555544321110 000
Q ss_pred ccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEeec
Q 002044 704 LRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITGF 783 (976)
Q Consensus 704 L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 783 (976)
++. .+ ..+|+.|+++++.... ..+..+..+++|+.|++++|
T Consensus 186 ---------------l~~----------~~--~~~L~~L~l~~n~l~~------------~~~~~~~~l~~L~~L~Ls~n 226 (330)
T 1xku_A 186 ---------------IPQ----------GL--PPSLTELHLDGNKITK------------VDAASLKGLNNLAKLGLSFN 226 (330)
T ss_dssp ---------------CCS----------SC--CTTCSEEECTTSCCCE------------ECTGGGTTCTTCCEEECCSS
T ss_pred ---------------CCc----------cc--cccCCEEECCCCcCCc------------cCHHHhcCCCCCCEEECCCC
Confidence 000 00 1355556555543220 01223445566777777766
Q ss_pred CCCCCCcccccccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceEeC
Q 002044 784 KGRTLMLSWIVSLNKLKKLRLLFCDKCEVMPALGILPSLEVLKIRFMKSVKRVG 837 (976)
Q Consensus 784 ~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~ 837 (976)
.+....+.++..+++|+.|+|++|........+..+++|++|++++|. ++.++
T Consensus 227 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~ 279 (330)
T 1xku_A 227 SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIG 279 (330)
T ss_dssp CCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCC
T ss_pred cCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc-CCccC
Confidence 666554445666667777777766443222346666677777776665 44333
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.76 E-value=2.1e-18 Score=188.68 Aligned_cols=124 Identities=26% Similarity=0.375 Sum_probs=105.3
Q ss_pred ccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccccCccc
Q 002044 549 YARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLPETC 626 (976)
Q Consensus 549 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp~~i 626 (976)
...+++.|+++++.+... +..+.++++|++|+|+ ++.+..+|..++++.+|++|+| +.+..+|..+
T Consensus 79 ~~~~l~~L~L~~n~l~~l------p~~l~~l~~L~~L~L~------~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l 146 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQF------PDQAFRLSHLQHMTID------AAGLMELPDTMQQFAGLETLTLARNPLRALPASI 146 (328)
T ss_dssp TSTTCCEEEEESSCCSSC------CSCGGGGTTCSEEEEE------SSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGG
T ss_pred cccceeEEEccCCCchhc------ChhhhhCCCCCEEECC------CCCccchhHHHhccCCCCEEECCCCccccCcHHH
Confidence 357899999999987532 2226679999999999 6677789999999999999999 6788999999
Q ss_pred cccCCccEEecCCCCCCcccchhhcc---------cCCCcEEEecccccccCcccccCCCCCCcCCc
Q 002044 627 CELLNLQTLNMCGSPGLKRLPQGIGK---------LINLRHLMFEVDYLEYMPKGIERLTSLRTLSE 684 (976)
Q Consensus 627 ~~L~~L~~L~l~~~~~l~~lp~~i~~---------l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~ 684 (976)
+++++|++|++++|..+..+|..++. +++|++|++++|.+..+|..++.+++|+.|++
T Consensus 147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L 213 (328)
T 4fcg_A 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKI 213 (328)
T ss_dssp GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEE
T ss_pred hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEc
Confidence 99999999999999888999988765 89999999988888888887877777777653
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=9.8e-19 Score=190.24 Aligned_cols=244 Identities=20% Similarity=0.220 Sum_probs=158.2
Q ss_pred CceeEEEEEccCCC---CCcccccccCceeEEEecC-cccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCc-ccC
Q 002044 528 EKLRHLMLVLGYKN---SFPVSIFYARKLRSLMLSY-NTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTN-EIP 602 (976)
Q Consensus 528 ~~~r~l~~~~~~~~---~~~~~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~-~lp 602 (976)
.+++++.+..+... .+|..+..+++|++|++++ |.+.+..+. .+.++++|++|+|+ ++.+. .+|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~-----~l~~l~~L~~L~Ls------~n~l~~~~p 118 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-----AIAKLTQLHYLYIT------HTNVSGAIP 118 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-----GGGGCTTCSEEEEE------EECCEEECC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh-----hHhcCCCCCEEECc------CCeeCCcCC
Confidence 45666666666554 2455666666677776663 544332222 25666666666666 34443 456
Q ss_pred ccccCCCccceecC--cccc-ccCccccccCCccEEecCCCCCCc-ccchhhcccC-CCcEEEecccccc-cCcccccCC
Q 002044 603 KGIKKLRHLRYLKL--YLVE-KLPETCCELLNLQTLNMCGSPGLK-RLPQGIGKLI-NLRHLMFEVDYLE-YMPKGIERL 676 (976)
Q Consensus 603 ~~i~~L~~Lr~L~L--~~~~-~lp~~i~~L~~L~~L~l~~~~~l~-~lp~~i~~l~-~L~~L~l~~~~l~-~lp~~i~~l 676 (976)
..++++++|++|++ +.+. .+|..+.++++|++|++++|. +. .+|..++.++ +|++|+++.|.+. .+|..++.+
T Consensus 119 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l 197 (313)
T 1ogq_A 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC
Confidence 66666666666666 3344 466666666666666666665 43 5666666666 6666666666655 455555555
Q ss_pred CCCCcCCceEEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCc
Q 002044 677 TSLRTLSEFVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKD 756 (976)
Q Consensus 677 ~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 756 (976)
+ |+.|++..+. +. ......+..+++|+.|+++.+...
T Consensus 198 ~-L~~L~Ls~N~-------------------------l~-----------~~~~~~~~~l~~L~~L~L~~N~l~------ 234 (313)
T 1ogq_A 198 N-LAFVDLSRNM-------------------------LE-----------GDASVLFGSDKNTQKIHLAKNSLA------ 234 (313)
T ss_dssp C-CSEEECCSSE-------------------------EE-----------ECCGGGCCTTSCCSEEECCSSEEC------
T ss_pred c-ccEEECcCCc-------------------------cc-----------CcCCHHHhcCCCCCEEECCCCcee------
Confidence 4 5544321111 00 001134566778889988877532
Q ss_pred cchhhHHHHhhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccc
Q 002044 757 ENEANHEAVCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMPALGILPSLEVLKIRFMKSV 833 (976)
Q Consensus 757 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l 833 (976)
..+..+..+++|+.|++++|.+....|.++..+++|+.|+|++|...+.+|..+.+++|+.|++++|+.+
T Consensus 235 -------~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 235 -------FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp -------CBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred -------eecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence 1122356678999999999998855599999999999999999987778888899999999999998754
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.74 E-value=3.1e-17 Score=180.28 Aligned_cols=288 Identities=16% Similarity=0.195 Sum_probs=174.0
Q ss_pred CCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccccCc-cccccCCccEEecCCCCCCccc-chhhcccCC
Q 002044 580 TGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLPE-TCCELLNLQTLNMCGSPGLKRL-PQGIGKLIN 655 (976)
Q Consensus 580 ~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~l-p~~i~~l~~ 655 (976)
.+|++++++ +..+..+|..+. .+|++|++ +.+..+|. .+.++++|++|++++|. +..+ |..++.+++
T Consensus 31 c~l~~l~~~------~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~ 101 (330)
T 1xku_A 31 CHLRVVQCS------DLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVK 101 (330)
T ss_dssp EETTEEECT------TSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTT
T ss_pred CCCeEEEec------CCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCC
Confidence 367777777 556667776554 57888888 56677765 67888888888888887 5555 777888888
Q ss_pred CcEEEecccccccCcccccCCCCCCcCCceEEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCC
Q 002044 656 LRHLMFEVDYLEYMPKGIERLTSLRTLSEFVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDK 735 (976)
Q Consensus 656 L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~ 735 (976)
|++|++++|.+..+|..+. ++|+.|.+..+. +.. . ....+..
T Consensus 102 L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~------------l~~---------------------~---~~~~~~~ 143 (330)
T 1xku_A 102 LERLYLSKNQLKELPEKMP--KTLQELRVHENE------------ITK---------------------V---RKSVFNG 143 (330)
T ss_dssp CCEEECCSSCCSBCCSSCC--TTCCEEECCSSC------------CCB---------------------B---CHHHHTT
T ss_pred CCEEECCCCcCCccChhhc--ccccEEECCCCc------------ccc---------------------c---CHhHhcC
Confidence 8888888888877776554 455555421110 000 0 0012344
Q ss_pred CCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCC-
Q 002044 736 KKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMP- 814 (976)
Q Consensus 736 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~- 814 (976)
+.+|+.|+++.+..... ......+..+++|+.|++++|.+..+ |..+. ++|+.|++++|......+
T Consensus 144 l~~L~~L~l~~n~l~~~----------~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~--~~L~~L~l~~n~l~~~~~~ 210 (330)
T 1xku_A 144 LNQMIVVELGTNPLKSS----------GIENGAFQGMKKLSYIRIADTNITTI-PQGLP--PSLTELHLDGNKITKVDAA 210 (330)
T ss_dssp CTTCCEEECCSSCCCGG----------GBCTTGGGGCTTCCEEECCSSCCCSC-CSSCC--TTCSEEECTTSCCCEECTG
T ss_pred CccccEEECCCCcCCcc----------CcChhhccCCCCcCEEECCCCccccC-Ccccc--ccCCEEECCCCcCCccCHH
Confidence 55677777766543200 01122345567888888888877765 65443 788888888876443322
Q ss_pred CCCCCCCcceeeccccccceEeCccccCCCcCcccccccCCCCCCCCCccCccCCccceeeecccccccccccCCCcccc
Q 002044 815 ALGILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITI 894 (976)
Q Consensus 815 ~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~ 894 (976)
.++.+++|++|+|++|. ++.++... ...+++|+.|.+.+.. +. ..+..+..
T Consensus 211 ~~~~l~~L~~L~Ls~n~-l~~~~~~~------------------------~~~l~~L~~L~L~~N~-l~---~lp~~l~~ 261 (330)
T 1xku_A 211 SLKGLNNLAKLGLSFNS-ISAVDNGS------------------------LANTPHLRELHLNNNK-LV---KVPGGLAD 261 (330)
T ss_dssp GGTTCTTCCEEECCSSC-CCEECTTT------------------------GGGSTTCCEEECCSSC-CS---SCCTTTTT
T ss_pred HhcCCCCCCEEECCCCc-CceeChhh------------------------ccCCCCCCEEECCCCc-Cc---cCChhhcc
Confidence 46778888888888775 43333211 1146677777776642 22 23334567
Q ss_pred CCCcceEeeecCCCCCCCCcC-CC------CCCCCCeEEEccCcchHHhhccCCCCCcccccCCCceeecccc
Q 002044 895 MPQLSSMKISYCSKLNSLPDQ-LL------QSTTLEELEIIRCPILEERFKKDTGEDWSKITHIPKIKIHGEY 960 (976)
Q Consensus 895 l~~L~~L~l~~c~~L~~lp~~-l~------~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~n~ 960 (976)
+++|+.|++++|+ ++.+|.. +. ..++|+.|++.++|.-.. ...+..+....++..+++++|.
T Consensus 262 l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~---~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 262 HKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW---EIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG---GSCGGGGTTCCCGGGEEC----
T ss_pred CCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCccccc---ccCccccccccceeEEEecccC
Confidence 7888888888776 6666532 21 235677788887764211 1233445566777777777663
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.74 E-value=7.4e-17 Score=177.35 Aligned_cols=234 Identities=19% Similarity=0.262 Sum_probs=139.1
Q ss_pred CcceEEecCcccccCCCCcccCccccCCCccceecC--ccccccC-ccccccCCccEEecCCCCCCccc-chhhcccCCC
Q 002044 581 GLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLP-ETCCELLNLQTLNMCGSPGLKRL-PQGIGKLINL 656 (976)
Q Consensus 581 ~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp-~~i~~L~~L~~L~l~~~~~l~~l-p~~i~~l~~L 656 (976)
+|++++++ ++.+..+|..+. .+|++|++ +.+..+| ..+.++++|++|++++|. +..+ |..++++++|
T Consensus 34 ~l~~l~~~------~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 104 (332)
T 2ft3_A 34 HLRVVQCS------DLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKL 104 (332)
T ss_dssp ETTEEECC------SSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTC
T ss_pred cCCEEECC------CCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCC
Confidence 57778877 556667776663 57888888 5566664 467888888888888887 5555 6677888888
Q ss_pred cEEEecccccccCcccccCCCCCCcCCceEEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCCC
Q 002044 657 RHLMFEVDYLEYMPKGIERLTSLRTLSEFVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKK 736 (976)
Q Consensus 657 ~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~ 736 (976)
++|++++|.+..+|..+. ++|++|++
T Consensus 105 ~~L~L~~n~l~~l~~~~~--~~L~~L~l---------------------------------------------------- 130 (332)
T 2ft3_A 105 QKLYISKNHLVEIPPNLP--SSLVELRI---------------------------------------------------- 130 (332)
T ss_dssp CEEECCSSCCCSCCSSCC--TTCCEEEC----------------------------------------------------
T ss_pred CEEECCCCcCCccCcccc--ccCCEEEC----------------------------------------------------
Confidence 888887777777776554 44544432
Q ss_pred CCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEeecCCCC--CCcccccccccccEEEEeCCCCCCCCC
Q 002044 737 KNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITGFKGRT--LMLSWIVSLNKLKKLRLLFCDKCEVMP 814 (976)
Q Consensus 737 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~--~~p~~~~~l~~L~~L~L~~~~~~~~l~ 814 (976)
+.+..... ....+..+++|+.|++++|.... ..|..+..+ +|+.|++++|.... +|
T Consensus 131 --------~~n~i~~~------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~ 188 (332)
T 2ft3_A 131 --------HDNRIRKV------------PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IP 188 (332)
T ss_dssp --------CSSCCCCC------------CSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CC
T ss_pred --------CCCccCcc------------CHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cC
Confidence 11110000 00113345677777777776642 336666666 99999999986443 44
Q ss_pred CCCCCCCcceeeccccccceEeC-ccccCCCcCcccccccCCCCCCCCCccCccCCccceeeecccccccccccCCCccc
Q 002044 815 ALGILPSLEVLKIRFMKSVKRVG-NEFLGTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDIT 893 (976)
Q Consensus 815 ~l~~L~~L~~L~L~~~~~l~~~~-~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~ 893 (976)
. ...++|++|++++|. ++.++ ..+.. +++|+.|.+.+. ......+..+.
T Consensus 189 ~-~~~~~L~~L~l~~n~-i~~~~~~~l~~-------------------------l~~L~~L~L~~N---~l~~~~~~~~~ 238 (332)
T 2ft3_A 189 K-DLPETLNELHLDHNK-IQAIELEDLLR-------------------------YSKLYRLGLGHN---QIRMIENGSLS 238 (332)
T ss_dssp S-SSCSSCSCCBCCSSC-CCCCCTTSSTT-------------------------CTTCSCCBCCSS---CCCCCCTTGGG
T ss_pred c-cccCCCCEEECCCCc-CCccCHHHhcC-------------------------CCCCCEEECCCC---cCCcCChhHhh
Confidence 3 123789999999886 44333 22222 344444444331 11112222344
Q ss_pred cCCCcceEeeecCCCCCCCCcCCCCCCCCCeEEEccC
Q 002044 894 IMPQLSSMKISYCSKLNSLPDQLLQSTTLEELEIIRC 930 (976)
Q Consensus 894 ~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c 930 (976)
.+++|+.|++++|. +..+|..+..+++|+.|++++|
T Consensus 239 ~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 239 FLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp GCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCC
Confidence 55555666665553 4555555555555666665555
No 51
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.74 E-value=2.8e-17 Score=198.33 Aligned_cols=415 Identities=17% Similarity=0.130 Sum_probs=215.9
Q ss_pred ccCceeEEEEEccCCCCCcc-cccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCc-
Q 002044 526 SQEKLRHLMLVLGYKNSFPV-SIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPK- 603 (976)
Q Consensus 526 ~~~~~r~l~~~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~- 603 (976)
...+++++.+..+.+..++. .+..+++|++|++++|.+.... +..|.++++|++|+|+ ++.+..+|.
T Consensus 74 ~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~-----~~~f~~L~~L~~L~Ls------~N~l~~l~~~ 142 (635)
T 4g8a_A 74 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-----LGAFSGLSSLQKLVAV------ETNLASLENF 142 (635)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-----GGGGTTCTTCCEEECT------TSCCCCSTTC
T ss_pred CCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC-----HHHhcCCCCCCEEECC------CCcCCCCChh
Confidence 34678999998888776644 5788999999999999875533 2338999999999999 666777775
Q ss_pred cccCCCccceecC--ccccc--cCccccccCCccEEecCCCCCCccc-chhhcccCCCc----EEEecccccccCccccc
Q 002044 604 GIKKLRHLRYLKL--YLVEK--LPETCCELLNLQTLNMCGSPGLKRL-PQGIGKLINLR----HLMFEVDYLEYMPKGIE 674 (976)
Q Consensus 604 ~i~~L~~Lr~L~L--~~~~~--lp~~i~~L~~L~~L~l~~~~~l~~l-p~~i~~l~~L~----~L~l~~~~l~~lp~~i~ 674 (976)
.++++++|++|++ +.+.. +|..++.+++|++|++++|. +..+ |..+..+.+++ .++++.+.+..++.+..
T Consensus 143 ~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~ 221 (635)
T 4g8a_A 143 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 221 (635)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT
T ss_pred hhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccccccccchhhhhhhhhhhhcccCcccccCcccc
Confidence 5899999999999 45554 57889999999999999997 6665 45566665544 45556666655443322
Q ss_pred -------------------------CCCCCCcCCceEEecCC-----CCCCCccccccc---------------------
Q 002044 675 -------------------------RLTSLRTLSEFVVVNGS-----GKYGSKACNLEG--------------------- 703 (976)
Q Consensus 675 -------------------------~l~~L~~L~~~~~~~~~-----~~~~~~~~~l~~--------------------- 703 (976)
.+..++........... .........+..
T Consensus 222 ~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 301 (635)
T 4g8a_A 222 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDL 301 (635)
T ss_dssp TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTT
T ss_pred cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhh
Confidence 22222211111100000 000000000000
Q ss_pred ccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccc-------hhhHHHHhhcCCCCCCCc
Q 002044 704 LRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDEN-------EANHEAVCEALQPPPNLE 776 (976)
Q Consensus 704 L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~L~ 776 (976)
...+..+. .+........ ....+.....|+.|.+..+........... .............+++|+
T Consensus 302 ~~~~~~l~-~l~~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~ 374 (635)
T 4g8a_A 302 FNCLTNVS-SFSLVSVTIE------RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLE 374 (635)
T ss_dssp TGGGTTCS-EEEEESCEEE------ECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCC
T ss_pred hhhhcccc-cccccccccc------cccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccc
Confidence 00001111 1111111000 001122334555666554432110000000 000000001112345666
Q ss_pred eEEEeecCCCCC--CcccccccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceEeCcc-ccCCCcCccccccc
Q 002044 777 SLQITGFKGRTL--MLSWIVSLNKLKKLRLLFCDKCEVMPALGILPSLEVLKIRFMKSVKRVGNE-FLGTEISDHIHIQD 853 (976)
Q Consensus 777 ~L~L~~~~~~~~--~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~-~~~~~~~~~l~l~~ 853 (976)
.|+++++..... .+.....+.+|+.|++..+......+.+..+++|+.+++.++......+.. +.....+..++++.
T Consensus 375 ~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~ 454 (635)
T 4g8a_A 375 FLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 454 (635)
T ss_dssp EEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTT
T ss_pred cchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccc
Confidence 666665544321 122223455566666555543333334555666666666655433222211 12222333344444
Q ss_pred CCCCCCCCCccCccCCccceeeecccccccccccCCCccccCCCcceEeeecCCCCCCC-CcCCCCCCCCCeEEEccCcc
Q 002044 854 GSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNSL-PDQLLQSTTLEELEIIRCPI 932 (976)
Q Consensus 854 ~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l-p~~l~~l~~L~~L~l~~c~~ 932 (976)
+.+...... ....++.|+.|.+.+...... ..+..+..+++|+.|++++|. ++.+ |..+.++++|++|++++|
T Consensus 455 n~l~~~~~~-~~~~~~~L~~L~Ls~N~~~~~--~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~f~~l~~L~~L~Ls~N-- 528 (635)
T 4g8a_A 455 THTRVAFNG-IFNGLSSLEVLKMAGNSFQEN--FLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHN-- 528 (635)
T ss_dssp SCCEECCTT-TTTTCTTCCEEECTTCEEGGG--EECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTS--
T ss_pred ccccccccc-ccccchhhhhhhhhhcccccc--cCchhhhhccccCEEECCCCc-cCCcChHHHcCCCCCCEEECCCC--
Confidence 443322221 123455666666654332221 123335567777777777765 4544 455666777777777777
Q ss_pred hHHhhccCCCCCcccccCCCceeecccccccCcchh
Q 002044 933 LEERFKKDTGEDWSKITHIPKIKIHGEYVQGSPPLL 968 (976)
Q Consensus 933 l~~~~~~~~~~~~~~i~~l~~l~~~~n~~~~~~~~~ 968 (976)
++....+..+..++.+..+++++|.+++.+|..
T Consensus 529 ---~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 561 (635)
T 4g8a_A 529 ---NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561 (635)
T ss_dssp ---CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred ---cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence 455445555666677777777777777666653
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=3.9e-17 Score=192.40 Aligned_cols=85 Identities=27% Similarity=0.338 Sum_probs=54.6
Q ss_pred CcceEEecCcccccCCCCcccCccccCCCccceecC--ccccccCccccccCCccEEecCCCCCCcccchhhcccCCCcE
Q 002044 581 GLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLPETCCELLNLQTLNMCGSPGLKRLPQGIGKLINLRH 658 (976)
Q Consensus 581 ~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~ 658 (976)
++++|+++ ++.+..+|..+. ++|++|+| +.+..+|. .+++|++|+|++|. +..+|. .+++|++
T Consensus 41 ~l~~L~ls------~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~ 105 (622)
T 3g06_A 41 GNAVLNVG------ESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLE 105 (622)
T ss_dssp CCCEEECC------SSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCE
T ss_pred CCcEEEec------CCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCE
Confidence 46777776 555666666554 56777777 55666665 45677777777776 666665 5667777
Q ss_pred EEecccccccCcccccCCCCCCcCC
Q 002044 659 LMFEVDYLEYMPKGIERLTSLRTLS 683 (976)
Q Consensus 659 L~l~~~~l~~lp~~i~~l~~L~~L~ 683 (976)
|++++|.+..+|. .+++|+.|+
T Consensus 106 L~Ls~N~l~~l~~---~l~~L~~L~ 127 (622)
T 3g06_A 106 LSIFSNPLTHLPA---LPSGLCKLW 127 (622)
T ss_dssp EEECSCCCCCCCC---CCTTCCEEE
T ss_pred EECcCCcCCCCCC---CCCCcCEEE
Confidence 7776666666665 345555554
No 53
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.72 E-value=2.2e-18 Score=187.47 Aligned_cols=124 Identities=25% Similarity=0.370 Sum_probs=99.7
Q ss_pred CceeEEEecCcccch--hhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecC--cccc-ccCcc
Q 002044 551 RKLRSLMLSYNTLNQ--KASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVE-KLPET 625 (976)
Q Consensus 551 ~~Lr~L~l~~~~~~~--~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~-~lp~~ 625 (976)
.+++.|+++++.+.+ ..+ ..+.++++|++|+++++..+ ...+|..++++++|++|++ +.+. .+|..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~-----~~l~~l~~L~~L~L~~~n~l----~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 120 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIP-----SSLANLPYLNFLYIGGINNL----VGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120 (313)
T ss_dssp CCEEEEEEECCCCSSCEECC-----GGGGGCTTCSEEEEEEETTE----ESCCCGGGGGCTTCSEEEEEEECCEEECCGG
T ss_pred ceEEEEECCCCCccCCcccC-----hhHhCCCCCCeeeCCCCCcc----cccCChhHhcCCCCCEEECcCCeeCCcCCHH
Confidence 579999999998764 322 23889999999999853222 2357888999999999999 5665 78889
Q ss_pred ccccCCccEEecCCCCCCcccchhhcccCCCcEEEecccccc-cCcccccCCC-CCCcCC
Q 002044 626 CCELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLE-YMPKGIERLT-SLRTLS 683 (976)
Q Consensus 626 i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~-~L~~L~ 683 (976)
+.++++|++|++++|.....+|..++.+++|++|++++|.+. .+|..++.++ +|+.|+
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~ 180 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE
T ss_pred HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEE
Confidence 999999999999999833378999999999999999888887 7888888777 777765
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=3.6e-17 Score=181.53 Aligned_cols=250 Identities=16% Similarity=0.174 Sum_probs=129.3
Q ss_pred CCcceEEecCcccccCCCCcccCc-cccCCCccceecC--ccccccC-ccccccCCccEEecCCCCCCcccchh-hcccC
Q 002044 580 TGLRVLRIEGMKSLIGSGTNEIPK-GIKKLRHLRYLKL--YLVEKLP-ETCCELLNLQTLNMCGSPGLKRLPQG-IGKLI 654 (976)
Q Consensus 580 ~~Lr~L~L~~~~~l~~~~~~~lp~-~i~~L~~Lr~L~L--~~~~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~l~ 654 (976)
++|++|+++ ++.+..+|. .+.++++|++|++ +.+..++ ..+.++++|++|++++|. +..+|.. +++++
T Consensus 52 ~~L~~L~l~------~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~ 124 (353)
T 2z80_A 52 EAVKSLDLS------NNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLS 124 (353)
T ss_dssp TTCCEEECT------TSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCT
T ss_pred ccCcEEECC------CCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCc
Confidence 356666666 444555554 5666666666666 3455543 346666666666666665 5555554 56666
Q ss_pred CCcEEEecccccccCcc--cccCCCCCCcCCceEEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhcc
Q 002044 655 NLRHLMFEVDYLEYMPK--GIERLTSLRTLSEFVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAH 732 (976)
Q Consensus 655 ~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~ 732 (976)
+|++|++++|.+..+|. .++.+++|++|+
T Consensus 125 ~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~------------------------------------------------- 155 (353)
T 2z80_A 125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILR------------------------------------------------- 155 (353)
T ss_dssp TCSEEECTTCCCSSSCSSCSCTTCTTCCEEE-------------------------------------------------
T ss_pred cCCEEECCCCCCcccCchhhhccCCCCcEEE-------------------------------------------------
Confidence 66666666666665554 345555555554
Q ss_pred CCCCCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCC
Q 002044 733 LDKKKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEV 812 (976)
Q Consensus 733 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~ 812 (976)
++.+.... ......+..+++|+.|++++|......|.++..+++|+.|++++|.. ..
T Consensus 156 -----------l~~n~~~~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~ 212 (353)
T 2z80_A 156 -----------VGNMDTFT-----------KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-IL 212 (353)
T ss_dssp -----------EEESSSCC-----------EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS-TT
T ss_pred -----------CCCCcccc-----------ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc-cc
Confidence 33321000 00011223334455555555544444344555555555555555532 22
Q ss_pred CCC--CCCCCCcceeeccccccceEeCccccCCCcCcccccccCCCCCCCCCccCccCCccceeeecccccccc--cccC
Q 002044 813 MPA--LGILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEE--WDFG 888 (976)
Q Consensus 813 l~~--l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~--~~~~ 888 (976)
++. +..+++|+.|++++|. ++.++...... ....+.++.+.+.++. +.. ....
T Consensus 213 ~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~---------------------~~~~~~l~~l~L~~~~-l~~~~l~~l 269 (353)
T 2z80_A 213 LLEIFVDVTSSVECLELRDTD-LDTFHFSELST---------------------GETNSLIKKFTFRNVK-ITDESLFQV 269 (353)
T ss_dssp HHHHHHHHTTTEEEEEEESCB-CTTCCCC---------------------------CCCCCCEEEEESCB-CCHHHHHHH
T ss_pred chhhhhhhcccccEEECCCCc-ccccccccccc---------------------ccccchhhcccccccc-ccCcchhhh
Confidence 221 2234555555555543 21111100000 0012334444443321 100 0111
Q ss_pred CCccccCCCcceEeeecCCCCCCCCcCC-CCCCCCCeEEEccCcc
Q 002044 889 KEDITIMPQLSSMKISYCSKLNSLPDQL-LQSTTLEELEIIRCPI 932 (976)
Q Consensus 889 ~~~~~~l~~L~~L~l~~c~~L~~lp~~l-~~l~~L~~L~l~~c~~ 932 (976)
+..+..+++|+.|++++|. ++.+|..+ .++++|+.|++++|+-
T Consensus 270 ~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 270 MKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp HHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred HHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCCc
Confidence 2235578999999999986 78899775 7899999999999853
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.68 E-value=9.3e-19 Score=209.31 Aligned_cols=92 Identities=16% Similarity=0.229 Sum_probs=54.5
Q ss_pred cCCccceeeeccccc-ccccccCCCccccCCCcceEeeecCCCCCC--CCcCCCCCCCCCeEEEccCcchHHhhccCCCC
Q 002044 867 AFPKLKELKFFCLDE-WEEWDFGKEDITIMPQLSSMKISYCSKLNS--LPDQLLQSTTLEELEIIRCPILEERFKKDTGE 943 (976)
Q Consensus 867 ~fp~L~~L~l~~l~~-l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~--lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~ 943 (976)
.+++|+.|.+..|.+ +..... ......+|+|+.|++++|. +.. ++..+.++++|+.|++++|+ +..... ..
T Consensus 434 ~~~~L~~L~L~~~~~~l~~~~~-~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~---~~ 507 (592)
T 3ogk_B 434 GCKKLRRFAFYLRQGGLTDLGL-SYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAI---AA 507 (592)
T ss_dssp HCTTCCEEEEECCGGGCCHHHH-HHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHH---HH
T ss_pred hCCCCCEEEEecCCCCccHHHH-HHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHH---HH
Confidence 477888888876553 111110 0001247788888888776 432 44445667888888888886 322100 01
Q ss_pred CcccccCCCceeecccccccC
Q 002044 944 DWSKITHIPKIKIHGEYVQGS 964 (976)
Q Consensus 944 ~~~~i~~l~~l~~~~n~~~~~ 964 (976)
.+...++++.+++++|.+++.
T Consensus 508 ~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 508 AVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHCSSCCEEEEESCBCCTT
T ss_pred HHHhcCccCeeECcCCcCCHH
Confidence 123467788888888887754
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.68 E-value=6.4e-16 Score=182.02 Aligned_cols=115 Identities=21% Similarity=0.217 Sum_probs=71.8
Q ss_pred eeEEEEEccCCCCCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCC
Q 002044 530 LRHLMLVLGYKNSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLR 609 (976)
Q Consensus 530 ~r~l~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~ 609 (976)
++.+.+..+....+|..+. ++|++|++++|.+... + ..+++|++|+|+ ++.+..+|. .++
T Consensus 42 l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~l------p---~~l~~L~~L~Ls------~N~l~~lp~---~l~ 101 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSL------P---ALPPELRTLEVS------GNQLTSLPV---LPP 101 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCC------C---CCCTTCCEEEEC------SCCCSCCCC---CCT
T ss_pred CcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCC------C---CcCCCCCEEEcC------CCcCCcCCC---CCC
Confidence 4555555555555554443 6777777777765421 1 145677777777 445556665 566
Q ss_pred ccceecC--ccccccCccccccCCccEEecCCCCCCcccchhhcccCCCcEEEecccccccCcc
Q 002044 610 HLRYLKL--YLVEKLPETCCELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLEYMPK 671 (976)
Q Consensus 610 ~Lr~L~L--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lp~ 671 (976)
+|++|++ +.+..+|. .+.+|++|++++|. +..+|.. +++|++|++++|.+..+|.
T Consensus 102 ~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l~~l~~ 158 (622)
T 3g06_A 102 GLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLASLPA 158 (622)
T ss_dssp TCCEEEECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSCCCC
T ss_pred CCCEEECcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcCCCcCC
Confidence 7777777 55666665 45667777777775 6666654 3677777776666666654
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.65 E-value=6e-16 Score=167.97 Aligned_cols=86 Identities=22% Similarity=0.256 Sum_probs=59.3
Q ss_pred CCCCcccCccccCCCccceecC--ccccccCcc-ccccCCccEEecCCCCCCccc---chhhcccCCCcEEEeccccccc
Q 002044 595 GSGTNEIPKGIKKLRHLRYLKL--YLVEKLPET-CCELLNLQTLNMCGSPGLKRL---PQGIGKLINLRHLMFEVDYLEY 668 (976)
Q Consensus 595 ~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~l---p~~i~~l~~L~~L~l~~~~l~~ 668 (976)
+..+..+|..+. .+|++|++ +.+..+|.. +.++++|++|++++|. +..+ |..+..+++|++|++++|.+..
T Consensus 16 ~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~ 92 (306)
T 2z66_A 16 SKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVIT 92 (306)
T ss_dssp SSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCSEEE
T ss_pred CCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCCcccc
Confidence 555666776543 56777777 566677754 5677788888887776 5443 5666677788888887777777
Q ss_pred CcccccCCCCCCcCC
Q 002044 669 MPKGIERLTSLRTLS 683 (976)
Q Consensus 669 lp~~i~~l~~L~~L~ 683 (976)
+|..+..+++|++|+
T Consensus 93 l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 93 MSSNFLGLEQLEHLD 107 (306)
T ss_dssp EEEEEETCTTCCEEE
T ss_pred ChhhcCCCCCCCEEE
Confidence 777677777777664
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.63 E-value=3.3e-15 Score=170.92 Aligned_cols=233 Identities=19% Similarity=0.273 Sum_probs=159.5
Q ss_pred CCCCcccCccccCCCccceecC--ccccccC-ccccccCCccEEecCCCCCCcccc-hhhcccCCCcEEEecccccccCc
Q 002044 595 GSGTNEIPKGIKKLRHLRYLKL--YLVEKLP-ETCCELLNLQTLNMCGSPGLKRLP-QGIGKLINLRHLMFEVDYLEYMP 670 (976)
Q Consensus 595 ~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp-~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lp 670 (976)
+..+..+|..+. .++++|+| +.+..++ ..+.++++|++|+|++|. +..++ ..+..+++|++|++++|.+..+|
T Consensus 52 ~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 128 (440)
T 3zyj_A 52 RKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLTTIP 128 (440)
T ss_dssp SCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSSCCSSCC
T ss_pred CCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCCcCCeeC
Confidence 556667776654 56777777 5566665 567778888888888876 65554 45777888888888777777776
Q ss_pred c-cccCCCCCCcCCceEEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCC
Q 002044 671 K-GIERLTSLRTLSEFVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKE 749 (976)
Q Consensus 671 ~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 749 (976)
. .+..+++|+.|++..+. +. .+ .
T Consensus 129 ~~~~~~l~~L~~L~L~~N~------------i~----------~~-----~----------------------------- 152 (440)
T 3zyj_A 129 NGAFVYLSKLKELWLRNNP------------IE----------SI-----P----------------------------- 152 (440)
T ss_dssp TTTSCSCSSCCEEECCSCC------------CC----------EE-----C-----------------------------
T ss_pred HhHhhccccCceeeCCCCc------------cc----------cc-----C-----------------------------
Confidence 5 35666666655422111 00 00 0
Q ss_pred CCCCCCccchhhHHHHhhcCCCCCCCceEEEeecCCCC-CCcccccccccccEEEEeCCCCCCCCCCCCCCCCcceeecc
Q 002044 750 APVGMKDENEANHEAVCEALQPPPNLESLQITGFKGRT-LMLSWIVSLNKLKKLRLLFCDKCEVMPALGILPSLEVLKIR 828 (976)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~-~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~ 828 (976)
...+..+++|+.|++++|.... +.+..+..+++|+.|+|++|. +..+|.+..+++|+.|+|+
T Consensus 153 ----------------~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls 215 (440)
T 3zyj_A 153 ----------------SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPNLTPLIKLDELDLS 215 (440)
T ss_dssp ----------------TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCCCTTCSSCCEEECT
T ss_pred ----------------HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-CccccccCCCcccCEEECC
Confidence 0123445677888887754443 324467789999999999994 5678889999999999999
Q ss_pred ccccceEeCccccCCCcCcccccccCCCCCCCCCccCccCCccceeeecccccccccccCCCccccCCCcceEeeecCCC
Q 002044 829 FMKSVKRVGNEFLGTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSK 908 (976)
Q Consensus 829 ~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~ 908 (976)
+|. ++.++...+ ..+++|+.|.+.+. ......+..+..+++|+.|+|++|.
T Consensus 216 ~N~-l~~~~~~~~------------------------~~l~~L~~L~L~~n---~l~~~~~~~~~~l~~L~~L~L~~N~- 266 (440)
T 3zyj_A 216 GNH-LSAIRPGSF------------------------QGLMHLQKLWMIQS---QIQVIERNAFDNLQSLVEINLAHNN- 266 (440)
T ss_dssp TSC-CCEECTTTT------------------------TTCTTCCEEECTTC---CCCEECTTSSTTCTTCCEEECTTSC-
T ss_pred CCc-cCccChhhh------------------------ccCccCCEEECCCC---ceeEEChhhhcCCCCCCEEECCCCC-
Confidence 986 555533211 24677888877663 2223334456789999999999986
Q ss_pred CCCCCc-CCCCCCCCCeEEEccCcc
Q 002044 909 LNSLPD-QLLQSTTLEELEIIRCPI 932 (976)
Q Consensus 909 L~~lp~-~l~~l~~L~~L~l~~c~~ 932 (976)
+..+|. .+..+++|+.|++++||-
T Consensus 267 l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 267 LTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CCccChhHhccccCCCEEEcCCCCc
Confidence 777774 467889999999999864
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.63 E-value=3e-15 Score=171.99 Aligned_cols=233 Identities=24% Similarity=0.327 Sum_probs=159.2
Q ss_pred CCCCcccCccccCCCccceecC--cccccc-CccccccCCccEEecCCCCCCcccc-hhhcccCCCcEEEecccccccCc
Q 002044 595 GSGTNEIPKGIKKLRHLRYLKL--YLVEKL-PETCCELLNLQTLNMCGSPGLKRLP-QGIGKLINLRHLMFEVDYLEYMP 670 (976)
Q Consensus 595 ~~~~~~lp~~i~~L~~Lr~L~L--~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lp 670 (976)
+..+..+|..+. .+|++|+| +.+..+ |..+.++++|++|+|++|. +..++ ..+..+++|++|++++|.+..+|
T Consensus 63 ~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 139 (452)
T 3zyi_A 63 RRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNWLTVIP 139 (452)
T ss_dssp SSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSBCC
T ss_pred CCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCCcCCccC
Confidence 555666776554 57788888 556665 4567788888888888886 55554 56778888888888777777776
Q ss_pred cc-ccCCCCCCcCCceEEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCC
Q 002044 671 KG-IERLTSLRTLSEFVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKE 749 (976)
Q Consensus 671 ~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 749 (976)
.. ++.+++|+.|++..+. +. .+ .
T Consensus 140 ~~~~~~l~~L~~L~L~~N~------------l~----------~~-----~----------------------------- 163 (452)
T 3zyi_A 140 SGAFEYLSKLRELWLRNNP------------IE----------SI-----P----------------------------- 163 (452)
T ss_dssp TTTSSSCTTCCEEECCSCC------------CC----------EE-----C-----------------------------
T ss_pred hhhhcccCCCCEEECCCCC------------cc----------ee-----C-----------------------------
Confidence 54 5566666665422111 00 00 0
Q ss_pred CCCCCCccchhhHHHHhhcCCCCCCCceEEEeecCCCC-CCcccccccccccEEEEeCCCCCCCCCCCCCCCCcceeecc
Q 002044 750 APVGMKDENEANHEAVCEALQPPPNLESLQITGFKGRT-LMLSWIVSLNKLKKLRLLFCDKCEVMPALGILPSLEVLKIR 828 (976)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~-~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~ 828 (976)
...+..+++|+.|++++|.... +.+..+..+++|+.|+|++|. +..+|.+..+++|+.|+|+
T Consensus 164 ----------------~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls 226 (452)
T 3zyi_A 164 ----------------SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPNLTPLVGLEELEMS 226 (452)
T ss_dssp ----------------TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCCCTTCTTCCEEECT
T ss_pred ----------------HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccccccccccccEEECc
Confidence 0123445677778887754443 323457789999999999995 5567889999999999999
Q ss_pred ccccceEeCccccCCCcCcccccccCCCCCCCCCccCccCCccceeeecccccccccccCCCccccCCCcceEeeecCCC
Q 002044 829 FMKSVKRVGNEFLGTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSK 908 (976)
Q Consensus 829 ~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~ 908 (976)
+|. +..++...+ ..+++|+.|.+.+. ......+..+..+++|+.|++++|.
T Consensus 227 ~N~-l~~~~~~~~------------------------~~l~~L~~L~L~~n---~l~~~~~~~~~~l~~L~~L~L~~N~- 277 (452)
T 3zyi_A 227 GNH-FPEIRPGSF------------------------HGLSSLKKLWVMNS---QVSLIERNAFDGLASLVELNLAHNN- 277 (452)
T ss_dssp TSC-CSEECGGGG------------------------TTCTTCCEEECTTS---CCCEECTTTTTTCTTCCEEECCSSC-
T ss_pred CCc-CcccCcccc------------------------cCccCCCEEEeCCC---cCceECHHHhcCCCCCCEEECCCCc-
Confidence 987 444433211 24677888887763 2223334456789999999999985
Q ss_pred CCCCC-cCCCCCCCCCeEEEccCcc
Q 002044 909 LNSLP-DQLLQSTTLEELEIIRCPI 932 (976)
Q Consensus 909 L~~lp-~~l~~l~~L~~L~l~~c~~ 932 (976)
+..+| ..+..+++|+.|++++||-
T Consensus 278 l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 278 LSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CCccChHHhccccCCCEEEccCCCc
Confidence 77777 4467889999999999863
No 60
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.63 E-value=1.9e-18 Score=199.72 Aligned_cols=359 Identities=18% Similarity=0.133 Sum_probs=202.2
Q ss_pred CceeEEEEEccCCCCCc--ccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCccc-Ccc
Q 002044 528 EKLRHLMLVLGYKNSFP--VSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEI-PKG 604 (976)
Q Consensus 528 ~~~r~l~~~~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~l-p~~ 604 (976)
.+++++.+..+...... ..+..+++|++|++++|.+....... ++..+..+++|++|+|+++ .+... +..
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~~l~~~~~L~~L~Ls~n------~l~~~~~~~ 75 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKD-ISSALRVNPALAELNLRSN------ELGDVGVHC 75 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHH-HHHHHHTCTTCCEEECTTC------CCHHHHHHH
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHH-HHHHHHhCCCcCEEeCCCC------cCChHHHHH
Confidence 45677777766654322 22556788888888888865443322 4555778888888888843 33221 112
Q ss_pred c-cCCC----ccceecC--cccc-----ccCccccccCCccEEecCCCCCCccc-chhhc-----ccCCCcEEEeccccc
Q 002044 605 I-KKLR----HLRYLKL--YLVE-----KLPETCCELLNLQTLNMCGSPGLKRL-PQGIG-----KLINLRHLMFEVDYL 666 (976)
Q Consensus 605 i-~~L~----~Lr~L~L--~~~~-----~lp~~i~~L~~L~~L~l~~~~~l~~l-p~~i~-----~l~~L~~L~l~~~~l 666 (976)
+ ..+. +|++|++ +.+. .+|..+.++++|++|++++|. +... +..+. ..++|++|++++|.+
T Consensus 76 l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 154 (461)
T 1z7x_W 76 VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSL 154 (461)
T ss_dssp HHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCC
Confidence 2 2233 6888888 3344 457778888888888888887 5422 22222 255788888877766
Q ss_pred cc-----CcccccCCCCCCcCCceEEecCCCCCCCcccccc-ccc-ccccCCCceEEcCcCCCCCh-hhHHhccCCCCCC
Q 002044 667 EY-----MPKGIERLTSLRTLSEFVVVNGSGKYGSKACNLE-GLR-YLNHLRGSLKIRGLGNVTDI-DEAKSAHLDKKKN 738 (976)
Q Consensus 667 ~~-----lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~-~L~-~L~~L~~~l~i~~l~~~~~~-~~~~~~~l~~~~~ 738 (976)
.. ++..+..+++|+.|++..+. .... ....+. .+. .+..|+ .+.+.+.. +... .......+..+++
T Consensus 155 ~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~---~~~~l~~~l~~~~~~L~-~L~L~~n~-l~~~~~~~l~~~l~~~~~ 228 (461)
T 1z7x_W 155 SAASCEPLASVLRAKPDFKELTVSNND-INEA---GVRVLCQGLKDSPCQLE-ALKLESCG-VTSDNCRDLCGIVASKAS 228 (461)
T ss_dssp BGGGHHHHHHHHHHCTTCCEEECCSSB-CHHH---HHHHHHHHHHHSCCCCC-EEECTTSC-CBTTHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHhhCCCCCEEECcCCC-cchH---HHHHHHHHHhcCCCCce-EEEccCCC-CcHHHHHHHHHHHHhCCC
Confidence 64 34556667788877643322 1100 000010 000 011222 33333321 1111 1122334456678
Q ss_pred CceEEEEecCCCCCCCCccchhhHHHHhhc-CCCCCCCceEEEeecCCCCC----CcccccccccccEEEEeCCCCCCC-
Q 002044 739 LVVLILRFNKEAPVGMKDENEANHEAVCEA-LQPPPNLESLQITGFKGRTL----MLSWIVSLNKLKKLRLLFCDKCEV- 812 (976)
Q Consensus 739 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~L~~~~~~~~----~p~~~~~l~~L~~L~L~~~~~~~~- 812 (976)
|+.|+++++... ......+... ...+++|+.|++++|.+... ++..+..+++|+.|+|++|.....
T Consensus 229 L~~L~Ls~n~l~--------~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 300 (461)
T 1z7x_W 229 LRELALGSNKLG--------DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300 (461)
T ss_dssp CCEEECCSSBCH--------HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred ccEEeccCCcCC--------hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH
Confidence 888888876432 1112222232 23577888888888876652 255566678888888888753211
Q ss_pred ---CCC--CCCCCCcceeeccccccceEeCccccCCCcCcccccccCCCCCCCCCccCccCCccceeeeccccccccccc
Q 002044 813 ---MPA--LGILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDF 887 (976)
Q Consensus 813 ---l~~--l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~ 887 (976)
+.. ....++|++|++++|. +...+...+.. ....+++|+.|.+.+. .+.....
T Consensus 301 ~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~--------------------~l~~~~~L~~L~Ls~n-~i~~~~~ 358 (461)
T 1z7x_W 301 ARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSS--------------------VLAQNRFLLELQISNN-RLEDAGV 358 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHH--------------------HHHHCSSCCEEECCSS-BCHHHHH
T ss_pred HHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHH--------------------HHhhCCCccEEEccCC-ccccccH
Confidence 110 1234688888888876 22211000000 0113578888888764 2222110
Q ss_pred --CCCccc-cCCCcceEeeecCCCCC-----CCCcCCCCCCCCCeEEEccCc
Q 002044 888 --GKEDIT-IMPQLSSMKISYCSKLN-----SLPDQLLQSTTLEELEIIRCP 931 (976)
Q Consensus 888 --~~~~~~-~l~~L~~L~l~~c~~L~-----~lp~~l~~l~~L~~L~l~~c~ 931 (976)
....+. ..++|++|++++|. ++ .+|..+..+++|++|++++|+
T Consensus 359 ~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 359 RELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 000011 26799999999986 55 577777778999999999995
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.63 E-value=8e-16 Score=176.75 Aligned_cols=236 Identities=19% Similarity=0.206 Sum_probs=163.2
Q ss_pred EEEEEccCCCCCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccC-ccccCCCc
Q 002044 532 HLMLVLGYKNSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIP-KGIKKLRH 610 (976)
Q Consensus 532 ~l~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp-~~i~~L~~ 610 (976)
.+.........+|..+ .+++++|++++|.+...... .|.++++|++|+|+ ++.+..++ ..+.++.+
T Consensus 58 ~v~c~~~~l~~iP~~~--~~~l~~L~L~~n~i~~~~~~-----~~~~l~~L~~L~Ls------~n~i~~~~~~~~~~l~~ 124 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGI--PSNTRYLNLMENNIQMIQAD-----TFRHLHHLEVLQLG------RNSIRQIEVGAFNGLAS 124 (452)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECTT-----TTTTCTTCCEEECC------SSCCCEECTTTTTTCTT
T ss_pred EEEECCCCcCccCCCC--CCCccEEECcCCcCceECHH-----HcCCCCCCCEEECC------CCccCCcChhhccCccc
Confidence 3444444444555443 36788999988886554322 27888899999998 55565654 67888888
Q ss_pred cceecC--ccccccCcc-ccccCCccEEecCCCCCCcccch-hhcccCCCcEEEecc-cccccCcc-cccCCCCCCcCCc
Q 002044 611 LRYLKL--YLVEKLPET-CCELLNLQTLNMCGSPGLKRLPQ-GIGKLINLRHLMFEV-DYLEYMPK-GIERLTSLRTLSE 684 (976)
Q Consensus 611 Lr~L~L--~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~l~~-~~l~~lp~-~i~~l~~L~~L~~ 684 (976)
|++|+| +.+..+|.. +..+++|++|+|++|. +..+|. .+.++++|++|+++. +.+..+|. .+..+++|+.|++
T Consensus 125 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L 203 (452)
T 3zyi_A 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203 (452)
T ss_dssp CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEEC
Confidence 999998 567777754 7788889999998887 777765 578888999998844 66777765 3667777777653
Q ss_pred eEEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhHHH
Q 002044 685 FVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHEA 764 (976)
Q Consensus 685 ~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 764 (976)
..+. +..+ ..+..+.+|+.|+++++... ..
T Consensus 204 ~~n~------------l~~~--------------------------~~~~~l~~L~~L~Ls~N~l~------------~~ 233 (452)
T 3zyi_A 204 GMCN------------IKDM--------------------------PNLTPLVGLEELEMSGNHFP------------EI 233 (452)
T ss_dssp TTSC------------CSSC--------------------------CCCTTCTTCCEEECTTSCCS------------EE
T ss_pred CCCc------------cccc--------------------------ccccccccccEEECcCCcCc------------cc
Confidence 2211 1000 01344567778887766533 11
Q ss_pred HhhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccccc
Q 002044 765 VCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMP-ALGILPSLEVLKIRFMK 831 (976)
Q Consensus 765 ~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~L~~~~ 831 (976)
.+..+..+++|+.|++++|.+....|..+..+++|+.|+|++|......+ .+..+++|+.|+|++|+
T Consensus 234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 13346677889999999998887767778888999999999985443322 26788999999998876
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.62 E-value=1e-15 Score=175.21 Aligned_cols=236 Identities=20% Similarity=0.226 Sum_probs=159.7
Q ss_pred EEEEEccCCCCCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccC-ccccCCCc
Q 002044 532 HLMLVLGYKNSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIP-KGIKKLRH 610 (976)
Q Consensus 532 ~l~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp-~~i~~L~~ 610 (976)
.+.........+|..+. ++++.|++++|.+...... .|.++++|++|+|+ ++.+..++ ..+.++.+
T Consensus 47 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~-----~~~~l~~L~~L~Ls------~n~i~~i~~~~~~~l~~ 113 (440)
T 3zyj_A 47 KVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVN-----SFKHLRHLEILQLS------RNHIRTIEIGAFNGLAN 113 (440)
T ss_dssp EEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTT-----TTSSCSSCCEEECC------SSCCCEECGGGGTTCSS
T ss_pred EEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHH-----HhhCCCCCCEEECC------CCcCCccChhhccCCcc
Confidence 34444444455554443 6788888888876544322 27788888888888 55565555 56788888
Q ss_pred cceecC--ccccccCc-cccccCCccEEecCCCCCCcccch-hhcccCCCcEEEecc-cccccCcc-cccCCCCCCcCCc
Q 002044 611 LRYLKL--YLVEKLPE-TCCELLNLQTLNMCGSPGLKRLPQ-GIGKLINLRHLMFEV-DYLEYMPK-GIERLTSLRTLSE 684 (976)
Q Consensus 611 Lr~L~L--~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~l~~-~~l~~lp~-~i~~l~~L~~L~~ 684 (976)
|++|+| +.+..+|. .+..+++|++|++++|. +..+|. .+.++++|++|+++. +.+..+|. .+..+++|+.|++
T Consensus 114 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L 192 (440)
T 3zyj_A 114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL 192 (440)
T ss_dssp CCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEEC
T ss_pred CCEEECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecC
Confidence 888888 56777775 57788888888888887 666665 577888888888844 56666664 4667777777653
Q ss_pred eEEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhHHH
Q 002044 685 FVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHEA 764 (976)
Q Consensus 685 ~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 764 (976)
..+. +..+. .+..+.+|+.|+++++.... .
T Consensus 193 ~~n~------------l~~~~--------------------------~~~~l~~L~~L~Ls~N~l~~------------~ 222 (440)
T 3zyj_A 193 AMCN------------LREIP--------------------------NLTPLIKLDELDLSGNHLSA------------I 222 (440)
T ss_dssp TTSC------------CSSCC--------------------------CCTTCSSCCEEECTTSCCCE------------E
T ss_pred CCCc------------Ccccc--------------------------ccCCCcccCEEECCCCccCc------------c
Confidence 2211 11000 13445577777777664320 1
Q ss_pred HhhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccccc
Q 002044 765 VCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMP-ALGILPSLEVLKIRFMK 831 (976)
Q Consensus 765 ~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~L~~~~ 831 (976)
.+..+..+++|+.|++++|.+..+.+..+..+++|+.|+|++|......+ .+..+++|+.|+|++|+
T Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 12346677889999999988887767778888999999999985443332 36788999999998876
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.62 E-value=5.1e-16 Score=168.54 Aligned_cols=222 Identities=22% Similarity=0.156 Sum_probs=137.8
Q ss_pred CceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCccc---CccccCCCccceecC--ccccccCcc
Q 002044 551 RKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEI---PKGIKKLRHLRYLKL--YLVEKLPET 625 (976)
Q Consensus 551 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~l---p~~i~~L~~Lr~L~L--~~~~~lp~~ 625 (976)
++|++|++++|.+.... ...|.++++|++|+|+ ++.+..+ |..+..+.+|++|++ +.+..+|..
T Consensus 28 ~~l~~L~L~~n~l~~i~-----~~~~~~l~~L~~L~L~------~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~ 96 (306)
T 2z66_A 28 SSATRLELESNKLQSLP-----HGVFDKLTQLTKLSLS------SNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 96 (306)
T ss_dssp TTCCEEECCSSCCCCCC-----TTTTTTCTTCSEEECC------SSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE
T ss_pred CCCCEEECCCCccCccC-----HhHhhccccCCEEECC------CCccCcccCcccccccccccCEEECCCCccccChhh
Confidence 56777777777654321 2225677777777777 3333333 455566777777777 456667766
Q ss_pred ccccCCccEEecCCCCCCcccch--hhcccCCCcEEEecccccccCc-ccccCCCCCCcCCceEEecCCCCCCCcccccc
Q 002044 626 CCELLNLQTLNMCGSPGLKRLPQ--GIGKLINLRHLMFEVDYLEYMP-KGIERLTSLRTLSEFVVVNGSGKYGSKACNLE 702 (976)
Q Consensus 626 i~~L~~L~~L~l~~~~~l~~lp~--~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~ 702 (976)
+..+++|++|++++|. +..+|. .+..+++|++|++++|.+...+ ..++.+++|++|++..+. +.
T Consensus 97 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~------------l~ 163 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS------------FQ 163 (306)
T ss_dssp EETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE------------EG
T ss_pred cCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc------------cc
Confidence 7777777777777776 555553 5677777777777666665443 335566666665432111 00
Q ss_pred cccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEee
Q 002044 703 GLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITG 782 (976)
Q Consensus 703 ~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~ 782 (976)
. ......+..+++|+.|+++++.... ..+..+..+++|+.|++++
T Consensus 164 ~-----------------------~~~~~~~~~l~~L~~L~Ls~n~l~~------------~~~~~~~~l~~L~~L~L~~ 208 (306)
T 2z66_A 164 E-----------------------NFLPDIFTELRNLTFLDLSQCQLEQ------------LSPTAFNSLSSLQVLNMSH 208 (306)
T ss_dssp G-----------------------GEECSCCTTCTTCCEEECTTSCCCE------------ECTTTTTTCTTCCEEECTT
T ss_pred c-----------------------ccchhHHhhCcCCCEEECCCCCcCC------------cCHHHhcCCCCCCEEECCC
Confidence 0 0001123445566677666554320 1123456677889999988
Q ss_pred cCCCCCCcccccccccccEEEEeCCCCCCCCC-CCCCCC-Ccceeeccccc
Q 002044 783 FKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMP-ALGILP-SLEVLKIRFMK 831 (976)
Q Consensus 783 ~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~L~-~L~~L~L~~~~ 831 (976)
|.+....+..+..+++|+.|+|++|......+ .+..+| +|++|+|++|+
T Consensus 209 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp SCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 88877645567788999999999987655444 467774 89999998876
No 64
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.61 E-value=4.2e-16 Score=138.82 Aligned_cols=81 Identities=23% Similarity=0.386 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhhhhHHHHhhhhHhhcCcHHHHHHHHHHHHHHHHHHHHHHhc--ccCChhHHHHHHHHHHhhcchhhhhH
Q 002044 4 AIVSVVLQQLISVAVEETKGGVRLVTGVGTEVKRLQDNLEAIQAVLVDAERR--QLEELPVRLWLEKLKEASYDMEDMLD 81 (976)
Q Consensus 4 ~~v~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~l~~~~yd~ed~ld 81 (976)
|+|+++++||++ ++.+|+.++.|+++++++|+++|++|++||.+|+.+ +.+++.++.|+++||++|||+||+||
T Consensus 1 a~v~~ll~KL~~----ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD 76 (115)
T 3qfl_A 1 AAISNLIPKLGE----LLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVD 76 (115)
T ss_dssp CTTCSHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH----HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999 899999999999999999999999999999999998 56789999999999999999999999
Q ss_pred HHHHHHH
Q 002044 82 EWNTARL 88 (976)
Q Consensus 82 ~~~~~~~ 88 (976)
+|.++..
T Consensus 77 ~f~~~~~ 83 (115)
T 3qfl_A 77 KFLVQVD 83 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9998873
No 65
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.61 E-value=8.4e-17 Score=192.32 Aligned_cols=62 Identities=11% Similarity=0.126 Sum_probs=41.2
Q ss_pred cCCccceeeecccccccccccCCCccccCCCcceEeeecCCCCCC--CCcCCCCCCCCCeEEEccCc
Q 002044 867 AFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNS--LPDQLLQSTTLEELEIIRCP 931 (976)
Q Consensus 867 ~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~--lp~~l~~l~~L~~L~l~~c~ 931 (976)
.+|+|+.|.+.++. +..... +..+..+++|++|+|++|+ +.. ++..+..+++|+.|++++|+
T Consensus 461 ~~~~L~~L~L~~n~-l~~~~~-~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 461 YSPNVRWMLLGYVG-ESDEGL-MEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp SCTTCCEEEECSCC-SSHHHH-HHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred hCccceEeeccCCC-CCHHHH-HHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 47788888887653 222111 1113467889999999998 542 44445567889999999995
No 66
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.61 E-value=2.3e-18 Score=199.06 Aligned_cols=372 Identities=16% Similarity=0.142 Sum_probs=191.6
Q ss_pred cCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecCc--ccccc-Cccc
Q 002044 550 ARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKLY--LVEKL-PETC 626 (976)
Q Consensus 550 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L~--~~~~l-p~~i 626 (976)
.++|++|+++++.+.... ...++..+++|++|+|++|. +.......+|..+..+++|++|+++ .+... +..+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~----~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 76 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDAR----WAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCV 76 (461)
T ss_dssp CEEEEEEEEESCCCCHHH----HHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHH
T ss_pred CccceehhhhhcccCchh----HHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHH
Confidence 357899999999865433 34457889999999999553 1112223567888899999999993 33331 2222
Q ss_pred -cccC----CccEEecCCCCCCc-----ccchhhcccCCCcEEEecccccccCc-c----c-ccCCCCCCcCCceEEecC
Q 002044 627 -CELL----NLQTLNMCGSPGLK-----RLPQGIGKLINLRHLMFEVDYLEYMP-K----G-IERLTSLRTLSEFVVVNG 690 (976)
Q Consensus 627 -~~L~----~L~~L~l~~~~~l~-----~lp~~i~~l~~L~~L~l~~~~l~~lp-~----~-i~~l~~L~~L~~~~~~~~ 690 (976)
..+. +|++|++++|. +. .+|..+..+++|++|++++|.+.... . . ....++|++|++..+. .
