Query 002045
Match_columns 976
No_of_seqs 864 out of 5350
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 15:16:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002045.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002045hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733 Nuclear AAA ATPase (VC 100.0 8E-87 1.7E-91 737.4 36.0 525 374-931 185-781 (802)
2 KOG0730 AAA+-type ATPase [Post 100.0 1.3E-76 2.9E-81 668.3 33.6 499 374-934 180-689 (693)
3 KOG0732 AAA+-type ATPase conta 100.0 1.4E-67 3.1E-72 627.5 35.1 666 289-975 175-847 (1080)
4 TIGR01243 CDC48 AAA family ATP 100.0 1.6E-62 3.4E-67 605.1 38.9 489 374-898 173-675 (733)
5 KOG0736 Peroxisome assembly fa 100.0 7.7E-57 1.7E-61 510.8 31.1 507 380-931 402-944 (953)
6 KOG0735 AAA+-type ATPase [Post 100.0 8.4E-56 1.8E-60 497.4 34.6 463 379-898 408-888 (952)
7 COG0464 SpoVK ATPases of the A 100.0 2.6E-49 5.6E-54 469.2 34.4 455 397-899 2-466 (494)
8 COG1222 RPT1 ATP-dependent 26S 100.0 2.5E-48 5.3E-53 411.5 23.2 248 372-641 144-394 (406)
9 KOG0733 Nuclear AAA ATPase (VC 100.0 1.5E-47 3.3E-52 425.2 23.8 287 347-643 483-773 (802)
10 KOG0741 AAA+-type ATPase [Post 100.0 8.7E-47 1.9E-51 412.5 21.8 441 372-843 212-683 (744)
11 KOG0730 AAA+-type ATPase [Post 100.0 1.9E-46 4.2E-51 424.0 21.7 269 350-642 409-677 (693)
12 KOG0736 Peroxisome assembly fa 100.0 9.3E-43 2E-47 396.3 23.0 285 347-644 646-937 (953)
13 KOG0738 AAA+-type ATPase [Post 100.0 7.9E-42 1.7E-46 363.1 19.1 266 370-644 203-474 (491)
14 KOG0734 AAA+-type ATPase conta 100.0 2.7E-40 5.9E-45 362.0 18.9 244 374-640 299-542 (752)
15 KOG0727 26S proteasome regulat 100.0 3.8E-38 8.2E-43 316.7 20.1 244 374-639 150-396 (408)
16 COG1222 RPT1 ATP-dependent 26S 100.0 1.6E-38 3.4E-43 337.0 15.9 222 648-899 142-376 (406)
17 KOG0726 26S proteasome regulat 100.0 1.3E-38 2.8E-43 326.1 14.2 246 373-640 179-427 (440)
18 KOG0728 26S proteasome regulat 100.0 1E-37 2.2E-42 313.2 20.4 245 374-640 142-389 (404)
19 KOG0731 AAA+-type ATPase conta 100.0 6.9E-38 1.5E-42 366.1 21.6 247 373-641 305-555 (774)
20 KOG0739 AAA+-type ATPase [Post 100.0 2.2E-38 4.9E-43 325.4 14.2 227 374-608 128-355 (439)
21 KOG0735 AAA+-type ATPase [Post 100.0 3.4E-37 7.3E-42 347.6 22.7 230 374-609 662-891 (952)
22 KOG0729 26S proteasome regulat 100.0 1.7E-37 3.7E-42 314.1 17.2 247 372-640 170-419 (435)
23 KOG0652 26S proteasome regulat 100.0 4E-37 8.7E-42 310.6 17.1 245 374-640 166-413 (424)
24 CHL00195 ycf46 Ycf46; Provisio 100.0 3.2E-35 6.9E-40 340.2 24.6 353 478-898 82-447 (489)
25 COG1223 Predicted ATPase (AAA+ 100.0 2.4E-35 5.1E-40 298.3 17.6 239 374-640 116-356 (368)
26 PTZ00454 26S protease regulato 100.0 6.2E-35 1.3E-39 331.5 23.0 247 373-641 139-388 (398)
27 KOG0737 AAA+-type ATPase [Post 100.0 3.4E-35 7.3E-40 314.1 16.7 228 374-609 87-317 (386)
28 COG0464 SpoVK ATPases of the A 100.0 4.1E-34 8.9E-39 339.4 23.5 253 371-643 234-487 (494)
29 COG0465 HflB ATP-dependent Zn 100.0 1.1E-34 2.4E-39 334.8 17.8 246 374-642 145-393 (596)
30 TIGR01243 CDC48 AAA family ATP 100.0 4.7E-34 1E-38 352.5 23.8 285 349-643 427-714 (733)
31 PRK03992 proteasome-activating 100.0 1.4E-33 3.1E-38 322.4 22.6 253 372-646 124-379 (389)
32 PTZ00361 26 proteosome regulat 100.0 2.4E-33 5.2E-38 320.0 20.1 246 373-640 177-425 (438)
33 CHL00195 ycf46 Ycf46; Provisio 100.0 8.6E-33 1.9E-37 320.1 23.3 244 374-644 223-468 (489)
34 TIGR02639 ClpA ATP-dependent C 100.0 3E-31 6.5E-36 326.4 31.8 421 375-849 178-665 (731)
35 KOG0738 AAA+-type ATPase [Post 100.0 3.9E-33 8.4E-38 297.1 10.9 223 645-898 200-435 (491)
36 TIGR03689 pup_AAA proteasome A 100.0 2.7E-31 5.9E-36 306.6 22.9 228 372-605 175-412 (512)
37 TIGR01241 FtsH_fam ATP-depende 100.0 2E-31 4.4E-36 315.2 21.4 246 373-641 49-297 (495)
38 TIGR01242 26Sp45 26S proteasom 100.0 9E-31 1.9E-35 298.4 22.4 245 373-639 116-363 (364)
39 PRK11034 clpA ATP-dependent Cl 100.0 1.4E-29 3.1E-34 306.8 32.4 420 376-850 183-670 (758)
40 KOG0740 AAA+-type ATPase [Post 100.0 3.5E-31 7.6E-36 294.2 16.3 259 374-643 148-408 (428)
41 KOG0651 26S proteasome regulat 100.0 1.9E-31 4.1E-36 277.0 11.9 228 374-607 127-357 (388)
42 KOG0732 AAA+-type ATPase conta 100.0 2.9E-31 6.3E-36 317.7 15.2 298 651-976 259-600 (1080)
43 CHL00176 ftsH cell division pr 100.0 1.6E-30 3.4E-35 310.2 21.2 245 373-640 177-424 (638)
44 KOG0737 AAA+-type ATPase [Post 100.0 2.8E-30 6E-35 276.5 13.5 219 652-899 87-315 (386)
45 KOG0739 AAA+-type ATPase [Post 100.0 5.2E-31 1.1E-35 271.3 5.5 226 645-900 121-355 (439)
46 KOG0728 26S proteasome regulat 100.0 4.8E-30 1E-34 258.1 11.9 218 651-898 141-371 (404)
47 KOG0734 AAA+-type ATPase conta 100.0 1.4E-29 3E-34 278.2 16.7 213 652-898 299-524 (752)
48 KOG0652 26S proteasome regulat 100.0 5.2E-30 1.1E-34 259.2 11.9 219 650-898 164-395 (424)
49 KOG0727 26S proteasome regulat 100.0 1.1E-29 2.3E-34 255.9 13.3 223 650-902 148-383 (408)
50 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.9E-29 4.1E-34 312.6 18.4 216 400-642 1617-1880(2281)
51 KOG0726 26S proteasome regulat 100.0 6.8E-30 1.5E-34 262.2 10.0 224 650-903 178-414 (440)
52 TIGR03345 VI_ClpV1 type VI sec 100.0 2.2E-27 4.8E-32 293.5 30.9 191 375-588 183-390 (852)
53 PRK10733 hflB ATP-dependent me 100.0 2.7E-28 5.8E-33 294.9 20.9 245 374-641 147-394 (644)
54 PLN00020 ribulose bisphosphate 100.0 7.5E-28 1.6E-32 260.6 20.4 220 375-605 111-353 (413)
55 COG1223 Predicted ATPase (AAA+ 100.0 9.3E-29 2E-33 250.6 11.5 211 651-898 115-338 (368)
56 CHL00095 clpC Clp protease ATP 100.0 1.9E-26 4.2E-31 287.0 34.2 433 376-850 176-736 (821)
57 KOG0729 26S proteasome regulat 100.0 4.3E-29 9.4E-34 253.2 8.3 221 648-898 168-401 (435)
58 COG0542 clpA ATP-binding subun 100.0 1.1E-26 2.3E-31 274.8 26.8 434 375-851 166-710 (786)
59 KOG0731 AAA+-type ATPase conta 99.9 1.1E-27 2.4E-32 280.8 14.0 217 651-898 305-536 (774)
60 TIGR03346 chaperone_ClpB ATP-d 99.9 4E-25 8.6E-30 275.9 33.8 191 375-588 169-376 (852)
61 PRK10865 protein disaggregatio 99.9 3.2E-25 7E-30 275.3 28.6 189 376-587 175-380 (857)
62 PTZ00454 26S protease regulato 99.9 1.8E-26 3.9E-31 262.4 15.2 219 650-898 138-369 (398)
63 KOG0741 AAA+-type ATPase [Post 99.9 6.5E-27 1.4E-31 257.1 8.3 222 651-898 213-458 (744)
64 PRK03992 proteasome-activating 99.9 9.5E-26 2.1E-30 258.1 16.3 221 648-898 122-355 (389)
65 COG0465 HflB ATP-dependent Zn 99.9 1.8E-25 3.9E-30 258.6 15.6 216 652-898 145-373 (596)
66 PTZ00361 26 proteosome regulat 99.9 2.9E-25 6.2E-30 253.8 15.2 218 651-898 177-407 (438)
67 KOG0740 AAA+-type ATPase [Post 99.9 1.2E-25 2.5E-30 250.3 11.3 224 648-901 144-377 (428)
68 PLN00020 ribulose bisphosphate 99.9 1.5E-24 3.3E-29 235.0 13.9 182 701-898 146-354 (413)
69 KOG0651 26S proteasome regulat 99.9 2.8E-25 6.1E-30 231.2 6.8 220 652-901 127-359 (388)
70 CHL00206 ycf2 Ycf2; Provisiona 99.9 2.6E-24 5.6E-29 267.5 12.4 183 701-898 1628-1860(2281)
71 TIGR01241 FtsH_fam ATP-depende 99.9 6.2E-24 1.3E-28 251.5 14.5 217 651-898 49-278 (495)
72 TIGR03689 pup_AAA proteasome A 99.9 8.4E-24 1.8E-28 244.6 15.1 182 650-847 175-379 (512)
73 TIGR01242 26Sp45 26S proteasom 99.9 2.7E-23 5.9E-28 237.0 16.0 219 650-898 115-346 (364)
74 CHL00176 ftsH cell division pr 99.9 1E-22 2.2E-27 243.4 15.3 217 651-898 177-406 (638)
75 CHL00181 cbbX CbbX; Provisiona 99.9 3.5E-21 7.6E-26 210.9 20.5 221 379-609 23-260 (287)
76 TIGR02881 spore_V_K stage V sp 99.9 2.6E-21 5.7E-26 210.6 18.6 220 378-608 5-243 (261)
77 TIGR02880 cbbX_cfxQ probable R 99.9 5.2E-21 1.1E-25 209.8 20.3 219 380-608 23-258 (284)
78 PRK10733 hflB ATP-dependent me 99.8 3.3E-21 7.2E-26 233.4 14.4 214 654-898 149-375 (644)
79 PF05496 RuvB_N: Holliday junc 99.8 9E-19 1.9E-23 179.3 15.1 189 374-597 19-223 (233)
80 KOG0743 AAA+-type ATPase [Post 99.8 7.7E-19 1.7E-23 194.1 14.4 206 374-595 196-412 (457)
81 cd05508 Bromo_RACK7 Bromodomai 99.8 2.4E-19 5.3E-24 162.9 7.0 79 897-976 2-80 (99)
82 KOG0744 AAA+-type ATPase [Post 99.8 8.6E-19 1.9E-23 183.8 11.5 188 378-567 141-342 (423)
83 cd05528 Bromo_AAA Bromodomain; 99.8 3.1E-19 6.7E-24 166.2 7.1 81 896-976 1-81 (112)
84 cd05497 Bromo_Brdt_I_like Brom 99.8 5.8E-19 1.3E-23 163.3 7.6 80 897-976 4-85 (107)
85 PF00004 AAA: ATPase family as 99.8 2E-18 4.2E-23 167.5 11.6 130 416-551 1-132 (132)
86 cd05513 Bromo_brd7_like Bromod 99.8 1.1E-18 2.3E-23 158.4 7.5 78 899-976 2-79 (98)
87 KOG0742 AAA+-type ATPase [Post 99.8 8.5E-18 1.8E-22 180.6 15.5 211 375-600 351-589 (630)
88 cd05505 Bromo_WSTF_like Bromod 99.7 1.4E-18 3.1E-23 157.6 6.8 73 904-976 6-78 (97)
89 cd05507 Bromo_brd8_like Bromod 99.7 1.8E-18 3.9E-23 159.6 7.5 78 899-976 4-81 (104)
90 cd05495 Bromo_cbp_like Bromodo 99.7 2.6E-18 5.6E-23 159.4 7.7 79 898-976 3-84 (108)
91 cd05512 Bromo_brd1_like Bromod 99.7 2.5E-18 5.3E-23 156.5 7.3 78 899-976 2-79 (98)
92 cd05496 Bromo_WDR9_II Bromodom 99.7 2.3E-18 5E-23 161.6 7.1 79 898-976 5-83 (119)
93 cd05510 Bromo_SPT7_like Bromod 99.7 3.1E-18 6.7E-23 159.4 7.3 78 899-976 8-86 (112)
94 COG2255 RuvB Holliday junction 99.7 1.4E-16 3E-21 165.6 16.4 191 375-600 22-228 (332)
95 cd05503 Bromo_BAZ2A_B_like Bro 99.7 2E-17 4.2E-22 151.0 7.0 74 903-976 5-78 (97)
96 cd05501 Bromo_SP100C_like Brom 99.7 2.8E-17 6E-22 148.9 7.4 76 898-976 3-78 (102)
97 cd05511 Bromo_TFIID Bromodomai 99.7 2.5E-17 5.5E-22 153.9 6.8 77 900-976 2-78 (112)
98 cd05504 Bromo_Acf1_like Bromod 99.7 3E-17 6.4E-22 154.0 7.2 74 903-976 17-90 (115)
99 COG2256 MGS1 ATPase related to 99.7 3.9E-16 8.5E-21 169.8 16.7 178 374-598 19-212 (436)
100 cd05509 Bromo_gcn5_like Bromod 99.7 5.1E-17 1.1E-21 149.9 7.1 77 900-976 3-79 (101)
101 PF00004 AAA: ATPase family as 99.7 1.3E-16 2.8E-21 154.7 9.9 121 706-831 1-131 (132)
102 TIGR00635 ruvB Holliday juncti 99.7 1.2E-15 2.5E-20 170.5 18.8 193 377-604 2-210 (305)
103 PRK00080 ruvB Holliday junctio 99.7 1.5E-15 3.2E-20 171.2 19.2 196 375-605 21-232 (328)
104 PRK14956 DNA polymerase III su 99.7 2.1E-15 4.5E-20 172.5 18.7 192 374-600 13-227 (484)
105 KOG1051 Chaperone HSP104 and r 99.7 1E-14 2.2E-19 175.9 25.3 167 378-567 185-365 (898)
106 cd05500 Bromo_BDF1_2_I Bromodo 99.7 2E-16 4.2E-21 146.2 7.6 77 900-976 6-84 (103)
107 cd05516 Bromo_SNF2L2 Bromodoma 99.7 1.3E-16 2.9E-21 147.9 6.5 64 913-976 22-85 (107)
108 cd05506 Bromo_plant1 Bromodoma 99.6 2.7E-16 5.8E-21 144.6 7.2 75 902-976 4-80 (99)
109 PRK07003 DNA polymerase III su 99.6 4.7E-15 1E-19 175.0 18.8 192 374-600 11-225 (830)
110 cd05499 Bromo_BDF1_2_II Bromod 99.6 3.3E-16 7.2E-21 144.5 7.2 72 905-976 7-83 (102)
111 KOG0742 AAA+-type ATPase [Post 99.6 1.1E-15 2.3E-20 164.6 11.8 142 704-851 385-533 (630)
112 PRK12323 DNA polymerase III su 99.6 3.6E-15 7.7E-20 174.1 17.1 196 374-600 11-230 (700)
113 KOG1474 Transcription initiati 99.6 1.6E-16 3.5E-21 191.1 6.1 82 894-976 219-302 (640)
114 KOG0744 AAA+-type ATPase [Post 99.6 5.5E-16 1.2E-20 162.9 9.2 143 705-851 179-345 (423)
115 cd05502 Bromo_tif1_like Bromod 99.6 4.1E-16 8.8E-21 145.6 7.0 72 904-976 10-84 (109)
116 cd05498 Bromo_Brdt_II_like Bro 99.6 5.1E-16 1.1E-20 143.5 7.1 73 904-976 6-83 (102)
117 TIGR00763 lon ATP-dependent pr 99.6 3.6E-15 7.8E-20 185.3 16.7 201 380-603 321-554 (775)
118 cd05515 Bromo_polybromo_V Brom 99.6 8.4E-16 1.8E-20 142.2 8.3 65 912-976 20-84 (105)
119 cd05519 Bromo_SNF2 Bromodomain 99.6 5.2E-16 1.1E-20 143.3 6.7 65 912-976 20-84 (103)
120 cd05517 Bromo_polybromo_II Bro 99.6 8.7E-16 1.9E-20 141.2 8.0 66 911-976 19-84 (103)
121 PRK00149 dnaA chromosomal repl 99.6 2.6E-14 5.6E-19 167.8 21.8 211 371-605 114-332 (450)
122 KOG0989 Replication factor C, 99.6 8.3E-15 1.8E-19 154.1 15.4 186 369-586 26-222 (346)
123 cd05529 Bromo_WDR9_I_like Brom 99.6 1E-15 2.2E-20 146.5 7.8 65 912-976 41-106 (128)
124 PRK14949 DNA polymerase III su 99.6 1.5E-14 3.2E-19 174.0 19.5 192 374-600 11-225 (944)
125 cd05520 Bromo_polybromo_III Br 99.6 1.2E-15 2.5E-20 140.3 7.8 65 912-976 20-84 (103)
126 cd05518 Bromo_polybromo_IV Bro 99.6 1.4E-15 3E-20 139.7 8.1 66 911-976 19-84 (103)
127 PLN03025 replication factor C 99.6 2.8E-14 6.1E-19 160.0 19.3 178 374-586 8-192 (319)
128 cd05525 Bromo_ASH1 Bromodomain 99.6 1.2E-15 2.6E-20 140.8 6.6 64 913-976 23-86 (106)
129 PRK14960 DNA polymerase III su 99.6 2.2E-14 4.7E-19 168.0 18.6 192 374-600 10-224 (702)
130 PRK06893 DNA replication initi 99.6 3.3E-14 7.2E-19 151.6 18.6 199 369-600 6-208 (229)
131 PRK14962 DNA polymerase III su 99.6 2.5E-14 5.3E-19 166.7 18.9 190 374-598 9-221 (472)
132 TIGR02881 spore_V_K stage V sp 99.6 3.5E-15 7.6E-20 162.5 10.8 139 704-848 43-193 (261)
133 PRK08084 DNA replication initi 99.6 8.1E-14 1.8E-18 149.2 20.3 195 369-600 12-214 (235)
134 PRK07994 DNA polymerase III su 99.6 5E-14 1.1E-18 167.7 19.9 192 374-600 11-225 (647)
135 TIGR00362 DnaA chromosomal rep 99.6 5.9E-14 1.3E-18 162.8 20.0 209 372-605 103-320 (405)
136 TIGR02880 cbbX_cfxQ probable R 99.6 6.9E-15 1.5E-19 161.5 11.1 137 704-848 59-210 (284)
137 TIGR02902 spore_lonB ATP-depen 99.6 2.2E-14 4.7E-19 170.5 15.9 216 374-637 60-330 (531)
138 PRK14964 DNA polymerase III su 99.6 4.4E-14 9.4E-19 163.7 17.9 193 374-601 8-223 (491)
139 PRK08691 DNA polymerase III su 99.6 6.2E-14 1.3E-18 165.9 19.0 193 374-601 11-226 (709)
140 PRK14961 DNA polymerase III su 99.6 6.5E-14 1.4E-18 159.6 18.6 192 374-600 11-225 (363)
141 PRK14958 DNA polymerase III su 99.6 5.5E-14 1.2E-18 165.4 18.5 192 374-600 11-225 (509)
142 CHL00181 cbbX CbbX; Provisiona 99.6 9.3E-15 2E-19 160.3 11.2 137 704-848 60-211 (287)
143 PRK14088 dnaA chromosomal repl 99.6 8.9E-14 1.9E-18 161.7 19.8 209 372-605 98-315 (440)
144 PRK06645 DNA polymerase III su 99.6 7.4E-14 1.6E-18 163.1 19.1 193 374-601 16-235 (507)
145 PRK14086 dnaA chromosomal repl 99.6 2.7E-13 5.9E-18 159.2 22.8 209 373-605 282-498 (617)
146 smart00297 BROMO bromo domain. 99.6 6.7E-15 1.5E-19 137.7 7.5 80 897-976 6-85 (107)
147 cd05524 Bromo_polybromo_I Brom 99.6 8.9E-15 1.9E-19 136.9 8.2 64 913-976 23-86 (113)
148 PF00439 Bromodomain: Bromodom 99.5 6.5E-15 1.4E-19 131.3 6.6 73 904-976 2-74 (84)
149 COG0466 Lon ATP-dependent Lon 99.5 3.7E-13 8E-18 155.9 22.3 208 380-605 324-563 (782)
150 PRK08727 hypothetical protein; 99.5 3.7E-13 8E-18 143.9 20.3 195 369-600 9-209 (233)
151 PRK12402 replication factor C 99.5 2.8E-13 6E-18 153.6 20.5 184 374-586 10-218 (337)
152 cd05522 Bromo_Rsc1_2_II Bromod 99.5 2.2E-14 4.8E-19 132.3 8.7 64 913-976 22-85 (104)
153 PRK14963 DNA polymerase III su 99.5 2.3E-13 5E-18 159.8 19.5 191 374-599 9-221 (504)
154 PRK14952 DNA polymerase III su 99.5 2.3E-13 5E-18 161.4 19.2 192 374-600 8-224 (584)
155 PRK13342 recombination factor 99.5 1.9E-13 4.1E-18 158.6 18.1 182 375-600 8-201 (413)
156 TIGR03420 DnaA_homol_Hda DnaA 99.5 3.8E-13 8.3E-18 143.4 19.0 198 371-605 7-211 (226)
157 PRK07764 DNA polymerase III su 99.5 1.9E-13 4.2E-18 167.9 18.5 196 374-600 10-226 (824)
158 PRK14951 DNA polymerase III su 99.5 2.6E-13 5.6E-18 161.4 18.6 192 374-600 11-230 (618)
159 TIGR02928 orc1/cdc6 family rep 99.5 7.5E-13 1.6E-17 151.8 21.8 230 374-639 10-274 (365)
160 cd05492 Bromo_ZMYND11 Bromodom 99.5 1.7E-14 3.7E-19 132.8 6.6 61 916-976 19-84 (109)
161 PRK05563 DNA polymerase III su 99.5 2.7E-13 5.8E-18 161.8 18.6 192 374-600 11-225 (559)
162 PRK07940 DNA polymerase III su 99.5 2.2E-13 4.8E-18 155.2 17.0 191 377-596 3-215 (394)
163 PF00308 Bac_DnaA: Bacterial d 99.5 5E-13 1.1E-17 141.2 18.5 204 373-601 2-214 (219)
164 PRK14959 DNA polymerase III su 99.5 3.9E-13 8.5E-18 158.7 19.1 192 374-597 11-222 (624)
165 PRK08903 DnaA regulatory inact 99.5 5.2E-13 1.1E-17 142.5 18.5 195 370-606 9-210 (227)
166 PRK05896 DNA polymerase III su 99.5 4.8E-13 1E-17 157.1 19.2 191 374-599 11-224 (605)
167 PRK14957 DNA polymerase III su 99.5 4.8E-13 1E-17 157.2 19.2 192 374-600 11-225 (546)
168 PRK14969 DNA polymerase III su 99.5 3.2E-13 7E-18 160.0 17.5 192 375-601 12-226 (527)
169 PRK04195 replication factor C 99.5 2.4E-13 5.3E-18 160.7 16.4 191 372-600 7-204 (482)
170 cd05521 Bromo_Rsc1_2_I Bromodo 99.5 2.9E-14 6.3E-19 131.5 6.7 63 912-976 21-83 (106)
171 KOG2004 Mitochondrial ATP-depe 99.5 2.3E-13 5E-18 156.3 15.0 211 379-607 411-653 (906)
172 PRK00411 cdc6 cell division co 99.5 1.2E-12 2.6E-17 151.6 21.4 231 374-639 25-282 (394)
173 PRK07133 DNA polymerase III su 99.5 6.6E-13 1.4E-17 158.9 19.0 192 374-600 13-224 (725)
174 KOG2028 ATPase related to the 99.5 3.6E-13 7.7E-18 143.6 14.7 187 414-640 163-369 (554)
175 PRK05342 clpX ATP-dependent pr 99.5 5.5E-13 1.2E-17 152.6 17.4 222 377-607 68-382 (412)
176 PRK14965 DNA polymerase III su 99.5 7.1E-13 1.5E-17 158.9 18.1 192 374-600 11-225 (576)
177 PRK06647 DNA polymerase III su 99.5 8.1E-13 1.8E-17 157.0 18.4 192 374-600 11-225 (563)
178 PTZ00112 origin recognition co 99.5 1.8E-12 4E-17 153.3 20.8 198 377-595 753-978 (1164)
179 PF05673 DUF815: Protein of un 99.5 2.8E-12 6.2E-17 133.6 19.2 202 367-598 15-244 (249)
180 TIGR02397 dnaX_nterm DNA polym 99.5 1.1E-12 2.3E-17 150.0 17.7 192 374-600 9-223 (355)
181 PRK06305 DNA polymerase III su 99.5 1.4E-12 3E-17 151.9 18.9 193 375-598 13-225 (451)
182 PRK08451 DNA polymerase III su 99.5 1.4E-12 3.1E-17 152.5 18.9 193 374-601 9-224 (535)
183 cd04369 Bromodomain Bromodomai 99.5 7.4E-14 1.6E-18 128.3 6.4 73 904-976 6-80 (99)
184 PRK05642 DNA replication initi 99.5 5E-12 1.1E-16 135.2 21.4 204 369-605 9-218 (234)
185 PRK14953 DNA polymerase III su 99.5 1.4E-12 3E-17 152.9 18.2 192 374-600 11-225 (486)
186 PRK12422 chromosomal replicati 99.5 1.8E-12 4E-17 150.3 19.0 207 372-600 104-318 (445)
187 PRK13341 recombination factor 99.5 1.6E-12 3.4E-17 158.2 19.2 183 374-600 23-222 (725)
188 PRK09111 DNA polymerase III su 99.4 1.7E-12 3.6E-17 155.0 18.7 192 374-600 19-238 (598)
189 PRK14970 DNA polymerase III su 99.4 1.7E-12 3.7E-17 148.8 18.1 192 374-600 12-214 (367)
190 TIGR00390 hslU ATP-dependent p 99.4 6.3E-13 1.4E-17 148.6 14.0 127 478-606 248-407 (441)
191 PHA02544 44 clamp loader, smal 99.4 2.6E-12 5.6E-17 144.3 18.4 180 372-586 14-201 (316)
192 PRK05201 hslU ATP-dependent pr 99.4 7.1E-13 1.5E-17 148.3 13.2 218 381-605 17-408 (443)
193 PRK00440 rfc replication facto 99.4 4.4E-12 9.5E-17 142.6 19.9 193 374-598 12-206 (319)
194 COG2812 DnaX DNA polymerase II 99.4 7.7E-13 1.7E-17 152.7 13.7 199 374-601 11-226 (515)
195 TIGR00382 clpX endopeptidase C 99.4 1.8E-12 3.8E-17 147.5 16.5 222 377-607 74-388 (413)
196 PRK14955 DNA polymerase III su 99.4 3.1E-12 6.8E-17 147.5 17.3 192 374-600 11-233 (397)
197 PRK10787 DNA-binding ATP-depen 99.4 1.8E-12 4E-17 159.6 16.0 225 380-637 323-580 (784)
198 TIGR00763 lon ATP-dependent pr 99.4 3.7E-13 8E-18 167.5 9.8 138 704-847 348-506 (775)
199 PRK14087 dnaA chromosomal repl 99.4 1.5E-11 3.2E-16 143.4 21.5 206 375-605 111-329 (450)
200 PRK14954 DNA polymerase III su 99.4 8.2E-12 1.8E-16 149.2 19.2 191 374-599 11-232 (620)
201 PRK11034 clpA ATP-dependent Cl 99.4 3.3E-12 7.3E-17 156.0 16.1 202 380-607 459-719 (758)
202 PRK14950 DNA polymerase III su 99.4 7.2E-12 1.6E-16 151.1 18.7 192 374-600 11-226 (585)
203 PRK14948 DNA polymerase III su 99.4 8E-12 1.7E-16 150.2 18.6 190 374-598 11-225 (620)
204 COG0593 DnaA ATPase involved i 99.4 2.3E-11 4.9E-16 136.8 19.2 229 371-641 79-315 (408)
205 COG2256 MGS1 ATPase related to 99.4 2.2E-12 4.8E-17 140.9 10.3 125 704-847 49-177 (436)
206 PRK06620 hypothetical protein; 99.4 1.4E-11 3.1E-16 129.6 16.1 180 370-600 7-194 (214)
207 COG1224 TIP49 DNA helicase TIP 99.3 3.1E-11 6.7E-16 129.3 17.7 114 478-608 292-417 (450)
208 PRK14971 DNA polymerase III su 99.3 3.4E-11 7.4E-16 144.9 19.2 191 375-600 13-227 (614)
209 TIGR02639 ClpA ATP-dependent C 99.3 1.2E-11 2.7E-16 153.1 15.3 202 380-607 455-715 (731)
210 KOG0991 Replication factor C, 99.3 9.3E-12 2E-16 125.7 10.9 193 370-598 18-214 (333)
211 TIGR02903 spore_lon_C ATP-depe 99.3 5.5E-11 1.2E-15 143.7 19.7 228 375-639 150-430 (615)
212 COG0466 Lon ATP-dependent Lon 99.3 5.8E-12 1.2E-16 146.1 9.8 138 704-847 351-509 (782)
213 PF05496 RuvB_N: Holliday junc 99.3 5.3E-12 1.2E-16 129.8 8.5 126 704-846 51-192 (233)
214 KOG2004 Mitochondrial ATP-depe 99.3 6.9E-12 1.5E-16 144.3 9.8 138 704-847 439-597 (906)
215 COG1474 CDC6 Cdc6-related prot 99.3 1.6E-10 3.6E-15 130.5 20.6 210 378-609 16-251 (366)
216 COG0542 clpA ATP-binding subun 99.3 2E-11 4.4E-16 145.9 13.8 238 346-606 458-757 (786)
217 TIGR03345 VI_ClpV1 type VI sec 99.3 2.6E-11 5.7E-16 151.1 15.0 202 379-606 566-833 (852)
218 PRK10865 protein disaggregatio 99.3 6.2E-11 1.3E-15 148.3 16.8 239 345-606 534-831 (857)
219 PRK09087 hypothetical protein; 99.3 6.5E-11 1.4E-15 125.7 14.3 187 369-605 11-205 (226)