T Consensus 77 ~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l 154 (461)
T 1z7x_W 77 LQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-L 154 (461)
T ss_dssp HHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-C
T ss_pred HHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-C
Confidence 2344 79999999997 65 56888999999999999888775321 1 1 1234567777543221 1
Q ss_pred CCCCCCcccc-cccccccccCCCceEEcCcCCCCChh-hHHhccC-CCCCCCceEEEEecCCCCCCCCccchhhHHHHhh
Q 002044 691 SGKYGSKACN-LEGLRYLNHLRGSLKIRGLGNVTDID-EAKSAHL-DKKKNLVVLILRFNKEAPVGMKDENEANHEAVCE 767 (976)
Q Consensus 691 ~~~~~~~~~~-l~~L~~L~~L~~~l~i~~l~~~~~~~-~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 767 (976)
... .... ...+..+..|+ .+.+.+.. +.... ......+ ...++|+.|+++++... ......+..
T Consensus 155 ~~~---~~~~l~~~l~~~~~L~-~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~--------~~~~~~l~~ 221 (461)
T 1z7x_W 155 SAA---SCEPLASVLRAKPDFK-ELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVT--------SDNCRDLCG 221 (461)
T ss_dssp BGG---GHHHHHHHHHHCTTCC-EEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCB--------TTHHHHHHH
T ss_pred CHH---HHHHHHHHHhhCCCCC-EEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCc--------HHHHHHHHH
Confidence 100 0000 00111111121 22222211 10000 0000000 12335555555544322 111122333
Q ss_pred cCCCCCCCceEEEeecCCCCCC-----cccccccccccEEEEeCCCCCCC----CC-CCCCCCCcceeeccccccceEeC
Q 002044 768 ALQPPPNLESLQITGFKGRTLM-----LSWIVSLNKLKKLRLLFCDKCEV----MP-ALGILPSLEVLKIRFMKSVKRVG 837 (976)
Q Consensus 768 ~l~~~~~L~~L~L~~~~~~~~~-----p~~~~~l~~L~~L~L~~~~~~~~----l~-~l~~L~~L~~L~L~~~~~l~~~~ 837 (976)
.+..+++|+.|++++|.+.... +.+...+++|++|+|++|..... ++ .+..+++|++|+|++|. +...+
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~ 300 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEG 300 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHH
T ss_pred HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHH
Confidence 3334455555555555432210 11111345555555555532211 11 13335555555555543 21111
Q ss_pred ccccCCCcCcccccccCCCCCCCCCccCccCCccceeeecccccccccc--cCCCccccCCCcceEeeecCCCCCCC-C-
Q 002044 838 NEFLGTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWD--FGKEDITIMPQLSSMKISYCSKLNSL-P- 913 (976)
Q Consensus 838 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~--~~~~~~~~l~~L~~L~l~~c~~L~~l-p- 913 (976)
...+... .....++|+.|.+.++. +.... ..+..+..+++|++|++++|. +... +
T Consensus 301 ~~~l~~~-------------------l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~ 359 (461)
T 1z7x_W 301 ARLLCET-------------------LLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVR 359 (461)
T ss_dssp HHHHHHH-------------------HTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHH
T ss_pred HHHHHHH-------------------hccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc-cccccHH
Confidence 0000000 00123689999988764 22111 112224567999999999985 5432 1
Q ss_pred ---cCCCC-CCCCCeEEEccCcchHHhhccCCCCCcccccCCCceeecccccccC
Q 002044 914 ---DQLLQ-STTLEELEIIRCPILEERFKKDTGEDWSKITHIPKIKIHGEYVQGS 964 (976)
Q Consensus 914 ---~~l~~-l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~n~~~~~ 964 (976)
..+.. .++|+.|++++|. +...-....+..+...+++.++++++|.+.+.
T Consensus 360 ~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 360 ELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 22222 5799999999993 22100001122334568899999999988754
No 67
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.59 E-value=1.4e-15 Score=168.65 Aligned_cols=258 Identities=19% Similarity=0.174 Sum_probs=164.3
Q ss_pred cCCCCCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccC-ccccCCCccceecC
Q 002044 538 GYKNSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIP-KGIKKLRHLRYLKL 616 (976)
Q Consensus 538 ~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp-~~i~~L~~Lr~L~L 616 (976)
+....+|..+. ++|++|++++|.+..... ..+.++++|++|+++ ++.+..++ ..++++++|++|++
T Consensus 41 ~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~-----~~~~~l~~L~~L~L~------~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 41 GSLNSIPSGLT--EAVKSLDLSNNRITYISN-----SDLQRCVNLQALVLT------SNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp TTCSSCCTTCC--TTCCEEECTTSCCCEECT-----TTTTTCTTCCEEECT------TSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccccccccc--ccCcEEECCCCcCcccCH-----HHhccCCCCCEEECC------CCccCccCHhhcCCCCCCCEEEC
Confidence 34444554433 578888888887654322 126778888888888 55555553 56788888888888
Q ss_pred --ccccccCcc-ccccCCccEEecCCCCCCcccch--hhcccCCCcEEEeccc-ccccCc-ccccCCCCCCcCCceEEec
Q 002044 617 --YLVEKLPET-CCELLNLQTLNMCGSPGLKRLPQ--GIGKLINLRHLMFEVD-YLEYMP-KGIERLTSLRTLSEFVVVN 689 (976)
Q Consensus 617 --~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~--~i~~l~~L~~L~l~~~-~l~~lp-~~i~~l~~L~~L~~~~~~~ 689 (976)
+.+..+|.. ++++++|++|++++|. +..+|. .+..+++|++|++++| .+..++ ..++.+++|+.|++..+.
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~- 185 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD- 185 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-
Confidence 567777765 7788888888888886 777776 5778888888888665 466654 457777888877655433
Q ss_pred CCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhHHHHhhcC
Q 002044 690 GSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHEAVCEAL 769 (976)
Q Consensus 690 ~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l 769 (976)
..+..+..... ++.|+ .+.+.+.. +...... .+..+++|+.|+++++........ .....
T Consensus 186 l~~~~~~~l~~---l~~L~----~L~l~~n~-l~~~~~~---~~~~~~~L~~L~L~~n~l~~~~~~---------~l~~~ 245 (353)
T 2z80_A 186 LQSYEPKSLKS---IQNVS----HLILHMKQ-HILLLEI---FVDVTSSVECLELRDTDLDTFHFS---------ELSTG 245 (353)
T ss_dssp CCEECTTTTTT---CSEEE----EEEEECSC-STTHHHH---HHHHTTTEEEEEEESCBCTTCCCC--------------
T ss_pred cCccCHHHHhc---cccCC----eecCCCCc-cccchhh---hhhhcccccEEECCCCcccccccc---------ccccc
Confidence 22222222222 22222 33333221 2222221 233467899999998764421100 01122
Q ss_pred CCCCCCceEEEeecCCCC----CCcccccccccccEEEEeCCCCCCCCCC--CCCCCCcceeeccccc
Q 002044 770 QPPPNLESLQITGFKGRT----LMLSWIVSLNKLKKLRLLFCDKCEVMPA--LGILPSLEVLKIRFMK 831 (976)
Q Consensus 770 ~~~~~L~~L~L~~~~~~~----~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~L~~L~~L~L~~~~ 831 (976)
...+.++.+++.++.... .+|.++..+++|+.|+|++|... .+|. ++.+++|++|+|++|+
T Consensus 246 ~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp -CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCC
Confidence 345678888888876554 13677888999999999999654 5554 5889999999999987
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.57 E-value=2.5e-17 Score=197.00 Aligned_cols=373 Identities=13% Similarity=0.056 Sum_probs=199.4
Q ss_pred cCceeEEEEEccCCCCC-ccccc-ccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCcc
Q 002044 527 QEKLRHLMLVLGYKNSF-PVSIF-YARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKG 604 (976)
Q Consensus 527 ~~~~r~l~~~~~~~~~~-~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~ 604 (976)
..+++++.+..+..... +..+. .+++|++|.+.+|... ....++.++.++++|++|+|++|. +++.....++..
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~---~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~ 179 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF---STDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHF 179 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE---EHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGS
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC---CHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHH
Confidence 34678888887654421 22332 5789999999988421 122245557789999999999775 444444445555
Q ss_pred ccCCCccceecCcccc-cc-----CccccccCCccEEecCCCCCCcccchhhcccCCCcEEEecc-------cccccCcc
Q 002044 605 IKKLRHLRYLKLYLVE-KL-----PETCCELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEV-------DYLEYMPK 671 (976)
Q Consensus 605 i~~L~~Lr~L~L~~~~-~l-----p~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~-------~~l~~lp~ 671 (976)
...+++|++|+++... .+ +.-+.++++|++|++++|..+..+|..+.++++|++|+++. +.+..++.
T Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence 5678899999994432 23 22345679999999999976778888899999999999633 33445666
Q ss_pred cccCCCCCCcCCceEEecCCCCCCCcccccccc-cccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCC
Q 002044 672 GIERLTSLRTLSEFVVVNGSGKYGSKACNLEGL-RYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEA 750 (976)
Q Consensus 672 ~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L-~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 750 (976)
.++++++|+.|..+... . ...+..+ ..+.+|+ .+.+..+. +. .......+..+++|+.|.+..+. .
T Consensus 260 ~l~~~~~L~~Ls~~~~~-~-------~~~l~~~~~~~~~L~-~L~L~~~~-l~--~~~l~~~~~~~~~L~~L~l~~~~-~ 326 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDA-V-------PAYLPAVYSVCSRLT-TLNLSYAT-VQ--SYDLVKLLCQCPKLQRLWVLDYI-E 326 (594)
T ss_dssp HHHTCTTCCEEECCBTC-C-------GGGGGGGHHHHTTCC-EEECTTCC-CC--HHHHHHHHTTCTTCCEEEEEGGG-H
T ss_pred HHhcCCCcccccCCccc-c-------hhhHHHHHHhhCCCC-EEEccCCC-CC--HHHHHHHHhcCCCcCEEeCcCcc-C
Confidence 67788888877211100 0 1111110 1122222 44444433 22 22233345567788888887651 0
Q ss_pred CCCCCccchhhHHHHhhcCCCCCCCceEEEeec--------CCCC-CC-cccccccccccEEEEeCCCCCCC--CCCCC-
Q 002044 751 PVGMKDENEANHEAVCEALQPPPNLESLQITGF--------KGRT-LM-LSWIVSLNKLKKLRLLFCDKCEV--MPALG- 817 (976)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~--------~~~~-~~-p~~~~~l~~L~~L~L~~~~~~~~--l~~l~- 817 (976)
...+......+++|+.|+|.++ .... .. ......+++|+.|.+..+. ... +..+.
T Consensus 327 -----------~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~-l~~~~~~~l~~ 394 (594)
T 2p1m_B 327 -----------DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQ-MTNAALITIAR 394 (594)
T ss_dssp -----------HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESC-CCHHHHHHHHH
T ss_pred -----------HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCC-cCHHHHHHHHh
Confidence 1112112223567777777442 1111 00 0111236777777554432 221 11222
Q ss_pred CCCCcceeecc-----ccccceEeCcc------ccCCCcCcccccccCCCCCCCCCccCccCCccceeeecccccccccc
Q 002044 818 ILPSLEVLKIR-----FMKSVKRVGNE------FLGTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWD 886 (976)
Q Consensus 818 ~L~~L~~L~L~-----~~~~l~~~~~~------~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~ 886 (976)
.+|+|+.|+|+ +|..++..+.. +.....+..+++.+ .+...........+++|+.|.+.++. +....
T Consensus 395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~ 472 (594)
T 2p1m_B 395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLG 472 (594)
T ss_dssp HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHH
T ss_pred hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCC-CcHHH
Confidence 46777777777 34444322110 11112233333322 11100000000125667777776643 11111
Q ss_pred cCCCccccCCCcceEeeecCCCCCC--CCcCCCCCCCCCeEEEccCcc
Q 002044 887 FGKEDITIMPQLSSMKISYCSKLNS--LPDQLLQSTTLEELEIIRCPI 932 (976)
Q Consensus 887 ~~~~~~~~l~~L~~L~l~~c~~L~~--lp~~l~~l~~L~~L~l~~c~~ 932 (976)
. ......+|+|++|+|++|+. .. ++..+..+++|+.|++++|+.
T Consensus 473 ~-~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 473 M-HHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp H-HHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred H-HHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 0 00013467888888888774 32 122344567888888888865
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.57 E-value=2.1e-15 Score=161.87 Aligned_cols=122 Identities=22% Similarity=0.289 Sum_probs=78.2
Q ss_pred cCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCccc-CccccCCCccceecC--cc-cccc-Cc
Q 002044 550 ARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEI-PKGIKKLRHLRYLKL--YL-VEKL-PE 624 (976)
Q Consensus 550 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~l-p~~i~~L~~Lr~L~L--~~-~~~l-p~ 624 (976)
.++|+.|++++|.+..... ..|.++++|++|+++ ++.+..+ |..+..+++|++|++ +. +..+ |.
T Consensus 31 ~~~l~~L~l~~n~i~~~~~-----~~~~~~~~L~~L~l~------~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~ 99 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPA-----ASFRACRNLTILWLH------SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA 99 (285)
T ss_dssp CTTCSEEECTTSCCCEECT-----TTTTTCTTCCEEECC------SSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred CCCceEEEeeCCcCCccCH-----HHcccCCCCCEEECC------CCccceeCHhhcCCccCCCEEeCCCCCCccccCHH
Confidence 4577777777776544322 226677777777777 4445555 556777777777777 32 5555 45
Q ss_pred cccccCCccEEecCCCCCCccc-chhhcccCCCcEEEecccccccCccc-ccCCCCCCcCC
Q 002044 625 TCCELLNLQTLNMCGSPGLKRL-PQGIGKLINLRHLMFEVDYLEYMPKG-IERLTSLRTLS 683 (976)
Q Consensus 625 ~i~~L~~L~~L~l~~~~~l~~l-p~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~ 683 (976)
.+..+++|++|++++|. +..+ |..+..+++|++|++++|.+..+|.. ++.+++|+.|+
T Consensus 100 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp TTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred HhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence 67777777777777776 4444 45567777777777777766666543 55555555553
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.56 E-value=3.5e-15 Score=172.35 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=33.2
Q ss_pred CCCCceEEEeecCCCCCCccccc-ccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccc
Q 002044 772 PPNLESLQITGFKGRTLMLSWIV-SLNKLKKLRLLFCDKCEVMPALGILPSLEVLKIRFMK 831 (976)
Q Consensus 772 ~~~L~~L~L~~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~ 831 (976)
+++|+.|++++|.+....|.++. .+++|+.|+|++|. +..++....+++|++|+|++|.
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~Ls~N~ 202 (487)
T 3oja_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNK 202 (487)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccccccCCCCCEEECCCCC
Confidence 44566666666655554344443 56666666666664 2333444456666666666654
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.55 E-value=1.7e-16 Score=173.00 Aligned_cols=102 Identities=16% Similarity=0.206 Sum_probs=67.4
Q ss_pred ceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccC-ccccCCCccceecC--ccccccCccccc
Q 002044 552 KLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIP-KGIKKLRHLRYLKL--YLVEKLPETCCE 628 (976)
Q Consensus 552 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp-~~i~~L~~Lr~L~L--~~~~~lp~~i~~ 628 (976)
.+..++++.+.+ ...+..++..+++|++|+|+ ++.+..++ ..++++++|++|+| +.+..+++ +..
T Consensus 11 ~l~i~~ls~~~l-----~~~~~~~~~~~~~L~~L~L~------~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~ 78 (317)
T 3o53_A 11 RYKIEKVTDSSL-----KQALASLRQSAWNVKELDLS------GNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LES 78 (317)
T ss_dssp EEEEESCCTTTH-----HHHHHHHHTTGGGCSEEECT------TSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETT
T ss_pred ceeEeeccccch-----hhhHHHHhccCCCCCEEECc------CCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhh
Confidence 355555555543 33355567778889999998 55565554 56777888888888 44555554 777
Q ss_pred cCCccEEecCCCCCCcccchhhcccCCCcEEEecccccccCc
Q 002044 629 LLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLEYMP 670 (976)
Q Consensus 629 L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lp 670 (976)
+++|++|++++|. +..+| ..++|++|+++.|.+..++
T Consensus 79 l~~L~~L~Ls~n~-l~~l~----~~~~L~~L~l~~n~l~~~~ 115 (317)
T 3o53_A 79 LSTLRTLDLNNNY-VQELL----VGPSIETLHAANNNISRVS 115 (317)
T ss_dssp CTTCCEEECCSSE-EEEEE----ECTTCCEEECCSSCCSEEE
T ss_pred cCCCCEEECcCCc-ccccc----CCCCcCEEECCCCccCCcC
Confidence 7778888887776 65554 3467777777766666554
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.55 E-value=1.4e-15 Score=165.85 Aligned_cols=215 Identities=17% Similarity=0.134 Sum_probs=152.5
Q ss_pred cccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccccCcc
Q 002044 548 FYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLPET 625 (976)
Q Consensus 548 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp~~ 625 (976)
..+++|++|++++|.+.... +..|.++++|++|+|+ ++.+..++. +..+++|++|++ +.+..+|
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~Ls------~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~-- 96 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQIS-----AADLAPFTKLELLNLS------SNVLYETLD-LESLSTLRTLDLNNNYVQELL-- 96 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCC-----HHHHTTCTTCCEEECT------TSCCEEEEE-ETTCTTCCEEECCSSEEEEEE--
T ss_pred ccCCCCCEEECcCCccCcCC-----HHHhhCCCcCCEEECC------CCcCCcchh-hhhcCCCCEEECcCCcccccc--
Confidence 45679999999999876543 3348999999999999 555655554 899999999999 5566665
Q ss_pred ccccCCccEEecCCCCCCcccchhhcccCCCcEEEecccccccCcc-cccCCCCCCcCCceEEecCCCCCCCcccccccc
Q 002044 626 CCELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLEYMPK-GIERLTSLRTLSEFVVVNGSGKYGSKACNLEGL 704 (976)
Q Consensus 626 i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L 704 (976)
..++|++|++++|. +..+|.. .+++|++|++++|.+..++. .++.+++|+.|++..+. +.
T Consensus 97 --~~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~------------l~-- 157 (317)
T 3o53_A 97 --VGPSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE------------ID-- 157 (317)
T ss_dssp --ECTTCCEEECCSSC-CSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC------------CC--
T ss_pred --CCCCcCEEECCCCc-cCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC------------CC--
Confidence 34899999999998 7777653 47899999999999888764 56777888777532211 00
Q ss_pred cccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEeecC
Q 002044 705 RYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITGFK 784 (976)
Q Consensus 705 ~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 784 (976)
.+.. ......+++|+.|+++++.... ......+++|+.|++++|.
T Consensus 158 --------~~~~-------------~~~~~~l~~L~~L~L~~N~l~~--------------~~~~~~l~~L~~L~Ls~N~ 202 (317)
T 3o53_A 158 --------TVNF-------------AELAASSDTLEHLNLQYNFIYD--------------VKGQVVFAKLKTLDLSSNK 202 (317)
T ss_dssp --------EEEG-------------GGGGGGTTTCCEEECTTSCCCE--------------EECCCCCTTCCEEECCSSC
T ss_pred --------cccH-------------HHHhhccCcCCEEECCCCcCcc--------------cccccccccCCEEECCCCc
Confidence 0000 0011234567777777664320 0223346788888888888
Q ss_pred CCCCCcccccccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccc
Q 002044 785 GRTLMLSWIVSLNKLKKLRLLFCDKCEVMPALGILPSLEVLKIRFMK 831 (976)
Q Consensus 785 ~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~ 831 (976)
+..+ |..+..+++|+.|+|++|......+.+..+++|+.|++++|+
T Consensus 203 l~~l-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 203 LAFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp CCEE-CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred CCcc-hhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCC
Confidence 8776 666778888888888888644333347788888888888876
No 73
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.55 E-value=6e-14 Score=150.36 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=33.6
Q ss_pred ccccCCCcceEeeecCCCCCCCC-cCCCCCCCCCeEEEccCcc
Q 002044 891 DITIMPQLSSMKISYCSKLNSLP-DQLLQSTTLEELEIIRCPI 932 (976)
Q Consensus 891 ~~~~l~~L~~L~l~~c~~L~~lp-~~l~~l~~L~~L~l~~c~~ 932 (976)
.+..+++|+.|++++|. +..+| ..+..+++|+.|++++||-
T Consensus 196 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 196 AFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred HccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCCc
Confidence 35578899999999986 67776 4578899999999999954
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.54 E-value=1.5e-15 Score=165.08 Aligned_cols=62 Identities=18% Similarity=0.174 Sum_probs=38.3
Q ss_pred CCCCCCceEEEeecCCCCC--Cc-ccccccccccEEEEeCCCCCCCC--CCCCCCCCcceeeccccc
Q 002044 770 QPPPNLESLQITGFKGRTL--ML-SWIVSLNKLKKLRLLFCDKCEVM--PALGILPSLEVLKIRFMK 831 (976)
Q Consensus 770 ~~~~~L~~L~L~~~~~~~~--~p-~~~~~l~~L~~L~L~~~~~~~~l--~~l~~L~~L~~L~L~~~~ 831 (976)
..+++|+.|++++|.+..+ .+ ..+..+++|+.|+|++|...... +.+..+++|++|+|++|.
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 4566777777777766533 01 12235677788888777644433 345566777777777764
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.52 E-value=9.5e-16 Score=166.65 Aligned_cols=199 Identities=17% Similarity=0.127 Sum_probs=119.4
Q ss_pred cCCCcceEEecCcccccCCCCc-ccCccc--cCCCccceecC--ccccccCcccccc-----CCccEEecCCCCCCcccc
Q 002044 578 QLTGLRVLRIEGMKSLIGSGTN-EIPKGI--KKLRHLRYLKL--YLVEKLPETCCEL-----LNLQTLNMCGSPGLKRLP 647 (976)
Q Consensus 578 ~l~~Lr~L~L~~~~~l~~~~~~-~lp~~i--~~L~~Lr~L~L--~~~~~lp~~i~~L-----~~L~~L~l~~~~~l~~lp 647 (976)
++++|++|+|+ ++.+. .+|..+ +.+++|++|+| +.+..+|..++.+ ++|++|++++|. +..+|
T Consensus 93 ~l~~L~~L~L~------~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~ 165 (312)
T 1wwl_A 93 GISGLQELTLE------NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFS 165 (312)
T ss_dssp TTSCCCEEEEE------EEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCC
T ss_pred CcCCccEEEcc------CCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-Cccch
Confidence 56666666666 33333 345544 66666666666 4555556555555 666666666665 44444
Q ss_pred -hhhcccCCCcEEEeccccccc---Ccccc--cCCCCCCcCCceEEecCCCCCCCcccccccccccccCCCceEEcCcCC
Q 002044 648 -QGIGKLINLRHLMFEVDYLEY---MPKGI--ERLTSLRTLSEFVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGN 721 (976)
Q Consensus 648 -~~i~~l~~L~~L~l~~~~l~~---lp~~i--~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~ 721 (976)
..++.+++|++|++++|.+.. +|..+ +.+++|+.|++..+ .
T Consensus 166 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N---------------------------------~ 212 (312)
T 1wwl_A 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA---------------------------------G 212 (312)
T ss_dssp TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS---------------------------------C
T ss_pred HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC---------------------------------c
Confidence 556666666666665555332 23333 45555555532111 1
Q ss_pred CCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEeecCCCCCCcccccccccccE
Q 002044 722 VTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKK 801 (976)
Q Consensus 722 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~ 801 (976)
+..........+..+++|+.|+++++...... ....+..+++|+.|++++|.+..+ |.++. ++|+.
T Consensus 213 l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----------~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~--~~L~~ 278 (312)
T 1wwl_A 213 METPSGVCSALAAARVQLQGLDLSHNSLRDAA-----------GAPSCDWPSQLNSLNLSFTGLKQV-PKGLP--AKLSV 278 (312)
T ss_dssp CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC-----------CCSCCCCCTTCCEEECTTSCCSSC-CSSCC--SEEEE
T ss_pred CcchHHHHHHHHhcCCCCCEEECCCCcCCccc-----------chhhhhhcCCCCEEECCCCccChh-hhhcc--CCceE
Confidence 11111122222345678888888877543110 012234467899999999988866 77765 89999
Q ss_pred EEEeCCCCCCCCCCCCCCCCcceeeccccc
Q 002044 802 LRLLFCDKCEVMPALGILPSLEVLKIRFMK 831 (976)
Q Consensus 802 L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~ 831 (976)
|+|++|.. ..+|.+..+++|++|+|++|+
T Consensus 279 L~Ls~N~l-~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 279 LDLSYNRL-DRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp EECCSSCC-CSCCCTTTSCEEEEEECTTCT
T ss_pred EECCCCCC-CCChhHhhCCCCCEEeccCCC
Confidence 99999854 444778899999999998876
No 76
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.51 E-value=5e-13 Score=147.98 Aligned_cols=283 Identities=13% Similarity=0.085 Sum_probs=163.9
Q ss_pred ccCCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHH----------
Q 002044 171 IDLSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCES---------- 240 (976)
Q Consensus 171 ~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~---------- 240 (976)
.....|+||+++++++.+++.. + +++.|+|++|+|||||++++++.. . .+|+.+.
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~-------~-~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~ 73 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLEN-------Y-PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHIT 73 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHH-------C-SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBC
T ss_pred CChHhcCChHHHHHHHHHHHhc-------C-CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCC
Confidence 3446799999999999998863 1 589999999999999999998742 1 4455431
Q ss_pred ---HHHHHh----C----------------CCC--CcccHHHHHHHHHHHHcC-CceEEEEcCCCCCCc-------cCcH
Q 002044 241 ---IIEALE----G----------------FAP--NLGELNSLLLRIDAFIAR-KKFLLILDDVWTDDY-------SKWE 287 (976)
Q Consensus 241 ---~~~~l~----~----------------~~~--~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~-------~~~~ 287 (976)
++..+. . ... ......+....+.+.... ++++||+||++.-+. ..+.
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~ 153 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLA 153 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHH
Confidence 111111 0 000 012345555556555543 499999999965321 1122
Q ss_pred hHHHhhcCCCCCcEEEEEcCchhh-hhc----------cCC-cceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHH
Q 002044 288 PFRRCLINGHRESRILVTTRKETV-ARM----------MES-TDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIG 355 (976)
Q Consensus 288 ~l~~~l~~~~~gs~iivTtR~~~v-~~~----------~~~-~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~ 355 (976)
.+...+. ..++.++|+|++...+ ... .+. ...+.+.+|+.+|+.+++.......+. ... .+.+
T Consensus 154 ~L~~~~~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~-~~~---~~~~ 228 (350)
T 2qen_A 154 LFAYAYD-SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL-DVP---ENEI 228 (350)
T ss_dssp HHHHHHH-HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC-CCC---HHHH
T ss_pred HHHHHHH-hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC-CCC---HHHH
Confidence 2322222 2246789999887543 211 111 247999999999999999875421111 111 3456
Q ss_pred HHHHhhcCCCchHHHHHhhhhccCCCHHHHHHHHhhhhhhhhhhhhhhhHHH-HhhhcCCcHHHHHHHhhhcccCCCcee
Q 002044 356 KKIVGKCKGLPLAAKTIGSLLRFKRTREEWQSILDSEIWQLEEFEKGLLAPL-LLSYNDLPTIIKQCFLYCAVFPKDCFL 434 (976)
Q Consensus 356 ~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~l-~~sy~~L~~~~k~cfl~~~~fp~~~~i 434 (976)
.+|++.|+|+|+++..++..+....+...+..-.. ......+...+ .+.++ ++..+..+..+|. + .+
T Consensus 229 ~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~l~~~--~~~~~~~l~~la~---g-~~ 296 (350)
T 2qen_A 229 EEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTL------EVAKGLIMGELEELRRR--SPRYVDILRAIAL---G-YN 296 (350)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHH------HHHHHHHHHHHHHHHHH--CHHHHHHHHHHHT---T-CC
T ss_pred HHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHH------HHHHHHHHHHHHHHHhC--ChhHHHHHHHHHh---C-CC
Confidence 78999999999999998876432222222211110 00000111111 12222 6788889988887 2 23
Q ss_pred ChHHHHHHHHHcCcccccCCchhhHHHHHHHHHHHHHhcCCccccccCCCCcEeEEEe-chhHHHHH
Q 002044 435 ERDELIKLWMAQGYIVQKGNKEMEMEMIGEGYFDYLATRSFFQEFEKDEAGIVRRCKM-HDIVHDFA 500 (976)
Q Consensus 435 ~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~~L~~r~ll~~~~~~~~~~~~~~~m-Hdlv~~l~ 500 (976)
+...+.....+. .- +.. ......+++.|.+.+++.... + .|.+ |++++++.
T Consensus 297 ~~~~l~~~~~~~-~~----~~~---~~~~~~~l~~L~~~gli~~~~----~---~y~~~~p~~~~~~ 348 (350)
T 2qen_A 297 RWSLIRDYLAVK-GT----KIP---EPRLYALLENLKKMNWIVEED----N---TYKIADPVVATVL 348 (350)
T ss_dssp SHHHHHHHHHHT-TC----CCC---HHHHHHHHHHHHHTTSEEEET----T---EEEESSHHHHHHH
T ss_pred CHHHHHHHHHHH-hC----CCC---HHHHHHHHHHHHhCCCEEecC----C---EEEEecHHHHHHH
Confidence 444444433221 10 001 344667899999999997542 1 2444 66776654
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.51 E-value=3.5e-14 Score=153.70 Aligned_cols=65 Identities=15% Similarity=0.126 Sum_probs=48.4
Q ss_pred CCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceEeC
Q 002044 769 LQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMPALGILPSLEVLKIRFMKSVKRVG 837 (976)
Q Consensus 769 l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~ 837 (976)
+..+++|+.|++++|.+..+ +. +..+++|+.|+|++|.. ..++.+..+++|+.|++++|+ +...+
T Consensus 169 l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l-~~~~~l~~l~~L~~L~l~~N~-i~~~~ 233 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNNQI-SDVSPLANTSNLFIVTLTNQT-ITNQP 233 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTSCC-CBCGGGTTCTTCCEEEEEEEE-EECCC
T ss_pred hcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEccCCcc-CccccccCCCCCCEEEccCCe-eecCC
Confidence 45567888888888887766 43 67888999999998854 445568889999999998886 44333
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.49 E-value=1.7e-13 Score=142.50 Aligned_cols=38 Identities=21% Similarity=0.155 Sum_probs=25.5
Q ss_pred cccC-CCcceEeeecCCCCCCCCcCCCCCCCCCeEEEccCcc
Q 002044 892 ITIM-PQLSSMKISYCSKLNSLPDQLLQSTTLEELEIIRCPI 932 (976)
Q Consensus 892 ~~~l-~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~ 932 (976)
+..+ ++|+.|++++|. ++.+|.. .+++|+.|++.+++.
T Consensus 200 ~~~l~~~L~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 200 FGGVYSGPSLLDVSQTS-VTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp TTTCSBCCSEEECTTCC-CCCCCCT--TCTTCSEEECTTC--
T ss_pred hhccccCCcEEECCCCc-cccCChh--HhccCceeeccCccC
Confidence 3455 777888888765 6777754 467888888877754
No 79
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.49 E-value=2e-13 Score=154.93 Aligned_cols=289 Identities=14% Similarity=0.042 Sum_probs=163.0
Q ss_pred CCccccchhHHHHHHHHH-hcccccCCCCeEEEEE--EecCCchHHHHHHHHhcccchhcc-----cc-cceeehH----
Q 002044 173 LSEVRGRVEEKNALKSKL-LCKSSEQTNAVQIISL--VGMGGIGKTTLAQFAYNDEDVISN-----FE-KRMWNCE---- 239 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L-~~~~~~~~~~~~vv~I--~G~gGiGKTtLa~~v~~~~~~~~~-----f~-~~~wv~~---- 239 (976)
+..++||+.+++++.+++ .....+.....+.+.| +|++|+||||||+.+++. .... |. .++|+.+
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 98 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYVNAFNAP 98 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEEEGGGCC
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEEECCCCC
Confidence 367999999999999988 4321100013455666 999999999999999984 3221 12 2456653
Q ss_pred -------HHHHHHhCCCC-CcccHHHHHHHHHHHHc--CCceEEEEcCCCCCC------ccCcHhHHHhhcCC---C--C
Q 002044 240 -------SIIEALEGFAP-NLGELNSLLLRIDAFIA--RKKFLLILDDVWTDD------YSKWEPFRRCLING---H--R 298 (976)
Q Consensus 240 -------~~~~~l~~~~~-~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~~~l~~~l~~~---~--~ 298 (976)
.++..+..... ...+.......+.+.+. +++++|||||+|.-+ ...+..+...+... + .
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 178 (412)
T 1w5s_A 99 NLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVN 178 (412)
T ss_dssp SHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCC
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCc
Confidence 33344432211 12234455666666665 679999999996522 12233333333221 2 3
Q ss_pred CcEEEEEcCchhhhhcc--------CC-cceEecCCCCHHHHHHHHHHHhcCC-CCCCcchhHHHHHHHHHhhcC-----
Q 002044 299 ESRILVTTRKETVARMM--------ES-TDVIFIKELSEQECWALFKRFACFG-RSLSECEQLEEIGKKIVGKCK----- 363 (976)
Q Consensus 299 gs~iivTtR~~~v~~~~--------~~-~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~~~~i~~~c~----- 363 (976)
...||+||+...+...+ .. ...+.+.+++.++.+++|...+... .....+ .+....|++.|+
T Consensus 179 ~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~ 255 (412)
T 1w5s_A 179 RIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWE---PRHLELISDVYGEDKGG 255 (412)
T ss_dssp BEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHHHCGGGTS
T ss_pred eEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHhccC
Confidence 44588888765432111 11 2239999999999999997653210 111111 345667888888
Q ss_pred -CCchHHHHHhhhh---c--cC---CCHHHHHHHHhhhhhhhhhhhhhh-hHHHHhhhcCCcHHHHHHHhhhcccC--CC
Q 002044 364 -GLPLAAKTIGSLL---R--FK---RTREEWQSILDSEIWQLEEFEKGL-LAPLLLSYNDLPTIIKQCFLYCAVFP--KD 431 (976)
Q Consensus 364 -GlPLai~~~~~~l---~--~~---~~~~~w~~~l~~~~~~~~~~~~~~-~~~l~~sy~~L~~~~k~cfl~~~~fp--~~ 431 (976)
|.|..+..+.... . .. -+.+.+..+... .. ...+.-++..||++.+.++..++.+. .+
T Consensus 256 ~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~----------~~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~ 325 (412)
T 1w5s_A 256 DGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE----------NEAASIQTHELEALSIHELIILRLIAEATLGGM 325 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH----------C------CCSSSSSCHHHHHHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH----------HhccchHHHHHHcCCHHHHHHHHHHHHHHhcCC
Confidence 9997655554321 1 01 122333222221 01 23344567889999999999888754 22
Q ss_pred ceeChHHHHHHHHHcC--cccccCCchhhHHHHHHHHHHHHHhcCCccccc
Q 002044 432 CFLERDELIKLWMAQG--YIVQKGNKEMEMEMIGEGYFDYLATRSFFQEFE 480 (976)
Q Consensus 432 ~~i~~~~li~~w~a~g--~i~~~~~~~~~~~~~~~~~~~~L~~r~ll~~~~ 480 (976)
..++...+...+..-. ..... ... ......+++.|.+.+++....
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 326 EWINAGLLRQRYEDASLTMYNVK-PRG---YTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp SSBCHHHHHHHHHHHHHHHSCCC-CCC---HHHHHHHHHHHHHTTSEEEEC
T ss_pred CCccHHHHHHHHHHHHHhhcCCC-CCC---HHHHHHHHHHHHhCCCEEeec
Confidence 3455555554442210 00000 001 334567899999999997654
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.48 E-value=4.8e-14 Score=162.77 Aligned_cols=212 Identities=18% Similarity=0.130 Sum_probs=142.1
Q ss_pred cCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccccCcccc
Q 002044 550 ARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLPETCC 627 (976)
Q Consensus 550 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp~~i~ 627 (976)
+++|++|++++|.+....+ ..|..+++|++|+|+ ++.+..++. ++.+++|++|+| +.+..+|.
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~Ls------~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~--- 97 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISA-----ADLAPFTKLELLNLS------SNVLYETLD-LESLSTLRTLDLNNNYVQELLV--- 97 (487)
T ss_dssp GGGCCEEECCSSCCCCCCG-----GGGTTCTTCCEEECT------TSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE---
T ss_pred CCCccEEEeeCCcCCCCCH-----HHHhCCCCCCEEEee------CCCCCCCcc-cccCCCCCEEEecCCcCCCCCC---
Confidence 4478888888877654322 226778888888888 444544443 777888888888 45555553
Q ss_pred ccCCccEEecCCCCCCcccchhhcccCCCcEEEecccccccCc-ccccCCCCCCcCCceEEecCCCCCCCcccccccccc
Q 002044 628 ELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLEYMP-KGIERLTSLRTLSEFVVVNGSGKYGSKACNLEGLRY 706 (976)
Q Consensus 628 ~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~ 706 (976)
.++|++|++++|. +..+|. ..+++|++|++++|.+..++ ..++.+++|+.|++..+. ..+
T Consensus 98 -~~~L~~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~-------------- 158 (487)
T 3oja_A 98 -GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDT-------------- 158 (487)
T ss_dssp -CTTCCEEECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCE--------------
T ss_pred -CCCcCEEECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCC--------------
Confidence 3778888888876 666554 24677888888777777663 456667777766532211 000
Q ss_pred cccCCCceEEcCcCCCCChhhHHhccC-CCCCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEeecCC
Q 002044 707 LNHLRGSLKIRGLGNVTDIDEAKSAHL-DKKKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITGFKG 785 (976)
Q Consensus 707 L~~L~~~l~i~~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 785 (976)
. ....+ ..+++|+.|++++|.... ......+++|+.|+|++|.+
T Consensus 159 -------~--------------~~~~l~~~l~~L~~L~Ls~N~l~~--------------~~~~~~l~~L~~L~Ls~N~l 203 (487)
T 3oja_A 159 -------V--------------NFAELAASSDTLEHLNLQYNFIYD--------------VKGQVVFAKLKTLDLSSNKL 203 (487)
T ss_dssp -------E--------------EGGGGGGGTTTCCEEECTTSCCCE--------------EECCCCCTTCCEEECCSSCC
T ss_pred -------c--------------ChHHHhhhCCcccEEecCCCcccc--------------ccccccCCCCCEEECCCCCC
Confidence 0 00111 245678888887765330 12334578999999999998
Q ss_pred CCCCcccccccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccc
Q 002044 786 RTLMLSWIVSLNKLKKLRLLFCDKCEVMPALGILPSLEVLKIRFMK 831 (976)
Q Consensus 786 ~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~ 831 (976)
..+ |..+..+++|+.|+|++|......+.++.+++|+.|++++|+
T Consensus 204 ~~~-~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 204 AFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp CEE-CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred CCC-CHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCC
Confidence 877 666888999999999999755444458889999999999887
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.47 E-value=3.6e-13 Score=144.20 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=26.7
Q ss_pred cCCCcceEeeecCCCCCCCCcCCCCCCCCCeEEEccCc
Q 002044 894 IMPQLSSMKISYCSKLNSLPDQLLQSTTLEELEIIRCP 931 (976)
Q Consensus 894 ~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~ 931 (976)
.+++|+.|++++|. ++.+|..+...++|+.|++++||
T Consensus 170 ~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 170 GLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred CcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCCC
Confidence 56677777777765 66777777777777777777665
No 82
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.46 E-value=1.4e-12 Score=144.90 Aligned_cols=280 Identities=11% Similarity=0.062 Sum_probs=160.0
Q ss_pred cCCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH------------
Q 002044 172 DLSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE------------ 239 (976)
Q Consensus 172 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~------------ 239 (976)
....|+||+++++.+.+ +. . +++.|+|++|+|||||++++++. .... .+|+.+
T Consensus 11 ~~~~~~gR~~el~~L~~-l~------~---~~v~i~G~~G~GKT~L~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR------A---PITLVLGLRRTGKSSIIKIGINE--LNLP---YIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC------S---SEEEEEESTTSSHHHHHHHHHHH--HTCC---EEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hc------C---CcEEEECCCCCCHHHHHHHHHHh--cCCC---EEEEEchhhccccCCCHH
Confidence 44679999999999999 64 2 59999999999999999999874 2211 233321
Q ss_pred ----HHHHHHh-------------CCC-----C-----------CcccHHHHHHHHHHHHcCCceEEEEcCCCCCC---c
Q 002044 240 ----SIIEALE-------------GFA-----P-----------NLGELNSLLLRIDAFIARKKFLLILDDVWTDD---Y 283 (976)
Q Consensus 240 ----~~~~~l~-------------~~~-----~-----------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~ 283 (976)
.+.+.+. ... . .......+...+.+.-. ++++|||||++.-+ .
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 1111110 000 0 01223333333333212 49999999996532 1
Q ss_pred cCcHhHHHhhcCCCCCcEEEEEcCchhhhh-c---------c-CC-cceEecCCCCHHHHHHHHHHHhcCCCCCCcchhH
Q 002044 284 SKWEPFRRCLINGHRESRILVTTRKETVAR-M---------M-ES-TDVIFIKELSEQECWALFKRFACFGRSLSECEQL 351 (976)
Q Consensus 284 ~~~~~l~~~l~~~~~gs~iivTtR~~~v~~-~---------~-~~-~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~ 351 (976)
..|..+...+.....+.++|+|++...... . . +. ...+.+.+|+.+++.+++...+..... .. ...
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~-~~~ 232 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI-DF-KDY 232 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC-CC-CCH
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC-CC-CcH
Confidence 234333333333234678999999764311 1 1 11 257899999999999999875421111 11 111
Q ss_pred HHHHHHHHhhcCCCchHHHHHhhhhccCCCHHHHHHHHhhhhhhhhhhhhhhhHHHH-hhhc--CCcHHHHHHHhhhccc
Q 002044 352 EEIGKKIVGKCKGLPLAAKTIGSLLRFKRTREEWQSILDSEIWQLEEFEKGLLAPLL-LSYN--DLPTIIKQCFLYCAVF 428 (976)
Q Consensus 352 ~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~-~sy~--~L~~~~k~cfl~~~~f 428 (976)
.+|++.|+|+|+++..++..+....+...|..-.- ......+...+. +.++ .+++..+..+..+|.
T Consensus 233 ----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~- 301 (357)
T 2fna_A 233 ----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTL------EYAKKLILKEFENFLHGREIARKRYLNIMRTLSK- 301 (357)
T ss_dssp ----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHH------HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-
T ss_pred ----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHH------HHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc-
Confidence 67999999999999999877643333333322110 000111112222 2222 688899999999997
Q ss_pred CCCceeChHHHHHHHH-HcCcccccCCchhhHHHHHHHHHHHHHhcCCccccccCCCCcEeEEE-echhHHHH
Q 002044 429 PKDCFLERDELIKLWM-AQGYIVQKGNKEMEMEMIGEGYFDYLATRSFFQEFEKDEAGIVRRCK-MHDIVHDF 499 (976)
Q Consensus 429 p~~~~i~~~~li~~w~-a~g~i~~~~~~~~~~~~~~~~~~~~L~~r~ll~~~~~~~~~~~~~~~-mHdlv~~l 499 (976)
+. +...+..... ..|. . .. ......+++.|.+.+++.... + .|+ .|++++++
T Consensus 302 --g~--~~~~l~~~~~~~~g~----~-~~---~~~~~~~L~~L~~~gli~~~~----~---~y~f~~~~~~~~ 355 (357)
T 2fna_A 302 --CG--KWSDVKRALELEEGI----E-IS---DSEIYNYLTQLTKHSWIIKEG----E---KYCPSEPLISLA 355 (357)
T ss_dssp --CB--CHHHHHHHHHHHHCS----C-CC---HHHHHHHHHHHHHTTSEEESS----S---CEEESSHHHHHH
T ss_pred --CC--CHHHHHHHHHHhcCC----C-CC---HHHHHHHHHHHHhCCCEEecC----C---EEEecCHHHHHh
Confidence 21 3344332211 1121 0 00 334567899999999987542 1 244 57777764
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.46 E-value=5.4e-13 Score=142.15 Aligned_cols=85 Identities=18% Similarity=0.282 Sum_probs=48.7
Q ss_pred CCCCcccCccccCCCccceecC--ccccccCc-cccccCCccEEecCCCCCCcccch-hhcccCCCcEEEecccccccCc
Q 002044 595 GSGTNEIPKGIKKLRHLRYLKL--YLVEKLPE-TCCELLNLQTLNMCGSPGLKRLPQ-GIGKLINLRHLMFEVDYLEYMP 670 (976)
Q Consensus 595 ~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~l~~~~l~~lp 670 (976)
+..+..+|..+. .+|++|++ +.+..+|. .+.++++|++|++++|. +..+|. .+..+++|++|++++|.+..++
T Consensus 16 ~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (276)
T 2z62_A 16 ELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (276)
T ss_dssp TSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccC
Confidence 334445565443 35666666 45555554 56666777777777765 555543 4666677777777666655544
Q ss_pred -ccccCCCCCCcC
Q 002044 671 -KGIERLTSLRTL 682 (976)
Q Consensus 671 -~~i~~l~~L~~L 682 (976)
..+..+++|+.|
T Consensus 93 ~~~~~~l~~L~~L 105 (276)
T 2z62_A 93 LGAFSGLSSLQKL 105 (276)
T ss_dssp TTTTTTCTTCCEE
T ss_pred hhhhcCCccccEE
Confidence 234444444444
No 84
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.45 E-value=1.1e-15 Score=182.62 Aligned_cols=62 Identities=15% Similarity=0.056 Sum_probs=37.8
Q ss_pred cCCccceeeecccccccccccCCCccccCCCcceEeeecCCCCCCCCcCC-CCCCCCCeEEEccC
Q 002044 867 AFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNSLPDQL-LQSTTLEELEIIRC 930 (976)
Q Consensus 867 ~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l-~~l~~L~~L~l~~c 930 (976)
.+|+|+.|.+.+++- ..... ......+++|+.|++++|+....-...+ ..++.|+...+.+.
T Consensus 479 ~~~~L~~L~L~~n~~-~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 479 GCDSLRKLEIRDCPF-GDKAL-LANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp HCTTCCEEEEESCSC-CHHHH-HHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred cCCCcCEEECcCCCC-cHHHH-HHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 589999999998764 22221 1113468999999999998521111111 34566766555544
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.43 E-value=3.2e-13 Score=144.60 Aligned_cols=62 Identities=18% Similarity=0.081 Sum_probs=42.4
Q ss_pred CCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccc
Q 002044 770 QPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMPALGILPSLEVLKIRFMK 831 (976)
Q Consensus 770 ~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~ 831 (976)
..+++|+.|++++|.+..+.+..+..+++|+.|+|++|......+.+..+++|+.|+|++|+
T Consensus 145 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred ccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 44567777777777777663444567788888888887654333346667788888887765
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.43 E-value=7.9e-15 Score=164.78 Aligned_cols=249 Identities=18% Similarity=0.170 Sum_probs=156.4
Q ss_pred CCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcc--cccCC---CCcccCccccCCCccceecC
Q 002044 542 SFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMK--SLIGS---GTNEIPKGIKKLRHLRYLKL 616 (976)
Q Consensus 542 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~--~l~~~---~~~~lp~~i~~L~~Lr~L~L 616 (976)
.++..+..+++|++|++++|.+....... +...+..+++|++|+|++|. .+.+. .+..++..+..+++|++|+|
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~-l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARW-LSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHH-HHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHH-HHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 34566677889999999999876543333 34447789999999999652 11100 11122233478899999999
Q ss_pred --ccccc-----cCccccccCCccEEecCCCCCCc-----ccchhhccc---------CCCcEEEecccccc--cCc---
Q 002044 617 --YLVEK-----LPETCCELLNLQTLNMCGSPGLK-----RLPQGIGKL---------INLRHLMFEVDYLE--YMP--- 670 (976)
Q Consensus 617 --~~~~~-----lp~~i~~L~~L~~L~l~~~~~l~-----~lp~~i~~l---------~~L~~L~l~~~~l~--~lp--- 670 (976)
+.+.. +|..+.++++|++|+|++|. +. .++..+..+ ++|++|++++|.+. .+|
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 44444 67788889999999999987 54 233444455 89999999887775 344
Q ss_pred ccccCCCCCCcCCceEEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCC
Q 002044 671 KGIERLTSLRTLSEFVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEA 750 (976)
Q Consensus 671 ~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 750 (976)
..+..+++|++|.+..+. ... ..........+..+++|+.|+++++...
T Consensus 181 ~~l~~~~~L~~L~L~~n~-l~~------------------------------~g~~~l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNG-IRP------------------------------EGIEHLLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp HHHHHCTTCCEEECCSSC-CCH------------------------------HHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred HHHHhCCCcCEEECcCCC-CCH------------------------------hHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence 345566667666432211 000 0000111124556677888888776532
Q ss_pred CCCCCccchhhHHHHhhcCCCCCCCceEEEeecCCCCC----Cccccc--ccccccEEEEeCCCCCC----CCCC-C-CC
Q 002044 751 PVGMKDENEANHEAVCEALQPPPNLESLQITGFKGRTL----MLSWIV--SLNKLKKLRLLFCDKCE----VMPA-L-GI 818 (976)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~----~p~~~~--~l~~L~~L~L~~~~~~~----~l~~-l-~~ 818 (976)
......++..+..+++|+.|+|++|.+... +|.++. .+++|+.|+|++|.... .+|. + .+
T Consensus 230 --------~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~ 301 (386)
T 2ca6_A 230 --------HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 301 (386)
T ss_dssp --------HHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHH
T ss_pred --------cHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhc
Confidence 111244555667778888888888876543 244553 37888888888886544 2432 3 45
Q ss_pred CCCcceeeccccc
Q 002044 819 LPSLEVLKIRFMK 831 (976)
Q Consensus 819 L~~L~~L~L~~~~ 831 (976)
+|+|++|+|++|.
T Consensus 302 l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 302 MPDLLFLELNGNR 314 (386)
T ss_dssp CTTCCEEECTTSB
T ss_pred CCCceEEEccCCc
Confidence 7888888888876
No 87
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.43 E-value=6.7e-13 Score=140.81 Aligned_cols=63 Identities=19% Similarity=0.156 Sum_probs=46.9
Q ss_pred CCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccccc
Q 002044 769 LQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMP-ALGILPSLEVLKIRFMK 831 (976)
Q Consensus 769 l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~L~~~~ 831 (976)
+..+++|+.|++++|.+..+.+..+..+++|+.|+|++|......+ .+..+++|+.|+|++|+
T Consensus 153 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 4556788888888888777745567788889999998885443332 26788899999998876
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.42 E-value=4e-13 Score=142.67 Aligned_cols=198 Identities=23% Similarity=0.314 Sum_probs=111.8
Q ss_pred cccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccccCcc
Q 002044 548 FYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLPET 625 (976)
Q Consensus 548 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp~~ 625 (976)
..+++|+.|.+.++.+..... +..+++|++|+++ ++.+..++ .++.+++|++|++ +.+..+|..
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~-------l~~l~~L~~L~l~------~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~ 103 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQG-------IQYLPNVRYLALG------GNKLHDIS-ALKELTNLTYLILTGNQLQSLPNG 103 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTT-------GGGCTTCCEEECT------TSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTT
T ss_pred ccccceeeeeeCCCCcccccc-------cccCCCCcEEECC------CCCCCCch-hhcCCCCCCEEECCCCccCccChh
Confidence 345566666666655432111 4556666666666 33333332 4556666666666 344454433
Q ss_pred -ccccCCccEEecCCCCCCcccchh-hcccCCCcEEEecccccccCccc-ccCCCCCCcCCceEEecCCCCCCCcccccc
Q 002044 626 -CCELLNLQTLNMCGSPGLKRLPQG-IGKLINLRHLMFEVDYLEYMPKG-IERLTSLRTLSEFVVVNGSGKYGSKACNLE 702 (976)
Q Consensus 626 -i~~L~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~ 702 (976)
+.++++|++|++++|. +..+|.. ++.+++|++|++++|.+..+|.. ++.+++|+.|
T Consensus 104 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-------------------- 162 (272)
T 3rfs_A 104 VFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL-------------------- 162 (272)
T ss_dssp TTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE--------------------
T ss_pred HhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE--------------------
Confidence 4556666666666665 4444433 45566666666655555555433 2344444443
Q ss_pred cccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEee
Q 002044 703 GLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITG 782 (976)
Q Consensus 703 ~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~ 782 (976)
+++++..... ....+..+++|+.|++++
T Consensus 163 ----------------------------------------~l~~n~l~~~------------~~~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 163 ----------------------------------------DLSYNQLQSL------------PEGVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp ----------------------------------------ECCSSCCCCC------------CTTTTTTCTTCCEEECCS
T ss_pred ----------------------------------------ECCCCCcCcc------------CHHHhcCCccCCEEECCC
Confidence 3333321100 011234567788888888
Q ss_pred cCCCCCCcccccccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceEeCc
Q 002044 783 FKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMPALGILPSLEVLKIRFMKSVKRVGN 838 (976)
Q Consensus 783 ~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~ 838 (976)
|.+....|..+..+++|+.|+|++|... +.+|+|+.|++..+.....+|.
T Consensus 191 N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 191 NQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBC
T ss_pred CcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccC
Confidence 8877775666778889999999888532 4567888888887664444443
No 89
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.42 E-value=3.2e-13 Score=143.92 Aligned_cols=122 Identities=27% Similarity=0.346 Sum_probs=91.4
Q ss_pred CceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCc-cccCCCccceecC--ccccccC-ccc
Q 002044 551 RKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPK-GIKKLRHLRYLKL--YLVEKLP-ETC 626 (976)
Q Consensus 551 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~-~i~~L~~Lr~L~L--~~~~~lp-~~i 626 (976)
++|++|++++|.+...... .|.++++|++|+++ ++.+..++. .+.++++|++|++ +.+..+| ..+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~-----~~~~l~~L~~L~l~------~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSY-----SFFSFPELQVLDLS------RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96 (276)
T ss_dssp TTCCEEECTTCCCCEECTT-----TTTTCTTCSEEECT------TCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred CCccEEECCCCcccccCHh-----HhccccCCcEEECC------CCcCCccCHHHccCCcCCCEEECCCCccCccChhhh
Confidence 5688888888876543322 27788889999888 555656654 6788888888888 5566665 567
Q ss_pred cccCCccEEecCCCCCCcccch-hhcccCCCcEEEeccccccc--CcccccCCCCCCcCCc
Q 002044 627 CELLNLQTLNMCGSPGLKRLPQ-GIGKLINLRHLMFEVDYLEY--MPKGIERLTSLRTLSE 684 (976)
Q Consensus 627 ~~L~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~~ 684 (976)
.++++|++|++++|. +..++. .++.+++|++|++++|.+.. +|..++.+++|+.|++
T Consensus 97 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 97 SGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156 (276)
T ss_dssp TTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred cCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEEC
Confidence 888888888888887 666654 57888888888888888776 5777888888887754
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.42 E-value=2.5e-14 Score=157.55 Aligned_cols=116 Identities=17% Similarity=0.122 Sum_probs=71.4
Q ss_pred eeEEEecCcccchhhhHHHHHHHHhcC--CCcceEEecCcccccCCCCcccCccccCCCccceecCc--cccc--cCccc
Q 002044 553 LRSLMLSYNTLNQKASAQVLQGLFDQL--TGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKLY--LVEK--LPETC 626 (976)
Q Consensus 553 Lr~L~l~~~~~~~~~~~~~~~~~~~~l--~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L~--~~~~--lp~~i 626 (976)
++.++++++.+.. ..+..+ +++++|+++ ++.+...+..+..+.+|++|+++ .+.. +|..+
T Consensus 49 ~~~l~l~~~~~~~--------~~~~~~~~~~l~~L~l~------~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~ 114 (336)
T 2ast_B 49 WQTLDLTGKNLHP--------DVTGRLLSQGVIAFRCP------RSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL 114 (336)
T ss_dssp SSEEECTTCBCCH--------HHHHHHHHTTCSEEECT------TCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHH
T ss_pred heeeccccccCCH--------HHHHhhhhccceEEEcC------CccccccchhhccCCCCCEEEccCCCcCHHHHHHHH
Confidence 5677777766431 113444 678888888 44455555556677888888883 3332 56667
Q ss_pred cccCCccEEecCCCCCCcccchhhcccCCCcEEEeccc-cccc--CcccccCCCCCCcC
Q 002044 627 CELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVD-YLEY--MPKGIERLTSLRTL 682 (976)
Q Consensus 627 ~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~-~l~~--lp~~i~~l~~L~~L 682 (976)
..+++|++|++++|......|..++++++|++|+++++ .+.. +|..+..+++|++|
T Consensus 115 ~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L 173 (336)
T 2ast_B 115 SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 173 (336)
T ss_dssp TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred hhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEE
Confidence 77788888888887633356667777788888877555 3432 33334444444444
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.41 E-value=3.7e-13 Score=145.61 Aligned_cols=190 Identities=17% Similarity=0.216 Sum_probs=126.5
Q ss_pred cccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccccCcc
Q 002044 548 FYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLPET 625 (976)
Q Consensus 548 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp~~ 625 (976)
..+++|++|.++++.+.... . +..+++|++|+++ ++.+..++. +..+++|++|++ +.+..+| .
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~------~-~~~l~~L~~L~L~------~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~ 102 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE------G-VQYLNNLIGLELK------DNQITDLAP-LKNLTKITELELSGNPLKNVS-A 102 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT------T-GGGCTTCCEEECC------SSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-G
T ss_pred HHcCCcCEEEeeCCCccCch------h-hhccCCCCEEEcc------CCcCCCChh-HccCCCCCEEEccCCcCCCch-h
Confidence 35667778888777654321 1 6677888888887 555666665 777888888888 4566665 5
Q ss_pred ccccCCccEEecCCCCCCcccchhhcccCCCcEEEecccccccCcccccCCCCCCcCCceEEecCCCCCCCccccccccc
Q 002044 626 CCELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLEYMPKGIERLTSLRTLSEFVVVNGSGKYGSKACNLEGLR 705 (976)
Q Consensus 626 i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~ 705 (976)
+..+++|++|++++|. +..+|. +..+++|++|++++|.+..+|. ++.+++|+.|++..+. +.
T Consensus 103 ~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~------------l~--- 164 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ------------VS--- 164 (308)
T ss_dssp GTTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC------------CC---
T ss_pred hcCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc------------CC---
Confidence 7778888888888876 666665 7778888888887777777765 6666777666532211 00
Q ss_pred ccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEeecCC
Q 002044 706 YLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITGFKG 785 (976)
Q Consensus 706 ~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 785 (976)
... .+..+++|+.|+++.+..... ..+..+++|+.|++++|.+
T Consensus 165 ------------------~~~-----~l~~l~~L~~L~l~~n~l~~~--------------~~l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 165 ------------------DLT-----PLANLSKLTTLKADDNKISDI--------------SPLASLPNLIEVHLKNNQI 207 (308)
T ss_dssp ------------------CCG-----GGTTCTTCCEEECCSSCCCCC--------------GGGGGCTTCCEEECTTSCC
T ss_pred ------------------CCh-----hhcCCCCCCEEECCCCccCcC--------------hhhcCCCCCCEEEccCCcc
Confidence 000 033455677777776643210 1145567888888888887
Q ss_pred CCCCcccccccccccEEEEeCCCC
Q 002044 786 RTLMLSWIVSLNKLKKLRLLFCDK 809 (976)
Q Consensus 786 ~~~~p~~~~~l~~L~~L~L~~~~~ 809 (976)
... + .+..+++|+.|+|++|..