220 PF06068 TIP49: TIP49 C-termin 99.2 1E-10 2.3E-15 127.8 15.6 105 478-599 279-395 (398)
221 COG2607 Predicted ATPase (AAA+ 99.2 4.4E-10 9.4E-15 114.9 18.4 204 367-600 48-278 (287)
222 KOG1245 Chromatin remodeling c 99.2 4.8E-12 1E-16 161.2 4.9 74 903-976 1306-1379(1404)
223 KOG0743 AAA+-type ATPase [Post 99.2 2.9E-11 6.2E-16 134.6 10.0 134 701-847 233-384 (457)
224 PRK13407 bchI magnesium chelat 99.2 4.9E-11 1.1E-15 132.8 11.8 166 374-565 3-216 (334)
225 CHL00095 clpC Clp protease ATP 99.2 1.4E-10 3.1E-15 145.4 17.2 205 379-606 509-784 (821)
226 TIGR03346 chaperone_ClpB ATP-d 99.2 3.3E-10 7.1E-15 142.5 19.4 206 379-607 565-829 (852)
227 PRK09112 DNA polymerase III su 99.2 3.3E-10 7.1E-15 127.7 16.9 192 375-597 19-242 (351)
228 cd00009 AAA The AAA+ (ATPases 99.2 2.8E-10 6E-15 111.5 14.2 140 383-550 2-150 (151)
229 TIGR02640 gas_vesic_GvpN gas v 99.2 4.4E-10 9.5E-15 122.4 16.2 133 413-565 21-198 (262)
230 PRK10787 DNA-binding ATP-depen 99.2 5.6E-11 1.2E-15 146.6 9.9 137 704-847 350-507 (784)
231 PRK07471 DNA polymerase III su 99.2 6.1E-10 1.3E-14 126.1 17.5 183 374-588 14-232 (365)
232 KOG1969 DNA replication checkp 99.2 5.8E-10 1.3E-14 129.2 17.2 211 370-606 262-518 (877)
233 PRK05564 DNA polymerase III su 99.2 4.9E-10 1.1E-14 125.6 16.1 177 377-589 2-185 (313)
234 CHL00081 chlI Mg-protoporyphyr 99.2 2.7E-10 6E-15 127.0 13.8 166 374-565 12-232 (350)
235 PRK00080 ruvB Holliday junctio 99.1 1.4E-10 3E-15 130.8 10.3 149 703-877 51-215 (328)
236 KOG0943 Predicted ubiquitin-pr 99.1 6.9E-11 1.5E-15 138.7 7.6 89 55-154 1625-1714(3015)
237 TIGR01650 PD_CobS cobaltochela 99.1 1.4E-10 3E-15 127.2 9.5 137 412-567 63-235 (327)
238 PRK06893 DNA replication initi 99.1 1.5E-10 3.2E-15 123.6 9.3 131 704-847 40-175 (229)
239 PRK04195 replication factor C 99.1 1.1E-10 2.4E-15 138.2 9.2 131 703-848 39-175 (482)
240 TIGR00635 ruvB Holliday juncti 99.1 3.8E-10 8.3E-15 126.1 13.1 149 704-878 31-195 (305)
241 TIGR00390 hslU ATP-dependent p 99.1 1.4E-10 3E-15 130.1 8.9 143 703-849 47-353 (441)
242 TIGR00678 holB DNA polymerase 99.1 6.4E-10 1.4E-14 115.1 13.2 148 411-587 12-184 (188)
243 PRK05201 hslU ATP-dependent pr 99.1 2.4E-10 5.2E-15 128.2 9.9 143 703-850 50-356 (443)
244 TIGR02030 BchI-ChlI magnesium 99.1 6.6E-10 1.4E-14 124.1 13.3 159 377-564 2-218 (337)
245 COG5076 Transcription factor i 99.1 7.2E-11 1.6E-15 134.8 5.7 65 912-976 162-226 (371)
246 COG2255 RuvB Holliday junction 99.1 2.2E-10 4.9E-15 119.8 8.3 131 704-847 53-195 (332)
247 PRK14086 dnaA chromosomal repl 99.1 3.7E-10 8E-15 133.1 11.0 136 705-847 316-460 (617)
248 KOG2028 ATPase related to the 99.1 6.6E-10 1.4E-14 119.1 11.6 126 704-847 163-295 (554)
249 COG5271 MDN1 AAA ATPase contai 99.1 1.1E-08 2.4E-13 125.0 22.9 136 704-847 1544-1704(4600)
250 COG1219 ClpX ATP-dependent pro 99.1 1.3E-09 2.9E-14 115.3 13.1 221 377-606 58-370 (408)
251 TIGR00362 DnaA chromosomal rep 99.1 7.2E-10 1.6E-14 128.8 12.4 135 705-847 138-282 (405)
252 PRK11331 5-methylcytosine-spec 99.1 1.4E-09 3.1E-14 123.6 13.9 146 378-551 174-357 (459)
253 cd05526 Bromo_polybromo_VI Bro 99.1 3.8E-10 8.3E-15 103.6 7.6 59 916-976 27-85 (110)
254 PRK07399 DNA polymerase III su 99.0 1.5E-09 3.3E-14 120.6 13.5 184 377-592 2-219 (314)
255 TIGR03015 pepcterm_ATPase puta 99.0 6.4E-09 1.4E-13 114.0 18.3 182 413-608 43-251 (269)
256 PRK04132 replication factor C 99.0 2.2E-09 4.7E-14 131.5 15.5 154 413-588 564-725 (846)
257 KOG1942 DNA helicase, TBP-inte 99.0 9.1E-09 2E-13 107.4 17.7 112 478-606 297-421 (456)
258 PRK14088 dnaA chromosomal repl 99.0 9E-10 2E-14 128.4 11.5 137 705-847 132-277 (440)
259 PRK08058 DNA polymerase III su 99.0 6.6E-09 1.4E-13 116.9 16.1 152 377-563 3-180 (329)
260 cd05491 Bromo_TBP7_like Bromod 99.0 3.9E-10 8.5E-15 103.4 4.9 43 934-976 60-102 (119)
261 PTZ00112 origin recognition co 99.0 1.6E-09 3.5E-14 128.9 11.3 137 706-847 784-950 (1164)
262 KOG1514 Origin recognition com 99.0 1.6E-08 3.6E-13 117.4 19.1 233 380-640 397-656 (767)
263 PRK05342 clpX ATP-dependent pr 99.0 1.3E-09 2.9E-14 124.9 10.3 106 703-809 108-239 (412)
264 PRK07003 DNA polymerase III su 99.0 6.8E-09 1.5E-13 123.6 16.2 126 705-847 40-192 (830)
265 COG1220 HslU ATP-dependent pro 99.0 2.2E-09 4.8E-14 114.4 10.6 82 479-562 252-346 (444)
266 PRK13342 recombination factor 99.0 2.1E-09 4.6E-14 124.9 11.3 125 704-848 37-166 (413)
267 TIGR02442 Cob-chelat-sub cobal 99.0 2.2E-09 4.9E-14 130.7 11.9 158 377-563 2-212 (633)
268 PRK00411 cdc6 cell division co 99.0 4.6E-09 1E-13 121.8 14.0 142 704-847 56-221 (394)
269 KOG0990 Replication factor C, 99.0 1.5E-09 3.3E-14 115.4 9.0 191 374-600 36-234 (360)
270 PRK00149 dnaA chromosomal repl 99.0 7.4E-10 1.6E-14 130.3 7.3 165 705-889 150-323 (450)
271 TIGR00382 clpX endopeptidase C 99.0 1.7E-09 3.7E-14 123.4 10.0 105 704-809 117-247 (413)
272 COG0470 HolB ATPase involved i 99.0 3.2E-09 7E-14 119.6 12.1 153 380-561 2-177 (325)
273 PRK13531 regulatory ATPase Rav 98.9 6.2E-09 1.3E-13 119.3 13.6 154 381-564 22-193 (498)
274 TIGR02640 gas_vesic_GvpN gas v 98.9 3.2E-09 7E-14 115.7 10.8 133 704-845 22-197 (262)
275 PHA02244 ATPase-like protein 98.9 6.5E-09 1.4E-13 115.3 13.1 123 412-554 118-263 (383)
276 PRK08084 DNA replication initi 98.9 3.1E-09 6.7E-14 113.9 10.1 129 704-847 46-181 (235)
277 TIGR02928 orc1/cdc6 family rep 98.9 6.5E-09 1.4E-13 119.3 13.4 138 704-847 41-213 (365)
278 TIGR02974 phageshock_pspF psp 98.9 5.4E-09 1.2E-13 117.4 12.2 193 381-602 1-232 (329)
279 PRK14956 DNA polymerase III su 98.9 2.3E-09 5E-14 123.3 8.9 126 705-847 42-194 (484)
280 COG3829 RocR Transcriptional r 98.9 6.9E-10 1.5E-14 126.3 4.6 143 704-852 269-436 (560)
281 TIGR00602 rad24 checkpoint pro 98.9 1.3E-08 2.8E-13 121.9 15.6 208 373-604 78-329 (637)
282 KOG2227 Pre-initiation complex 98.9 4E-08 8.6E-13 109.6 18.0 209 380-607 151-383 (529)
283 PRK12422 chromosomal replicati 98.9 1.6E-09 3.5E-14 126.0 7.4 136 705-847 143-285 (445)
284 COG0714 MoxR-like ATPases [Gen 98.9 2.1E-09 4.6E-14 121.3 8.1 145 381-562 26-199 (329)
285 PRK05707 DNA polymerase III su 98.9 1.4E-08 3.1E-13 113.5 14.6 155 411-588 20-197 (328)
286 TIGR02902 spore_lonB ATP-depen 98.9 2.8E-09 6E-14 127.1 9.3 175 704-896 87-313 (531)
287 PRK14962 DNA polymerase III su 98.9 3.7E-09 8E-14 123.6 10.0 127 704-847 37-190 (472)
288 PF07724 AAA_2: AAA domain (Cd 98.9 2E-09 4.3E-14 109.1 6.7 104 704-810 4-130 (171)
289 PRK12323 DNA polymerase III su 98.9 7.3E-09 1.6E-13 121.9 12.2 126 705-847 40-197 (700)
290 KOG0745 Putative ATP-dependent 98.9 1.7E-08 3.7E-13 110.9 14.1 187 413-606 226-511 (564)
291 PF07724 AAA_2: AAA domain (Cd 98.9 5.6E-09 1.2E-13 105.9 9.6 117 412-531 2-131 (171)
292 PF00308 Bac_DnaA: Bacterial d 98.9 9.2E-10 2E-14 116.5 3.9 136 705-847 36-180 (219)
293 PRK14087 dnaA chromosomal repl 98.9 2.6E-09 5.6E-14 124.7 8.1 135 705-847 143-289 (450)
294 TIGR01817 nifA Nif-specific re 98.9 6.1E-09 1.3E-13 125.3 11.1 199 374-601 191-426 (534)
295 PF01078 Mg_chelatase: Magnesi 98.9 8.7E-10 1.9E-14 113.0 3.1 46 378-438 2-47 (206)
296 TIGR03420 DnaA_homol_Hda DnaA 98.9 3.9E-09 8.5E-14 112.5 8.1 128 704-847 39-173 (226)
297 PRK11608 pspF phage shock prot 98.9 1E-08 2.2E-13 115.2 11.7 196 378-602 5-239 (326)
298 PRK14949 DNA polymerase III su 98.9 1.8E-08 4E-13 122.2 14.2 131 705-847 40-192 (944)
299 COG3829 RocR Transcriptional r 98.9 5.6E-09 1.2E-13 119.0 9.0 198 374-601 240-477 (560)
300 TIGR02903 spore_lon_C ATP-depe 98.9 2.8E-08 6.1E-13 120.4 15.5 141 704-847 176-367 (615)
301 PRK05642 DNA replication initi 98.8 6.9E-09 1.5E-13 111.1 9.1 128 704-847 46-180 (234)
302 smart00382 AAA ATPases associa 98.8 1.2E-08 2.7E-13 98.7 9.9 131 413-552 2-147 (148)
303 KOG2035 Replication factor C, 98.8 5.6E-08 1.2E-12 101.4 14.8 185 375-588 9-222 (351)
304 smart00382 AAA ATPases associa 98.8 1.7E-08 3.7E-13 97.8 10.7 106 704-809 3-125 (148)
305 KOG1472 Histone acetyltransfer 98.8 2.7E-09 5.8E-14 125.8 5.9 79 898-976 606-684 (720)
306 PF07728 AAA_5: AAA domain (dy 98.8 7.7E-09 1.7E-13 101.5 8.2 109 415-543 1-139 (139)
307 PRK08727 hypothetical protein; 98.8 9.8E-09 2.1E-13 109.9 9.6 127 705-847 43-176 (233)
308 PRK13341 recombination factor 98.8 9.2E-09 2E-13 125.6 10.3 125 704-848 53-183 (725)
309 PRK14960 DNA polymerase III su 98.8 6.3E-09 1.4E-13 122.7 8.4 145 704-874 38-209 (702)
310 PHA02544 44 clamp loader, smal 98.8 1.2E-08 2.7E-13 114.6 10.5 127 705-849 45-176 (316)
311 PRK07764 DNA polymerase III su 98.8 8.8E-09 1.9E-13 127.2 9.4 127 705-848 39-194 (824)
312 PRK14961 DNA polymerase III su 98.8 1.6E-08 3.4E-13 115.6 10.7 134 705-848 40-193 (363)
313 COG1221 PspF Transcriptional r 98.8 2.7E-08 5.8E-13 112.0 12.2 205 374-605 73-311 (403)
314 PRK15424 propionate catabolism 98.8 2.8E-08 6E-13 117.5 12.9 199 375-601 215-463 (538)
315 PLN03025 replication factor C 98.8 8.4E-09 1.8E-13 115.9 7.9 128 704-848 35-173 (319)
316 COG3604 FhlA Transcriptional r 98.8 1.2E-08 2.7E-13 114.6 9.0 202 375-603 219-456 (550)
317 TIGR02329 propionate_PrpR prop 98.8 2.2E-08 4.9E-13 118.5 11.7 198 375-602 208-449 (526)
318 PRK07940 DNA polymerase III su 98.8 2.4E-08 5.2E-13 114.2 11.5 131 703-843 36-186 (394)
319 PRK14963 DNA polymerase III su 98.8 1.5E-08 3.2E-13 119.6 10.0 127 705-848 38-190 (504)
320 TIGR00764 lon_rel lon-related 98.8 1.1E-07 2.4E-12 114.9 17.7 52 374-440 13-64 (608)
321 COG2204 AtoC Response regulato 98.8 3.3E-09 7.2E-14 121.2 4.4 142 705-851 166-330 (464)
322 PRK08903 DnaA regulatory inact 98.8 5.1E-08 1.1E-12 104.1 13.3 125 704-847 43-171 (227)
323 PRK12402 replication factor C 98.8 2.2E-08 4.8E-13 113.5 10.7 135 704-848 37-199 (337)
324 PRK05563 DNA polymerase III su 98.8 3.2E-08 6.8E-13 118.6 12.4 126 705-847 40-192 (559)
325 PRK14952 DNA polymerase III su 98.8 3.6E-08 7.7E-13 117.6 12.6 127 705-848 37-192 (584)
326 smart00350 MCM minichromosome 98.8 1.9E-08 4.2E-13 119.7 10.3 165 380-565 204-400 (509)
327 PRK07993 DNA polymerase III su 98.8 1.2E-07 2.6E-12 106.4 16.1 159 411-590 22-200 (334)
328 PRK06871 DNA polymerase III su 98.8 1.4E-07 3E-12 104.9 16.3 135 411-565 22-179 (325)
329 PF13177 DNA_pol3_delta2: DNA 98.8 2.6E-08 5.7E-13 100.3 9.2 138 383-551 1-160 (162)
330 cd00009 AAA The AAA+ (ATPases 98.8 2.6E-08 5.6E-13 97.4 9.0 106 704-810 20-130 (151)
331 KOG1969 DNA replication checkp 98.8 1.9E-08 4E-13 117.0 8.9 133 705-848 328-483 (877)
332 KOG0989 Replication factor C, 98.7 8.1E-09 1.8E-13 109.4 5.4 135 704-848 58-203 (346)
333 PRK14958 DNA polymerase III su 98.7 1.1E-08 2.5E-13 120.7 7.3 127 705-848 40-193 (509)
334 PRK14964 DNA polymerase III su 98.7 1.4E-08 3.1E-13 118.2 7.6 145 704-874 36-207 (491)
335 PRK11388 DNA-binding transcrip 98.7 2.1E-08 4.6E-13 123.3 9.5 197 375-601 321-552 (638)
336 PF05621 TniB: Bacterial TniB 98.7 5E-07 1.1E-11 97.7 18.7 185 413-609 61-275 (302)
337 PRK10820 DNA-binding transcrip 98.7 4.9E-08 1.1E-12 116.5 12.1 198 374-601 199-435 (520)
338 PRK06620 hypothetical protein; 98.7 2.3E-08 5E-13 105.3 8.2 116 704-847 45-161 (214)
339 PRK08769 DNA polymerase III su 98.7 2E-07 4.4E-12 103.4 16.0 159 411-591 24-205 (319)
340 PRK08116 hypothetical protein; 98.7 9.5E-08 2.1E-12 104.2 13.0 132 413-562 114-257 (268)
341 TIGR01650 PD_CobS cobaltochela 98.7 2.6E-08 5.7E-13 109.5 8.5 135 704-845 65-232 (327)
342 PRK05022 anaerobic nitric oxid 98.7 7.3E-08 1.6E-12 115.0 13.1 198 377-604 185-421 (509)
343 COG0593 DnaA ATPase involved i 98.7 3.2E-08 7E-13 111.6 9.3 135 705-847 115-258 (408)
344 PRK08691 DNA polymerase III su 98.7 1.3E-07 2.8E-12 112.9 14.7 134 704-848 39-193 (709)
345 PF01637 Arch_ATPase: Archaeal 98.7 4.7E-08 1E-12 104.1 10.1 184 381-587 1-227 (234)
346 PRK07994 DNA polymerase III su 98.7 2.4E-07 5.1E-12 111.2 16.5 126 705-847 40-192 (647)
347 KOG2680 DNA helicase TIP49, TB 98.7 4.1E-07 8.8E-12 95.7 16.1 115 478-609 289-415 (454)
348 PF07726 AAA_3: ATPase family 98.7 1.3E-09 2.9E-14 102.6 -2.1 111 415-543 1-129 (131)
349 PRK06645 DNA polymerase III su 98.7 2.5E-08 5.5E-13 117.1 8.1 135 704-848 44-202 (507)
350 TIGR02397 dnaX_nterm DNA polym 98.7 4E-08 8.6E-13 112.3 9.5 128 704-848 37-191 (355)
351 PF00158 Sigma54_activat: Sigm 98.7 2.6E-08 5.6E-13 100.7 6.6 134 381-544 1-155 (168)
352 PRK14959 DNA polymerase III su 98.7 2.5E-07 5.3E-12 110.1 15.8 127 704-847 39-192 (624)
353 COG1219 ClpX ATP-dependent pro 98.7 6.8E-08 1.5E-12 102.6 9.7 90 704-794 98-202 (408)
354 COG2204 AtoC Response regulato 98.7 5.3E-08 1.2E-12 111.5 9.6 196 376-601 138-372 (464)
355 PRK06964 DNA polymerase III su 98.7 7.5E-08 1.6E-12 107.7 10.5 138 411-564 19-203 (342)
356 PRK14957 DNA polymerase III su 98.7 5.3E-08 1.2E-12 115.0 9.8 127 705-848 40-193 (546)
357 PRK15429 formate hydrogenlyase 98.7 1.8E-07 3.9E-12 115.9 14.7 197 376-602 373-608 (686)
358 PRK14970 DNA polymerase III su 98.7 9E-08 2E-12 109.9 10.9 129 704-847 40-181 (367)
359 cd05494 Bromodomain_1 Bromodom 98.7 7.8E-09 1.7E-13 96.8 1.8 70 906-975 11-89 (114)
360 COG3604 FhlA Transcriptional r 98.6 1.5E-08 3.3E-13 113.9 4.1 184 705-895 248-456 (550)
361 TIGR02031 BchD-ChlD magnesium 98.6 6.7E-08 1.5E-12 116.5 9.6 134 413-565 16-174 (589)
362 PRK05896 DNA polymerase III su 98.6 5.1E-08 1.1E-12 115.3 8.1 127 704-847 39-192 (605)
363 COG1221 PspF Transcriptional r 98.6 1E-07 2.3E-12 107.2 9.9 172 704-889 102-302 (403)
364 TIGR02974 phageshock_pspF psp 98.6 5.8E-08 1.3E-12 109.1 7.9 142 705-851 24-188 (329)
365 COG5271 MDN1 AAA ATPase contai 98.6 2.1E-07 4.6E-12 114.2 12.8 139 413-567 1543-1705(4600)
366 PRK07133 DNA polymerase III su 98.6 8.1E-08 1.8E-12 115.7 9.5 134 704-847 41-191 (725)
367 COG1474 CDC6 Cdc6-related prot 98.6 1.8E-07 4E-12 105.9 11.9 140 704-848 43-205 (366)
368 COG0714 MoxR-like ATPases [Gen 98.6 7.4E-08 1.6E-12 108.8 8.6 128 704-843 44-200 (329)
369 PRK09087 hypothetical protein; 98.6 8.1E-08 1.8E-12 102.1 8.4 119 705-847 46-167 (226)
370 TIGR00368 Mg chelatase-related 98.6 1.1E-07 2.3E-12 111.9 10.1 178 376-607 189-423 (499)
371 PRK06305 DNA polymerase III su 98.6 9.7E-08 2.1E-12 111.6 9.5 127 704-847 40-194 (451)
372 COG1239 ChlI Mg-chelatase subu 98.6 2.2E-07 4.8E-12 103.5 11.4 166 375-567 13-234 (423)
373 PRK14951 DNA polymerase III su 98.6 7.4E-08 1.6E-12 115.3 8.1 126 705-847 40-197 (618)
374 PRK06090 DNA polymerase III su 98.6 4.3E-07 9.4E-12 100.7 13.5 134 411-563 23-178 (319)
375 KOG0745 Putative ATP-dependent 98.6 1.3E-07 2.9E-12 104.0 9.2 90 704-794 227-331 (564)
376 TIGR00678 holB DNA polymerase 98.6 2.9E-07 6.4E-12 95.2 11.4 125 704-844 15-166 (188)
377 PRK08116 hypothetical protein; 98.6 5.9E-08 1.3E-12 105.8 6.4 107 704-815 115-226 (268)
378 PHA02244 ATPase-like protein 98.6 1E-07 2.2E-12 105.9 8.1 127 704-837 120-265 (383)
379 PRK15429 formate hydrogenlyase 98.6 2.4E-07 5.3E-12 114.8 12.2 176 705-889 401-602 (686)
380 PF03215 Rad17: Rad17 cell cyc 98.6 1.2E-06 2.7E-11 103.3 16.9 210 372-604 12-269 (519)
381 PRK06647 DNA polymerase III su 98.5 1.2E-07 2.5E-12 113.4 8.0 127 704-847 39-192 (563)
382 PRK14965 DNA polymerase III su 98.5 9.6E-08 2.1E-12 115.0 7.2 128 704-848 39-193 (576)
383 PRK11331 5-methylcytosine-spec 98.5 1.8E-07 3.9E-12 106.6 9.0 122 704-832 195-357 (459)
384 PRK14953 DNA polymerase III su 98.5 1.2E-07 2.7E-12 111.4 7.9 134 705-848 40-193 (486)
385 smart00763 AAA_PrkA PrkA AAA d 98.5 7.6E-07 1.7E-11 99.1 13.6 56 376-439 47-104 (361)
386 TIGR02329 propionate_PrpR prop 98.5 1.2E-07 2.5E-12 112.4 7.5 142 705-851 237-402 (526)
387 PF07728 AAA_5: AAA domain (dy 98.5 4.9E-08 1.1E-12 95.7 3.2 99 705-810 1-124 (139)
388 PF00158 Sigma54_activat: Sigm 98.5 2E-07 4.3E-12 94.3 7.6 115 704-823 23-155 (168)
389 PRK10820 DNA-binding transcrip 98.5 2.4E-07 5.3E-12 110.6 9.1 140 705-849 229-391 (520)
390 PRK15424 propionate catabolism 98.5 1.8E-07 3.8E-12 110.8 7.7 141 705-850 244-416 (538)
391 PRK05022 anaerobic nitric oxid 98.5 3E-07 6.5E-12 109.8 9.8 140 705-849 212-374 (509)
392 PRK12377 putative replication 98.5 8.3E-07 1.8E-11 95.2 12.1 103 413-529 101-205 (248)
393 PRK08699 DNA polymerase III su 98.5 5.3E-07 1.2E-11 100.8 10.9 136 411-563 19-183 (325)
394 PRK14969 DNA polymerase III su 98.5 1.5E-07 3.2E-12 112.2 6.6 133 705-847 40-192 (527)
395 PRK11608 pspF phage shock prot 98.5 1.6E-07 3.5E-12 105.6 6.7 140 705-849 31-193 (326)
396 PRK11388 DNA-binding transcrip 98.5 2.9E-07 6.3E-12 113.3 9.3 141 705-850 350-510 (638)
397 TIGR01817 nifA Nif-specific re 98.5 1.8E-07 3.9E-12 112.6 7.1 177 705-889 221-421 (534)
398 PRK14954 DNA polymerase III su 98.5 3.3E-07 7.2E-12 110.1 9.1 132 704-847 39-200 (620)
399 TIGR02915 PEP_resp_reg putativ 98.5 4.2E-07 9.1E-12 107.2 9.9 195 377-601 137-370 (445)
400 PRK09111 DNA polymerase III su 98.5 3.6E-07 7.8E-12 109.7 9.1 135 704-848 47-206 (598)
401 PF05673 DUF815: Protein of un 98.5 1.5E-06 3.3E-11 91.2 12.4 160 651-847 21-208 (249)
402 PRK00440 rfc replication facto 98.5 6.4E-07 1.4E-11 100.7 10.4 128 704-848 39-176 (319)
403 PRK07952 DNA replication prote 98.4 1.5E-06 3.2E-11 93.1 12.3 73 414-490 100-175 (244)
404 PRK08181 transposase; Validate 98.4 1.1E-06 2.4E-11 95.4 11.5 104 412-530 105-209 (269)
405 PRK06526 transposase; Provisio 98.4 5.2E-07 1.1E-11 97.4 8.9 75 412-490 97-172 (254)
406 PRK13407 bchI magnesium chelat 98.4 4.6E-07 1E-11 101.2 8.7 76 765-846 129-216 (334)
407 PRK14948 DNA polymerase III su 98.4 8.6E-07 1.9E-11 107.2 11.6 133 704-847 39-194 (620)
408 COG1484 DnaC DNA replication p 98.4 1.3E-06 2.8E-11 94.4 11.9 74 412-489 104-179 (254)
409 PRK08181 transposase; Validate 98.4 1.9E-07 4E-12 101.4 5.0 107 704-816 107-215 (269)
410 TIGR02655 circ_KaiC circadian 98.4 3.8E-06 8.2E-11 99.6 16.1 75 704-778 264-367 (484)
411 PRK14955 DNA polymerase III su 98.4 3.1E-07 6.7E-12 106.2 6.6 132 704-847 39-200 (397)
412 PRK06835 DNA replication prote 98.4 1E-06 2.2E-11 98.5 10.4 103 413-529 183-288 (329)
413 CHL00081 chlI Mg-protoporyphyr 98.4 9.7E-07 2.1E-11 98.8 10.1 141 704-846 39-232 (350)
414 PRK08451 DNA polymerase III su 98.4 7.9E-07 1.7E-11 104.7 9.8 126 705-847 38-190 (535)
415 PRK06921 hypothetical protein; 98.4 1.5E-06 3.2E-11 94.7 11.1 72 412-488 116-188 (266)
416 KOG1051 Chaperone HSP104 and r 98.4 1.2E-06 2.7E-11 106.9 10.9 131 380-530 563-711 (898)
417 PRK13531 regulatory ATPase Rav 98.4 6.3E-07 1.4E-11 103.1 8.0 24 704-727 40-63 (498)
418 PRK09183 transposase/IS protei 98.4 1.4E-06 3.1E-11 94.6 10.2 105 411-529 100-205 (259)
419 KOG0955 PHD finger protein BR1 98.4 2.4E-07 5.2E-12 114.3 4.6 77 899-975 566-642 (1051)
420 PRK09862 putative ATP-dependen 98.4 5.8E-07 1.3E-11 105.3 7.5 149 376-555 188-391 (506)
421 PRK05707 DNA polymerase III su 98.4 1.5E-06 3.2E-11 97.4 10.5 132 704-845 23-177 (328)
422 COG0606 Predicted ATPase with 98.4 1.2E-07 2.6E-12 107.0 1.7 48 375-437 175-222 (490)
423 PRK14950 DNA polymerase III su 98.4 6.6E-07 1.4E-11 108.4 8.2 133 705-847 40-193 (585)
424 PRK06526 transposase; Provisio 98.3 2.2E-07 4.8E-12 100.3 3.2 106 704-815 99-206 (254)
425 PRK08939 primosomal protein Dn 98.3 2.6E-06 5.6E-11 94.6 11.5 74 412-489 155-229 (306)
426 PF12775 AAA_7: P-loop contain 98.3 6.9E-07 1.5E-11 97.6 6.5 141 411-567 31-195 (272)
427 PRK14971 DNA polymerase III su 98.3 1.5E-06 3.2E-11 105.2 9.7 127 704-847 40-194 (614)
428 TIGR00602 rad24 checkpoint pro 98.3 4.5E-06 9.7E-11 100.4 13.6 139 705-848 112-289 (637)
429 PRK12377 putative replication 98.3 5.9E-07 1.3E-11 96.4 5.0 103 704-815 102-211 (248)
430 PRK05917 DNA polymerase III su 98.3 7.1E-06 1.5E-10 89.4 13.3 123 411-552 17-154 (290)
431 KOG0008 Transcription initiati 98.3 3.3E-07 7.2E-12 112.0 2.9 76 901-976 1385-1460(1563)
432 PRK09302 circadian clock prote 98.3 1.1E-05 2.3E-10 96.9 15.8 40 409-448 27-67 (509)
433 PRK10923 glnG nitrogen regulat 98.3 1.5E-06 3.3E-11 103.2 8.4 197 377-602 136-370 (469)
434 COG0470 HolB ATPase involved i 98.3 5.9E-06 1.3E-10 93.1 12.7 124 705-841 26-176 (325)
435 PRK13765 ATP-dependent proteas 98.3 2.6E-06 5.7E-11 102.6 9.8 51 374-439 26-76 (637)
436 KOG2170 ATPase of the AAA+ sup 98.3 3E-05 6.4E-10 82.6 16.3 188 381-585 84-320 (344)
437 PF14532 Sigma54_activ_2: Sigm 98.2 6.2E-07 1.3E-11 87.9 3.3 90 411-528 19-108 (138)
438 PRK06921 hypothetical protein; 98.2 1.5E-06 3.2E-11 94.7 6.5 106 704-815 118-230 (266)
439 PRK15115 response regulator Gl 98.2 2.3E-06 5E-11 100.9 8.7 167 413-601 157-365 (444)
440 PF05729 NACHT: NACHT domain 98.2 1.6E-05 3.6E-10 79.7 13.6 146 415-567 2-165 (166)
441 PRK09183 transposase/IS protei 98.2 7E-07 1.5E-11 97.0 3.7 108 704-816 103-212 (259)