T Consensus 208 ~~~-~-~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 208 SDV-S-PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CBC-G-GGTTCTTCCEEEEEEEEE
T ss_pred Ccc-c-cccCCCCCCEEEccCCee
Confidence 776 4 367888899999988863
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.39 E-value=7.7e-13 Score=143.52 Aligned_cols=227 Identities=14% Similarity=0.023 Sum_probs=152.5
Q ss_pred cCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCc-ccCccc--cCCCccceecC--ccccc-cC
Q 002044 550 ARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTN-EIPKGI--KKLRHLRYLKL--YLVEK-LP 623 (976)
Q Consensus 550 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~-~lp~~i--~~L~~Lr~L~L--~~~~~-lp 623 (976)
...++.+.+.++.+.......... +..+++|+.|++++ +.+. ..|..+ +.+.+|++|+| +.+.. .|
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~------n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~ 134 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALR--VLAYSRLKELTLED------LKITGTMPPLPLEATGLALSSLRLRNVSWATGRS 134 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHH--HHHHSCCCEEEEES------CCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTS
T ss_pred hcceeEEEEeCCcCCHHHHHHHHH--hcccCceeEEEeeC------CEeccchhhhhhhccCCCCCEEEeecccccchhh
Confidence 445788888887765443333222 33456799999994 4443 456666 88999999999 44443 22
Q ss_pred ----ccccccCCccEEecCCCCCCcccc-hhhcccCCCcEEEeccccccc---Cc--ccccCCCCCCcCCceEEecCCCC
Q 002044 624 ----ETCCELLNLQTLNMCGSPGLKRLP-QGIGKLINLRHLMFEVDYLEY---MP--KGIERLTSLRTLSEFVVVNGSGK 693 (976)
Q Consensus 624 ----~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~---lp--~~i~~l~~L~~L~~~~~~~~~~~ 693 (976)
..+..+++|++|++++|. +..+| ..++.+++|++|++++|.+.. ++ ..++.+++|++|++..+.
T Consensus 135 ~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~----- 208 (310)
T 4glp_A 135 WLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG----- 208 (310)
T ss_dssp SHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-----
T ss_pred hhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-----
Confidence 244579999999999998 65554 678899999999998887643 33 234678888888643221
Q ss_pred CCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCC
Q 002044 694 YGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPP 773 (976)
Q Consensus 694 ~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 773 (976)
+ +.........+..+++|+.|+++++....... .....+..++
T Consensus 209 -------l---------------------~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p---------~~~~~~~~~~ 251 (310)
T 4glp_A 209 -------M---------------------ETPTGVCAALAAAGVQPHSLDLSHNSLRATVN---------PSAPRCMWSS 251 (310)
T ss_dssp -------C---------------------CCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC---------SCCSSCCCCT
T ss_pred -------C---------------------CchHHHHHHHHhcCCCCCEEECCCCCCCccch---------hhHHhccCcC
Confidence 1 11111111112445678888888776431100 0011223347
Q ss_pred CCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccc
Q 002044 774 NLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMPALGILPSLEVLKIRFMK 831 (976)
Q Consensus 774 ~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~ 831 (976)
+|+.|++++|.+..+ |.++. ++|+.|+|++|.. ..+|.+..+++|+.|+|++|+
T Consensus 252 ~L~~L~Ls~N~l~~l-p~~~~--~~L~~L~Ls~N~l-~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 252 ALNSLNLSFAGLEQV-PKGLP--AKLRVLDLSSNRL-NRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp TCCCEECCSSCCCSC-CSCCC--SCCSCEECCSCCC-CSCCCTTSCCCCSCEECSSTT
T ss_pred cCCEEECCCCCCCch-hhhhc--CCCCEEECCCCcC-CCCchhhhCCCccEEECcCCC
Confidence 999999999998876 77664 8999999999954 455667889999999999886
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.39 E-value=2.6e-12 Score=141.81 Aligned_cols=228 Identities=14% Similarity=0.136 Sum_probs=138.9
Q ss_pred CCCCcccCccccCCCccceecC--ccccccCc-cccccCCccEEecCCCCCCcccchh-hcccCCCcEEE-ecccccccC
Q 002044 595 GSGTNEIPKGIKKLRHLRYLKL--YLVEKLPE-TCCELLNLQTLNMCGSPGLKRLPQG-IGKLINLRHLM-FEVDYLEYM 669 (976)
Q Consensus 595 ~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~-l~~~~l~~l 669 (976)
+..+.++|..+ ..++++|+| +.++.+|. .+.+|++|++|+|++|..+..+|.+ +.++++|.++. +.+|.+..+
T Consensus 18 ~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l 95 (350)
T 4ay9_X 18 ESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 95 (350)
T ss_dssp STTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred CCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc
Confidence 45566667655 246777777 56777775 4677777777777777644555543 56677766543 366777776
Q ss_pred cc-cccCCCCCCcCCceEEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecC
Q 002044 670 PK-GIERLTSLRTLSEFVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNK 748 (976)
Q Consensus 670 p~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 748 (976)
|+ .++.+++|+.|.+..+. ... +..... ....++..|.+..+.
T Consensus 96 ~~~~f~~l~~L~~L~l~~n~-l~~--------~~~~~~---------------------------~~~~~l~~l~l~~~~ 139 (350)
T 4ay9_X 96 NPEAFQNLPNLQYLLISNTG-IKH--------LPDVHK---------------------------IHSLQKVLLDIQDNI 139 (350)
T ss_dssp CTTSBCCCTTCCEEEEEEEC-CSS--------CCCCTT---------------------------CCBSSCEEEEEESCT
T ss_pred Cchhhhhccccccccccccc-ccc--------CCchhh---------------------------cccchhhhhhhcccc
Confidence 53 45677777777654443 111 000000 001122233332211
Q ss_pred CCCCCCCccchhhHHHHh-hcCCC-CCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCCC--CCCCCCcce
Q 002044 749 EAPVGMKDENEANHEAVC-EALQP-PPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMPA--LGILPSLEV 824 (976)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~-~~l~~-~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~L~~L~~ 824 (976)
.. ..+. ..+.. ...++.|++++|.+..+ |.......+|+.|.+.++..++.+|. ++.+++|++
T Consensus 140 ~i------------~~l~~~~f~~~~~~l~~L~L~~N~i~~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~ 206 (350)
T 4ay9_X 140 NI------------HTIERNSFVGLSFESVILWLNKNGIQEI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI 206 (350)
T ss_dssp TC------------CEECTTSSTTSBSSCEEEECCSSCCCEE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSE
T ss_pred cc------------ccccccchhhcchhhhhhccccccccCC-ChhhccccchhHHhhccCCcccCCCHHHhccCcccch
Confidence 00 0000 01112 24678888888888776 55555667889999988777887774 688999999
Q ss_pred eeccccccceEeCccccCCCcCcccccccCCCCCCCCCccCccCCccceeeecccccccccccCCCccccCCCcceEeee
Q 002044 825 LKIRFMKSVKRVGNEFLGTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKIS 904 (976)
Q Consensus 825 L~L~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~ 904 (976)
|+|++|. ++.++. ..|.+|+.|.+.++.+++.+.. +..|++|+.+++.
T Consensus 207 LdLs~N~-l~~lp~---------------------------~~~~~L~~L~~l~~~~l~~lP~----l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 207 LDISRTR-IHSLPS---------------------------YGLENLKKLRARSTYNLKKLPT----LEKLVALMEASLT 254 (350)
T ss_dssp EECTTSC-CCCCCS---------------------------SSCTTCCEEECTTCTTCCCCCC----TTTCCSCCEEECS
T ss_pred hhcCCCC-cCccCh---------------------------hhhccchHhhhccCCCcCcCCC----chhCcChhhCcCC
Confidence 9999885 655543 2477888888888777665553 4468888888876
Q ss_pred c
Q 002044 905 Y 905 (976)
Q Consensus 905 ~ 905 (976)
+
T Consensus 255 ~ 255 (350)
T 4ay9_X 255 Y 255 (350)
T ss_dssp C
T ss_pred C
Confidence 4
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.37 E-value=1.1e-13 Score=152.32 Aligned_cols=166 Identities=14% Similarity=0.180 Sum_probs=92.7
Q ss_pred cCCCCCCCceEEEeecC-CCC-CCcccccccccccEEEEeCCCCCCC--CC-CCCCCC-Ccceeeccccc-cce--EeCc
Q 002044 768 ALQPPPNLESLQITGFK-GRT-LMLSWIVSLNKLKKLRLLFCDKCEV--MP-ALGILP-SLEVLKIRFMK-SVK--RVGN 838 (976)
Q Consensus 768 ~l~~~~~L~~L~L~~~~-~~~-~~p~~~~~l~~L~~L~L~~~~~~~~--l~-~l~~L~-~L~~L~L~~~~-~l~--~~~~ 838 (976)
.+..+++|++|++++|. ... .++..+..+++|+.|+|++|..+.. ++ .++.+| +|++|+|++|. .+. .++.
T Consensus 137 ~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~ 216 (336)
T 2ast_B 137 TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST 216 (336)
T ss_dssp HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH
Confidence 34445666666666662 321 1244455666666666666633332 22 244566 77777776664 121 0111
Q ss_pred cccCCCcCcccccccCCCCCCCCCccCccCCccceeeecccccccccccCCCccccCCCcceEeeecCCCCCCC-CcCCC
Q 002044 839 EFLGTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNSL-PDQLL 917 (976)
Q Consensus 839 ~~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l-p~~l~ 917 (976)
. ...+|+|+.|.+.++..+.... +..+..+++|++|++++|..+..- ...+.
T Consensus 217 ~-------------------------~~~~~~L~~L~l~~~~~l~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~ 269 (336)
T 2ast_B 217 L-------------------------VRRCPNLVHLDLSDSVMLKNDC--FQEFFQLNYLQHLSLSRCYDIIPETLLELG 269 (336)
T ss_dssp H-------------------------HHHCTTCSEEECTTCTTCCGGG--GGGGGGCTTCCEEECTTCTTCCGGGGGGGG
T ss_pred H-------------------------HhhCCCCCEEeCCCCCcCCHHH--HHHHhCCCCCCEeeCCCCCCCCHHHHHHHh
Confidence 0 1136677777776654332211 123456788888888888633211 11356
Q ss_pred CCCCCCeEEEccCcchHHhhccCCCCCcccc-cCCCceeecccccccCcchhh
Q 002044 918 QSTTLEELEIIRCPILEERFKKDTGEDWSKI-THIPKIKIHGEYVQGSPPLLK 969 (976)
Q Consensus 918 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i-~~l~~l~~~~n~~~~~~~~~~ 969 (976)
++++|+.|++++| + +...+..+ .+++.+++++|.+++..|...
T Consensus 270 ~~~~L~~L~l~~~--i-------~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 270 EIPTLKTLQVFGI--V-------PDGTLQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp GCTTCCEEECTTS--S-------CTTCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred cCCCCCEEeccCc--c-------CHHHHHHHHhhCcceEEecccCccccCCcc
Confidence 6788888888888 2 22233344 458888888888888777553
No 95
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.35 E-value=1.9e-12 Score=134.68 Aligned_cols=57 Identities=14% Similarity=0.036 Sum_probs=41.1
Q ss_pred CCCceEEEeecC-CCCCCccccccc-ccccEEEEeCCCCCCCCCCCCCCCCcceeeccccc
Q 002044 773 PNLESLQITGFK-GRTLMLSWIVSL-NKLKKLRLLFCDKCEVMPALGILPSLEVLKIRFMK 831 (976)
Q Consensus 773 ~~L~~L~L~~~~-~~~~~p~~~~~l-~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~ 831 (976)
++|+.|++++|. +..+.+..+..+ ++|+.|+|++|.. ..+|.- .+++|+.|+++++.
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l-~~l~~~-~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV-TALPSK-GLEHLKELIARNTW 237 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC-CCCCCT-TCTTCSEEECTTC-
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc-ccCChh-HhccCceeeccCcc
Confidence 578888888884 666645567777 8889999988754 345443 68888888888765
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.35 E-value=5.5e-15 Score=166.04 Aligned_cols=93 Identities=14% Similarity=0.183 Sum_probs=60.6
Q ss_pred HHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecCcc--cc----ccCccc-------cccCCccEEecCC
Q 002044 573 QGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKLYL--VE----KLPETC-------CELLNLQTLNMCG 639 (976)
Q Consensus 573 ~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L~~--~~----~lp~~i-------~~L~~L~~L~l~~ 639 (976)
...+..+++|++|+|++|. +.......++..+..+++|++|+|+. +. .+|..+ .++++|++|+|++
T Consensus 25 ~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp SHHHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHhcCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 3347788889999998542 11111223445577788888888832 23 234333 6778888888888
Q ss_pred CCCCcc-----cchhhcccCCCcEEEecccccc
Q 002044 640 SPGLKR-----LPQGIGKLINLRHLMFEVDYLE 667 (976)
Q Consensus 640 ~~~l~~-----lp~~i~~l~~L~~L~l~~~~l~ 667 (976)
|. +.. +|..+.++++|++|++++|.+.
T Consensus 104 n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 104 NA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp CC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred Cc-CCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 86 544 6777788888888888776654
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.35 E-value=2e-11 Score=134.70 Aligned_cols=238 Identities=14% Similarity=0.066 Sum_probs=134.9
Q ss_pred ceecC--ccccccCccccccCCccEEecCCCCCCcccchh-hcccCCCcEEEeccccc-ccCccc-ccCCCCCCcCCceE
Q 002044 612 RYLKL--YLVEKLPETCCELLNLQTLNMCGSPGLKRLPQG-IGKLINLRHLMFEVDYL-EYMPKG-IERLTSLRTLSEFV 686 (976)
Q Consensus 612 r~L~L--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~~~~l-~~lp~~-i~~l~~L~~L~~~~ 686 (976)
+.++. .++.++|..+ ..++++|+|++|. ++.+|.+ +.++++|++|+++.|.+ +.+|.+ +.++++|+.+....
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34555 4677888766 3688999999987 8888874 78899999999988776 445543 45566655432111
Q ss_pred EecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhHHHHh
Q 002044 687 VVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHEAVC 766 (976)
Q Consensus 687 ~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 766 (976)
.+ ++. .+. ...+..+++|+.|+++.+...... .
T Consensus 89 ~N--------------------~l~-~l~--------------~~~f~~l~~L~~L~l~~n~l~~~~------------~ 121 (350)
T 4ay9_X 89 AN--------------------NLL-YIN--------------PEAFQNLPNLQYLLISNTGIKHLP------------D 121 (350)
T ss_dssp ET--------------------TCC-EEC--------------TTSBCCCTTCCEEEEEEECCSSCC------------C
T ss_pred CC--------------------ccc-ccC--------------chhhhhccccccccccccccccCC------------c
Confidence 11 000 000 012344556666666665432100 0
Q ss_pred hcCCCCCCCceEEEeecC-CCCCCccccccc-ccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceEeCccccCCC
Q 002044 767 EALQPPPNLESLQITGFK-GRTLMLSWIVSL-NKLKKLRLLFCDKCEVMPALGILPSLEVLKIRFMKSVKRVGNEFLGTE 844 (976)
Q Consensus 767 ~~l~~~~~L~~L~L~~~~-~~~~~p~~~~~l-~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~ 844 (976)
.......++..|++.++. +..+.+..+..+ ..|+.|+|++|......+.....++|+.|.+.++..++.++.+.+
T Consensus 122 ~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f--- 198 (350)
T 4ay9_X 122 VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVF--- 198 (350)
T ss_dssp CTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTT---
T ss_pred hhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHh---
Confidence 011222345555554432 222212233332 345666666654332222333445666666665555555543221
Q ss_pred cCcccccccCCCCCCCCCccCccCCccceeeecccccccccccCCCccccCCCcceEeeecCCCCCCCCcCCCCCCCCCe
Q 002044 845 ISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNSLPDQLLQSTTLEE 924 (976)
Q Consensus 845 ~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~ 924 (976)
..+++|+.|++.+. .+..+ |. ..+.+|+.|.+.+|..++.+|. +..+++|+.
T Consensus 199 ---------------------~~l~~L~~LdLs~N-~l~~l---p~--~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~ 250 (350)
T 4ay9_X 199 ---------------------HGASGPVILDISRT-RIHSL---PS--YGLENLKKLRARSTYNLKKLPT-LEKLVALME 250 (350)
T ss_dssp ---------------------TTEECCSEEECTTS-CCCCC---CS--SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCE
T ss_pred ---------------------ccCcccchhhcCCC-CcCcc---Ch--hhhccchHhhhccCCCcCcCCC-chhCcChhh
Confidence 24566777776652 23322 22 2588999999999999999995 778999999
Q ss_pred EEEccC
Q 002044 925 LEIIRC 930 (976)
Q Consensus 925 L~l~~c 930 (976)
+++.+.
T Consensus 251 l~l~~~ 256 (350)
T 4ay9_X 251 ASLTYP 256 (350)
T ss_dssp EECSCH
T ss_pred CcCCCC
Confidence 999653
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.31 E-value=4e-12 Score=136.21 Aligned_cols=58 Identities=22% Similarity=0.263 Sum_probs=38.1
Q ss_pred CCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccc
Q 002044 771 PPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMPALGILPSLEVLKIRFMK 831 (976)
Q Consensus 771 ~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~ 831 (976)
.+++|+.|++++|.+... +. +..+++|+.|+|++|. +..++.+..+++|+.|++++|+
T Consensus 154 ~l~~L~~L~L~~N~l~~~-~~-l~~l~~L~~L~L~~N~-i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 154 RLTKLDTLSLEDNQISDI-VP-LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp GCTTCSEEECCSSCCCCC-GG-GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEEEEEEE
T ss_pred cCCCCCEEEccCCccccc-hh-hcCCCccCEEECCCCc-CCCChhhccCCCCCEEECcCCc
Confidence 345666666666666555 33 6667777777777773 4445667777777777777765
No 99
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.30 E-value=4.6e-10 Score=125.69 Aligned_cols=282 Identities=13% Similarity=0.028 Sum_probs=163.5
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcc--------cccceeehH------
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISN--------FEKRMWNCE------ 239 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--------f~~~~wv~~------ 239 (976)
..++||+.+++++.+++..... ....+.+.|+|++|+||||+|+.+++. .... ....+|+.+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~ 95 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNE--IEEVKKEDEEYKDVKQAYVNCREVGGT 95 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHH--HHHHHHHSSSSTTCEEEEEEHHHHCSC
T ss_pred CCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhhhcCCCCceEEEEECccCCCC
Confidence 6799999999999988864322 234568999999999999999999983 3221 223455553
Q ss_pred ------HHHHHHhCCCCC--cccHHHHHHHHHHHHcCCceEEEEcCCCCCCccCcHhH-HHhhcCCCCCcEEEEEcCchh
Q 002044 240 ------SIIEALEGFAPN--LGELNSLLLRIDAFIARKKFLLILDDVWTDDYSKWEPF-RRCLINGHRESRILVTTRKET 310 (976)
Q Consensus 240 ------~~~~~l~~~~~~--~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l-~~~l~~~~~gs~iivTtR~~~ 310 (976)
.++..+.+.... ..........+.+.+..++.+|||||++.-....+... ...+.....+..||+||+...
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~ 175 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTT
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCc
Confidence 223444332211 12335567777888887777999999954222211222 333333226788999998753
Q ss_pred hhhc----c--CCcceEecCCCCHHHHHHHHHHHhcC-CCCCCcchhHHHHHHHHHhhcC---CCch-HHHHHhhh--hc
Q 002044 311 VARM----M--ESTDVIFIKELSEQECWALFKRFACF-GRSLSECEQLEEIGKKIVGKCK---GLPL-AAKTIGSL--LR 377 (976)
Q Consensus 311 v~~~----~--~~~~~~~l~~L~~~~~~~Lf~~~~~~-~~~~~~~~~~~~~~~~i~~~c~---GlPL-ai~~~~~~--l~ 377 (976)
.... . .....+.+++++.++..++|...+.. -.....++ +..+.+++.++ |.|. |+..+-.. +.
T Consensus 176 ~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 176 VRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp TTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred hHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 2111 1 11248999999999999999987531 11111222 23445667776 8876 44433322 22
Q ss_pred c---CCCHHHHHHHHhhhhhhhhhhhhhhhHHHHhhhcCCcHHHHHHHhhhcccCCCceeChHHHHHHHHHcCcccccCC
Q 002044 378 F---KRTREEWQSILDSEIWQLEEFEKGLLAPLLLSYNDLPTIIKQCFLYCAVFPKDCFLERDELIKLWMAQGYIVQKGN 454 (976)
Q Consensus 378 ~---~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~ 454 (976)
. .-+.+.+..++.... ...+.-++..|+++.+..+..++....+-.+. +.....-...| ..+.
T Consensus 253 ~~~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~~~-- 318 (384)
T 2qby_B 253 SGGGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QKPL-- 318 (384)
T ss_dssp TSSSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CCCC--
T ss_pred cCCCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CCCC--
Confidence 1 125666666555321 13355677889988887777776511100110 11111111122 1111
Q ss_pred chhhHHHHHHHHHHHHHhcCCccccc
Q 002044 455 KEMEMEMIGEGYFDYLATRSFFQEFE 480 (976)
Q Consensus 455 ~~~~~~~~~~~~~~~L~~r~ll~~~~ 480 (976)
. ......+++.|..++++....
T Consensus 319 -~---~~~~~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 319 -S---YRRFSDIISELDMFGIVKIRI 340 (384)
T ss_dssp -C---HHHHHHHHHHHHHTTSEEEEE
T ss_pred -C---HHHHHHHHHHHHhCCCEEEEe
Confidence 1 345667899999999998654
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.27 E-value=6.8e-12 Score=147.60 Aligned_cols=94 Identities=22% Similarity=0.312 Sum_probs=46.2
Q ss_pred cCCCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccccCccccccCCccEEecCCCCCCcccchhhcccCC
Q 002044 578 QLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLPETCCELLNLQTLNMCGSPGLKRLPQGIGKLIN 655 (976)
Q Consensus 578 ~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~ 655 (976)
.+++|+.|+++ ++.+..+| .+..|++|++|+| +.+..+|. +..+++|+.|+|++|. +..+| .+..+++
T Consensus 41 ~L~~L~~L~l~------~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~ 110 (605)
T 1m9s_A 41 ELNSIDQIIAN------NSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKK 110 (605)
T ss_dssp HHTTCCCCBCT------TCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTT
T ss_pred cCCCCCEEECc------CCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCC
Confidence 34455555555 33343443 3455555555555 33444443 5555555555555554 44443 3555555
Q ss_pred CcEEEecccccccCcccccCCCCCCcC
Q 002044 656 LRHLMFEVDYLEYMPKGIERLTSLRTL 682 (976)
Q Consensus 656 L~~L~l~~~~l~~lp~~i~~l~~L~~L 682 (976)
|++|++++|.+..+| .++.+++|+.|
T Consensus 111 L~~L~Ls~N~l~~l~-~l~~l~~L~~L 136 (605)
T 1m9s_A 111 LKSLSLEHNGISDIN-GLVHLPQLESL 136 (605)
T ss_dssp CCEEECTTSCCCCCG-GGGGCTTCSEE
T ss_pred CCEEEecCCCCCCCc-cccCCCccCEE
Confidence 555555555554442 24444444444
No 101
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.27 E-value=1.7e-11 Score=130.12 Aligned_cols=201 Identities=14% Similarity=0.107 Sum_probs=123.7
Q ss_pred CCCCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCC
Q 002044 734 DKKKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVM 813 (976)
Q Consensus 734 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l 813 (976)
..+.+|+.|.+..+.... ...+..+++|+.|++++|.+..+ + .+..+++|++|+|++|......
T Consensus 38 ~~l~~L~~L~l~~~~i~~--------------~~~l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~L~~n~l~~~~ 101 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKS--------------VQGIQYLPNVRYLALGGNKLHDI-S-ALKELTNLTYLILTGNQLQSLP 101 (272)
T ss_dssp HHHTTCCEEECTTSCCCC--------------CTTGGGCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECTTSCCCCCC
T ss_pred ccccceeeeeeCCCCccc--------------ccccccCCCCcEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCccC
Confidence 456789999888765331 12356678999999999988765 3 6778999999999999654433
Q ss_pred CC-CCCCCCcceeeccccccceEeCcc-ccCCCcCcccccccCCCCCCCCCccCccCCccceeeecccccccccccCCCc
Q 002044 814 PA-LGILPSLEVLKIRFMKSVKRVGNE-FLGTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKED 891 (976)
Q Consensus 814 ~~-l~~L~~L~~L~L~~~~~l~~~~~~-~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~ 891 (976)
+. ++.+++|++|++++|. ++.++.. +.....+..+++++|.+...... ....+++|+.|.+.++. +. ...+..
T Consensus 102 ~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~-l~--~~~~~~ 176 (272)
T 3rfs_A 102 NGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG-VFDKLTNLTELDLSYNQ-LQ--SLPEGV 176 (272)
T ss_dssp TTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSC-CC--CCCTTT
T ss_pred hhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHH-HhccCccCCEEECCCCC-cC--ccCHHH
Confidence 33 7889999999999987 5555443 33344556666666655433221 12245556666555431 21 222222
Q ss_pred cccCCCcceEeeecCCCCCCCC-cCCCCCCCCCeEEEccCcchHHhhccCCCCCcccccCCCceeecccccccCcchh
Q 002044 892 ITIMPQLSSMKISYCSKLNSLP-DQLLQSTTLEELEIIRCPILEERFKKDTGEDWSKITHIPKIKIHGEYVQGSPPLL 968 (976)
Q Consensus 892 ~~~l~~L~~L~l~~c~~L~~lp-~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~n~~~~~~~~~ 968 (976)
+..+++|+.|++++|. +..+| ..+..+++|+.|++++|+-. ..++++..+++.+|.+.|.+|..
T Consensus 177 ~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~------------~~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD------------CTCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC------------CCTTTTHHHHHHHHHTGGGBBCT
T ss_pred hcCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCCCcc------------ccCcHHHHHHHHHHhCCCcccCc
Confidence 3456667777776665 44444 33456666777777666321 12345556666666666665543
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.24 E-value=4.5e-12 Score=149.13 Aligned_cols=168 Identities=20% Similarity=0.218 Sum_probs=111.5
Q ss_pred ccCCCccceecC--ccccccCccccccCCccEEecCCCCCCcccchhhcccCCCcEEEecccccccCcccccCCCCCCcC
Q 002044 605 IKKLRHLRYLKL--YLVEKLPETCCELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLEYMPKGIERLTSLRTL 682 (976)
Q Consensus 605 i~~L~~Lr~L~L--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 682 (976)
+..|.+|++|++ +.+..+| .+..|++|+.|+|++|. +..+|. +..+++|++|+++.|.+..+| .++.+++|+.|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEE
Confidence 567889999999 5677776 58899999999999997 777776 899999999999888888765 57777777777
Q ss_pred CceEEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhH
Q 002044 683 SEFVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANH 762 (976)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 762 (976)
++..+. +..+ ..+..+++|+.|+|+.|....
T Consensus 115 ~Ls~N~------------l~~l--------------------------~~l~~l~~L~~L~Ls~N~l~~----------- 145 (605)
T 1m9s_A 115 SLEHNG------------ISDI--------------------------NGLVHLPQLESLYLGNNKITD----------- 145 (605)
T ss_dssp ECTTSC------------CCCC--------------------------GGGGGCTTCSEEECCSSCCCC-----------
T ss_pred EecCCC------------CCCC--------------------------ccccCCCccCEEECCCCccCC-----------
Confidence 532211 0000 012334566666666554320
Q ss_pred HHHhhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccc
Q 002044 763 EAVCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMPALGILPSLEVLKIRFMK 831 (976)
Q Consensus 763 ~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~ 831 (976)
+..+..+++|+.|+|++|.+....| +..+++|+.|+|++|. +..++.+..+++|+.|+|++|.
T Consensus 146 ---l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 146 ---ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp ---CGGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEECCSEE
T ss_pred ---chhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC-CCCChHHccCCCCCEEEccCCc
Confidence 0234455667777777666665523 5566677777776663 3344556666666666666654
No 103
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.24 E-value=9.6e-10 Score=123.26 Aligned_cols=283 Identities=13% Similarity=0.023 Sum_probs=161.2
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcc------cccceeehH--------
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISN------FEKRMWNCE-------- 239 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------f~~~~wv~~-------- 239 (976)
..++||+.+++++..++..... ....+.+.|+|++|+||||+|+.+++. .... -...+|+.+
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~ 94 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYR 94 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHH
Confidence 6799999999999999864321 224568899999999999999999983 3221 112345543
Q ss_pred ---HHHHHHhCCCCC-cccHHHHHHHHHHHHc--CCceEEEEcCCCCCCcc--CcHhHHHhhc--CC---CCCcEEEEEc
Q 002044 240 ---SIIEALEGFAPN-LGELNSLLLRIDAFIA--RKKFLLILDDVWTDDYS--KWEPFRRCLI--NG---HRESRILVTT 306 (976)
Q Consensus 240 ---~~~~~l~~~~~~-~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~--~~~~l~~~l~--~~---~~gs~iivTt 306 (976)
.+...+...... ..........+.+.+. +++.+||||+++.-... ..+.+...+. .. ..+..+|+||
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t 174 (387)
T 2v1u_A 95 VASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGIT 174 (387)
T ss_dssp HHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEEC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEE
Confidence 344445332211 1234555666777764 45889999999542211 1222322222 11 3456788888
Q ss_pred Cchhhhhcc-----CC-c-ceEecCCCCHHHHHHHHHHHhcC-CCCCCcchhHHHHHHHHHhhcC---CCch-HHHHHhh
Q 002044 307 RKETVARMM-----ES-T-DVIFIKELSEQECWALFKRFACF-GRSLSECEQLEEIGKKIVGKCK---GLPL-AAKTIGS 374 (976)
Q Consensus 307 R~~~v~~~~-----~~-~-~~~~l~~L~~~~~~~Lf~~~~~~-~~~~~~~~~~~~~~~~i~~~c~---GlPL-ai~~~~~ 374 (976)
+.......+ .. . ..+.+++++.++..+++...+.. ......++ +..+.++++++ |.|- ++..+..
T Consensus 175 ~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~ 251 (387)
T 2v1u_A 175 NSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRV 251 (387)
T ss_dssp SCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 765322111 11 1 47899999999999999887531 01111222 23445777776 9993 3333322
Q ss_pred hhc-----c--CCCHHHHHHHHhhhhhhhhhhhhhhhHHHHhhhcCCcHHHHHHHhhhc-ccCCCceeChHHHHHHHHH-
Q 002044 375 LLR-----F--KRTREEWQSILDSEIWQLEEFEKGLLAPLLLSYNDLPTIIKQCFLYCA-VFPKDCFLERDELIKLWMA- 445 (976)
Q Consensus 375 ~l~-----~--~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~-~fp~~~~i~~~~li~~w~a- 445 (976)
... . .-+.+.+..++.... ...+.-++..++.+.+..++.++ ++.....+....+.+....
T Consensus 252 a~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
T 2v1u_A 252 AGEIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKEL 321 (387)
T ss_dssp HHHHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 211 1 114556655544311 12345567889998887777666 3322123444444433222
Q ss_pred ---cCcccccCCchhhHHHHHHHHHHHHHhcCCccccc
Q 002044 446 ---QGYIVQKGNKEMEMEMIGEGYFDYLATRSFFQEFE 480 (976)
Q Consensus 446 ---~g~i~~~~~~~~~~~~~~~~~~~~L~~r~ll~~~~ 480 (976)
.| ..+. . ......+++.|...+++....
T Consensus 322 ~~~~~-~~~~----~--~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 322 TSTLG-LEHV----T--LRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHTT-CCCC----C--HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhcC-CCCC----C--HHHHHHHHHHHHhCCCeEEEe
Confidence 22 1111 1 445678899999999998753
No 104
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.23 E-value=5.3e-11 Score=124.58 Aligned_cols=171 Identities=21% Similarity=0.225 Sum_probs=113.0
Q ss_pred CCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccccCc-cccccCCccEEecCCCCCCcccch-hhcccCC
Q 002044 580 TGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLPE-TCCELLNLQTLNMCGSPGLKRLPQ-GIGKLIN 655 (976)
Q Consensus 580 ~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~-~i~~l~~ 655 (976)
...+.++++ +..+..+|..+. .+|++|+| +.+..++. .+.++++|++|++++|. +..+|. .+..+++
T Consensus 14 ~~~~~l~~~------~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~ 84 (251)
T 3m19_A 14 EGKKEVDCQ------GKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTE 84 (251)
T ss_dssp GGGTEEECT------TCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTT
T ss_pred CCCeEEecC------CCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCc
Confidence 346777877 667777887665 57888888 55666654 57888888888888887 655544 4678888
Q ss_pred CcEEEecccccccCccc-ccCCCCCCcCCceEEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCC
Q 002044 656 LRHLMFEVDYLEYMPKG-IERLTSLRTLSEFVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLD 734 (976)
Q Consensus 656 L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~ 734 (976)
|++|++++|.+..+|.. ++.+++|+.|++
T Consensus 85 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L-------------------------------------------------- 114 (251)
T 3m19_A 85 LGTLGLANNQLASLPLGVFDHLTQLDKLYL-------------------------------------------------- 114 (251)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEEC--------------------------------------------------
T ss_pred CCEEECCCCcccccChhHhcccCCCCEEEc--------------------------------------------------
Confidence 88888888877777643 455566555542
Q ss_pred CCCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCC
Q 002044 735 KKKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMP 814 (976)
Q Consensus 735 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~ 814 (976)
+++..... ....+..+++|+.|++++|.+..+.+..+..+++|+.|+|++|......+
T Consensus 115 ----------~~N~l~~~------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 115 ----------GGNQLKSL------------PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp ----------CSSCCCCC------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ----------CCCcCCCc------------ChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 11111000 00112345677777777777776644467778888888888886444333
Q ss_pred -CCCCCCCcceeeccccc
Q 002044 815 -ALGILPSLEVLKIRFMK 831 (976)
Q Consensus 815 -~l~~L~~L~~L~L~~~~ 831 (976)
.+..+++|++|+|++|+
T Consensus 173 ~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTTTTCTTCCEEECCSCC
T ss_pred HHHhCCCCCCEEEeeCCc
Confidence 46778888888888775
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.23 E-value=3.4e-11 Score=120.84 Aligned_cols=145 Identities=18% Similarity=0.243 Sum_probs=114.6
Q ss_pred ccCceeEEEEEccCCCCCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcc-cCcc
Q 002044 526 SQEKLRHLMLVLGYKNSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNE-IPKG 604 (976)
Q Consensus 526 ~~~~~r~l~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~-lp~~ 604 (976)
...+++++.+..+....++ .+..+++|++|++++|.+.... .+..+++|++|+++ ++.+.. .|..
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-------~l~~l~~L~~L~l~------~n~l~~~~~~~ 107 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-------PISGLSNLERLRIM------GKDVTSDKIPN 107 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-------GGTTCTTCCEEEEE------CTTCBGGGSCC
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-------hhhcCCCCCEEEeE------CCccCcccChh
Confidence 3456888899888887766 6788899999999998654321 27889999999999 445543 5778
Q ss_pred ccCCCccceecC--ccccc-cCccccccCCccEEecCCCCCCcccchhhcccCCCcEEEecccccccCcccccCCCCCCc
Q 002044 605 IKKLRHLRYLKL--YLVEK-LPETCCELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLEYMPKGIERLTSLRT 681 (976)
Q Consensus 605 i~~L~~Lr~L~L--~~~~~-lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~ 681 (976)
++.+++|++|++ +.+.. .|..++++++|++|++++|..+..+| .+..+++|++|++++|.+..++ .+..+++|+.
T Consensus 108 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~ 185 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQ 185 (197)
T ss_dssp CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCE
T ss_pred hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCE
Confidence 889999999999 45553 56778899999999999997677777 6889999999999888888877 6888888888
Q ss_pred CCceE
Q 002044 682 LSEFV 686 (976)
Q Consensus 682 L~~~~ 686 (976)
|++..
T Consensus 186 L~l~~ 190 (197)
T 4ezg_A 186 LYAFS 190 (197)
T ss_dssp EEECB
T ss_pred EEeeC
Confidence 76543
No 106
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.21 E-value=7e-10 Score=124.49 Aligned_cols=286 Identities=14% Similarity=0.065 Sum_probs=163.6
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhccc-ccceeehH-----------HH
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNF-EKRMWNCE-----------SI 241 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~-----------~~ 241 (976)
..++||+.+++++.+++...........+.+.|+|++|+||||+|+.+++. ..... ...+|+.+ .+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 679999999999999987532111223358999999999999999999873 32221 12344442 22
Q ss_pred HHHHhCCCC-CcccHHHHHHHHHHHHc--CCceEEEEcCCCCCCccCcHhHHHhhcCCC----CCcEEEEEcCchhhhhc
Q 002044 242 IEALEGFAP-NLGELNSLLLRIDAFIA--RKKFLLILDDVWTDDYSKWEPFRRCLINGH----RESRILVTTRKETVARM 314 (976)
Q Consensus 242 ~~~l~~~~~-~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~iivTtR~~~v~~~ 314 (976)
...+..... ...........+...+. +++.+||||+++.-+......+...+.... .+..||++|+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 333322111 11234455556666554 568899999996544444455555443211 36678888876543322
Q ss_pred cC-------CcceEecCCCCHHHHHHHHHHHhcCC-CCCCcchhHHHHHHHHHhhc---------CCCchHHHHHhhh-h
Q 002044 315 ME-------STDVIFIKELSEQECWALFKRFACFG-RSLSECEQLEEIGKKIVGKC---------KGLPLAAKTIGSL-L 376 (976)
Q Consensus 315 ~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~~~~i~~~c---------~GlPLai~~~~~~-l 376 (976)
+. ....+.+.+++.++..+++...+... .....+ .+..+.|++.+ +|.|-.+..+... .
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 21 12379999999999999998875320 111111 34556688888 7887544433322 1
Q ss_pred --c---cC--CCHHHHHHHHhhhhhhhhhhhhhhhHHHHhhhcCCcHHHHHHHhhhcccC---CCceeChHHHHHHHHH-
Q 002044 377 --R---FK--RTREEWQSILDSEIWQLEEFEKGLLAPLLLSYNDLPTIIKQCFLYCAVFP---KDCFLERDELIKLWMA- 445 (976)
Q Consensus 377 --~---~~--~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp---~~~~i~~~~li~~w~a- 445 (976)
. .. -+.+....+.... ....+.-.+..|+.+.+.++..++.+. .+-.++...+...+..
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~----------~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~ 321 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEV----------LFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIV 321 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHH----------SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHH----------hhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHH
Confidence 1 11 1222222222210 011122345668888888777777654 2214565666555443
Q ss_pred ---cCcccccCCchhhHHHHHHHHHHHHHhcCCcccccc
Q 002044 446 ---QGYIVQKGNKEMEMEMIGEGYFDYLATRSFFQEFEK 481 (976)
Q Consensus 446 ---~g~i~~~~~~~~~~~~~~~~~~~~L~~r~ll~~~~~ 481 (976)
.|... . . ......+++.|...+++.....
T Consensus 322 ~~~~~~~~-~---~---~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 322 CEEYGERP-R---V---HSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HHHTTCCC-C---C---HHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHcCCCC-C---C---HHHHHHHHHHHHhCCCeEEeee
Confidence 12111 0 1 3345678999999999987543
No 107
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.21 E-value=1.5e-10 Score=122.70 Aligned_cols=182 Identities=16% Similarity=0.168 Sum_probs=99.3
Q ss_pred CCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCC-C
Q 002044 737 KNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMP-A 815 (976)
Q Consensus 737 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~ 815 (976)
.+|+.|+++.+..... ....+..+++|++|++++|.+..+.+..+..+++|++|+|++|......+ .
T Consensus 37 ~~l~~L~l~~n~l~~~------------~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 104 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSL------------PSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGV 104 (270)
T ss_dssp TTCSEEECCSSCCSCC------------CTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCEEECcCCCCCee------------CHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhH
Confidence 4677787776653311 11245566788888888877776634445677888888888775433322 3
Q ss_pred CCCCCCcceeeccccccceEeCccccCCCcCcccccccCCCCCCCCCccCccCCccceeeecccccccccccCCCccccC
Q 002044 816 LGILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIM 895 (976)
Q Consensus 816 l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l 895 (976)
+..+++|++|++++|. ++.++...+ ..+++|+.|.+.+. .+. ...+..+..+
T Consensus 105 ~~~l~~L~~L~l~~n~-l~~~~~~~~------------------------~~l~~L~~L~Ls~n-~l~--~~~~~~~~~l 156 (270)
T 2o6q_A 105 FDQLVNLAELRLDRNQ-LKSLPPRVF------------------------DSLTKLTYLSLGYN-ELQ--SLPKGVFDKL 156 (270)
T ss_dssp TTTCSSCCEEECCSSC-CCCCCTTTT------------------------TTCTTCCEEECCSS-CCC--CCCTTTTTTC
T ss_pred cccccCCCEEECCCCc-cCeeCHHHh------------------------CcCcCCCEEECCCC-cCC--ccCHhHccCC
Confidence 5677888888887765 433333221 13445555555442 111 1112223455
Q ss_pred CCcceEeeecCCCCCCCCc-CCCCCCCCCeEEEccCcchHHhhccCCCCCcccccCCCceeecccccccC
Q 002044 896 PQLSSMKISYCSKLNSLPD-QLLQSTTLEELEIIRCPILEERFKKDTGEDWSKITHIPKIKIHGEYVQGS 964 (976)
Q Consensus 896 ~~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~n~~~~~ 964 (976)
++|+.|++++|. +..+|. .+..+++|+.|++++| .+.......+..++++..+++++|.+...
T Consensus 157 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-----~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 157 TSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNN-----QLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS-----CCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred cccceeEecCCc-CcEeChhHhccCCCcCEEECCCC-----cCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 666666666554 444443 2445566666666665 33333333344555566666666655433
No 108
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.20 E-value=1.8e-10 Score=120.07 Aligned_cols=191 Identities=12% Similarity=0.076 Sum_probs=119.8
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeeh--HHHHHHHhC-CCC
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNC--ESIIEALEG-FAP 250 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~--~~~~~~l~~-~~~ 250 (976)
.+++||+..++.+..++.... ..+++.|+|++|+||||+|+.+++. ....+....+.+ ......+.. ...
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKG--LNCETGITATPCGVCDNCREIEQGRFV 95 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHH--HHCTTCSCSSCCSCSHHHHHHHTTCCS
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCCCCCcccHHHHHHhccCCc
Confidence 469999999999999987432 2348899999999999999999873 322221111000 000111111 000
Q ss_pred -------CcccHHHHHHHHHHHH-----cCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCchhh-hhc-cC
Q 002044 251 -------NLGELNSLLLRIDAFI-----ARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKETV-ARM-ME 316 (976)
Q Consensus 251 -------~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v-~~~-~~ 316 (976)
...........+.+.+ .+++.+||+||++.-+...++.+...+.....+..+|+||+.... ... ..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~ 175 (250)
T 1njg_A 96 DLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 175 (250)
T ss_dssp SEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHT
T ss_pred ceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHH
Confidence 0011112222233322 346799999999665555667777777666667889998876432 111 12
Q ss_pred CcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHHhhh
Q 002044 317 STDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTIGSL 375 (976)
Q Consensus 317 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~ 375 (976)
....+.+++++.++..+++...+........ .+..+.|++.|+|.|..+..+...
T Consensus 176 r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 176 RCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHHTTCCBC----HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhhhccCCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3468999999999999999987643222111 344667999999999988776643
No 109
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.19 E-value=4e-11 Score=129.88 Aligned_cols=35 Identities=14% Similarity=0.012 Sum_probs=25.2
Q ss_pred CCCceEEEeecCCCCCCcccccccccccEEEEeCCCC
Q 002044 773 PNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDK 809 (976)
Q Consensus 773 ~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~ 809 (976)
++|+.|++++|.+..+ |. +..+++|+.|+|++|..
T Consensus 272 ~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 272 AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTT
T ss_pred CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCC
Confidence 5777778877777665 44 45678888888887753
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.19 E-value=1.6e-12 Score=144.44 Aligned_cols=90 Identities=12% Similarity=0.159 Sum_probs=45.3
Q ss_pred HHHhcCCCcceEEecCcccccCCCCcccC-----ccccCCC-ccceecC--cccccc-Ccccccc-----CCccEEecCC
Q 002044 574 GLFDQLTGLRVLRIEGMKSLIGSGTNEIP-----KGIKKLR-HLRYLKL--YLVEKL-PETCCEL-----LNLQTLNMCG 639 (976)
Q Consensus 574 ~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp-----~~i~~L~-~Lr~L~L--~~~~~l-p~~i~~L-----~~L~~L~l~~ 639 (976)
.++...++|+.|+|+ ++.+...+ ..+..++ +|++|+| +.+... +..+..+ ++|++|++++
T Consensus 16 ~~~~~~~~L~~L~Ls------~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 89 (362)
T 3goz_A 16 EFTSIPHGVTSLDLS------LNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSG 89 (362)
T ss_dssp HHHTSCTTCCEEECT------TSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred HHHhCCCCceEEEcc------CCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcC
Confidence 334444556666666 33333332 3444454 5555555 233322 2233333 6677777777
Q ss_pred CCCCcccc-hh----hccc-CCCcEEEecccccccCc
Q 002044 640 SPGLKRLP-QG----IGKL-INLRHLMFEVDYLEYMP 670 (976)
Q Consensus 640 ~~~l~~lp-~~----i~~l-~~L~~L~l~~~~l~~lp 670 (976)
|. +...+ .. +..+ ++|++|++++|.+...+
T Consensus 90 n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 90 NF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp SC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred Cc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence 76 44332 32 2333 67777777666665543
No 111
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.18 E-value=3.9e-09 Score=118.23 Aligned_cols=283 Identities=12% Similarity=0.066 Sum_probs=159.8
Q ss_pred CCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhccc---ccceeehH-------HHH
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNF---EKRMWNCE-------SII 242 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~-------~~~ 242 (976)
+..|+||+.+++.+.+++..... ....+.+.|+|++|+||||||+.+++ .....+ ...+|+.+ .++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHH
Confidence 36799999999999998874321 22456899999999999999999998 343332 23456654 223
Q ss_pred HHHhCCC-----CCcccHHHHHHHHHHHHc--CCceEEEEcCCCCCC----ccCcHhHHHhhcC-CCCCcEEEEEcCchh
Q 002044 243 EALEGFA-----PNLGELNSLLLRIDAFIA--RKKFLLILDDVWTDD----YSKWEPFRRCLIN-GHRESRILVTTRKET 310 (976)
Q Consensus 243 ~~l~~~~-----~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~iivTtR~~~ 310 (976)
..+.... .......+....+.+.+. +++.+||+|+++.-. ...+..+...+.. ...+..+|+||+...
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 3332211 011234455666666665 348999999995421 2233334433322 233456788888654
Q ss_pred hhhccC-----C--cceEecCCCCHHHHHHHHHHHhcCC-CCCCcchhHHHHHHHHHhhcC---CCchHHHHHh-hhh--
Q 002044 311 VARMME-----S--TDVIFIKELSEQECWALFKRFACFG-RSLSECEQLEEIGKKIVGKCK---GLPLAAKTIG-SLL-- 376 (976)
Q Consensus 311 v~~~~~-----~--~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~~~~i~~~c~---GlPLai~~~~-~~l-- 376 (976)
....+. . ...+.+++++.++..+++...+... ...... .+..+.+++.++ |.|..+..+. ...
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEI 251 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 332221 1 1479999999999999998764211 111122 334455666666 9988443332 221
Q ss_pred c---c--CCCHHHHHHHHhhhhhhhhhhhhhhhHHHHhhhcCCcHHHHHHHhhhcccCC-C-ceeChHHHHHHHH--H--
Q 002044 377 R---F--KRTREEWQSILDSEIWQLEEFEKGLLAPLLLSYNDLPTIIKQCFLYCAVFPK-D-CFLERDELIKLWM--A-- 445 (976)
Q Consensus 377 ~---~--~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp~-~-~~i~~~~li~~w~--a-- 445 (976)
. . .-+.+.+..++... ....+.-++..+|.+.+..+..++...+ + -.+....+.+... +
T Consensus 252 a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~ 321 (386)
T 2qby_A 252 AERMKDTKVKEEYVYMAKEEI----------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKK 321 (386)
T ss_dssp HHHTTCSSCCHHHHHHHHHHH----------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHH
T ss_pred HHhcCCCccCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHh
Confidence 1 1 11444554444321 1123455677888888877777764322 1 1233333322221 1
Q ss_pred cCcccccCCchhhHHHHHHHHHHHHHhcCCcccc
Q 002044 446 QGYIVQKGNKEMEMEMIGEGYFDYLATRSFFQEF 479 (976)
Q Consensus 446 ~g~i~~~~~~~~~~~~~~~~~~~~L~~r~ll~~~ 479 (976)
.| +.+.. ......+++.|...+++...
T Consensus 322 ~g-~~~~~------~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 322 LG-VEAVT------QRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HT-CCCCC------HHHHHHHHHHHHHHTSEEEE
T ss_pred cC-CCCCC------HHHHHHHHHHHHhCCCEEEE
Confidence 12 11100 23456789999999999764
No 112
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.18 E-value=1.2e-10 Score=121.84 Aligned_cols=59 Identities=20% Similarity=0.134 Sum_probs=28.7
Q ss_pred CCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCCC-CCCCCCcceeeccccc
Q 002044 773 PNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMPA-LGILPSLEVLKIRFMK 831 (976)
Q Consensus 773 ~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~ 831 (976)
++|+.|++++|.+..+.+..+..+++|+.|+|++|......+. +..+++|++|+|++|.
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence 3455555555555444344444555555555555533322221 4455555555555544
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.17 E-value=4.6e-11 Score=119.83 Aligned_cols=150 Identities=15% Similarity=0.144 Sum_probs=75.8
Q ss_pred CCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceE-eCccccCCCcCccccc
Q 002044 773 PNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMPALGILPSLEVLKIRFMKSVKR-VGNEFLGTEISDHIHI 851 (976)
Q Consensus 773 ~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~-~~~~~~~~~~~~~l~l 851 (976)
++|+.|+++++.+..+ | .+..+++|++|++++| ....++.+..+++|++|++++|. ++. .+..
T Consensus 44 ~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~------------ 107 (197)
T 4ezg_A 44 NSLTYITLANINVTDL-T-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKD-VTSDKIPN------------ 107 (197)
T ss_dssp HTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTT-CBGGGSCC------------
T ss_pred CCccEEeccCCCccCh-H-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCc-cCcccChh------------
Confidence 3455555655555544 4 3555566666666665 34444455556666666665554 211 1110
Q ss_pred ccCCCCCCCCCccCccCCccceeeecccccccccccCCCccccCCCcceEeeecCCCCCCCCcCCCCCCCCCeEEEccCc
Q 002044 852 QDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNSLPDQLLQSTTLEELEIIRCP 931 (976)
Q Consensus 852 ~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~ 931 (976)
...+++|+.|.+.++. +. ...+..+..+++|++|++++|..++.+| .+.++++|+.|++++|
T Consensus 108 -------------l~~l~~L~~L~Ls~n~-i~--~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n- 169 (197)
T 4ezg_A 108 -------------LSGLTSLTLLDISHSA-HD--DSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD- 169 (197)
T ss_dssp -------------CTTCTTCCEEECCSSB-CB--GGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-
T ss_pred -------------hcCCCCCCEEEecCCc-cC--cHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-
Confidence 1134555555554421 11 1112224456667777777666566665 3556666777777666
Q ss_pred chHHhhccCCCCCcccccCCCceeecccccc
Q 002044 932 ILEERFKKDTGEDWSKITHIPKIKIHGEYVQ 962 (976)
Q Consensus 932 ~l~~~~~~~~~~~~~~i~~l~~l~~~~n~~~ 962 (976)
.+.... .+..++++..+++++|.+.
T Consensus 170 ----~i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 170 ----GVHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ----CCCCCT--TGGGCSSCCEEEECBC---
T ss_pred ----CCcChH--HhccCCCCCEEEeeCcccC
Confidence 222211 4455666666677666654
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.17 E-value=4.1e-11 Score=139.27 Aligned_cols=174 Identities=18% Similarity=0.194 Sum_probs=112.0
Q ss_pred CCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccccCccccccCCccEEecCCCCCCcccchhhcccCCCc
Q 002044 580 TGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLPETCCELLNLQTLNMCGSPGLKRLPQGIGKLINLR 657 (976)
Q Consensus 580 ~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~ 657 (976)
.+|++|+|+ ++.+..+|..+. .+|++|+| +.+..+| ..+++|++|++++|. +..+|. +.. +|+
T Consensus 59 ~~L~~L~Ls------~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~ 123 (571)
T 3cvr_A 59 NQFSELQLN------RLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLK 123 (571)
T ss_dssp TTCSEEECC------SSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCC
T ss_pred CCccEEEeC------CCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCC
Confidence 378888888 555666777663 67888888 6677787 457888888888886 777887 655 888
Q ss_pred EEEecccccccCcccccCCCCCCcCCceEEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCCCC
Q 002044 658 HLMFEVDYLEYMPKGIERLTSLRTLSEFVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKK 737 (976)
Q Consensus 658 ~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~ 737 (976)
+|++++|.+..+|. .+++|+.|++..+. .. . ++. .++
T Consensus 124 ~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~-----------~---------------lp~-------------~l~ 160 (571)
T 3cvr_A 124 HLDVDNNQLTMLPE---LPALLEYINADNNQ-LT-----------M---------------LPE-------------LPT 160 (571)
T ss_dssp EEECCSSCCSCCCC---CCTTCCEEECCSSC-CS-----------C---------------CCC-------------CCT
T ss_pred EEECCCCcCCCCCC---cCccccEEeCCCCc-cC-----------c---------------CCC-------------cCC
Confidence 88888888888776 56666666532211 00 0 000 124
Q ss_pred CCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEeecCCCCCCcccccccccc-------cEEEEeCCCCC
Q 002044 738 NLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKL-------KKLRLLFCDKC 810 (976)
Q Consensus 738 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L-------~~L~L~~~~~~ 810 (976)
+|+.|++++|.... ++. +. ++|+.|+|++|.+..+ |. +.. +| +.|+|++|...
T Consensus 161 ~L~~L~Ls~N~L~~-------------lp~-l~--~~L~~L~Ls~N~L~~l-p~-~~~--~L~~~~~~L~~L~Ls~N~l~ 220 (571)
T 3cvr_A 161 SLEVLSVRNNQLTF-------------LPE-LP--ESLEALDVSTNLLESL-PA-VPV--RNHHSEETEIFFRCRENRIT 220 (571)
T ss_dssp TCCEEECCSSCCSC-------------CCC-CC--TTCCEEECCSSCCSSC-CC-CC----------CCEEEECCSSCCC
T ss_pred CcCEEECCCCCCCC-------------cch-hh--CCCCEEECcCCCCCch-hh-HHH--hhhcccccceEEecCCCcce
Confidence 66667776664321 111 22 6788888888777655 55 432 56 88888877543
Q ss_pred CCCCC-CCCCCCcceeecccccc
Q 002044 811 EVMPA-LGILPSLEVLKIRFMKS 832 (976)
Q Consensus 811 ~~l~~-l~~L~~L~~L~L~~~~~ 832 (976)
.+|. +..+++|+.|+|++|+-
T Consensus 221 -~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 221 -HIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp -CCCGGGGGSCTTEEEECCSSSC
T ss_pred -ecCHHHhcCCCCCEEEeeCCcC
Confidence 4443 66678888888887763
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.16 E-value=1.5e-11 Score=129.39 Aligned_cols=163 Identities=18% Similarity=0.163 Sum_probs=100.4
Q ss_pred CCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccccCccccccCCccEEecCCCCCCcccchhhcccCCCc
Q 002044 580 TGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLPETCCELLNLQTLNMCGSPGLKRLPQGIGKLINLR 657 (976)
Q Consensus 580 ~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~ 657 (976)
..+..++++ .+.+..++ .+..+.+|++|++ +.+..+| .+..+++|++|++++|. +..+|. +..+++|+
T Consensus 19 ~~l~~l~l~------~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~ 88 (263)
T 1xeu_A 19 ANAVKQNLG------KQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHT------CSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCC
T ss_pred HHHHHHHhc------CCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCC
Confidence 344555555 44444454 4556666666666 4455555 46666666777776665 666655 66666666
Q ss_pred EEEecccccccCcccccCCCCCCcCCceEEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCCCC
Q 002044 658 HLMFEVDYLEYMPKGIERLTSLRTLSEFVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKK 737 (976)
Q Consensus 658 ~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~ 737 (976)
+|++++|.+..+|.... ++|
T Consensus 89 ~L~L~~N~l~~l~~~~~--~~L---------------------------------------------------------- 108 (263)
T 1xeu_A 89 ELSVNRNRLKNLNGIPS--ACL---------------------------------------------------------- 108 (263)
T ss_dssp EEECCSSCCSCCTTCCC--SSC----------------------------------------------------------
T ss_pred EEECCCCccCCcCcccc--Ccc----------------------------------------------------------
Confidence 66666666555443111 333
Q ss_pred CCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCCCCC
Q 002044 738 NLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMPALG 817 (976)
Q Consensus 738 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~ 817 (976)
+.|+++.+.... ...+..+++|+.|++++|.+..+ + .+..+++|+.|+|++|... .++.+.
T Consensus 109 --~~L~L~~N~l~~--------------~~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~-~~~~l~ 169 (263)
T 1xeu_A 109 --SRLFLDNNELRD--------------TDSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT-NTGGLT 169 (263)
T ss_dssp --CEEECCSSCCSB--------------SGGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC-BCTTST
T ss_pred --cEEEccCCccCC--------------ChhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc-chHHhc
Confidence 333333332110 01244566788888888877665 4 5778889999999888543 347788
Q ss_pred CCCCcceeeccccc
Q 002044 818 ILPSLEVLKIRFMK 831 (976)
Q Consensus 818 ~L~~L~~L~L~~~~ 831 (976)
.+++|+.|++++|+
T Consensus 170 ~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 170 RLKKVNWIDLTGQK 183 (263)
T ss_dssp TCCCCCEEEEEEEE
T ss_pred cCCCCCEEeCCCCc
Confidence 89999999998876
No 116
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.15 E-value=5.2e-12 Score=140.19 Aligned_cols=237 Identities=13% Similarity=0.077 Sum_probs=148.6
Q ss_pred ccccCceeEEEecCcccchhhhHHHHHHHHhcCC-CcceEEecCcccccCCCCccc-CccccCC-----CccceecC--c
Q 002044 547 IFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLT-GLRVLRIEGMKSLIGSGTNEI-PKGIKKL-----RHLRYLKL--Y 617 (976)
Q Consensus 547 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~~l~~~~~~~l-p~~i~~L-----~~Lr~L~L--~ 617 (976)
+...++|++|++++|.+....... +...+.+++ +|++|+|++ +.+... +..+..+ .+|++|+| +
T Consensus 18 ~~~~~~L~~L~Ls~n~l~~~~~~~-l~~~l~~~~~~L~~L~Ls~------N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 90 (362)
T 3goz_A 18 TSIPHGVTSLDLSLNNLYSISTVE-LIQAFANTPASVTSLNLSG------NSLGFKNSDELVQILAAIPANVTSLNLSGN 90 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHH-HHHHHHTCCTTCCEEECCS------SCGGGSCHHHHHHHHHTSCTTCCEEECCSS
T ss_pred HhCCCCceEEEccCCCCChHHHHH-HHHHHHhCCCceeEEECcC------CCCCHHHHHHHHHHHhccCCCccEEECcCC
Confidence 344556999999999876654433 334478888 899999994 444333 3344443 89999999 4
Q ss_pred cccccC-cc----cccc-CCccEEecCCCCCCcccch-hh----cc-cCCCcEEEecccccc-----cCcccccCCC-CC
Q 002044 618 LVEKLP-ET----CCEL-LNLQTLNMCGSPGLKRLPQ-GI----GK-LINLRHLMFEVDYLE-----YMPKGIERLT-SL 679 (976)
Q Consensus 618 ~~~~lp-~~----i~~L-~~L~~L~l~~~~~l~~lp~-~i----~~-l~~L~~L~l~~~~l~-----~lp~~i~~l~-~L 679 (976)
.+...+ .. +..+ ++|++|++++|. +...+. .+ .. .++|++|++++|.+. .++..+..++ +|
T Consensus 91 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 169 (362)
T 3goz_A 91 FLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV 169 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccc
Confidence 555443 22 4444 899999999998 665543 23 33 369999999888877 3344445554 67
Q ss_pred CcCCceEEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCCC-CCCceEEEEecCCCCCCCCccc
Q 002044 680 RTLSEFVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKK-KNLVVLILRFNKEAPVGMKDEN 758 (976)
Q Consensus 680 ~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~ 758 (976)
++|++..+. +... ........+... ++|+.|+++++...