442 KOG0991 Replication factor C, 98.2 4.1E-06 8.8E-11 85.5 8.8 81 704-788 49-137 (333)
443 PF01695 IstB_IS21: IstB-like 98.2 1.3E-06 2.7E-11 89.4 5.3 104 411-529 45-149 (178)
444 PTZ00111 DNA replication licen 98.2 1.7E-06 3.7E-11 105.9 7.2 169 380-565 451-657 (915)
445 KOG1472 Histone acetyltransfer 98.2 8.2E-07 1.8E-11 105.3 4.3 63 913-975 301-363 (720)
446 PF13173 AAA_14: AAA domain 98.2 4.7E-06 1E-10 80.5 8.7 122 704-837 3-126 (128)
447 PF05621 TniB: Bacterial TniB 98.2 3.8E-06 8.3E-11 90.9 8.8 183 703-898 61-272 (302)
448 KOG1970 Checkpoint RAD17-RFC c 98.2 4.8E-05 1E-09 86.9 17.7 212 374-603 77-320 (634)
449 PRK06835 DNA replication prote 98.2 1.4E-06 3E-11 97.5 5.4 105 704-815 184-294 (329)
450 PRK07952 DNA replication prote 98.2 9.2E-07 2E-11 94.6 3.7 107 705-816 101-211 (244)
451 PRK11361 acetoacetate metaboli 98.2 1E-05 2.2E-10 95.9 12.8 195 377-601 141-374 (457)
452 PLN03210 Resistant to P. syrin 98.2 2.6E-05 5.7E-10 102.3 17.8 183 375-588 180-389 (1153)
453 COG1484 DnaC DNA replication p 98.2 1.3E-06 2.8E-11 94.5 4.5 103 703-816 105-215 (254)
454 TIGR01818 ntrC nitrogen regula 98.2 6.3E-06 1.4E-10 97.8 10.7 196 379-603 134-367 (463)
455 PF13401 AAA_22: AAA domain; P 98.2 4.1E-06 8.9E-11 80.9 7.0 99 704-807 5-125 (131)
456 TIGR02915 PEP_resp_reg putativ 98.2 1.7E-06 3.7E-11 102.1 5.2 135 705-849 164-326 (445)
457 TIGR02030 BchI-ChlI magnesium 98.1 5.6E-06 1.2E-10 92.8 8.9 77 764-846 131-219 (337)
458 COG1220 HslU ATP-dependent pro 98.1 9.8E-06 2.1E-10 87.1 10.0 76 765-843 251-346 (444)
459 PF13173 AAA_14: AAA domain 98.1 1.1E-05 2.4E-10 78.0 9.7 71 414-489 3-73 (128)
460 PF13401 AAA_22: AAA domain; P 98.1 1.5E-05 3.2E-10 77.0 10.2 91 413-513 4-113 (131)
461 PRK10923 glnG nitrogen regulat 98.1 2.2E-06 4.7E-11 101.9 5.2 173 705-889 163-364 (469)
462 PRK08939 primosomal protein Dn 98.1 1.2E-06 2.5E-11 97.3 2.6 107 704-816 157-267 (306)
463 PRK07471 DNA polymerase III su 98.1 1.7E-05 3.7E-10 90.2 12.0 133 704-846 42-213 (365)
464 PF07726 AAA_3: ATPase family 98.1 4.2E-06 9.1E-11 79.1 5.7 94 705-810 1-113 (131)
465 TIGR02442 Cob-chelat-sub cobal 98.1 6.3E-06 1.4E-10 100.8 8.7 136 704-846 26-214 (633)
466 PF01695 IstB_IS21: IstB-like 98.1 4.8E-07 1.1E-11 92.5 -0.9 107 704-816 48-156 (178)
467 KOG0990 Replication factor C, 98.1 4.2E-05 9.1E-10 82.2 13.6 130 704-847 63-204 (360)
468 PRK04132 replication factor C 98.1 5.7E-06 1.2E-10 102.0 8.1 126 705-847 566-703 (846)
469 TIGR02031 BchD-ChlD magnesium 98.1 6.4E-06 1.4E-10 99.6 8.4 137 704-847 17-175 (589)
470 PRK15115 response regulator Gl 98.1 5.1E-06 1.1E-10 98.0 7.3 134 705-848 159-320 (444)
471 PF00931 NB-ARC: NB-ARC domain 98.1 3.5E-05 7.5E-10 85.2 13.2 165 411-595 17-202 (287)
472 PRK07276 DNA polymerase III su 98.1 0.00011 2.3E-09 80.6 16.2 143 384-562 7-172 (290)
473 TIGR02237 recomb_radB DNA repa 98.0 2E-05 4.2E-10 83.0 10.1 83 409-491 8-111 (209)
474 PRK09112 DNA polymerase III su 98.0 2E-05 4.3E-10 89.2 10.6 131 705-845 47-212 (351)
475 PRK06964 DNA polymerase III su 98.0 1.6E-05 3.6E-10 89.1 9.9 132 703-844 21-202 (342)
476 COG3267 ExeA Type II secretory 98.0 0.00022 4.8E-09 74.9 17.3 177 415-609 53-259 (269)
477 PF03969 AFG1_ATPase: AFG1-lik 98.0 8.2E-06 1.8E-10 92.4 7.4 115 699-823 58-179 (362)
478 PRK11361 acetoacetate metaboli 98.0 6.9E-06 1.5E-10 97.3 7.2 139 705-849 168-330 (457)
479 smart00350 MCM minichromosome 98.0 4.1E-06 8.9E-11 99.9 5.0 133 704-847 237-401 (509)
480 PF14532 Sigma54_activ_2: Sigm 98.0 8E-06 1.7E-10 80.0 6.0 89 705-813 23-113 (138)
481 PRK07132 DNA polymerase III su 98.0 0.0001 2.2E-09 81.4 15.2 128 413-563 18-160 (299)
482 PRK08058 DNA polymerase III su 98.0 1.9E-05 4E-10 89.1 9.6 130 704-843 29-179 (329)
483 TIGR03015 pepcterm_ATPase puta 98.0 9.1E-06 2E-10 89.0 6.5 176 705-895 45-246 (269)
484 PRK06851 hypothetical protein; 98.0 3.4E-05 7.5E-10 86.9 11.1 36 413-448 30-65 (367)
485 PRK05564 DNA polymerase III su 98.0 3.7E-05 8E-10 86.3 11.3 127 704-845 27-164 (313)
486 TIGR01818 ntrC nitrogen regula 98.0 5.7E-06 1.2E-10 98.2 4.5 180 705-889 159-360 (463)
487 PF05729 NACHT: NACHT domain 97.9 3.6E-05 7.9E-10 77.2 9.4 137 706-847 3-164 (166)
488 COG2812 DnaX DNA polymerase II 97.9 3.8E-05 8.2E-10 89.7 10.5 150 704-874 39-210 (515)
489 PRK10365 transcriptional regul 97.9 3.8E-05 8.3E-10 90.5 10.9 189 380-601 140-370 (441)
490 PRK13406 bchD magnesium chelat 97.9 2.7E-05 5.8E-10 93.4 9.6 176 414-608 26-235 (584)
491 PRK05818 DNA polymerase III su 97.9 4.6E-05 1E-09 81.3 10.1 125 411-552 5-147 (261)
492 PF00910 RNA_helicase: RNA hel 97.9 2.8E-05 6E-10 72.6 7.4 25 416-440 1-25 (107)
493 PRK07399 DNA polymerase III su 97.9 4.5E-05 9.7E-10 85.1 10.0 133 703-846 26-195 (314)
494 PF03969 AFG1_ATPase: AFG1-lik 97.9 2.8E-05 6E-10 88.1 8.4 106 410-529 59-167 (362)
495 cd01120 RecA-like_NTPases RecA 97.9 8.8E-05 1.9E-09 74.0 11.1 104 706-810 2-137 (165)
496 COG3283 TyrR Transcriptional r 97.9 1.3E-05 2.9E-10 86.6 5.3 139 706-855 230-392 (511)
497 cd01120 RecA-like_NTPases RecA 97.9 3.3E-05 7.2E-10 77.1 7.9 76 416-491 2-99 (165)
498 KOG0008 Transcription initiati 97.9 6.6E-06 1.4E-10 101.1 3.0 78 899-976 1262-1339(1563)
499 PF00910 RNA_helicase: RNA hel 97.9 3.7E-05 8E-10 71.8 7.4 86 706-809 1-107 (107)
500 KOG1828 IRF-2-binding protein 97.9 3.6E-06 7.8E-11 91.4 0.4 65 912-976 33-97 (418)
No 1
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-87 Score=737.36 Aligned_cols=525 Identities=31% Similarity=0.498 Sum_probs=460.2
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
+.++|.+|+|++.+..+|.+++.. +.+|+.|..+|+.||+|||||||||||||+||+|+|.+++ ++|+.+++.+
T Consensus 185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~-----vPf~~isApe 258 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG-----VPFLSISAPE 258 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC-----CceEeecchh
Confidence 367999999999999999999998 9999999999999999999999999999999999999996 9999999999
Q ss_pred HHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCC----CcEEEEecCCC
Q 002045 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSR----GQVVLIGATNR 529 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~----~~vivI~atn~ 529 (976)
+++.+.|++++.++.+|++|....||||||||||++.|+|...+.....+++.+||..||++... ..|+||+|||+
T Consensus 259 ivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnR 338 (802)
T KOG0733|consen 259 IVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNR 338 (802)
T ss_pred hhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999988654 57999999999
Q ss_pred ccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCC
Q 002045 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (976)
Q Consensus 530 ~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~ 609 (976)
|+.||++|+|+|||++.|.+..|+..+|.+||+.+++++.+...-++ .+||..|.||+|+||.+||.+|+..|+.|...
T Consensus 339 PDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~-~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld 417 (802)
T KOG0733|consen 339 PDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDF-KQLAKLTPGFVGADLMALCREAAFVAIKRILD 417 (802)
T ss_pred CcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCH-HHHHhcCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999888775554 89999999999999999999999999998766
Q ss_pred cccc-------Ccc---------cc-c-----------c----------c--------ccceeEeehhhhhccccccccc
Q 002045 610 QVYT-------SDD---------KF-L-----------I----------D--------VDSVTVEKYHFIEAMSTITPAA 643 (976)
Q Consensus 610 ~~~~-------~~~---------~~-~-----------~----------~--------~~~~~it~~df~~al~~i~p~~ 643 (976)
+... +++ .. + . . .....|+.+||..|+..++|++
T Consensus 418 ~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSa 497 (802)
T KOG0733|consen 418 QSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSA 497 (802)
T ss_pred cccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcch
Confidence 4331 000 00 0 0 0 1124578899999999999999
Q ss_pred ccccccccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHH
Q 002045 644 HRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAI 723 (976)
Q Consensus 644 ~r~~~~~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~ai 723 (976)
.|+.....+.++|++|++|+++..++... |..|+++++.|+++|+.. |.|+|||||||||||+||+|+
T Consensus 498 kREGF~tVPdVtW~dIGaL~~vR~eL~~a---I~~PiK~pd~~k~lGi~~---------PsGvLL~GPPGCGKTLlAKAV 565 (802)
T KOG0733|consen 498 KREGFATVPDVTWDDIGALEEVRLELNMA---ILAPIKRPDLFKALGIDA---------PSGVLLCGPPGCGKTLLAKAV 565 (802)
T ss_pred hcccceecCCCChhhcccHHHHHHHHHHH---HhhhccCHHHHHHhCCCC---------CCceEEeCCCCccHHHHHHHH
Confidence 99999999999999999998887777665 556899999999998633 579999999999999999999
Q ss_pred HHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH-------HHHHHHHHHHHHHhhCC
Q 002045 724 LHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLEELP 796 (976)
Q Consensus 724 a~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~-------~~~~~~~~l~~ll~~~~ 796 (976)
|++. +++|++|..++|+++| +|++|.+++++|+.|+..+||||||||||+|.+. ++.+++++|++.|++++
T Consensus 566 ANEa-g~NFisVKGPELlNkY-VGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~ 643 (802)
T KOG0733|consen 566 ANEA-GANFISVKGPELLNKY-VGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLE 643 (802)
T ss_pred hhhc-cCceEeecCHHHHHHH-hhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccc
Confidence 9997 9999999999999997 8999999999999999999999999999999853 77899999999999999
Q ss_pred CCCCEEEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCC
Q 002045 797 SHLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVP 874 (976)
Q Consensus 797 ~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~ 874 (976)
.+.+|+||||||+| +.+|+ |.+|+|| .+++|++|+.++|..||+.+.++ .+.+...+++|++|+.-+
T Consensus 644 ~R~gV~viaATNRP-DiIDp--AiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn--------~k~pl~~dVdl~eia~~~ 712 (802)
T KOG0733|consen 644 ERRGVYVIAATNRP-DIIDP--AILRPGRLDKLLYVGLPNAEERVAILKTITKN--------TKPPLSSDVDLDEIARNT 712 (802)
T ss_pred cccceEEEeecCCC-cccch--hhcCCCccCceeeecCCCHHHHHHHHHHHhcc--------CCCCCCcccCHHHHhhcc
Confidence 99999999999999 99999 9999998 89999999999999999999985 135668899999999888
Q ss_pred CCCCCCchhHHHHHH-HHHHHHHHhH---------hhhhhh---hhccccccccccccccCCCCCCccch
Q 002045 875 TVESGPKASELKAKV-EAEQHALRRL---------RMCLRD---VCNRMLYDKRFSAFHYPVTDEDAPNY 931 (976)
Q Consensus 875 ~~~sg~s~aelk~~~-ea~~~alreL---------r~~L~~---il~~l~~~~~~~~F~~PV~~~~~pdY 931 (976)
. +.|+++++|..+| ++...++++. ..+++. +++..++..+|....+.|+..+-.-|
T Consensus 713 ~-c~gftGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Y 781 (802)
T KOG0733|consen 713 K-CEGFTGADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKY 781 (802)
T ss_pred c-ccCCchhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHH
Confidence 3 4456669999999 8888888761 112221 12233455555566666666544333
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-76 Score=668.31 Aligned_cols=499 Identities=33% Similarity=0.501 Sum_probs=447.5
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
+.++ .+++|+......+++++.+|+.++..+..+|+++|+++|+|||||||||.+++++|++.+ +.++.+++.+
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~-----a~~~~i~~pe 253 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG-----AFLFLINGPE 253 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhC-----ceeEecccHH
Confidence 4566 789999999999999999999999999999999999999999999999999999999986 7899999999
Q ss_pred HHhhhHhHHHHHHHHHHHHHHhcC-CcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCccc
Q 002045 454 VLSKWVGEAERQLKLLFEEAQRNQ-PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDA 532 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~~~~-p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~~ 532 (976)
+++++.|+++..++..|+.+...+ |+||||||+|.|+|++..... ...++..+|+.+|+++...++++||++||+|+.
T Consensus 254 li~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~s 332 (693)
T KOG0730|consen 254 LISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDS 332 (693)
T ss_pred HHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccc
Confidence 999999999999999999999999 999999999999999877666 678999999999999999999999999999999
Q ss_pred cchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCccc
Q 002045 533 IDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVY 612 (976)
Q Consensus 533 ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~~~~ 612 (976)
||++++| |||+..+.+..|+..+|.+|++.+++.++.. +...+..+|..+.||+|+|+.++|.+|++.++++
T Consensus 333 ld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~------ 404 (693)
T KOG0730|consen 333 LDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALCREASLQATRR------ 404 (693)
T ss_pred cChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh------
Confidence 9999999 9999999999999999999999999999887 4455689999999999999999999999999986
Q ss_pred cCcccccccccceeEeehhhhhcccccccccccccccccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhc
Q 002045 613 TSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCML 692 (976)
Q Consensus 613 ~~~~~~~~~~~~~~it~~df~~al~~i~p~~~r~~~~~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~ 692 (976)
+.++|..|+..+.|++.|...+..+.++|.+|+|+++..+++.+. |..++.+++.|.++|+.
T Consensus 405 ---------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~---V~~p~~~pe~F~r~Gi~ 466 (693)
T KOG0730|consen 405 ---------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRELQQA---VEWPLKHPEKFARFGIS 466 (693)
T ss_pred ---------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHHHHH---HhhhhhchHHHHHhcCC
Confidence 457899999999999999999999999999999987665555444 34489999999999864
Q ss_pred cCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccc
Q 002045 693 SHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQ 772 (976)
Q Consensus 693 ~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDE 772 (976)
+ |+|||||||||||||++|+|+|.+. +++|+++++++|+++| +|++|++++.+|+.|++.+||||||||
T Consensus 467 p---------pkGVLlyGPPGC~KT~lAkalAne~-~~nFlsvkgpEL~sk~-vGeSEr~ir~iF~kAR~~aP~IiFfDE 535 (693)
T KOG0730|consen 467 P---------PKGVLLYGPPGCGKTLLAKALANEA-GMNFLSVKGPELFSKY-VGESERAIREVFRKARQVAPCIIFFDE 535 (693)
T ss_pred C---------CceEEEECCCCcchHHHHHHHhhhh-cCCeeeccCHHHHHHh-cCchHHHHHHHHHHHhhcCCeEEehhh
Confidence 4 6899999999999999999999997 8999999999999998 899999999999999999999999999
Q ss_pred cchhHHH-------HHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHH
Q 002045 773 FNLWWEN-------AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLG 843 (976)
Q Consensus 773 id~l~~~-------~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~ 843 (976)
||++... ++++++++|++.|++++...+|+|||+||+| +.||+ |.+|+|| .+|+|++|+.+.|.+||+
T Consensus 536 iDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRp-d~ID~--ALlRPGRlD~iiyVplPD~~aR~~Ilk 612 (693)
T KOG0730|consen 536 IDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRP-DMIDP--ALLRPGRLDRIIYVPLPDLEARLEILK 612 (693)
T ss_pred HHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCCh-hhcCH--HHcCCcccceeEeecCccHHHHHHHHH
Confidence 9999854 5899999999999999999999999999999 99999 9999887 999999999999999999
Q ss_pred HHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHH-HHHHHHHHhHhhhhhhhhccccccccccccccC
Q 002045 844 RLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPKASELKAKV-EAEQHALRRLRMCLRDVCNRMLYDKRFSAFHYP 922 (976)
Q Consensus 844 ~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~sg~s~aelk~~~-ea~~~alreLr~~L~~il~~l~~~~~~~~F~~P 922 (976)
.+++ +.+...++|+..|+++|++||| +||..+| +|+..++++-=. -..+...++..........
T Consensus 613 ~~~k----------kmp~~~~vdl~~La~~T~g~SG---Ael~~lCq~A~~~a~~e~i~--a~~i~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 613 QCAK----------KMPFSEDVDLEELAQATEGYSG---AEIVAVCQEAALLALRESIE--ATEITWQHFEEALKAVRPS 677 (693)
T ss_pred HHHh----------cCCCCccccHHHHHHHhccCCh---HHHHHHHHHHHHHHHHHhcc--cccccHHHHHHHHHhhccc
Confidence 9998 4677778999999999977776 9999999 999999887111 1122333334444444555
Q ss_pred CCCCCccchHHH
Q 002045 923 VTDEDAPNYRSI 934 (976)
Q Consensus 923 V~~~~~pdY~~~ 934 (976)
++...+..|.+.
T Consensus 678 ~~~~~~~~Ye~f 689 (693)
T KOG0730|consen 678 LTSELLEKYEDF 689 (693)
T ss_pred CCHHHHHHHHHH
Confidence 566566555554
No 3
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-67 Score=627.54 Aligned_cols=666 Identities=51% Similarity=0.732 Sum_probs=554.9
Q ss_pred CCcchhhhhhccCCCCCcccCCCCCCCCCcccccccccccccccccccccCCCCCCchhHHhhhcccccCCCCCCCCCCC
Q 002045 289 DSDDSLLVDELDQGPAIPWGRGGSRSGPPWLFGGLEMHGTTAWGLNVAASGWGHQGDTLAALTSGIQTAGPSSKGGADIQ 368 (976)
Q Consensus 289 ~sd~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (976)
.+.++...+..-...-..++|+...+.++|...+.............-.++++.+.........+.+.........++++
T Consensus 175 ~~~~s~~~~~~~p~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~i~~~~s~~~~~~~~~~~~t~~~~~~~~~~~~~~d~d 254 (1080)
T KOG0732|consen 175 SINDSDSRDHVPPGGRQLTKRGQVQSRLHMHKSSGDTERSRSLRIESWSSGKNLQSLFDKLNTKGLQTAGLRVQKEADSD 254 (1080)
T ss_pred ccccccchhccCCCCchhhhhhhhcccccccccccchhhhhhhhhhhcccccccchhhhhhhcCccccchhhcccccccC
Confidence 34444444555444445668999999999998776666655555555567788777777777888888888777789999
Q ss_pred CcccCCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEE
Q 002045 369 PLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM 448 (976)
Q Consensus 369 ~~~~~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~ 448 (976)
|+..+..++|++|+|+++++.+|+++|.+|+.||+.|..+++.||+|||||||||||||+.|+++|..+.....++.|+.
T Consensus 255 p~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffm 334 (1080)
T KOG0732|consen 255 PLSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFM 334 (1080)
T ss_pred chhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred ecchhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCC
Q 002045 449 RKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (976)
Q Consensus 449 ~~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn 528 (976)
.++++++++|+|+.+.+++.+|++|+..+|+|||+||||.|+|.|+..+++.+..++.+||.+|+++..++.|+||+|||
T Consensus 335 rkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 335 RKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred hcCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 002045 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (976)
Q Consensus 529 ~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~ 608 (976)
+++.++++|+|||||+++++|++|+.+.|.+|+.++.+.|...+...++..||..+.||.|+||+.+|.+|++.++++..
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~ 494 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSF 494 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCcccccccccceeEeehhhhhcccccccccccccccccCCCcccchhhh-HHHHHHHhhhhcccCCCCCCchHHH
Q 002045 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHRGATVHSRPLSLVVAPCL-QRHLQKAMNYISDIFPPLGMSSELT 687 (976)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~it~~df~~al~~i~p~~~r~~~~~~~~~~~~~i~~l-~~~l~~~~~~l~~i~~~~~~~~~~~ 687 (976)
++++...+++.++...+.+...||..|+..+.|+..+...+...+++....+.| -....+.+..+..+.......+...
T Consensus 495 Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~ 574 (1080)
T KOG0732|consen 495 PQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHL 574 (1080)
T ss_pred CeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHh
Confidence 999999999999998888999999999999999999988777777775555544 2222222222222333333334444
Q ss_pred hhhhccCCC--CCCcccCCceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCC
Q 002045 688 KLCMLSHGS--AIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTP 765 (976)
Q Consensus 688 ~~~~~~~g~--~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p 765 (976)
.+-+..+.. ..++.+++.+|+.|..|.|.+++++||.|.+.++++.++..+.++++.-.++.+..|.++|.+|+..+|
T Consensus 575 ~~~v~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~p 654 (1080)
T KOG0732|consen 575 KLLVRSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTP 654 (1080)
T ss_pred HHHHHhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHHhccccccHHHHHHHHHHHHhccCC
Confidence 444555555 788889999999999999999999999999999999999999999876567889999999999999999
Q ss_pred ceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCC-ccEEEecCCCHHHHHHHHHH
Q 002045 766 SILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPL-RSVYQVEKPSTEDRSLFLGR 844 (976)
Q Consensus 766 ~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~-r~~i~v~~P~~~er~~i~~~ 844 (976)
|||||..+|.|.......+...|...|..+.....|..+-|-+ ..++.. ..++.+..|....+..+|+.