T Consensus 170 ~~L~Ls~n~------------l~~~--------------------~~~~l~~~l~~~~~~L~~L~Ls~N~i~-------- 209 (362)
T 3goz_A 170 NSLNLRGNN------------LASK--------------------NCAELAKFLASIPASVTSLDLSANLLG-------- 209 (362)
T ss_dssp CEEECTTSC------------GGGS--------------------CHHHHHHHHHTSCTTCCEEECTTSCGG--------
T ss_pred cEeeecCCC------------Cchh--------------------hHHHHHHHHHhCCCCCCEEECCCCCCC--------
Confidence 766432211 0000 001111123333 47888888877533
Q ss_pred hhhHHHHhhcCCC-CCCCceEEEeecCCCCCCc----ccccccccccEEEEeCCCCCC-------C-CCCCCCCCCccee
Q 002044 759 EANHEAVCEALQP-PPNLESLQITGFKGRTLML----SWIVSLNKLKKLRLLFCDKCE-------V-MPALGILPSLEVL 825 (976)
Q Consensus 759 ~~~~~~~~~~l~~-~~~L~~L~L~~~~~~~~~p----~~~~~l~~L~~L~L~~~~~~~-------~-l~~l~~L~~L~~L 825 (976)
......+...+.. +++|+.|+|++|.+....+ ..+..+++|+.|+|++|.... . ...+..+++|+.|
T Consensus 210 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~L 289 (362)
T 3goz_A 210 LKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILV 289 (362)
T ss_dssp GSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEE
T ss_pred hhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEE
Confidence 1122334444433 4689999999998776522 233567899999999986211 1 1246788899999
Q ss_pred eccccc
Q 002044 826 KIRFMK 831 (976)
Q Consensus 826 ~L~~~~ 831 (976)
++++|.
T Consensus 290 dL~~N~ 295 (362)
T 3goz_A 290 DKNGKE 295 (362)
T ss_dssp CTTSCB
T ss_pred ecCCCc
Confidence 999886
No 117
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.14 E-value=4.7e-10 Score=115.08 Aligned_cols=180 Identities=15% Similarity=0.068 Sum_probs=114.8
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCCCcc
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAPNLG 253 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~~~~ 253 (976)
.+++|++..++++.+++... ..+.+.|+|.+|+|||++|+.+++. .........|+.+ . .....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~--~~~~~~~~~~~~~------~--~~~~~ 80 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEM------N--ASDER 80 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHH--HHGGGGGGGEEEE------E--TTCTT
T ss_pred HHHcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--HhccccccceEEe------c--ccccc
Confidence 46899999999999999743 2234899999999999999999873 3222111122211 0 01111
Q ss_pred cHHHHHHHHHHHH------cCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCchhh-hhc-cCCcceEecCC
Q 002044 254 ELNSLLLRIDAFI------ARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKETV-ARM-MESTDVIFIKE 325 (976)
Q Consensus 254 ~~~~~~~~l~~~l------~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v-~~~-~~~~~~~~l~~ 325 (976)
........+.... .+++.+||+||++.-.....+.+...+.....+.++|+||+.... ... ......+.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~ 160 (226)
T 2chg_A 81 GIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKP 160 (226)
T ss_dssp CHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred ChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCC
Confidence 2233333344433 257889999999654444555666666655667889999876531 111 12334899999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHHh
Q 002044 326 LSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTIG 373 (976)
Q Consensus 326 L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 373 (976)
++.++..+++...+........ .+..+.|++.++|.|..+..+.
T Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 161 VPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999887642221111 3445668899999998654443
No 118
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.13 E-value=1.7e-10 Score=123.49 Aligned_cols=137 Identities=19% Similarity=0.297 Sum_probs=86.2
Q ss_pred CceeEEEEEccCCCCCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccC
Q 002044 528 EKLRHLMLVLGYKNSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKK 607 (976)
Q Consensus 528 ~~~r~l~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~ 607 (976)
.+++.+.+..+....++ .+..+++|++|++++|.+..... +.++++|++|+++ ++.+..+|. ++.
T Consensus 46 ~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-------l~~l~~L~~L~l~------~n~l~~~~~-l~~ 110 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-------LANLKNLGWLFLD------ENKVKDLSS-LKD 110 (291)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-------GTTCTTCCEEECC------SSCCCCGGG-GTT
T ss_pred CcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-------cccCCCCCEEECC------CCcCCCChh-hcc
Confidence 34556666555555443 35566777777777776543221 5667777777777 444545443 677
Q ss_pred CCccceecC--ccccccCccccccCCccEEecCCCCCCcccchhhcccCCCcEEEecccccccCcccccCCCCCCcCC
Q 002044 608 LRHLRYLKL--YLVEKLPETCCELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLEYMPKGIERLTSLRTLS 683 (976)
Q Consensus 608 L~~Lr~L~L--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 683 (976)
+++|++|++ +.+..+| .+..+++|++|++++|. +..+ ..++.+++|++|++++|.+..++. +..+++|+.|+
T Consensus 111 l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~ 184 (291)
T 1h6t_A 111 LKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLY 184 (291)
T ss_dssp CTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEE
Confidence 777777777 4555553 46677777777777775 5555 456777777777777777766655 66666666654
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.12 E-value=1.3e-10 Score=119.54 Aligned_cols=139 Identities=30% Similarity=0.499 Sum_probs=110.6
Q ss_pred EEEEccCCCCCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCcc-ccCCCcc
Q 002044 533 LMLVLGYKNSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKG-IKKLRHL 611 (976)
Q Consensus 533 l~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~-i~~L~~L 611 (976)
+.........+|..+ .++|++|++++|.+..... ..|.++++|++|+|+ ++.+..+|.. +..+.+|
T Consensus 24 v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~-----~~~~~l~~L~~L~L~------~N~l~~i~~~~~~~l~~L 90 (229)
T 3e6j_A 24 VDCRSKRHASVPAGI--PTNAQILYLHDNQITKLEP-----GVFDSLINLKELYLG------SNQLGALPVGVFDSLTQL 90 (229)
T ss_dssp EECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCT-----TTTTTCTTCCEEECC------SSCCCCCCTTTTTTCTTC
T ss_pred eEccCCCcCccCCCC--CCCCCEEEcCCCccCccCH-----HHhhCccCCcEEECC------CCCCCCcChhhcccCCCc
Confidence 343344445555544 3889999999998765433 237889999999999 6667778754 6899999
Q ss_pred ceecC--ccccccCcc-ccccCCccEEecCCCCCCcccchhhcccCCCcEEEecccccccCccc-ccCCCCCCcCCce
Q 002044 612 RYLKL--YLVEKLPET-CCELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLEYMPKG-IERLTSLRTLSEF 685 (976)
Q Consensus 612 r~L~L--~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~ 685 (976)
++|+| +.+..+|.. +..+.+|++|++++|. +..+|..+..+++|++|++++|.+..+|.. +..+++|+.|.+.
T Consensus 91 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 91 TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CEEECCCCcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 99999 678888765 6889999999999997 889999999999999999999999998854 6778888877643
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.12 E-value=9.2e-11 Score=141.69 Aligned_cols=153 Identities=18% Similarity=0.159 Sum_probs=94.1
Q ss_pred CceeEEEEEccCCCCCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccC
Q 002044 528 EKLRHLMLVLGYKNSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKK 607 (976)
Q Consensus 528 ~~~r~l~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~ 607 (976)
..++++.+..+.....+..+....+|+.+.+........ ....++..+..++.|++|+|+ ++.+..+|..+.+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n-~~~~~~~~~~~l~~L~~L~Ls------~n~l~~l~~~~~~ 245 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIEN-RMVMPKDSKYDDQLWHALDLS------NLQIFNISANIFK 245 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECT------TSCCSCCCGGGGG
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccc-ceecChhhhccCCCCcEEECC------CCCCCCCChhhcC
Confidence 456677776555544333333333333333322211110 112345668899999999999 6677789999999
Q ss_pred CCccceecC--ccccccCccccccCCccEEecCCCCCCcccchhhcccCCCcEEEecccccccCcccccCCCCCCcCCce
Q 002044 608 LRHLRYLKL--YLVEKLPETCCELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLEYMPKGIERLTSLRTLSEF 685 (976)
Q Consensus 608 L~~Lr~L~L--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~ 685 (976)
+.+|++|+| +.+..+|..+++|.+|++|+|++|. +..+|..++.|++|++|+|++|.+..+|..|+.+++|+.|++.
T Consensus 246 l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp CCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECT
T ss_pred CCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCC
Confidence 999999999 6788999999999999999999998 8899999999999999999999999999999999999998765
Q ss_pred EEe
Q 002044 686 VVV 688 (976)
Q Consensus 686 ~~~ 688 (976)
.+.
T Consensus 325 ~N~ 327 (727)
T 4b8c_D 325 GNP 327 (727)
T ss_dssp TSC
T ss_pred CCc
Confidence 443
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.11 E-value=1.1e-10 Score=135.74 Aligned_cols=38 Identities=11% Similarity=-0.122 Sum_probs=28.7
Q ss_pred CCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCC
Q 002044 774 NLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEV 812 (976)
Q Consensus 774 ~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~ 812 (976)
.|+.|+|++|.+..+ |.++..+++|+.|+|++|.....
T Consensus 208 ~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 208 TEIFFRCRENRITHI-PENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp CCEEEECCSSCCCCC-CGGGGGSCTTEEEECCSSSCCHH
T ss_pred cceEEecCCCcceec-CHHHhcCCCCCEEEeeCCcCCCc
Confidence 458888888887776 77777788888888888865443
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.08 E-value=1.4e-10 Score=113.02 Aligned_cols=126 Identities=24% Similarity=0.291 Sum_probs=82.7
Q ss_pred cCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccc-cCccc
Q 002044 550 ARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEK-LPETC 626 (976)
Q Consensus 550 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~-lp~~i 626 (976)
.++|+.|++++|.+.... ++..+..+++|++|+++ ++.+..+ ..++.+++|++|++ +.+.. +|..+
T Consensus 23 ~~~L~~L~l~~n~l~~~~----i~~~~~~l~~L~~L~l~------~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 91 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGK----IEGLTAEFVNLEFLSLI------NVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLA 91 (168)
T ss_dssp TTSCSEEECCSCBCBTTB----CSSCCGGGGGCCEEEEE------SSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred cccCCEEECCCCCCChhh----HHHHHHhCCCCCEEeCc------CCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHH
Confidence 356777777777654111 12225666777777777 4444444 56677777777777 45555 56666
Q ss_pred cccCCccEEecCCCCCCcccc--hhhcccCCCcEEEecccccccCcc----cccCCCCCCcCCceEE
Q 002044 627 CELLNLQTLNMCGSPGLKRLP--QGIGKLINLRHLMFEVDYLEYMPK----GIERLTSLRTLSEFVV 687 (976)
Q Consensus 627 ~~L~~L~~L~l~~~~~l~~lp--~~i~~l~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~~~~~ 687 (976)
.++++|++|++++|. +..+| ..+..+++|++|++++|.+..+|. .+..+++|+.|++..+
T Consensus 92 ~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 92 EKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp HHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred hhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 667777777777775 66665 567777777777777777777765 5677777777765554
No 123
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.06 E-value=2.9e-10 Score=116.02 Aligned_cols=137 Identities=23% Similarity=0.318 Sum_probs=105.2
Q ss_pred EEccCCCCCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCccc-CccccCCCccce
Q 002044 535 LVLGYKNSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEI-PKGIKKLRHLRY 613 (976)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~l-p~~i~~L~~Lr~ 613 (976)
........+|..+. ++|+.|++++|.+..... ..|..+++|++|+|+ ++.+..+ |..+.++.+|++
T Consensus 18 c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~-----~~~~~l~~L~~L~Ls------~N~i~~~~~~~~~~l~~L~~ 84 (220)
T 2v9t_B 18 CRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPP-----GAFSPYKKLRRIDLS------NNQISELAPDAFQGLRSLNS 84 (220)
T ss_dssp CTTSCCSSCCSSCC--TTCCEEECCSSCCCEECT-----TSSTTCTTCCEEECC------SSCCCEECTTTTTTCSSCCE
T ss_pred cCCCCcCcCCCccC--cCCCEEECCCCcCCCcCH-----hHhhCCCCCCEEECC------CCcCCCcCHHHhhCCcCCCE
Confidence 33344445554433 689999999998754332 237888999999999 6666666 678899999999
Q ss_pred ecC--ccccccCcc-ccccCCccEEecCCCCCCccc-chhhcccCCCcEEEecccccccCccc-ccCCCCCCcCCce
Q 002044 614 LKL--YLVEKLPET-CCELLNLQTLNMCGSPGLKRL-PQGIGKLINLRHLMFEVDYLEYMPKG-IERLTSLRTLSEF 685 (976)
Q Consensus 614 L~L--~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~l-p~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~ 685 (976)
|+| +.+..+|.. +..+++|++|+|++|. +..+ |..+..+++|++|++++|.+..+|.. +..+++|+.|++.
T Consensus 85 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 85 LVLYGNKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred EECCCCcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeC
Confidence 999 678888875 5789999999999997 6666 56688999999999999999888864 7778888877643
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.06 E-value=1.9e-10 Score=111.99 Aligned_cols=133 Identities=19% Similarity=0.093 Sum_probs=104.0
Q ss_pred ccCceeEEEEEccCCC--CCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcc-cC
Q 002044 526 SQEKLRHLMLVLGYKN--SFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNE-IP 602 (976)
Q Consensus 526 ~~~~~r~l~~~~~~~~--~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~-lp 602 (976)
.+.+++++.+..+... .++..+..+++|++|++++|.+... ..+..+++|++|+++ ++.+.. +|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~l~~L~~L~Ls------~N~l~~~~~ 88 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-------SNLPKLPKLKKLELS------ENRIFGGLD 88 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-------SSCCCCSSCCEEEEE------SCCCCSCCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-------hhhccCCCCCEEECc------CCcCchHHH
Confidence 4567888888888776 6666677888999999998886543 227788899999998 555555 66
Q ss_pred ccccCCCccceecC--ccccccC--ccccccCCccEEecCCCCCCcccch----hhcccCCCcEEEecccccccCccc
Q 002044 603 KGIKKLRHLRYLKL--YLVEKLP--ETCCELLNLQTLNMCGSPGLKRLPQ----GIGKLINLRHLMFEVDYLEYMPKG 672 (976)
Q Consensus 603 ~~i~~L~~Lr~L~L--~~~~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~----~i~~l~~L~~L~l~~~~l~~lp~~ 672 (976)
..+.++++|++|++ +.+..+| ..+..+++|++|++++|. +..+|. .+..+++|++|+++.+.+..+|..
T Consensus 89 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 89 MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp HHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred HHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 66777889999999 6677776 678888999999999887 777776 678889999999888777777753
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.05 E-value=1.3e-10 Score=110.63 Aligned_cols=123 Identities=27% Similarity=0.334 Sum_probs=94.7
Q ss_pred cCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccc-cCccc
Q 002044 550 ARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEK-LPETC 626 (976)
Q Consensus 550 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~-lp~~i 626 (976)
.++|+.|++++|.+.... ++..+..+++|++|+++ ++.+..+ ..++.+++|++|++ +.+.. +|..+
T Consensus 16 ~~~l~~L~l~~n~l~~~~----~~~~~~~l~~L~~L~l~------~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 84 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGK----LEGLTDEFEELEFLSTI------NVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLA 84 (149)
T ss_dssp GGGCSEEECTTCBCBTTB----CCSCCTTCTTCCEEECT------TSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHH
T ss_pred CccCeEEEccCCcCChhH----HHHHHhhcCCCcEEECc------CCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHh
Confidence 467888888888765111 12236788889999998 4555555 67888899999999 56666 77777
Q ss_pred cccCCccEEecCCCCCCcccc--hhhcccCCCcEEEecccccccCcc----cccCCCCCCcCCc
Q 002044 627 CELLNLQTLNMCGSPGLKRLP--QGIGKLINLRHLMFEVDYLEYMPK----GIERLTSLRTLSE 684 (976)
Q Consensus 627 ~~L~~L~~L~l~~~~~l~~lp--~~i~~l~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~~ 684 (976)
+.+++|++|++++|. +..+| ..++.+++|++|++++|.+..+|. .++.+++|+.|++
T Consensus 85 ~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 85 EKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp HHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred hhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 789999999999987 77765 778899999999998888888876 5788888888764
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.05 E-value=2.8e-10 Score=111.81 Aligned_cols=128 Identities=19% Similarity=0.168 Sum_probs=104.5
Q ss_pred cccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccccC
Q 002044 546 SIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLP 623 (976)
Q Consensus 546 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp 623 (976)
.+.++.+|+.|++++|.+... +.+....++|++|+++ ++.+..+ ..++.+++|++|++ +.+..+|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i------~~~~~~~~~L~~L~Ls------~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~ 80 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI------ENLGATLDQFDAIDFS------DNEIRKL-DGFPLLRRLKTLLVNNNRICRIG 80 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC------CCGGGGTTCCSEEECC------SSCCCEE-CCCCCCSSCCEEECCSSCCCEEC
T ss_pred hcCCcCCceEEEeeCCCCchh------HHhhhcCCCCCEEECC------CCCCCcc-cccccCCCCCEEECCCCcccccC
Confidence 345678999999999987542 2223334499999999 5666666 67889999999999 6788888
Q ss_pred ccc-cccCCccEEecCCCCCCcccch--hhcccCCCcEEEecccccccCccc----ccCCCCCCcCCceEE
Q 002044 624 ETC-CELLNLQTLNMCGSPGLKRLPQ--GIGKLINLRHLMFEVDYLEYMPKG----IERLTSLRTLSEFVV 687 (976)
Q Consensus 624 ~~i-~~L~~L~~L~l~~~~~l~~lp~--~i~~l~~L~~L~l~~~~l~~lp~~----i~~l~~L~~L~~~~~ 687 (976)
+.+ ..+++|++|++++|. +..+|. .+..+++|++|++++|.+..+|.. ++.+++|+.|++..+
T Consensus 81 ~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 81 EGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp SCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred cchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 665 899999999999997 888887 789999999999999999999875 889999999986554
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.02 E-value=5e-10 Score=114.34 Aligned_cols=141 Identities=19% Similarity=0.240 Sum_probs=106.7
Q ss_pred EEEEEccCCCCCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCc-cccCCCc
Q 002044 532 HLMLVLGYKNSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPK-GIKKLRH 610 (976)
Q Consensus 532 ~l~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~-~i~~L~~ 610 (976)
.+.+..+....+|..+ ...++.|++++|.+...... ..|.++++|++|+|+ ++.+..++. .+..+.+
T Consensus 15 ~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~----~~~~~l~~L~~L~L~------~N~i~~i~~~~~~~l~~ 82 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEAT----GIFKKLPQLRKINFS------NNKITDIEEGAFEGASG 82 (220)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCC----CCGGGCTTCCEEECC------SSCCCEECTTTTTTCTT
T ss_pred EeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCch----hhhccCCCCCEEECC------CCcCCEECHHHhCCCCC
Confidence 4555555555556543 34678999999887553221 226888999999998 666777764 7889999
Q ss_pred cceecC--ccccccCc-cccccCCccEEecCCCCCCccc-chhhcccCCCcEEEecccccccC-cccccCCCCCCcCCce
Q 002044 611 LRYLKL--YLVEKLPE-TCCELLNLQTLNMCGSPGLKRL-PQGIGKLINLRHLMFEVDYLEYM-PKGIERLTSLRTLSEF 685 (976)
Q Consensus 611 Lr~L~L--~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~l-p~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~~~ 685 (976)
|++|+| +.+..+|. .+..+++|++|+|++|. +..+ |..+..+++|++|++++|.+..+ |..+..+++|+.|++.
T Consensus 83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 999999 67777775 48889999999999998 6665 66788999999999988888887 5678888888887643
No 128
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.02 E-value=1e-09 Score=115.36 Aligned_cols=142 Identities=18% Similarity=0.171 Sum_probs=112.6
Q ss_pred cCceeEEEEEccCCCCCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCcccc
Q 002044 527 QEKLRHLMLVLGYKNSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIK 606 (976)
Q Consensus 527 ~~~~r~l~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~ 606 (976)
..+++.+.+..+....++ .+..+++|++|++++|.+..... +.++++|++|+|+ ++.+..+|....
T Consensus 40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-------l~~l~~L~~L~L~------~N~l~~l~~~~~ 105 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-------LKDLTKLEELSVN------RNRLKNLNGIPS 105 (263)
T ss_dssp HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-------GTTCSSCCEEECC------SSCCSCCTTCCC
T ss_pred cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-------hccCCCCCEEECC------CCccCCcCcccc
Confidence 456778888777777655 67788999999999998755322 7889999999999 566666665333
Q ss_pred CCCccceecC--ccccccCccccccCCccEEecCCCCCCcccchhhcccCCCcEEEecccccccCcccccCCCCCCcCCc
Q 002044 607 KLRHLRYLKL--YLVEKLPETCCELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLEYMPKGIERLTSLRTLSE 684 (976)
Q Consensus 607 ~L~~Lr~L~L--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~ 684 (976)
.+|++|++ +.+..+| .+..+++|++|++++|. +..+| .++.+++|++|++++|.+..+ ..+..+++|+.|++
T Consensus 106 --~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l 179 (263)
T 1xeu_A 106 --ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDL 179 (263)
T ss_dssp --SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEE
T ss_pred --CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeC
Confidence 88999999 5677775 58899999999999997 88886 688999999999988888887 66888888888876
Q ss_pred eEEe
Q 002044 685 FVVV 688 (976)
Q Consensus 685 ~~~~ 688 (976)
..+.
T Consensus 180 ~~N~ 183 (263)
T 1xeu_A 180 TGQK 183 (263)
T ss_dssp EEEE
T ss_pred CCCc
Confidence 6654
No 129
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.98 E-value=1.3e-09 Score=110.21 Aligned_cols=123 Identities=33% Similarity=0.538 Sum_probs=93.3
Q ss_pred cCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCcc-ccCCCccceecC--ccccccCcc-
Q 002044 550 ARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKG-IKKLRHLRYLKL--YLVEKLPET- 625 (976)
Q Consensus 550 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~-i~~L~~Lr~L~L--~~~~~lp~~- 625 (976)
.++|++|++++|.+.... +..|.++++|++|+++ ++.+..+|.. +..+.+|++|++ +.+..+|..
T Consensus 27 ~~~l~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~------~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 95 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLP-----NGVFDELTSLTQLYLG------GNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV 95 (208)
T ss_dssp CTTCSEEECCSSCCCCCC-----TTTTTTCTTCSEEECC------SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCcEEEcCCCccCcCC-----hhhhcccccCcEEECC------CCccCccChhhcCCCCCcCEEECCCCcCCccCHhH
Confidence 467889999888765432 2236788899999998 5566666654 578889999999 567777754
Q ss_pred ccccCCccEEecCCCCCCcccchh-hcccCCCcEEEecccccccCccc-ccCCCCCCcCCc
Q 002044 626 CCELLNLQTLNMCGSPGLKRLPQG-IGKLINLRHLMFEVDYLEYMPKG-IERLTSLRTLSE 684 (976)
Q Consensus 626 i~~L~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~ 684 (976)
+.++++|++|++++|. +..+|.. +..+++|++|+++.|.+..+|.. +..+++|+.|++
T Consensus 96 ~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 155 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 155 (208)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred hcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEe
Confidence 6788899999998887 7777665 68889999999988888887765 567777777653
No 130
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.97 E-value=2.4e-09 Score=109.96 Aligned_cols=129 Identities=21% Similarity=0.236 Sum_probs=93.7
Q ss_pred CCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCCC--CCCCCCcceeeccccccceEeCccccCCCcCccc
Q 002044 772 PPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMPA--LGILPSLEVLKIRFMKSVKRVGNEFLGTEISDHI 849 (976)
Q Consensus 772 ~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l 849 (976)
+++|+.|+|++|.+..+.|..+..+++|+.|+|++|.. ..++. ++.+++|++|+|++|. ++.++...+
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~-------- 108 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVF-------- 108 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTT--------
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCc-CCccChhHh--------
Confidence 47899999999988887677888889999999999865 44443 6788999999998875 544443221
Q ss_pred ccccCCCCCCCCCccCccCCccceeeecccccccccccCCCccccCCCcceEeeecCCCCCCCC-cCCCCCCCCCeEEEc
Q 002044 850 HIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNSLP-DQLLQSTTLEELEII 928 (976)
Q Consensus 850 ~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp-~~l~~l~~L~~L~l~ 928 (976)
..+++|+.|.+.+. .+. ..+..+..+++|+.|++++|. +..+| ..+..+++|+.|++.
T Consensus 109 ----------------~~l~~L~~L~Ls~N-~l~---~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 109 ----------------DRLVHLKELFMCCN-KLT---ELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp ----------------TTCTTCCEEECCSS-CCC---SCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECT
T ss_pred ----------------CcchhhCeEeccCC-ccc---ccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEee
Confidence 14677777777652 222 334446678888888888875 77776 446778888888888
Q ss_pred cCc
Q 002044 929 RCP 931 (976)
Q Consensus 929 ~c~ 931 (976)
+||
T Consensus 168 ~N~ 170 (229)
T 3e6j_A 168 GNP 170 (229)
T ss_dssp TSC
T ss_pred CCC
Confidence 885
No 131
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.96 E-value=3.3e-09 Score=115.58 Aligned_cols=179 Identities=15% Similarity=0.169 Sum_probs=113.9
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhc-ccc-cceeehHHHHHHHhCCCCC
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVIS-NFE-KRMWNCESIIEALEGFAPN 251 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~f~-~~~wv~~~~~~~l~~~~~~ 251 (976)
.+++|++..++.+.+++... ..+.+.|+|++|+||||+|+.+++. ... .+. ..+++.. .+
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~----------~~ 82 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHE--LLGRSYADGVLELNA----------SD 82 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHH--HHGGGHHHHEEEECT----------TS
T ss_pred HHHHCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCCEEEecC----------cc
Confidence 46999999999999998742 2333899999999999999999883 221 111 1222211 11
Q ss_pred cccHHHHHHHHHHHH-------cCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCchh-hhhc-cCCcceEe
Q 002044 252 LGELNSLLLRIDAFI-------ARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKET-VARM-MESTDVIF 322 (976)
Q Consensus 252 ~~~~~~~~~~l~~~l-------~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~-~~~~~~~~ 322 (976)
....+.....+.... .+++.++|+||++.-....++.+...+.....++++|+||+... +... ......+.
T Consensus 83 ~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~ 162 (323)
T 1sxj_B 83 DRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILR 162 (323)
T ss_dssp CCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred ccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEe
Confidence 112333333333333 34588999999965444455566666655556778888887543 2111 13345899
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCch-HHHHHhh
Q 002044 323 IKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPL-AAKTIGS 374 (976)
Q Consensus 323 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~ 374 (976)
+.+++.++..+++...+...+.... .+..+.|++.|+|.|. |+..+..
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 163 YSKLSDEDVLKRLLQIIKLEDVKYT----NDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999999999887632221111 3445679999999995 4444443
No 132
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.96 E-value=1.9e-09 Score=109.14 Aligned_cols=157 Identities=17% Similarity=0.127 Sum_probs=107.6
Q ss_pred CCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCCC-CCCCCCcceeeccccccceEeCccccCCCcCcccc
Q 002044 772 PPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMPA-LGILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIH 850 (976)
Q Consensus 772 ~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~ 850 (976)
+++|+.|+++++.+..+.+..+..+++|+.|+|++|......+. +..+++|++|+|++|. ++.++...+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~--------- 96 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVF--------- 96 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTT---------
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHh---------
Confidence 45788888888887777455667888888888888854433322 6788888888888875 443332211
Q ss_pred cccCCCCCCCCCccCccCCccceeeecccccccccccCCCccccCCCcceEeeecCCCCCCCCcC-CCCCCCCCeEEEcc
Q 002044 851 IQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNSLPDQ-LLQSTTLEELEIIR 929 (976)
Q Consensus 851 l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~-l~~l~~L~~L~l~~ 929 (976)
..+++|+.|.+.+. .+. ...+..+..+++|+.|++++|. +..+|.. +..+++|+.|++++
T Consensus 97 ---------------~~l~~L~~L~L~~N-~l~--~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 97 ---------------DKLTQLKELALNTN-QLQ--SLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp ---------------TTCTTCCEEECCSS-CCC--CCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred ---------------cCccCCCEEEcCCC-cCc--ccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecC
Confidence 24667777777652 222 2223335678999999999986 6777654 67789999999999
Q ss_pred CcchHHhhccCCCCCcccccCCCceeecccccccCcchhh
Q 002044 930 CPILEERFKKDTGEDWSKITHIPKIKIHGEYVQGSPPLLK 969 (976)
Q Consensus 930 c~~l~~~~~~~~~~~~~~i~~l~~l~~~~n~~~~~~~~~~ 969 (976)
|+-. ...+.+..+++..|.++|.+|...
T Consensus 158 N~~~------------~~~~~l~~L~~~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 158 NPWD------------CTCPGIRYLSEWINKHSGVVRNSA 185 (208)
T ss_dssp CCBC------------CCTTTTHHHHHHHHHCTTTBBCTT
T ss_pred CCee------------cCCCCHHHHHHHHHhCCceeeccC
Confidence 8321 134567778888888888877543
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.92 E-value=1.9e-10 Score=134.55 Aligned_cols=97 Identities=20% Similarity=0.250 Sum_probs=80.7
Q ss_pred CcceEEecCcccccCCCCcccCccccCCCccceecC--ccccccCccccccCCccEEecCCCCCCcccchhhcccCCCcE
Q 002044 581 GLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLPETCCELLNLQTLNMCGSPGLKRLPQGIGKLINLRH 658 (976)
Q Consensus 581 ~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~ 658 (976)
.|++|+|+ ++.+..+|. ++.+.+|++|+| +.+..+|..+++|++|++|+|++|. +..+| .++.+++|++
T Consensus 442 ~L~~L~Ls------~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~ 512 (567)
T 1dce_A 442 DVRVLHLA------HKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQE 512 (567)
T ss_dssp TCSEEECT------TSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCE
T ss_pred CceEEEec------CCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcE
Confidence 58888888 666777876 888889999998 6778888888899999999998887 77788 7888999999
Q ss_pred EEecccccccC--cccccCCCCCCcCCceE
Q 002044 659 LMFEVDYLEYM--PKGIERLTSLRTLSEFV 686 (976)
Q Consensus 659 L~l~~~~l~~l--p~~i~~l~~L~~L~~~~ 686 (976)
|++++|.+..+ |..++.+++|+.|++..
T Consensus 513 L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp EECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred EECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence 99988888888 78888888888886443
No 134
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.89 E-value=5.5e-09 Score=106.52 Aligned_cols=131 Identities=12% Similarity=0.174 Sum_probs=90.7
Q ss_pred CCCCceEEEeecCCCCCCc-ccccccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccccccceEeCccccCCCcCccc
Q 002044 772 PPNLESLQITGFKGRTLML-SWIVSLNKLKKLRLLFCDKCEVMP-ALGILPSLEVLKIRFMKSVKRVGNEFLGTEISDHI 849 (976)
Q Consensus 772 ~~~L~~L~L~~~~~~~~~p-~~~~~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l 849 (976)
++.++.|++++|.+..+.| ..+..+++|+.|+|++|......+ .++.+++|++|+|++|. ++.++...+
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-------- 101 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR-LENVQHKMF-------- 101 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCGGGG--------
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc-cCccCHhHh--------
Confidence 3467888888888776633 346788888888888886443333 47888888888888876 444333211
Q ss_pred ccccCCCCCCCCCccCccCCccceeeecccccccccccCCCccccCCCcceEeeecCCCCCCC-CcCCCCCCCCCeEEEc
Q 002044 850 HIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNSL-PDQLLQSTTLEELEII 928 (976)
Q Consensus 850 ~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l-p~~l~~l~~L~~L~l~ 928 (976)
..+++|+.|.+.+ +......+..+..+++|+.|++++|. ++.+ |..+..+++|+.|+++
T Consensus 102 ----------------~~l~~L~~L~Ls~---N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 102 ----------------KGLESLKTLMLRS---NRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp ----------------TTCSSCCEEECTT---SCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECC
T ss_pred ----------------cCCcCCCEEECCC---CcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEec
Confidence 1466777777665 22333334556788899999999876 5555 6778888899999998
Q ss_pred cCc
Q 002044 929 RCP 931 (976)
Q Consensus 929 ~c~ 931 (976)
+|+
T Consensus 162 ~N~ 164 (220)
T 2v70_A 162 ANP 164 (220)
T ss_dssp SCC
T ss_pred CcC
Confidence 885
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.89 E-value=2.3e-09 Score=125.22 Aligned_cols=116 Identities=23% Similarity=0.252 Sum_probs=98.5
Q ss_pred ceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccccCcccccc
Q 002044 552 KLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLPETCCEL 629 (976)
Q Consensus 552 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp~~i~~L 629 (976)
.|++|++++|.+... +. +..+++|++|+|+ ++.+..+|..++++++|++|+| +.+..+| .+++|
T Consensus 442 ~L~~L~Ls~n~l~~l------p~-~~~l~~L~~L~Ls------~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l 507 (567)
T 1dce_A 442 DVRVLHLAHKDLTVL------CH-LEQLLLVTHLDLS------HNRLRALPPALAALRCLEVLQASDNALENVD-GVANL 507 (567)
T ss_dssp TCSEEECTTSCCSSC------CC-GGGGTTCCEEECC------SSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTC
T ss_pred CceEEEecCCCCCCC------cC-ccccccCcEeecC------cccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCC
Confidence 478899999886542 33 7889999999999 6777889999999999999999 6788888 89999
Q ss_pred CCccEEecCCCCCCccc--chhhcccCCCcEEEecccccccCcccccC----CCCCCcC
Q 002044 630 LNLQTLNMCGSPGLKRL--PQGIGKLINLRHLMFEVDYLEYMPKGIER----LTSLRTL 682 (976)
Q Consensus 630 ~~L~~L~l~~~~~l~~l--p~~i~~l~~L~~L~l~~~~l~~lp~~i~~----l~~L~~L 682 (976)
++|++|+|++|. +..+ |..++.+++|++|++++|.+..+|+.+.. +++|+.|
T Consensus 508 ~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 508 PRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp SSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 999999999997 7777 89999999999999999999988875433 6666665
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.89 E-value=9.6e-10 Score=104.59 Aligned_cols=123 Identities=19% Similarity=0.135 Sum_probs=103.1
Q ss_pred ccCceeEEEEEccCCC--CCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcc-cC
Q 002044 526 SQEKLRHLMLVLGYKN--SFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNE-IP 602 (976)
Q Consensus 526 ~~~~~r~l~~~~~~~~--~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~-lp 602 (976)
.+.+++++.+..+... .++..+..+++|+.|++++|.+... ..+..+++|++|+++ ++.+.. +|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~l~~L~~L~Ls------~n~i~~~~~ 81 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-------ANLPKLNKLKKLELS------DNRVSGGLE 81 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-------TTCCCCTTCCEEECC------SSCCCSCTH
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-------hhhhcCCCCCEEECC------CCcccchHH
Confidence 4567888998888776 6677778899999999999987654 227899999999999 566666 77
Q ss_pred ccccCCCccceecC--ccccccC--ccccccCCccEEecCCCCCCcccch----hhcccCCCcEEEec
Q 002044 603 KGIKKLRHLRYLKL--YLVEKLP--ETCCELLNLQTLNMCGSPGLKRLPQ----GIGKLINLRHLMFE 662 (976)
Q Consensus 603 ~~i~~L~~Lr~L~L--~~~~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~----~i~~l~~L~~L~l~ 662 (976)
..++.+++|++|++ +.+..+| ..++.+++|++|++++|. +..+|. .++.+++|++|+++
T Consensus 82 ~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 82 VLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 77888999999999 6777765 789999999999999997 888776 68999999999874
No 137
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.88 E-value=2.2e-08 Score=109.03 Aligned_cols=265 Identities=17% Similarity=0.128 Sum_probs=142.0
Q ss_pred CCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCCCc
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAPNL 252 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~~~ 252 (976)
..+++|++..++.+..++...... ....+.|.|+|++|+|||++|+.+++. ....| .++.. ...
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~i~~~--~~~~~---~~~~~----------~~~ 74 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKAR-KEPLEHLLLFGPPGLGKTTLAHVIAHE--LGVNL---RVTSG----------PAI 74 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHH-CSCCCCCEEECCTTCCCHHHHHHHHHH--HTCCE---EEECT----------TTC
T ss_pred HHHhhCHHHHHHHHHHHHHHHHcc-CCCCCcEEEECCCCCCHHHHHHHHHHH--hCCCE---EEEec----------ccc
Confidence 357999999999988887632210 123356889999999999999999883 32222 22221 011
Q ss_pred ccHHHHHHHHHHHHc---CCceEEEEcCCCCCCccCcHhHHHhhcCCC------------------CCcEEEEEcCchh-
Q 002044 253 GELNSLLLRIDAFIA---RKKFLLILDDVWTDDYSKWEPFRRCLINGH------------------RESRILVTTRKET- 310 (976)
Q Consensus 253 ~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~iivTtR~~~- 310 (976)
.... .+...+. .++.+|++|++..-.......+...+.... ++.++|.||....
T Consensus 75 ~~~~----~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~ 150 (324)
T 1hqc_A 75 EKPG----DLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGL 150 (324)
T ss_dssp CSHH----HHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSS
T ss_pred CChH----HHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCccc
Confidence 1111 2223333 367799999996543333344444433211 2346777666432
Q ss_pred hhhcc-CC-cceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHHhhhhcc------C--C
Q 002044 311 VARMM-ES-TDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTIGSLLRF------K--R 380 (976)
Q Consensus 311 v~~~~-~~-~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~------~--~ 380 (976)
+...+ .. ..++.+.+++.++..+++...+........ .+..+.++++++|.|-.+..+...+.. . -
T Consensus 151 ~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i 226 (324)
T 1hqc_A 151 ITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT----EEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVI 226 (324)
T ss_dssp CSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCC
T ss_pred CCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 21111 12 358999999999999999887643222111 345667999999999877665543321 1 1
Q ss_pred CHHHHHHHHhhhhhhhhhhhhhhhHHHHhhhcCCcHHHHHHHhhhcc-cCCC----------ceeChHHHH----HHHHH
Q 002044 381 TREEWQSILDSEIWQLEEFEKGLLAPLLLSYNDLPTIIKQCFLYCAV-FPKD----------CFLERDELI----KLWMA 445 (976)
Q Consensus 381 ~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~-fp~~----------~~i~~~~li----~~w~a 445 (976)
+.+....++.. +...+..++...+..+..+.- |..+ ..+++..+. ++-+.
T Consensus 227 ~~~~~~~~~~~---------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~ 291 (324)
T 1hqc_A 227 TRERALEALAA---------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIR 291 (324)
T ss_dssp CHHHHHHHHHH---------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHH
T ss_pred CHHHHHHHHHH---------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHH
Confidence 23333333221 112233344433333333221 1111 013333332 24556
Q ss_pred cCcccccC-CchhhHHHHHHHHHH-HHHhcCCccc
Q 002044 446 QGYIVQKG-NKEMEMEMIGEGYFD-YLATRSFFQE 478 (976)
Q Consensus 446 ~g~i~~~~-~~~~~~~~~~~~~~~-~L~~r~ll~~ 478 (976)
.|++.... +... .+.|..|++ ++.+|++||+
T Consensus 292 ~~li~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 292 QGLLKRTPRGRVP--TELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp TTSEEEETTEEEE--CHHHHHHTTCCCCC------
T ss_pred hcchhcCCcccee--cHHHHHHHhcCCCCCCCCCC
Confidence 78886443 3334 677888887 8888888874
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.85 E-value=2.2e-09 Score=105.39 Aligned_cols=128 Identities=20% Similarity=0.165 Sum_probs=106.2
Q ss_pred ccCceeEEEEEccCCCCCccccccc-CceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCcc
Q 002044 526 SQEKLRHLMLVLGYKNSFPVSIFYA-RKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKG 604 (976)
Q Consensus 526 ~~~~~r~l~~~~~~~~~~~~~~~~~-~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~ 604 (976)
...+++.+.+..+....++. +..+ ++|++|++++|.+... ..+..+++|++|+++ ++.+..+|..
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-------~~l~~l~~L~~L~Ls------~N~l~~~~~~ 82 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-------DGFPLLRRLKTLLVN------NNRICRIGEG 82 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-------CCCCCCSSCCEEECC------SSCCCEECSC
T ss_pred CcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-------cccccCCCCCEEECC------CCcccccCcc
Confidence 45678889988888777643 4444 4999999999987653 127889999999999 6778888866
Q ss_pred c-cCCCccceecC--ccccccCc--cccccCCccEEecCCCCCCcccchh----hcccCCCcEEEeccccccc
Q 002044 605 I-KKLRHLRYLKL--YLVEKLPE--TCCELLNLQTLNMCGSPGLKRLPQG----IGKLINLRHLMFEVDYLEY 668 (976)
Q Consensus 605 i-~~L~~Lr~L~L--~~~~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~----i~~l~~L~~L~l~~~~l~~ 668 (976)
+ +.+++|++|++ +.+..+|. .+..+++|++|++++|. +..+|.. ++.+++|++|+++.+....
T Consensus 83 ~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 83 LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp HHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred hhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 5 89999999999 67888887 89999999999999998 8888885 8999999999997776553
No 139
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.85 E-value=2.4e-09 Score=118.41 Aligned_cols=129 Identities=16% Similarity=0.178 Sum_probs=68.9
Q ss_pred CCCceEEEeecCCCCCCccccc-ccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccccccceEeCccccCCCcCcccc
Q 002044 773 PNLESLQITGFKGRTLMLSWIV-SLNKLKKLRLLFCDKCEVMP-ALGILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIH 850 (976)
Q Consensus 773 ~~L~~L~L~~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~ 850 (976)
+.++.|+|++|.+..+.+.++. .+++|+.|+|++|......+ .+..+++|++|+|++|. ++.++...+.
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~-------- 109 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFS-------- 109 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTT--------
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhC--------
Confidence 3566777777766665445555 66777777777764333222 36667777777777665 4444332111
Q ss_pred cccCCCCCCCCCccCccCCccceeeecccccccccccCCCccccCCCcceEeeecCCCCCCCCcCC----CCCCCCCeEE
Q 002044 851 IQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNSLPDQL----LQSTTLEELE 926 (976)
Q Consensus 851 l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l----~~l~~L~~L~ 926 (976)
.+++|+.|.+.+ +......+..+..+++|+.|++++|. +..+|..+ ..+++|+.|+
T Consensus 110 ----------------~l~~L~~L~L~~---N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 110 ----------------DLQALEVLLLYN---NHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp ----------------TCTTCCEEECCS---SCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEE
T ss_pred ----------------CCcCCCEEECCC---CcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEE
Confidence 244444444443 22222223334556666666666654 55555433 3456666666
Q ss_pred EccC
Q 002044 927 IIRC 930 (976)
Q Consensus 927 l~~c 930 (976)
+++|
T Consensus 170 L~~N 173 (361)
T 2xot_A 170 LSSN 173 (361)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6665
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.83 E-value=2.5e-09 Score=129.16 Aligned_cols=114 Identities=25% Similarity=0.274 Sum_probs=93.6
Q ss_pred cccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccc
Q 002044 544 PVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEK 621 (976)
Q Consensus 544 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~ 621 (976)
+..+..+++|+.|++++|.+.... .. +.++++|++|+|+ ++.+..+|..+++|.+|++|+| +.+..
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~-----~~-~~~l~~L~~L~Ls------~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ 284 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNIS-----AN-IFKYDFLTRLYLN------GNSLTELPAEIKNLSNLRVLDLSHNRLTS 284 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCC-----GG-GGGCCSCSCCBCT------TSCCSCCCGGGGGGTTCCEEECTTSCCSS
T ss_pred hhhhccCCCCcEEECCCCCCCCCC-----hh-hcCCCCCCEEEee------CCcCcccChhhhCCCCCCEEeCcCCcCCc
Confidence 455677899999999999865321 11 4589999999999 6677789999999999999999 67889
Q ss_pred cCccccccCCccEEecCCCCCCcccchhhcccCCCcEEEecccccccCc
Q 002044 622 LPETCCELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMFEVDYLEYMP 670 (976)
Q Consensus 622 lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lp 670 (976)
+|..+++|.+|++|+|++|. +..+|..|++|++|++|+|++|.+...+
T Consensus 285 lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 285 LPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQF 332 (727)
T ss_dssp CCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHH
T ss_pred cChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCC
Confidence 99999999999999999997 8899999999999999999888887543
No 141
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.82 E-value=6.4e-09 Score=115.02 Aligned_cols=139 Identities=22% Similarity=0.257 Sum_probs=85.6
Q ss_pred EEEEccCCCCCcccccccCceeEEEecCcccchhhhHHHHHHHHh-cCCCcceEEecCcccccCCCCcccC-ccccCCCc
Q 002044 533 LMLVLGYKNSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFD-QLTGLRVLRIEGMKSLIGSGTNEIP-KGIKKLRH 610 (976)
Q Consensus 533 l~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~l~~~~~~~lp-~~i~~L~~ 610 (976)
+....+....+|..+ .+.++.|++++|.+...... .|. ++++|++|+|+ ++.+..++ ..+.++.+
T Consensus 23 l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~-----~~~~~l~~L~~L~L~------~N~i~~i~~~~~~~l~~ 89 (361)
T 2xot_A 23 LSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAE-----WTPTRLTNLHSLLLS------HNHLNFISSEAFVPVPN 89 (361)
T ss_dssp EECCSSCCSSCCSSC--CTTCSEEECCSSCCCEECTT-----SSSSCCTTCCEEECC------SSCCCEECTTTTTTCTT
T ss_pred EEeCCCCcCccCccC--CCCCCEEECCCCCCCccChh-----hhhhcccccCEEECC------CCcCCccChhhccCCCC
Confidence 333344444444433 24567777777765443221 144 67777777777 55566665 35777777
Q ss_pred cceecC--ccccccCc-cccccCCccEEecCCCCCCccc-chhhcccCCCcEEEecccccccCcccc----cCCCCCCcC
Q 002044 611 LRYLKL--YLVEKLPE-TCCELLNLQTLNMCGSPGLKRL-PQGIGKLINLRHLMFEVDYLEYMPKGI----ERLTSLRTL 682 (976)
Q Consensus 611 Lr~L~L--~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~l-p~~i~~l~~L~~L~l~~~~l~~lp~~i----~~l~~L~~L 682 (976)
|++|+| +.+..+|. .+..+.+|++|+|++|. +..+ |..+..+++|++|++++|.+..+|..+ ..+++|+.|
T Consensus 90 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL 168 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEE
T ss_pred CCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEE
Confidence 777777 55666654 46677777777777776 5554 455777777777777777777777654 456666666
Q ss_pred Cce
Q 002044 683 SEF 685 (976)
Q Consensus 683 ~~~ 685 (976)
++.
T Consensus 169 ~L~ 171 (361)
T 2xot_A 169 DLS 171 (361)
T ss_dssp ECC
T ss_pred ECC
Confidence 543
No 142
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.81 E-value=1.9e-08 Score=102.45 Aligned_cols=132 Identities=13% Similarity=0.165 Sum_probs=97.8
Q ss_pred CCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccccccceEeCccccCCCcCcccc
Q 002044 772 PPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMP-ALGILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIH 850 (976)
Q Consensus 772 ~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~ 850 (976)
+++|+.|++++|.+..+.+..+..+++|+.|+|++|......| .+..+++|++|+|++|. ++.++...+
T Consensus 31 ~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f--------- 100 (220)
T 2v9t_B 31 PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLF--------- 100 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTT---------
T ss_pred CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHc---------
Confidence 3689999999998887755577888999999999986554433 58889999999999886 555443221
Q ss_pred cccCCCCCCCCCccCccCCccceeeecccccccccccCCCccccCCCcceEeeecCCCCCCCCc-CCCCCCCCCeEEEcc
Q 002044 851 IQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNSLPD-QLLQSTTLEELEIIR 929 (976)
Q Consensus 851 l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~l~~ 929 (976)
..+++|+.|.+.+ +......+..+..+++|+.|++++|. ++.+|. .+..+++|+.|++++
T Consensus 101 ---------------~~l~~L~~L~L~~---N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 101 ---------------EGLFSLQLLLLNA---NKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp ---------------TTCTTCCEEECCS---SCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred ---------------cCCCCCCEEECCC---CCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCC
Confidence 2467777777765 33333444557789999999999986 777764 477889999999999
Q ss_pred Ccc
Q 002044 930 CPI 932 (976)
Q Consensus 930 c~~ 932 (976)
||-
T Consensus 162 N~~ 164 (220)
T 2v9t_B 162 NPF 164 (220)
T ss_dssp SCE
T ss_pred CCc
Confidence 863
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.76 E-value=1.1e-08 Score=101.93 Aligned_cols=122 Identities=22% Similarity=0.310 Sum_probs=64.8
Q ss_pred EEEEccCCCCCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCccc-CccccCCCcc
Q 002044 533 LMLVLGYKNSFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEI-PKGIKKLRHL 611 (976)
Q Consensus 533 l~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~l-p~~i~~L~~L 611 (976)
+.+..+....+|..+. .++++|++++|.+...... ..|..+++|++|+|+ ++.+..+ |..+..+.+|
T Consensus 13 l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~----~~~~~l~~L~~L~Ls------~N~l~~~~~~~~~~l~~L 80 (192)
T 1w8a_A 13 VDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSD----GLFGRLPHLVKLELK------RNQLTGIEPNAFEGASHI 80 (192)
T ss_dssp EECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCS----CSGGGCTTCCEEECC------SSCCCCBCTTTTTTCTTC
T ss_pred EEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCc----cccccCCCCCEEECC------CCCCCCcCHhHcCCcccC
Confidence 3333334444443332 2566666666654332211 124566666666666 4444444 4556666666
Q ss_pred ceecC--ccccccCc-cccccCCccEEecCCCCCCccc-chhhcccCCCcEEEecccccc
Q 002044 612 RYLKL--YLVEKLPE-TCCELLNLQTLNMCGSPGLKRL-PQGIGKLINLRHLMFEVDYLE 667 (976)
Q Consensus 612 r~L~L--~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~l-p~~i~~l~~L~~L~l~~~~l~ 667 (976)
++|+| +.+..+|. .+.++++|++|++++|. +..+ |..+..+++|++|++++|.+.
T Consensus 81 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CEEECCSCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 66666 44555543 35566666666666665 4333 455666666666666555543
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.76 E-value=2.8e-10 Score=114.16 Aligned_cols=127 Identities=20% Similarity=0.245 Sum_probs=83.0
Q ss_pred CCcccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecC--ccc
Q 002044 542 SFPVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLV 619 (976)
Q Consensus 542 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~ 619 (976)
.++..+..+++|++|++++|.+.... .+.++++|++|+++ ++.+..+|..+..+++|++|++ +.+
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~l~-------~~~~l~~L~~L~l~------~n~l~~l~~~~~~~~~L~~L~L~~N~l 105 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEKIS-------SLSGMENLRILSLG------RNLIKKIENLDAVADTLEELWISYNQI 105 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESCCC-------CHHHHTTCCEEEEE------EEEECSCSSHHHHHHHCSEEEEEEEEC
T ss_pred hhhHHHhcCCCCCEEECCCCCCcccc-------ccccCCCCCEEECC------CCCcccccchhhcCCcCCEEECcCCcC
Confidence 34446667777777777777654421 25667777777777 4455566766666777777777 556
Q ss_pred cccCccccccCCccEEecCCCCCCcccch--hhcccCCCcEEEecccccccCccc-----------ccCCCCCCcCC
Q 002044 620 EKLPETCCELLNLQTLNMCGSPGLKRLPQ--GIGKLINLRHLMFEVDYLEYMPKG-----------IERLTSLRTLS 683 (976)
Q Consensus 620 ~~lp~~i~~L~~L~~L~l~~~~~l~~lp~--~i~~l~~L~~L~l~~~~l~~lp~~-----------i~~l~~L~~L~ 683 (976)
..+| .+..+++|++|++++|. +..+|. .+..+++|++|++++|.+...++. +..+++|+.|+
T Consensus 106 ~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 106 ASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp CCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 6666 56777777777777776 666554 567777777777776666544322 55666666654
No 145
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.75 E-value=3.6e-08 Score=107.52 Aligned_cols=178 Identities=14% Similarity=0.108 Sum_probs=112.0
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcc-cc-cceeehHHHHHHHhCCCCC
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISN-FE-KRMWNCESIIEALEGFAPN 251 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~-~~~wv~~~~~~~l~~~~~~ 251 (976)
.+++|++..++.+..++... ..+.+.++|++|+||||+|+.+++. .... +. ..+.+.. .+
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~----------~~ 86 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNA----------SD 86 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEET----------TC
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeec----------cc
Confidence 46999999999999988742 2334899999999999999999883 2211 11 1111111 00
Q ss_pred cccHHHHHHHHHHHH------cCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCchhh-hhc-cCCcceEec
Q 002044 252 LGELNSLLLRIDAFI------ARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKETV-ARM-MESTDVIFI 323 (976)
Q Consensus 252 ~~~~~~~~~~l~~~l------~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v-~~~-~~~~~~~~l 323 (976)
....+.....+.+.. .+++.++|+|+++.-....++.+...+.....++++|+||....- ... ......+.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~ 166 (327)
T 1iqp_A 87 ERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRF 166 (327)
T ss_dssp HHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEEC
T ss_pred cCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEe
Confidence 001111111222221 156889999999655445566677666665667889988876431 111 122347899
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHHh
Q 002044 324 KELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTIG 373 (976)
Q Consensus 324 ~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 373 (976)
.+++.++..+++...+...+.... .+..+.|++.++|.|-.+..+.
T Consensus 167 ~~l~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 167 RPLRDEDIAKRLRYIAENEGLELT----EEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp CCCCHHHHHHHHHHHHHTTTCEEC----HHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHCCCCHHHHHHHH
Confidence 999999999999887643222111 3455668899999998655443
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.73 E-value=3.7e-08 Score=107.39 Aligned_cols=286 Identities=11% Similarity=0.082 Sum_probs=145.9
Q ss_pred cCceeEEEecCcccchhhhHHHHHHHHhc-CCCcceEEecCcccccCCCCcccCccccCCCccceecCccccccCc-ccc
Q 002044 550 ARKLRSLMLSYNTLNQKASAQVLQGLFDQ-LTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKLYLVEKLPE-TCC 627 (976)
Q Consensus 550 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L~~~~~lp~-~i~ 627 (976)
+.+++.|.+.++- .... +.. +.. +++|++|||+++ .+......-+.+..++++.+.. ..+|+ .+.
T Consensus 24 ~~~l~~L~l~g~i-~~~~----~~~-l~~~l~~L~~LdLs~n------~i~~~~~~~~~~~~~~~~~~~~-~~I~~~aF~ 90 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAED----FRH-LRDEFPSLKVLDISNA------EIKMYSGKAGTYPNGKFYIYMA-NFVPAYAFS 90 (329)
T ss_dssp HHHCSEEEEEEEE-CHHH----HHH-HHHSCTTCCEEEEEEE------EECCEEESSSSSGGGCCEEECT-TEECTTTTE
T ss_pred hCceeEEEEeccc-cHHH----HHH-HHHhhccCeEEecCcc------eeEEecCccccccccccccccc-cccCHHHhc
Confidence 5678888888753 1111 222 333 899999999944 3431111112222334444421 14543 455
Q ss_pred c--------cCCccEEecCCCCCCcccchh-hcccCCCcEEEecccccccCccc-ccCCCCCCcCCceEEecCCCCCCCc
Q 002044 628 E--------LLNLQTLNMCGSPGLKRLPQG-IGKLINLRHLMFEVDYLEYMPKG-IERLTSLRTLSEFVVVNGSGKYGSK 697 (976)
Q Consensus 628 ~--------L~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~ 697 (976)
+ +.+|+.|+|.. . +..++.. +..+++|+.|++..+.+..++.. +....++..+.....
T Consensus 91 ~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~---------- 158 (329)
T 3sb4_A 91 NVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSS---------- 158 (329)
T ss_dssp EEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCT----------
T ss_pred ccccccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcch----------
Confidence 6 89999999988 4 7888765 78899999999988877766643 444333333321000
Q ss_pred ccccccccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCc-eEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCc
Q 002044 698 ACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLV-VLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLE 776 (976)
Q Consensus 698 ~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 776 (976)
.....+..+ . . ..+..+..|+ .+.+.... .....+...-..+.+++
T Consensus 159 -~~~~~~~~i---~-~-----------------~~f~~~~~L~~~i~~~~~~-----------~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 159 -DAYRFKNRW---E-H-----------------FAFIEGEPLETTIQVGAMG-----------KLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp -HHHHTSTTT---T-T-----------------SCEEESCCCEEEEEECTTC-----------CHHHHHHHTTCCGGGCS
T ss_pred -hhhhccccc---c-c-----------------cccccccccceeEEecCCC-----------cHHHHHhhcccCccccc
Confidence 000000000 0 0 0011122222 11111100 01112222223344556
Q ss_pred eEEEeecCCCCCCccccc-ccccccEEEEeCCCCCCCCC--CCCCCCCcceeeccccccceEeCccccCCCcCccccccc
Q 002044 777 SLQITGFKGRTLMLSWIV-SLNKLKKLRLLFCDKCEVMP--ALGILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIHIQD 853 (976)
Q Consensus 777 ~L~L~~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~l~--~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~l~~ 853 (976)
.+.+.+...... ...+. .+++|+.|+|.+|. +..++ .+..+++|+.|+|.++ ++.++...+.
T Consensus 206 ~l~~~~~l~~~~-~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~----------- 270 (329)
T 3sb4_A 206 FLTIEGKLDNAD-FKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFS----------- 270 (329)
T ss_dssp EEEEEECCCHHH-HHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-----------
T ss_pred eEEEeeeecHHH-HHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceehHHHhh-----------
Confidence 666655421111 11111 35677777777653 33444 2666777777777664 6666553321
Q ss_pred CCCCCCCCCccCccCCccc-eeeecccccccccccCCCccccCCCcceEeeecCCCCCCCCc-CCCCCCCCCeEE
Q 002044 854 GSMSSSSSSSANIAFPKLK-ELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNSLPD-QLLQSTTLEELE 926 (976)
Q Consensus 854 ~~~~~~~~~~~~~~fp~L~-~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~ 926 (976)
.+++|+ .|.+.+ ++. .+++..+..+++|+.|++..+. ++.++. .+.++++|+.|+
T Consensus 271 -------------~~~~L~~~l~l~~--~l~--~I~~~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 271 -------------NCGRLAGTLELPA--SVT--AIEFGAFMGCDNLRYVLATGDK-ITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp -------------TCTTCCEEEEECT--TCC--EECTTTTTTCTTEEEEEECSSC-CCEECTTTTCTTCCCCEEE
T ss_pred -------------CChhccEEEEEcc--cce--EEchhhhhCCccCCEEEeCCCc-cCccchhhhcCCcchhhhc
Confidence 244555 555543 222 2334456678888888887654 777764 567788888876
No 147
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.69 E-value=4.8e-08 Score=97.13 Aligned_cols=102 Identities=20% Similarity=0.324 Sum_probs=46.7
Q ss_pred CceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccC-ccccCCCccceecC--ccccccCc-cc
Q 002044 551 RKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIP-KGIKKLRHLRYLKL--YLVEKLPE-TC 626 (976)
Q Consensus 551 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp-~~i~~L~~Lr~L~L--~~~~~lp~-~i 626 (976)
++|++|++++|.+... +..|.++++|++|+|+ ++.+..++ ..+.++.+|++|+| +.+..+|. .+
T Consensus 31 ~~l~~L~L~~n~i~~i------p~~~~~l~~L~~L~Ls------~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f 98 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLV------PKELSNYKHLTLIDLS------NNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTF 98 (193)
T ss_dssp TTCCEEECCSSCCCSC------CGGGGGCTTCCEEECC------SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred CCCCEEECCCCcCchh------HHHhhcccCCCEEECC------CCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHh
Confidence 3455555555544321 1124455555555555 33343333 23445555555555 33444432 34
Q ss_pred cccCCccEEecCCCCCCcccchh-hcccCCCcEEEecccc
Q 002044 627 CELLNLQTLNMCGSPGLKRLPQG-IGKLINLRHLMFEVDY 665 (976)
Q Consensus 627 ~~L~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 665 (976)
..+++|++|+|++|. +..+|.. +..+++|++|++++|.
T Consensus 99 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 99 DGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 455555555555544 4444432 4445555555554443
No 148
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.69 E-value=3.9e-08 Score=96.41 Aligned_cols=105 Identities=28% Similarity=0.463 Sum_probs=56.6
Q ss_pred CceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCcc-ccCCCccceecC--ccccccCcc-c
Q 002044 551 RKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKG-IKKLRHLRYLKL--YLVEKLPET-C 626 (976)
Q Consensus 551 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~-i~~L~~Lr~L~L--~~~~~lp~~-i 626 (976)
++|++|++++|.+.... +..|..+++|++|+++ ++.+..+|.. ++.+.+|++|++ +.+..+|.. +
T Consensus 28 ~~l~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~------~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 96 (177)
T 2o6r_A 28 SSATRLELESNKLQSLP-----HGVFDKLTQLTKLSLS------QNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVF 96 (177)
T ss_dssp TTCSEEECCSSCCCCCC-----TTTTTTCTTCSEEECC------SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCcEEEeCCCcccEeC-----HHHhcCcccccEEECC------CCcceEeChhHccCCCccCEEECCCCCccccCHHHh
Confidence 45666666666543221 1224556666666666 4444444433 455666666666 445555543 4
Q ss_pred cccCCccEEecCCCCCCcccchh-hcccCCCcEEEecccccc
Q 002044 627 CELLNLQTLNMCGSPGLKRLPQG-IGKLINLRHLMFEVDYLE 667 (976)
Q Consensus 627 ~~L~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~~~~l~ 667 (976)
..+++|++|++++|. +..+|.. +..+++|++|++++|.+.
T Consensus 97 ~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 97 DKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 556666666666654 5555544 245666666666555444
No 149
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.62 E-value=7.2e-08 Score=95.85 Aligned_cols=117 Identities=21% Similarity=0.307 Sum_probs=92.8
Q ss_pred eEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccccCc-cccccC
Q 002044 554 RSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLPE-TCCELL 630 (976)
Q Consensus 554 r~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp~-~i~~L~ 630 (976)
++++++++.+..... .-.++|++|+|+ ++.+..+|..+.++.+|++|+| +.+..+|. .+.++.
T Consensus 13 ~~l~~~~~~l~~ip~--------~~~~~l~~L~L~------~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~ 78 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPK--------GIPRDVTELYLD------GNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT 78 (193)
T ss_dssp TEEECTTSCCSSCCS--------CCCTTCCEEECC------SSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CEEEcCCCCCCcCCC--------CCCCCCCEEECC------CCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCC
Confidence 466777766433211 113579999999 7778889999999999999999 67888774 689999
Q ss_pred CccEEecCCCCCCcccch-hhcccCCCcEEEecccccccCccc-ccCCCCCCcCCce
Q 002044 631 NLQTLNMCGSPGLKRLPQ-GIGKLINLRHLMFEVDYLEYMPKG-IERLTSLRTLSEF 685 (976)
Q Consensus 631 ~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~ 685 (976)
+|++|+|++|. +..+|. .+..+++|++|++++|.+..+|.+ +..+++|+.|++.
T Consensus 79 ~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 79 QLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp TCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence 99999999998 777765 589999999999999999999875 6778888877643
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.62 E-value=6.6e-10 Score=111.46 Aligned_cols=101 Identities=23% Similarity=0.323 Sum_probs=79.4
Q ss_pred HHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccccCccccccCCccEEecCCCCCCcccchhhcc
Q 002044 575 LFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKLPETCCELLNLQTLNMCGSPGLKRLPQGIGK 652 (976)
Q Consensus 575 ~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~ 652 (976)
.+..+++|++|+++ ++.+..+| .+..+++|++|++ +.+..+|..+..+++|++|++++|. +..+| .++.
T Consensus 43 ~~~~l~~L~~L~ls------~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~ 113 (198)
T 1ds9_A 43 TLSTLKACKHLALS------TNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GIEK 113 (198)
T ss_dssp HHHHTTTCSEEECS------EEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHH
T ss_pred HHhcCCCCCEEECC------CCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-cccc
Confidence 47788888888888 55566677 7888888888888 6777888877788888888888886 77777 5888
Q ss_pred cCCCcEEEecccccccCcc--cccCCCCCCcCCc
Q 002044 653 LINLRHLMFEVDYLEYMPK--GIERLTSLRTLSE 684 (976)
Q Consensus 653 l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~~ 684 (976)
+++|++|++++|.+..+|. .+..+++|+.|++
T Consensus 114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l 147 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL 147 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEE
T ss_pred CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEe
Confidence 8888888888888877664 5677777777653
No 151
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.60 E-value=5.8e-08 Score=96.51 Aligned_cols=97 Identities=21% Similarity=0.282 Sum_probs=60.2
Q ss_pred CcceEEecCcccccCCCCcccCcc--ccCCCccceecC--cccccc-CccccccCCccEEecCCCCCCcccchh-hcccC
Q 002044 581 GLRVLRIEGMKSLIGSGTNEIPKG--IKKLRHLRYLKL--YLVEKL-PETCCELLNLQTLNMCGSPGLKRLPQG-IGKLI 654 (976)
Q Consensus 581 ~Lr~L~L~~~~~l~~~~~~~lp~~--i~~L~~Lr~L~L--~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~l~ 654 (976)
+|++|+++ ++.+..++.. ++.+++|++|+| +.+..+ |..+.++.+|++|+|++|. +..+|.. +..++
T Consensus 30 ~l~~L~l~------~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~ 102 (192)
T 1w8a_A 30 HTTELLLN------DNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLH 102 (192)
T ss_dssp TCSEEECC------SCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCT
T ss_pred CCCEEECC------CCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCC
Confidence 66777776 4555555542 666777777777 455555 4566677777777777766 5554433 66677
Q ss_pred CCcEEEecccccccC-cccccCCCCCCcCCc
Q 002044 655 NLRHLMFEVDYLEYM-PKGIERLTSLRTLSE 684 (976)
Q Consensus 655 ~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~~ 684 (976)
+|++|++++|.+..+ |..++.+++|+.|++
T Consensus 103 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 103 QLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence 777777766666654 445566666665543
No 152
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.59 E-value=3.4e-07 Score=101.70 Aligned_cols=191 Identities=14% Similarity=0.148 Sum_probs=113.0
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhccccc-ceeehHHHHHHHhCCC---
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEK-RMWNCESIIEALEGFA--- 249 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~l~~~~--- 249 (976)
.+++|++..++.+...+.... ....+.|+|.+|+||||+|+.+++.......+.. .+..+........+..
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL 90 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSC
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCce
Confidence 469999999999999986432 2347889999999999999999873211111110 0111111111111110
Q ss_pred --------CCcccHHHHHHHHHHH-HcCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCchh-hhhc-cCCc
Q 002044 250 --------PNLGELNSLLLRIDAF-IARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKET-VARM-MEST 318 (976)
Q Consensus 250 --------~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~-~~~~ 318 (976)
........+...+... ..+++.++|+||+..-+...++.+...+.....+..+|++|.... +... ....
T Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~ 170 (373)
T 1jr3_A 91 IEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 (373)
T ss_dssp EEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTS
T ss_pred EEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhhe
Confidence 1112222222221110 124678999999965444556667777766556677787776432 2111 2334
Q ss_pred ceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHHh
Q 002044 319 DVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTIG 373 (976)
Q Consensus 319 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 373 (976)
..+.+.+++.++..+++...+...+.... .+....|++.++|.|..+..+.
T Consensus 171 ~~i~~~~l~~~~~~~~l~~~~~~~~~~~~----~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 171 LQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHSSSCHHHHHHHH
T ss_pred eEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHCCCCHHHHHHHH
Confidence 68999999999999999876532121111 3445679999999998776554
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.56 E-value=1.2e-07 Score=92.46 Aligned_cols=85 Identities=20% Similarity=0.327 Sum_probs=48.9
Q ss_pred CCcceEEecCcccccCCCCccc-CccccCCCccceecC--ccccccCcc-ccccCCccEEecCCCCCCcccchh-hcccC
Q 002044 580 TGLRVLRIEGMKSLIGSGTNEI-PKGIKKLRHLRYLKL--YLVEKLPET-CCELLNLQTLNMCGSPGLKRLPQG-IGKLI 654 (976)
Q Consensus 580 ~~Lr~L~L~~~~~l~~~~~~~l-p~~i~~L~~Lr~L~L--~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-i~~l~ 654 (976)
++|++|+|+ ++.+..+ |..++++.+|++|+| +.+..+|.. +.++++|++|+|++|. +..+|.. +..++
T Consensus 33 ~~L~~L~Ls------~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~ 105 (174)
T 2r9u_A 33 TDKQRLWLN------NNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLK 105 (174)
T ss_dssp TTCSEEECC------SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred CCCcEEEeC------CCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc-cceeCHHHhcccc
Confidence 556666666 4444444 345566666666666 455555544 3556666666666665 5555554 55666
Q ss_pred CCcEEEecccccccCcc
Q 002044 655 NLRHLMFEVDYLEYMPK 671 (976)
Q Consensus 655 ~L~~L~l~~~~l~~lp~ 671 (976)
+|++|++++|.+...+.
T Consensus 106 ~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 106 SLTHIYLYNNPWDCECR 122 (174)
T ss_dssp TCSEEECCSSCBCTTBG
T ss_pred CCCEEEeCCCCcccccc
Confidence 66666666655555444
No 154
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.54 E-value=3.3e-07 Score=99.40 Aligned_cols=181 Identities=14% Similarity=0.044 Sum_probs=109.0
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhccccc-ceeehHHHHHHHhCCCCCc
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEK-RMWNCESIIEALEGFAPNL 252 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~l~~~~~~~ 252 (976)
.+++|++..++.+.+++... ..+.+.++|++|+|||++|+.+++... ...+.. .+.+.. ......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~-------~~~~~~ 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNA-------SDERGI 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEET-------TSTTCT
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeC-------ccccCh
Confidence 46999999999999888642 233389999999999999999987310 111110 111111 001111
Q ss_pred ccHHHHHHHHHHH--H-cCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCchh-hhhc-cCCcceEecCCCC
Q 002044 253 GELNSLLLRIDAF--I-ARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKET-VARM-MESTDVIFIKELS 327 (976)
Q Consensus 253 ~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~-~~~~~~~~l~~L~ 327 (976)
.........+... + .+++.++|+|++..-.....+.+...+.....+.++|+||.... +... ......+.+.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~ 162 (319)
T 2chq_A 83 DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVP 162 (319)
T ss_dssp TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCC
T ss_pred HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCC
Confidence 1222222222211 1 25688999999954433344556666655556678888886543 2111 1234589999999
Q ss_pred HHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHH
Q 002044 328 EQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTI 372 (976)
Q Consensus 328 ~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 372 (976)
.++..+++...+...+.... .+....+++.++|.+-.+...
T Consensus 163 ~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 163 KEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp HHHHHHHHHHHHHTTCCCBC----HHHHHHHHHTTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 99999999887643222112 344566889999998765443
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.53 E-value=1.5e-07 Score=91.49 Aligned_cols=87 Identities=30% Similarity=0.481 Sum_probs=47.2
Q ss_pred CCCCcccCccccCCCccceecC--cccccc-CccccccCCccEEecCCCCCCcccchh-hcccCCCcEEEecccccccCc
Q 002044 595 GSGTNEIPKGIKKLRHLRYLKL--YLVEKL-PETCCELLNLQTLNMCGSPGLKRLPQG-IGKLINLRHLMFEVDYLEYMP 670 (976)
Q Consensus 595 ~~~~~~lp~~i~~L~~Lr~L~L--~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~~~~l~~lp 670 (976)
++.+..+|..+. .+|++|+| +.+..+ |..+.++.+|++|+|++|. +..+|.. +..+++|++|+++.|.+..+|
T Consensus 18 ~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~ 94 (170)
T 3g39_A 18 GKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94 (170)
T ss_dssp TSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCCccCEeC
Confidence 444555555442 45556665 445555 3345556666666666654 5555544 355666666666555665555
Q ss_pred cc-ccCCCCCCcCCc
Q 002044 671 KG-IERLTSLRTLSE 684 (976)
Q Consensus 671 ~~-i~~l~~L~~L~~ 684 (976)
.. ++.+++|+.|++
T Consensus 95 ~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 95 RGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTTTTTCTTCCEEEC
T ss_pred HHHhcCCCCCCEEEe
Confidence 43 455555555543
No 156
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.50 E-value=4.9e-07 Score=89.80 Aligned_cols=149 Identities=19% Similarity=0.185 Sum_probs=84.0
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhc-------ccccceeehHHHHHHHh
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVIS-------NFEKRMWNCESIIEALE 246 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------~f~~~~wv~~~~~~~l~ 246 (976)
..++||+++++++.+.+... ..+.+.|+|.+|+|||++|+.+++. ... .....+++... ....
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~ 91 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR--IINGEVPEGLKGRRVLALDMG--ALVA 91 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHH--HHHTCSCGGGTTCEEEEECHH--HHHT
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHH--HHhCCCchhhcCCcEEEeeHH--HHhc
Confidence 56999999999999998742 3456789999999999999999873 221 11123344331 1111
Q ss_pred CCCCCcccHHHHHHHHHHHH--cCCceEEEEcCCCCCC-------ccC-cHhHHHhhcCCCCCcEEEEEcCchhhhh---
Q 002044 247 GFAPNLGELNSLLLRIDAFI--ARKKFLLILDDVWTDD-------YSK-WEPFRRCLINGHRESRILVTTRKETVAR--- 313 (976)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~-------~~~-~~~l~~~l~~~~~gs~iivTtR~~~v~~--- 313 (976)
+ .............+.+.+ .+++.+||+||+..-. ... ...+...+. . .+..+|+||.......
T Consensus 92 ~-~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-~-~~~~~i~~~~~~~~~~~~~ 168 (195)
T 1jbk_A 92 G-AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-R-GELHCVGATTLDEYRQYIE 168 (195)
T ss_dssp T-TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH-T-TSCCEEEEECHHHHHHHTT
T ss_pred c-CCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-c-CCeEEEEeCCHHHHHHHHh
Confidence 1 111111222222333322 3567899999995421 122 223333332 2 2345777776544221
Q ss_pred ----ccCCcceEecCCCCHHHHHHHH
Q 002044 314 ----MMESTDVIFIKELSEQECWALF 335 (976)
Q Consensus 314 ----~~~~~~~~~l~~L~~~~~~~Lf 335 (976)
.......+.+.+++.++..+++
T Consensus 169 ~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 169 KDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred cCHHHHHHhceeecCCCCHHHHHHHh
Confidence 1122336889999988876654
No 157
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.47 E-value=1.3e-06 Score=92.65 Aligned_cols=161 Identities=10% Similarity=-0.030 Sum_probs=94.2
Q ss_pred ccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhc------ccccceeehH---------
Q 002044 175 EVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVIS------NFEKRMWNCE--------- 239 (976)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------~f~~~~wv~~--------- 239 (976)
.+.||++++++|...|...-. .+..+.+.|+|++|+|||++|+.|+++..... .|. .+++++
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~-~v~INc~~~~t~~~~ 97 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFD-YIHIDALELAGMDAL 97 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEE-EEEEETTCCC--HHH
T ss_pred ccCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceE-EEEEeccccCCHHHH
Confidence 488999999999988875433 34567889999999999999999998432111 222 333332
Q ss_pred --HHHHHHhCCCCCcccHHHHHHHHHHHH---cCCceEEEEcCCCCCCccCcHhHHHhhcC-CCCCc--EEEEEcCchhh
Q 002044 240 --SIIEALEGFAPNLGELNSLLLRIDAFI---ARKKFLLILDDVWTDDYSKWEPFRRCLIN-GHRES--RILVTTRKETV 311 (976)
Q Consensus 240 --~~~~~l~~~~~~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs--~iivTtR~~~v 311 (976)
.+.+++.+..............+...+ .++++++|||++..-. .-+.+...+.+ ....+ -||.++...+.
T Consensus 98 ~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 98 YEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 556666554322222223333333333 4567999999995422 22333333221 11222 33444443221
Q ss_pred -----hhcc-CC--cceEecCCCCHHHHHHHHHHHhc
Q 002044 312 -----ARMM-ES--TDVIFIKELSEQECWALFKRFAC 340 (976)
Q Consensus 312 -----~~~~-~~--~~~~~l~~L~~~~~~~Lf~~~~~ 340 (976)
.... .. ...+.+.+.+.++-.+++.+++-
T Consensus 176 ~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 176 IREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 1111 01 24789999999999999988763
No 158
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.46 E-value=3.6e-07 Score=89.47 Aligned_cols=119 Identities=26% Similarity=0.394 Sum_probs=92.0
Q ss_pred eeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCc-cccCCCccceecC--ccccccCcc-ccc
Q 002044 553 LRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPK-GIKKLRHLRYLKL--YLVEKLPET-CCE 628 (976)
Q Consensus 553 Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~-~i~~L~~Lr~L~L--~~~~~lp~~-i~~ 628 (976)
.+.+.+.++.+.... ..-.++|+.|+++ ++.+..+|. .++.+.+|++|++ +.+..+|.. +..
T Consensus 9 ~~~l~~~~~~l~~~p--------~~~~~~l~~L~l~------~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 74 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVP--------TGIPSSATRLELE------SNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK 74 (177)
T ss_dssp TTEEECCSSCCSSCC--------TTCCTTCSEEECC------SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CCEEEecCCCCccCC--------CCCCCCCcEEEeC------CCcccEeCHHHhcCcccccEEECCCCcceEeChhHccC
Confidence 356666666543321 1234689999999 566667765 4689999999999 678888765 689
Q ss_pred cCCccEEecCCCCCCcccchh-hcccCCCcEEEecccccccCcccc-cCCCCCCcCCceE
Q 002044 629 LLNLQTLNMCGSPGLKRLPQG-IGKLINLRHLMFEVDYLEYMPKGI-ERLTSLRTLSEFV 686 (976)
Q Consensus 629 L~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~~~~ 686 (976)
+.+|++|++++|. +..+|.. +..+++|++|+++.|.+..+|..+ ..+++|+.|++..
T Consensus 75 l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 75 LTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence 9999999999997 7787765 689999999999999999998764 7788888886543
No 159
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.46 E-value=2.4e-07 Score=90.27 Aligned_cols=95 Identities=27% Similarity=0.441 Sum_probs=74.4
Q ss_pred ceEEecCcccccCCCCcccCccccCCCccceecC--cccccc-CccccccCCccEEecCCCCCCcccchh-hcccCCCcE
Q 002044 583 RVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEKL-PETCCELLNLQTLNMCGSPGLKRLPQG-IGKLINLRH 658 (976)
Q Consensus 583 r~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~ 658 (976)
+.++++ ++.+..+|..+. .+|++|+| +.+..+ |..+.++++|++|+|++|. +..+|.. +..+++|++
T Consensus 15 ~~l~~~------~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 15 TLVNCQ------NIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQ 85 (174)
T ss_dssp SEEECC------SSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred cEEEeC------CCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhE
Confidence 567777 666777887664 78888888 567777 4578888889999998886 8888776 478888999
Q ss_pred EEecccccccCccc-ccCCCCCCcCCceE
Q 002044 659 LMFEVDYLEYMPKG-IERLTSLRTLSEFV 686 (976)
Q Consensus 659 L~l~~~~l~~lp~~-i~~l~~L~~L~~~~ 686 (976)
|++++|.+..+|.. ++.+++|+.|++..
T Consensus 86 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 86 LDLNDNHLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred EECCCCccceeCHHHhccccCCCEEEeCC
Confidence 98888888888876 77888888876543
No 160
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.43 E-value=3.2e-07 Score=94.91 Aligned_cols=173 Identities=16% Similarity=0.066 Sum_probs=96.6
Q ss_pred Cccccc---hhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCC
Q 002044 174 SEVRGR---VEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAP 250 (976)
Q Consensus 174 ~~~~Gr---~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~ 250 (976)
.+|+|. +..++.+..+... ...+.+.|+|.+|+||||+|+.+++. .......+.|+...-. ....
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~------~~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~---~~~~- 95 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASG------DGVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIH---ASIS- 95 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHT------CSCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGG---GGSC-
T ss_pred hhccCCCCCHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHH---HHHH-
Confidence 457763 3555666665542 23467899999999999999999883 3332233445443110 0000
Q ss_pred CcccHHHHHHHHHHHHcCCceEEEEcCCCCCCccC--cHhHHHhhcCC-CCC-cEEEEEcCchh---------hhhccCC
Q 002044 251 NLGELNSLLLRIDAFIARKKFLLILDDVWTDDYSK--WEPFRRCLING-HRE-SRILVTTRKET---------VARMMES 317 (976)
Q Consensus 251 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~iivTtR~~~---------v~~~~~~ 317 (976)
.. ..+.+ .++.+||+||++.-.... .+.+...+... ..+ .++|+||+... +...+..
T Consensus 96 --~~-------~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~ 165 (242)
T 3bos_A 96 --TA-------LLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHW 165 (242)
T ss_dssp --GG-------GGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHH
T ss_pred --HH-------HHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhc
Confidence 00 00011 456799999995433222 23333332211 112 25888877432 1111111
Q ss_pred cceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHH
Q 002044 318 TDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTI 372 (976)
Q Consensus 318 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 372 (976)
...+.+.+++.++..+++...+...... .+ .+..+.+++.++|.+-.+..+
T Consensus 166 ~~~i~l~~~~~~~~~~~l~~~~~~~~~~-~~---~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 166 GLTYQLQPMMDDEKLAALQRRAAMRGLQ-LP---EDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp SEEEECCCCCGGGHHHHHHHHHHHTTCC-CC---HHHHHHHHHHTTTCHHHHHHH
T ss_pred CceEEeCCCCHHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHccCCHHHHHHH
Confidence 2689999999999999998876422211 11 344566888899887665544
No 161
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.41 E-value=2.2e-07 Score=101.17 Aligned_cols=125 Identities=10% Similarity=0.068 Sum_probs=87.3
Q ss_pred ccccccEEEEeCCCCCCCCCCC-CCCCCcceeeccccccceEeCccccCCCcCcccccccCCCCCCCCCccCccCCccce
Q 002044 795 SLNKLKKLRLLFCDKCEVMPAL-GILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIHIQDGSMSSSSSSSANIAFPKLKE 873 (976)
Q Consensus 795 ~l~~L~~L~L~~~~~~~~l~~l-~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~ 873 (976)
.+.++..+.+.+.-.......+ ..+++|+.|+|.++. ++.++...+. .+++|+.
T Consensus 200 ~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~------------------------~~~~L~~ 254 (329)
T 3sb4_A 200 QPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFA------------------------QKKYLLK 254 (329)
T ss_dssp CGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTT------------------------TCTTCCE
T ss_pred CccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhh------------------------CCCCCCE
Confidence 4678888888775321111111 136899999999876 7777764332 4567777
Q ss_pred eeecccccccccccCCCccccCCCcc-eEeeecCCCCCCCC-cCCCCCCCCCeEEEccCcchHHhhccCCCCCcccccCC
Q 002044 874 LKFFCLDEWEEWDFGKEDITIMPQLS-SMKISYCSKLNSLP-DQLLQSTTLEELEIIRCPILEERFKKDTGEDWSKITHI 951 (976)
Q Consensus 874 L~l~~l~~l~~~~~~~~~~~~l~~L~-~L~l~~c~~L~~lp-~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l 951 (976)
|.+.+ ++. .+++..+..+++|+ .|++.+ .++.++ ..+.++++|+.|++.++ .+...+...+.....+
T Consensus 255 l~l~~--ni~--~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n-----~i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 255 IKLPH--NLK--TIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD-----KITTLGDELFGNGVPS 323 (329)
T ss_dssp EECCT--TCC--EECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS-----CCCEECTTTTCTTCCC
T ss_pred EECCc--ccc--eehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC-----ccCccchhhhcCCcch
Confidence 77754 233 24455577899999 999997 578886 66788999999999887 6666666677777777
Q ss_pred Ccee
Q 002044 952 PKIK 955 (976)
Q Consensus 952 ~~l~ 955 (976)
+.+.
T Consensus 324 ~~ly 327 (329)
T 3sb4_A 324 KLIY 327 (329)
T ss_dssp CEEE
T ss_pred hhhc
Confidence 7664
No 162
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.39 E-value=8.2e-07 Score=86.12 Aligned_cols=104 Identities=21% Similarity=0.268 Sum_probs=79.4
Q ss_pred eeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCccc-CccccCCCccceecC--ccccccCcc-ccc
Q 002044 553 LRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEI-PKGIKKLRHLRYLKL--YLVEKLPET-CCE 628 (976)
Q Consensus 553 Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~l-p~~i~~L~~Lr~L~L--~~~~~lp~~-i~~ 628 (976)
.+.++++++.+..... .-.++|++|+|+ ++.+..+ |..+..+.+|++|+| +.+..+|.. +.+
T Consensus 11 ~~~l~~s~n~l~~ip~--------~~~~~l~~L~L~------~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~ 76 (170)
T 3g39_A 11 GTTVDCSGKSLASVPT--------GIPTTTQVLYLY------DNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK 76 (170)
T ss_dssp TTEEECTTSCCSSCCS--------CCCTTCSEEECC------SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CCEEEeCCCCcCccCc--------cCCCCCcEEEcC------CCcCCccChhhhcCcccCCEEECCCCCcCccChhhccC
Confidence 4577777776543211 113678899998 6677777 566888999999999 678888865 578
Q ss_pred cCCccEEecCCCCCCcccchh-hcccCCCcEEEecccccccCcc
Q 002044 629 LLNLQTLNMCGSPGLKRLPQG-IGKLINLRHLMFEVDYLEYMPK 671 (976)
Q Consensus 629 L~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~~~~l~~lp~ 671 (976)
+++|++|+|++|. +..+|.. +..+++|++|++++|.+...+.
T Consensus 77 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 77 LTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9999999999997 8888775 7899999999998887765543
No 163
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.31 E-value=2.7e-06 Score=93.55 Aligned_cols=179 Identities=13% Similarity=0.083 Sum_probs=105.8
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhccccc-ceeehHHHHHHHhCCCCCc
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEK-RMWNCESIIEALEGFAPNL 252 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~l~~~~~~~ 252 (976)
.+++|+++.++.+..++.... ...+.|+|++|+||||+|+.+++.......+.. ...+.. .+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~----------~~~ 100 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA----------SDE 100 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS----------SSC
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc----------ccc
Confidence 568999999999999987432 223889999999999999999883211111111 111110 000
Q ss_pred ccHHHHHHHHHHHH----------------cCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCchh-hhhc-
Q 002044 253 GELNSLLLRIDAFI----------------ARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKET-VARM- 314 (976)
Q Consensus 253 ~~~~~~~~~l~~~l----------------~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~- 314 (976)
.........+.... ..++-+|++|++..-.......+...+.......++|++|.... +...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l 180 (353)
T 1sxj_D 101 RGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPL 180 (353)
T ss_dssp CCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred cchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchh
Confidence 11111111111111 13456999999954433444556666655555567777775432 2111
Q ss_pred cCCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHH
Q 002044 315 MESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTI 372 (976)
Q Consensus 315 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 372 (976)
......+.+.+++.++..+.+...+........ .+..+.|++.++|.|-.+..+
T Consensus 181 ~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 181 ASQCSKFRFKALDASNAIDRLRFISEQENVKCD----DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp HHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHTSSCHHHHHHH
T ss_pred hccCceEEeCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 122357899999999999999887633222112 345667999999998764433
No 164
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.30 E-value=2.8e-06 Score=93.56 Aligned_cols=188 Identities=14% Similarity=0.066 Sum_probs=103.6
Q ss_pred CccccchhHHHHHHHHH-hcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHH-------HH-
Q 002044 174 SEVRGRVEEKNALKSKL-LCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESII-------EA- 244 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L-~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-------~~- 244 (976)
.+++|.+...+.+..++ ... ....+.|+|+.|+||||+|+.+++. +...-...+.+..... ..
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~------~~~~~ll~Gp~G~GKTtl~~~la~~--l~~~~~g~i~~~~~~~~~~~~~~~~~ 85 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR------DLPHLLLYGPNGTGKKTRCMALLES--IFGPGVYRLKIDVRQFVTASNRKLEL 85 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT------CCCCEEEECSTTSSHHHHHHTHHHH--HSCTTCCC------------------
T ss_pred HHhcCCHHHHHHHHHHHhhCC------CCCeEEEECCCCCCHHHHHHHHHHH--HcCCCCCeEEecceeeccccccccee
Confidence 46899999998888887 421 2222899999999999999988762 1110000010000000 00
Q ss_pred ----------HhCCCCCcccHHHHHHHHHHHH--------------cCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCc
Q 002044 245 ----------LEGFAPNLGELNSLLLRIDAFI--------------ARKKFLLILDDVWTDDYSKWEPFRRCLINGHRES 300 (976)
Q Consensus 245 ----------l~~~~~~~~~~~~~~~~l~~~l--------------~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 300 (976)
+................+.+.. .+++-++|+|++..-+......+...+.....+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~ 165 (354)
T 1sxj_E 86 NVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNI 165 (354)
T ss_dssp CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTE
T ss_pred eeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCC
Confidence 0000000011001112222221 2356699999996644444555666665545567
Q ss_pred EEEEEcCchh-hhhc-cCCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHH
Q 002044 301 RILVTTRKET-VARM-MESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTI 372 (976)
Q Consensus 301 ~iivTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 372 (976)
.+|++|.+.. +... ......+++.+++.++..+.+...+...+..... .+....|++.++|.+-.+..+
T Consensus 166 ~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 166 RLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET---KDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp EEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC---SHHHHHHHHHHTTCHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHcCCCHHHHHHH
Confidence 8888877532 2221 1334689999999999999998776322211110 234456889999988655443
No 165
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.29 E-value=7.5e-06 Score=86.93 Aligned_cols=185 Identities=16% Similarity=0.164 Sum_probs=100.9
Q ss_pred cCCccccchhHHHHHHHHHhccccc-------CCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHH
Q 002044 172 DLSEVRGRVEEKNALKSKLLCKSSE-------QTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEA 244 (976)
Q Consensus 172 ~~~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 244 (976)
...+++|.+..++++.+.+...... +....+-+.|+|++|+|||+||+.+++. ....|-. +.. ..
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~~~~---v~~---~~ 86 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNATFIR---VVG---SE 86 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCEEEE---EEG---GG
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEEE---Eeh---HH
Confidence 3457999999999998887532100 0123456899999999999999999883 3333321 111 00
Q ss_pred HhCCCCCcccHHHHHHH-HHHHHcCCceEEEEcCCCCC-----------CccCcHhHHH---hhc--CCCCCcEEEEEcC
Q 002044 245 LEGFAPNLGELNSLLLR-IDAFIARKKFLLILDDVWTD-----------DYSKWEPFRR---CLI--NGHRESRILVTTR 307 (976)
Q Consensus 245 l~~~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~l~~---~l~--~~~~gs~iivTtR 307 (976)
+... ........... +......++.+|+||++..- +......+.. .+. ....+..||.||.
T Consensus 87 ~~~~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn 164 (285)
T 3h4m_A 87 LVKK--FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATN 164 (285)
T ss_dssp GCCC--STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECS
T ss_pred HHHh--ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCC
Confidence 1111 11112222222 23333456789999999421 0011112222 222 1234567888887
Q ss_pred chhhhh-cc----CCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCC-CchHHHH
Q 002044 308 KETVAR-MM----ESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKG-LPLAAKT 371 (976)
Q Consensus 308 ~~~v~~-~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~ 371 (976)
...... .. .....+.+++.+.++..+++...+.... ......+ ..+++.+.| .|-.+..
T Consensus 165 ~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~-~~~~~~~----~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 165 RPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMN-LAEDVNL----EEIAKMTEGCVGAELKA 229 (285)
T ss_dssp CGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCCH----HHHHHHCTTCCHHHHHH
T ss_pred CchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCC-CCCcCCH----HHHHHHcCCCCHHHHHH
Confidence 543221 11 1234789999999999999988764322 1122233 346677766 3434443
No 166
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.29 E-value=9e-06 Score=88.71 Aligned_cols=178 Identities=13% Similarity=0.140 Sum_probs=104.4
Q ss_pred CCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCCCc
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAPNL 252 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~~~ 252 (976)
..+++|++..++++..++...... ......|.|+|++|+|||++|+.+++ .....|- .+.... .
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~ia~--~~~~~~~---~~~~~~----------~ 91 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKR-NECLDHILFSGPAGLGKTTLANIISY--EMSANIK---TTAAPM----------I 91 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHT-TSCCCCEEEECSTTSSHHHHHHHHHH--HTTCCEE---EEEGGG----------C
T ss_pred HHHhCChHHHHHHHHHHHHHHHhc-CCCCCeEEEECcCCCCHHHHHHHHHH--HhCCCeE---Eecchh----------c
Confidence 357999999999999888753211 12345689999999999999999987 3333331 111100 0
Q ss_pred ccHHHHHHHHHHHHcCCceEEEEcCCCCCCccCcHhHHHhhcCCC------------------CCcEEEEEcCchhh-hh
Q 002044 253 GELNSLLLRIDAFIARKKFLLILDDVWTDDYSKWEPFRRCLINGH------------------RESRILVTTRKETV-AR 313 (976)
Q Consensus 253 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~iivTtR~~~v-~~ 313 (976)
.........+.. ..+..+|+||++..-.......+...+.... ++..+|.||..... ..
T Consensus 92 ~~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~ 169 (338)
T 3pfi_A 92 EKSGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSN 169 (338)
T ss_dssp CSHHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCH
T ss_pred cchhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCH
Confidence 111111111111 2467899999996543333344544443321 12456666664321 11
Q ss_pred c-cCC-cceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHH
Q 002044 314 M-MES-TDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTI 372 (976)
Q Consensus 314 ~-~~~-~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 372 (976)
. ... ...+.+.+++.++..+++...+...... --.+..+.|++.+.|.|-.+..+
T Consensus 170 ~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~----~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 170 PLRDRFGMQFRLEFYKDSELALILQKAALKLNKT----CEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp HHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE----ECHHHHHHHHHTTTTCHHHHHHH
T ss_pred HHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHCcCHHHHHHH
Confidence 1 122 3689999999999999998776332211 11345566888999998554433
No 167
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.27 E-value=1.6e-05 Score=83.27 Aligned_cols=188 Identities=13% Similarity=0.096 Sum_probs=97.7
Q ss_pred CCccccchhHHHHHHHHHhc---ccc---cCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHh
Q 002044 173 LSEVRGRVEEKNALKSKLLC---KSS---EQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALE 246 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~---~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~ 246 (976)
-.+++|.+..++.+.+++.. +.. .+....+.|.|+|++|+|||++|+.+++. ....| +.+... .+.
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~~~~~---~~~ 76 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVPF---LAMAGA---EFV 76 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCCE---EEEETT---TTS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEechH---HHH
Confidence 35789998888777665432 110 00123456889999999999999999983 33222 111110 000
Q ss_pred CCCCCcccHHHHHHHHHHHHcCCceEEEEcCCCCC------------CccCc---HhHHHhhcC--CCCCcEEEEEcCch
Q 002044 247 GFAPNLGELNSLLLRIDAFIARKKFLLILDDVWTD------------DYSKW---EPFRRCLIN--GHRESRILVTTRKE 309 (976)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------------~~~~~---~~l~~~l~~--~~~gs~iivTtR~~ 309 (976)
... ...........+.......+.+|++|++..- +.... ..+...+.. ...+..||.||...
T Consensus 77 ~~~-~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~ 155 (262)
T 2qz4_A 77 EVI-GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRA 155 (262)
T ss_dssp SSS-TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCG
T ss_pred hhc-cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCCh
Confidence 000 0011112222333333456789999999532 11111 222222222 12345677777654
Q ss_pred hhh-hcc-C--C-cceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCch-HHHHH
Q 002044 310 TVA-RMM-E--S-TDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPL-AAKTI 372 (976)
Q Consensus 310 ~v~-~~~-~--~-~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 372 (976)
... ... . . ...+.++..+.++-.+++...+..... .. ........+++.+.|.+- .|..+
T Consensus 156 ~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~~--~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 156 DILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-TQ--SSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp GGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-CB--THHHHHHHHHHTCTTCCHHHHHHH
T ss_pred hhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-Cc--chhhHHHHHHHHCCCCCHHHHHHH
Confidence 321 111 1 2 357889999999999999887633221 11 112234668888888754 44433
No 168
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.27 E-value=8.4e-06 Score=91.58 Aligned_cols=177 Identities=18% Similarity=0.193 Sum_probs=101.7
Q ss_pred CCccccchhHH---HHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCC
Q 002044 173 LSEVRGRVEEK---NALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFA 249 (976)
Q Consensus 173 ~~~~~Gr~~~~---~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~ 249 (976)
-.+++|.+..+ ..+...+.. .....+.|+|.+|+||||+|+.+++ .....|....- ..
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~------~~~~~vLL~GppGtGKTtlAr~ia~--~~~~~f~~l~a-----------~~ 85 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEA------GHLHSMILWGPPGTGKTTLAEVIAR--YANADVERISA-----------VT 85 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHH------TCCCEEEEECSTTSSHHHHHHHHHH--HTTCEEEEEET-----------TT
T ss_pred HHHhCCcHHHHhchHHHHHHHHc------CCCcEEEEECCCCCcHHHHHHHHHH--HhCCCeEEEEe-----------cc
Confidence 35689988877 667777763 2456789999999999999999998 34334422110 11
Q ss_pred CCcccHHHHHHHHHHH-HcCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEE-EcCchh--hh-hccCCcceEecC
Q 002044 250 PNLGELNSLLLRIDAF-IARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILV-TTRKET--VA-RMMESTDVIFIK 324 (976)
Q Consensus 250 ~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-TtR~~~--v~-~~~~~~~~~~l~ 324 (976)
....+........... ..+++.+|++|++..-.....+.+...+..+ . ..+|. ||.+.. +. .......++.++
T Consensus 86 ~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~-~-v~lI~att~n~~~~l~~aL~sR~~v~~l~ 163 (447)
T 3pvs_A 86 SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG-T-ITFIGATTENPSFELNSALLSRARVYLLK 163 (447)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT-S-CEEEEEESSCGGGSSCHHHHTTEEEEECC
T ss_pred CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC-c-eEEEecCCCCcccccCHHHhCceeEEeeC
Confidence 1112222222222221 2467889999999765444555566666542 2 33444 444432 11 112335688999
Q ss_pred CCCHHHHHHHHHHHhcCCCCC---CcchhHHHHHHHHHhhcCCCchHHH
Q 002044 325 ELSEQECWALFKRFACFGRSL---SECEQLEEIGKKIVGKCKGLPLAAK 370 (976)
Q Consensus 325 ~L~~~~~~~Lf~~~~~~~~~~---~~~~~~~~~~~~i~~~c~GlPLai~ 370 (976)
+++.++..+++.+.+...... ....--.+..+.|++.++|.+-.+.
T Consensus 164 ~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 164 SLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp CCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 999999999998876431100 1111123455668888888776443
No 169
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.26 E-value=5.9e-06 Score=95.37 Aligned_cols=191 Identities=13% Similarity=0.131 Sum_probs=104.5
Q ss_pred CccccchhHHHHHHHHHhccccc-----------CCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH---
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSE-----------QTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE--- 239 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~-----------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--- 239 (976)
.+++|++..++++.+++...... +....+.+.|+|++|+||||+|+.+++. . .+.. +.+..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l--~~~~-i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--L--GYDI-LEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--T--TCEE-EEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--c--CCCE-EEEeCCCc
Confidence 57999999999999999752100 0123468999999999999999999983 2 1221 22221
Q ss_pred ---HHHHHHhCCCCCcccHHHHHHHHHHH--HcCCceEEEEcCCCCCCc---cCcHhHHHhhcCCCCCcEEEEEcCchh-
Q 002044 240 ---SIIEALEGFAPNLGELNSLLLRIDAF--IARKKFLLILDDVWTDDY---SKWEPFRRCLINGHRESRILVTTRKET- 310 (976)
Q Consensus 240 ---~~~~~l~~~~~~~~~~~~~~~~l~~~--l~~k~~LlVlDdv~~~~~---~~~~~l~~~l~~~~~gs~iivTtR~~~- 310 (976)
..+.....................+. ..+++.+||+|++..-.. ..+..+...+... +..||+++.+..
T Consensus 114 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~~~ 191 (516)
T 1sxj_A 114 RSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNERNL 191 (516)
T ss_dssp CCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCTTS
T ss_pred chHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCCCC
Confidence 12211111000000000000000000 125678999999954221 1224444444332 234665555422
Q ss_pred --hhhccCCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCC-CchHHHHHhhh
Q 002044 311 --VARMMESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKG-LPLAAKTIGSL 375 (976)
Q Consensus 311 --v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~~~~ 375 (976)
+.........+.+.+++.++..+.+...+........+ +....|++.++| ++-++..+...
T Consensus 192 ~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~----~~l~~la~~s~GdiR~~i~~L~~~ 255 (516)
T 1sxj_A 192 PKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP----NVIDRLIQTTRGDIRQVINLLSTI 255 (516)
T ss_dssp STTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT----THHHHHHHHTTTCHHHHHHHHTHH
T ss_pred ccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHcCCcHHHHHHHHHHH
Confidence 22222335579999999999999988766432222222 234568889999 55566655433
No 170
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.21 E-value=8.4e-06 Score=91.81 Aligned_cols=155 Identities=14% Similarity=0.100 Sum_probs=91.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccc--cceeehH-HH----HHHHhCCCCCcccHHHHHHHHHHHHcCCceEE
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFE--KRMWNCE-SI----IEALEGFAPNLGELNSLLLRIDAFIARKKFLL 273 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~-~~----~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~Ll 273 (976)
...+.|+|.+|+||||||+.+++ .....+. .+++++. .+ ...+... . ...+...+..+.-+|
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~vL 198 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSEKFLNDLVDSMKEG-----K----LNEFREKYRKKVDIL 198 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHHHHHHHHHHHHHTT-----C----HHHHHHHHTTTCSEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHHHHHHHHHHHHHcc-----c----HHHHHHHhcCCCCEE
Confidence 56789999999999999999998 4444432 2345554 22 2222111 0 122333444467899
Q ss_pred EEcCCCCCCc--cCcHhHHHhhcC-CCCCcEEEEEcCchh---------hhhccCCcceEecCCCCHHHHHHHHHHHhcC
Q 002044 274 ILDDVWTDDY--SKWEPFRRCLIN-GHRESRILVTTRKET---------VARMMESTDVIFIKELSEQECWALFKRFACF 341 (976)
Q Consensus 274 VlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 341 (976)
|+||++.-.. ..-+.+...+.. ...|..||+||.... +...+....++.+++++.++..+++.+.+..
T Consensus 199 ~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~ 278 (440)
T 2z4s_A 199 LIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEI 278 (440)
T ss_dssp EEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred EEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 9999954321 112233333321 234678888887532 2222233367899999999999999887632
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCCchHHH
Q 002044 342 GRSLSECEQLEEIGKKIVGKCKGLPLAAK 370 (976)
Q Consensus 342 ~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 370 (976)
.....++ +....|++.++|.+-.+.
T Consensus 279 ~~~~i~~----e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 279 EHGELPE----EVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HTCCCCT----THHHHHHHHCCSCHHHHH
T ss_pred cCCCCCH----HHHHHHHHhcCCCHHHHH
Confidence 2211122 234558888888875443
No 171
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.14 E-value=6.5e-05 Score=83.54 Aligned_cols=125 Identities=10% Similarity=0.092 Sum_probs=74.8
Q ss_pred CCCceEEEeecCCCCCCcccccccccccEEEEeCCCCC----CCCC--CCCCCCCcceeeccccccceEeCccccCCCcC
Q 002044 773 PNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKC----EVMP--ALGILPSLEVLKIRFMKSVKRVGNEFLGTEIS 846 (976)
Q Consensus 773 ~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~----~~l~--~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~ 846 (976)
.+|+.+.|.. ....+.+..+..+++|+.+.+.++... ..++ .+..+++|+.+.|.+ .++.++...+.
T Consensus 248 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~---- 320 (401)
T 4fdw_A 248 SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLG---- 320 (401)
T ss_dssp CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTT----
T ss_pred CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhc----
Confidence 4666676632 333343455667788888888776432 1232 366788888888873 36666654322
Q ss_pred cccccccCCCCCCCCCccCccCCccceeeecccccccccccCCCccccCCCcceEeeecCCCCCCCC-cCCCCCC-CCCe
Q 002044 847 DHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNSLP-DQLLQST-TLEE 924 (976)
Q Consensus 847 ~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp-~~l~~l~-~L~~ 924 (976)
.+++|+.+.+.. ++.. ++...+..+ +|+.|++.++. +..++ ..+.+++ +++.
T Consensus 321 --------------------~c~~L~~l~lp~--~l~~--I~~~aF~~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~ 374 (401)
T 4fdw_A 321 --------------------GNRKVTQLTIPA--NVTQ--INFSAFNNT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITV 374 (401)
T ss_dssp --------------------TCCSCCEEEECT--TCCE--ECTTSSSSS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCE
T ss_pred --------------------CCCCccEEEECc--cccE--EcHHhCCCC-CCCEEEEcCCC-CcccccccccCCCCCccE
Confidence 345677776643 2322 233446677 89999998875 45554 3344553 6788
Q ss_pred EEEccC
Q 002044 925 LEIIRC 930 (976)
Q Consensus 925 L~l~~c 930 (976)
|++-..
T Consensus 375 l~vp~~ 380 (401)
T 4fdw_A 375 IRVPAE 380 (401)
T ss_dssp EEECGG
T ss_pred EEeCHH
Confidence 888654
No 172
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.10 E-value=6e-06 Score=81.26 Aligned_cols=45 Identities=24% Similarity=0.181 Sum_probs=38.1
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcc
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
..++||+.+++.+.+.+... ..+.+.|+|.+|+||||+|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999998742 3446689999999999999999873
No 173
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.09 E-value=1.6e-05 Score=86.09 Aligned_cols=172 Identities=14% Similarity=0.101 Sum_probs=100.4
Q ss_pred CCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCCCc
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAPNL 252 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~~~ 252 (976)
-.+++|.+..++.+.+++.... ...++.+.|++|+|||++|+.+++. ....| +.+.. ..
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~--l~~~~---~~i~~--------~~--- 83 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHD--VNADM---MFVNG--------SD--- 83 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHH--TTEEE---EEEET--------TT---
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH--hCCCE---EEEcc--------cc---
Confidence 3579999999999999987432 3357788899999999999999883 32222 22221 11
Q ss_pred ccHHHHHHHHHHHHc-----CCceEEEEcCCCCCC-ccCcHhHHHhhcCCCCCcEEEEEcCchh-hhhc-cCCcceEecC
Q 002044 253 GELNSLLLRIDAFIA-----RKKFLLILDDVWTDD-YSKWEPFRRCLINGHRESRILVTTRKET-VARM-MESTDVIFIK 324 (976)
Q Consensus 253 ~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~-~~~~~~~~l~ 324 (976)
...+.....+.+... +++.++|+|++..-. ....+.+...+.....+.++|+||.... +... .....++.++
T Consensus 84 ~~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~ 163 (324)
T 3u61_B 84 CKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFG 163 (324)
T ss_dssp CCHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECC
T ss_pred cCHHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeC
Confidence 112333333333332 267899999995433 3334445555444344568888887543 1111 1123579999
Q ss_pred CCCHHHHHHH-------HHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchH
Q 002044 325 ELSEQECWAL-------FKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLA 368 (976)
Q Consensus 325 ~L~~~~~~~L-------f~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 368 (976)
+++.++-.++ +...+........+ .+....|++.++|.+-.
T Consensus 164 ~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 164 QPTDEDKIEMMKQMIRRLTEICKHEGIAIAD---MKVVAALVKKNFPDFRK 211 (324)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC---HHHHHHHHHHTCSCTTH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHhCCCCHHH
Confidence 9998874333 22222111111111 24556688888887653
No 174
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.07 E-value=1.8e-05 Score=87.39 Aligned_cols=97 Identities=11% Similarity=0.074 Sum_probs=55.5
Q ss_pred ceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCc-------------hhhh-hccCCcceEecCCCCHHHHHHHH
Q 002044 270 KFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRK-------------ETVA-RMMESTDVIFIKELSEQECWALF 335 (976)
Q Consensus 270 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-------------~~v~-~~~~~~~~~~l~~L~~~~~~~Lf 335 (976)
+.+|++|++..-.......+...+...... .++++|.. ..+. ........+.+.+++.++..+++
T Consensus 190 ~~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 268 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQIL 268 (368)
T ss_dssp BCEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHH
T ss_pred CceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHH
Confidence 359999999654444445555555443333 34444431 1111 11123345899999999999999
Q ss_pred HHHhcCCCCCCcchhHHHHHHHHHhhcC-CCchHHHH
Q 002044 336 KRFACFGRSLSECEQLEEIGKKIVGKCK-GLPLAAKT 371 (976)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~-GlPLai~~ 371 (976)
...+........ .+..+.|++.+. |.|-.+..
T Consensus 269 ~~~~~~~~~~~~----~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 269 RIRCEEEDVEMS----EDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp HHHHHHTTCCBC----HHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHcCCCCC----HHHHHHHHHHhcCCCHHHHHH
Confidence 877643222122 344556888887 76654443
No 175
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.04 E-value=8.4e-05 Score=80.13 Aligned_cols=188 Identities=18% Similarity=0.093 Sum_probs=104.5
Q ss_pred cCCccccchhHHHHHHHHHhccc------ccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHH
Q 002044 172 DLSEVRGRVEEKNALKSKLLCKS------SEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEAL 245 (976)
Q Consensus 172 ~~~~~~Gr~~~~~~l~~~L~~~~------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l 245 (976)
.-.+++|.+..++.+.+.+..+. .......+-|.++|.+|+|||+||+.+++ .....| +.+...- +
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~~~~---~~v~~~~---l 87 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANSTF---FSVSSSD---L 87 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH--HHTCEE---EEEEHHH---H
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HHCCCE---EEEchHH---H
Confidence 34579999999999988873111 00122346789999999999999999998 333333 2222211 1
Q ss_pred hCCCCCcccHHHHHHHHHHH-HcCCceEEEEcCCCCCCc-------cC----cHhHHHhhc---CCCCCcEEEEEcCchh
Q 002044 246 EGFAPNLGELNSLLLRIDAF-IARKKFLLILDDVWTDDY-------SK----WEPFRRCLI---NGHRESRILVTTRKET 310 (976)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~-------~~----~~~l~~~l~---~~~~gs~iivTtR~~~ 310 (976)
... ...........+.+. -..++.+|+||++..-.. .. ...+...+. ....+..||.||....
T Consensus 88 ~~~--~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~ 165 (322)
T 3eie_A 88 VSK--WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW 165 (322)
T ss_dssp HTT--TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGG
T ss_pred hhc--ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChh
Confidence 111 112223333333333 345678999999943111 00 122333232 2334556666776532
Q ss_pred hh-hcc--CCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCC-CchHHHHHh
Q 002044 311 VA-RMM--ESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKG-LPLAAKTIG 373 (976)
Q Consensus 311 v~-~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~~ 373 (976)
.. ..+ .....+.+...+.++-.+++...+........ ......|++.+.| .+-.|..+.
T Consensus 166 ~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 166 QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT----KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp GSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC----HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred hCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 21 111 22357788889999999999987743221112 2234568888887 444454443
No 176
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.99 E-value=8.7e-06 Score=89.25 Aligned_cols=85 Identities=18% Similarity=0.157 Sum_probs=45.5
Q ss_pred CCcccCccccCCCccceecC---ccccccC-ccccccCCccEEecCCCCCCcccch-hhcccCCCcEEEecccccccCcc
Q 002044 597 GTNEIPKGIKKLRHLRYLKL---YLVEKLP-ETCCELLNLQTLNMCGSPGLKRLPQ-GIGKLINLRHLMFEVDYLEYMPK 671 (976)
Q Consensus 597 ~~~~lp~~i~~L~~Lr~L~L---~~~~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~l~~~~l~~lp~ 671 (976)
.+..+|. +..+.+|++|+| +.+..+| ..+++|.+|++|+|++|. +..+|. .+++|++|++|+|++|.+..+|.
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 97 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNALESLSW 97 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCccceeCH
Confidence 4445555 555666666666 2344454 345566666666666664 444433 34566666666666666666655
Q ss_pred cccCCCCCCcCC
Q 002044 672 GIERLTSLRTLS 683 (976)
Q Consensus 672 ~i~~l~~L~~L~ 683 (976)
.+.....|+.|.
T Consensus 98 ~~~~~~~L~~l~ 109 (347)
T 2ifg_A 98 KTVQGLSLQELV 109 (347)
T ss_dssp TTTCSCCCCEEE
T ss_pred HHcccCCceEEE
Confidence 433322254443
No 177
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.99 E-value=2.2e-05 Score=84.46 Aligned_cols=159 Identities=13% Similarity=0.096 Sum_probs=88.3
Q ss_pred ccccchhHHHHHHHHHhccc---------ccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccc--cceeehHHHHH
Q 002044 175 EVRGRVEEKNALKSKLLCKS---------SEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFE--KRMWNCESIIE 243 (976)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~---------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~ 243 (976)
+++|.+..++.+.+.+.... -........+.|+|.+|+|||++|+.+++......... ..+.+...
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 58899888888876654210 00012345689999999999999998887321111111 12222211
Q ss_pred HHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCCCC---------CccCcHhHHHhhcCCCCCcEEEEEcCchhhhhc
Q 002044 244 ALEGFAPNLGELNSLLLRIDAFIARKKFLLILDDVWTD---------DYSKWEPFRRCLINGHRESRILVTTRKETVARM 314 (976)
Q Consensus 244 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 314 (976)
.+..... .........+.+. .+.-+|++|++..- .......+...+.....+..||.||........
T Consensus 109 ~l~~~~~--g~~~~~~~~~~~~--~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~ 184 (309)
T 3syl_A 109 DLVGQYI--GHTAPKTKEVLKR--AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENF 184 (309)
T ss_dssp GTCCSST--TCHHHHHHHHHHH--HTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHH
T ss_pred Hhhhhcc--cccHHHHHHHHHh--cCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHH
Confidence 1111111 1111111222221 24569999999521 222334555555555566788888865432111
Q ss_pred -------cCC-cceEecCCCCHHHHHHHHHHHhc
Q 002044 315 -------MES-TDVIFIKELSEQECWALFKRFAC 340 (976)
Q Consensus 315 -------~~~-~~~~~l~~L~~~~~~~Lf~~~~~ 340 (976)
... ...+.+++++.++-.+++...+.
T Consensus 185 ~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 185 FQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp HHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred HhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 111 36899999999999999987763
No 178
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.98 E-value=4e-05 Score=82.89 Aligned_cols=153 Identities=16% Similarity=0.101 Sum_probs=82.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-HHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCC
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDDVW 279 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 279 (976)
...+.|+|++|+||||||+.+++. ....-..+++++. .+...+..... ... ...+...+ .+.-+|++||+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~~~~~~~~~~~~~-~~~----~~~~~~~~-~~~~vL~iDEi~ 108 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSADDFAQAMVEHLK-KGT----INEFRNMY-KSVDLLLLDDVQ 108 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEHHHHHHHHHHHHH-HTC----HHHHHHHH-HTCSEEEEECGG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEHHHHHHHHHHHHH-cCc----HHHHHHHh-cCCCEEEEcCcc
Confidence 456899999999999999999983 3221112345544 22211110000 000 11222222 246799999995
Q ss_pred CCCc--cCcHhHHHhhcC-CCCCcEEEEEcCchh---------hhhccCCcceEecCCCCHHHHHHHHHHHhcCCCCCCc
Q 002044 280 TDDY--SKWEPFRRCLIN-GHRESRILVTTRKET---------VARMMESTDVIFIKELSEQECWALFKRFACFGRSLSE 347 (976)
Q Consensus 280 ~~~~--~~~~~l~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 347 (976)
.-.. ...+.+...+.. ...|..||+||.... +...+....++.+++ +.++..+++...+........
T Consensus 109 ~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~ 187 (324)
T 1l8q_A 109 FLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELR 187 (324)
T ss_dssp GGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCC
T ss_pred cccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCC
Confidence 4221 112223333221 123457888876432 111222235789999 999999999887643222122
Q ss_pred chhHHHHHHHHHhhcCCCch
Q 002044 348 CEQLEEIGKKIVGKCKGLPL 367 (976)
Q Consensus 348 ~~~~~~~~~~i~~~c~GlPL 367 (976)
.+..+.|++.+ |..-
T Consensus 188 ----~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 188 ----KEVIDYLLENT-KNVR 202 (324)
T ss_dssp ----HHHHHHHHHHC-SSHH
T ss_pred ----HHHHHHHHHhC-CCHH
Confidence 33455677777 6654
No 179
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.97 E-value=7.6e-07 Score=97.26 Aligned_cols=143 Identities=22% Similarity=0.160 Sum_probs=85.9
Q ss_pred CCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCC-CCCC--CCCCCcceeeccccccceEeCccccCCCc
Q 002044 769 LQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEV-MPAL--GILPSLEVLKIRFMKSVKRVGNEFLGTEI 845 (976)
Q Consensus 769 l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~-l~~l--~~L~~L~~L~L~~~~~l~~~~~~~~~~~~ 845 (976)
+.++|+|+.|.|+++....+ +. + .+++|+.|+|..|..... +..+ ..+|+|++|+|+.+.... .+.. +...
T Consensus 168 l~~~P~L~~L~L~g~~~l~l-~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~-~~~~--~~~~ 241 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSI-GK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDY-GFDG--DMNV 241 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBC-CS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGG-TCCS--CGGG
T ss_pred HhcCCCCcEEEEeCCCCcee-cc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecccccc-ccch--hHHH
Confidence 45678999999998854444 44 3 378999999998763221 2222 368999999986432110 0000 0000
Q ss_pred CcccccccCCCCCCCCCccCccCCccceeeecccccccccccCCCccccCCCcceEeeecCCCCCC-----CCcCCCCCC
Q 002044 846 SDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNS-----LPDQLLQST 920 (976)
Q Consensus 846 ~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~-----lp~~l~~l~ 920 (976)
+.. ......||+|+.|.+.++.--......-.....+|+|++|+|+.|. ++. ++.++.+++
T Consensus 242 l~~-------------~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~ 307 (362)
T 2ra8_A 242 FRP-------------LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIK 307 (362)
T ss_dssp TGG-------------GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHT
T ss_pred HHH-------------HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCC
Confidence 000 0001258999999998754221111000001368999999998765 654 556666789
Q ss_pred CCCeEEEccCc
Q 002044 921 TLEELEIIRCP 931 (976)
Q Consensus 921 ~L~~L~l~~c~ 931 (976)
+|+.|++++|.
T Consensus 308 ~L~~L~L~~n~ 318 (362)
T 2ra8_A 308 HLKFINMKYNY 318 (362)
T ss_dssp TCSEEECCSBB
T ss_pred cceEEECCCCc
Confidence 99999999984
No 180
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.94 E-value=9.7e-05 Score=80.67 Aligned_cols=187 Identities=18% Similarity=0.083 Sum_probs=100.6
Q ss_pred CCccccchhHHHHHHHHHhcc----c--ccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHh
Q 002044 173 LSEVRGRVEEKNALKSKLLCK----S--SEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALE 246 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~----~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~ 246 (976)
-.+++|.+..++.|.+.+..+ . .......+-|.|+|++|+|||+||+.+++ .....| +.+... .+.
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~--~~~~~~---~~v~~~---~l~ 121 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANSTF---FSVSSS---DLV 121 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH--HHTCEE---EEEEHH---HHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH--HhCCCE---EEeeHH---HHh
Confidence 357999999999998877421 0 00012334588999999999999999998 333332 222221 111
Q ss_pred CCCCCcccHHHHHHHHHH-HHcCCceEEEEcCCCCCCcc-----------CcHhHHHhhc---CCCCCcEEEEEcCchh-
Q 002044 247 GFAPNLGELNSLLLRIDA-FIARKKFLLILDDVWTDDYS-----------KWEPFRRCLI---NGHRESRILVTTRKET- 310 (976)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~-----------~~~~l~~~l~---~~~~gs~iivTtR~~~- 310 (976)
....+ ........+.. .-..++.+|+||++..-... ....+...+. ....+..||.||....
T Consensus 122 ~~~~g--~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ 199 (355)
T 2qp9_X 122 SKWMG--ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQ 199 (355)
T ss_dssp SCC-----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGG
T ss_pred hhhcc--hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCccc
Confidence 11111 11222333333 23457889999999432110 0122222222 1234455666666432
Q ss_pred hhhcc--CCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCC-CchHHHHHh
Q 002044 311 VARMM--ESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKG-LPLAAKTIG 373 (976)
Q Consensus 311 v~~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~~ 373 (976)
+...+ .....+.+...+.++-.+++...+........ ......|++.+.| .+-.|..+.