T Consensus 655 si~~ip~~d~w~~~~p~s~~~~~~~~l~~~~~~t~i~e~~t~~----------~~~~~~~~~~~t~~~p~~~s~~~ff~r 724 (1080)
T KOG0732|consen 655 SIVFIPNVDEWARVIPVSFLEEFLSSLDEKALSTPILELHTWD----------TSFESVNKSVVTLSKPSAESTGAFFKR 724 (1080)
T ss_pred ceeeccchhhhhhcCcchhhhcchhcchhhhhccchhhhcccc----------ccccccCccccccccchhhhhHHHHHH
Confidence 9999999999998888888888888887665555665554322 222222 27888999999999999999
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHH-HHHhHhhhhhhhhccccccccccccccCC
Q 002045 845 LIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPKASELKAKVEAEQH-ALRRLRMCLRDVCNRMLYDKRFSAFHYPV 923 (976)
Q Consensus 845 ~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~sg~s~aelk~~~ea~~~-alreLr~~L~~il~~l~~~~~~~~F~~PV 923 (976)
+|+.....+.-...+.+. .++.++..+.........+.++..++..+ ..+.+++++..++. ..+...+
T Consensus 725 ~I~~~~~~~~~~~~k~~~---~~~~~p~v~~d~~~t~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--------~~~~~~~ 793 (1080)
T KOG0732|consen 725 LIRKISQEPSGEAGKRPR---PLPELPKVAKDSEFTELDESKKKIEAEDLRLKNRLKIKLSDLLN--------SKPKEEC 793 (1080)
T ss_pred HHHHHhhhhhccccCCCC---cccccccccCCccccchhhhhcchhHHHHHHhhhhhccccchhc--------ccccCCc
Confidence 999776644432222222 56677777766666666666666655544 77888899887762 3334444
Q ss_pred CCCCccchHHHhcCC--CCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcC
Q 002045 924 TDEDAPNYRSIIQNP--MDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTC 975 (976)
Q Consensus 924 ~~~~~pdY~~~I~~P--mdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~ 975 (976)
......+|+..+..| |.+..+.++++.|+|.++.+|..|+.||..||..++.
T Consensus 794 ~~~~~~~~v~~l~~~~~~~~~~~~~r~~s~~~~~~~q~l~d~~li~r~a~~~~~ 847 (1080)
T KOG0732|consen 794 QYESSDNVVKILQINQMDWLEEILKRVWSGEYSTPKQFLSDIKLILRDASSSED 847 (1080)
T ss_pred cccccccceeehhhhhhHHHHHHhhcCCcccccccccccccchhhcccchhccC
Confidence 445566777766655 4455689999999999999999999999999988764
No 4
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.6e-62 Score=605.13 Aligned_cols=489 Identities=34% Similarity=0.520 Sum_probs=422.8
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
+.++|++|+|++.+++.|++++.+|+.+|++|..+|+.++.++|||||||||||++|+++|++++ ..|+.+++.+
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~-----~~~i~i~~~~ 247 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG-----AYFISINGPE 247 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC-----CeEEEEecHH
Confidence 67999999999999999999999999999999999999999999999999999999999999985 6788999999
Q ss_pred HHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCcccc
Q 002045 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAI 533 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~~l 533 (976)
+.+.+.|.++..++.+|..+....|+||||||||.+++.+.........+++.+|+.+|+++...+.++||++||.++.|
T Consensus 248 i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~l 327 (733)
T TIGR01243 248 IMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDAL 327 (733)
T ss_pred HhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhc
Confidence 99999999999999999999999999999999999998876655556678999999999998888899999999999999
Q ss_pred chhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCcccc
Q 002045 534 DGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYT 613 (976)
Q Consensus 534 d~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~~~~~ 613 (976)
|++++++|||+..+.++.|+.++|.+||+.+++...+..+. .+..++..+.||+++++..+|..|+..++++.......
T Consensus 328 d~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~-~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~ 406 (733)
T TIGR01243 328 DPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDV-DLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKI 406 (733)
T ss_pred CHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcccc-CHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999988877654333 35889999999999999999999999999876431111
Q ss_pred --Cccccc-ccccceeEeehhhhhcccccccccccccccccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhh
Q 002045 614 --SDDKFL-IDVDSVTVEKYHFIEAMSTITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLC 690 (976)
Q Consensus 614 --~~~~~~-~~~~~~~it~~df~~al~~i~p~~~r~~~~~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~ 690 (976)
...... .-.....++..||..++..+.|...+......+.+.|.+++++....+++.+.+ ..++.+++.+.++|
T Consensus 407 ~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v---~~~~~~~~~~~~~g 483 (733)
T TIGR01243 407 NFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAV---EWPLKHPEIFEKMG 483 (733)
T ss_pred ccccccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHHHHHHH---HhhhhCHHHHHhcC
Confidence 000000 001234588899999999999999888888888999999999877766665542 22567777777776
Q ss_pred hccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEec
Q 002045 691 MLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYI 770 (976)
Q Consensus 691 ~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfi 770 (976)
+. ++.|+||+||||||||++|+++|+++ +.+|+.+++++++++| +|+++++++.+|..|+...||||||
T Consensus 484 ~~---------~~~giLL~GppGtGKT~lakalA~e~-~~~fi~v~~~~l~~~~-vGese~~i~~~f~~A~~~~p~iifi 552 (733)
T TIGR01243 484 IR---------PPKGVLLFGPPGTGKTLLAKAVATES-GANFIAVRGPEILSKW-VGESEKAIREIFRKARQAAPAIIFF 552 (733)
T ss_pred CC---------CCceEEEECCCCCCHHHHHHHHHHhc-CCCEEEEehHHHhhcc-cCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 42 25789999999999999999999998 7999999999999987 8999999999999999999999999
Q ss_pred cccchhHHH--------HHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHH
Q 002045 771 PQFNLWWEN--------AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSL 840 (976)
Q Consensus 771 DEid~l~~~--------~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~ 840 (976)
||||.+++. ..++++++|++.|+++....+|+||||||+| +.||+ +.+|++| .+++|++|+.++|.+
T Consensus 553 DEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~-~~ld~--allRpgRfd~~i~v~~Pd~~~R~~ 629 (733)
T TIGR01243 553 DEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRP-DILDP--ALLRPGRFDRLILVPPPDEEARKE 629 (733)
T ss_pred EChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCCh-hhCCH--hhcCCCccceEEEeCCcCHHHHHH
Confidence 999999743 3567888888999988888899999999999 89999 7777555 889999999999999
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHH-HHHHHHHHh
Q 002045 841 FLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPKASELKAKV-EAEQHALRR 898 (976)
Q Consensus 841 i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~sg~s~aelk~~~-ea~~~alre 898 (976)
||+.++. +.....++++..|+..+++++| ++|+++| +|.+.++++
T Consensus 630 i~~~~~~----------~~~~~~~~~l~~la~~t~g~sg---adi~~~~~~A~~~a~~~ 675 (733)
T TIGR01243 630 IFKIHTR----------SMPLAEDVDLEELAEMTEGYTG---ADIEAVCREAAMAALRE 675 (733)
T ss_pred HHHHHhc----------CCCCCccCCHHHHHHHcCCCCH---HHHHHHHHHHHHHHHHH
Confidence 9998776 3455667899999999965554 9999999 888888876
No 5
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-57 Score=510.80 Aligned_cols=507 Identities=21% Similarity=0.266 Sum_probs=399.0
Q ss_pred cccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhH
Q 002045 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWV 459 (976)
Q Consensus 380 ~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~ 459 (976)
...+++..+..+..++.- -..|. ..++.....+||+|+||||||++++++|++++ .+++.++|.++++...
T Consensus 402 ~~~~~~~~~~~l~~vl~p-~~~~s---~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg-----~h~~evdc~el~~~s~ 472 (953)
T KOG0736|consen 402 SPPGLEAKVLELVAVLSP-QKQPS---GALLTLNPSVLLHGPPGSGKTTVVRAVASELG-----LHLLEVDCYELVAESA 472 (953)
T ss_pred CCccchHHHHHHHHHhCc-ccCcc---hhccccceEEEEeCCCCCChHHHHHHHHHHhC-----CceEeccHHHHhhccc
Confidence 345666666655554432 22222 12234456899999999999999999999997 7899999999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhh---ccCCCCcEEEEecCCCccccchh
Q 002045 460 GEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMD---GLDSRGQVVLIGATNRVDAIDGA 536 (976)
Q Consensus 460 g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld---~~~~~~~vivI~atn~~~~ld~a 536 (976)
+..+..+..+|..|+...|+||||-++|.|.....+ ....+++..+-..+. .......++||++|+..+.|++.
T Consensus 473 ~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg---ged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~ 549 (953)
T KOG0736|consen 473 SHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG---GEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPAD 549 (953)
T ss_pred chhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC---chhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHH
Confidence 999999999999999999999999999999854433 223344444444443 33456789999999999999999
Q ss_pred hcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCcc----c
Q 002045 537 LRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQV----Y 612 (976)
Q Consensus 537 L~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~~~----~ 612 (976)
+++ -|..+|.++.|+.++|.+||+.++....+.-+.. +..+|.++.||+.+++..++..+...+..+..... .
T Consensus 550 i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~-~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~ 626 (953)
T KOG0736|consen 550 IQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVN-LKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGL 626 (953)
T ss_pred HHH--hhhhhccCCCCCHHHHHHHHHHHHhccccchHHH-HHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccc
Confidence 999 6888999999999999999999998876544333 47899999999999999998877444444332222 1
Q ss_pred cCcccccccccceeEeehhhhhccccccccccccccc-ccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhh
Q 002045 613 TSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHRGATV-HSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCM 691 (976)
Q Consensus 613 ~~~~~~~~~~~~~~it~~df~~al~~i~p~~~r~~~~-~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~ 691 (976)
+..+...+......++++||..++..++......... ..|.+.|++++||++...++.+.| .-|+++++.|..
T Consensus 627 ~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTI---qlPL~hpeLfss--- 700 (953)
T KOG0736|consen 627 QEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTI---QLPLKHPELFSS--- 700 (953)
T ss_pred hhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHHHHh---cCcccChhhhhc---
Confidence 2223333344557799999999999887665555443 478899999999999999998884 447777766532
Q ss_pred ccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEecc
Q 002045 692 LSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIP 771 (976)
Q Consensus 692 ~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiD 771 (976)
.++.|.|||||||||||||++|||+|.++ .++|+++..++|+.+| +|++|+|+|++|++||.++|||||||
T Consensus 701 -------glrkRSGILLYGPPGTGKTLlAKAVATEc-sL~FlSVKGPELLNMY-VGqSE~NVR~VFerAR~A~PCVIFFD 771 (953)
T KOG0736|consen 701 -------GLRKRSGILLYGPPGTGKTLLAKAVATEC-SLNFLSVKGPELLNMY-VGQSEENVREVFERARSAAPCVIFFD 771 (953)
T ss_pred -------cccccceeEEECCCCCchHHHHHHHHhhc-eeeEEeecCHHHHHHH-hcchHHHHHHHHHHhhccCCeEEEec
Confidence 34557899999999999999999999999 7999999999999987 89999999999999999999999999
Q ss_pred ccchhHHH---------HHHHHHHHHHHHHhhCC--CCCCEEEEEecCCCcccCcCCCCCCcCCc--cEEEecCC-CHHH
Q 002045 772 QFNLWWEN---------AHEQLRAVLLTLLEELP--SHLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKP-STED 837 (976)
Q Consensus 772 Eid~l~~~---------~~~~~~~~l~~ll~~~~--~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P-~~~e 837 (976)
|+|++++. +-++++.+|++.||+|. +...|||||||||| |.||+ +.+|+|| +.++|.++ +.+.
T Consensus 772 ELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRP-DLLDp--ALLRPGRFDKLvyvG~~~d~es 848 (953)
T KOG0736|consen 772 ELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRP-DLLDP--ALLRPGRFDKLVYVGPNEDAES 848 (953)
T ss_pred cccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCc-cccCh--hhcCCCccceeEEecCCccHHH
Confidence 99999954 56899999999999997 57899999999999 99999 8888888 88889877 5566
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHH-HHHHHHHHh-Hhhhhhh----------
Q 002045 838 RSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPKASELKAKV-EAEQHALRR-LRMCLRD---------- 905 (976)
Q Consensus 838 r~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~sg~s~aelk~~~-ea~~~alre-Lr~~L~~---------- 905 (976)
+..+|+.+.++ -+...+++|.++|+..+ +.+++|++-++| .|.+.|+.+ .+.....
T Consensus 849 k~~vL~AlTrk----------FkLdedVdL~eiAk~cp--~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~ 916 (953)
T KOG0736|consen 849 KLRVLEALTRK----------FKLDEDVDLVEIAKKCP--PNMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESS 916 (953)
T ss_pred HHHHHHHHHHH----------ccCCCCcCHHHHHhhCC--cCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCc
Confidence 88999988884 45577899999998884 336779999999 888888765 2222221
Q ss_pred --hhccccccccccccccCCCCCCccch
Q 002045 906 --VCNRMLYDKRFSAFHYPVTDEDAPNY 931 (976)
Q Consensus 906 --il~~l~~~~~~~~F~~PV~~~~~pdY 931 (976)
++++.++-+.+..|.+.++..++..|
T Consensus 917 ~v~V~~eDflks~~~l~PSvS~~EL~~y 944 (953)
T KOG0736|consen 917 SVRVTMEDFLKSAKRLQPSVSEQELLRY 944 (953)
T ss_pred eEEEEHHHHHHHHHhcCCcccHHHHHHH
Confidence 23444555666677777777666544
No 6
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-56 Score=497.36 Aligned_cols=463 Identities=22% Similarity=0.287 Sum_probs=387.2
Q ss_pred ccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhh
Q 002045 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKW 458 (976)
Q Consensus 379 ~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~ 458 (976)
.+++-...+|++.-+....| +..+.+|||+||+|||||.||++++.++... ..+.+..++|+.+-..-
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~-~~~hv~~v~Cs~l~~~~ 475 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKD-LIAHVEIVSCSTLDGSS 475 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhccc-cceEEEEEechhccchh
Confidence 45666666666665533332 2345689999999999999999999999743 35677788999888777
Q ss_pred HhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhh--hhHHHHHHHHH-HHhhccC-CCCcEEEEecCCCccccc
Q 002045 459 VGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQE--QIHNSIVSTLL-ALMDGLD-SRGQVVLIGATNRVDAID 534 (976)
Q Consensus 459 ~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~--~~~~~~~~~Ll-~~ld~~~-~~~~vivI~atn~~~~ld 534 (976)
+......++.+|.++.+++|+||+||++|.|+...+..++ ......+..++ ..+..+. .+..+.||++.+....|+
T Consensus 476 ~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~ 555 (952)
T KOG0735|consen 476 LEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLN 555 (952)
T ss_pred HHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcC
Confidence 8888899999999999999999999999999974433322 22233334444 3333333 334568999999999999
Q ss_pred hhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCccccC
Q 002045 535 GALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTS 614 (976)
Q Consensus 535 ~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~~~~~~ 614 (976)
+.|.+|++|..++.+|.|+..+|.+||+..+.+.......+.++.++..|+||...|+..++..|...|+.....
T Consensus 556 ~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris----- 630 (952)
T KOG0735|consen 556 PLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERIS----- 630 (952)
T ss_pred hhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhc-----
Confidence 999999999999999999999999999999988765556666778999999999999999999999999854321
Q ss_pred cccccccccceeEeehhhhhcccccccccccccccccCC-CcccchhhhHH---HHHHHhhhhcccCCCCCCchHHHhhh
Q 002045 615 DDKFLIDVDSVTVEKYHFIEAMSTITPAAHRGATVHSRP-LSLVVAPCLQR---HLQKAMNYISDIFPPLGMSSELTKLC 690 (976)
Q Consensus 615 ~~~~~~~~~~~~it~~df~~al~~i~p~~~r~~~~~~~~-~~~~~i~~l~~---~l~~~~~~l~~i~~~~~~~~~~~~~~ 690 (976)
+... .++.++|..+|..+.|.++|++....+. +.|.+++|+.+ .|+++++| |.+++..|.+.
T Consensus 631 ------~~~k-lltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~------P~kyp~if~~~- 696 (952)
T KOG0735|consen 631 ------NGPK-LLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEW------PSKYPQIFANC- 696 (952)
T ss_pred ------cCcc-cchHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHHHHHHHHhc------cccchHHHhhC-
Confidence 1122 6899999999999999999999888665 99999999854 45555555 77778777654
Q ss_pred hccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEec
Q 002045 691 MLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYI 770 (976)
Q Consensus 691 ~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfi 770 (976)
|++.+.|+|||||||||||+||.|+|..+ .+.||++.+++|+++| +|.+|+++|.+|.+|+...||||||
T Consensus 697 --------plr~~~giLLyGppGcGKT~la~a~a~~~-~~~fisvKGPElL~Ky-IGaSEq~vR~lF~rA~~a~PCiLFF 766 (952)
T KOG0735|consen 697 --------PLRLRTGILLYGPPGCGKTLLASAIASNS-NLRFISVKGPELLSKY-IGASEQNVRDLFERAQSAKPCILFF 766 (952)
T ss_pred --------CcccccceEEECCCCCcHHHHHHHHHhhC-CeeEEEecCHHHHHHH-hcccHHHHHHHHHHhhccCCeEEEe
Confidence 66778999999999999999999999998 8999999999999997 8999999999999999999999999
Q ss_pred cccchhHHH-------HHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHH
Q 002045 771 PQFNLWWEN-------AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLF 841 (976)
Q Consensus 771 DEid~l~~~-------~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i 841 (976)
||+|++++. +.++++++|++.|++.+.-.+|+|+|+|.+| +.||+ |.+|+|| +.++.++|+..+|.+|
T Consensus 767 DEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRp-dliDp--ALLRpGRlD~~v~C~~P~~~eRl~i 843 (952)
T KOG0735|consen 767 DEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRP-DLIDP--ALLRPGRLDKLVYCPLPDEPERLEI 843 (952)
T ss_pred ccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCc-cccCH--hhcCCCccceeeeCCCCCcHHHHHH
Confidence 999999964 6799999999999999999999999999999 99999 9999998 8888999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHH-HHHHHHHHh
Q 002045 842 LGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPKASELKAKV-EAEQHALRR 898 (976)
Q Consensus 842 ~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~sg~s~aelk~~~-ea~~~alre 898 (976)
|+.+.+ ......++|++.||..|.+|+| ++|+.++ .|.+.++.+
T Consensus 844 l~~ls~----------s~~~~~~vdl~~~a~~T~g~tg---ADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 844 LQVLSN----------SLLKDTDVDLECLAQKTDGFTG---ADLQSLLYNAQLAAVHE 888 (952)
T ss_pred HHHHhh----------ccCCccccchHHHhhhcCCCch---hhHHHHHHHHHHHHHHH
Confidence 998877 3455778999999999966666 9999998 777777766
No 7
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-49 Score=469.21 Aligned_cols=455 Identities=38% Similarity=0.551 Sum_probs=392.6
Q ss_pred cccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhHhHHHHHHHHHHHHHHhc
Q 002045 397 FPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRN 476 (976)
Q Consensus 397 ~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~~ 476 (976)
.|+.+++.+..+++.++.+++++||||||||++++++|.. . ..++.+++....+++.|.++..++.+|..+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 75 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-G-----AEFLSINGPEILSKYVGESELRLRELFEEAEKL 75 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-c-----CcccccCcchhhhhhhhHHHHHHHHHHHHHHHh
Confidence 3677899999999999999999999999999999999998 2 233788999999999999999999999999999
Q ss_pred CCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHH
Q 002045 477 QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEA 556 (976)
Q Consensus 477 ~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~e 556 (976)
.|+++++|++|.+++.+..........++.+|+..++++. .+.+++++.+|.+..+++++++++||...+.+..|+...
T Consensus 76 ~~~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (494)
T COG0464 76 APSIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAG 154 (494)
T ss_pred CCCeEeechhhhcccCccccccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHH
Confidence 9999999999999999888666678899999999999988 555888899999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCccccCcccccccccceeEeehhhhhcc
Q 002045 557 RAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAM 636 (976)
Q Consensus 557 r~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al 636 (976)
+.+|+..+...+....+ ..+..++..+.|++++++..+|.++...++.+.. ........++..++..++
T Consensus 155 ~~ei~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~----------~~~~~~~~~~~~~~~~~l 223 (494)
T COG0464 155 RLEILQIHTRLMFLGPP-GTGKTLAARTVGKSGADLGALAKEAALRELRRAI----------DLVGEYIGVTEDDFEEAL 223 (494)
T ss_pred HHHHHHHHHhcCCCccc-ccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh----------ccCcccccccHHHHHHHH
Confidence 99999998887766543 3357899999999999999999999999998853 112234568889999999
Q ss_pred cccccccccccccccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcH
Q 002045 637 STITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGV 716 (976)
Q Consensus 637 ~~i~p~~~r~~~~~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGK 716 (976)
..+.+. +......+.+.|.+++++....+++.+.+ ..++.+++.+.+.++. ++.|+||+|||||||
T Consensus 224 ~~~~~~--~~~~~~~~~v~~~diggl~~~k~~l~e~v---~~~~~~~e~~~~~~~~---------~~~giLl~GpPGtGK 289 (494)
T COG0464 224 KKVLPS--RGVLFEDEDVTLDDIGGLEEAKEELKEAI---ETPLKRPELFRKLGLR---------PPKGVLLYGPPGTGK 289 (494)
T ss_pred HhcCcc--cccccCCCCcceehhhcHHHHHHHHHHHH---HhHhhChHHHHhcCCC---------CCCeeEEECCCCCCH
Confidence 999987 67777888999999988866555544442 1256667776665432 256999999999999
Q ss_pred hhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHHH-------HHHHHHHHH
Q 002045 717 DHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENA-------HEQLRAVLL 789 (976)
Q Consensus 717 T~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~-------~~~~~~~l~ 789 (976)
|++|+++|.++ +.+|++++.++++++| +|++|++++++|..|++.+||||||||||+|++.. ..+++++|+
T Consensus 290 T~lAkava~~~-~~~fi~v~~~~l~sk~-vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL 367 (494)
T COG0464 290 TLLAKAVALES-RSRFISVKGSELLSKW-VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLL 367 (494)
T ss_pred HHHHHHHHhhC-CCeEEEeeCHHHhccc-cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHH
Confidence 99999999997 8999999999999997 89999999999999999999999999999999652 258999999
Q ss_pred HHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCC
Q 002045 790 TLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSL 867 (976)
Q Consensus 790 ~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl 867 (976)
+.|++++...+|+||+|||+| +.||+ +.+|++| .+++|++|+..+|.+||+.++... ......++++
T Consensus 368 ~~~d~~e~~~~v~vi~aTN~p-~~ld~--a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~--------~~~~~~~~~~ 436 (494)
T COG0464 368 TELDGIEKAEGVLVIAATNRP-DDLDP--ALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDK--------KPPLAEDVDL 436 (494)
T ss_pred HHhcCCCccCceEEEecCCCc-cccCH--hhcccCccceEeecCCCCHHHHHHHHHHHhccc--------CCcchhhhhH
Confidence 999999999999999999999 99999 8888444 899999999999999999999831 1123678999
Q ss_pred CCCCCCCCCCCCCchhHHHHHH-HHHHHHHHhH
Q 002045 868 PELPKVPTVESGPKASELKAKV-EAEQHALRRL 899 (976)
Q Consensus 868 ~~La~~~~~~sg~s~aelk~~~-ea~~~alreL 899 (976)
..|++.+++++| ++|..+| ++.+.++++.
T Consensus 437 ~~l~~~t~~~sg---adi~~i~~ea~~~~~~~~ 466 (494)
T COG0464 437 EELAEITEGYSG---ADIAALVREAALEALREA 466 (494)
T ss_pred HHHHHHhcCCCH---HHHHHHHHHHHHHHHHHh
Confidence 999999966555 9999999 8888888875
No 8
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-48 Score=411.45 Aligned_cols=248 Identities=45% Similarity=0.747 Sum_probs=231.2
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecc
Q 002045 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (976)
Q Consensus 372 ~~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~ 451 (976)
..|.+++++|+|+++++++|++.|.+||.+|++|..+|+.||+|||||||||||||+||+|+|+... +.|+.+.+
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~-----AtFIrvvg 218 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD-----ATFIRVVG 218 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC-----ceEEEecc
Confidence 3478999999999999999999999999999999999999999999999999999999999999985 89999999
Q ss_pred hhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCh---hhhhHHHHHHHHHHHhhccCCCCcEEEEecCC
Q 002045 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (976)
Q Consensus 452 ~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~---~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn 528 (976)
++++.+|+|++...++.+|..|+..+||||||||||+++.+|... ++..-++.+-+||+.||++...++|-||+|||
T Consensus 219 SElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATN 298 (406)
T COG1222 219 SELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATN 298 (406)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecC
Confidence 999999999999999999999999999999999999999988554 33445677778889999999999999999999
Q ss_pred CccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 002045 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (976)
Q Consensus 529 ~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~ 608 (976)
+++.|||||+|||||++.|+||+|+.+.|.+||++|.+++.+..+.++ +.||..+.|+||+||+++|.+|.+.|++...
T Consensus 299 R~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~-e~la~~~~g~sGAdlkaictEAGm~AiR~~R 377 (406)
T COG1222 299 RPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL-ELLARLTEGFSGADLKAICTEAGMFAIRERR 377 (406)
T ss_pred CccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH-HHHHHhcCCCchHHHHHHHHHHhHHHHHhcc
Confidence 999999999999999999999999999999999999999998877775 8999999999999999999999999999764
Q ss_pred CccccCcccccccccceeEeehhhhhccccccc
Q 002045 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITP 641 (976)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~it~~df~~al~~i~p 641 (976)
. .++++||..|...+..
T Consensus 378 ~----------------~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 378 D----------------EVTMEDFLKAVEKVVK 394 (406)
T ss_pred C----------------eecHHHHHHHHHHHHh
Confidence 3 4899999999877654
No 9
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-47 Score=425.24 Aligned_cols=287 Identities=39% Similarity=0.644 Sum_probs=259.4
Q ss_pred hHHhhhcccccCCCCCCCCCCCCcccCCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChH
Q 002045 347 LAALTSGIQTAGPSSKGGADIQPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGK 426 (976)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGK 426 (976)
+.++..++.+.+|+.++.. +..-|.|+|+||+|+++++.+|..+|.+|+++|++|+.+|+..|.||||||||||||
T Consensus 483 ~eDF~~Al~~iQPSakREG----F~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGK 558 (802)
T KOG0733|consen 483 FEDFEEALSKIQPSAKREG----FATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGK 558 (802)
T ss_pred HHHHHHHHHhcCcchhccc----ceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccH
Confidence 5677788888888876543 333489999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEEecchhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHH
Q 002045 427 TLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVS 506 (976)
Q Consensus 427 T~laralA~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~ 506 (976)
|+||+|+|++.+ .+|+.+.|.+++++|+|+++..++.+|..|+..+||||||||||+|+|.|+........++++
T Consensus 559 TLlAKAVANEag-----~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvN 633 (802)
T KOG0733|consen 559 TLLAKAVANEAG-----ANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVN 633 (802)
T ss_pred HHHHHHHhhhcc-----CceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHH
Confidence 999999999996 899999999999999999999999999999999999999999999999999998888999999
Q ss_pred HHHHHhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHc
Q 002045 507 TLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW--KQPPSRELKSELAASC 584 (976)
Q Consensus 507 ~Ll~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~--~~~~~~~~l~~lA~~t 584 (976)
+||..||++..+.+|+||++||+|+.||||++|||||+..+++++|+.++|.+||+.+++.. .+..+.+ ++.||..+
T Consensus 634 qLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVd-l~eia~~~ 712 (802)
T KOG0733|consen 634 QLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVD-LDEIARNT 712 (802)
T ss_pred HHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccC-HHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999954 3444444 48899876
Q ss_pred c--CCCHHHHHHHHHHHHHHHHHhhCCccccCcccccccccceeEeehhhhhccccccccc
Q 002045 585 V--GYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAA 643 (976)
Q Consensus 585 ~--G~s~~dI~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~i~p~~ 643 (976)
. ||+|+||..||++|...|+++....+..+.....+......++..||.+|++.+.|+.