T Consensus 200 ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~----~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 200 LDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT----KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp SCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 11111 22457788999999999999887633221112 2334558888888 444455444
No 181
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.94 E-value=0.00017 Score=76.84 Aligned_cols=181 Identities=15% Similarity=0.123 Sum_probs=101.4
Q ss_pred CCccccchhHHHHHHHHHhcccc-------cCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-HHHHH
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSS-------EQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SIIEA 244 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~ 244 (976)
-.+++|.+..++++.+.+..+-. .+-...+.|.|+|++|+|||+||+.+++. ....| +.+.. ++...
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~~---i~v~~~~l~~~ 88 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQANF---ISIKGPELLTM 88 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCEE---EEECHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCCE---EEEEhHHHHhh
Confidence 35699999988888887753200 00123457899999999999999999983 33222 23333 44444
Q ss_pred HhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCCCCC--------------ccCcHhHHHhhcC--CCCCcEEEEEcCc
Q 002044 245 LEGFAPNLGELNSLLLRIDAFIARKKFLLILDDVWTDD--------------YSKWEPFRRCLIN--GHRESRILVTTRK 308 (976)
Q Consensus 245 l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------------~~~~~~l~~~l~~--~~~gs~iivTtR~ 308 (976)
..+... ......+.......+.+|++|++..-. ......+...+.. ...+..||.||..
T Consensus 89 ~~g~~~-----~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~ 163 (301)
T 3cf0_A 89 WFGESE-----ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNR 163 (301)
T ss_dssp HHTTCT-----THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESC
T ss_pred hcCchH-----HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCC
Confidence 333221 112222333334578999999994200 0012333333332 2345677777765
Q ss_pred hhhh-hc-cC---CcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchH
Q 002044 309 ETVA-RM-ME---STDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLA 368 (976)
Q Consensus 309 ~~v~-~~-~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 368 (976)
.... .. .. ....+.+...+.++-.+++...+.... ......+. .+++.+.|.|-+
T Consensus 164 ~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~-~~~~~~~~----~la~~~~g~sg~ 223 (301)
T 3cf0_A 164 PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP-VAKDVDLE----FLAKMTNGFSGA 223 (301)
T ss_dssp GGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCSSCCHH----HHHHTCSSCCHH
T ss_pred ccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCC-CCccchHH----HHHHHcCCCCHH
Confidence 4322 21 11 235788999999998899887663221 11122233 355666666543
No 182
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.93 E-value=8.6e-05 Score=80.84 Aligned_cols=174 Identities=14% Similarity=0.128 Sum_probs=102.2
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhc-cccc-ceeehHHHHHHHhCCCCC
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVIS-NFEK-RMWNCESIIEALEGFAPN 251 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~-~~wv~~~~~~~l~~~~~~ 251 (976)
.+++|.+..++.+...+... ..+-+.++|++|+||||+|+.+++. +.. .+.. +..+ ...+
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~--l~~~~~~~~~~~~----------~~~~ 86 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALARE--IYGKNYSNMVLEL----------NASD 86 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHH--HHTTSHHHHEEEE----------CTTS
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHH--HcCCCccceEEEE----------cCcc
Confidence 45789988888888888632 2333899999999999999999873 211 1110 0000 0111
Q ss_pred cccHHHHHHHHHHHH------cCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCchh-hhhc-cCCcceEec
Q 002044 252 LGELNSLLLRIDAFI------ARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKET-VARM-MESTDVIFI 323 (976)
Q Consensus 252 ~~~~~~~~~~l~~~l------~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~-~~~~~~~~l 323 (976)
....+.....+.... .+.+-++|+|++..-.....+.+...+.......++|++|.... +... ......+.+
T Consensus 87 ~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~ 166 (340)
T 1sxj_C 87 DRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRF 166 (340)
T ss_dssp CCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred cccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEec
Confidence 112233333333322 13467899999954333344556555554445567777776432 2111 123457899
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHH
Q 002044 324 KELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAA 369 (976)
Q Consensus 324 ~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 369 (976)
.+++.++..+.+...+-.... ..+ .+..+.|++.++|.+--+
T Consensus 167 ~~l~~~~~~~~l~~~~~~~~~-~i~---~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 167 QPLPQEAIERRIANVLVHEKL-KLS---PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp CCCCHHHHHHHHHHHHHTTTC-CBC---HHHHHHHHHHHTTCHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHH
Confidence 999999998888776532221 111 334566888999988643
No 183
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.92 E-value=1e-05 Score=80.91 Aligned_cols=118 Identities=17% Similarity=0.165 Sum_probs=61.5
Q ss_pred hHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-HHHHHHhCCCCCcccHHHHH
Q 002044 181 EEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SIIEALEGFAPNLGELNSLL 259 (976)
Q Consensus 181 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~l~~~~~~~~~~~~~~ 259 (976)
..++.+.+++..... ....+.+.|+|.+|+|||+||+.+++ ........++|+.. .+...+...... .......
T Consensus 36 ~~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 110 (202)
T 2w58_A 36 KAIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYVPELFRELKHSLQD-QTMNEKL 110 (202)
T ss_dssp HHHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEHHHHHHHHHHC----CCCHHHH
T ss_pred HHHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEhHHHHHHHHHHhcc-chHHHHH
Confidence 344555555553321 11226789999999999999999998 34333344566655 343433321111 1122222
Q ss_pred HHHHHHHcCCceEEEEcCCCCCCccCcHh--HHH-hhcCC-CCCcEEEEEcCc
Q 002044 260 LRIDAFIARKKFLLILDDVWTDDYSKWEP--FRR-CLING-HRESRILVTTRK 308 (976)
Q Consensus 260 ~~l~~~l~~k~~LlVlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~iivTtR~ 308 (976)
+.+.+. -+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 111 ----~~~~~~-~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 111 ----DYIKKV-PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ----HHHHHS-SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred ----HHhcCC-CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 222222 499999996543334322 222 22111 234578888874
No 184
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.92 E-value=0.00011 Score=80.38 Aligned_cols=188 Identities=13% Similarity=0.087 Sum_probs=101.5
Q ss_pred CCccccchhHHHHHHHHHhccccc------CCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHh
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSSE------QTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALE 246 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~ 246 (976)
..+++|.+..++.+.+.+..+... .....+.|.|+|.+|+|||++|+.+++. ....| +.+... .+.
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~i~~~---~l~ 154 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGATF---FSISAS---SLT 154 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTCEE---EEEEGG---GGC
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCCeE---EEEehH---Hhh
Confidence 356899999999998887531000 0123567899999999999999999873 32222 122210 011
Q ss_pred CCCCCcccHHHHHHHHHHH-HcCCceEEEEcCCCCCCc-----------cCcHhHHHhhcCC----CCCcEEEEEcCchh
Q 002044 247 GFAPNLGELNSLLLRIDAF-IARKKFLLILDDVWTDDY-----------SKWEPFRRCLING----HRESRILVTTRKET 310 (976)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~l~~~----~~gs~iivTtR~~~ 310 (976)
... ..........+... -..++.+|+||++..-.. .....+...+... ..+..||.||....
T Consensus 155 ~~~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~ 232 (357)
T 3d8b_A 155 SKW--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ 232 (357)
T ss_dssp CSS--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGG
T ss_pred ccc--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChh
Confidence 110 11122222233322 235678999999932100 0112233333221 23445665665432
Q ss_pred -hhhcc--CCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCC-CchHHHHHhh
Q 002044 311 -VARMM--ESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKG-LPLAAKTIGS 374 (976)
Q Consensus 311 -v~~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~~~ 374 (976)
+...+ .....+.+...+.++..+++...+........ .+..+.|++.+.| .+-.|..+..
T Consensus 233 ~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 233 EIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS----EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp GBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred hCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 21111 12347788999999999998877632211111 2345568888888 4555655543
No 185
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.92 E-value=7.6e-05 Score=78.41 Aligned_cols=171 Identities=13% Similarity=0.119 Sum_probs=88.9
Q ss_pred CccccchhHHHHHHH-------HHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHh
Q 002044 174 SEVRGRVEEKNALKS-------KLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALE 246 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~-------~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~ 246 (976)
..++|.....+++.. .+.... ....+.+.|+|.+|+|||++|+.+++. ....| +...+.+ .+.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~~--~~i~~~~---~~~ 102 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEE--SNFPF--IKICSPD---KMI 102 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHH--HTCSE--EEEECGG---GCT
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCE--EEEeCHH---Hhc
Confidence 357777766665555 332111 235678999999999999999999983 22222 1111111 000
Q ss_pred CCCCCccc-HHHHHHHHHHHHcCCceEEEEcCCCCC------C---ccC-cHhHHHhhcC---CCCCcEEEEEcCchhhh
Q 002044 247 GFAPNLGE-LNSLLLRIDAFIARKKFLLILDDVWTD------D---YSK-WEPFRRCLIN---GHRESRILVTTRKETVA 312 (976)
Q Consensus 247 ~~~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~------~---~~~-~~~l~~~l~~---~~~gs~iivTtR~~~v~ 312 (976)
+. .... .......+......+..+|++|++..- . ... .+.+...+.. ......||.||......
T Consensus 103 g~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l 180 (272)
T 1d2n_A 103 GF--SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVL 180 (272)
T ss_dssp TC--CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHH
T ss_pred CC--chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhc
Confidence 00 0001 112222333334467889999998321 0 011 1223232221 22234567777765432
Q ss_pred hc---cCC-cceEecCCCCH-HHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCC
Q 002044 313 RM---MES-TDVIFIKELSE-QECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGL 365 (976)
Q Consensus 313 ~~---~~~-~~~~~l~~L~~-~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 365 (976)
.. ... ...+.+++++. ++..+++.... . .. .+....|++.+.|.
T Consensus 181 ~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~-~~----~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 181 QEMEMLNAFSTTIHVPNIATGEQLLEALELLG----N-FK----DKERTTIAQQVKGK 229 (272)
T ss_dssp HHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C-SC----HHHHHHHHHHHTTS
T ss_pred chhhhhcccceEEcCCCccHHHHHHHHHHhcC----C-CC----HHHHHHHHHHhcCC
Confidence 22 122 45788999998 66666665431 1 11 23355677788773
No 186
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.91 E-value=0.00018 Score=77.41 Aligned_cols=190 Identities=21% Similarity=0.135 Sum_probs=101.5
Q ss_pred cCCccccchhHHHHHHHHHhcccc------cCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHH
Q 002044 172 DLSEVRGRVEEKNALKSKLLCKSS------EQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEAL 245 (976)
Q Consensus 172 ~~~~~~Gr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l 245 (976)
.-.+++|.+..++.|.+.+..+.. ......+-|.++|++|+|||+||+.+++... ...|- .+... .+
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~~~~---~i~~~---~l 82 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NSTFF---SISSS---DL 82 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SCEEE---EEECC---SS
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CCcEE---EEEhH---HH
Confidence 345789999998888877642110 0012346789999999999999999998320 22221 11110 00
Q ss_pred hCCCCCcccHHHHHHHHHHH-HcCCceEEEEcCCCCCCc------cC-c----HhHHHhhcC---CCCCcEEEEEcCchh
Q 002044 246 EGFAPNLGELNSLLLRIDAF-IARKKFLLILDDVWTDDY------SK-W----EPFRRCLIN---GHRESRILVTTRKET 310 (976)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~------~~-~----~~l~~~l~~---~~~gs~iivTtR~~~ 310 (976)
... ...........+.+. -..++.+|++|++..-.. .. . ..+...+.. ...+..||.||....
T Consensus 83 ~~~--~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 83 VSK--WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp CCS--SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred Hhh--hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 011 011222333333333 346788999999953200 00 1 112222222 234455665665432
Q ss_pred h-hhcc--CCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCC-chHHHHHhh
Q 002044 311 V-ARMM--ESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGL-PLAAKTIGS 374 (976)
Q Consensus 311 v-~~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~~~ 374 (976)
. ...+ .....+.+...+.++-.+++...+........ ......|++.+.|. +-.|..+..
T Consensus 161 ~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 161 VLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT----EADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp TSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC----HHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred cCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 1 1111 22357888889999999999877632221111 23445688888886 444555443
No 187
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.88 E-value=1.4e-05 Score=87.53 Aligned_cols=87 Identities=18% Similarity=0.187 Sum_probs=62.0
Q ss_pred HhcCCCcceEEecCcccccCCCCcccC-ccccCCCccceecC--ccccccCc-cccccCCccEEecCCCCCCcccchhhc
Q 002044 576 FDQLTGLRVLRIEGMKSLIGSGTNEIP-KGIKKLRHLRYLKL--YLVEKLPE-TCCELLNLQTLNMCGSPGLKRLPQGIG 651 (976)
Q Consensus 576 ~~~l~~Lr~L~L~~~~~l~~~~~~~lp-~~i~~L~~Lr~L~L--~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~i~ 651 (976)
+..+++|+.|+|++ .+.+..+| ..+++|.+|++|+| +.+..+|+ .+.+|.+|+.|+|++|. +..+|..+.
T Consensus 27 l~~~~~L~~L~l~~-----~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~ 100 (347)
T 2ifg_A 27 LPGAENLTELYIEN-----QQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTV 100 (347)
T ss_dssp SCSCSCCSEEECCS-----CSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTT
T ss_pred CCCCCCeeEEEccC-----CCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cceeCHHHc
Confidence 66677788888872 15566666 45778888888888 56666654 56788888888888886 777777655
Q ss_pred ccCCCcEEEeccccccc
Q 002044 652 KLINLRHLMFEVDYLEY 668 (976)
Q Consensus 652 ~l~~L~~L~l~~~~l~~ 668 (976)
...+|++|++.+|.+..
T Consensus 101 ~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 101 QGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CSCCCCEEECCSSCCCC
T ss_pred ccCCceEEEeeCCCccC
Confidence 44448888887776653
No 188
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.84 E-value=0.00022 Score=79.20 Aligned_cols=198 Identities=14% Similarity=0.194 Sum_probs=104.5
Q ss_pred HhcCCCcceEEecCcccccCCCCcccCc-cccCCCccceecC-ccccccC-ccccccCCccEEecCCCCCCcccchhhcc
Q 002044 576 FDQLTGLRVLRIEGMKSLIGSGTNEIPK-GIKKLRHLRYLKL-YLVEKLP-ETCCELLNLQTLNMCGSPGLKRLPQGIGK 652 (976)
Q Consensus 576 ~~~l~~Lr~L~L~~~~~l~~~~~~~lp~-~i~~L~~Lr~L~L-~~~~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~i~~ 652 (976)
|.++ +|+.+.+.. .+..++. .+.+ .+|+.+.+ ..+..++ ..+.++.+|+.+++.++. +..+|...-.
T Consensus 132 F~~~-~L~~i~l~~-------~i~~I~~~aF~~-~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~ 201 (401)
T 4fdw_A 132 FRNS-QIAKVVLNE-------GLKSIGDMAFFN-STVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFV 201 (401)
T ss_dssp TTTC-CCSEEECCT-------TCCEECTTTTTT-CCCCEEECCTTCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTT
T ss_pred cccC-CccEEEeCC-------CccEECHHhcCC-CCceEEEeCCCccEehHHHhhCcccCCeeecCCCc-ceEechhhEe
Confidence 5554 577777652 1434442 3344 35777777 5566665 356677777777777665 7777766555
Q ss_pred cCCCcEEEecccccccCcc-cccCCCCCCcCCceEEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhc
Q 002044 653 LINLRHLMFEVDYLEYMPK-GIERLTSLRTLSEFVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSA 731 (976)
Q Consensus 653 l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~ 731 (976)
..+|+.+.+.. .+..++. .+..+++|+.+.+-. +++.+.. .
T Consensus 202 ~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~----------------------------------~l~~I~~---~ 243 (401)
T 4fdw_A 202 YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPE----------------------------------NVSTIGQ---E 243 (401)
T ss_dssp TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCT----------------------------------TCCEECT---T
T ss_pred ecccCEEEeCC-chheehhhHhhCCCCCCEEecCC----------------------------------CccCccc---c
Confidence 67777777743 2444443 344555555443110 0000000 1
Q ss_pred cCCCCCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEEEeecCCC-----CCCcccccccccccEEEEeC
Q 002044 732 HLDKKKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQITGFKGR-----TLMLSWIVSLNKLKKLRLLF 806 (976)
Q Consensus 732 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~-----~~~p~~~~~l~~L~~L~L~~ 806 (976)
.+.. .+|+.+.+..+- ... -...+..+++|+.+.+.++... .+.+..+..|++|+.+.|.+
T Consensus 244 aF~~-~~L~~i~lp~~i-~~I------------~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 244 AFRE-SGITTVKLPNGV-TNI------------ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp TTTT-CCCSEEEEETTC-CEE------------CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred cccc-CCccEEEeCCCc-cEE------------ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence 1222 356666653211 000 0123455667777777665443 23244555677788777764
Q ss_pred CCCCCCCC--CCCCCCCcceeeccccccceEeCcc
Q 002044 807 CDKCEVMP--ALGILPSLEVLKIRFMKSVKRVGNE 839 (976)
Q Consensus 807 ~~~~~~l~--~l~~L~~L~~L~L~~~~~l~~~~~~ 839 (976)
+ +..++ .+..+++|+.+.|.. +++.++..
T Consensus 310 ~--i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~ 340 (401)
T 4fdw_A 310 S--IRILGQGLLGGNRKVTQLTIPA--NVTQINFS 340 (401)
T ss_dssp T--CCEECTTTTTTCCSCCEEEECT--TCCEECTT
T ss_pred c--eEEEhhhhhcCCCCccEEEECc--cccEEcHH
Confidence 2 44443 366677788887754 25566543
No 189
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.83 E-value=0.00025 Score=75.49 Aligned_cols=187 Identities=16% Similarity=0.136 Sum_probs=98.5
Q ss_pred CCccccchhHHHHHHHHHhcccc------cCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHh
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSS------EQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALE 246 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~ 246 (976)
-.+++|.+..++.+.+.+..+.. .-....+.|.|+|++|+||||+|+.+++. ....|- .+... .+.
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~~~---~i~~~---~l~ 91 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSATFL---NISAA---SLT 91 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCEEE---EEEST---TTS
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCeE---EeeHH---HHh
Confidence 35799999999999888743210 00113457899999999999999999883 332221 11110 000
Q ss_pred CCCCCcccHHHHHHHHH-HHHcCCceEEEEcCCCCCCcc-------CcH----hHHHhh---cCC--CCCcEEEEEcCch
Q 002044 247 GFAPNLGELNSLLLRID-AFIARKKFLLILDDVWTDDYS-------KWE----PFRRCL---ING--HRESRILVTTRKE 309 (976)
Q Consensus 247 ~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~~~-------~~~----~l~~~l---~~~--~~gs~iivTtR~~ 309 (976)
.. ...........+. .....++.+|++|++..-... .-. .+...+ +.. +.+..||.||...
T Consensus 92 ~~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~ 169 (297)
T 3b9p_A 92 SK--YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRP 169 (297)
T ss_dssp SS--SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCG
T ss_pred hc--ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCCh
Confidence 11 1112222233332 233457789999999431100 001 122211 111 1335566677653
Q ss_pred h-hhhcc--CCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCch-HHHHHh
Q 002044 310 T-VARMM--ESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPL-AAKTIG 373 (976)
Q Consensus 310 ~-v~~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~ 373 (976)
. +.... .....+.+...+.++..+++...+........ .+....+++.+.|.+- ++..+.
T Consensus 170 ~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 170 QELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD----TEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp GGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 2 11111 12356777888888888888776532211111 2345568888888775 444443
No 190
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.81 E-value=0.00024 Score=76.89 Aligned_cols=177 Identities=11% Similarity=0.081 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccc-----ccee-ehHHHHHH-------Hh
Q 002044 180 VEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFE-----KRMW-NCESIIEA-------LE 246 (976)
Q Consensus 180 ~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-----~~~w-v~~~~~~~-------l~ 246 (976)
++..+.+...+... .-...+.++|+.|+||||+|+.+++. ...... +... .+..+... +.
T Consensus 8 ~~~~~~l~~~i~~~-----~~~~a~L~~G~~G~GKt~~a~~la~~--l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~ 80 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-----RGHHALLIQALPGMGDDALIYALSRY--LLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLA 80 (334)
T ss_dssp HHHHHHHHHHHHTT-----CCCSEEEEECCTTSCHHHHHHHHHHH--HTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEEC
T ss_pred HHHHHHHHHHHHcC-----CcceeEEEECCCCchHHHHHHHHHHH--HhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEe
Confidence 44556666666532 23457899999999999999998863 211110 0000 00011000 00
Q ss_pred CCC-CCcccHHHHHHHHHHHHc-----CCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCchh-hhhcc-CCc
Q 002044 247 GFA-PNLGELNSLLLRIDAFIA-----RKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKET-VARMM-EST 318 (976)
Q Consensus 247 ~~~-~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~-~~~ 318 (976)
... ......++. ..+.+.+. +++-++|+|++..-.....+.+...+.....++.+|++|.+.. +...+ ...
T Consensus 81 ~~~~~~~~~i~~i-r~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc 159 (334)
T 1a5t_A 81 PEKGKNTLGVDAV-REVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 (334)
T ss_dssp CCTTCSSBCHHHH-HHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTS
T ss_pred ccccCCCCCHHHH-HHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcc
Confidence 000 011223332 33444432 4577999999955444445667777766556677777776542 32222 335
Q ss_pred ceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHHh
Q 002044 319 DVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTIG 373 (976)
Q Consensus 319 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 373 (976)
..+.+.+++.++..+.+.... . .. .+.+..+++.++|.|..+..+.
T Consensus 160 ~~~~~~~~~~~~~~~~L~~~~---~--~~----~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 160 RLHYLAPPPEQYAVTWLSREV---T--MS----QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp EEEECCCCCHHHHHHHHHHHC---C--CC----HHHHHHHHHHTTTCHHHHHHTT
T ss_pred eeeeCCCCCHHHHHHHHHHhc---C--CC----HHHHHHHHHHcCCCHHHHHHHh
Confidence 689999999999999998764 1 11 2344568999999997665543
No 191
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.81 E-value=7e-06 Score=90.41 Aligned_cols=39 Identities=13% Similarity=0.159 Sum_probs=20.6
Q ss_pred cCceeEEEecCcccchhhhHHHHHHHHh-cCCCcceEEecC
Q 002044 550 ARKLRSLMLSYNTLNQKASAQVLQGLFD-QLTGLRVLRIEG 589 (976)
Q Consensus 550 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~ 589 (976)
+++|++|++++|.+....... +...+. ..++|+.|+|++
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~-l~~~L~~~~~~L~~L~Ls~ 110 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTV-VAAVLGSGRHALDEVNLAS 110 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHH-HHHHHSSCSSCEEEEECTT
T ss_pred HhhCCEEEecCCCCCHHHHHH-HHHHHhhCCCCceEEEecC
Confidence 345667777777654433322 222232 335677777773
No 192
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.79 E-value=4.5e-06 Score=91.95 Aligned_cols=138 Identities=19% Similarity=0.158 Sum_probs=87.0
Q ss_pred CceeEEEEEccCCCCC-c-ccccccCceeEEEecCcccchhhhHHHHHHHH-hcCCCcceEEecCcccccCCCCcccCcc
Q 002044 528 EKLRHLMLVLGYKNSF-P-VSIFYARKLRSLMLSYNTLNQKASAQVLQGLF-DQLTGLRVLRIEGMKSLIGSGTNEIPKG 604 (976)
Q Consensus 528 ~~~r~l~~~~~~~~~~-~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~-~~l~~Lr~L~L~~~~~l~~~~~~~lp~~ 604 (976)
..++.+.+..+..... . .....+++|+.|++++|.+....... +...+ ...++|+.|+|++|. ++..+...++..
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~-L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~ 178 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKD-LRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEG 178 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHH-HHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHH-HHHHHHhcCCccceeeCCCCC-CChHHHHHHHHH
Confidence 4577777766655421 1 11123567888888888876544333 23323 457788889888542 222223345566
Q ss_pred ccCCCccceecC--cccc-----ccCccccccCCccEEecCCCCCCcc-----cchhhcccCCCcEEEeccccccc
Q 002044 605 IKKLRHLRYLKL--YLVE-----KLPETCCELLNLQTLNMCGSPGLKR-----LPQGIGKLINLRHLMFEVDYLEY 668 (976)
Q Consensus 605 i~~L~~Lr~L~L--~~~~-----~lp~~i~~L~~L~~L~l~~~~~l~~-----lp~~i~~l~~L~~L~l~~~~l~~ 668 (976)
+..+++|++|+| +.+. .++..+....+|++|+|++|. +.. ++..+...++|++|++++|.+..
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 677888888888 3333 345566677788888888887 542 44556667888888888877654
No 193
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.76 E-value=1.7e-05 Score=77.63 Aligned_cols=121 Identities=16% Similarity=0.188 Sum_probs=62.6
Q ss_pred chhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-HHHHHHhCCCCCcccHHH
Q 002044 179 RVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SIIEALEGFAPNLGELNS 257 (976)
Q Consensus 179 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~l~~~~~~~~~~~~ 257 (976)
....++.+.+++..-.. .....+.|+|++|+||||||+.+++.......+ .++++.. ++...+...... .....
T Consensus 19 ~~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~-~~~~~ 93 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFDTKDLIFRLKHLMDE-GKDTK 93 (180)
T ss_dssp HHHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEEHHHHHHHHHHHHHH-TCCSH
T ss_pred HHHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEEHHHHHHHHHHHhcC-chHHH
Confidence 44455555555543221 234688999999999999999999832112222 2444544 333322210000 00001
Q ss_pred HHHHHHHHHcCCceEEEEcCCCCCCccCcH--hHHHhhcCC-CCCcEEEEEcCch
Q 002044 258 LLLRIDAFIARKKFLLILDDVWTDDYSKWE--PFRRCLING-HRESRILVTTRKE 309 (976)
Q Consensus 258 ~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtR~~ 309 (976)
+.+.+. +.-+|||||++....+.|. .+...+... ..|..||+||...
T Consensus 94 ----~~~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 94 ----FLKTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp ----HHHHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred ----HHHHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 112222 5678999999743333443 233323221 2467899998753
No 194
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.76 E-value=1.9e-05 Score=75.46 Aligned_cols=86 Identities=12% Similarity=0.205 Sum_probs=57.7
Q ss_pred CceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCC----CccceecCccccccCc--
Q 002044 551 RKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKL----RHLRYLKLYLVEKLPE-- 624 (976)
Q Consensus 551 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L----~~Lr~L~L~~~~~lp~-- 624 (976)
.+|+.|+++++.+....... +.++++|+.|+|++|..+++.++.. ++.+ ++|++|+|+.+..+.+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~-----L~~~~~L~~L~L~~C~~ItD~gL~~----L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDH-----MEGLQYVEKIRLCKCHYIEDGCLER----LSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGG-----GTTCSCCCEEEEESCTTCCHHHHHH----HHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred ceEeEEeCcCCCccHHHHHH-----hcCCCCCCEEEeCCCCccCHHHHHH----HHhcccccCCCCEEEcCCCCcCCHHH
Confidence 46899999988865544333 5788999999999888777655533 3333 3577777766555543
Q ss_pred --cccccCCccEEecCCCCCCcc
Q 002044 625 --TCCELLNLQTLNMCGSPGLKR 645 (976)
Q Consensus 625 --~i~~L~~L~~L~l~~~~~l~~ 645 (976)
.+.++++|++|++++|+.++.
T Consensus 132 l~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCCc
Confidence 355667777777777765554
No 195
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.74 E-value=0.00048 Score=77.54 Aligned_cols=188 Identities=16% Similarity=0.112 Sum_probs=98.0
Q ss_pred CCccccchhHHHHHHHHHhcccc------cCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-HHHHHH
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSS------EQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SIIEAL 245 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~l 245 (976)
-.+++|.+..++.+.+.+..+.. ......+-|.++|++|+|||+||+.+++... ...| +.+.. .+....
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~-~~~~---~~v~~~~l~~~~ 208 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NSTF---FSISSSDLVSKW 208 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC-SSEE---EEECCC------
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC-CCCE---EEEeHHHHHhhh
Confidence 45799999999999887742100 0012346789999999999999999998320 1122 11211 222211
Q ss_pred hCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCCCCC-------ccCcHhHHHh----hcC---CCCCcEEEEEcCchhh
Q 002044 246 EGFAPNLGELNSLLLRIDAFIARKKFLLILDDVWTDD-------YSKWEPFRRC----LIN---GHRESRILVTTRKETV 311 (976)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------~~~~~~l~~~----l~~---~~~gs~iivTtR~~~v 311 (976)
.+.. ...... .+...-..++.+|+||++..-. ......+... +.. ...+..||.||.....
T Consensus 209 ~g~~--~~~~~~---~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ 283 (444)
T 2zan_A 209 LGES--EKLVKN---LFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWV 283 (444)
T ss_dssp ---C--CCTHHH---HHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGG
T ss_pred cchH--HHHHHH---HHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccc
Confidence 1111 111111 1222224578899999995321 0111222222 211 1345567767764322
Q ss_pred h-hcc--CCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCC-chHHHHHh
Q 002044 312 A-RMM--ESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGL-PLAAKTIG 373 (976)
Q Consensus 312 ~-~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~~ 373 (976)
. ..+ .....+.+...+.++..++|...+........ ......|++.+.|. +-.|..+.
T Consensus 284 ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 284 LDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT----EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp SCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 1 111 22347788888888888888877632211111 23345688888884 44554443
No 196
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.72 E-value=0.00042 Score=76.86 Aligned_cols=186 Identities=16% Similarity=0.171 Sum_probs=97.8
Q ss_pred CCccccchhHHHHHHHHHhccccc------CCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-HHHHHH
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSSE------QTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SIIEAL 245 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~l 245 (976)
-.+++|.+..++.+.+++..+... .....+-|.|+|.+|+|||++|+.+++ +....| +.+.. .+....
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~--~~~~~~---~~v~~~~l~~~~ 188 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA--ESNATF---FNISAASLTSKY 188 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH--HTTCEE---EEECSCCC----
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH--hhcCcE---EEeeHHHhhccc
Confidence 457999999999999887422100 011245789999999999999999987 333222 11211 111000
Q ss_pred hCCCCCcccHHHHHHHHHHH-HcCCceEEEEcCCCCCC-------ccCc----HhHHHhhc---C-CCCCcEEEEEcCch
Q 002044 246 EGFAPNLGELNSLLLRIDAF-IARKKFLLILDDVWTDD-------YSKW----EPFRRCLI---N-GHRESRILVTTRKE 309 (976)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~-------~~~~----~~l~~~l~---~-~~~gs~iivTtR~~ 309 (976)
..........+.+. -...+.+|+||++..-. .... ..+...+. . ......||.||...
T Consensus 189 ------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~ 262 (389)
T 3vfd_A 189 ------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRP 262 (389)
T ss_dssp ---------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCG
T ss_pred ------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCc
Confidence 01112222333332 23466899999994210 0001 11222221 1 12234566566543
Q ss_pred h-hhhcc-CC-cceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCch-HHHHHh
Q 002044 310 T-VARMM-ES-TDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPL-AAKTIG 373 (976)
Q Consensus 310 ~-v~~~~-~~-~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~ 373 (976)
. +...+ .. ...+.+...+.++..+++...+........ .+....|++.+.|..- +|..+.
T Consensus 263 ~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 263 QELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT----QKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp GGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 2 21111 12 346889999999999999877633222111 2345568888888544 554443
No 197
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.72 E-value=5.3e-06 Score=90.59 Aligned_cols=149 Identities=17% Similarity=0.140 Sum_probs=87.7
Q ss_pred cccccccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceEeCccccCCCcCcccccccCCCCCCCCCccCccCC
Q 002044 790 LSWIVSLNKLKKLRLLFCDKCEVMPALGILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIHIQDGSMSSSSSSSANIAFP 869 (976)
Q Consensus 790 p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp 869 (976)
+.++..+++|+.|+|++|... .++.+ .+++|++|+|..|. +..-+-.... ...+|
T Consensus 165 ~~ll~~~P~L~~L~L~g~~~l-~l~~~-~~~~L~~L~L~~~~-l~~~~l~~l~----------------------~~~lp 219 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTNNL-SIGKK-PRPNLKSLEIISGG-LPDSVVEDIL----------------------GSDLP 219 (362)
T ss_dssp HHHHHTCTTCCEEEEECCBTC-BCCSC-BCTTCSEEEEECSB-CCHHHHHHHH----------------------HSBCT
T ss_pred HHHHhcCCCCcEEEEeCCCCc-eeccc-cCCCCcEEEEecCC-CChHHHHHHH----------------------HccCC
Confidence 345557899999999998433 34444 38999999998765 2111000000 01489
Q ss_pred ccceeeecccccccccc-----cCCC-ccccCCCcceEeeecCCCCCCCCcC---CCCCCCCCeEEEccCcchHHhhccC
Q 002044 870 KLKELKFFCLDEWEEWD-----FGKE-DITIMPQLSSMKISYCSKLNSLPDQ---LLQSTTLEELEIIRCPILEERFKKD 940 (976)
Q Consensus 870 ~L~~L~l~~l~~l~~~~-----~~~~-~~~~l~~L~~L~l~~c~~L~~lp~~---l~~l~~L~~L~l~~c~~l~~~~~~~ 940 (976)
+|+.|++....+..... ..+. ....+|+|+.|.+.+|......+.. ...+++|++|+++.|. +.+.-...
T Consensus 220 ~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~ 298 (362)
T 2ra8_A 220 NLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARL 298 (362)
T ss_dssp TCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHH
T ss_pred CCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHH
Confidence 99999985322211100 0000 0135899999999998743221111 1246899999998873 33211111
Q ss_pred CCCCcccccCCCceeecccccccC
Q 002044 941 TGEDWSKITHIPKIKIHGEYVQGS 964 (976)
Q Consensus 941 ~~~~~~~i~~l~~l~~~~n~~~~~ 964 (976)
.......++++..|++++|.+++.
T Consensus 299 L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 299 LLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp HHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HHhhcccCCcceEEECCCCcCCHH
Confidence 112224578999999999988743
No 198
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.72 E-value=5.3e-05 Score=70.93 Aligned_cols=113 Identities=21% Similarity=0.108 Sum_probs=65.2
Q ss_pred ccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccch-hcccccceeehHHHHHHHhCCCCCcc
Q 002044 175 EVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDV-ISNFEKRMWNCESIIEALEGFAPNLG 253 (976)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~l~~~~~~~~ 253 (976)
+++|+...+.++.+.+..... ...-|.|+|.+|+|||++|+.+++.... ...| + +... ......
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~--v--~~~~-------~~~~~~ 66 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEF--V--YREL-------TPDNAP 66 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCC--E--EEEC-------CTTTSS
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCE--E--EECC-------CCCcch
Confidence 578999999999888764332 1224689999999999999999874211 1122 1 2210 000111
Q ss_pred cHHHHHHHHHHHHcCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCc
Q 002044 254 ELNSLLLRIDAFIARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRK 308 (976)
Q Consensus 254 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 308 (976)
... ..+.. .+.-.|++|++..-.......+...+.......+||.||..
T Consensus 67 ~~~---~~~~~---a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 67 QLN---DFIAL---AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp CHH---HHHHH---HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred hhh---cHHHH---cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 111 11111 24467899999654444445566666554555678888874
No 199
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.70 E-value=0.00016 Score=77.64 Aligned_cols=132 Identities=17% Similarity=0.212 Sum_probs=70.6
Q ss_pred CccccchhHHHHHHHHHhcccc---cCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH------HHHHH
Q 002044 174 SEVRGRVEEKNALKSKLLCKSS---EQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE------SIIEA 244 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~------~~~~~ 244 (976)
..++|.+..++.+...+..... ........+.++|.+|+|||++|+.+++. ....-...+.+.. .....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~~~~~ 94 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKHAVSR 94 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTTHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccccccccHHH
Confidence 3578999998888888764321 01123468999999999999999999873 2111111122221 12222
Q ss_pred HhCCCCCcccHHHHHHHHHHHHc-CCceEEEEcCCCCCCccCcHhHHHhhcCCC-----------CCcEEEEEcCc
Q 002044 245 LEGFAPNLGELNSLLLRIDAFIA-RKKFLLILDDVWTDDYSKWEPFRRCLINGH-----------RESRILVTTRK 308 (976)
Q Consensus 245 l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 308 (976)
+.+.......... ...+...+. ...-+++||++..-.......+...+..+. ....||.||..
T Consensus 95 l~g~~~~~~~~~~-~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~ 169 (311)
T 4fcw_A 95 LIGAPPGYVGYEE-GGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNL 169 (311)
T ss_dssp HHCCCTTSTTTTT-CCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEEST
T ss_pred hcCCCCccccccc-cchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEeccc
Confidence 2222111111000 012223332 345799999996544444455555543321 23447777775
No 200
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.68 E-value=0.00012 Score=90.11 Aligned_cols=152 Identities=19% Similarity=0.245 Sum_probs=82.3
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhccc------c-cceeehHHHHHHHh
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNF------E-KRMWNCESIIEALE 246 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f------~-~~~wv~~~~~~~l~ 246 (976)
..++||+.+++++.+.|... ...-+.++|.+|+||||+|+.+++. +.... . .++++...-+ ..
T Consensus 170 d~viGr~~~i~~l~~~l~~~------~~~~vlL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~~l--~~ 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR------TKNNPVLIGEPGVGKTAIVEGLAQR--IVKGDVPEGLKGKRIVSLQMGSL--LA 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS------SCCCCEEEECTTSCHHHHHHHHHHH--HHHTCSCTTSTTCEEEEECC-------
T ss_pred cccCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHH--HhcCCCchhhcCCeEEEeehHHh--hc
Confidence 46899999999999998743 2334689999999999999999883 32110 1 1223322111 00
Q ss_pred CCCCCcccHHHHHHHHHHHHc--CCceEEEEcCCCCCC--------ccCcHhHHHhhcCCCCCcEEEEEcCchhh-----
Q 002044 247 GFAPNLGELNSLLLRIDAFIA--RKKFLLILDDVWTDD--------YSKWEPFRRCLINGHRESRILVTTRKETV----- 311 (976)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTtR~~~v----- 311 (976)
+ .....+.......+.+.+. +++.+|++|++..-. ......+...+..+ +-.+|.+|.....
T Consensus 240 g-~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~--~i~~I~at~~~~~~~~~~ 316 (854)
T 1qvr_A 240 G-AKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG--ELRLIGATTLDEYREIEK 316 (854)
T ss_dssp -------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTT--CCCEEEEECHHHHHHHTT
T ss_pred c-CccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC--CeEEEEecCchHHhhhcc
Confidence 1 0111223333333434443 367899999995321 11112233333322 2346655554322
Q ss_pred hhc-cCCcceEecCCCCHHHHHHHHHHH
Q 002044 312 ARM-MESTDVIFIKELSEQECWALFKRF 338 (976)
Q Consensus 312 ~~~-~~~~~~~~l~~L~~~~~~~Lf~~~ 338 (976)
... ......+.+++.+.++..+++...
T Consensus 317 d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 317 DPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp CTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred CHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 111 122446899999999999998744
No 201
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.67 E-value=0.00052 Score=77.79 Aligned_cols=184 Identities=11% Similarity=0.083 Sum_probs=101.0
Q ss_pred CccccchhHHHHHHHHHhccccc-------CCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-HHHHHH
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSE-------QTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SIIEAL 245 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~l 245 (976)
.+++|.+..++++.+++...... +....+-|.|+|.+|+|||++|+.+++ .....| +.+.. .+..
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~--~~~~~f---v~vn~~~l~~-- 276 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLINGPEIMS-- 276 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH--HCSSEE---EEEEHHHHHT--
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH--HhCCCE---EEEEchHhhh--
Confidence 46899999999998887542000 012345688999999999999999988 332222 22332 2221
Q ss_pred hCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCCCCCc-----------cCcHhHHHhhcC--CCCCcEEEEEcCchh-h
Q 002044 246 EGFAPNLGELNSLLLRIDAFIARKKFLLILDDVWTDDY-----------SKWEPFRRCLIN--GHRESRILVTTRKET-V 311 (976)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~l~~--~~~gs~iivTtR~~~-v 311 (976)
...+ .........+.....+++.+|+||++..-.. .....+...+.. ...+..||.||.... +
T Consensus 277 --~~~g-~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~L 353 (489)
T 3hu3_A 277 --KLAG-ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (489)
T ss_dssp --SCTT-HHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGB
T ss_pred --hhcc-hhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCcccc
Confidence 1111 1112223334444556788999999921000 111223333332 223456666766442 2
Q ss_pred hhcc----CCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCC-chHHHHH
Q 002044 312 ARMM----ESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGL-PLAAKTI 372 (976)
Q Consensus 312 ~~~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~ 372 (976)
...+ .....+.+...+.++-.+++...+... .......+. ++++.+.|. +-.+..+
T Consensus 354 d~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~-~l~~~~~l~----~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM-KLADDVDLE----QVANETHGHVGADLAAL 414 (489)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTS-CBCTTCCHH----HHHHTCTTCCHHHHHHH
T ss_pred CHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcC-CCcchhhHH----HHHHHccCCcHHHHHHH
Confidence 2221 123478899999999999998876321 111222333 366677764 4344433
No 202
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.00058 Score=75.28 Aligned_cols=180 Identities=15% Similarity=0.163 Sum_probs=93.3
Q ss_pred ccCCccccchhHHHHHHHHHhcccc-------cCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHH
Q 002044 171 IDLSEVRGRVEEKNALKSKLLCKSS-------EQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIE 243 (976)
Q Consensus 171 ~~~~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 243 (976)
..-.++.|.++.+++|.+.+..+-. .+-...+-|.++|++|.|||+||+++++ .....|-. +...
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~--~~~~~~~~---v~~~--- 240 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN--STKAAFIR---VNGS--- 240 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH--HHTCEEEE---EEGG---
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCCeEE---Eecc---
Confidence 3345788999988888877643211 0123456789999999999999999998 34444421 1110
Q ss_pred HHhCCCCCcccHHHHHHHHH-HHHcCCceEEEEcCCCC--------CC--ccC----cHhHHHhhcC--CCCCcEEEEEc
Q 002044 244 ALEGFAPNLGELNSLLLRID-AFIARKKFLLILDDVWT--------DD--YSK----WEPFRRCLIN--GHRESRILVTT 306 (976)
Q Consensus 244 ~l~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~--------~~--~~~----~~~l~~~l~~--~~~gs~iivTt 306 (976)
.+.. ....+....+..+. ..-...++++++|++.. .. ... ...+...+.. ...+..||.||
T Consensus 241 ~l~~--~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aT 318 (428)
T 4b4t_K 241 EFVH--KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMAT 318 (428)
T ss_dssp GTCC--SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEE
T ss_pred hhhc--cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEec
Confidence 0001 11112222333333 33346789999999931 00 001 1122222221 23455677777
Q ss_pred Cchhhhh-cc---CC-cceEecCCCCHHH-HHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCC
Q 002044 307 RKETVAR-MM---ES-TDVIFIKELSEQE-CWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGL 365 (976)
Q Consensus 307 R~~~v~~-~~---~~-~~~~~l~~L~~~~-~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 365 (976)
....... .+ +. ...+.+..++..+ -.++|..+.-. ......-++.. |++.+.|.
T Consensus 319 N~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~-~~l~~~~dl~~----lA~~t~G~ 378 (428)
T 4b4t_K 319 NRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASK-MSLAPEADLDS----LIIRNDSL 378 (428)
T ss_dssp SCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHS-SCBCTTCCHHH----HHHHTTTC
T ss_pred CChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcC-CCCCcccCHHH----HHHHCCCC
Confidence 6543221 11 12 3467786665554 44566554422 22122223443 66677664
No 203
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.00099 Score=72.30 Aligned_cols=180 Identities=14% Similarity=0.109 Sum_probs=99.9
Q ss_pred cCCccccchhHHHHHHHHHhcccc-------cCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHH
Q 002044 172 DLSEVRGRVEEKNALKSKLLCKSS-------EQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEA 244 (976)
Q Consensus 172 ~~~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 244 (976)
.-.++.|.++.+++|.+.+.-+-. .+-...+-|.++|++|.|||.||+++++ .....|-. +... .
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f~~---v~~s---~ 217 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKFIR---VSGA---E 217 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEEEE---EEGG---G
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCceE---EEhH---H
Confidence 345788999988888877653210 0123456789999999999999999998 44444421 1110 0
Q ss_pred HhCCCCCcccHHHHHHHHHH-HHcCCceEEEEcCCCCCC--------ccC------cHhHHHhhcC--CCCCcEEEEEcC
Q 002044 245 LEGFAPNLGELNSLLLRIDA-FIARKKFLLILDDVWTDD--------YSK------WEPFRRCLIN--GHRESRILVTTR 307 (976)
Q Consensus 245 l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~--------~~~------~~~l~~~l~~--~~~gs~iivTtR 307 (976)
+... ...+.+..+..+.. .-...+++|++|++..-- ... ...+...+.. ...+..||.||.
T Consensus 218 l~sk--~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATN 295 (405)
T 4b4t_J 218 LVQK--YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATN 295 (405)
T ss_dssp GSCS--STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEES
T ss_pred hhcc--ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccC
Confidence 1111 11122333333333 334678999999995310 000 1122222322 234456677776
Q ss_pred chhhhh-cc----CCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCc
Q 002044 308 KETVAR-MM----ESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLP 366 (976)
Q Consensus 308 ~~~v~~-~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 366 (976)
..+... .+ .-...+.+..-+.++-.++|+.+.-. ......-++.. |++.+.|.-
T Consensus 296 rpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~-~~l~~dvdl~~----lA~~t~G~S 354 (405)
T 4b4t_J 296 RLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRK-MNLTRGINLRK----VAEKMNGCS 354 (405)
T ss_dssp CSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT-SBCCSSCCHHH----HHHHCCSCC
T ss_pred ChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcC-CCCCccCCHHH----HHHHCCCCC
Confidence 543221 11 23568889888888888899876522 11122223444 777777753
No 204
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.61 E-value=0.00043 Score=78.54 Aligned_cols=147 Identities=17% Similarity=0.174 Sum_probs=79.3
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhccc-----ccceeehHHHHHHHhCC
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNF-----EKRMWNCESIIEALEGF 248 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-----~~~~wv~~~~~~~l~~~ 248 (976)
..++||+.+++.+...+.... ..-+.++|.+|+|||++|+.+++ .+...+ ...-++.++......+.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~--~l~~~~~p~~l~~~~~~~l~~~~~~~g~ 251 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQ--QIINNEVPEILRDKRVMTLDMGTKYRGE 251 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHH--HHHSSCSCTTTSSCCEECC---------
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHH--HHHhCCCChhhcCCeEEEeeCCccccch
Confidence 469999999999999997432 23457999999999999999987 332211 11111111111000000
Q ss_pred CCCcccHHHHHHHHHHHHcCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCchhhhh-------ccCCcceE
Q 002044 249 APNLGELNSLLLRIDAFIARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKETVAR-------MMESTDVI 321 (976)
Q Consensus 249 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~-------~~~~~~~~ 321 (976)
.... ....+...-..++.+|++|.- .+....+...+.. ..-++|.+|....... ......++
T Consensus 252 --~e~~---~~~~~~~~~~~~~~iLfiD~~----~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i 320 (468)
T 3pxg_A 252 --FEDR---LKKVMDEIRQAGNIILFIDAA----IDASNILKPSLAR--GELQCIGATTLDEYRKYIEKDAALERRFQPI 320 (468)
T ss_dssp ---CTT---HHHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTTCSHHHHSEEEE
T ss_pred --HHHH---HHHHHHHHHhcCCeEEEEeCc----hhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhcCHHHHHhCccc
Confidence 0011 122222233357889999921 1222223333322 2346666665443111 11223479
Q ss_pred ecCCCCHHHHHHHHHHHh
Q 002044 322 FIKELSEQECWALFKRFA 339 (976)
Q Consensus 322 ~l~~L~~~~~~~Lf~~~~ 339 (976)
.+++.+.++..+++...+
T Consensus 321 ~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 321 QVDQPSVDESIQILQGLR 338 (468)
T ss_dssp ECCCCCHHHHHHHHHHTT
T ss_pred eeCCCCHHHHHHHHHHHH
Confidence 999999999999998754
No 205
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.59 E-value=0.0025 Score=68.83 Aligned_cols=177 Identities=18% Similarity=0.192 Sum_probs=93.6
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCCCcc
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAPNLG 253 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~~~~ 253 (976)
..++|.+..++.+...+...... ......+.++|++|+||||||+.+++. ....|.. .. +. ...
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~-~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~~---~s--------g~--~~~ 88 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMR-GEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIHV---TS--------GP--VLV 88 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHH-TCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEEE---EE--------TT--TCC
T ss_pred HHccCcHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEEE---Ee--------ch--Hhc
Confidence 46889888777777666432110 123457899999999999999999983 3222210 00 00 000
Q ss_pred cHHHHHHHHHHHHcCCceEEEEcCCCCCCccCcHhHHHhhcCCC--------C----------CcEEE-EEcCchhhhhc
Q 002044 254 ELNSLLLRIDAFIARKKFLLILDDVWTDDYSKWEPFRRCLINGH--------R----------ESRIL-VTTRKETVARM 314 (976)
Q Consensus 254 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~--------~----------gs~ii-vTtR~~~v~~~ 314 (976)
...... .+...+ .++-++++|++..-.....+.+...+.... . ...++ .|++...+...
T Consensus 89 ~~~~l~-~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~ 166 (334)
T 1in4_A 89 KQGDMA-AILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSP 166 (334)
T ss_dssp SHHHHH-HHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHH
T ss_pred CHHHHH-HHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHH
Confidence 111111 111222 245577888884322222233322221111 0 11222 34443332221
Q ss_pred cC--CcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCchHHHHH
Q 002044 315 ME--STDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLPLAAKTI 372 (976)
Q Consensus 315 ~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 372 (976)
+. ....+.+++.+.++-.+++.+.+-...... ..+.+..|+++++|.|-.+..+
T Consensus 167 l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~----~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 167 LRSRFGIILELDFYTVKELKEIIKRAASLMDVEI----EDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp HHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCB----CHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHhcCCChHHHHHH
Confidence 11 123588999999999999988763222111 1345677999999999654433
No 206
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.58 E-value=0.0022 Score=71.18 Aligned_cols=305 Identities=14% Similarity=0.069 Sum_probs=144.0
Q ss_pred ccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccC-ccccCCCccceecC-cccccc
Q 002044 545 VSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIP-KGIKKLRHLRYLKL-YLVEKL 622 (976)
Q Consensus 545 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp-~~i~~L~~Lr~L~L-~~~~~l 622 (976)
.++..+.+|+++.+..+ +.... ...|.+|.+|+.+++.. .+..++ ..+.++..|+.+.+ ..+..+
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~-----~~aF~~c~~L~~i~lp~-------~l~~I~~~aF~~c~~L~~i~~p~~l~~i 131 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIG-----EFAFENCSKLEIINIPD-------SVKMIGRCTFSGCYALKSILLPLMLKSI 131 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEEC-----TTTTTTCTTCCEECCCT-------TCCEECTTTTTTCTTCCCCCCCTTCCEE
T ss_pred HHhhCCCCceEEEeCCC-ccCcc-----hhHhhCCCCCcEEEeCC-------CceEccchhhcccccchhhcccCceeee
Confidence 35567888888888643 22111 12278888999988862 133343 34666777777766 455555
Q ss_pred Cc-cccccCCccEEecCCCCCCcccc-hhhcccCCCcEEEecccccccCcc-cccCCCCCCcCCceEEecCCCCCCCccc
Q 002044 623 PE-TCCELLNLQTLNMCGSPGLKRLP-QGIGKLINLRHLMFEVDYLEYMPK-GIERLTSLRTLSEFVVVNGSGKYGSKAC 699 (976)
Q Consensus 623 p~-~i~~L~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~ 699 (976)
+. .+.....++...... +..+. ..+..+++|+.+.+..+ +..++. .+..+++|+.+.+-.. ..........
T Consensus 132 ~~~aF~~~~~~~~~~~~~---~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~ 205 (394)
T 4fs7_A 132 GVEAFKGCDFKEITIPEG---VTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFA 205 (394)
T ss_dssp CTTTTTTCCCSEEECCTT---CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTT
T ss_pred cceeeecccccccccCcc---ccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhc
Confidence 43 333333333332222 22222 33667788888877433 233332 3555666666542110 0000000111
Q ss_pred ccccccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhHHHHhhcCCCCCCCceEE
Q 002044 700 NLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANHEAVCEALQPPPNLESLQ 779 (976)
Q Consensus 700 ~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 779 (976)
.+..|..+..-. . +.... ........|+.+.+...... . ....+..+.+|+.+.
T Consensus 206 ~~~~L~~i~~~~-~--------~~~i~----~~~~~~~~l~~i~ip~~~~~-i------------~~~~f~~~~~l~~~~ 259 (394)
T 4fs7_A 206 ECILLENMEFPN-S--------LYYLG----DFALSKTGVKNIIIPDSFTE-L------------GKSVFYGCTDLESIS 259 (394)
T ss_dssp TCTTCCBCCCCT-T--------CCEEC----TTTTTTCCCCEEEECTTCCE-E------------CSSTTTTCSSCCEEE
T ss_pred cccccceeecCC-C--------ceEee----hhhcccCCCceEEECCCcee-c------------ccccccccccceeEE
Confidence 222222221000 0 00000 01122345555555321100 0 001233455666666
Q ss_pred EeecCCCCCCcccccccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceEeCccccCCCcCcccccccCCCCCC
Q 002044 780 ITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMPALGILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIHIQDGSMSSS 859 (976)
Q Consensus 780 L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~ 859 (976)
+..+.. .+....+..+..|+.+........ -..+..+.+|+.+.+.. .++.++...+.
T Consensus 260 ~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~--~i~~I~~~aF~----------------- 317 (394)
T 4fs7_A 260 IQNNKL-RIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLD--SVKFIGEEAFE----------------- 317 (394)
T ss_dssp ECCTTC-EECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECT--TCCEECTTTTT-----------------
T ss_pred cCCCcc-eeeccccccccccceeccCceeec--ccccccccccccccccc--ccceechhhhc-----------------
Confidence 654422 221333445566666655443210 01244566677776643 25555543221
Q ss_pred CCCccCccCCccceeeecccccccccccCCCccccCCCcceEeeecCCCCCCCC-cCCCCCCCCCeEEEcc
Q 002044 860 SSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNSLP-DQLLQSTTLEELEIIR 929 (976)
Q Consensus 860 ~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp-~~l~~l~~L~~L~l~~ 929 (976)
.+.+|+.+.+.+ +++. ++...+..+.+|+.++|... ++.++ ..+.++++|+.+.+..
T Consensus 318 -------~c~~L~~i~lp~--~v~~--I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 318 -------SCTSLVSIDLPY--LVEE--IGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp -------TCTTCCEECCCT--TCCE--ECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred -------CCCCCCEEEeCC--cccE--EhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence 244566655532 2222 23344566778888877643 66665 3466778888888754
No 207
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.0013 Score=72.75 Aligned_cols=180 Identities=15% Similarity=0.144 Sum_probs=99.4
Q ss_pred cCCccccchhHHHHHHHHHhcccc-------cCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHH
Q 002044 172 DLSEVRGRVEEKNALKSKLLCKSS-------EQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEA 244 (976)
Q Consensus 172 ~~~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 244 (976)
.-.++.|.++.+++|.+.+.-+-. .+-...+-|.++|++|.|||+||+++++ .....|-. +.. ..
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~~~~---v~~---s~ 250 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGANFIF---SPA---SG 250 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEEEE---EEG---GG
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCEEE---Eeh---hh
Confidence 345788999888888777643211 0123457889999999999999999998 34434321 111 00
Q ss_pred HhCCCCCcccHHHHHHHHHH-HHcCCceEEEEcCCCCC------CccC--------cHhHHHhhcC--CCCCcEEEEEcC
Q 002044 245 LEGFAPNLGELNSLLLRIDA-FIARKKFLLILDDVWTD------DYSK--------WEPFRRCLIN--GHRESRILVTTR 307 (976)
Q Consensus 245 l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~------~~~~--------~~~l~~~l~~--~~~gs~iivTtR 307 (976)
+.. ....+.......+.. .-...+++|++|++..- .... +..+...+.. ...+..||.||.
T Consensus 251 l~s--k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATN 328 (437)
T 4b4t_L 251 IVD--KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATN 328 (437)
T ss_dssp TCC--SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEES
T ss_pred hcc--ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecC
Confidence 111 111122233333333 33467899999999531 0000 1123333322 234556777887
Q ss_pred chhhhh-cc-C---CcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCc
Q 002044 308 KETVAR-MM-E---STDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLP 366 (976)
Q Consensus 308 ~~~v~~-~~-~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 366 (976)
...... .+ . -...+.+..-+.++-.++|+.+...-. ....-++. .|++.+.|.-
T Consensus 329 rp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-~~~d~dl~----~lA~~t~G~s 387 (437)
T 4b4t_L 329 RPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVK-KTGEFDFE----AAVKMSDGFN 387 (437)
T ss_dssp STTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSC-BCSCCCHH----HHHHTCCSCC
T ss_pred CchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCC-CCcccCHH----HHHHhCCCCC
Confidence 544322 11 1 245788888888888888876653221 12222343 3777777753
No 208
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.54 E-value=2e-05 Score=75.16 Aligned_cols=63 Identities=19% Similarity=0.204 Sum_probs=33.9
Q ss_pred CCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCC--CCCCCCC----CCcceeeccccccceE
Q 002044 773 PNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEV--MPALGIL----PSLEVLKIRFMKSVKR 835 (976)
Q Consensus 773 ~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~--l~~l~~L----~~L~~L~L~~~~~l~~ 835 (976)
.+|+.|++++|.++...-..+..+++|+.|+|++|..+++ +..+..+ ++|++|+|++|..++.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 3566666666654332222334566666666666665543 2223332 3567777776665543
No 209
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.53 E-value=4.3e-05 Score=74.91 Aligned_cols=119 Identities=13% Similarity=0.092 Sum_probs=75.9
Q ss_pred cccccCceeEEEecCc-ccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecC--ccccc-
Q 002044 546 SIFYARKLRSLMLSYN-TLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVEK- 621 (976)
Q Consensus 546 ~~~~~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~~- 621 (976)
.+...+.|++|++++| .+....... +...+...++|++|+|++|. +...+...+...+....+|++|+| +.+..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~-l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKA-CAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHH-HHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHH-HHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 3456788899999888 765543333 44457778889999998542 112222234555666677888888 33332
Q ss_pred ----cCccccccCCccEEec--CCCCCCcc-----cchhhcccCCCcEEEecccccc
Q 002044 622 ----LPETCCELLNLQTLNM--CGSPGLKR-----LPQGIGKLINLRHLMFEVDYLE 667 (976)
Q Consensus 622 ----lp~~i~~L~~L~~L~l--~~~~~l~~-----lp~~i~~l~~L~~L~l~~~~l~ 667 (976)
+...+....+|++|+| ++|. +.. +...+...++|++|+++.|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4556666778888888 6665 542 3445566678888888776654
No 210
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.49 E-value=5.9e-05 Score=70.40 Aligned_cols=109 Identities=8% Similarity=0.060 Sum_probs=62.2
Q ss_pred ccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-HHHHHHhCCCCCcc
Q 002044 175 EVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SIIEALEGFAPNLG 253 (976)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~l~~~~~~~~ 253 (976)
+++|+...++++.+.+..... ...-|.|+|.+|+|||++|+.+++... ..+.+++ .+....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~~~~~~-------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVEYLIDM-------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTTHHHHC--------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhhCChHh--------
Confidence 578999998888888764322 122377999999999999999988422 2222222 111110
Q ss_pred cHHHHHHHHHHHHcCCceEEEEcCCCCCCccCcHhHHHhhcCC-CCCcEEEEEcCc
Q 002044 254 ELNSLLLRIDAFIARKKFLLILDDVWTDDYSKWEPFRRCLING-HRESRILVTTRK 308 (976)
Q Consensus 254 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtR~ 308 (976)
...+.+. .+.-.|++|++..-.......+...+... ..+.+||.||..