T Consensus 713 ~c~gftGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv 773 (802)
T KOG0733|consen 713 KCEGFTGADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSV 773 (802)
T ss_pred cccCCchhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCc
Confidence 6 9999999999999999999998776666665544444456688899999999999875
No 10
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-47 Score=412.50 Aligned_cols=441 Identities=27% Similarity=0.434 Sum_probs=340.1
Q ss_pred cCCCCCccc--ccChHHHHHHH-HHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEE
Q 002045 372 VDESVSFDD--IGGLSEYIDAL-KEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM 448 (976)
Q Consensus 372 ~~~~~~~~~--i~G~~~~k~~l-~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~ 448 (976)
+.|...|++ |+|++.....| ++++..-+.-|++.+++|+++-+|+|||||||||||++||.|.+.|+.... -.
T Consensus 212 i~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNAreP----KI 287 (744)
T KOG0741|consen 212 INPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREP----KI 287 (744)
T ss_pred cCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCC----cc
Confidence 446778887 78999876655 455555566799999999999999999999999999999999999975443 35
Q ss_pred ecchhHHhhhHhHHHHHHHHHHHHHHhc--------CCcEEEEccccccCCCCCChh--hhhHHHHHHHHHHHhhccCCC
Q 002045 449 RKGADVLSKWVGEAERQLKLLFEEAQRN--------QPSIIFFDEIDGLAPVRSSKQ--EQIHNSIVSTLLALMDGLDSR 518 (976)
Q Consensus 449 ~~~~~l~~~~~g~~~~~l~~~f~~a~~~--------~p~VL~iDEid~L~~~r~~~~--~~~~~~~~~~Ll~~ld~~~~~ 518 (976)
+++.+++++|+|+++.+++.+|..|... .=.||++||||++|..|++.. ...+..++++||.-||+...-
T Consensus 288 VNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqL 367 (744)
T KOG0741|consen 288 VNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQL 367 (744)
T ss_pred cCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhh
Confidence 7999999999999999999999888641 124999999999999886643 467889999999999999999
Q ss_pred CcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHHccCCCHHHHHH
Q 002045 519 GQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWK----QPPSRELKSELAASCVGYCGADLKA 594 (976)
Q Consensus 519 ~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~----~~~~~~~l~~lA~~t~G~s~~dI~~ 594 (976)
++++||+.||+.+.||.||+|||||...+++.+|+...|.+||++|.+.+. +..+.+ +.+||..|..|||++|+.
T Consensus 368 NNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVd-l~elA~lTKNfSGAEleg 446 (744)
T KOG0741|consen 368 NNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVD-LKELAALTKNFSGAELEG 446 (744)
T ss_pred hcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcC-HHHHHHHhcCCchhHHHH
Confidence 999999999999999999999999999999999999999999999987753 233444 489999999999999999
Q ss_pred HHHHHHHHHHHhhCCccccCcccccccccceeEeehhhhhcccccccccccccccccC-----CCcccchhhhHHHHHHH
Q 002045 595 LCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHRGATVHSR-----PLSLVVAPCLQRHLQKA 669 (976)
Q Consensus 595 l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~i~p~~~r~~~~~~~-----~~~~~~i~~l~~~l~~~ 669 (976)
+++.|...|+.+....- ..........+...|+..||..||..++|+.-........ -+.|.. -..+.++.-
T Consensus 447 lVksA~S~A~nR~vk~~-~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~--~v~~il~~G 523 (744)
T KOG0741|consen 447 LVKSAQSFAMNRHVKAG-GKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGP--PVTRILDDG 523 (744)
T ss_pred HHHHHHHHHHHhhhccC-cceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeecc--cHHHHHhhH
Confidence 99999999998865432 1122223345677899999999999999975433211000 011110 011122222
Q ss_pred hhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCCh
Q 002045 670 MNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTP 749 (976)
Q Consensus 670 ~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~ 749 (976)
+.+++++..+ ...|+ ..+||.||||+|||.||--||... .+||+.+-.++-+.+++....
T Consensus 524 ~llv~qvk~s----------------~~s~l---vSvLl~Gp~~sGKTaLAA~iA~~S-~FPFvKiiSpe~miG~sEsaK 583 (744)
T KOG0741|consen 524 KLLVQQVKNS----------------ERSPL---VSVLLEGPPGSGKTALAAKIALSS-DFPFVKIISPEDMIGLSESAK 583 (744)
T ss_pred HHHHHHhhcc----------------ccCcc---eEEEEecCCCCChHHHHHHHHhhc-CCCeEEEeChHHccCccHHHH
Confidence 2221111000 01121 369999999999999999999996 899999999988877654455
Q ss_pred HHHHHHHHHHHHhcCCceEeccccchhH------HHHHHHHHHHHHHHHhhCCC-CCCEEEEEecCCCcccCcC-CCCCC
Q 002045 750 EEALVHIFGEARRTTPSILYIPQFNLWW------ENAHEQLRAVLLTLLEELPS-HLPILLLGSSSVPLAEVEG-DPSTV 821 (976)
Q Consensus 750 e~~~~~~f~~a~~~~p~ilfiDEid~l~------~~~~~~~~~~l~~ll~~~~~-~~~v~vi~ttn~~~~~Ld~-~~~~~ 821 (976)
...++.+|..|++..-+||++|+|+.|+ +.++..++++|+.+|+..++ +...+|+|||++- ..|.+ .+...
T Consensus 584 c~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~-~vL~~m~i~~~ 662 (744)
T KOG0741|consen 584 CAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRR-EVLQEMGILDC 662 (744)
T ss_pred HHHHHHHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHH-HHHHHcCHHHh
Confidence 5679999999999999999999999997 55788899999999998876 7789999999987 66665 44555
Q ss_pred cCCccEEEecCCCH-HHHHHHHH
Q 002045 822 FPLRSVYQVEKPST-EDRSLFLG 843 (976)
Q Consensus 822 ~~~r~~i~v~~P~~-~er~~i~~ 843 (976)
|. ..+.|+.-+. ++..+++.
T Consensus 663 F~--~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 663 FS--STIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred hh--heeecCccCchHHHHHHHH
Confidence 55 5666654433 55555554
No 11
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-46 Score=424.05 Aligned_cols=269 Identities=43% Similarity=0.701 Sum_probs=246.6
Q ss_pred hhhcccccCCCCCCCCCCCCcccCCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHH
Q 002045 350 LTSGIQTAGPSSKGGADIQPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLI 429 (976)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~l 429 (976)
+........|+..+...+ ..+.++|+||+|++++|.+|++.|.||+.+|+.|.++|+.||+|||||||||||||++
T Consensus 409 ~~~A~~~i~psa~Re~~v----e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~l 484 (693)
T KOG0730|consen 409 FQEALMGIRPSALREILV----EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLL 484 (693)
T ss_pred HHHHHhcCCchhhhheec----cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHH
Confidence 334444556665554432 3389999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCcEEEEEecchhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHH
Q 002045 430 ARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLL 509 (976)
Q Consensus 430 aralA~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll 509 (976)
|+++|++++ .+|+.+.+.+++++|+|+++..++.+|+.|+..+||||||||||+++..|++...+...+++++||
T Consensus 485 AkalAne~~-----~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLL 559 (693)
T KOG0730|consen 485 AKALANEAG-----MNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLL 559 (693)
T ss_pred HHHHhhhhc-----CCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHH
Confidence 999999996 899999999999999999999999999999999999999999999999998777788999999999
Q ss_pred HHhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCH
Q 002045 510 ALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCG 589 (976)
Q Consensus 510 ~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~ 589 (976)
+.|||+....+|+||++||+|+.||+||+|||||++.|+||+|+.+.|++||+.+++++++..+.++ ++||..|.||||
T Consensus 560 tEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl-~~La~~T~g~SG 638 (693)
T KOG0730|consen 560 TEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDL-EELAQATEGYSG 638 (693)
T ss_pred HHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccH-HHHHHHhccCCh
Confidence 9999999999999999999999999999999999999999999999999999999999998877554 899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCccccCcccccccccceeEeehhhhhcccccccc
Q 002045 590 ADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPA 642 (976)
Q Consensus 590 ~dI~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~i~p~ 642 (976)
+||..+|++|+..|+++... ...|+..||.+|++..+++
T Consensus 639 Ael~~lCq~A~~~a~~e~i~--------------a~~i~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 639 AEIVAVCQEAALLALRESIE--------------ATEITWQHFEEALKAVRPS 677 (693)
T ss_pred HHHHHHHHHHHHHHHHHhcc--------------cccccHHHHHHHHHhhccc
Confidence 99999999999999998643 3458889999999888765
No 12
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-43 Score=396.33 Aligned_cols=285 Identities=36% Similarity=0.608 Sum_probs=247.8
Q ss_pred hHHhhhcccccCCCCCCCCCCCCcccCCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChH
Q 002045 347 LAALTSGIQTAGPSSKGGADIQPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGK 426 (976)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGK 426 (976)
+....+.+++....+.|...+ |+|+|+||+|++++|.+|.+.+..||.+|++|.. |+++..||||||||||||
T Consensus 646 f~kals~~~~~fs~aiGAPKI------PnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGK 718 (953)
T KOG0736|consen 646 FDKALSRLQKEFSDAIGAPKI------PNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGK 718 (953)
T ss_pred HHHHHHHHHHhhhhhcCCCCC------CccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCch
Confidence 333444455554444444333 7999999999999999999999999999999985 788899999999999999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEEecchhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCh--hhhhHHHH
Q 002045 427 TLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK--QEQIHNSI 504 (976)
Q Consensus 427 T~laralA~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~--~~~~~~~~ 504 (976)
|++|+|+|.++. ..|+++.|.+++.+|+|+++++++.+|+.|+..+||||||||+|+|+|.|+.. +++...++
T Consensus 719 TLlAKAVATEcs-----L~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRV 793 (953)
T KOG0736|consen 719 TLLAKAVATECS-----LNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRV 793 (953)
T ss_pred HHHHHHHHhhce-----eeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHH
Confidence 999999999996 99999999999999999999999999999999999999999999999999665 44678999
Q ss_pred HHHHHHHhhccC--CCCcEEEEecCCCccccchhhcCCCCCccccCCCCC-CHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 002045 505 VSTLLALMDGLD--SRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLP-GCEARAEILDIHTRKWKQPPSRELKSELA 581 (976)
Q Consensus 505 ~~~Ll~~ld~~~--~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P-~~~er~~Il~~~l~~~~~~~~~~~l~~lA 581 (976)
+++||..||++. ....|+||+|||+|+.|||+|+|||||++.+++.++ +.+.+..||+...+++.+..+.++ .++|
T Consensus 794 VSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL-~eiA 872 (953)
T KOG0736|consen 794 VSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDL-VEIA 872 (953)
T ss_pred HHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCH-HHHH
Confidence 999999999998 567899999999999999999999999999999988 557788999999999999988887 5788
Q ss_pred HHc-cCCCHHHHHHHHHHHHHHHHHhhCCccccCccc-ccccccceeEeehhhhhcccccccccc
Q 002045 582 ASC-VGYCGADLKALCTEAAIRAFREKYPQVYTSDDK-FLIDVDSVTVEKYHFIEAMSTITPAAH 644 (976)
Q Consensus 582 ~~t-~G~s~~dI~~l~~~A~~~a~~~~~~~~~~~~~~-~~~~~~~~~it~~df~~al~~i~p~~~ 644 (976)
+.| ..|||+|+-+||..|++.|+.|....+...... ...+...+.|+++||..++++++|+..
T Consensus 873 k~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS 937 (953)
T KOG0736|consen 873 KKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVS 937 (953)
T ss_pred hhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCccc
Confidence 877 469999999999999999999987655443111 223456788999999999999998753
No 13
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-42 Score=363.11 Aligned_cols=266 Identities=37% Similarity=0.614 Sum_probs=234.8
Q ss_pred cccCCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEe
Q 002045 370 LQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR 449 (976)
Q Consensus 370 ~~~~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~ 449 (976)
++..|.++|+||+|+.++|+-|+++|.+|+.+|++|..+ .+|+++||++||||||||+||+|||.+++ ..||.|
T Consensus 203 l~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~-----tTFFNV 276 (491)
T KOG0738|consen 203 LQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECG-----TTFFNV 276 (491)
T ss_pred hccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhc-----CeEEEe
Confidence 344578999999999999999999999999999999986 48999999999999999999999999996 899999
Q ss_pred cchhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhh-hhHHHHHHHHHHHhhccCCC----CcEEEE
Q 002045 450 KGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQE-QIHNSIVSTLLALMDGLDSR----GQVVLI 524 (976)
Q Consensus 450 ~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~-~~~~~~~~~Ll~~ld~~~~~----~~vivI 524 (976)
+.+.+.++|-|++++.++.+|+.|+.++|++|||||||+|+..|++.++ ..+.++.+.||..||++... .-|+|+
T Consensus 277 SsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVL 356 (491)
T KOG0738|consen 277 SSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVL 356 (491)
T ss_pred chhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEE
Confidence 9999999999999999999999999999999999999999999877654 56788999999999998654 238899
Q ss_pred ecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q 002045 525 GATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAF 604 (976)
Q Consensus 525 ~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~ 604 (976)
++||.||.||.||+| ||...|++|+|+.+.|..+|+..++......+.. ++.||+.+.||+|+||.++|++|.+.++
T Consensus 357 AATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~-~~~lae~~eGySGaDI~nvCreAsm~~m 433 (491)
T KOG0738|consen 357 AATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVN-LEDLAERSEGYSGADITNVCREASMMAM 433 (491)
T ss_pred eccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCcc-HHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 999999999999999 9999999999999999999999999887766555 4889999999999999999999999999
Q ss_pred HhhCCccccCccccccc-ccceeEeehhhhhcccccccccc
Q 002045 605 REKYPQVYTSDDKFLID-VDSVTVEKYHFIEAMSTITPAAH 644 (976)
Q Consensus 605 ~~~~~~~~~~~~~~~~~-~~~~~it~~df~~al~~i~p~~~ 644 (976)
++....+.......+.. .....++..||..|+..+.|+..
T Consensus 434 RR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 434 RRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred HHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCC
Confidence 98765444333322211 12355899999999999988753
No 14
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-40 Score=362.05 Aligned_cols=244 Identities=38% Similarity=0.595 Sum_probs=226.3
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
.+++|+|+-|.+++|++|.|+|.+ |+.|..|.++|-+-|+||||+||||||||+||||+|.+.+ ++|+...+++
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~-----VPFF~~sGSE 372 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG-----VPFFYASGSE 372 (752)
T ss_pred cccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC-----CCeEeccccc
Confidence 478999999999999999999999 9999999999999999999999999999999999999985 9999999999
Q ss_pred HHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCcccc
Q 002045 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAI 533 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~~l 533 (976)
|-..|+|....+++.+|..|+..+||||||||||++..+|.........+.+++||..||++..+..||||++||.|+.|
T Consensus 373 FdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~L 452 (752)
T KOG0734|consen 373 FDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEAL 452 (752)
T ss_pred hhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhh
Confidence 99999999999999999999999999999999999999998877778899999999999999999999999999999999
Q ss_pred chhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCcccc
Q 002045 534 DGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYT 613 (976)
Q Consensus 534 d~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~~~~~ 613 (976)
|+||.|||||+++|.+|.||...|.+||+.|+.+..+.-+.+. .-||.-|.||+|+||.|+++.|++.|......
T Consensus 453 D~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~-~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~---- 527 (752)
T KOG0734|consen 453 DKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDP-KIIARGTPGFSGADLANLVNQAALKAAVDGAE---- 527 (752)
T ss_pred hHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCH-hHhccCCCCCchHHHHHHHHHHHHHHHhcCcc----
Confidence 9999999999999999999999999999999999877665554 67999999999999999999999999886543
Q ss_pred CcccccccccceeEeehhhhhcccccc
Q 002045 614 SDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (976)
Q Consensus 614 ~~~~~~~~~~~~~it~~df~~al~~i~ 640 (976)
.+++.++..|-..+.
T Consensus 528 ------------~VtM~~LE~akDrIl 542 (752)
T KOG0734|consen 528 ------------MVTMKHLEFAKDRIL 542 (752)
T ss_pred ------------cccHHHHhhhhhhee
Confidence 366667666655543
No 15
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-38 Score=316.67 Aligned_cols=244 Identities=40% Similarity=0.639 Sum_probs=223.3
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
|.++..||+|++-+|++|++++.+||.+.++|..+|+.||+|||||||||||||+||+|+|+... ..|+.+.+++
T Consensus 150 pdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~-----a~firvvgse 224 (408)
T KOG0727|consen 150 PDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT-----AAFIRVVGSE 224 (408)
T ss_pred CCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc-----hheeeeccHH
Confidence 78999999999999999999999999999999999999999999999999999999999999874 7899999999
Q ss_pred HHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChh---hhhHHHHHHHHHHHhhccCCCCcEEEEecCCCc
Q 002045 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ---EQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~---~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~ 530 (976)
|+.+|+|+....++.+|..|+.++|+||||||||+++.+|-..+ +....+++-.||+.|+++....+|-||++||+.
T Consensus 225 fvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnra 304 (408)
T KOG0727|consen 225 FVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRA 304 (408)
T ss_pred HHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcc
Confidence 99999999999999999999999999999999999998884443 344567888899999999999999999999999
Q ss_pred cccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCc
Q 002045 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQ 610 (976)
Q Consensus 531 ~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~~ 610 (976)
+.|||+|+||||+++.|+||+|+..+++-++...+.++.+..+.++ +.+..+-...++++|.++|++|.+.|++.+.
T Consensus 305 dtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdl-e~~v~rpdkis~adi~aicqeagm~avr~nr-- 381 (408)
T KOG0727|consen 305 DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDL-EDLVARPDKISGADINAICQEAGMLAVRENR-- 381 (408)
T ss_pred cccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCH-HHHhcCccccchhhHHHHHHHHhHHHHHhcc--
Confidence 9999999999999999999999999999999999999988877765 7788888899999999999999999999754
Q ss_pred cccCcccccccccceeEeehhhhhccccc
Q 002045 611 VYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (976)
Q Consensus 611 ~~~~~~~~~~~~~~~~it~~df~~al~~i 639 (976)
-.+...||..+....
T Consensus 382 --------------yvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 382 --------------YVVLQKDFEKAYKTV 396 (408)
T ss_pred --------------eeeeHHHHHHHHHhh
Confidence 246777888776544
No 16
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-38 Score=337.05 Aligned_cols=222 Identities=20% Similarity=0.243 Sum_probs=199.7
Q ss_pred ccccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhh
Q 002045 648 TVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHEL 727 (976)
Q Consensus 648 ~~~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l 727 (976)
....+.+++.+++||+.+++++.+. |.-|+.+++.|.++|+.+ |+|+|||||||||||+||+|+|+..
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~---VELPL~~PElF~~~GI~P---------PKGVLLYGPPGTGKTLLAkAVA~~T 209 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREV---VELPLKNPELFEELGIDP---------PKGVLLYGPPGTGKTLLAKAVANQT 209 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHH---hcccccCHHHHHHcCCCC---------CCceEeeCCCCCcHHHHHHHHHhcc
Confidence 3457889999999999999998887 344899999999999744 6899999999999999999999998
Q ss_pred cCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH-------HHHHHHHHHHHHHhhCCC---
Q 002045 728 EKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLEELPS--- 797 (976)
Q Consensus 728 ~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~-------~~~~~~~~l~~ll~~~~~--- 797 (976)
...|+.+..++|+.+| +|+....++.+|..|+..+||||||||||++... ...++.+++++||.+|++
T Consensus 210 -~AtFIrvvgSElVqKY-iGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 210 -DATFIRVVGSELVQKY-IGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred -CceEEEeccHHHHHHH-hccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 7899999999999997 8999999999999999999999999999999843 446777888888777754
Q ss_pred CCCEEEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCC
Q 002045 798 HLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPT 875 (976)
Q Consensus 798 ~~~v~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~ 875 (976)
..+|=||+|||++ +.||| |.+|+|| ..|+|++|+.+.|.+||++|.. .....++++|+.|+..++
T Consensus 288 ~~nvKVI~ATNR~-D~LDP--ALLRPGR~DRkIEfplPd~~gR~~Il~IHtr----------kM~l~~dvd~e~la~~~~ 354 (406)
T COG1222 288 RGNVKVIMATNRP-DILDP--ALLRPGRFDRKIEFPLPDEEGRAEILKIHTR----------KMNLADDVDLELLARLTE 354 (406)
T ss_pred CCCeEEEEecCCc-cccCh--hhcCCCcccceeecCCCCHHHHHHHHHHHhh----------hccCccCcCHHHHHHhcC
Confidence 7799999999999 99999 9999998 9999999999999999999998 477788999999999996
Q ss_pred CCCCCchhHHHHHH-HHHHHHHHhH
Q 002045 876 VESGPKASELKAKV-EAEQHALRRL 899 (976)
Q Consensus 876 ~~sg~s~aelk~~~-ea~~~alreL 899 (976)
++|| |+|+++| +|-+.|+|+-
T Consensus 355 g~sG---AdlkaictEAGm~AiR~~ 376 (406)
T COG1222 355 GFSG---ADLKAICTEAGMFAIRER 376 (406)
T ss_pred CCch---HHHHHHHHHHhHHHHHhc
Confidence 6666 9999999 9999999983
No 17
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-38 Score=326.09 Aligned_cols=246 Identities=39% Similarity=0.675 Sum_probs=222.4
Q ss_pred CCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecch
Q 002045 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (976)
Q Consensus 373 ~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~ 452 (976)
.|.-++.||+|++.++++|++.|.+||.+|++|..+|+.||+||+|||+||||||+||+|+|+... ..|+.+-++
T Consensus 179 aP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTS-----ATFlRvvGs 253 (440)
T KOG0726|consen 179 APQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTS-----ATFLRVVGS 253 (440)
T ss_pred CchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccc-----hhhhhhhhH
Confidence 367789999999999999999999999999999999999999999999999999999999999885 778889999
Q ss_pred hHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCC---hhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCC
Q 002045 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSS---KQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (976)
Q Consensus 453 ~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~---~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~ 529 (976)
+++.+|.|+....++.+|..|..++|+|+||||||++..+|-. +++....+.+-.||+.++++.+++.|-||++||+
T Consensus 254 eLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnr 333 (440)
T KOG0726|consen 254 ELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNR 333 (440)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccc
Confidence 9999999999999999999999999999999999999988733 3334455666678888999999999999999999
Q ss_pred ccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCC
Q 002045 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (976)
Q Consensus 530 ~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~ 609 (976)
.+.|||+|.||||+++.|+|+.|+...+..||.+|...+.+.-+..+ +.+......+||+||.++|.+|.+.|+++..
T Consensus 334 ie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnl-e~li~~kddlSGAdIkAictEaGllAlRerR- 411 (440)
T KOG0726|consen 334 IETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNL-EELIMTKDDLSGADIKAICTEAGLLALRERR- 411 (440)
T ss_pred ccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccH-HHHhhcccccccccHHHHHHHHhHHHHHHHH-
Confidence 99999999999999999999999999999999999999887766654 6777777889999999999999999999764
Q ss_pred ccccCcccccccccceeEeehhhhhcccccc
Q 002045 610 QVYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (976)
Q Consensus 610 ~~~~~~~~~~~~~~~~~it~~df~~al~~i~ 640 (976)
..++.+||..|.+.+-
T Consensus 412 ---------------m~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 412 ---------------MKVTMEDFKKAKEKVL 427 (440)
T ss_pred ---------------hhccHHHHHHHHHHHH
Confidence 3588889988776553
No 18
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-37 Score=313.24 Aligned_cols=245 Identities=39% Similarity=0.679 Sum_probs=222.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
|.-+++-|+|++.++.+|++.+.+|.++|++|..+|+..|+|+|||||||||||++|+++|+... +.|+.+++++
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~-----c~firvsgse 216 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-----CTFIRVSGSE 216 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc-----eEEEEechHH
Confidence 45567779999999999999999999999999999999999999999999999999999999874 8999999999
Q ss_pred HHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChh---hhhHHHHHHHHHHHhhccCCCCcEEEEecCCCc
Q 002045 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ---EQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~---~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~ 530 (976)
++.+|+|+....++.+|-.|+.++|+|||+||||++...|...+ +....+.+-.||+.++++....++-||++||+.
T Consensus 217 lvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnri 296 (404)
T KOG0728|consen 217 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRI 296 (404)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccc
Confidence 99999999999999999999999999999999999998774433 334456677788889999999999999999999
Q ss_pred cccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCc
Q 002045 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQ 610 (976)
Q Consensus 531 ~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~~ 610 (976)
+-|||+|+||||+++.|+||+|+.+.|.+||++|.+++++.-..++ ..+|+...|.+|+++..+|.+|.+.|+++..
T Consensus 297 dild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l-~kiaekm~gasgaevk~vcteagm~alrerr-- 373 (404)
T KOG0728|consen 297 DILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINL-RKIAEKMPGASGAEVKGVCTEAGMYALRERR-- 373 (404)
T ss_pred ccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCH-HHHHHhCCCCccchhhhhhhhhhHHHHHHhh--
Confidence 9999999999999999999999999999999999999887655554 7899999999999999999999999999753
Q ss_pred cccCcccccccccceeEeehhhhhcccccc
Q 002045 611 VYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (976)
Q Consensus 611 ~~~~~~~~~~~~~~~~it~~df~~al~~i~ 640 (976)
+.+|++||.-|+..+-
T Consensus 374 --------------vhvtqedfemav~kvm 389 (404)
T KOG0728|consen 374 --------------VHVTQEDFEMAVAKVM 389 (404)
T ss_pred --------------ccccHHHHHHHHHHHH
Confidence 4589999998776553
No 19
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-38 Score=366.05 Aligned_cols=247 Identities=38% Similarity=0.624 Sum_probs=228.2
Q ss_pred CCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecch
Q 002045 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (976)
Q Consensus 373 ~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~ 452 (976)
+..|+|.|++|++++|.+|.|+|.+ |++|+.|.++|+..|+|+||+||||||||+||+|+|.+.+ ++|+.++++
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~svSGS 378 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSVSGS 378 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----CceeeechH
Confidence 3569999999999999999999999 9999999999999999999999999999999999999996 999999999
Q ss_pred hHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCC----hhhhhHHHHHHHHHHHhhccCCCCcEEEEecCC
Q 002045 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSS----KQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (976)
Q Consensus 453 ~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~----~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn 528 (976)
+|+..++|....+++.+|..|+...||||||||||++...|++ .........+++||..||++.....|||+++||
T Consensus 379 EFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tn 458 (774)
T KOG0731|consen 379 EFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATN 458 (774)
T ss_pred HHHHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccC
Confidence 9999999999999999999999999999999999999988842 344557789999999999999999999999999
Q ss_pred CccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 002045 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (976)
Q Consensus 529 ~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~ 608 (976)
+++.||++|+|||||++.|.++.|+...|.+|++.|++...+..+...+..+|.+|.||+|+||.++|++|++.|+++..
T Consensus 459 r~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~ 538 (774)
T KOG0731|consen 459 RPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL 538 (774)
T ss_pred CccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999998875555566799999999999999999999999999764
Q ss_pred CccccCcccccccccceeEeehhhhhccccccc
Q 002045 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITP 641 (976)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~it~~df~~al~~i~p 641 (976)
. .|+..||..|++.+..
T Consensus 539 ~----------------~i~~~~~~~a~~Rvi~ 555 (774)
T KOG0731|consen 539 R----------------EIGTKDLEYAIERVIA 555 (774)
T ss_pred C----------------ccchhhHHHHHHHHhc
Confidence 3 3778888888886553
No 20
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-38 Score=325.39 Aligned_cols=227 Identities=37% Similarity=0.662 Sum_probs=215.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
|.|.|+||+|++.+|+.|+++|.+|+.+|.+|.... .|+++|||||||||||++||+|+|.+.+ ..|++++.++
T Consensus 128 PNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR-~PwrgiLLyGPPGTGKSYLAKAVATEAn-----STFFSvSSSD 201 (439)
T KOG0739|consen 128 PNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKR-KPWRGILLYGPPGTGKSYLAKAVATEAN-----STFFSVSSSD 201 (439)
T ss_pred CCCchhhhccchhHHHHHHhheeecccchhhhcCCC-CcceeEEEeCCCCCcHHHHHHHHHhhcC-----CceEEeehHH
Confidence 789999999999999999999999999999998753 7899999999999999999999999985 7899999999
Q ss_pred HHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCC-CCcEEEEecCCCccc
Q 002045 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS-RGQVVLIGATNRVDA 532 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~-~~~vivI~atn~~~~ 532 (976)
++++|+|+++..++++|+.|+.+.|+||||||||.||+.|+........++...||..|++... ...|+|+++||.||.
T Consensus 202 LvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~ 281 (439)
T KOG0739|consen 202 LVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWV 281 (439)
T ss_pred HHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchh
Confidence 9999999999999999999999999999999999999999998888899999999999998764 468999999999999
Q ss_pred cchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 002045 533 IDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (976)
Q Consensus 533 ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~ 608 (976)
||.+++| ||...|++|+|....|..+++.++......++...+.+|+..|.||+|+||.-+++.|.+.-++...
T Consensus 282 LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvq 355 (439)
T KOG0739|consen 282 LDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQ 355 (439)
T ss_pred HHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhh
Confidence 9999999 9999999999999999999999999999999988889999999999999999999999999888754
No 21
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-37 Score=347.65 Aligned_cols=230 Identities=38% Similarity=0.644 Sum_probs=219.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
..+.|+||+|+.++|+.|.+++.+|.+||.+|...+++.+.|||||||||||||+||-++|..++ +.|+++.|.+
T Consensus 662 tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~-----~~fisvKGPE 736 (952)
T KOG0735|consen 662 TGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN-----LRFISVKGPE 736 (952)
T ss_pred CCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC-----eeEEEecCHH
Confidence 45899999999999999999999999999999999999999999999999999999999999885 8999999999
Q ss_pred HHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCcccc
Q 002045 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAI 533 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~~l 533 (976)
++++|+|.++..++.+|..|+..+|||||+||+|+++|+|+..+.+...+++++||..|||...-.+|+|+++|.+|+.|
T Consensus 737 lL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdli 816 (952)
T KOG0735|consen 737 LLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLI 816 (952)
T ss_pred HHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCC
Q 002045 534 DGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (976)
Q Consensus 534 d~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~ 609 (976)
||||+||||+++.++.+.|+..+|.+|++.+........+.+ ++.+|..|.||+|+||..|+..|.+.|+.+...
T Consensus 817 DpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vd-l~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~ 891 (952)
T KOG0735|consen 817 DPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVD-LECLAQKTDGFTGADLQSLLYNAQLAAVHEILK 891 (952)
T ss_pred CHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccc-hHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998877665555 489999999999999999999999999988654
No 22
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-37 Score=314.08 Aligned_cols=247 Identities=38% Similarity=0.669 Sum_probs=222.7
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecc
Q 002045 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (976)
Q Consensus 372 ~~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~ 451 (976)
..|.++..|++|..++++.|++.|..|+.+|+.|.++|+.||+|||||||||||||++|+|+|+... ..|+.+-+
T Consensus 170 ekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd-----acfirvig 244 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD-----ACFIRVIG 244 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC-----ceEEeehh
Confidence 4578999999999999999999999999999999999999999999999999999999999999874 78999999
Q ss_pred hhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCh---hhhhHHHHHHHHHHHhhccCCCCcEEEEecCC
Q 002045 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (976)
Q Consensus 452 ~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~---~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn 528 (976)
++++.+|+|+....++.+|+.|+....||||+||||++.+.|-.. ++....+.+-.|++.++++..++++-|+++||
T Consensus 245 selvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatn 324 (435)
T KOG0729|consen 245 SELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATN 324 (435)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecC
Confidence 999999999999999999999999999999999999999888443 33344566667778889999999999999999
Q ss_pred CccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 002045 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (976)
Q Consensus 529 ~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~ 608 (976)
+|+.|||+|+||||+++.++|.+|+.+.|..||++|.+.+...-+.. ++-||..|..-+|++|+++|.+|.+.|++...
T Consensus 325 rpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir-~ellarlcpnstgaeirsvcteagmfairarr 403 (435)
T KOG0729|consen 325 RPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIR-FELLARLCPNSTGAEIRSVCTEAGMFAIRARR 403 (435)
T ss_pred CCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchh-HHHHHhhCCCCcchHHHHHHHHhhHHHHHHHh
Confidence 99999999999999999999999999999999999999987766554 37899999999999999999999999998654
Q ss_pred CccccCcccccccccceeEeehhhhhcccccc
Q 002045 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (976)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~it~~df~~al~~i~ 640 (976)
. ..|..||..|+..+.
T Consensus 404 k----------------~atekdfl~av~kvv 419 (435)
T KOG0729|consen 404 K----------------VATEKDFLDAVNKVV 419 (435)
T ss_pred h----------------hhhHHHHHHHHHHHH
Confidence 2 367788888776554
No 23
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-37 Score=310.58 Aligned_cols=245 Identities=38% Similarity=0.640 Sum_probs=223.3
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
|.-.++||+|++.++++|.+++.+|+.+++.|..+|+.||+|+|+|||||||||++|||+|.... ..|+.+-+..
T Consensus 166 PtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~-----aTFLKLAgPQ 240 (424)
T KOG0652|consen 166 PTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN-----ATFLKLAGPQ 240 (424)
T ss_pred CcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc-----chHHHhcchH
Confidence 56678899999999999999999999999999999999999999999999999999999998875 6788888999
Q ss_pred HHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChh---hhhHHHHHHHHHHHhhccCCCCcEEEEecCCCc
Q 002045 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ---EQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~---~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~ 530 (976)
++..|+|.....++..|..|+...|+||||||+|++..+|.... +....+.+-.||+.++++.+...|-||++||+.
T Consensus 241 LVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRv 320 (424)
T KOG0652|consen 241 LVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRV 320 (424)
T ss_pred HHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccc
Confidence 99999999999999999999999999999999999998885542 334456677788889999999999999999999
Q ss_pred cccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCc
Q 002045 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQ 610 (976)
Q Consensus 531 ~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~~ 610 (976)
+-|||+|+|.||+++.|+||.|+.+.|..|+++|.+++....+..+ ++||..|.+|+|++..++|-+|.+.|+++...
T Consensus 321 DiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNf-eELaRsTddFNGAQcKAVcVEAGMiALRr~at- 398 (424)
T KOG0652|consen 321 DILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNF-EELARSTDDFNGAQCKAVCVEAGMIALRRGAT- 398 (424)
T ss_pred cccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCH-HHHhhcccccCchhheeeehhhhHHHHhcccc-
Confidence 9999999999999999999999999999999999999998877775 89999999999999999999999999998643
Q ss_pred cccCcccccccccceeEeehhhhhcccccc
Q 002045 611 VYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (976)
Q Consensus 611 ~~~~~~~~~~~~~~~~it~~df~~al~~i~ 640 (976)
.++.+||..++..++
T Consensus 399 ---------------ev~heDfmegI~eVq 413 (424)
T KOG0652|consen 399 ---------------EVTHEDFMEGILEVQ 413 (424)
T ss_pred ---------------cccHHHHHHHHHHHH
Confidence 477888887766554
No 24
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=3.2e-35 Score=340.24 Aligned_cols=353 Identities=16% Similarity=0.229 Sum_probs=252.4
Q ss_pred CcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHH
Q 002045 478 PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEAR 557 (976)
Q Consensus 478 p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er 557 (976)
|.|++|.|+|.++.. ....+.+..|...+ ....+.+||.+.+ ..+++.|.+ +..++.+|+|+.+++
T Consensus 82 ~~~~vl~d~h~~~~~------~~~~r~l~~l~~~~---~~~~~~~i~~~~~--~~~p~el~~---~~~~~~~~lP~~~ei 147 (489)
T CHL00195 82 PALFLLKDFNRFLND------ISISRKLRNLSRIL---KTQPKTIIIIASE--LNIPKELKD---LITVLEFPLPTESEI 147 (489)
T ss_pred CcEEEEecchhhhcc------hHHHHHHHHHHHHH---HhCCCEEEEEcCC--CCCCHHHHh---ceeEEeecCcCHHHH
Confidence 689999999998721 11223333333333 3345556665554 357777776 667889999999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCccccCcccccccccceeEeehhhhhccc
Q 002045 558 AEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMS 637 (976)
Q Consensus 558 ~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~ 637 (976)
.++++.+....+...+...++.++..+.|++..++++++..+... .. .++.+++...++
T Consensus 148 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~----~~-----------------~~~~~~~~~i~~ 206 (489)
T CHL00195 148 KKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIAT----YK-----------------TIDENSIPLILE 206 (489)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cC-----------------CCChhhHHHHHH
Confidence 999999888777888889999999999999999999998764321 10 012222111111
Q ss_pred cccccccccc--ccccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCc
Q 002045 638 TITPAAHRGA--TVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTG 715 (976)
Q Consensus 638 ~i~p~~~r~~--~~~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtG 715 (976)
.......... ....+...|.+++|++...+++...... .......+|+ ..++|+||+||||||
T Consensus 207 ~k~q~~~~~~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~------~~~~~~~~gl---------~~pkGILL~GPpGTG 271 (489)
T CHL00195 207 EKKQIISQTEILEFYSVNEKISDIGGLDNLKDWLKKRSTS------FSKQASNYGL---------PTPRGLLLVGIQGTG 271 (489)
T ss_pred HHHHHHhhhccccccCCCCCHHHhcCHHHHHHHHHHHHHH------hhHHHHhcCC---------CCCceEEEECCCCCc
Confidence 1111111111 1123566788999988777666554211 1122233332 235799999999999
Q ss_pred HhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH--------HHHHHHHH
Q 002045 716 VDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN--------AHEQLRAV 787 (976)
Q Consensus 716 KT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~--------~~~~~~~~ 787 (976)
||++|++||+++ +.+++.++++.++++| +|+++.+++++|..|+..+||||||||||+++.. ...+++.+
T Consensus 272 KTllAkaiA~e~-~~~~~~l~~~~l~~~~-vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~ 349 (489)
T CHL00195 272 KSLTAKAIANDW-QLPLLRLDVGKLFGGI-VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLAT 349 (489)
T ss_pred HHHHHHHHHHHh-CCCEEEEEhHHhcccc-cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHH
Confidence 999999999998 8999999999999987 8999999999999999999999999999998753 22344444
Q ss_pred HHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCC
Q 002045 788 LLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESV 865 (976)
Q Consensus 788 l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~ 865 (976)
|+++|+. ...+|+||||||++ +.||+ +.+|++| .+|+|++|+.++|.+||+.++.+. ......+.
T Consensus 350 lL~~l~~--~~~~V~vIaTTN~~-~~Ld~--allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~--------~~~~~~~~ 416 (489)
T CHL00195 350 FITWLSE--KKSPVFVVATANNI-DLLPL--EILRKGRFDEIFFLDLPSLEEREKIFKIHLQKF--------RPKSWKKY 416 (489)
T ss_pred HHHHHhc--CCCceEEEEecCCh-hhCCH--HHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhc--------CCCccccc
Confidence 4444442 35689999999999 88999 6666444 899999999999999999999841 11123468
Q ss_pred CCCCCCCCCCCCCCCchhHHHHHH-HHHHHHHHh
Q 002045 866 SLPELPKVPTVESGPKASELKAKV-EAEQHALRR 898 (976)
Q Consensus 866 dl~~La~~~~~~sg~s~aelk~~~-ea~~~alre 898 (976)
++..|+..+.+++| ++|+++| +|...+..+
T Consensus 417 dl~~La~~T~GfSG---AdI~~lv~eA~~~A~~~ 447 (489)
T CHL00195 417 DIKKLSKLSNKFSG---AEIEQSIIEAMYIAFYE 447 (489)
T ss_pred CHHHHHhhcCCCCH---HHHHHHHHHHHHHHHHc
Confidence 89999999965555 9999999 777666654
No 25
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=2.4e-35 Score=298.33 Aligned_cols=239 Identities=34% Similarity=0.564 Sum_probs=213.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
+.++|+|++|++++|..++-++.+ |.+|+.|..+. |++||||||||||||++|+++|+++. ++|+.+++.+
T Consensus 116 ~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~WA---PknVLFyGppGTGKTm~Akalane~k-----vp~l~vkat~ 186 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCRLIMEY-LENPERFGDWA---PKNVLFYGPPGTGKTMMAKALANEAK-----VPLLLVKATE 186 (368)
T ss_pred ccccHhhhhchHHHHHHHHHHHHH-hhChHHhcccC---cceeEEECCCCccHHHHHHHHhcccC-----CceEEechHH
Confidence 689999999999999999988888 89999998864 78999999999999999999999984 8999999999
Q ss_pred HHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChh-hhhHHHHHHHHHHHhhccCCCCcEEEEecCCCccc
Q 002045 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ-EQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDA 532 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~-~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~~ 532 (976)
+++.++|+...+++.++..|+..+|||+||||+|+|+-.|.-.. .+....+++.||..|+++..+.+|+.|++||+|+.
T Consensus 187 liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~ 266 (368)
T COG1223 187 LIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPEL 266 (368)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhh
Confidence 99999999999999999999999999999999999986653322 12356799999999999999999999999999999
Q ss_pred cchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHH-HHHHHHHHHHHhhCCcc
Q 002045 533 IDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKA-LCTEAAIRAFREKYPQV 611 (976)
Q Consensus 533 ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~-l~~~A~~~a~~~~~~~~ 611 (976)
||+++++ ||...|+|.+|+.++|..|++.+++.++++.+.. ++.+++.+.|+||+||.. ++..|.++|+.+...
T Consensus 267 LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e-- 341 (368)
T COG1223 267 LDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDRE-- 341 (368)
T ss_pred cCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchh--
Confidence 9999999 9999999999999999999999999999988877 589999999999999975 566677777776443
Q ss_pred ccCcccccccccceeEeehhhhhcccccc
Q 002045 612 YTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (976)
Q Consensus 612 ~~~~~~~~~~~~~~~it~~df~~al~~i~ 640 (976)
.|+.+||..|+.+..
T Consensus 342 --------------~v~~edie~al~k~r 356 (368)
T COG1223 342 --------------KVEREDIEKALKKER 356 (368)
T ss_pred --------------hhhHHHHHHHHHhhc
Confidence 377888888887643
No 26
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=6.2e-35 Score=331.50 Aligned_cols=247 Identities=36% Similarity=0.616 Sum_probs=222.5
Q ss_pred CCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecch
Q 002045 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (976)
Q Consensus 373 ~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~ 452 (976)
.|.++|+||+|++.++++|++++.+|+.+|++|..+|+.+|+++|||||||||||++|+++|+.++ ..|+.+.++
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~-----~~fi~i~~s 213 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT-----ATFIRVVGS 213 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC-----CCEEEEehH
Confidence 478999999999999999999999999999999999999999999999999999999999999885 678888999
Q ss_pred hHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChh---hhhHHHHHHHHHHHhhccCCCCcEEEEecCCC
Q 002045 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ---EQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (976)
Q Consensus 453 ~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~---~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~ 529 (976)
.+..+|+|++...++.+|..+...+|+||||||||.+++.+.... .....+++..|+..|+++....+++||++||+
T Consensus 214 ~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~ 293 (398)
T PTZ00454 214 EFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNR 293 (398)
T ss_pred HHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCC
Confidence 999999999999999999999999999999999999987763322 23345778889999998888889999999999
Q ss_pred ccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCC
Q 002045 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (976)
Q Consensus 530 ~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~ 609 (976)
++.||++++|||||+..|+|+.|+.++|..||+.++....+..+.+ +..+|..+.||+|+||.++|++|++.|+++..
T Consensus 294 ~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd-~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~- 371 (398)
T PTZ00454 294 ADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD-LEDFVSRPEKISAADIAAICQEAGMQAVRKNR- 371 (398)
T ss_pred chhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC-
Confidence 9999999999999999999999999999999999999887765555 47899999999999999999999999998743
Q ss_pred ccccCcccccccccceeEeehhhhhccccccc
Q 002045 610 QVYTSDDKFLIDVDSVTVEKYHFIEAMSTITP 641 (976)
Q Consensus 610 ~~~~~~~~~~~~~~~~~it~~df~~al~~i~p 641 (976)
..|+.+||..|+..+..
T Consensus 372 ---------------~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 372 ---------------YVILPKDFEKGYKTVVR 388 (398)
T ss_pred ---------------CccCHHHHHHHHHHHHh
Confidence 24888999999877643
No 27
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-35 Score=314.09 Aligned_cols=228 Identities=44% Similarity=0.712 Sum_probs=212.5
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcC-CCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecch
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYH-ITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~-~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~ 452 (976)
-.|+|+||+|++.+++++++.|.+|+.+|++|...+ +.+++||||+||||||||++|+++|++.+ .+|+.+..+
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeag-----a~fInv~~s 161 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAG-----ANFINVSVS 161 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcC-----CCcceeecc
Confidence 468999999999999999999999999999997544 47899999999999999999999999996 778999999
Q ss_pred hHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCc--EEEEecCCCc
Q 002045 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQ--VVLIGATNRV 530 (976)
Q Consensus 453 ~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~--vivI~atn~~ 530 (976)
.++++|+|++++.++.+|..|.+-+||||||||+|.++..|..........+-.+|...|+++.+.++ |+|+||||+|
T Consensus 162 ~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP 241 (386)
T KOG0737|consen 162 NLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRP 241 (386)
T ss_pred ccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCC
Confidence 99999999999999999999999999999999999999999777777888899999999999988765 9999999999
Q ss_pred cccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCC
Q 002045 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (976)
Q Consensus 531 ~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~ 609 (976)
..||.|+.| |+++.++++.|+..+|.+||+..++...+..+.++ .++|..|.||||.||.++|..|++..+++...
T Consensus 242 ~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~-~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~ 317 (386)
T KOG0737|consen 242 FDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDL-DEIAQMTEGYSGSDLKELCRLAALRPIRELLV 317 (386)
T ss_pred ccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCH-HHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHH
Confidence 999999999 99999999999999999999999999888766665 89999999999999999999999999998654
No 28
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-34 Score=339.35 Aligned_cols=253 Identities=46% Similarity=0.734 Sum_probs=233.1
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEec
Q 002045 371 QVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (976)
Q Consensus 371 ~~~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~ 450 (976)
...+.++|.+++|++.++..+++.+.+|+.+++.|...++.+++++|||||||||||++|+++|++++ .+|+.+.
T Consensus 234 ~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~-----~~fi~v~ 308 (494)
T COG0464 234 FEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESR-----SRFISVK 308 (494)
T ss_pred cCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCC-----CeEEEee
Confidence 34578999999999999999999999999999999999999999999999999999999999999875 8899999
Q ss_pred chhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCc
Q 002045 451 GADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (976)
Q Consensus 451 ~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~ 530 (976)
+++++++|+|++++.++.+|..|+..+||||||||+|++++.++........+++.+|+.+|+++....+|+||++||+|
T Consensus 309 ~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p 388 (494)
T COG0464 309 GSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRP 388 (494)
T ss_pred CHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCc
Confidence 99999999999999999999999999999999999999999998776665679999999999999999999999999999
Q ss_pred cccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCC
Q 002045 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQP-PSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (976)
Q Consensus 531 ~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~ 609 (976)
+.+|++++|||||+..|+|++|+.++|.+||+.++...... ..+..+..++..+.||+|+||..+|++|++.++++..
T Consensus 389 ~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~- 467 (494)
T COG0464 389 DDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR- 467 (494)
T ss_pred cccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc-
Confidence 99999999999999999999999999999999999976654 3345568899999999999999999999999999763
Q ss_pred ccccCcccccccccceeEeehhhhhccccccccc
Q 002045 610 QVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAA 643 (976)
Q Consensus 610 ~~~~~~~~~~~~~~~~~it~~df~~al~~i~p~~ 643 (976)
...++..||..|+..+.|..
T Consensus 468 --------------~~~~~~~~~~~a~~~~~p~~ 487 (494)
T COG0464 468 --------------RREVTLDDFLDALKKIKPSV 487 (494)
T ss_pred --------------cCCccHHHHHHHHHhcCCCC
Confidence 23489999999999877753
No 29
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-34 Score=334.81 Aligned_cols=246 Identities=37% Similarity=0.618 Sum_probs=226.5
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
..++|.|+.|.+++|+++.++|.+ |+.|..|..+|...|+|+||+||||||||+||+++|.+.+ ++|+.+++++
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~-----VPFf~iSGS~ 218 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG-----VPFFSISGSD 218 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccC-----CCceeccchh
Confidence 579999999999999999999998 9999999999999999999999999999999999999985 9999999999
Q ss_pred HHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCC---hhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCc
Q 002045 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSS---KQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~---~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~ 530 (976)
|+..|+|....+++.+|.+|++++||||||||||++...|+. .+.....+.+++||..||++..+..|+||++||+|
T Consensus 219 FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRp 298 (596)
T COG0465 219 FVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRP 298 (596)
T ss_pred hhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCc
Confidence 999999999999999999999999999999999999988743 24445678999999999999988899999999999
Q ss_pred cccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCc
Q 002045 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQ 610 (976)
Q Consensus 531 ~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~~ 610 (976)
+-+|+||+|||||++.|.++.|+...|.+|++.|++...+..+.+. ..+|..|.||+|+++.+++++|++.|.++...
T Consensus 299 dVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl-~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~- 376 (596)
T COG0465 299 DVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDL-KKIARGTPGFSGADLANLLNEAALLAARRNKK- 376 (596)
T ss_pred ccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCH-HHHhhhCCCcccchHhhhHHHHHHHHHHhcCe-
Confidence 9999999999999999999999999999999999999888866665 56999999999999999999999999998653
Q ss_pred cccCcccccccccceeEeehhhhhcccccccc
Q 002045 611 VYTSDDKFLIDVDSVTVEKYHFIEAMSTITPA 642 (976)
Q Consensus 611 ~~~~~~~~~~~~~~~~it~~df~~al~~i~p~ 642 (976)
.++..+|..+...+.-.
T Consensus 377 ---------------~i~~~~i~ea~drv~~G 393 (596)
T COG0465 377 ---------------EITMRDIEEAIDRVIAG 393 (596)
T ss_pred ---------------eEeccchHHHHHHHhcC
Confidence 47777888887766543
No 30
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=4.7e-34 Score=352.52 Aligned_cols=285 Identities=42% Similarity=0.689 Sum_probs=240.0
Q ss_pred HhhhcccccCCCCCCCCCCCCcccCCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHH
Q 002045 349 ALTSGIQTAGPSSKGGADIQPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTL 428 (976)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~ 428 (976)
.+...++...|+..... ....+.++|++|+|++.+|+.|++.+.+|+.++++|..+|+.+++++|||||||||||+
T Consensus 427 df~~Al~~v~ps~~~~~----~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~ 502 (733)
T TIGR01243 427 DFMEALKMVEPSAIREV----LVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTL 502 (733)
T ss_pred HHHHHHhhccccccchh----hccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHH
Confidence 34444455555543221 11236789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCcEEEEEecchhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChh-hhhHHHHHHH
Q 002045 429 IARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ-EQIHNSIVST 507 (976)
Q Consensus 429 laralA~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~-~~~~~~~~~~ 507 (976)
+|+++|++++ .+|+.+++++++++|+|+++..++.+|..|+...||||||||||.|++.++... .....+++++
T Consensus 503 lakalA~e~~-----~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~ 577 (733)
T TIGR01243 503 LAKAVATESG-----ANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQ 577 (733)
T ss_pred HHHHHHHhcC-----CCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHH
Confidence 9999999985 789999999999999999999999999999999999999999999998876442 3346789999
Q ss_pred HHHHhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCC
Q 002045 508 LLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGY 587 (976)
Q Consensus 508 Ll~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~ 587 (976)
|+..|+++....+++||+|||+|+.||++++|||||+..|+||+|+.++|.+||+.++++..+..+.+ +..||..+.||
T Consensus 578 lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~-l~~la~~t~g~ 656 (733)
T TIGR01243 578 LLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD-LEELAEMTEGY 656 (733)
T ss_pred HHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC-HHHHHHHcCCC
Confidence 99999998888899999999999999999999999999999999999999999999998877655444 48899999999
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCccccCccc--ccccccceeEeehhhhhccccccccc
Q 002045 588 CGADLKALCTEAAIRAFREKYPQVYTSDDK--FLIDVDSVTVEKYHFIEAMSTITPAA 643 (976)
Q Consensus 588 s~~dI~~l~~~A~~~a~~~~~~~~~~~~~~--~~~~~~~~~it~~df~~al~~i~p~~ 643 (976)
+|+||.++|++|++.++++........... .........|+..||..|+..++|+.
T Consensus 657 sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~ 714 (733)
T TIGR01243 657 TGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSV 714 (733)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCCC
Confidence 999999999999999999764322111000 00011234689999999999888764
No 31
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.4e-33 Score=322.37 Aligned_cols=253 Identities=44% Similarity=0.718 Sum_probs=224.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecc
Q 002045 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (976)
Q Consensus 372 ~~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~ 451 (976)
..+.++|++|+|+++++++|++++.+|+.++++|..+|+.+|++||||||||||||++|+++|+.++ .+|+.+++
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~-----~~~i~v~~ 198 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN-----ATFIRVVG 198 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC-----CCEEEeeh
Confidence 3478999999999999999999999999999999999999999999999999999999999999985 57889999
Q ss_pred hhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhh---hhHHHHHHHHHHHhhccCCCCcEEEEecCC
Q 002045 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQE---QIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (976)
Q Consensus 452 ~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~---~~~~~~~~~Ll~~ld~~~~~~~vivI~atn 528 (976)
+++...|+|+....++.+|..+....|+||||||+|.|++.+..... ....+.+.+|+..++++...++++||+|||
T Consensus 199 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn 278 (389)
T PRK03992 199 SELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATN 278 (389)
T ss_pred HHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecC
Confidence 99999999999999999999999999999999999999877654322 223456677888888877778999999999
Q ss_pred CccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 002045 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (976)
Q Consensus 529 ~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~ 608 (976)
.++.+|++|+|||||+..|+|++|+.++|.+||+.++....+..+.+ +..+|..+.||+|+||.++|++|++.|+++..
T Consensus 279 ~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~-~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~ 357 (389)
T PRK03992 279 RIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD-LEELAELTEGASGADLKAICTEAGMFAIRDDR 357 (389)
T ss_pred ChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999998877654444 58899999999999999999999999988642
Q ss_pred CccccCcccccccccceeEeehhhhhcccccccccccc
Q 002045 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHRG 646 (976)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~it~~df~~al~~i~p~~~r~ 646 (976)
..|+.+||..|+..+.+.....
T Consensus 358 ----------------~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 358 ----------------TEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred ----------------CCcCHHHHHHHHHHHhcccccc
Confidence 2488999999999988765443
No 32
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=2.4e-33 Score=319.96 Aligned_cols=246 Identities=39% Similarity=0.674 Sum_probs=219.2
Q ss_pred CCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecch
Q 002045 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (976)
Q Consensus 373 ~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~ 452 (976)
.|.++|+||+|++.++++|.+++.+|+.+|++|..+|+.++.++|||||||||||++|+++|+++. ..|+.+.++
T Consensus 177 ~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~-----~~fi~V~~s 251 (438)
T PTZ00361 177 APLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS-----ATFLRVVGS 251 (438)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC-----CCEEEEecc
Confidence 467899999999999999999999999999999999999999999999999999999999999985 567888899
Q ss_pred hHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCh---hhhhHHHHHHHHHHHhhccCCCCcEEEEecCCC
Q 002045 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (976)
Q Consensus 453 ~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~---~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~ 529 (976)
++...|+|+....++.+|..|....||||||||||.++..+... +.....+.+..|+..|+++....++.||++||+
T Consensus 252 eL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr 331 (438)
T PTZ00361 252 ELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNR 331 (438)
T ss_pred hhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCC
Confidence 99999999999999999999999999999999999998776432 222345566778888888877788999999999
Q ss_pred ccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCC
Q 002045 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (976)
Q Consensus 530 ~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~ 609 (976)
++.||++++|+|||+..|+|+.|+.++|.+||+.++....+..+.+ +..++..+.||+|+||.++|++|++.|+++..
T Consensus 332 ~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvd-l~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r- 409 (438)
T PTZ00361 332 IESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVD-LEEFIMAKDELSGADIKAICTEAGLLALRERR- 409 (438)
T ss_pred hHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcC-HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcC-
Confidence 9999999999999999999999999999999999998887655444 47899999999999999999999999998753
Q ss_pred ccccCcccccccccceeEeehhhhhcccccc
Q 002045 610 QVYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (976)
Q Consensus 610 ~~~~~~~~~~~~~~~~~it~~df~~al~~i~ 640 (976)
..|+.+||..|+..+.
T Consensus 410 ---------------~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 410 ---------------MKVTQADFRKAKEKVL 425 (438)
T ss_pred ---------------CccCHHHHHHHHHHHH
Confidence 2488899998887764
No 33
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=8.6e-33 Score=320.05 Aligned_cols=244 Identities=27% Similarity=0.424 Sum_probs=212.8
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
+.++|++|+|++.+|+.|.+.... +...+..+|+++|+|||||||||||||++|+++|++++ .+|+.++++.