T Consensus 67 -----~~~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 -----PMELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp -----HHHHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred -----hhhHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 1111121 23468899999654433344455444432 345678888764
No 211
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.0019 Score=71.08 Aligned_cols=179 Identities=15% Similarity=0.099 Sum_probs=97.8
Q ss_pred CCccccchhHHHHHHHHHhccc-------ccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHH
Q 002044 173 LSEVRGRVEEKNALKSKLLCKS-------SEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEAL 245 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~-------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l 245 (976)
-.++.|.++.+++|.+.+.-+- ..+-...+-|.++|++|.|||+||+++++ .....|-. +.. ..+
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~fi~---vs~---s~L 279 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATFIR---VIG---SEL 279 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEEEE---EEG---GGG
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCeEE---EEh---HHh
Confidence 3578899998888877653211 00123567789999999999999999998 44444421 111 001
Q ss_pred hCCCCCcccHHHHHHHHH-HHHcCCceEEEEcCCCCCC------ccC--------cHhHHHhhcC--CCCCcEEEEEcCc
Q 002044 246 EGFAPNLGELNSLLLRID-AFIARKKFLLILDDVWTDD------YSK--------WEPFRRCLIN--GHRESRILVTTRK 308 (976)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~------~~~--------~~~l~~~l~~--~~~gs~iivTtR~ 308 (976)
... ...+.+.....+. ..-...+++|++|++..-- ... ...+...+.. ...+..||.||..
T Consensus 280 ~sk--~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNr 357 (467)
T 4b4t_H 280 VQK--YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNR 357 (467)
T ss_dssp CCC--SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSC
T ss_pred hcc--cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCC
Confidence 111 1112223333333 3334678999999995310 000 1112222222 2234456667764
Q ss_pred hhhhh-cc----CCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCc
Q 002044 309 ETVAR-MM----ESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLP 366 (976)
Q Consensus 309 ~~v~~-~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 366 (976)
..... .+ .-...+.+..-+.++-.++|+.++-. ......-.+. .|++.+.|.-
T Consensus 358 pd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~-~~l~~dvdl~----~LA~~T~GfS 415 (467)
T 4b4t_H 358 PNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKS-MSVERGIRWE----LISRLCPNST 415 (467)
T ss_dssp TTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTT-SCBCSSCCHH----HHHHHCCSCC
T ss_pred cccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcC-CCCCCCCCHH----HHHHHCCCCC
Confidence 33221 11 22567888888888888899876532 1112222343 3777787753
No 212
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.00082 Score=74.14 Aligned_cols=179 Identities=17% Similarity=0.116 Sum_probs=97.1
Q ss_pred cCCccccchhHHHHHHHHHhcccc-------cCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHH
Q 002044 172 DLSEVRGRVEEKNALKSKLLCKSS-------EQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEA 244 (976)
Q Consensus 172 ~~~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 244 (976)
.-.++.|.++.+++|.+.+..+-. .+-...+-|.++|++|.|||.||+++++ .....|-. +.. ..
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~~f~~---v~~---s~ 250 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QTNATFLK---LAA---PQ 250 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEEEE---EEG---GG
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCCCEEE---Eeh---hh
Confidence 345789999999888876543211 0123467889999999999999999998 34444321 111 00
Q ss_pred HhCCCCCcccHHHHHHHHHH-HHcCCceEEEEcCCCC------C-Ccc---C----cHhHHHhhcCC--CCCcEEEEEcC
Q 002044 245 LEGFAPNLGELNSLLLRIDA-FIARKKFLLILDDVWT------D-DYS---K----WEPFRRCLING--HRESRILVTTR 307 (976)
Q Consensus 245 l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~------~-~~~---~----~~~l~~~l~~~--~~gs~iivTtR 307 (976)
+... ...+.......+.. .-...+++|++|++.. . ... . ...+...+... ..+-.||.||.
T Consensus 251 l~~~--~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTN 328 (434)
T 4b4t_M 251 LVQM--YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATN 328 (434)
T ss_dssp GCSS--CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECS
T ss_pred hhhc--ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCC
Confidence 1111 11122333333333 2345789999999832 0 000 0 11222233221 23445666776
Q ss_pred chhhhh-cc----CCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCC
Q 002044 308 KETVAR-MM----ESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGL 365 (976)
Q Consensus 308 ~~~v~~-~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 365 (976)
...... .+ .-...+.+..-+.++-.++|+.+.-.-. ....-++.. |++.+.|.
T Consensus 329 rp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-~~~dvdl~~----lA~~t~G~ 386 (434)
T 4b4t_M 329 RVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMT-TDDDINWQE----LARSTDEF 386 (434)
T ss_dssp SCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSC-BCSCCCHHH----HHHHCSSC
T ss_pred CchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCC-CCCcCCHHH----HHHhCCCC
Confidence 543322 11 1245788888888888888876652211 112223333 67777764
No 213
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.38 E-value=0.00022 Score=74.47 Aligned_cols=47 Identities=13% Similarity=0.110 Sum_probs=33.7
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcc
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
..++|....+.++.+.+..... ....|.|+|.+|+|||++|+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 4588999998888877654322 1235779999999999999999874
No 214
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.38 E-value=0.00093 Score=70.76 Aligned_cols=145 Identities=13% Similarity=0.027 Sum_probs=89.1
Q ss_pred cchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccc-hhcccccceeehHHHHHHHhCCCCCcccHH
Q 002044 178 GRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDED-VISNFEKRMWNCESIIEALEGFAPNLGELN 256 (976)
Q Consensus 178 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~l~~~~~~~~~~~ 256 (976)
|-++.++.+...+.. +..+...++|++|+||||+|+.+++... ....+....++.. .......+
T Consensus 1 g~~~~~~~L~~~i~~------~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~---------~~~~~~id 65 (305)
T 2gno_A 1 GAKDQLETLKRIIEK------SEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDP---------EGENIGID 65 (305)
T ss_dssp ---CHHHHHHHHHHT------CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECC---------SSSCBCHH
T ss_pred ChHHHHHHHHHHHHC------CCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcC---------CcCCCCHH
Confidence 344556667776653 2367889999999999999999987310 1111112232211 01122333
Q ss_pred HHHHHHHHHHc-----CCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCch-hhhhccCCcceEecCCCCHHH
Q 002044 257 SLLLRIDAFIA-----RKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKE-TVARMMESTDVIFIKELSEQE 330 (976)
Q Consensus 257 ~~~~~l~~~l~-----~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~l~~L~~~~ 330 (976)
+... +.+... +++-++|+|++..-.....+.+...+....+.+.+|++|.+. .+...+... ++++.++++++
T Consensus 66 ~ir~-li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~ 143 (305)
T 2gno_A 66 DIRT-IKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKE 143 (305)
T ss_dssp HHHH-HHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHH
T ss_pred HHHH-HHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHH
Confidence 3222 333332 346699999996555556677777777666677877776543 344444334 99999999999
Q ss_pred HHHHHHHHh
Q 002044 331 CWALFKRFA 339 (976)
Q Consensus 331 ~~~Lf~~~~ 339 (976)
..+.+.+.+
T Consensus 144 i~~~L~~~~ 152 (305)
T 2gno_A 144 FRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998765
No 215
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.35 E-value=0.00056 Score=83.13 Aligned_cols=156 Identities=17% Similarity=0.161 Sum_probs=87.1
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcc------cccceeehHHHHHHHhC
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISN------FEKRMWNCESIIEALEG 247 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------f~~~~wv~~~~~~~l~~ 247 (976)
..++||+.+++++.+.|... ...-+.|+|.+|+||||+|+.+++. +... ....+|.. +....+.+
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~--l~~~~v~~~~~~~~~~~~-~~~~l~~~ 256 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWR--IVQGDVPEVMADCTIYSL-DIGSLLAG 256 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHH--HHHTCSCGGGTTCEEEEC-CCC---CC
T ss_pred CCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHH--HHhCCCChhhcCCEEEEE-cHHHHhcc
Confidence 46899999999999998743 2334689999999999999999873 2111 12222211 00000111
Q ss_pred CCCCcccHHHHHHHHHHHHc-CCceEEEEcCCCCCCc-----cCcHhHHHhhcC--CCCCcEEEEEcCchhhhhc-----
Q 002044 248 FAPNLGELNSLLLRIDAFIA-RKKFLLILDDVWTDDY-----SKWEPFRRCLIN--GHRESRILVTTRKETVARM----- 314 (976)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~-----~~~~~l~~~l~~--~~~gs~iivTtR~~~v~~~----- 314 (976)
.............+.+.+. .++.+|++|++..-.. ..-......+.. ...+.++|.+|........
T Consensus 257 -~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~~~~d~ 335 (758)
T 1r6b_X 257 -TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDR 335 (758)
T ss_dssp -CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTT
T ss_pred -ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHHhhhhhcCH
Confidence 1122334444444555544 4578999999953200 001111112211 1233566666664432111
Q ss_pred --cCCcceEecCCCCHHHHHHHHHHHh
Q 002044 315 --MESTDVIFIKELSEQECWALFKRFA 339 (976)
Q Consensus 315 --~~~~~~~~l~~L~~~~~~~Lf~~~~ 339 (976)
......+.+.+.+.++..+++....
T Consensus 336 aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 336 ALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp SSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 1223468899999999988887644
No 216
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.33 E-value=0.0042 Score=68.93 Aligned_cols=316 Identities=12% Similarity=0.110 Sum_probs=167.6
Q ss_pred CceeEEEEEccCCCCC-cccccccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccC-ccc
Q 002044 528 EKLRHLMLVLGYKNSF-PVSIFYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIP-KGI 605 (976)
Q Consensus 528 ~~~r~l~~~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp-~~i 605 (976)
.+++.+.+... ...+ ..++.++.+|+++.+..+- .... ...|.++.+|+.+.+.. .+..+. ..+
T Consensus 71 ~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~l-~~I~-----~~aF~~c~~L~~i~~p~-------~l~~i~~~aF 136 (394)
T 4fs7_A 71 RKVTEIKIPST-VREIGEFAFENCSKLEIINIPDSV-KMIG-----RCTFSGCYALKSILLPL-------MLKSIGVEAF 136 (394)
T ss_dssp TTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTTC-CEEC-----TTTTTTCTTCCCCCCCT-------TCCEECTTTT
T ss_pred CCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCCc-eEcc-----chhhcccccchhhcccC-------ceeeecceee
Confidence 45666665422 2222 2456788999999986542 1111 12278888888877652 122222 234
Q ss_pred cCCCccceecCccccccC-ccccccCCccEEecCCCCCCcccchh-hcccCCCcEEEecccccccCc-ccccCCCCCCcC
Q 002044 606 KKLRHLRYLKLYLVEKLP-ETCCELLNLQTLNMCGSPGLKRLPQG-IGKLINLRHLMFEVDYLEYMP-KGIERLTSLRTL 682 (976)
Q Consensus 606 ~~L~~Lr~L~L~~~~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L 682 (976)
.++..+.......+..+. ..+.++.+|+.+.+..+ +..++.. +..+.+|+.+.+..+ +..++ ..+.+.+.|+.+
T Consensus 137 ~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 137 KGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM 213 (394)
T ss_dssp TTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred ecccccccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence 444433333334444444 35777888999988754 4555543 667888888887443 44443 335566666665
Q ss_pred CceEEecCCCCCCCcccccccccccccCCCceEEcCcCCCCChhhHHhccCCCCCCCceEEEEecCCCCCCCCccchhhH
Q 002044 683 SEFVVVNGSGKYGSKACNLEGLRYLNHLRGSLKIRGLGNVTDIDEAKSAHLDKKKNLVVLILRFNKEAPVGMKDENEANH 762 (976)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 762 (976)
..... .............++ ++.+.. .+..+ ....+..+..|+.+.+..+...
T Consensus 214 ~~~~~---~~~i~~~~~~~~~l~-------~i~ip~--~~~~i---~~~~f~~~~~l~~~~~~~~~~~------------ 266 (394)
T 4fs7_A 214 EFPNS---LYYLGDFALSKTGVK-------NIIIPD--SFTEL---GKSVFYGCTDLESISIQNNKLR------------ 266 (394)
T ss_dssp CCCTT---CCEECTTTTTTCCCC-------EEEECT--TCCEE---CSSTTTTCSSCCEEEECCTTCE------------
T ss_pred ecCCC---ceEeehhhcccCCCc-------eEEECC--Cceec---ccccccccccceeEEcCCCcce------------
Confidence 42110 000000011111222 222211 11111 1123456677888777543211
Q ss_pred HHHhhcCCCCCCCceEEEeecCCCCCCcccccccccccEEEEeCCCCCCCCC--CCCCCCCcceeeccccccceEeCccc
Q 002044 763 EAVCEALQPPPNLESLQITGFKGRTLMLSWIVSLNKLKKLRLLFCDKCEVMP--ALGILPSLEVLKIRFMKSVKRVGNEF 840 (976)
Q Consensus 763 ~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~--~l~~L~~L~~L~L~~~~~l~~~~~~~ 840 (976)
-....+..+..++.+...... .....+..+.+|+.+.+.++ ++.++ .+..+.+|+.+.|.. .++.++...
T Consensus 267 -i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~a 338 (394)
T 4fs7_A 267 -IGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRS 338 (394)
T ss_dssp -ECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT--TCCEECTTT
T ss_pred -eeccccccccccceeccCcee---eccccccccccccccccccc--cceechhhhcCCCCCCEEEeCC--cccEEhHHh
Confidence 001123455677777665432 21233457789999988664 34443 366788999998853 366676533
Q ss_pred cCCCcCcccccccCCCCCCCCCccCccCCccceeeecccccccccccCCCccccCCCcceEeeecCCCCCCCCcCCCCCC
Q 002044 841 LGTEISDHIHIQDGSMSSSSSSSANIAFPKLKELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNSLPDQLLQST 920 (976)
Q Consensus 841 ~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~ 920 (976)
+. .+.+|+.+.+.. ++.. ++...+..+++|+.++|... ++.+...+.+++
T Consensus 339 F~------------------------~c~~L~~i~lp~--~l~~--I~~~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~ 388 (394)
T 4fs7_A 339 FR------------------------GCTSLSNINFPL--SLRK--IGANAFQGCINLKKVELPKR--LEQYRYDFEDTT 388 (394)
T ss_dssp TT------------------------TCTTCCEECCCT--TCCE--ECTTTBTTCTTCCEEEEEGG--GGGGGGGBCTTC
T ss_pred cc------------------------CCCCCCEEEECc--cccE--ehHHHhhCCCCCCEEEECCC--CEEhhheecCCC
Confidence 21 245566666532 2222 33445678889999988753 455555566667
Q ss_pred CCCeE
Q 002044 921 TLEEL 925 (976)
Q Consensus 921 ~L~~L 925 (976)
+|+.+
T Consensus 389 ~L~~I 393 (394)
T 4fs7_A 389 KFKWI 393 (394)
T ss_dssp EEEEE
T ss_pred CCcEE
Confidence 76654
No 217
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.003 Score=68.78 Aligned_cols=179 Identities=17% Similarity=0.155 Sum_probs=97.4
Q ss_pred cCCccccchhHHHHHHHHHhcccc-------cCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHH
Q 002044 172 DLSEVRGRVEEKNALKSKLLCKSS-------EQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEA 244 (976)
Q Consensus 172 ~~~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 244 (976)
.-.++-|.++.+++|.+.+..+-. .+-...+-|.++|++|.|||.||+++++ .....|-.+- . ..
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~fi~v~---~---s~ 251 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN--QTSATFLRIV---G---SE 251 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH--HHTCEEEEEE---S---GG
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH--HhCCCEEEEE---H---HH
Confidence 345688999888888776643210 0123457789999999999999999998 3444442111 1 00
Q ss_pred HhCCCCCcccHHHHHHHHHHH-HcCCceEEEEcCCCCCC------cc----C----cHhHHHhhc--CCCCCcEEEEEcC
Q 002044 245 LEGFAPNLGELNSLLLRIDAF-IARKKFLLILDDVWTDD------YS----K----WEPFRRCLI--NGHRESRILVTTR 307 (976)
Q Consensus 245 l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~------~~----~----~~~l~~~l~--~~~~gs~iivTtR 307 (976)
+.. ....+.+.....+... -...+++|++|++..-- .. . ...+...+. ....+..||.||.
T Consensus 252 l~s--k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATN 329 (437)
T 4b4t_I 252 LIQ--KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATN 329 (437)
T ss_dssp GCC--SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEES
T ss_pred hhh--ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCC
Confidence 111 1112233333333333 34578999999985310 00 0 111222222 1234456777776
Q ss_pred chhhhh-cc-C--C-cceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCC
Q 002044 308 KETVAR-MM-E--S-TDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGL 365 (976)
Q Consensus 308 ~~~v~~-~~-~--~-~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 365 (976)
...... .+ . . ...+.+..-+.++-.++|..+.-. ......-++.. |++.+.|.
T Consensus 330 rpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~-~~l~~dvdl~~----LA~~T~Gf 387 (437)
T 4b4t_I 330 KIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSK-MNLSEDVNLET----LVTTKDDL 387 (437)
T ss_dssp CSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTT-SCBCSCCCHHH----HHHHCCSC
T ss_pred ChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcC-CCCCCcCCHHH----HHHhCCCC
Confidence 544332 11 1 1 346778877888888888776522 21122223444 66777664
No 218
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.30 E-value=0.004 Score=64.43 Aligned_cols=158 Identities=12% Similarity=0.071 Sum_probs=81.0
Q ss_pred CCccccchhHHHHHHHHHh---ccccc---CCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHh
Q 002044 173 LSEVRGRVEEKNALKSKLL---CKSSE---QTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALE 246 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~---~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~ 246 (976)
-.+++|.+..++++.+.+. .+..- +....+-|.|+|.+|+||||+|+.+++. ....| +.+... .+.
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~i~~~---~~~ 82 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGS---DFV 82 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCCE---EEECSC---SST
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCCE---EEEeHH---HHH
Confidence 4578999887777665542 21100 0112335889999999999999999873 22222 222210 000
Q ss_pred CCCCCcccHHHHHHHHHHHHcCCceEEEEcCCCCCC---c-----------cCcHhHHHhhcC--CCCCcEEEEEcCchh
Q 002044 247 GFAPNLGELNSLLLRIDAFIARKKFLLILDDVWTDD---Y-----------SKWEPFRRCLIN--GHRESRILVTTRKET 310 (976)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~-----------~~~~~l~~~l~~--~~~gs~iivTtR~~~ 310 (976)
..... .........+.......+.++++|++..-. . .....+...+.. ...+..||.||....
T Consensus 83 ~~~~~-~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~ 161 (257)
T 1lv7_A 83 EMFVG-VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPD 161 (257)
T ss_dssp TSCCC-CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTT
T ss_pred HHhhh-hhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCch
Confidence 00001 111222233333334567899999982110 0 011122222221 233456777776543
Q ss_pred -hhhcc-C---CcceEecCCCCHHHHHHHHHHHh
Q 002044 311 -VARMM-E---STDVIFIKELSEQECWALFKRFA 339 (976)
Q Consensus 311 -v~~~~-~---~~~~~~l~~L~~~~~~~Lf~~~~ 339 (976)
+.... . ....+.+...+.++-.+++...+
T Consensus 162 ~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 162 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 22211 1 13467788888888888887665
No 219
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.29 E-value=0.00033 Score=74.55 Aligned_cols=46 Identities=17% Similarity=0.197 Sum_probs=36.2
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhc
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..++|+...+.++.+.+..... ....|.|+|.+|+|||++|+.+++
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHH
Confidence 4689999999998888765332 223467999999999999999987
No 220
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.25 E-value=0.0011 Score=70.84 Aligned_cols=50 Identities=22% Similarity=0.315 Sum_probs=36.9
Q ss_pred CccccchhHHHHHHHHHhccccc--------CCCCeEEEEEEecCCchHHHHHHHHhc
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSE--------QTNAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~--------~~~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..++|.+..++.+...+...-.. .......+.++|.+|+|||++|+.+++
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999998877541000 001234678999999999999999987
No 221
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.23 E-value=0.0019 Score=78.25 Aligned_cols=146 Identities=18% Similarity=0.201 Sum_probs=80.3
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcc-----cccceeehHHHHHHHhCC
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISN-----FEKRMWNCESIIEALEGF 248 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~~~~~~l~~~ 248 (976)
..++||+.+++++...|.... ..-+.++|.+|+|||++|+.+++. +... ....-++.++. ...
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~--l~~~~~p~~l~~~~~~~~~~----g~~ 247 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDM----GTK 247 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC---------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHH--HhcCCCChhhcCCeEEEecc----ccc
Confidence 469999999999999997532 223679999999999999999873 2111 01111121121 000
Q ss_pred CCCcccHH-HHHHHHHHHHcCCceEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCchhhhh------c-cCCcce
Q 002044 249 APNLGELN-SLLLRIDAFIARKKFLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKETVAR------M-MESTDV 320 (976)
Q Consensus 249 ~~~~~~~~-~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~------~-~~~~~~ 320 (976)
.. .+.+ .+...+......++.+|++|.- . +....+...+. ....++|.||....... . .....+
T Consensus 248 ~~--G~~e~~l~~~~~~~~~~~~~iLfiD~~--~--~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~~ 319 (758)
T 3pxi_A 248 YR--GEFEDRLKKVMDEIRQAGNIILFIDAA--I--DASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQP 319 (758)
T ss_dssp -------CTTHHHHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEE
T ss_pred cc--chHHHHHHHHHHHHHhcCCEEEEEcCc--h--hHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhCcE
Confidence 00 0111 1222233333467899999922 1 12222333332 22356777766544211 1 122357
Q ss_pred EecCCCCHHHHHHHHHHHh
Q 002044 321 IFIKELSEQECWALFKRFA 339 (976)
Q Consensus 321 ~~l~~L~~~~~~~Lf~~~~ 339 (976)
+.++..+.++..+++....
T Consensus 320 i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 320 IQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp EECCCCCHHHHHHHHHHTT
T ss_pred EEeCCCCHHHHHHHHHHHH
Confidence 9999999999999998654
No 222
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.21 E-value=0.00029 Score=75.09 Aligned_cols=118 Identities=18% Similarity=0.099 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchh-cccccceeehH-HHHHHHhCCCCCcccHHH
Q 002044 180 VEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVI-SNFEKRMWNCE-SIIEALEGFAPNLGELNS 257 (976)
Q Consensus 180 ~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~-~~~~~l~~~~~~~~~~~~ 257 (976)
...++.+.+++..... ...+.+.|+|.+|+|||+||..+++. .. ..-..+.++.+ .++..+....... ...
T Consensus 134 ~~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~--~~~~~g~~v~~~~~~~l~~~l~~~~~~~-~~~- 206 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHE--LSEKKGVSTTLLHFPSFAIDVKNAISNG-SVK- 206 (308)
T ss_dssp HHHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHH--HHHHSCCCEEEEEHHHHHHHHHCCCC-----C-
T ss_pred HHHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEHHHHHHHHHHHhccc-hHH-
Confidence 3444555566653321 12457889999999999999999983 33 22223445554 4555554322111 111
Q ss_pred HHHHHHHHHcCCceEEEEcCCCCCCccCcH--hHHH-hhcCC-CCCcEEEEEcCc
Q 002044 258 LLLRIDAFIARKKFLLILDDVWTDDYSKWE--PFRR-CLING-HRESRILVTTRK 308 (976)
Q Consensus 258 ~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~--~l~~-~l~~~-~~gs~iivTtR~ 308 (976)
.+...+.+ .-+|||||+.......|. .+.. .+... ..+..+|+||..
T Consensus 207 ---~~~~~~~~-~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~ 257 (308)
T 2qgz_A 207 ---EEIDAVKN-VPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNY 257 (308)
T ss_dssp ---CTTHHHHT-SSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESS
T ss_pred ---HHHHHhcC-CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 11122222 348999999543322332 1222 22111 123468888874
No 223
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.15 E-value=0.00071 Score=82.11 Aligned_cols=155 Identities=15% Similarity=0.197 Sum_probs=85.9
Q ss_pred CccccchhHHHHHHHHHhccccc---CCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCC
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSE---QTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAP 250 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~ 250 (976)
..++|.+..++.+...+...... .......+.++|.+|+|||++|+.+++. ....-...+.++.. .+.....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s---~~~~~~~ 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMS---EYMEKHS 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGG---GGCSSCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEech---hcccccc
Confidence 46899999998888887643211 1223447899999999999999999873 21111112222220 0111000
Q ss_pred CcccHHHHHHHHHHHHc-CCceEEEEcCCCCCCccCcHhHHHhhcCC-----------CCCcEEEEEcCch-----hh--
Q 002044 251 NLGELNSLLLRIDAFIA-RKKFLLILDDVWTDDYSKWEPFRRCLING-----------HRESRILVTTRKE-----TV-- 311 (976)
Q Consensus 251 ~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtR~~-----~v-- 311 (976)
. . ...+...++ ...-+|+||++..........+...+..+ ....+||+||... .+
T Consensus 566 ~--~----~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~ 639 (758)
T 3pxi_A 566 T--S----GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMG 639 (758)
T ss_dssp C--C-------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHH
T ss_pred c--c----cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHH
Confidence 0 0 111122222 33459999999655555555555555432 1346888998731 11
Q ss_pred --hhcc-----CC-cceEecCCCCHHHHHHHHHHHh
Q 002044 312 --ARMM-----ES-TDVIFIKELSEQECWALFKRFA 339 (976)
Q Consensus 312 --~~~~-----~~-~~~~~l~~L~~~~~~~Lf~~~~ 339 (976)
...+ .. ..++.+.+++.++-.+++...+
T Consensus 640 ~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 640 ELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp HHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred HHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 1111 11 2578899999988888876654
No 224
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.15 E-value=0.00044 Score=72.37 Aligned_cols=157 Identities=14% Similarity=0.139 Sum_probs=79.9
Q ss_pred CCccccchhHHHHHHHHHhccccc------CCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-HHHHHH
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSSE------QTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SIIEAL 245 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~l 245 (976)
..+++|.+..++.+.+.+..-... +....+-|.|+|.+|+|||++|+.+++. ....|-. +.. .+....
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~~~---v~~~~~~~~~ 84 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AHVPFFS---MGGSSFIEMF 84 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH--HTCCCCC---CCSCTTTTSC
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCEEE---echHHHHHhh
Confidence 357899988877777665410000 0111233789999999999999999983 3222211 111 111001
Q ss_pred hCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCCCCCc---------------cCcHhHHHhhcCC---CCCcEEEEEcC
Q 002044 246 EGFAPNLGELNSLLLRIDAFIARKKFLLILDDVWTDDY---------------SKWEPFRRCLING---HRESRILVTTR 307 (976)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---------------~~~~~l~~~l~~~---~~gs~iivTtR 307 (976)
.+.. ...... .+......++.+|++|++..-.. .....+...+... .....||.||.
T Consensus 85 ~~~~--~~~~~~---~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn 159 (268)
T 2r62_A 85 VGLG--ASRVRD---LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATN 159 (268)
T ss_dssp SSSC--SSSSST---THHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBS
T ss_pred cchH--HHHHHH---HHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecC
Confidence 1110 011111 12222335678999999942110 1122233222211 12245666776
Q ss_pred chhhhh-c-cC---CcceEecCCCCHHHHHHHHHHHh
Q 002044 308 KETVAR-M-ME---STDVIFIKELSEQECWALFKRFA 339 (976)
Q Consensus 308 ~~~v~~-~-~~---~~~~~~l~~L~~~~~~~Lf~~~~ 339 (976)
...... . .. ....+.+...+.++-.+++...+
T Consensus 160 ~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 160 RPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp CCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 543211 1 11 23567888888888888887665
No 225
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.14 E-value=9.5e-05 Score=72.45 Aligned_cols=115 Identities=13% Similarity=0.134 Sum_probs=81.2
Q ss_pred HHHHHHHHhcCCCcceEEecCcccccCCCCcccCccccCCCccceecC--cccc-----ccCccccccCCccEEecCCCC
Q 002044 569 AQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIPKGIKKLRHLRYLKL--YLVE-----KLPETCCELLNLQTLNMCGSP 641 (976)
Q Consensus 569 ~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp~~i~~L~~Lr~L~L--~~~~-----~lp~~i~~L~~L~~L~l~~~~ 641 (976)
.+.+...+...+.|+.|+|++|..+...+...+...+....+|++|+| +.+. .+.+.+...++|++|+|++|.
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 344566688999999999997644444445556677788899999999 3332 244455666889999999997
Q ss_pred CCcc-----cchhhcccCCCcEEEe--ccccccc-----CcccccCCCCCCcCCc
Q 002044 642 GLKR-----LPQGIGKLINLRHLMF--EVDYLEY-----MPKGIERLTSLRTLSE 684 (976)
Q Consensus 642 ~l~~-----lp~~i~~l~~L~~L~l--~~~~l~~-----lp~~i~~l~~L~~L~~ 684 (976)
+.. +...+...++|++|++ ++|.+.. +...+...++|+.|++
T Consensus 105 -i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L 158 (185)
T 1io0_A 105 -ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGY 158 (185)
T ss_dssp -CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred -CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEec
Confidence 653 5666778889999999 7787763 2334455566776654
No 226
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.11 E-value=9.1e-05 Score=69.47 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=21.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
..++|+|..|+|||||++.+++.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999983
No 227
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.06 E-value=0.0073 Score=67.78 Aligned_cols=179 Identities=14% Similarity=0.093 Sum_probs=94.5
Q ss_pred CCccccchhHHHHHHHHHhcccc------cCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-HHHHHH
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSS------EQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SIIEAL 245 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~l 245 (976)
-.+++|.++.++++.+.+..-.. -+....+-|.|+|++|+|||+||+.+++. ....|- .++. ++.
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~f~---~is~~~~~--- 86 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVPFF---HISGSDFV--- 86 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCCEE---EEEGGGTT---
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCCee---eCCHHHHH---
Confidence 35689998887777665432110 00112234789999999999999999983 322221 1211 111
Q ss_pred hCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCCCCCc--------------cCcHhHHHhhcC--CCCCcEEEEEcCch
Q 002044 246 EGFAPNLGELNSLLLRIDAFIARKKFLLILDDVWTDDY--------------SKWEPFRRCLIN--GHRESRILVTTRKE 309 (976)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~gs~iivTtR~~ 309 (976)
..... .........+.......+.+|+||++..-.. .....+...+.. ...+..||.||...
T Consensus 87 -~~~~g-~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 87 -ELFVG-VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp -TCCTT-HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred -HHHhc-ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 00001 0111222334444456789999999943110 011223222221 22455677777765
Q ss_pred hhhh-c-cC---CcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCc
Q 002044 310 TVAR-M-ME---STDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLP 366 (976)
Q Consensus 310 ~v~~-~-~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 366 (976)
.... . .. -...+.+...+.++-.+++..++... .......+ ..|++.+.|..
T Consensus 165 ~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~-~l~~~v~l----~~la~~t~G~s 221 (476)
T 2ce7_A 165 DILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK-PLAEDVNL----EIIAKRTPGFV 221 (476)
T ss_dssp GGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS-CBCTTCCH----HHHHHTCTTCC
T ss_pred hhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhC-CCcchhhH----HHHHHhcCCCc
Confidence 4322 1 11 13478888888888888887765321 11111122 33778888876
No 228
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.03 E-value=0.0031 Score=71.34 Aligned_cols=97 Identities=14% Similarity=0.063 Sum_probs=56.5
Q ss_pred eEEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEc----------C----chhhh-hccCCcceEecCCCCHHHHHHHH
Q 002044 271 FLLILDDVWTDDYSKWEPFRRCLINGHRESRILVTT----------R----KETVA-RMMESTDVIFIKELSEQECWALF 335 (976)
Q Consensus 271 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt----------R----~~~v~-~~~~~~~~~~l~~L~~~~~~~Lf 335 (976)
-++++|++..-+...++.+...+...... -+|+.| . ...+. ........+.+.+++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 38999999665555666676666554433 344344 2 11111 11133446799999999999999
Q ss_pred HHHhcCCCCCCcchhHHHHHHHHHhhc-CCCchHHHHH
Q 002044 336 KRFACFGRSLSECEQLEEIGKKIVGKC-KGLPLAAKTI 372 (976)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~i~~~c-~GlPLai~~~ 372 (976)
...+-....... .+....|++.+ +|.|-....+
T Consensus 376 ~~~~~~~~~~~~----~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 376 KIRAQTEGINIS----EEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHTCCBC----HHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHhCCCCC----HHHHHHHHHHccCCCHHHHHHH
Confidence 877522111111 33445577777 7777654443
No 229
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.92 E-value=0.0017 Score=75.06 Aligned_cols=164 Identities=15% Similarity=0.145 Sum_probs=77.9
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCC-Cc
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAP-NL 252 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~-~~ 252 (976)
.+++|.+.-.+.+.+.+.-..-...-...++.++|++|+||||||+.++. .....|-.+.+-.......+.+... ..
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~--~l~~~~~~i~~~~~~~~~~~~g~~~~~i 158 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK--SLGRKFVRISLGGVRDESEIRGHRRTYV 158 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH--HHTCEEEEECCCC---------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH--hcCCCeEEEEecccchhhhhhhHHHHHh
Confidence 45788888777775554321100012456899999999999999999987 3333332211111100011111000 00
Q ss_pred ccHHHHHHHHHHHHcCCceEEEEcCCCCCCcc----CcHhHHHhhcCCC---------------CCcEEEEEcCchhhhh
Q 002044 253 GELNSLLLRIDAFIARKKFLLILDDVWTDDYS----KWEPFRRCLINGH---------------RESRILVTTRKETVAR 313 (976)
Q Consensus 253 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~----~~~~l~~~l~~~~---------------~gs~iivTtR~~~v~~ 313 (976)
..................-++++|++..-... ....+...+.... ....||.||.......
T Consensus 159 g~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~ 238 (543)
T 3m6a_A 159 GAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIP 238 (543)
T ss_dssp -----CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSC
T ss_pred ccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCC
Confidence 00000111111112223448899999543221 1233333332110 2346777766533111
Q ss_pred -c-cCCcceEecCCCCHHHHHHHHHHHh
Q 002044 314 -M-MESTDVIFIKELSEQECWALFKRFA 339 (976)
Q Consensus 314 -~-~~~~~~~~l~~L~~~~~~~Lf~~~~ 339 (976)
. .....++.+.+++.++-.+++..+.
T Consensus 239 ~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 239 GPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp HHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred HHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 1 1223578899999998888887654
No 230
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.91 E-value=0.026 Score=62.52 Aligned_cols=107 Identities=13% Similarity=0.124 Sum_probs=67.5
Q ss_pred cccccC-ceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccC-ccccCCCccceecC-cccccc
Q 002044 546 SIFYAR-KLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIP-KGIKKLRHLRYLKL-YLVEKL 622 (976)
Q Consensus 546 ~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp-~~i~~L~~Lr~L~L-~~~~~l 622 (976)
++.+++ .|+++.+..+- .... ...|.+|.+|+.+.+..+. ...+..+. ..+..+.+|+.+.+ ..+..+
T Consensus 58 aF~~~~~~L~sI~iP~sv-t~Ig-----~~AF~~C~~L~~i~~~~n~---p~~l~~Ig~~aF~~c~~L~~i~~~~~~~~I 128 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDTV-TEIG-----SNAFYNCTSLKRVTIQDNK---PSCVKKIGRQAFMFCSELTDIPILDSVTEI 128 (394)
T ss_dssp TTTTCCSCCCEEEECTTC-CEEC-----TTTTTTCTTCCEEEEGGGC---CCCCCEECTTTTTTCTTCCBCGGGTTCSEE
T ss_pred hccCCCCcCEEEEECCCe-eEEh-----HHHhhCCccCceEeecCCC---CCeeeEechhhchhcccceeeccCCcccee
Confidence 344453 48888876531 1111 1228889999999887421 12244443 35667788888887 667777
Q ss_pred Cc-cccccCCccEEecCCCCCCcccch-hhcccCCCcEEEecc
Q 002044 623 PE-TCCELLNLQTLNMCGSPGLKRLPQ-GIGKLINLRHLMFEV 663 (976)
Q Consensus 623 p~-~i~~L~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~l~~ 663 (976)
+. .+..+.+|+.+.+... +..++. .+..+.+|+.+.+..
T Consensus 129 ~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCT
T ss_pred hhhhhhhhcccccccccce--eeeecccceecccccccccccc
Confidence 64 4677888999888653 444543 356788888888743
No 231
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.87 E-value=0.0071 Score=63.79 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=22.2
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhc
Q 002044 199 NAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 199 ~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+.+.++|++|+|||+||+.+++
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456888999999999999999998
No 232
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.84 E-value=0.009 Score=71.11 Aligned_cols=179 Identities=13% Similarity=0.106 Sum_probs=96.8
Q ss_pred CCccccchhHHHHHHHHHhc----ccc---cCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHH
Q 002044 173 LSEVRGRVEEKNALKSKLLC----KSS---EQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEAL 245 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~----~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l 245 (976)
-.++.|.++.+++|.+++.- ++- .+-...+-|.++|++|.|||+||+.+++. ...+| +.+... .+
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~---~l 274 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP---EI 274 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHH---HH
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhH---Hh
Confidence 34678888888777776532 111 11234678899999999999999999994 43333 233321 11
Q ss_pred hCCCCCcccHHHHH-HHHHHHHcCCceEEEEcCCCCC------CccCc-H----hHHHhhcC--CCCCcEEEEEcCchh-
Q 002044 246 EGFAPNLGELNSLL-LRIDAFIARKKFLLILDDVWTD------DYSKW-E----PFRRCLIN--GHRESRILVTTRKET- 310 (976)
Q Consensus 246 ~~~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~~------~~~~~-~----~l~~~l~~--~~~gs~iivTtR~~~- 310 (976)
..... .+.+... ..+....+..+.+|++|++..- ..... . .+...+.. ...+..||.||...+
T Consensus 275 ~sk~~--gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~ 352 (806)
T 3cf2_A 275 MSKLA--GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp HSSCT--THHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTT
T ss_pred hcccc--hHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhh
Confidence 11111 1222223 3333344567899999999431 00111 1 12222211 122344566665433
Q ss_pred hhhcc----CCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCc
Q 002044 311 VARMM----ESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLP 366 (976)
Q Consensus 311 v~~~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 366 (976)
+-..+ .-...+++..-+.++-.++|..+... ........+. .|++++.|.-
T Consensus 353 LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~-~~~~~dvdl~----~lA~~T~Gfs 407 (806)
T 3cf2_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN-MKLADDVDLE----QVANETHGHV 407 (806)
T ss_dssp SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSS-SEECTTCCHH----HHHHHCCSCC
T ss_pred cCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcC-CCCCcccCHH----HHHHhcCCCC
Confidence 22222 12457889888888888888766522 1112222344 3777787764
No 233
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.76 E-value=0.0018 Score=70.03 Aligned_cols=148 Identities=15% Similarity=0.162 Sum_probs=80.8
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCC---C
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFA---P 250 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~---~ 250 (976)
..++|++..++.+...+... .-+.++|.+|+|||+||+.+++ .....|..+-+........+.+.. .
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~--~~~~~~~~i~~~~~~~~~~l~g~~~~~~ 96 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAK--TMDLDFHRIQFTPDLLPSDLIGTMIYNQ 96 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHH--HTTCCEEEEECCTTCCHHHHHEEEEEET
T ss_pred cceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHH--HhCCCeEEEecCCCCChhhcCCceeecC
Confidence 46899999999888887642 2478999999999999999987 333333222221000001111100 0
Q ss_pred CcccHHHHHHHHHHHHcC---CceEEEEcCCCCCCccCcHhHHHhhcCC-----------CCCcEEEEEcCchh------
Q 002044 251 NLGELNSLLLRIDAFIAR---KKFLLILDDVWTDDYSKWEPFRRCLING-----------HRESRILVTTRKET------ 310 (976)
Q Consensus 251 ~~~~~~~~~~~l~~~l~~---k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtR~~~------ 310 (976)
..... .... ...++++|++..-.......+...+..+ .....||.|+....
T Consensus 97 ~~~~~---------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~ 167 (331)
T 2r44_A 97 HKGNF---------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYP 167 (331)
T ss_dssp TTTEE---------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCC
T ss_pred CCCce---------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCccc
Confidence 00000 0000 1258999999654433344444433321 22345555665222
Q ss_pred hhhc-cCCcc-eEecCCCCHHHHHHHHHHHhc
Q 002044 311 VARM-MESTD-VIFIKELSEQECWALFKRFAC 340 (976)
Q Consensus 311 v~~~-~~~~~-~~~l~~L~~~~~~~Lf~~~~~ 340 (976)
+... ..... .+.+++.+.++-.+++...+.
T Consensus 168 l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 168 LPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp CCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred CCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 1111 12222 588999999999999887763
No 234
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.72 E-value=0.02 Score=58.89 Aligned_cols=157 Identities=14% Similarity=0.094 Sum_probs=78.8
Q ss_pred CCccccchhHHHHHHHHHhccccc------CCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHh
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSSE------QTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALE 246 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~ 246 (976)
-.+++|.+..+.++.+....-... .-.-.+-+.|+|.+|+||||||+.++.. ... ..+.+...-+..
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~--~~~---~~i~~~~~~~~~-- 87 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--ARV---PFITASGSDFVE-- 87 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH--TTC---CEEEEEHHHHHH--
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCC---CEEEeeHHHHHH--
Confidence 356889877666665543211000 0001112899999999999999999983 221 223333321111
Q ss_pred CCCCCcccHHHHHHHHHHHHc-CCceEEEEcCCCCC----------CccC----cHhHHHhhcCCC--CCcEEEEEcCch
Q 002044 247 GFAPNLGELNSLLLRIDAFIA-RKKFLLILDDVWTD----------DYSK----WEPFRRCLINGH--RESRILVTTRKE 309 (976)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~----------~~~~----~~~l~~~l~~~~--~gs~iivTtR~~ 309 (976)
... .........+.+... ....++++|++..- .... ...+...+..+. ...-++.||...
T Consensus 88 -~~~--~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p 164 (254)
T 1ixz_A 88 -MFV--GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRP 164 (254)
T ss_dssp -SCT--THHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCG
T ss_pred -HHh--hHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCc
Confidence 000 111122223333332 35689999999210 0011 122333333322 223344455544
Q ss_pred hhhhc-c----CCcceEecCCCCHHHHHHHHHHHh
Q 002044 310 TVARM-M----ESTDVIFIKELSEQECWALFKRFA 339 (976)
Q Consensus 310 ~v~~~-~----~~~~~~~l~~L~~~~~~~Lf~~~~ 339 (976)
.+... . .....+.+...+.++-.+++...+
T Consensus 165 ~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 165 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp GGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred hhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 43221 1 224578888888888888887665
No 235
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.71 E-value=0.0021 Score=78.05 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=37.7
Q ss_pred CccccchhHHHHHHHHHhcccc---cCCCCeEEEEEEecCCchHHHHHHHHhc
Q 002044 174 SEVRGRVEEKNALKSKLLCKSS---EQTNAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..++|.+..++.+...+..... ........+.++|.+|+|||++|+.+++
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 4588999999888877753221 0122345789999999999999999987
No 236
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.70 E-value=0.0019 Score=66.46 Aligned_cols=62 Identities=15% Similarity=0.193 Sum_probs=34.8
Q ss_pred HHHHhcCCCcceEEecCcccccCCCCcc---cCccccCCCccceecC--ccccccCccccccC--CccEEecCCCC
Q 002044 573 QGLFDQLTGLRVLRIEGMKSLIGSGTNE---IPKGIKKLRHLRYLKL--YLVEKLPETCCELL--NLQTLNMCGSP 641 (976)
Q Consensus 573 ~~~~~~l~~Lr~L~L~~~~~l~~~~~~~---lp~~i~~L~~Lr~L~L--~~~~~lp~~i~~L~--~L~~L~l~~~~ 641 (976)
.....++++|+.|+|+ ++.+.. +|..+..+++|++|+| +.+..+ ..+..+. +|++|+|++|+
T Consensus 163 ~i~~~~l~~L~~L~Ls------~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 163 RIIEENIPELLSLNLS------NNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HHHHHHCTTCCEEECT------TSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTST
T ss_pred HHHHhhCCCCCEEECC------CCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCc
Confidence 3334678888888888 444433 3344455666666666 344444 2233333 56666666665
No 237
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.66 E-value=0.0041 Score=76.35 Aligned_cols=50 Identities=22% Similarity=0.303 Sum_probs=38.2
Q ss_pred CccccchhHHHHHHHHHhcccc---cCCCCeEEEEEEecCCchHHHHHHHHhc
Q 002044 174 SEVRGRVEEKNALKSKLLCKSS---EQTNAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..++|.+..++.+...+..... ........+.|+|.+|+|||++|+.+++
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999888888764321 1122346889999999999999999987
No 238
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.59 E-value=0.00093 Score=69.88 Aligned_cols=70 Identities=17% Similarity=0.211 Sum_probs=44.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCCCcccHHHHHHHHHHHHcCCceEEEEcCCC
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAPNLGELNSLLLRIDAFIARKKFLLILDDVW 279 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 279 (976)
-+++.|+|++|+||||||.+++.. .-..+.|++...-+.+. ....+.+.....+.+.+.+.+ +||+|++.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~---~~~~~le~~l~~i~~~l~~~~-LLVIDsI~ 192 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLS---GYNTDFNVFVDDIARAMLQHR-VIVIDSLK 192 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSST---TCBCCHHHHHHHHHHHHHHCS-EEEEECCT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhh---hhhcCHHHHHHHHHHHHhhCC-EEEEeccc
Confidence 357789999999999999999873 11224454430000000 011455666677777777767 99999993
No 239
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.57 E-value=0.036 Score=57.89 Aligned_cols=156 Identities=15% Similarity=0.110 Sum_probs=79.3
Q ss_pred CCccccchhHHHHHHHHHhccccc------CCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-HHHHHH
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSSE------QTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-SIIEAL 245 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~l 245 (976)
..+++|.+..++++.+....-... .-.-.+-|.|+|.+|+||||||+.++.. .. ...+.+.. .+....
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~--~~---~~~i~~~~~~~~~~~ 113 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--AR---VPFITASGSDFVEMF 113 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH--TT---CCEEEEEHHHHHHST
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH--cC---CCEEEecHHHHHHHH
Confidence 457899887766665544311100 0001112899999999999999999983 22 12233333 222111
Q ss_pred hCCCCCcccHHHHHHHHHHHH-cCCceEEEEcCCCCC----------CccCcH----hHHHhhcCCC--CCcEEEEEcCc
Q 002044 246 EGFAPNLGELNSLLLRIDAFI-ARKKFLLILDDVWTD----------DYSKWE----PFRRCLINGH--RESRILVTTRK 308 (976)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~~~~----~l~~~l~~~~--~gs~iivTtR~ 308 (976)
. .........+.+.. ...+.++|+|++..- ....+. .+...+..+. ....++.||..
T Consensus 114 ----~--~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~ 187 (278)
T 1iy2_A 114 ----V--GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNR 187 (278)
T ss_dssp ----T--THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESC
T ss_pred ----h--hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCC
Confidence 0 11111222222332 245689999999310 001111 2222232222 22334445554
Q ss_pred hhhhhc-----cCCcceEecCCCCHHHHHHHHHHHh
Q 002044 309 ETVARM-----MESTDVIFIKELSEQECWALFKRFA 339 (976)
Q Consensus 309 ~~v~~~-----~~~~~~~~l~~L~~~~~~~Lf~~~~ 339 (976)
..+... ......+.+...+.++-.+++...+
T Consensus 188 p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 223 (278)
T 1iy2_A 188 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 223 (278)
T ss_dssp TTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred chhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 433221 1224578898888888888887665
No 240
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.41 E-value=0.025 Score=58.77 Aligned_cols=157 Identities=14% Similarity=0.105 Sum_probs=80.4
Q ss_pred CCccccchhHHHHHHHHHhccccc-------CCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHH
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSSE-------QTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEAL 245 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l 245 (976)
-.++.|.++.+++|.+.+..+-.. +-.-.+-+.++|++|.||||||+.++.. .... .+++... .+
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~--~~~~---~i~i~g~---~l 80 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANE--SGLN---FISVKGP---EL 80 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHH--TTCE---EEEEETT---TT
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHH--cCCC---EEEEEcH---HH
Confidence 456888888888877654321100 0011112899999999999999999983 2221 2222210 00
Q ss_pred hCCCCCcccHHHHHHHHHHHH-cCCceEEEEcCCCCCC-------c----cCcHhHHHhhcCC--CCCcEEEEEcCchhh
Q 002044 246 EGFAPNLGELNSLLLRIDAFI-ARKKFLLILDDVWTDD-------Y----SKWEPFRRCLING--HRESRILVTTRKETV 311 (976)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~-------~----~~~~~l~~~l~~~--~~gs~iivTtR~~~v 311 (976)
.. ............+.+.. ...+.++++|++..-. . .....+...+..+ ....-++.+|....+
T Consensus 81 ~~--~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~ 158 (274)
T 2x8a_A 81 LN--MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDI 158 (274)
T ss_dssp CS--STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGG
T ss_pred Hh--hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhh
Confidence 00 00111122223333332 3467899999994310 0 0011222233322 223445566665544
Q ss_pred hhc-c----CCcceEecCCCCHHHHHHHHHHHh
Q 002044 312 ARM-M----ESTDVIFIKELSEQECWALFKRFA 339 (976)
Q Consensus 312 ~~~-~----~~~~~~~l~~L~~~~~~~Lf~~~~ 339 (976)
... . .-...+.+...+.++-.++|....
T Consensus 159 LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 159 IDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp SCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred CCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 322 1 224577888888888888887665
No 241
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.26 E-value=0.046 Score=60.08 Aligned_cols=77 Identities=13% Similarity=0.226 Sum_probs=46.0
Q ss_pred HhcCCCcceEEecCcccccCCCCcccC-ccccCCCccceecC-ccccccCc-cccccCCccEEecCCCCCCcccchhhcc
Q 002044 576 FDQLTGLRVLRIEGMKSLIGSGTNEIP-KGIKKLRHLRYLKL-YLVEKLPE-TCCELLNLQTLNMCGSPGLKRLPQGIGK 652 (976)
Q Consensus 576 ~~~l~~Lr~L~L~~~~~l~~~~~~~lp-~~i~~L~~Lr~L~L-~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~i~~ 652 (976)
+....+|+.+.+. .++..++ ..+.++.+|+.+.| ..+..+++ .+.+. +|+.+.+..+ +..++...-.
T Consensus 42 ~~~~~~i~~v~ip-------~~vt~Ig~~aF~~C~~L~~I~lp~~v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~ 111 (379)
T 4h09_A 42 YKDRDRISEVRVN-------SGITSIGEANFNSCYNMTKVTVASTVTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQ 111 (379)
T ss_dssp GGGGGGCSEEEEC-------TTEEEECTTTTTTCTTCCEEEECTTCCEECTTTTTTC-CCCEEEECTT--CCEECTTTTT
T ss_pred cccccCCEEEEeC-------CCccChHHHHhhCCCCCCEEEeCCcceEechhhhcCC-CCceEECCce--eeEeccceec
Confidence 4455667777765 2344554 35777788888888 56666664 34443 5666666432 5555555444
Q ss_pred cCCCcEEEec
Q 002044 653 LINLRHLMFE 662 (976)
Q Consensus 653 l~~L~~L~l~ 662 (976)
..+|+.+.+.
T Consensus 112 ~~~L~~i~lp 121 (379)
T 4h09_A 112 GTDLDDFEFP 121 (379)
T ss_dssp TCCCSEEECC
T ss_pred cCCcccccCC
Confidence 4567777763
No 242
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.14 E-value=0.017 Score=63.38 Aligned_cols=50 Identities=28% Similarity=0.262 Sum_probs=34.4
Q ss_pred CccccchhHHHHHHHHHhc----cc--------------------ccCCCCeEEEEEEecCCchHHHHHHHHhc
Q 002044 174 SEVRGRVEEKNALKSKLLC----KS--------------------SEQTNAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~----~~--------------------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..++|.+..++.+...+.. .. .........+.++|++|+|||++|+.+++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 3578888888877766620 00 00011234688999999999999999998
No 243
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.14 E-value=0.025 Score=68.51 Aligned_cols=157 Identities=13% Similarity=0.082 Sum_probs=85.9
Q ss_pred CCccccchhHHHHHHHHHhccccc-------CCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHH
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSSE-------QTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEAL 245 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l 245 (976)
-.+++|.+..++++.+++..+-.. .-.....|.|+|.+|+||||||+.+++. ....| +.+... .+
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~---~l 274 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP---EI 274 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHH---HH
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEch---Hh
Confidence 356899999888888877531100 0123457899999999999999999883 33333 233321 11
Q ss_pred hCCCCCcccHHH-HHHHHHHHHcCCceEEEEcCCCCCCc------c-----CcHhHHHhhcCC--CCCcEEEEEcCchh-
Q 002044 246 EGFAPNLGELNS-LLLRIDAFIARKKFLLILDDVWTDDY------S-----KWEPFRRCLING--HRESRILVTTRKET- 310 (976)
Q Consensus 246 ~~~~~~~~~~~~-~~~~l~~~l~~k~~LlVlDdv~~~~~------~-----~~~~l~~~l~~~--~~gs~iivTtR~~~- 310 (976)
..... ..... ....+.......+.++++|++..--. . ....+...+... ..+..+|.||....
T Consensus 275 ~~~~~--g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ 352 (806)
T 1ypw_A 275 MSKLA--GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp SSSST--THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTT
T ss_pred hhhhh--hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchh
Confidence 11111 11222 22333334445678999999932100 0 011222222221 23345666665532
Q ss_pred hhhccC----CcceEecCCCCHHHHHHHHHHHh
Q 002044 311 VARMME----STDVIFIKELSEQECWALFKRFA 339 (976)
Q Consensus 311 v~~~~~----~~~~~~l~~L~~~~~~~Lf~~~~ 339 (976)
+...+. ....+.+...+.++-.+++...+
T Consensus 353 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp SCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred cCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 222111 13457788888898888887664
No 244
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.13 E-value=0.0033 Score=64.77 Aligned_cols=77 Identities=23% Similarity=0.274 Sum_probs=48.8
Q ss_pred cCCCccceecC--cccc---ccCccccccCCccEEecCCCCCCcccchhhcccC--CCcEEEeccccccc-Cc-------
Q 002044 606 KKLRHLRYLKL--YLVE---KLPETCCELLNLQTLNMCGSPGLKRLPQGIGKLI--NLRHLMFEVDYLEY-MP------- 670 (976)
Q Consensus 606 ~~L~~Lr~L~L--~~~~---~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~--~L~~L~l~~~~l~~-lp------- 670 (976)
.++++|+.|+| +.+. .+|..+..+++|++|+|++|. +..+ ..+..+. +|++|++.+|.+.. +|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 45677888888 3444 344566678888888888776 6655 3345555 78888887776653 33
Q ss_pred ccccCCCCCCcCCc
Q 002044 671 KGIERLTSLRTLSE 684 (976)
Q Consensus 671 ~~i~~l~~L~~L~~ 684 (976)
..+..+++|+.|+.
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 12456677776653
No 245
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.08 E-value=0.068 Score=60.32 Aligned_cols=177 Identities=16% Similarity=0.147 Sum_probs=90.7
Q ss_pred cCCccccchhHHHHHHHHHh---ccccc---CCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHH
Q 002044 172 DLSEVRGRVEEKNALKSKLL---CKSSE---QTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEAL 245 (976)
Q Consensus 172 ~~~~~~Gr~~~~~~l~~~L~---~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l 245 (976)
...+++|.++.+.++.+... .+..- +-.-.+-|.|+|.+|+||||||+.++.. ....| +.+... .+
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~--~~~~~---i~i~g~---~~ 100 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--ARVPF---ITASGS---DF 100 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCCE---EEEEGG---GG
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEEehh---HH
Confidence 34578999887776665543 21100 0011223899999999999999999983 22222 222220 01
Q ss_pred hCCCCCcccHHHHHHHHHHHHcC----CceEEEEcCCCCCC----------ccCc----HhHHHhhcCC--CCCcEEEEE
Q 002044 246 EGFAPNLGELNSLLLRIDAFIAR----KKFLLILDDVWTDD----------YSKW----EPFRRCLING--HRESRILVT 305 (976)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~l~~----k~~LlVlDdv~~~~----------~~~~----~~l~~~l~~~--~~gs~iivT 305 (976)
... ........+...++. .+.++++|++..-. ...+ ..+...+..+ ..+..|+.|
T Consensus 101 ~~~-----~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAa 175 (499)
T 2dhr_A 101 VEM-----FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAA 175 (499)
T ss_dssp TSS-----CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEEC
T ss_pred HHh-----hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEe
Confidence 010 011122334444432 35799999993210 0111 2233333322 223445556
Q ss_pred cCchhhhhc-c----CCcceEecCCCCHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhhcCCCc
Q 002044 306 TRKETVARM-M----ESTDVIFIKELSEQECWALFKRFACFGRSLSECEQLEEIGKKIVGKCKGLP 366 (976)
Q Consensus 306 tR~~~v~~~-~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 366 (976)
|....+... . .....+.++..+.++-.+++..++-. ........+ ..|+..+.|..
T Consensus 176 tn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~-~~l~~dv~l----~~lA~~t~G~~ 236 (499)
T 2dhr_A 176 TNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG-KPLAEDVDL----ALLAKRTPGFV 236 (499)
T ss_dssp CSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSS-SCCCCSSTT----HHHHTTSCSCC
T ss_pred cCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhc-CCCChHHHH----HHHHHhcCCCC
Confidence 665543221 1 12457889988988888888766522 111111122 33777777765
No 246
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.03 E-value=0.003 Score=71.43 Aligned_cols=43 Identities=19% Similarity=0.120 Sum_probs=35.8
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcc
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
..++|++..++.+...+... .-|.++|.+|+|||+||+.+++.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 46899999998888877632 25789999999999999999984
No 247
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.90 E-value=0.24 Score=54.48 Aligned_cols=128 Identities=12% Similarity=0.083 Sum_probs=71.9
Q ss_pred ccccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceEeCccccCCCcCcccccccCCCCCCCCCccCccCCccc
Q 002044 793 IVSLNKLKKLRLLFCDKCEVMPALGILPSLEVLKIRFMKSVKRVGNEFLGTEISDHIHIQDGSMSSSSSSSANIAFPKLK 872 (976)
Q Consensus 793 ~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~fp~L~ 872 (976)
+..+.+|+.+.+.+....-.-..+..+++|+.+.+.. .++.++...+. .+.+|+
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~------------------------~c~~L~ 314 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS--RITELPESVFA------------------------GCISLK 314 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT------------------------TCTTCC
T ss_pred eeecccccEEecccccceecCcccccccccccccCCC--cccccCceeec------------------------CCCCcC
Confidence 4466777877775432111112355677888887753 35566553321 356777
Q ss_pred eeeecccccccccccCCCccccCCCcceEeeecCCCCCCCC-cCCCCCCCCCeEEEccCcchHHhhccCCCCCcccccCC
Q 002044 873 ELKFFCLDEWEEWDFGKEDITIMPQLSSMKISYCSKLNSLP-DQLLQSTTLEELEIIRCPILEERFKKDTGEDWSKITHI 951 (976)
Q Consensus 873 ~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp-~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l 951 (976)
.+.+-+ +++. ++...+..+.+|+.+.|-. .++.++ ..+.++++|+.+.+.++..... .+.....|
T Consensus 315 ~i~lp~--~v~~--I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~~~~--------~~~~~~~L 380 (394)
T 4gt6_A 315 SIDIPE--GITQ--ILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSRSQWN--------AISTDSGL 380 (394)
T ss_dssp EEECCT--TCCE--ECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCHHHHH--------TCBCCCCC
T ss_pred EEEeCC--cccE--ehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCceeehh--------hhhccCCC
Confidence 777743 2222 3344567889999999964 377776 4577899999999988733221 12234556
Q ss_pred Cceeecccc
Q 002044 952 PKIKIHGEY 960 (976)
Q Consensus 952 ~~l~~~~n~ 960 (976)
..+.+..+.
T Consensus 381 ~~i~i~~~~ 389 (394)
T 4gt6_A 381 QNLPVAPGS 389 (394)
T ss_dssp ---------
T ss_pred CEEEeCCCC
Confidence 666665443
No 248
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.89 E-value=0.0075 Score=58.26 Aligned_cols=107 Identities=21% Similarity=0.233 Sum_probs=59.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcccchhc--------ccccceeehH--HHHHHHh------C--CCCCcc-------cHH
Q 002044 202 QIISLVGMGGIGKTTLAQFAYNDEDVIS--------NFEKRMWNCE--SIIEALE------G--FAPNLG-------ELN 256 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~--------~f~~~~wv~~--~~~~~l~------~--~~~~~~-------~~~ 256 (976)
..|-|++-.|.||||.|-...- +... +|....|-.. .+++.+. + ...... ...