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~-----~~~~~l~~~~ 294 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ-----LPLLRLDVGK 294 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEEhHH
Confidence 578899999999999999876543 45556778999999999999999999999999999985 7889999999
Q ss_pred HHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCC-hhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCccc
Q 002045 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSS-KQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDA 532 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~-~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~~ 532 (976)
++++|+|+++..++.+|..+...+||||||||||.++..+.. .......+++.+|+.+|+. ....|+||+|||.++.
T Consensus 295 l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~ 372 (489)
T CHL00195 295 LFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDL 372 (489)
T ss_pred hcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhh
Confidence 999999999999999999999999999999999999875432 2334567899999999984 4567999999999999
Q ss_pred cchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCcc
Q 002045 533 IDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQP-PSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQV 611 (976)
Q Consensus 533 ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~~~ 611 (976)
||++++|+|||+..|+|+.|+.++|.+||+.++.+.... .....+..+|..|.||||+||+++|.+|+..|+.+..
T Consensus 373 Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~--- 449 (489)
T CHL00195 373 LPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKR--- 449 (489)
T ss_pred CCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCC---
Confidence 999999999999999999999999999999999886543 2344568999999999999999999999998876432
Q ss_pred ccCcccccccccceeEeehhhhhcccccccccc
Q 002045 612 YTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAH 644 (976)
Q Consensus 612 ~~~~~~~~~~~~~~~it~~df~~al~~i~p~~~ 644 (976)
.++.+||..++..+.|.+.
T Consensus 450 --------------~lt~~dl~~a~~~~~Pls~ 468 (489)
T CHL00195 450 --------------EFTTDDILLALKQFIPLAQ 468 (489)
T ss_pred --------------CcCHHHHHHHHHhcCCCcc
Confidence 3788999999999998754
No 34
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=3e-31 Score=326.42 Aligned_cols=421 Identities=17% Similarity=0.221 Sum_probs=283.9
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC-----CcEEEEEe
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYMR 449 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~~ 449 (976)
.-.+++++|++..+..+.+++.. ....++||+||||||||++|+++|+.+.... ....++.+
T Consensus 178 ~~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 178 NGKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred cCCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 34678899999999988777654 3456899999999999999999999985432 24678888
Q ss_pred cchhHH--hhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecC
Q 002045 450 KGADVL--SKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (976)
Q Consensus 450 ~~~~l~--~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~at 527 (976)
++..++ .+|.|+.+..++.+|+.+....++||||||||.|++.+...++. ..+.+.|+..|. ++.+.+|++|
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~--~~~~~~L~~~l~----~g~i~~IgaT 318 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGS--MDASNLLKPALS----SGKLRCIGST 318 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCcc--HHHHHHHHHHHh----CCCeEEEEec
Confidence 888887 47899999999999999988788999999999998765432221 123334444443 5789999999
Q ss_pred CCcc-----ccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHccCCCHH-----HHH
Q 002045 528 NRVD-----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK----WKQPPSRELKSELAASCVGYCGA-----DLK 593 (976)
Q Consensus 528 n~~~-----~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~----~~~~~~~~~l~~lA~~t~G~s~~-----dI~ 593 (976)
|..+ .+|++|.| ||. .|.|+.|+.+++.+||+.+... ..+.++++.+..++..+..|.+. -.-
T Consensus 319 t~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai 395 (731)
T TIGR02639 319 TYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAI 395 (731)
T ss_pred CHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHH
Confidence 9743 47999999 995 7999999999999999976654 34567889989899888777543 234
Q ss_pred HHHHHHHHHHHHhhCCccccCcccccccccceeEeehhhhhcccccccccccccccccCCCcccchhhhHHHHHHHhhhh
Q 002045 594 ALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYI 673 (976)
Q Consensus 594 ~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~i~p~~~r~~~~~~~~~~~~~i~~l~~~l~~~~~~l 673 (976)
.++.+|+.....+... .....|+..|+..++..++. ++...+.+.....+....+.+.+.
T Consensus 396 ~lld~a~a~~~~~~~~------------~~~~~v~~~~i~~~i~~~tg-------iP~~~~~~~~~~~l~~l~~~l~~~- 455 (731)
T TIGR02639 396 DVIDEAGASFRLRPKA------------KKKANVSVKDIENVVAKMAH-------IPVKTVSVDDREKLKNLEKNLKAK- 455 (731)
T ss_pred HHHHHhhhhhhcCccc------------ccccccCHHHHHHHHHHHhC-------CChhhhhhHHHHHHHHHHHHHhcc-
Confidence 5555554322111000 01234788888888877642 122233344444443333333332
Q ss_pred cccCCCCCCchHHHh----hhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCC-----
Q 002045 674 SDIFPPLGMSSELTK----LCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDP----- 744 (976)
Q Consensus 674 ~~i~~~~~~~~~~~~----~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~----- 744 (976)
|+ .+...... +.....|...|.++...+||+||||||||++|++||+.+ +.+++.++++++....
T Consensus 456 --v~---GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-~~~~~~~d~se~~~~~~~~~l 529 (731)
T TIGR02639 456 --IF---GQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-GVHLERFDMSEYMEKHTVSRL 529 (731)
T ss_pred --ee---CcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-cCCeEEEeCchhhhcccHHHH
Confidence 22 22222211 111223444443333458999999999999999999998 6789999987754310
Q ss_pred ------CCCChHHHHHHHHHHHHhcCCceEeccccchhHHHHHHHHHHHHHHHHhhC---------CCCCCEEEEEecCC
Q 002045 745 ------SAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHEQLRAVLLTLLEEL---------PSHLPILLLGSSSV 809 (976)
Q Consensus 745 ------~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~---------~~~~~v~vi~ttn~ 809 (976)
++|.. ....+...++....+||||||||++.+. +.+.|+++|+.- -++.+++||+|||.
T Consensus 530 ig~~~gyvg~~--~~~~l~~~~~~~p~~VvllDEieka~~~----~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~ 603 (731)
T TIGR02639 530 IGAPPGYVGFE--QGGLLTEAVRKHPHCVLLLDEIEKAHPD----IYNILLQVMDYATLTDNNGRKADFRNVILIMTSNA 603 (731)
T ss_pred hcCCCCCcccc--hhhHHHHHHHhCCCeEEEEechhhcCHH----HHHHHHHhhccCeeecCCCcccCCCCCEEEECCCc
Confidence 12321 1233455556677799999999987654 455666777642 12467889999997
Q ss_pred CcccCcC--------------------CC--CCCcCCccEEEecCCCHHHHHHHHHHHHHHH
Q 002045 810 PLAEVEG--------------------DP--STVFPLRSVYQVEKPSTEDRSLFLGRLIEAA 849 (976)
Q Consensus 810 ~~~~Ld~--------------------~~--~~~~~~r~~i~v~~P~~~er~~i~~~~l~~~ 849 (976)
....+-. .. ..+-+...+|.|.+.+.++..+|++..+...
T Consensus 604 g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l 665 (731)
T TIGR02639 604 GASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDEL 665 (731)
T ss_pred chhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHH
Confidence 6222110 00 1111222788899999999999999999753
No 35
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-33 Score=297.05 Aligned_cols=223 Identities=20% Similarity=0.274 Sum_probs=191.3
Q ss_pred cccccccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHH
Q 002045 645 RGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAIL 724 (976)
Q Consensus 645 r~~~~~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia 724 (976)
+.+....+.+.|++|.+|.+..+-+.+. |.-|+.+++.|..+- . | =+|||++||||||||+||+|+|
T Consensus 200 rdIl~~np~ikW~DIagl~~AK~lL~EA---VvlPi~mPe~F~Gir-r------P---WkgvLm~GPPGTGKTlLAKAvA 266 (491)
T KOG0738|consen 200 RDILQRNPNIKWDDIAGLHEAKKLLKEA---VVLPIWMPEFFKGIR-R------P---WKGVLMVGPPGTGKTLLAKAVA 266 (491)
T ss_pred HHHhccCCCcChHhhcchHHHHHHHHHH---HhhhhhhHHHHhhcc-c------c---cceeeeeCCCCCcHHHHHHHHH
Confidence 3444557789999999996665554444 333677777665432 2 2 2589999999999999999999
Q ss_pred HhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH--------HHHHHHHHHHHHHhhCC
Q 002045 725 HELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN--------AHEQLRAVLLTLLEELP 796 (976)
Q Consensus 725 ~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~--------~~~~~~~~l~~ll~~~~ 796 (976)
.++ +..|+.|+.+.|.++| -|++|+.++-+|..|+-.+|++|||||||+|+.. .+.++.+.|+..|+++.
T Consensus 267 TEc-~tTFFNVSsstltSKw-RGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~ 344 (491)
T KOG0738|consen 267 TEC-GTTFFNVSSSTLTSKW-RGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQ 344 (491)
T ss_pred Hhh-cCeEEEechhhhhhhh-ccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccc
Confidence 999 7899999999999998 7999999999999999999999999999999843 67889999999999986
Q ss_pred C----CCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCC
Q 002045 797 S----HLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPK 872 (976)
Q Consensus 797 ~----~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~ 872 (976)
. ...|||+|+||-| ++||+ |++|++.+.|+|++|+.+.|..+|+.+|. .....++++++.|+.
T Consensus 345 ~t~e~~k~VmVLAATN~P-WdiDE--AlrRRlEKRIyIPLP~~~~R~~Li~~~l~----------~~~~~~~~~~~~lae 411 (491)
T KOG0738|consen 345 GTLENSKVVMVLAATNFP-WDIDE--ALRRRLEKRIYIPLPDAEARSALIKILLR----------SVELDDPVNLEDLAE 411 (491)
T ss_pred cccccceeEEEEeccCCC-cchHH--HHHHHHhhheeeeCCCHHHHHHHHHHhhc----------cccCCCCccHHHHHH
Confidence 5 3459999999999 88999 99999888888999999999999999998 466688899999999
Q ss_pred CCCCCCCCchhHHHHHH-HHHHHHHHh
Q 002045 873 VPTVESGPKASELKAKV-EAEQHALRR 898 (976)
Q Consensus 873 ~~~~~sg~s~aelk~~~-ea~~~alre 898 (976)
.++||+| ++|..+| +|.++++|+
T Consensus 412 ~~eGySG---aDI~nvCreAsm~~mRR 435 (491)
T KOG0738|consen 412 RSEGYSG---ADITNVCREASMMAMRR 435 (491)
T ss_pred HhcCCCh---HHHHHHHHHHHHHHHHH
Confidence 9977777 9999999 999999986
No 36
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=2.7e-31 Score=306.58 Aligned_cols=228 Identities=38% Similarity=0.660 Sum_probs=195.9
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC-----CcEEE
Q 002045 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSF 446 (976)
Q Consensus 372 ~~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~ 446 (976)
..|.++|++|+|++.++++|++.+.+|+.++++|..+|+.+++++|||||||||||++|+++|+.+.... ....|
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 3478999999999999999999999999999999999999999999999999999999999999987542 24567
Q ss_pred EEecchhHHhhhHhHHHHHHHHHHHHHHhc----CCcEEEEccccccCCCCCCh-hhhhHHHHHHHHHHHhhccCCCCcE
Q 002045 447 YMRKGADVLSKWVGEAERQLKLLFEEAQRN----QPSIIFFDEIDGLAPVRSSK-QEQIHNSIVSTLLALMDGLDSRGQV 521 (976)
Q Consensus 447 ~~~~~~~l~~~~~g~~~~~l~~~f~~a~~~----~p~VL~iDEid~L~~~r~~~-~~~~~~~~~~~Ll~~ld~~~~~~~v 521 (976)
+.+.+++++++|+|+++..++.+|..+... .||||||||+|.++..++.. .......++.+|+..|+++...+++
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~V 334 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNV 334 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCce
Confidence 788889999999999999999999988763 69999999999999877543 2334567889999999999888899
Q ss_pred EEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHH
Q 002045 522 VLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAI 601 (976)
Q Consensus 522 ivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~ 601 (976)
+||+|||+++.||++|+|||||+..|+|+.|+.+++.+||+.++... +..+.+ +..+.|++++++..+|+++..
T Consensus 335 iVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~-l~l~~~-----l~~~~g~~~a~~~al~~~av~ 408 (512)
T TIGR03689 335 IVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDS-LPLDAD-----LAEFDGDREATAAALIQRAVD 408 (512)
T ss_pred EEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhcc-CCchHH-----HHHhcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998652 222222 234678888888888888765
Q ss_pred HHHH
Q 002045 602 RAFR 605 (976)
Q Consensus 602 ~a~~ 605 (976)
..+.
T Consensus 409 ~~~a 412 (512)
T TIGR03689 409 HLYA 412 (512)
T ss_pred HHhh
Confidence 5554
No 37
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=2e-31 Score=315.24 Aligned_cols=246 Identities=39% Similarity=0.623 Sum_probs=219.4
Q ss_pred CCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecch
Q 002045 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (976)
Q Consensus 373 ~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~ 452 (976)
.+.++|++|+|+++++++|.+++.+ +.+++.|..+|..+++++||+||||||||++|+++|.+++ ++|+.++++
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~-----~~~~~i~~~ 122 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG-----VPFFSISGS 122 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC-----CCeeeccHH
Confidence 4789999999999999999999887 8899999999999999999999999999999999999885 788999999
Q ss_pred hHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCh---hhhhHHHHHHHHHHHhhccCCCCcEEEEecCCC
Q 002045 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (976)
Q Consensus 453 ~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~---~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~ 529 (976)
++...++|.+...++.+|..+....||||||||||.+++.+... .......++++|+..|+++....+++||+|||+
T Consensus 123 ~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~ 202 (495)
T TIGR01241 123 DFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNR 202 (495)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCC
Confidence 99999999999999999999999999999999999999877542 223456788999999999888889999999999
Q ss_pred ccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCC
Q 002045 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (976)
Q Consensus 530 ~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~ 609 (976)
++.||++|+|||||+..|+|+.|+.++|.+||+.++.......+. .+..+|..+.||+++||.++|++|+..+.++..
T Consensus 203 ~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~-~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~- 280 (495)
T TIGR01241 203 PDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDV-DLKAVARRTPGFSGADLANLLNEAALLAARKNK- 280 (495)
T ss_pred hhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcch-hHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC-
Confidence 999999999999999999999999999999999999887655333 357999999999999999999999988877532
Q ss_pred ccccCcccccccccceeEeehhhhhccccccc
Q 002045 610 QVYTSDDKFLIDVDSVTVEKYHFIEAMSTITP 641 (976)
Q Consensus 610 ~~~~~~~~~~~~~~~~~it~~df~~al~~i~p 641 (976)
..|+.+||..|+..+..
T Consensus 281 ---------------~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 281 ---------------TEITMNDIEEAIDRVIA 297 (495)
T ss_pred ---------------CCCCHHHHHHHHHHHhc
Confidence 24788899999887654
No 38
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.97 E-value=9e-31 Score=298.44 Aligned_cols=245 Identities=46% Similarity=0.734 Sum_probs=214.9
Q ss_pred CCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecch
Q 002045 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (976)
Q Consensus 373 ~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~ 452 (976)
.+.++|++|+|++++++.|++++.+|+.++++|..+|+.+++++|||||||||||++|+++|+.++ ..|+.+.+.
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~-----~~~~~v~~~ 190 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN-----ATFIRVVGS 190 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC-----CCEEecchH
Confidence 478999999999999999999999999999999999999999999999999999999999999885 567888889
Q ss_pred hHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChh---hhhHHHHHHHHHHHhhccCCCCcEEEEecCCC
Q 002045 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ---EQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (976)
Q Consensus 453 ~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~---~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~ 529 (976)
++...++|+....++.+|..+....|+||||||+|.|+..+.... .......+.+++..++++...++++||+|||.
T Consensus 191 ~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~ 270 (364)
T TIGR01242 191 ELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNR 270 (364)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCC
Confidence 999999999999999999999999999999999999987654332 22234566777777887766778999999999
Q ss_pred ccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCC
Q 002045 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (976)
Q Consensus 530 ~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~ 609 (976)
++.+|+++++||||+..|+|+.|+.++|.+||+.++....+..+.+ +..++..+.||+|+||.++|++|++.|+++..
T Consensus 271 ~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~-~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~- 348 (364)
T TIGR01242 271 PDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD-LEAIAKMTEGASGADLKAICTEAGMFAIREER- 348 (364)
T ss_pred hhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC-
Confidence 9999999999999999999999999999999999998876654333 58899999999999999999999999988643
Q ss_pred ccccCcccccccccceeEeehhhhhccccc
Q 002045 610 QVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (976)
Q Consensus 610 ~~~~~~~~~~~~~~~~~it~~df~~al~~i 639 (976)
..|+.+||..|+..+
T Consensus 349 ---------------~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 349 ---------------DYVTMDDFIKAVEKV 363 (364)
T ss_pred ---------------CccCHHHHHHHHHHh
Confidence 248888998887653
No 39
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.97 E-value=1.4e-29 Score=306.76 Aligned_cols=420 Identities=18% Similarity=0.238 Sum_probs=271.5
Q ss_pred CCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC-----CcEEEEEec
Q 002045 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYMRK 450 (976)
Q Consensus 376 ~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~~~ 450 (976)
-.++.++|.+..+..+.+++.. ....++||+||||||||++|+++|..+.... ....++.++
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 3466799999999999887654 2356889999999999999999998864322 245566666
Q ss_pred chhHH--hhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCC
Q 002045 451 GADVL--SKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (976)
Q Consensus 451 ~~~l~--~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn 528 (976)
...++ .+|.|+.+..++.+|..+....++||||||||.|++.+...+.+ ..+.+.|...+ .++.+.||++||
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~--~d~~nlLkp~L----~~g~i~vIgATt 323 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ--VDAANLIKPLL----SSGKIRVIGSTT 323 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcH--HHHHHHHHHHH----hCCCeEEEecCC
Confidence 66666 46789999999999999988888999999999998776432221 22222333333 467899999999
Q ss_pred Ccc-----ccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHccCC-----CHHHHHH
Q 002045 529 RVD-----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW----KQPPSRELKSELAASCVGY-----CGADLKA 594 (976)
Q Consensus 529 ~~~-----~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~----~~~~~~~~l~~lA~~t~G~-----s~~dI~~ 594 (976)
.++ ..|++|.| ||. .|.++.|+.+++..||+.+...+ .+.+++..+..++..+..| -+.....
T Consensus 324 ~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaid 400 (758)
T PRK11034 324 YQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAID 400 (758)
T ss_pred hHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHH
Confidence 865 47999999 995 79999999999999999776554 4566777777666655543 3456777
Q ss_pred HHHHHHHHHHHhhCCccccCcccccccccceeEeehhhhhcccccccccccccccccCCCcccchhhhHHHHHHHhhhhc
Q 002045 595 LCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYIS 674 (976)
Q Consensus 595 l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~i~p~~~r~~~~~~~~~~~~~i~~l~~~l~~~~~~l~ 674 (976)
++.+|+...-. .+. . .....|+..|+...+..++... ...+.... ...+..+...+.
T Consensus 401 lldea~a~~~~--~~~---~-------~~~~~v~~~~i~~v~~~~tgip-------~~~~~~~~----~~~l~~l~~~L~ 457 (758)
T PRK11034 401 VIDEAGARARL--MPV---S-------KRKKTVNVADIESVVARIARIP-------EKSVSQSD----RDTLKNLGDRLK 457 (758)
T ss_pred HHHHHHHhhcc--Ccc---c-------ccccccChhhHHHHHHHHhCCC-------hhhhhhhH----HHHHHHHHHHhc
Confidence 88887753211 110 0 0112366677777766654321 11111111 112222222221
Q ss_pred ccCCCCCCchHHHhh----hhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCccccc--------
Q 002045 675 DIFPPLGMSSELTKL----CMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLS-------- 742 (976)
Q Consensus 675 ~i~~~~~~~~~~~~~----~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~-------- 742 (976)
+. .+.+......+ .....|...|-++...+||+||||||||++|+++|..+ +.+++.++++++..
T Consensus 458 ~~--ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l-~~~~i~id~se~~~~~~~~~Li 534 (758)
T PRK11034 458 ML--VFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL-GIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_pred ce--EeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh-CCCcEEeechhhcccccHHHHc
Confidence 11 12222222211 11122333333333469999999999999999999998 68999999876532
Q ss_pred ----CCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHHHHHHHHHHHHHHHhhC---------CCCCCEEEEEecCC
Q 002045 743 ----DPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHEQLRAVLLTLLEEL---------PSHLPILLLGSSSV 809 (976)
Q Consensus 743 ----~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~---------~~~~~v~vi~ttn~ 809 (976)
+| +|.. ....+....+....|||||||||++.+. +.+.|+++|+.- -+..+++||+|||.
T Consensus 535 G~~~gy-vg~~--~~g~L~~~v~~~p~sVlllDEieka~~~----v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~ 607 (758)
T PRK11034 535 GAPPGY-VGFD--QGGLLTDAVIKHPHAVLLLDEIEKAHPD----VFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNA 607 (758)
T ss_pred CCCCCc-cccc--ccchHHHHHHhCCCcEEEeccHhhhhHH----HHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCc
Confidence 11 2211 1112334445566699999999998654 555677777632 12468889999994
Q ss_pred CcccCcC--------------------C--CCCCcCCccEEEecCCCHHHHHHHHHHHHHHHH
Q 002045 810 PLAEVEG--------------------D--PSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAAV 850 (976)
Q Consensus 810 ~~~~Ld~--------------------~--~~~~~~~r~~i~v~~P~~~er~~i~~~~l~~~~ 850 (976)
....+.. . ..++-+...++.|.+.+.++..+|+...+....
T Consensus 608 g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~ 670 (758)
T PRK11034 608 GVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQ 670 (758)
T ss_pred CHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 4111100 0 011122237888999999999999998887543
No 40
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.5e-31 Score=294.24 Aligned_cols=259 Identities=38% Similarity=0.597 Sum_probs=227.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
+.+.|++|+|++.+++.+.+++.+|+..+++|..+. .+++++||.||||+|||+|++|||.+++ ..|+.++++.
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~-----atff~iSass 221 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESG-----ATFFNISASS 221 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhc-----ceEeeccHHH
Confidence 579999999999999999999999999999999875 6788999999999999999999999996 8899999999
Q ss_pred HHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCC--CCcEEEEecCCCcc
Q 002045 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS--RGQVVLIGATNRVD 531 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~--~~~vivI~atn~~~ 531 (976)
+.++|+|+++..++.+|.-|+..+|+|+||||+|.++.+|.........++..++|..+++... .++|+||+|||.|+
T Consensus 222 LtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~ 301 (428)
T KOG0740|consen 222 LTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPW 301 (428)
T ss_pred hhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCch
Confidence 9999999999999999999999999999999999999999777777778888888888876544 45899999999999
Q ss_pred ccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCcc
Q 002045 532 AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQV 611 (976)
Q Consensus 532 ~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~~~ 611 (976)
.+|.+++| ||...+++|+|+.+.|..+|+.++...+..+....+..|+..|+||++.||.++|.+|++.-++.....
T Consensus 302 e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~- 378 (428)
T KOG0740|consen 302 ELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGT- 378 (428)
T ss_pred HHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccc-
Confidence 99999999 999999999999999999999999998777777778999999999999999999999998877765442
Q ss_pred ccCcccccccccceeEeehhhhhccccccccc
Q 002045 612 YTSDDKFLIDVDSVTVEKYHFIEAMSTITPAA 643 (976)
Q Consensus 612 ~~~~~~~~~~~~~~~it~~df~~al~~i~p~~ 643 (976)
.............++..||..++..+.+..
T Consensus 379 --~~~~~~~~~~~r~i~~~df~~a~~~i~~~~ 408 (428)
T KOG0740|consen 379 --TDLEFIDADKIRPITYPDFKNAFKNIKPSV 408 (428)
T ss_pred --hhhhhcchhccCCCCcchHHHHHHhhcccc
Confidence 011111112334577788888888887754
No 41
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.9e-31 Score=277.02 Aligned_cols=228 Identities=40% Similarity=0.663 Sum_probs=202.7
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
..++|+.|+|+-.++.++++.+..|+.+|++|...|+.+|.+++||||||||||++|+++|..++ ++|+.+..+.
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg-----~nfl~v~ss~ 201 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMG-----VNFLKVVSSA 201 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcC-----CceEEeeHhh
Confidence 46899999999999999999999999999999999999999999999999999999999999986 8899999999
Q ss_pred HHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHH---HHHHHHhhccCCCCcEEEEecCCCc
Q 002045 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIV---STLLALMDGLDSRGQVVLIGATNRV 530 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~---~~Ll~~ld~~~~~~~vivI~atn~~ 530 (976)
+.++|.|++...++..|..|+...|||||+||||++++.+.+........++ -.|++.|+++...++|-+|+|||+|
T Consensus 202 lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrp 281 (388)
T KOG0651|consen 202 LVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRP 281 (388)
T ss_pred hhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCc
Confidence 9999999999999999999999999999999999999887555444444444 4455667777778899999999999
Q ss_pred cccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhh
Q 002045 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREK 607 (976)
Q Consensus 531 ~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~ 607 (976)
+.|+|+|+||||+++.+++|.|+...|..|++.+.......-.-+ .+.+.+...||+|+++++.|++|.+.+++..
T Consensus 282 dtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid-~eaivK~~d~f~gad~rn~~tEag~Fa~~~~ 357 (388)
T KOG0651|consen 282 DTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEID-DEAILKLVDGFNGADLRNVCTEAGMFAIPEE 357 (388)
T ss_pred cccchhhcCCccccceeccCCcchhhceeeEeecccccccccccc-HHHHHHHHhccChHHHhhhcccccccccchh
Confidence 999999999999999999999999999999999887764422222 4678899999999999999999998777653
No 42
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.9e-31 Score=317.69 Aligned_cols=298 Identities=20% Similarity=0.254 Sum_probs=243.0
Q ss_pred cCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcC-
Q 002045 651 SRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEK- 729 (976)
Q Consensus 651 ~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~- 729 (976)
...+.|..++||..+++.+++. |+-|+.+++.|..+++.+ |.|+||+||||||||++|+++|..+..
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEm---Vl~PLlyPE~f~~~~itp---------PrgvL~~GppGTGkTl~araLa~~~s~~ 326 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEM---VLLPLLYPEFFDNFNITP---------PRGVLFHGPPGTGKTLMARALAAACSRG 326 (1080)
T ss_pred hcccCccccccHHHHHHHHHHH---HHhHhhhhhHhhhcccCC---------CcceeecCCCCCchhHHHHhhhhhhccc
Confidence 4567899999999998888887 445788899998888754 679999999999999999999987533
Q ss_pred ---CCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhH-------HHHHHHHHHHHHHHHhhCCCCC
Q 002045 730 ---FPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWW-------ENAHEQLRAVLLTLLEELPSHL 799 (976)
Q Consensus 730 ---~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~-------~~~~~~~~~~l~~ll~~~~~~~ 799 (976)
..|+.-+.++.+++| +|+.|+.++-+|+.|++..|+|+||||||-|+ ...+..++.+|+++|++++.++
T Consensus 327 ~~kisffmrkgaD~lskw-vgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRg 405 (1080)
T KOG0732|consen 327 NRKISFFMRKGADCLSKW-VGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRG 405 (1080)
T ss_pred ccccchhhhcCchhhccc-cCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCC
Confidence 568888899999998 89999999999999999999999999999665 3467788999999999999999
Q ss_pred CEEEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCC
Q 002045 800 PILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVE 877 (976)
Q Consensus 800 ~v~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~ 877 (976)
.|+||||||++ +.+++ +.+|++| ..++|++|+.+.|.+|+.++..++ .++....-+..|+..+.+|
T Consensus 406 qVvvigATnRp-da~dp--aLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw---------~~~i~~~l~~~la~~t~gy 473 (1080)
T KOG0732|consen 406 QVVVIGATNRP-DAIDP--ALRRPGRFDREFYFPLPDVDARAKILDIHTRKW---------EPPISRELLLWLAEETSGY 473 (1080)
T ss_pred ceEEEcccCCc-cccch--hhcCCcccceeEeeeCCchHHHHHHHHHhccCC---------CCCCCHHHHHHHHHhcccc
Confidence 99999999999 89999 8888887 888899999999999999887742 2333344567788888444
Q ss_pred CCCchhHHHHHH-HHHHHHHHh-----------Hhh-------hhhhhhcccc-----ccccccccccCCCCCC-----c
Q 002045 878 SGPKASELKAKV-EAEQHALRR-----------LRM-------CLRDVCNRML-----YDKRFSAFHYPVTDED-----A 928 (976)
Q Consensus 878 sg~s~aelk~~~-ea~~~alre-----------Lr~-------~L~~il~~l~-----~~~~~~~F~~PV~~~~-----~ 928 (976)
-+++|+++| +|++.++++ |.+ .+..++..+. ..+....|-.|+.+.. .