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 3566777777999999976654 2222 2222112222 3444441 0 000111 112
Q ss_pred HHHHHHHHHHcCCce-EEEEcCCCC---CCccCcHhHHHhhcCCCCCcEEEEEcCchh
Q 002044 257 SLLLRIDAFIARKKF-LLILDDVWT---DDYSKWEPFRRCLINGHRESRILVTTRKET 310 (976)
Q Consensus 257 ~~~~~l~~~l~~k~~-LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 310 (976)
......++.+.+.+| |||||++-. -.....+.+...+........||+|+|...
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 233445555655555 999999821 123455667777766666778999999753
No 249
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.70 E-value=0.02 Score=55.12 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 002044 203 IISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
.++|+|..|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998763
No 250
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.55 E-value=0.021 Score=57.79 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|.+|+|||||++.++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999885
No 251
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.32 E-value=0.13 Score=56.49 Aligned_cols=98 Identities=8% Similarity=0.094 Sum_probs=49.1
Q ss_pred cccCceeEEEecCcccchhhhHHHHHHHHhcCCCcceEEecCcccccCCCCcccC-ccccCCCccceecC-ccccccCcc
Q 002044 548 FYARKLRSLMLSYNTLNQKASAQVLQGLFDQLTGLRVLRIEGMKSLIGSGTNEIP-KGIKKLRHLRYLKL-YLVEKLPET 625 (976)
Q Consensus 548 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~lp-~~i~~L~~Lr~L~L-~~~~~lp~~ 625 (976)
....+|+++.+...- .... ...|.+|.+|+.+.|.. .+..++ ..+.++ .|..+.+ ..+..+++.
T Consensus 43 ~~~~~i~~v~ip~~v-t~Ig-----~~aF~~C~~L~~I~lp~-------~v~~Ig~~aF~~c-~l~~i~~~~~l~~I~~~ 108 (379)
T 4h09_A 43 KDRDRISEVRVNSGI-TSIG-----EANFNSCYNMTKVTVAS-------TVTSIGDGAFADT-KLQSYTGMERVKKFGDY 108 (379)
T ss_dssp GGGGGCSEEEECTTE-EEEC-----TTTTTTCTTCCEEEECT-------TCCEECTTTTTTC-CCCEEEECTTCCEECTT
T ss_pred ccccCCEEEEeCCCc-cChH-----HHHhhCCCCCCEEEeCC-------cceEechhhhcCC-CCceEECCceeeEeccc
Confidence 345566666664431 1111 11277777888877752 133333 234444 4555555 556666654
Q ss_pred ccccCCccEEecCCCCCCcccchhhcccCCCcEEEe
Q 002044 626 CCELLNLQTLNMCGSPGLKRLPQGIGKLINLRHLMF 661 (976)
Q Consensus 626 i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l 661 (976)
.-.-.+|+.+.+..+ +..+....-.-.+|..+.+
T Consensus 109 aF~~~~L~~i~lp~~--~~~i~~~~F~~~~l~~~~~ 142 (379)
T 4h09_A 109 VFQGTDLDDFEFPGA--TTEIGNYIFYNSSVKRIVI 142 (379)
T ss_dssp TTTTCCCSEEECCTT--CCEECTTTTTTCCCCEEEE
T ss_pred eeccCCcccccCCCc--cccccccccccceeeeeec
Confidence 333346777777653 3444433323335555544
No 252
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.24 E-value=0.019 Score=56.75 Aligned_cols=43 Identities=23% Similarity=0.248 Sum_probs=33.2
Q ss_pred cchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhc
Q 002044 178 GRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 178 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.|++.++++.+.+.... .....+|+|.|..|+||||+++.+..
T Consensus 2 ~~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CHHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35566777777776432 23567999999999999999999876
No 253
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.22 E-value=0.07 Score=54.00 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|..|.|||||++.++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999976
No 254
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.16 E-value=0.11 Score=52.97 Aligned_cols=37 Identities=22% Similarity=0.128 Sum_probs=27.1
Q ss_pred HHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhc
Q 002044 183 KNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 183 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+..++.... .....|.++|++|.|||++|..+++
T Consensus 90 ~~~l~~~l~~~~----~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 90 ASVFLGWATKKF----GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHHTTCS----TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhCCC----CCCcEEEEECCCCCCHHHHHHHHHh
Confidence 344566665321 2345799999999999999999987
No 255
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.16 E-value=0.12 Score=55.66 Aligned_cols=157 Identities=10% Similarity=-0.040 Sum_probs=98.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCCCcccHHHHHHHHHHH-HcCCceEEEEcCC
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAPNLGELNSLLLRIDAF-IARKKFLLILDDV 278 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv 278 (976)
-.++..++|..|.||++.|..+.+... ...|+....+. +. ...+..++...+... +-+++-++|+|++
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~------~~----~~~~~~~l~~~~~~~plf~~~kvvii~~~ 85 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFS------ID----PNTDWNAIFSLCQAMSLFASRQTLLLLLP 85 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEE------CC----TTCCHHHHHHHHHHHHHCCSCEEEEEECC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEE------ec----CCCCHHHHHHHhcCcCCccCCeEEEEECC
Confidence 345889999999999999998877311 22332111110 00 124455555444332 3466778899998
Q ss_pred CC-CCccCcHhHHHhhcCCCCCcEEEEEcCc-------hhhhhcc-CCcceEecCCCCHHHHHHHHHHHhcCCCCCCcch
Q 002044 279 WT-DDYSKWEPFRRCLINGHRESRILVTTRK-------ETVARMM-ESTDVIFIKELSEQECWALFKRFACFGRSLSECE 349 (976)
Q Consensus 279 ~~-~~~~~~~~l~~~l~~~~~gs~iivTtR~-------~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~ 349 (976)
.. -....++.+...+....+++.+|++|.. ..+...+ ....+++..+++.++..+.+...+-..+....
T Consensus 86 ~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g~~i~-- 163 (343)
T 1jr3_D 86 ENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELD-- 163 (343)
T ss_dssp SSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHTTCEEC--
T ss_pred CCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHcCCCCC--
Confidence 65 3445677788877766667777777643 1233332 34568999999999998888777633222111
Q ss_pred hHHHHHHHHHhhcCCCchHHHH
Q 002044 350 QLEEIGKKIVGKCKGLPLAAKT 371 (976)
Q Consensus 350 ~~~~~~~~i~~~c~GlPLai~~ 371 (976)
.+.+..+++.++|.+.++..
T Consensus 164 --~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 164 --DAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp --HHHHHHHHHSSTTCHHHHHH
T ss_pred --HHHHHHHHHHhchHHHHHHH
Confidence 34566699999998876654
No 256
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.15 E-value=0.076 Score=54.00 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||.+.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999965
No 257
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.10 E-value=0.055 Score=55.13 Aligned_cols=22 Identities=36% Similarity=0.685 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|..|.|||||++.++.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999965
No 258
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.91 E-value=0.085 Score=54.55 Aligned_cols=22 Identities=41% Similarity=0.646 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|..|.|||||++.++.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999965
No 259
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.79 E-value=0.11 Score=52.33 Aligned_cols=54 Identities=11% Similarity=0.060 Sum_probs=32.1
Q ss_pred HHHHHHHcCCceEEEEcCCCCC-CccCcHhHHHhh-cCCCCCcEEEEEcCchhhhh
Q 002044 260 LRIDAFIARKKFLLILDDVWTD-DYSKWEPFRRCL-INGHRESRILVTTRKETVAR 313 (976)
Q Consensus 260 ~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l-~~~~~gs~iivTtR~~~v~~ 313 (976)
-.+...+-.++-+++||..-.. |...-..+...+ .....|..||++|.+...+.
T Consensus 139 v~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~ 194 (229)
T 2pze_A 139 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 194 (229)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH
T ss_pred HHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH
Confidence 3455666677889999997432 222233344432 23234667888888866554
No 260
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.54 E-value=0.16 Score=60.42 Aligned_cols=98 Identities=17% Similarity=0.100 Sum_probs=58.5
Q ss_pred cCCccccchhHHHHHHHHHhccccc-------CCCCeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHH
Q 002044 172 DLSEVRGRVEEKNALKSKLLCKSSE-------QTNAVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEA 244 (976)
Q Consensus 172 ~~~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 244 (976)
...++.|.++.+++|.+.+..+-.. +....+-|.++|++|.|||.+|+++++. ....| +.++.. .
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~~f-----~~v~~~-~ 546 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQANF-----ISIKGP-E 546 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTCEE-----EECCHH-H
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCCce-----EEeccc-h
Confidence 3456788888888888776543211 1223456789999999999999999983 33332 111111 1
Q ss_pred HhCCCCCcccHHHHHHHHHHH-HcCCceEEEEcCCC
Q 002044 245 LEGFAPNLGELNSLLLRIDAF-IARKKFLLILDDVW 279 (976)
Q Consensus 245 l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~ 279 (976)
+.....+. .+..+..+.+. -+..+.+|++|++.
T Consensus 547 l~s~~vGe--se~~vr~lF~~Ar~~~P~IifiDEiD 580 (806)
T 3cf2_A 547 LLTMWFGE--SEANVREIFDKARQAAPCVLFFDELD 580 (806)
T ss_dssp HHTTTCSS--CHHHHHHHHHHHHTTCSEEEECSCGG
T ss_pred hhccccch--HHHHHHHHHHHHHHcCCceeechhhh
Confidence 22222222 23334444443 34578999999984
No 261
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.51 E-value=0.074 Score=55.89 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 35899999999999999999965
No 262
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.44 E-value=0.093 Score=50.82 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+|.|.|++|+||||+++.++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 263
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.42 E-value=0.028 Score=55.81 Aligned_cols=38 Identities=24% Similarity=0.259 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhc
Q 002044 182 EKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 182 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-+++|.+.+... .....+|+|+|..|.|||||++.+..
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344555555432 13567999999999999999999876
No 264
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.34 E-value=0.014 Score=60.14 Aligned_cols=106 Identities=16% Similarity=0.135 Sum_probs=55.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCCC---Cc----ccHHHHHHHHHHHHcCCceE
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFAP---NL----GELNSLLLRIDAFIARKKFL 272 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~~---~~----~~~~~~~~~l~~~l~~k~~L 272 (976)
.-.+++|+|..|+|||||++.+..- +...+...+++...-++.+..... .. .+.......+...|..++=+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~i 101 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 101 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCE
Confidence 3468999999999999999998762 221112222221100000000000 00 00012345566777777889
Q ss_pred EEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCchhhh
Q 002044 273 LILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKETVA 312 (976)
Q Consensus 273 lVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 312 (976)
|++|... |......+.... ..|.-|++||.+..+.
T Consensus 102 lllDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 102 IFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp EEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred EEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 9999995 333333332222 2355688888776543
No 265
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.23 E-value=0.077 Score=56.94 Aligned_cols=77 Identities=19% Similarity=0.129 Sum_probs=46.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH------HHHHHHhCCC-----CCcccHHHHHHHHHHHHc-
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE------SIIEALEGFA-----PNLGELNSLLLRIDAFIA- 267 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~------~~~~~l~~~~-----~~~~~~~~~~~~l~~~l~- 267 (976)
.-.++.|.|.+|+||||||..++.. ....-..++|++. ...+.+.-.. ....+.++....+...++
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRS 137 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhh
Confidence 3469999999999999999998873 2222123556654 2233332111 112344555555555554
Q ss_pred CCceEEEEcCC
Q 002044 268 RKKFLLILDDV 278 (976)
Q Consensus 268 ~k~~LlVlDdv 278 (976)
.+.-++|+|.+
T Consensus 138 ~~~dlvVIDSi 148 (356)
T 3hr8_A 138 GVVDLIVVDSV 148 (356)
T ss_dssp SCCSEEEEECT
T ss_pred cCCCeEEehHh
Confidence 45568999988
No 266
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.19 E-value=0.018 Score=55.48 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 267
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.13 E-value=0.14 Score=52.56 Aligned_cols=22 Identities=41% Similarity=0.685 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|..|.|||||++.++.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999975
No 268
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.12 E-value=0.037 Score=57.90 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=22.5
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhc
Q 002044 199 NAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 199 ~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
....+|+|+|..|+||||||+.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999998876
No 269
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.12 E-value=0.041 Score=58.19 Aligned_cols=46 Identities=17% Similarity=0.186 Sum_probs=33.3
Q ss_pred cccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhc
Q 002044 176 VRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 176 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
++|....+..+...+..... .....+|+|.|..|+||||+|+.+..
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~--~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPE--PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCC--CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccCC--CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34555566666655554332 34678999999999999999998865
No 270
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.11 E-value=0.067 Score=53.42 Aligned_cols=23 Identities=30% Similarity=0.115 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.++.|+|.+|+||||||..++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 271
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.08 E-value=0.026 Score=55.05 Aligned_cols=25 Identities=36% Similarity=0.387 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
.-.+++|+|++|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999873
No 272
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.03 E-value=0.024 Score=54.44 Aligned_cols=20 Identities=35% Similarity=0.689 Sum_probs=18.7
Q ss_pred EEEEEEecCCchHHHHHHHH
Q 002044 202 QIISLVGMGGIGKTTLAQFA 221 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v 221 (976)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 273
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.03 E-value=0.04 Score=58.54 Aligned_cols=45 Identities=22% Similarity=0.171 Sum_probs=31.4
Q ss_pred ccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhc
Q 002044 177 RGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 177 ~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
++-+.-.+++++.+...-. .+....|.|+|++|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 3444555666666542222 23566789999999999999999987
No 274
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.86 E-value=0.018 Score=55.75 Aligned_cols=22 Identities=23% Similarity=0.067 Sum_probs=18.8
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
+++.|+|..|+||||++..++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999966655
No 275
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.85 E-value=0.051 Score=54.12 Aligned_cols=106 Identities=12% Similarity=-0.046 Sum_probs=54.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH--HH-H-HHHhCC---CC---CcccHHHHHHHHHHHHcCC
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE--SI-I-EALEGF---AP---NLGELNSLLLRIDAFIARK 269 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~-~-~~l~~~---~~---~~~~~~~~~~~l~~~l~~k 269 (976)
.-.++.|.|..|+||||++..+.+. ...+-..+..+.. +. . ..+... .. ......++...+.+.+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~ 88 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFND 88 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCC
Confidence 3468899999999999999887763 3222222222211 00 0 011110 00 0112233444444444334
Q ss_pred ce-EEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCchh
Q 002044 270 KF-LLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKET 310 (976)
Q Consensus 270 ~~-LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 310 (976)
++ +||+|.+..-+.+..+.+. .+.+ .|-.||+|.+..+
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLDKN 127 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCSBC
T ss_pred CCCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEecccc
Confidence 44 9999999432223333333 2333 2678999998654
No 276
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.84 E-value=0.029 Score=54.12 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999986
No 277
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.80 E-value=0.027 Score=53.79 Aligned_cols=22 Identities=27% Similarity=0.134 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+|+|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999987
No 278
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.77 E-value=0.12 Score=55.85 Aligned_cols=77 Identities=17% Similarity=0.078 Sum_probs=45.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH-----HH-HHHHhCCC-----CCcccHHHHHHHHHHHHcC-
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE-----SI-IEALEGFA-----PNLGELNSLLLRIDAFIAR- 268 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-----~~-~~~l~~~~-----~~~~~~~~~~~~l~~~l~~- 268 (976)
-+++.|.|.+|+||||||..++.. ....-..++|++. .+ .+.+.-.. ....+.++....+....+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~ 151 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSG 151 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTT
T ss_pred CcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcC
Confidence 348888999999999999888763 2222235677765 11 22221110 1123445555556555543
Q ss_pred CceEEEEcCCC
Q 002044 269 KKFLLILDDVW 279 (976)
Q Consensus 269 k~~LlVlDdv~ 279 (976)
..-+||+|.+-
T Consensus 152 ~~~lVVIDsl~ 162 (366)
T 1xp8_A 152 AIDVVVVDSVA 162 (366)
T ss_dssp CCSEEEEECTT
T ss_pred CCCEEEEeChH
Confidence 45599999883
No 279
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.74 E-value=0.026 Score=55.61 Aligned_cols=23 Identities=39% Similarity=0.377 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.++|.|+|+.|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 280
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.64 E-value=0.14 Score=54.90 Aligned_cols=56 Identities=18% Similarity=0.147 Sum_probs=32.8
Q ss_pred HHHHHHHHcCCceEEEEcCCCCC-CccCcHhHHHhhcC--CCCCcEEEEEcCchhhhhc
Q 002044 259 LLRIDAFIARKKFLLILDDVWTD-DYSKWEPFRRCLIN--GHRESRILVTTRKETVARM 314 (976)
Q Consensus 259 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~iivTtR~~~v~~~ 314 (976)
.-.|...|..++-+|++|.--.. |...-..+...+.. ...|.-||++|.+-.++..
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~ 229 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKR 229 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 33466677788889999987432 22222233333332 1236678888888765543
No 281
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.63 E-value=0.077 Score=57.17 Aligned_cols=37 Identities=19% Similarity=0.118 Sum_probs=26.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE 239 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 239 (976)
-+++.|.|.+|+||||||..++.. ....-..++|++.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~ 99 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDA 99 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeC
Confidence 358999999999999999888763 2222234666654
No 282
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.59 E-value=0.062 Score=56.22 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.4
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhc
Q 002044 199 NAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 199 ~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
....+|.|.|++|+||||+|+.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999976
No 283
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.57 E-value=0.18 Score=49.77 Aligned_cols=105 Identities=15% Similarity=0.189 Sum_probs=53.4
Q ss_pred EEEEEecCCchHHHHHHHHhcccchhcccccce-eeh----HHHHHHHhCCCCCc---ccH---HHHHHHHHHHHcCCce
Q 002044 203 IISLVGMGGIGKTTLAQFAYNDEDVISNFEKRM-WNC----ESIIEALEGFAPNL---GEL---NSLLLRIDAFIARKKF 271 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~-wv~----~~~~~~l~~~~~~~---~~~---~~~~~~l~~~l~~k~~ 271 (976)
.|.+.|.||+||||+|..++... ....++..+ .+. ......+.+..... ... ......+...+..+.=
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l-~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~~~pd 86 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ-LRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLKAAPS 86 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH-HHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHHHCCS
T ss_pred EEEEECCCCCcHHHHHHHHHHHH-HHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHhcCCC
Confidence 47889999999999988877631 223344322 221 12233333321100 000 0000112222334667
Q ss_pred EEEEcCCCCC------CccCcHhHHHhhcCCCCCcEEEEEcCchhh
Q 002044 272 LLILDDVWTD------DYSKWEPFRRCLINGHRESRILVTTRKETV 311 (976)
Q Consensus 272 LlVlDdv~~~------~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 311 (976)
++|+|++-.. ...-|..+...++. |-.|+.|+..++.
T Consensus 87 lvIVDElG~~~~~~~r~~~~~qDV~~~l~s---gidVitT~Nlqh~ 129 (228)
T 2r8r_A 87 LVLVDELAHTNAPGSRHTKRWQDIQELLAA---GIDVYTTVNVQHL 129 (228)
T ss_dssp EEEESCTTCBCCTTCSSSBHHHHHHHHHHT---TCEEEEEEEGGGB
T ss_pred EEEEeCCCCCCcccchhHHHHHHHHHHHcC---CCCEEEEcccccc
Confidence 9999987432 12356666554443 4468888875543
No 284
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.55 E-value=0.029 Score=54.21 Aligned_cols=23 Identities=17% Similarity=0.421 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-++++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999976
No 285
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.49 E-value=0.049 Score=59.44 Aligned_cols=49 Identities=27% Similarity=0.247 Sum_probs=35.5
Q ss_pred ccccchhHHHHHHHHHhcc-------c--ccCCCCeEEEEEEecCCchHHHHHHHHhc
Q 002044 175 EVRGRVEEKNALKSKLLCK-------S--SEQTNAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 175 ~~~Gr~~~~~~l~~~L~~~-------~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.++|.+..++.+...+... . .......+.|.++|++|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4789998888888777310 0 00011345689999999999999999998
No 286
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.48 E-value=0.039 Score=54.31 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+|+|+|+.|.||||+|+.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 287
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.42 E-value=0.031 Score=54.20 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+.|.|+|+.|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999987
No 288
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.40 E-value=0.11 Score=55.90 Aligned_cols=76 Identities=17% Similarity=0.113 Sum_probs=43.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH------HHHHHHhCCC-----CCcccHHHHHHHHHHHHc-C
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE------SIIEALEGFA-----PNLGELNSLLLRIDAFIA-R 268 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~------~~~~~l~~~~-----~~~~~~~~~~~~l~~~l~-~ 268 (976)
-+++.|+|.+|+||||||..++.. ....=..++|++. ...+.+.-.. ....+.++....+....+ .
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~ 138 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSG 138 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcC
Confidence 458999999999999999988763 2222234566654 1122221110 011234444444444443 3
Q ss_pred CceEEEEcCC
Q 002044 269 KKFLLILDDV 278 (976)
Q Consensus 269 k~~LlVlDdv 278 (976)
+.-+||+|.+
T Consensus 139 ~~~lIVIDsl 148 (349)
T 2zr9_A 139 ALDIIVIDSV 148 (349)
T ss_dssp CCSEEEEECG
T ss_pred CCCEEEEcCh
Confidence 4568999988
No 289
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.39 E-value=0.25 Score=54.47 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+|.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999988875
No 290
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.38 E-value=0.12 Score=56.13 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|..|.|||||.+.++.
T Consensus 48 e~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 5899999999999999999975
No 291
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.33 E-value=0.03 Score=53.57 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 292
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.31 E-value=0.065 Score=54.96 Aligned_cols=41 Identities=22% Similarity=0.178 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhc
Q 002044 182 EKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 182 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..+++...+...... .....+|.|+|++|+||||+|+.+..
T Consensus 14 ~~~~~~~~~~~~~~~-~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 14 ALARNLRSLTRGKKS-SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHTTCCC-CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHccCCc-ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344444444433221 34568999999999999999999976
No 293
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.24 E-value=0.045 Score=53.41 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 294
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.21 E-value=0.048 Score=58.80 Aligned_cols=105 Identities=10% Similarity=0.088 Sum_probs=58.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcccchhcccccceeehHHHHHHHhCCC-------CCcccHHHHHHHHHHHHcCCceEEE
Q 002044 202 QIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCESIIEALEGFA-------PNLGELNSLLLRIDAFIARKKFLLI 274 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~l~~~~-------~~~~~~~~~~~~l~~~l~~k~~LlV 274 (976)
.+++|+|..|.||||+.+.+..- +.......++...+..+...... ............+...|...+=+|+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil 201 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL 201 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence 49999999999999999988762 22111111111000000000000 0000112334578888889999999
Q ss_pred EcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCchhhhh
Q 002044 275 LDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKETVAR 313 (976)
Q Consensus 275 lDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 313 (976)
+|.+. +.+.++.+.... ..|.-||+||...+.+.
T Consensus 202 lDEp~--d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 202 VGEMR--DLETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp ESCCC--SHHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred cCCCC--CHHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 99995 334444444332 23556888888765543
No 295
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.19 E-value=0.043 Score=53.53 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 296
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.13 E-value=0.044 Score=52.54 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+|+|+|+.|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 297
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.02 E-value=0.049 Score=53.00 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 298
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.01 E-value=0.047 Score=52.15 Aligned_cols=24 Identities=29% Similarity=0.638 Sum_probs=20.4
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.-.+++|+|..|.|||||++.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 346899999999999999997553
No 299
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.00 E-value=0.19 Score=51.02 Aligned_cols=22 Identities=32% Similarity=0.370 Sum_probs=19.8
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.++.|.|.+|+||||||..++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999988765
No 300
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.92 E-value=0.13 Score=56.80 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 002044 203 IISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
.++|+|.+|+|||||++.+..+
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhh
Confidence 5889999999999999999873
No 301
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.91 E-value=0.041 Score=52.36 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=21.0
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999987
No 302
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.89 E-value=0.042 Score=54.08 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+|+|+|+.|+||||+++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 303
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.88 E-value=0.059 Score=53.34 Aligned_cols=24 Identities=38% Similarity=0.423 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+|+|+|..|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 304
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.87 E-value=0.049 Score=55.89 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
++|.|.|++|+||||||+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999986
No 305
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.85 E-value=0.055 Score=53.27 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.7
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhc
Q 002044 199 NAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 199 ~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
....+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999987
No 306
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.82 E-value=0.045 Score=51.77 Aligned_cols=24 Identities=33% Similarity=0.349 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..++++|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999887
No 307
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.79 E-value=0.035 Score=53.59 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.6
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
|.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999876
No 308
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.78 E-value=0.077 Score=53.27 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
...+|+|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5788999999999999999998863
No 309
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.77 E-value=0.04 Score=54.31 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..+|+|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 310
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.71 E-value=0.06 Score=53.05 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.4
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhc
Q 002044 199 NAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 199 ~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
....+|+|.|+.|+||||+|+.+.+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999986
No 311
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.71 E-value=0.048 Score=54.04 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
..++|+|+|+.|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3468999999999999999999863
No 312
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.69 E-value=0.05 Score=52.95 Aligned_cols=22 Identities=32% Similarity=0.676 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 313
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.67 E-value=0.055 Score=55.51 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=22.0
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhc
Q 002044 199 NAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 199 ~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
....+|+|.|+.|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999876
No 314
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.65 E-value=0.054 Score=53.48 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999976
No 315
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.64 E-value=0.04 Score=53.20 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.++|.|.|++|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45789999999999999999986
No 316
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.64 E-value=0.062 Score=53.34 Aligned_cols=24 Identities=38% Similarity=0.346 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+|+|+|..|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999877
No 317
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.64 E-value=0.041 Score=53.45 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 318
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.57 E-value=0.06 Score=56.97 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=20.8
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhc
Q 002044 199 NAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 199 ~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
++.+||+|.|-|||||||.|.-+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 3679999999999999999866543
No 319
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.54 E-value=0.062 Score=53.11 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 320
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.54 E-value=0.048 Score=59.08 Aligned_cols=45 Identities=22% Similarity=0.218 Sum_probs=32.7
Q ss_pred CCccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhc
Q 002044 173 LSEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 173 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|.+..++.+...+.... ..-|.|+|.+|+|||++|+.+++
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHH
T ss_pred chhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHH
Confidence 3468999886665544443222 12388999999999999999987
No 321
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.54 E-value=0.044 Score=54.16 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..++|+|+|++|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999986
No 322
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.53 E-value=0.056 Score=53.32 Aligned_cols=21 Identities=43% Similarity=0.485 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999876
No 323
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.52 E-value=0.25 Score=51.89 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+|+|+|.+|+||||++..++.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 568999999999999999999886
No 324
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.52 E-value=0.073 Score=53.21 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=29.7
Q ss_pred cchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhcc
Q 002044 178 GRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 178 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
+.++..+++...+. ....++|+|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~------~~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALR------ESGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHH------HHTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhc------ccCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 33445555555543 225789999999999999999988763
No 325
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.49 E-value=0.055 Score=53.32 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999987
No 326
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.48 E-value=0.06 Score=52.57 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..+|+|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 327
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.48 E-value=0.055 Score=52.44 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..+|+|+|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 328
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.40 E-value=0.062 Score=55.37 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 329
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.38 E-value=0.057 Score=52.81 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 330
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=92.38 E-value=0.18 Score=52.41 Aligned_cols=75 Identities=9% Similarity=0.111 Sum_probs=43.2
Q ss_pred EEEEEecCCchHHHHHHHHhcccchhcc--cccceeehH------HHHHHHhCCCC-----CcccHHHHHHHHHHHH---
Q 002044 203 IISLVGMGGIGKTTLAQFAYNDEDVISN--FEKRMWNCE------SIIEALEGFAP-----NLGELNSLLLRIDAFI--- 266 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~------~~~~~l~~~~~-----~~~~~~~~~~~l~~~l--- 266 (976)
++-|.|.+|+||||||.+++.. .... =..++|++. ..++.+.-... ...+.++....+.+.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i 107 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAI 107 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHh
Confidence 6899999999999999888763 3332 234677765 22333321111 1123444412222333
Q ss_pred -cCCceEEEEcCCC
Q 002044 267 -ARKKFLLILDDVW 279 (976)
Q Consensus 267 -~~k~~LlVlDdv~ 279 (976)
+.+.-+||+|-|-
T Consensus 108 ~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 108 ERGEKVVVFIDSLG 121 (333)
T ss_dssp CTTCCEEEEEECST
T ss_pred hccCceEEEEeccc
Confidence 3457799999983
No 331
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.36 E-value=0.05 Score=52.19 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.|.|.|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 332
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.32 E-value=0.24 Score=53.00 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|..|.|||||.+.++.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999964
No 333
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.24 E-value=0.044 Score=53.06 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
+|+|.|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 334
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.21 E-value=0.063 Score=53.06 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..+|+|+|+.|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 335
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.18 E-value=0.076 Score=51.40 Aligned_cols=23 Identities=30% Similarity=0.268 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...|+|.|++|+||||+|+.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 336
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.16 E-value=0.064 Score=53.96 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 337
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.11 E-value=0.053 Score=53.26 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999876
No 338
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.07 E-value=0.079 Score=52.54 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.9
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhc
Q 002044 199 NAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 199 ~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+||.|.|++|+||||.|+.+++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999887
No 339
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.04 E-value=0.076 Score=51.71 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 340
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.02 E-value=0.23 Score=53.14 Aligned_cols=34 Identities=21% Similarity=-0.078 Sum_probs=25.6
Q ss_pred HHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhc
Q 002044 185 ALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 185 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
++++.+..-. .-..++|+|.+|+|||||++.+.+
T Consensus 163 raID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 163 RVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHH
T ss_pred eeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHH
Confidence 4555555322 234789999999999999999887
No 341
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.00 E-value=0.29 Score=52.84 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|..|.|||||.+.++.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHHc
Confidence 5899999999999999999975
No 342
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.98 E-value=0.065 Score=52.12 Aligned_cols=24 Identities=17% Similarity=0.491 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..++|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 456899999999999999999876
No 343
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=91.94 E-value=0.26 Score=52.97 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
.-.++.|+|.+|+||||||..++..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999988763
No 344
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.92 E-value=0.054 Score=51.74 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
++|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 345
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.92 E-value=0.074 Score=52.12 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..+|+|.|++|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 346
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.90 E-value=0.083 Score=55.84 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+|+|+|..|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 567999999999999999999876
No 347
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.87 E-value=0.078 Score=52.57 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+|.|.|++|+||||+|+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 348
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.85 E-value=0.17 Score=53.58 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+|+|+|..|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999876
No 349
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.85 E-value=0.095 Score=50.99 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=22.6
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhc
Q 002044 199 NAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 199 ~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
....+|+|.|+.|+||||+|+.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999886
No 350
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.80 E-value=0.06 Score=58.65 Aligned_cols=105 Identities=15% Similarity=0.135 Sum_probs=54.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchhcccccce-eehHHHHH-HHhCCCC--Cc----ccHHHHHHHHHHHHcCCce
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRM-WNCESIIE-ALEGFAP--NL----GELNSLLLRIDAFIARKKF 271 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~-wv~~~~~~-~l~~~~~--~~----~~~~~~~~~l~~~l~~k~~ 271 (976)
.-.+++|+|..|+||||+++.+..- +.......+ ++... .+ ....... .. .+.......+...+...+-
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~--~~~~~~g~I~~~e~~-~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd 211 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDP-IEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPD 211 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH--HHHHSCCEEEEEESS-CCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh--cCcCCCcEEEEeccc-HhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcC
Confidence 3468999999999999999998762 211111222 11100 00 0000000 00 0111224467777777788
Q ss_pred EEEEcCCCCCCccCcHhHHHhhcCCCCCcEEEEEcCchhhh
Q 002044 272 LLILDDVWTDDYSKWEPFRRCLINGHRESRILVTTRKETVA 312 (976)
Q Consensus 272 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 312 (976)
+|++|.+. +...+....... ..|.-|+.|+....+.
T Consensus 212 ~illdE~~--d~e~~~~~l~~~---~~g~~vi~t~H~~~~~ 247 (372)
T 2ewv_A 212 VIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAI 247 (372)
T ss_dssp EEEESCCC--SHHHHHHHHHHH---TTTCEEEECCCCCSHH
T ss_pred EEEECCCC--CHHHHHHHHHHH---hcCCEEEEEECcchHH
Confidence 99999995 323333322222 3455677777765433
No 351
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.78 E-value=0.081 Score=52.02 Aligned_cols=24 Identities=29% Similarity=0.218 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+|.|.|++|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999987
No 352
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.76 E-value=0.093 Score=49.18 Aligned_cols=24 Identities=33% Similarity=0.335 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.-.+++|+|..|.|||||++.++.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 446999999999999999999987
No 353
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.74 E-value=0.12 Score=55.87 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|+.|.|||||.+.++.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHc
Confidence 4899999999999999999965
No 354
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.74 E-value=0.079 Score=54.07 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..+|+|+|+.|+|||||++.++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
No 355
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.73 E-value=0.078 Score=50.33 Aligned_cols=21 Identities=29% Similarity=0.369 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 356
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.66 E-value=0.084 Score=52.22 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999986
No 357
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.65 E-value=0.13 Score=52.18 Aligned_cols=24 Identities=21% Similarity=0.112 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+|+|.|++|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999976
No 358
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.56 E-value=0.076 Score=53.11 Aligned_cols=23 Identities=30% Similarity=0.268 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 359
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.42 E-value=0.099 Score=50.26 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+|+|.|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346889999999999999999987
No 360
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.42 E-value=0.063 Score=51.83 Aligned_cols=23 Identities=35% Similarity=0.326 Sum_probs=16.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 361
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=91.41 E-value=0.26 Score=52.56 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhcc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
-.++.|+|.+|+||||||..++..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHH
Confidence 358999999999999999988763
No 362
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.39 E-value=0.088 Score=51.32 Aligned_cols=21 Identities=43% Similarity=0.687 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 363
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.36 E-value=0.1 Score=53.13 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+|+|.|..|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 364
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.33 E-value=0.11 Score=54.08 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=22.1
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhc
Q 002044 199 NAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 199 ~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
....+|+|.|+.|+||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999873
No 365
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.30 E-value=0.094 Score=53.71 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 366
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.26 E-value=0.4 Score=55.74 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999865
No 367
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.25 E-value=0.091 Score=55.27 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+|+|+|.+|+||||+++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456999999999999999999986
No 368
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.23 E-value=0.071 Score=50.72 Aligned_cols=22 Identities=41% Similarity=0.475 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
++++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 369
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.13 E-value=0.097 Score=52.02 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..+|+|.|+.|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 370
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.11 E-value=0.086 Score=52.63 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999876
No 371
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.08 E-value=0.062 Score=53.42 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
+|+|.|..|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 372
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.06 E-value=0.33 Score=56.39 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.+..
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999865
No 373
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.99 E-value=0.15 Score=49.48 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
....|+|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999998874
No 374
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.98 E-value=0.1 Score=52.40 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999986
No 375
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.91 E-value=0.11 Score=51.55 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..+|+|.|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 376
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.84 E-value=0.12 Score=51.16 Aligned_cols=24 Identities=33% Similarity=0.268 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+|.|.|+.|+||||+|+.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 377
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=90.84 E-value=0.45 Score=54.16 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=30.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchhccc-ccceeehHHHHHHHhC
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVISNF-EKRMWNCESIIEALEG 247 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~l~~ 247 (976)
...+|.++|++|.||||+|+.+.. .....| +..++-...+...+.+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~--~L~~~~~d~~v~s~D~~r~~~~~ 80 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTR--YLNWIGVPTKVFNVGEYRREAVK 80 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH--HHHHTTCCEEEEEHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHhhcCCCeEEecccHHHHHhcc
Confidence 457899999999999999999987 332223 3333333344444443
No 378
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=90.80 E-value=0.21 Score=53.12 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=22.5
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhc
Q 002044 199 NAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 199 ~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
....+++|+|..|+||||+++.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999886
No 379
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.75 E-value=0.12 Score=51.58 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.-.+++|+|+.|+|||||.+.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999876
No 380
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.74 E-value=0.097 Score=50.76 Aligned_cols=22 Identities=41% Similarity=0.437 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 002044 203 IISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
+++|+|..|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999999873
No 381
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=90.73 E-value=0.51 Score=54.83 Aligned_cols=22 Identities=36% Similarity=0.628 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|..|.|||||++.+..
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 5899999999999999999965
No 382
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=90.72 E-value=0.17 Score=55.86 Aligned_cols=50 Identities=22% Similarity=0.327 Sum_probs=35.8
Q ss_pred CccccchhHHHHHHHHHhcc--------cccCCCCeEEEEEEecCCchHHHHHHHHhc
Q 002044 174 SEVRGRVEEKNALKSKLLCK--------SSEQTNAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..++|.++.++.+...+... .-......+-|.++|++|+||||+|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 46899988888887766321 000011235588999999999999999987
No 383
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.66 E-value=0.12 Score=49.97 Aligned_cols=36 Identities=22% Similarity=0.169 Sum_probs=26.0
Q ss_pred HHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhc
Q 002044 183 KNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 183 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
+..+..++..- .....+.|+|++|+||||+|..+++
T Consensus 45 ~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 45 LGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHH
Confidence 45555555421 1234689999999999999988887
No 384
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.61 E-value=0.13 Score=51.23 Aligned_cols=23 Identities=35% Similarity=0.378 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
No 385
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.61 E-value=0.13 Score=53.97 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+++|+|..|+||||+++.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 386
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.60 E-value=0.12 Score=50.56 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.|+|.|..|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 387
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.58 E-value=0.12 Score=51.53 Aligned_cols=21 Identities=38% Similarity=0.476 Sum_probs=19.1
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 388
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.57 E-value=0.13 Score=51.58 Aligned_cols=24 Identities=33% Similarity=0.289 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.-.+++|+|..|+|||||++.++.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999975
No 389
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.56 E-value=0.087 Score=53.62 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 390
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=90.55 E-value=0.73 Score=51.77 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+.|.|.+|+||||++..+..
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 889999999999999998887
No 391
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.54 E-value=0.12 Score=54.66 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
++|+|.|+.|+||||||+.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999887
No 392
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=90.53 E-value=0.12 Score=54.31 Aligned_cols=24 Identities=33% Similarity=0.295 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..++|+|+|.+|+||||++..++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999998876
No 393
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.52 E-value=0.097 Score=52.42 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...|.|.|++|+||||+|+.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 394
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=90.45 E-value=0.27 Score=52.39 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
.-.++.|+|.+|+||||+|..++..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999988753
No 395
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.41 E-value=0.14 Score=54.15 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..++|.|+|+.|+||||||..++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999988
No 396
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.37 E-value=0.25 Score=53.48 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=22.2
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhc
Q 002044 199 NAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 199 ~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
....+|+|+|.+|+|||||+..+..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999988865
No 397
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=90.37 E-value=0.4 Score=53.08 Aligned_cols=76 Identities=18% Similarity=0.251 Sum_probs=46.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcccchhcccccceeehH--------HHHHHHhCCC-C-----------------Ccc--
Q 002044 202 QIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE--------SIIEALEGFA-P-----------------NLG-- 253 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--------~~~~~l~~~~-~-----------------~~~-- 253 (976)
.-++|.|.+|+|||+|+.++.+.. .+.+-+.++++-+ ++.+.+.+.. . +..
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~ 244 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPG 244 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHH
Confidence 467999999999999999988731 1223455566543 4555554211 0 000
Q ss_pred ---cHHHHHHHHHHHHc---CCceEEEEcCC
Q 002044 254 ---ELNSLLLRIDAFIA---RKKFLLILDDV 278 (976)
Q Consensus 254 ---~~~~~~~~l~~~l~---~k~~LlVlDdv 278 (976)
......-.+.++++ ++.+|+++||+
T Consensus 245 ~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 245 ARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp HHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 01122334556665 47999999999
No 398
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.33 E-value=0.13 Score=51.28 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=19.0
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 399
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.31 E-value=0.13 Score=50.63 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
.+|+|.|+.|+||||+++.+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999873
No 400
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.28 E-value=0.14 Score=51.35 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|..|.|||||.+.++.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999986
No 401
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.25 E-value=0.12 Score=49.27 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..++++|+|..|+|||||++.+..
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHH
Confidence 467899999999999999999886
No 402
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.20 E-value=0.13 Score=52.36 Aligned_cols=23 Identities=35% Similarity=0.307 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|+|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 35899999999999999999874
No 403
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=90.13 E-value=0.45 Score=55.19 Aligned_cols=23 Identities=35% Similarity=0.535 Sum_probs=20.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.+..
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 35899999999999999998865
No 404
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.10 E-value=0.14 Score=51.67 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|..|.|||||.+.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4899999999999999999986
No 405
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.09 E-value=0.13 Score=52.00 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|..|.|||||.+.++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999987
No 406
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.09 E-value=0.5 Score=55.01 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.+..
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 45899999999999999999965
No 407
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.98 E-value=0.14 Score=50.48 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999987
No 408
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.90 E-value=0.12 Score=51.52 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..|.|.|++|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999987
No 409
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.82 E-value=0.11 Score=52.41 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=16.0
Q ss_pred EEEEEEecCCchHHHHHHHHh-c
Q 002044 202 QIISLVGMGGIGKTTLAQFAY-N 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~-~ 223 (976)
.+++|+|+.|+|||||++.+. .
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 589999999999999999998 5
No 410
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.81 E-value=0.15 Score=53.57 Aligned_cols=22 Identities=36% Similarity=0.347 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
++|.|+|+.|+||||||+.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 411
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.75 E-value=0.16 Score=59.30 Aligned_cols=42 Identities=26% Similarity=0.341 Sum_probs=35.5
Q ss_pred CccccchhHHHHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhc
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|.+..++.+...+... ..+.|+|.+|+||||||+.++.
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhc
Confidence 46899998888888777631 3789999999999999999987
No 412
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.72 E-value=0.15 Score=50.98 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..+|+|.|++|.||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 413
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.70 E-value=0.13 Score=50.84 Aligned_cols=22 Identities=36% Similarity=0.303 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|..|.|||||++.++.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3799999999999999999875
No 414
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.70 E-value=0.2 Score=47.18 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999864
No 415
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.61 E-value=0.17 Score=52.75 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.++|.|+|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999999987
No 416
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.60 E-value=0.2 Score=51.45 Aligned_cols=25 Identities=40% Similarity=0.395 Sum_probs=22.0
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhc
Q 002044 199 NAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 199 ~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
....++.+.|.||+||||++..+..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3568899999999999999999874
No 417
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=89.59 E-value=0.17 Score=53.49 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=21.4
Q ss_pred CCCeEEEEEEecCCchHHHHHHHHhc
Q 002044 198 TNAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 198 ~~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
....++|+|+|-||+||||+|..++.
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCceEEEEECCCCccHHHHHHHHHH
Confidence 34678999999999999999988765
No 418
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.54 E-value=0.16 Score=52.45 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|..|.|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999999976
No 419
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=89.48 E-value=0.18 Score=54.16 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+++|+|..|+||||+++.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 457999999999999999999987
No 420
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.48 E-value=0.29 Score=49.73 Aligned_cols=38 Identities=24% Similarity=0.121 Sum_probs=25.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE 239 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 239 (976)
-.++.|.|.+|+||||+|.+++.+. ....-..++|++.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~ 67 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTL 67 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecc
Confidence 3588999999999999998876421 2222234555543
No 421
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.47 E-value=0.17 Score=50.30 Aligned_cols=21 Identities=43% Similarity=0.436 Sum_probs=19.2
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 422
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.44 E-value=0.16 Score=48.95 Aligned_cols=22 Identities=41% Similarity=0.466 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 002044 203 IISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999873
No 423
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=89.44 E-value=0.91 Score=48.00 Aligned_cols=37 Identities=11% Similarity=0.059 Sum_probs=27.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE 239 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 239 (976)
-.++.|.|.+|+||||+|..++...... . ..++|++.
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~-g-~~vl~~sl 104 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDN-D-DVVNLHSL 104 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTT-T-CEEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc-C-CeEEEEEC
Confidence 4589999999999999999887632211 2 45677664
No 424
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.43 E-value=0.17 Score=52.06 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|..|.|||||.+.++.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999987
No 425
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.33 E-value=0.17 Score=50.71 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999976
No 426
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.33 E-value=0.21 Score=48.51 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
..-.|+|+|..|+|||||++.+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3567899999999999999998764
No 427
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=89.27 E-value=1.7 Score=58.98 Aligned_cols=22 Identities=36% Similarity=0.375 Sum_probs=18.8
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
+-|.++|++|.|||++|+.+..
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~ 1289 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALR 1289 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHh
Confidence 4578999999999999977665
No 428
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.25 E-value=0.18 Score=51.12 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|..|.|||||.+.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 429
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=89.23 E-value=0.31 Score=54.21 Aligned_cols=24 Identities=38% Similarity=0.457 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+++|+|..|+|||||++.++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 457999999999999999999986
No 430
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.21 E-value=0.15 Score=50.44 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|..|.|||||.+.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999987
No 431
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.21 E-value=0.18 Score=51.72 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|..|.|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 432
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.19 E-value=0.18 Score=51.76 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|..|.|||||++.++.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 5899999999999999999987
No 433
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=89.16 E-value=0.7 Score=52.64 Aligned_cols=38 Identities=11% Similarity=-0.070 Sum_probs=27.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchhcc-cccceeehH
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVISN-FEKRMWNCE 239 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~ 239 (976)
.-.++.|.|.+|+||||+|..++.+ .... =..++|++.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~--~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQ--WGTAMGKKVGLAML 279 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHH--HTTTSCCCEEEEES
T ss_pred CCeEEEEeecCCCCchHHHHHHHHH--HHHhcCCcEEEEec
Confidence 3458899999999999999988873 3222 234667665
No 434
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.16 E-value=0.18 Score=51.93 Aligned_cols=22 Identities=27% Similarity=0.638 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|..|.|||||++.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999987
No 435
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.08 E-value=0.21 Score=52.94 Aligned_cols=24 Identities=42% Similarity=0.506 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..++|+|+|.+|+||||++..++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999998876
No 436
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.06 E-value=0.21 Score=46.61 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
+-|.|+|.+|+|||||++.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 437
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.99 E-value=0.19 Score=51.21 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|..|.|||||++.++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 438
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.97 E-value=0.19 Score=49.42 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=19.2
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
+|.|.|++|+||||.|+.+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999887
No 439
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.92 E-value=0.19 Score=51.31 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|..|.|||||.+.++.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999987
No 440
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.92 E-value=0.23 Score=51.67 Aligned_cols=24 Identities=33% Similarity=0.246 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..++|.|+|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 457899999999999999999987
No 441
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=88.91 E-value=0.18 Score=50.84 Aligned_cols=23 Identities=30% Similarity=0.163 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...|.|.|+.|+||||+|+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 442
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.88 E-value=0.19 Score=52.91 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999886
No 443
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=88.86 E-value=0.41 Score=52.74 Aligned_cols=34 Identities=29% Similarity=0.240 Sum_probs=25.2
Q ss_pred HHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhc
Q 002044 185 ALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 185 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
++++.|..-. .-.-++|.|.+|+|||+|+.++.+
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~ 175 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELIN 175 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHH
Confidence 4555555322 234679999999999999999887
No 444
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.81 E-value=0.2 Score=51.62 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|..|.|||||++.++.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 445
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.60 E-value=0.21 Score=50.79 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|..|.|||||.+.++.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999987
No 446
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.51 E-value=0.19 Score=49.12 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhcc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999874
No 447
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.47 E-value=0.27 Score=47.34 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
....|+|+|.+|+|||||.+.+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999874
No 448
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.46 E-value=0.21 Score=55.38 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+|.|+|++|+||||+|+.+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999987
No 449
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.45 E-value=0.23 Score=49.92 Aligned_cols=25 Identities=24% Similarity=0.161 Sum_probs=22.4
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhc
Q 002044 199 NAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 199 ~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
....+|+|.|..|+||||+++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3557999999999999999999887
No 450
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=88.40 E-value=0.47 Score=50.62 Aligned_cols=35 Identities=23% Similarity=0.026 Sum_probs=26.6
Q ss_pred HHHHHHHhcccccCCCCeEEEEEEecCCchHHHHHHHHhc
Q 002044 184 NALKSKLLCKSSEQTNAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 184 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-++++.+..-. .-.-++|+|.+|+|||+|+.++.+
T Consensus 163 iraID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~ 197 (427)
T 3l0o_A 163 TRLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIAN 197 (427)
T ss_dssp HHHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHH
T ss_pred chhhhhccccc-----CCceEEEecCCCCChhHHHHHHHH
Confidence 45667766422 234679999999999999999988
No 451
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.40 E-value=0.22 Score=50.85 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|..|.|||||.+.++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 452
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.40 E-value=0.11 Score=54.28 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=18.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+|+|.|..|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999876
No 453
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.34 E-value=0.22 Score=51.30 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|..|.|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999986
No 454
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.33 E-value=0.22 Score=51.62 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|..|.|||||.+.++.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999987
No 455
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.31 E-value=0.25 Score=47.57 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
+.|.|.|..|+||||||.++..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 456
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.27 E-value=0.22 Score=50.40 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=22.1
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhc
Q 002044 199 NAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 199 ~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
....+|+|.|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3556899999999999999999886
No 457
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=88.20 E-value=0.81 Score=51.11 Aligned_cols=38 Identities=11% Similarity=-0.065 Sum_probs=26.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE 239 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 239 (976)
-.++.|.|.+|+||||+|..++...... +=..++|++.
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~sl 237 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSL 237 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEEC
Confidence 3588999999999999999888732211 1234666654
No 458
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.17 E-value=0.23 Score=50.27 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.++.|+|.+|+|||||+..++.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 35899999999999999999876
No 459
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=88.11 E-value=0.26 Score=54.60 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..++|.++|.+|+||||++..++.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999988875
No 460
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=88.08 E-value=0.26 Score=54.56 Aligned_cols=24 Identities=42% Similarity=0.465 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..++|+|+|.+|+||||+|..++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999988876
No 461
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=87.97 E-value=0.65 Score=53.56 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
+++.|.|.+|.||||++..+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~ 226 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVAD 226 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5888999999999999998876
No 462
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=87.94 E-value=0.58 Score=53.58 Aligned_cols=23 Identities=35% Similarity=0.326 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|.|..|+|||||++.++.
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g 303 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVE 303 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 35899999999999999999886
No 463
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.93 E-value=0.24 Score=46.26 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 002044 203 IISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999764
No 464
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=87.89 E-value=0.25 Score=51.93 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|.+|+|||||++.++.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 35899999999999999999887
No 465
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.84 E-value=0.25 Score=51.66 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.-.+++|+|..|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 345899999999999999999886
No 466
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=87.82 E-value=0.73 Score=53.64 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
-.+++|+|..|.|||||++.+..
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999965
No 467
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=87.74 E-value=0.48 Score=53.35 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=21.0
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhc
Q 002044 199 NAVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 199 ~~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...++|+|+|.+|+||||++..++.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999988875
No 468
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=87.71 E-value=0.28 Score=51.31 Aligned_cols=23 Identities=39% Similarity=0.342 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.++++|+|.+|+||||++..++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 469
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=87.70 E-value=0.33 Score=46.21 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
....|+|+|.+|+|||||+..+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999764
No 470
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=87.67 E-value=0.27 Score=50.72 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002044 203 IISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999987
No 471
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.64 E-value=0.27 Score=51.19 Aligned_cols=22 Identities=36% Similarity=0.406 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.++.|+|.+|+|||||+..++.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999886
No 472
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=87.61 E-value=0.28 Score=52.11 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=22.4
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++++|+|+.|.|||||.+.+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~ 26 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILN 26 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHH
T ss_pred cccEEEEEecCCCCHHHHHHHHHh
Confidence 578999999999999999999986
No 473
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=87.59 E-value=0.58 Score=56.74 Aligned_cols=111 Identities=14% Similarity=0.136 Sum_probs=53.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccch--hccc-c---------cceeehHHHHHHHhCCCCCcccHHHHHHHHHHHH-
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDV--ISNF-E---------KRMWNCESIIEALEGFAPNLGELNSLLLRIDAFI- 266 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~f-~---------~~~wv~~~~~~~l~~~~~~~~~~~~~~~~l~~~l- 266 (976)
.-.+++|.|+.|.||||+.+.+..-... ...| + ..++..+...+.+.. ...........+...+
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~---~~stfs~em~~~~~il~ 748 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYK---GRSTFMEELTDTAEIIR 748 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC-------------CCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHH---hHHHhhHHHHHHHHHHH
Confidence 4579999999999999999987531000 0001 0 001111111111111 1111111112222222
Q ss_pred -cCCceEEEEcCCCCC-CccCcHhH----HHhhcCCCCCcEEEEEcCchhhhhc
Q 002044 267 -ARKKFLLILDDVWTD-DYSKWEPF----RRCLINGHRESRILVTTRKETVARM 314 (976)
Q Consensus 267 -~~k~~LlVlDdv~~~-~~~~~~~l----~~~l~~~~~gs~iivTtR~~~v~~~ 314 (976)
..++-|++||..... |...-..+ ...+. ...|+.||++|.+..++..
T Consensus 749 ~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~-~~~g~tvl~vTH~~el~~l 801 (918)
T 3thx_B 749 KATSQSLVILDELGRGTSTHDGIAIAYATLEYFI-RDVKSLTLFVTHYPPVCEL 801 (918)
T ss_dssp HCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHH-HTTCCEEEEECSCGGGGGH
T ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-HhcCCeEEEEeCcHHHHHH
Confidence 567889999998542 11111122 22222 1357899999999777654
No 474
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=87.58 E-value=0.27 Score=46.70 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999864
No 475
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=87.43 E-value=0.7 Score=56.21 Aligned_cols=111 Identities=11% Similarity=0.024 Sum_probs=55.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcc----------cchh---cccccceeehHHHHHHHhCCCCCcccHHHHHHHHHHHH
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYND----------EDVI---SNFEKRMWNCESIIEALEGFAPNLGELNSLLLRIDAFI 266 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~----------~~~~---~~f~~~~wv~~~~~~~l~~~~~~~~~~~~~~~~l~~~l 266 (976)
.-.+++|+|+.|.||||+.+.+.-- +... ..|+ .++..+...+.+. ............+...+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d-~i~~~ig~~d~l~---~~lStf~~e~~~~a~il 736 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVD-CILARVGAGDSQL---KGVSTFMAEMLETASIL 736 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCS-EEEEECC------------CHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHH-HHHHhcCchhhHH---HhHhhhHHHHHHHHHHH
Confidence 3579999999999999999998210 0000 0111 0111111111110 11111222223333344
Q ss_pred --cCCceEEEEcCCCCC-CccCcHhH----HHhhcCCCCCcEEEEEcCchhhhhcc
Q 002044 267 --ARKKFLLILDDVWTD-DYSKWEPF----RRCLINGHRESRILVTTRKETVARMM 315 (976)
Q Consensus 267 --~~k~~LlVlDdv~~~-~~~~~~~l----~~~l~~~~~gs~iivTtR~~~v~~~~ 315 (976)
..++-|++||..-.. +...-..+ ...+.. ..|+.||++|.+..++..+
T Consensus 737 ~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~-~~g~~vl~aTH~~el~~la 791 (934)
T 3thx_A 737 RSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIAT-KIGAFCMFATHFHELTALA 791 (934)
T ss_dssp HHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHH-TTCCEEEEEESCGGGGGGG
T ss_pred HhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCCEEEEEcCcHHHHHHh
Confidence 577899999998542 11111122 223322 2478999999998776543
No 476
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=87.34 E-value=0.58 Score=49.67 Aligned_cols=37 Identities=11% Similarity=-0.006 Sum_probs=26.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE 239 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 239 (976)
-.++.|.|.+|+||||+|..++.. ...+=..++|++.
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~--~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLS--ALNDDRGVAVFSL 82 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHH--HHHTTCEEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEeC
Confidence 358899999999999999998874 2222234566654
No 477
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=87.32 E-value=0.33 Score=47.06 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
....|+|+|.+|+|||||+..+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999864
No 478
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=87.29 E-value=1.3 Score=49.12 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=27.3
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcccchhcccccceeehH
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYNDEDVISNFEKRMWNCE 239 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 239 (976)
.-.++.|.|.+|+||||+|..++.+ ....=..++|++.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~--~a~~g~~vl~fSl 233 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKN--MSDNDDVVNLHSL 233 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHH--HHHTTCEEEEECS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHH--HHHcCCEEEEEEC
Confidence 3458999999999999999988874 2222234666654
No 479
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=87.29 E-value=0.27 Score=46.11 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.2
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 002044 203 IISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
-|+|+|.+|+|||||++.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4689999999999999998753
No 480
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=87.26 E-value=0.38 Score=45.52 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhcc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
.--|+|+|.+|+|||||++.+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456899999999999999998764
No 481
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=87.21 E-value=0.28 Score=50.24 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|..|.|||||.+.++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 3899999999999999999987
No 482
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=87.21 E-value=0.39 Score=52.61 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456999999999999999999987
No 483
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=87.18 E-value=0.32 Score=48.77 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+|+|.|+.|+||||+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 484
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=87.17 E-value=0.32 Score=50.25 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=19.5
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
++|+|.|-||+||||+|..++.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~ 23 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS 23 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHH
Confidence 5788899999999999988775
No 485
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.14 E-value=0.35 Score=45.38 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=21.0
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
..--|.|+|.+|+|||||++.+...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 3445789999999999999998764
No 486
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.13 E-value=0.32 Score=49.29 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...|+|.|..|+||||+++.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36799999999999999999987
No 487
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=87.09 E-value=0.33 Score=50.79 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.++|+|.|-||+||||+|..++.
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH
Confidence 46888899999999999988775
No 488
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=87.09 E-value=0.3 Score=52.76 Aligned_cols=22 Identities=27% Similarity=0.521 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
++|+|.|+.|+||||||..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5899999999999999999986
No 489
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=87.05 E-value=0.27 Score=47.47 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
--|+|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999999764
No 490
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=86.99 E-value=0.25 Score=57.41 Aligned_cols=51 Identities=24% Similarity=0.248 Sum_probs=31.3
Q ss_pred CccccchhHHHHHHHHHhcccccC--C---CCeEEEEEEecCCchHHHHHHHHhcc
Q 002044 174 SEVRGRVEEKNALKSKLLCKSSEQ--T---NAVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 174 ~~~~Gr~~~~~~l~~~L~~~~~~~--~---~~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
+.++|.+..+..+.-.+....... + ..-.-|.++|.+|+|||+||+.+++.
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 456777766555544443221000 0 00014789999999999999999873
No 491
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=86.94 E-value=0.34 Score=53.04 Aligned_cols=22 Identities=14% Similarity=0.161 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 002044 203 IISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 203 vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
-++|.|.+|+|||+|+.++++.
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~ 174 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQ 174 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHH
Confidence 4689999999999999999884
No 492
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=86.88 E-value=0.67 Score=50.05 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
+.++|+|+|.+|+|||||.+.+...
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCC
Confidence 5678999999999999999999874
No 493
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=86.79 E-value=0.31 Score=45.92 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
--|+|+|.+|+|||||++.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999763
No 494
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=86.71 E-value=0.41 Score=45.85 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
....|+|+|.+|+|||||.+.+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999874
No 495
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.70 E-value=0.3 Score=52.88 Aligned_cols=24 Identities=29% Similarity=0.162 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
...+++|+|+.|.|||||++.++.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456999999999999999999986
No 496
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=86.70 E-value=0.31 Score=46.81 Aligned_cols=25 Identities=32% Similarity=0.295 Sum_probs=21.0
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
..--|+|+|.+|+|||||++.+.+.
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999998764
No 497
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=86.67 E-value=0.3 Score=53.77 Aligned_cols=24 Identities=46% Similarity=0.379 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHhc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
..++|.++|.+|+||||++..++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988876
No 498
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=86.63 E-value=0.31 Score=45.66 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=20.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhcc
Q 002044 201 VQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 201 ~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
..-|+|+|.+|+|||||+..+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999998764
No 499
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=86.54 E-value=1.3 Score=43.55 Aligned_cols=25 Identities=24% Similarity=0.289 Sum_probs=21.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHhcc
Q 002044 200 AVQIISLVGMGGIGKTTLAQFAYND 224 (976)
Q Consensus 200 ~~~vv~I~G~gGiGKTtLa~~v~~~ 224 (976)
..--|+|+|.+|+|||||+..+...
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcC
Confidence 3456789999999999999998864
No 500
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=86.50 E-value=0.33 Score=50.50 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002044 202 QIISLVGMGGIGKTTLAQFAYN 223 (976)
Q Consensus 202 ~vv~I~G~gGiGKTtLa~~v~~ 223 (976)
.+++|+|..|.|||||.+.++.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999976
Done!