T Consensus 474 ---~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ll~~ 550 (1080)
T KOG0732|consen 474 ---GGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPLLPF 550 (1080)
T ss_pred ---chHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceecccch
Confidence 458999999 999998875 111 0011111110 1222445556665432 4
Q ss_pred cchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHH--HHHHHHHHHhhhcCC
Q 002045 929 PNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQ--DVDLIVTNAKVSTCA 976 (976)
Q Consensus 929 pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~--D~~li~~Na~~yn~~ 976 (976)
++|...|+++||+.....|++.+.|.++.+|.. ++.|||.|++.||+.
T Consensus 551 ~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~ 600 (1080)
T KOG0732|consen 551 QDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGG 600 (1080)
T ss_pred HHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCC
Confidence 588999999999999999999999999999999 999999999999973
No 43
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=1.6e-30 Score=310.19 Aligned_cols=245 Identities=39% Similarity=0.638 Sum_probs=217.0
Q ss_pred CCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecch
Q 002045 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (976)
Q Consensus 373 ~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~ 452 (976)
...++|+||+|+++++++|.+++.+ +..++.|..+|...++++||+||||||||++|+++|.+++ ++|+.++++
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~-----~p~i~is~s 250 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE-----VPFFSISGS 250 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCeeeccHH
Confidence 3578999999999999999999887 8899999999999999999999999999999999999985 789999999
Q ss_pred hHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCh---hhhhHHHHHHHHHHHhhccCCCCcEEEEecCCC
Q 002045 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (976)
Q Consensus 453 ~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~---~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~ 529 (976)
++...++|.....++.+|..+....||||||||||.++..++.. .......++.+|+..|+++....+++||++||+
T Consensus 251 ~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~ 330 (638)
T CHL00176 251 EFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNR 330 (638)
T ss_pred HHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCc
Confidence 99999999888999999999999999999999999998765432 233456788999999998888889999999999
Q ss_pred ccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCC
Q 002045 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (976)
Q Consensus 530 ~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~ 609 (976)
++.+|++|+|||||+..|.|+.|+.++|.+||+.+++...... +..+..+|..+.||+++||.++|++|+..+.++..
T Consensus 331 ~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~-d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~- 408 (638)
T CHL00176 331 VDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP-DVSLELIARRTPGFSGADLANLLNEAAILTARRKK- 408 (638)
T ss_pred hHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch-hHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC-
Confidence 9999999999999999999999999999999999998854433 34468999999999999999999999988877643
Q ss_pred ccccCcccccccccceeEeehhhhhcccccc
Q 002045 610 QVYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (976)
Q Consensus 610 ~~~~~~~~~~~~~~~~~it~~df~~al~~i~ 640 (976)
..|+.+||..|+..+.
T Consensus 409 ---------------~~It~~dl~~Ai~rv~ 424 (638)
T CHL00176 409 ---------------ATITMKEIDTAIDRVI 424 (638)
T ss_pred ---------------CCcCHHHHHHHHHHHH
Confidence 2378889999887763
No 44
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.8e-30 Score=276.49 Aligned_cols=219 Identities=23% Similarity=0.318 Sum_probs=189.0
Q ss_pred CCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcCCC
Q 002045 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFP 731 (976)
Q Consensus 652 ~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~~ 731 (976)
-.++|.+|++|+.+.+.+.+. |.-|+..++.|...+++ .++.|+||+||||||||++|+|+|++. +.+
T Consensus 87 I~v~f~DIggLe~v~~~L~e~---VilPlr~pelF~~g~Ll--------~p~kGiLL~GPpG~GKTmlAKA~Akea-ga~ 154 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQEL---VILPLRRPELFAKGKLL--------RPPKGILLYGPPGTGKTMLAKAIAKEA-GAN 154 (386)
T ss_pred ceeehhhccchHHHHHHHHHH---Hhhcccchhhhcccccc--------cCCccceecCCCCchHHHHHHHHHHHc-CCC
Confidence 357899999998887777665 34477778887754432 246799999999999999999999997 899
Q ss_pred eeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHH-------HHHHHHHHHHHHHHhhCCC--CCCEE
Q 002045 732 VHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWE-------NAHEQLRAVLLTLLEELPS--HLPIL 802 (976)
Q Consensus 732 ~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~-------~~~~~~~~~l~~ll~~~~~--~~~v~ 802 (976)
|+.|.++.+.++|+ |++++.++.+|..|.+..||||||||+|++.. .+...+.++|+.+.|++.. ..+|+
T Consensus 155 fInv~~s~lt~KWf-gE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVl 233 (386)
T KOG0737|consen 155 FINVSVSNLTSKWF-GEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVL 233 (386)
T ss_pred cceeeccccchhhH-HHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEE
Confidence 99999999999996 99999999999999999999999999999983 3556778999999999865 34699
Q ss_pred EEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCch
Q 002045 803 LLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPKA 882 (976)
Q Consensus 803 vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~sg~s~ 882 (976)
|+||||+| .+||+ |.+|+.-..++|++|+..+|.+||+.+|. ..+...++|+..+++.++||+|
T Consensus 234 VlgATNRP-~DlDe--AiiRR~p~rf~V~lP~~~qR~kILkviLk----------~e~~e~~vD~~~iA~~t~GySG--- 297 (386)
T KOG0737|consen 234 VLGATNRP-FDLDE--AIIRRLPRRFHVGLPDAEQRRKILKVILK----------KEKLEDDVDLDEIAQMTEGYSG--- 297 (386)
T ss_pred EEeCCCCC-ccHHH--HHHHhCcceeeeCCCchhhHHHHHHHHhc----------ccccCcccCHHHHHHhcCCCcH---
Confidence 99999999 88999 88888889999999999999999999998 4566688999999999977666
Q ss_pred hHHHHHH-HHHHHHHHhH
Q 002045 883 SELKAKV-EAEQHALRRL 899 (976)
Q Consensus 883 aelk~~~-ea~~~alreL 899 (976)
++|+.+| .|+...++++
T Consensus 298 SDLkelC~~Aa~~~ire~ 315 (386)
T KOG0737|consen 298 SDLKELCRLAALRPIREL 315 (386)
T ss_pred HHHHHHHHHHhHhHHHHH
Confidence 9999999 8888888773
No 45
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.2e-31 Score=271.28 Aligned_cols=226 Identities=18% Similarity=0.268 Sum_probs=188.0
Q ss_pred cccccccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHH
Q 002045 645 RGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAIL 724 (976)
Q Consensus 645 r~~~~~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia 724 (976)
..+....+.+.|.++.||+...+.+++. |+-|++++..|.. ...|. +|+||||||||||++||+|+|
T Consensus 121 sAIv~EKPNVkWsDVAGLE~AKeALKEA---VILPIKFPqlFtG-------kR~Pw---rgiLLyGPPGTGKSYLAKAVA 187 (439)
T KOG0739|consen 121 SAIVREKPNVKWSDVAGLEGAKEALKEA---VILPIKFPQLFTG-------KRKPW---RGILLYGPPGTGKSYLAKAVA 187 (439)
T ss_pred hhhhccCCCCchhhhccchhHHHHHHhh---eeecccchhhhcC-------CCCcc---eeEEEeCCCCCcHHHHHHHHH
Confidence 3455678999999999998887777776 4446777765532 33342 589999999999999999999
Q ss_pred HhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH-------HHHHHHHHHHHHHhhCCC
Q 002045 725 HELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLEELPS 797 (976)
Q Consensus 725 ~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~-------~~~~~~~~l~~ll~~~~~ 797 (976)
.+. +..|++++.++|+++| .|++|+.++++|+.|+...|+||||||||++++. ...++...|+..|+++..
T Consensus 188 TEA-nSTFFSvSSSDLvSKW-mGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~ 265 (439)
T KOG0739|consen 188 TEA-NSTFFSVSSSDLVSKW-MGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGN 265 (439)
T ss_pred hhc-CCceEEeehHHHHHHH-hccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhcccc
Confidence 997 5899999999999999 7999999999999999999999999999999843 567888888888888854
Q ss_pred -CCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCC
Q 002045 798 -HLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTV 876 (976)
Q Consensus 798 -~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~ 876 (976)
..+|+|+|+||-| +.||. +.+|++...|+|++|....|..+|+.++-. -.......|+..|++.|+|
T Consensus 266 d~~gvLVLgATNiP-w~LDs--AIRRRFekRIYIPLPe~~AR~~MF~lhlG~---------tp~~LT~~d~~eL~~kTeG 333 (439)
T KOG0739|consen 266 DNDGVLVLGATNIP-WVLDS--AIRRRFEKRIYIPLPEAHARARMFKLHLGD---------TPHVLTEQDFKELARKTEG 333 (439)
T ss_pred CCCceEEEecCCCc-hhHHH--HHHHHhhcceeccCCcHHHhhhhheeccCC---------CccccchhhHHHHHhhcCC
Confidence 7899999999999 89999 888888888889999999999999999862 1233566899999999988
Q ss_pred CCCCchhHHHHHH-HHHHHHHHhHh
Q 002045 877 ESGPKASELKAKV-EAEQHALRRLR 900 (976)
Q Consensus 877 ~sg~s~aelk~~~-ea~~~alreLr 900 (976)
||| ++|.-++ .+.+..+|.++
T Consensus 334 ySG---sDisivVrDalmePvRkvq 355 (439)
T KOG0739|consen 334 YSG---SDISIVVRDALMEPVRKVQ 355 (439)
T ss_pred CCc---CceEEEehhhhhhhHHHhh
Confidence 888 5655555 66677776643
No 46
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.8e-30 Score=258.13 Aligned_cols=218 Identities=19% Similarity=0.234 Sum_probs=189.1
Q ss_pred cCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcCC
Q 002045 651 SRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKF 730 (976)
Q Consensus 651 ~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~ 730 (976)
.++-++..+++|..+++++++.+ .-|.++++.|..+|+.+ |+|+|||||||||||+||+++|+.. .+
T Consensus 141 vPDStYeMiGgLd~QIkeIkEVI---eLPvKHPELF~aLGIaQ---------PKGvlLygppgtGktLlaraVahht-~c 207 (404)
T KOG0728|consen 141 VPDSTYEMIGGLDKQIKEIKEVI---ELPVKHPELFEALGIAQ---------PKGVLLYGPPGTGKTLLARAVAHHT-DC 207 (404)
T ss_pred CCccHHHHhccHHHHHHHHHHHH---hccccCHHHHHhcCCCC---------CcceEEecCCCCchhHHHHHHHhhc-ce
Confidence 45556778899999988887763 34889999999998754 6899999999999999999999997 78
Q ss_pred CeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH-------HHHHHHHHHHHHHhhCC---CCCC
Q 002045 731 PVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLEELP---SHLP 800 (976)
Q Consensus 731 ~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~-------~~~~~~~~l~~ll~~~~---~~~~ 800 (976)
.|+.++.++|+.+| +|+....++.+|-.|+..+|+|+|.||||++.+. ...++.++++.+|.+++ ...+
T Consensus 208 ~firvsgselvqk~-igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkn 286 (404)
T KOG0728|consen 208 TFIRVSGSELVQKY-IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKN 286 (404)
T ss_pred EEEEechHHHHHHH-hhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccc
Confidence 99999999999987 8999999999999999999999999999999843 34566777777776665 4679
Q ss_pred EEEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 002045 801 ILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVES 878 (976)
Q Consensus 801 v~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~s 878 (976)
|-||++||+. +.||+ +.+|++| ..|+|++|+.+.|.+||+.|-++ ......+++..+|+...+.|
T Consensus 287 ikvimatnri-dild~--allrpgridrkiefp~p~e~ar~~ilkihsrk----------mnl~rgi~l~kiaekm~gas 353 (404)
T KOG0728|consen 287 IKVIMATNRI-DILDP--ALLRPGRIDRKIEFPPPNEEARLDILKIHSRK----------MNLTRGINLRKIAEKMPGAS 353 (404)
T ss_pred eEEEEecccc-ccccH--hhcCCCcccccccCCCCCHHHHHHHHHHhhhh----------hchhcccCHHHHHHhCCCCc
Confidence 9999999999 99999 9999998 88999999999999999999873 45566689999998885555
Q ss_pred CCchhHHHHHH-HHHHHHHHh
Q 002045 879 GPKASELKAKV-EAEQHALRR 898 (976)
Q Consensus 879 g~s~aelk~~~-ea~~~alre 898 (976)
| ++++..| +|-++++|+
T Consensus 354 g---aevk~vcteagm~alre 371 (404)
T KOG0728|consen 354 G---AEVKGVCTEAGMYALRE 371 (404)
T ss_pred c---chhhhhhhhhhHHHHHH
Confidence 5 9999999 999999988
No 47
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.4e-29 Score=278.20 Aligned_cols=213 Identities=18% Similarity=0.242 Sum_probs=176.0
Q ss_pred CCCcccchhhh---HHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhc
Q 002045 652 RPLSLVVAPCL---QRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELE 728 (976)
Q Consensus 652 ~~~~~~~i~~l---~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~ 728 (976)
..+.+.++.|. +..|++++++ ++.+..|.++|- ..|+|+||+||||||||+||+|+|.+.
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVef-------LkdP~kftrLGG---------KLPKGVLLvGPPGTGKTlLARAvAGEA- 361 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEF-------LKDPTKFTRLGG---------KLPKGVLLVGPPGTGKTLLARAVAGEA- 361 (752)
T ss_pred cccccccccChHHHHHHHHHHHHH-------hcCcHHhhhccC---------cCCCceEEeCCCCCchhHHHHHhhccc-
Confidence 34567777666 4556666666 567888888873 235899999999999999999999997
Q ss_pred CCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH-------HHHHHHHHHHHHHhhCCCCCCE
Q 002045 729 KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLEELPSHLPI 801 (976)
Q Consensus 729 ~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~-------~~~~~~~~l~~ll~~~~~~~~v 801 (976)
+.||+....+++-.. ++|...+.++.+|..|++.+||||||||||++.+. +..+.+++|+..|++.....+|
T Consensus 362 ~VPFF~~sGSEFdEm-~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGi 440 (752)
T KOG0734|consen 362 GVPFFYASGSEFDEM-FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGI 440 (752)
T ss_pred CCCeEeccccchhhh-hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCce
Confidence 899999999887654 48999999999999999999999999999999843 3345566666777777778899
Q ss_pred EEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCC
Q 002045 802 LLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESG 879 (976)
Q Consensus 802 ~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~sg 879 (976)
||||+||.| +.||+ |..|+|| ..|.|+.|+..-|.+||+.++. +....+++|+..||+-|.|++|
T Consensus 441 IvigATNfp-e~LD~--AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~----------ki~~~~~VD~~iiARGT~GFsG 507 (752)
T KOG0734|consen 441 IVIGATNFP-EALDK--ALTRPGRFDRHVTVPLPDVRGRTEILKLYLS----------KIPLDEDVDPKIIARGTPGFSG 507 (752)
T ss_pred EEEeccCCh-hhhhH--HhcCCCccceeEecCCCCcccHHHHHHHHHh----------cCCcccCCCHhHhccCCCCCch
Confidence 999999999 99999 8888887 7788999999999999999998 3556778999999988855555
Q ss_pred CchhHHHHHH-HHHHHHHHh
Q 002045 880 PKASELKAKV-EAEQHALRR 898 (976)
Q Consensus 880 ~s~aelk~~~-ea~~~alre 898 (976)
++|.+++ +|+..+..+
T Consensus 508 ---AdLaNlVNqAAlkAa~d 524 (752)
T KOG0734|consen 508 ---ADLANLVNQAALKAAVD 524 (752)
T ss_pred ---HHHHHHHHHHHHHHHhc
Confidence 8998888 777666543
No 48
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.2e-30 Score=259.23 Aligned_cols=219 Identities=19% Similarity=0.249 Sum_probs=191.7
Q ss_pred ccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcC
Q 002045 650 HSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEK 729 (976)
Q Consensus 650 ~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~ 729 (976)
..+...+.+|+||.++++++++. |.-|..+.+.|.++|+.+ |+|+|+|||||||||++|+|+|... .
T Consensus 164 ekPtE~YsDiGGldkQIqELvEA---iVLpmth~ekF~~lgi~p---------PKGvLmYGPPGTGKTlmARAcAaqT-~ 230 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEA---IVLPMTHKEKFENLGIRP---------PKGVLMYGPPGTGKTLMARACAAQT-N 230 (424)
T ss_pred cCCcccccccccHHHHHHHHHHH---hccccccHHHHHhcCCCC---------CCceEeeCCCCCcHHHHHHHHHHhc-c
Confidence 35566789999999999999887 566788899999998744 6899999999999999999999987 6
Q ss_pred CCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH-------HHHHHHHHHHHHHhhCC---CCC
Q 002045 730 FPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLEELP---SHL 799 (976)
Q Consensus 730 ~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~-------~~~~~~~~l~~ll~~~~---~~~ 799 (976)
..|+.+-.+.|+..| +|...+.++.+|..|+..+|+||||||+|++... ...++.++++.+|.++. +..
T Consensus 231 aTFLKLAgPQLVQMf-IGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~ 309 (424)
T KOG0652|consen 231 ATFLKLAGPQLVQMF-IGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDD 309 (424)
T ss_pred chHHHhcchHHHhhh-hcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCcc
Confidence 789999999999765 8999999999999999999999999999999732 23456677777776665 467
Q ss_pred CEEEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCC
Q 002045 800 PILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVE 877 (976)
Q Consensus 800 ~v~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~ 877 (976)
.|-|||+||+. +.||| +.+|+|| ..|+|+.|+.+.|.+|+++|-+ +.....++.+++|++.++.+
T Consensus 310 ~vKviAATNRv-DiLDP--ALlRSGRLDRKIEfP~Pne~aRarIlQIHsR----------KMnv~~DvNfeELaRsTddF 376 (424)
T KOG0652|consen 310 RVKVIAATNRV-DILDP--ALLRSGRLDRKIEFPHPNEEARARILQIHSR----------KMNVSDDVNFEELARSTDDF 376 (424)
T ss_pred ceEEEeecccc-cccCH--HHhhcccccccccCCCCChHHHHHHHHHhhh----------hcCCCCCCCHHHHhhccccc
Confidence 89999999999 99999 9999988 8899999999999999999987 46668899999999999877
Q ss_pred CCCchhHHHHHH-HHHHHHHHh
Q 002045 878 SGPKASELKAKV-EAEQHALRR 898 (976)
Q Consensus 878 sg~s~aelk~~~-ea~~~alre 898 (976)
.| +++++.| +|-+-++|+
T Consensus 377 NG---AQcKAVcVEAGMiALRr 395 (424)
T KOG0652|consen 377 NG---AQCKAVCVEAGMIALRR 395 (424)
T ss_pred Cc---hhheeeehhhhHHHHhc
Confidence 77 8999999 999999886
No 49
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-29 Score=255.92 Aligned_cols=223 Identities=17% Similarity=0.245 Sum_probs=191.1
Q ss_pred ccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcC
Q 002045 650 HSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEK 729 (976)
Q Consensus 650 ~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~ 729 (976)
..+.+++.+++|+.-+.+++.+.+ .-|+.+.+.+++.|+-+ |.|+|+|||||||||+||+|+|+.. .
T Consensus 148 ekpdvsy~diggld~qkqeireav---elplt~~~ly~qigidp---------prgvllygppg~gktml~kava~~t-~ 214 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAV---ELPLTHADLYKQIGIDP---------PRGVLLYGPPGTGKTMLAKAVANHT-T 214 (408)
T ss_pred CCCCccccccccchhhHHHHHHHH---hccchHHHHHHHhCCCC---------CcceEEeCCCCCcHHHHHHHHhhcc-c
Confidence 467889999999976666665553 22788888888887533 5799999999999999999999986 6
Q ss_pred CCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH-------HHHHHHHHHHHHHhhCCC---CC
Q 002045 730 FPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLEELPS---HL 799 (976)
Q Consensus 730 ~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~-------~~~~~~~~l~~ll~~~~~---~~ 799 (976)
..||.+..++++.+| .|+....++.+|..|+..+|+|+||||||++... ...++.+.|+.+|.+|.+ ..
T Consensus 215 a~firvvgsefvqky-lgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~ 293 (408)
T KOG0727|consen 215 AAFIRVVGSEFVQKY-LGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTT 293 (408)
T ss_pred hheeeeccHHHHHHH-hccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCccc
Confidence 789999999999998 6999999999999999999999999999999843 445677778888877765 67
Q ss_pred CEEEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCC
Q 002045 800 PILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVE 877 (976)
Q Consensus 800 ~v~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~ 877 (976)
+|-||++||+. +.||| +.+|+|| ..|+|++|+..++.-+|..+.. +....+++|++.+.-.++.-
T Consensus 294 nvkvimatnra-dtldp--allrpgrldrkiefplpdrrqkrlvf~tits----------km~ls~~vdle~~v~rpdki 360 (408)
T KOG0727|consen 294 NVKVIMATNRA-DTLDP--ALLRPGRLDRKIEFPLPDRRQKRLVFSTITS----------KMNLSDEVDLEDLVARPDKI 360 (408)
T ss_pred ceEEEEecCcc-cccCH--hhcCCccccccccCCCCchhhhhhhHHhhhh----------cccCCcccCHHHHhcCcccc
Confidence 89999999999 99999 9999998 8899999999999999999887 46678889999999888555
Q ss_pred CCCchhHHHHHH-HHHHHHHHhHhhh
Q 002045 878 SGPKASELKAKV-EAEQHALRRLRMC 902 (976)
Q Consensus 878 sg~s~aelk~~~-ea~~~alreLr~~ 902 (976)
|| ++|.++| ++-++++|+-++.
T Consensus 361 s~---adi~aicqeagm~avr~nryv 383 (408)
T KOG0727|consen 361 SG---ADINAICQEAGMLAVRENRYV 383 (408)
T ss_pred ch---hhHHHHHHHHhHHHHHhccee
Confidence 55 8999999 9999999986654
No 50
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.96 E-value=1.9e-29 Score=312.65 Aligned_cols=216 Identities=19% Similarity=0.194 Sum_probs=177.7
Q ss_pred CChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhh---------------------
Q 002045 400 LYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKW--------------------- 458 (976)
Q Consensus 400 ~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~--------------------- 458 (976)
..+....++|+.+|+||||+||||||||+||+|||.+++ ++|+.+++++++..+
T Consensus 1617 ~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~-----VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~ 1691 (2281)
T CHL00206 1617 HGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSY-----VPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSD 1691 (2281)
T ss_pred cCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcC-----CceEEEEHHHHhhccccccccccccccccccccccc
Confidence 345566788999999999999999999999999999985 899999999998643
Q ss_pred --------------------HhHHH--HHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC
Q 002045 459 --------------------VGEAE--RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD 516 (976)
Q Consensus 459 --------------------~g~~~--~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~ 516 (976)
++..+ ..++.+|+.|+..+||||||||||+|+.... ....+.+|+..|++..
T Consensus 1692 ~~~~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds------~~ltL~qLLneLDg~~ 1765 (2281)
T CHL00206 1692 DIDRDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES------NYLSLGLLVNSLSRDC 1765 (2281)
T ss_pred ccccccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc------ceehHHHHHHHhcccc
Confidence 12222 3488999999999999999999999986521 1224788999998753
Q ss_pred ---CCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCH--HHHHHHHHHccCCCHHH
Q 002045 517 ---SRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSR--ELKSELAASCVGYCGAD 591 (976)
Q Consensus 517 ---~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~--~~l~~lA~~t~G~s~~d 591 (976)
...+|+||||||+|+.|||||+|||||++.|+++.|+..+|.+++..++...++.+.. ..+..+|..|.||+|+|
T Consensus 1766 ~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGAD 1845 (2281)
T CHL00206 1766 ERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARD 1845 (2281)
T ss_pred ccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHH
Confidence 3568999999999999999999999999999999999999999998765443333332 23588999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCccccCcccccccccceeEeehhhhhcccccccc
Q 002045 592 LKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPA 642 (976)
Q Consensus 592 I~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~i~p~ 642 (976)
|++||++|++.|+++... .|+..+|..|+......
T Consensus 1846 LanLvNEAaliAirq~ks----------------~Id~~~I~~Al~Rq~~g 1880 (2281)
T CHL00206 1846 LVALTNEALSISITQKKS----------------IIDTNTIRSALHRQTWD 1880 (2281)
T ss_pred HHHHHHHHHHHHHHcCCC----------------ccCHHHHHHHHHHHHhh
Confidence 999999999999998643 36777888888776543
No 51
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.8e-30 Score=262.21 Aligned_cols=224 Identities=19% Similarity=0.225 Sum_probs=196.8
Q ss_pred ccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcC
Q 002045 650 HSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEK 729 (976)
Q Consensus 650 ~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~ 729 (976)
..+.-++.+++||+.++|++++.+ .-|+.+++.+..+|+.+ |+|++|||+||||||+||+|+|+.. .
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsv---ELPLthPE~YeemGikp---------PKGVIlyG~PGTGKTLLAKAVANqT-S 244 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESV---ELPLTHPEYYEEMGIKP---------PKGVILYGEPGTGKTLLAKAVANQT-S 244 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhh---cCCCCCHHHHHHcCCCC---------CCeeEEeCCCCCchhHHHHHHhccc-c
Confidence 356778999999999999999874 44889999999988644 6899999999999999999999987 5
Q ss_pred CCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH-------HHHHHHHHHHHHHhhCC---CCC
Q 002045 730 FPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLEELP---SHL 799 (976)
Q Consensus 730 ~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~-------~~~~~~~~l~~ll~~~~---~~~ 799 (976)
..|+++-.++|+.+| .|+..+.++++|+.|...+|+|+||||||++... ...++.++++.||.++. ++.
T Consensus 245 ATFlRvvGseLiQky-lGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrg 323 (440)
T KOG0726|consen 245 ATFLRVVGSELIQKY-LGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRG 323 (440)
T ss_pred hhhhhhhhHHHHHHH-hccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccC
Confidence 789999999999998 6999999999999999999999999999999732 34566777777776664 578
Q ss_pred CEEEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCC
Q 002045 800 PILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVE 877 (976)
Q Consensus 800 ~v~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~ 877 (976)
.|-||+|||+. +.||| +..|++| ..|+|++|+...+.+||++|.. +.....++.++.|....+..
T Consensus 324 DvKvimATnri-e~LDP--aLiRPGrIDrKIef~~pDe~TkkkIf~IHTs----------~Mtl~~dVnle~li~~kddl 390 (440)
T KOG0726|consen 324 DVKVIMATNRI-ETLDP--ALIRPGRIDRKIEFPLPDEKTKKKIFQIHTS----------RMTLAEDVNLEELIMTKDDL 390 (440)
T ss_pred CeEEEEecccc-cccCH--hhcCCCccccccccCCCchhhhceeEEEeec----------ccchhccccHHHHhhccccc
Confidence 99999999999 89999 9999998 8899999999999999999987 46678889999999888777
Q ss_pred CCCchhHHHHHH-HHHHHHHHhHhhhh
Q 002045 878 SGPKASELKAKV-EAEQHALRRLRMCL 903 (976)
Q Consensus 878 sg~s~aelk~~~-ea~~~alreLr~~L 903 (976)
|| ++|+++| +|-+.++|+-|+++
T Consensus 391 SG---AdIkAictEaGllAlRerRm~v 414 (440)
T KOG0726|consen 391 SG---ADIKAICTEAGLLALRERRMKV 414 (440)
T ss_pred cc---ccHHHHHHHHhHHHHHHHHhhc
Confidence 77 9999999 99999999877664
No 52
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.96 E-value=2.2e-27 Score=293.46 Aligned_cols=191 Identities=22% Similarity=0.251 Sum_probs=147.4
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-----CCcEEEEEe
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA-----GQKVSFYMR 449 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~-----~~~~~~~~~ 449 (976)
.-+++.++|++..+..+.+++.. ....+++|+||||||||++|+.+|+.+... .....++.+
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 35778899999988877776544 344689999999999999999999998532 233556777
Q ss_pred cchhHHh--hhHhHHHHHHHHHHHHHHh-cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEec
Q 002045 450 KGADVLS--KWVGEAERQLKLLFEEAQR-NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGA 526 (976)
Q Consensus 450 ~~~~l~~--~~~g~~~~~l~~~f~~a~~-~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~a 526 (976)
+...+.+ .+.|+.+..++.+|+.+.. ..++||||||||.|++.++..+.. .+.+.|+..+ .++.+.||+|
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~---d~~n~Lkp~l----~~G~l~~Iga 322 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQG---DAANLLKPAL----ARGELRTIAA 322 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccc---cHHHHhhHHh----hCCCeEEEEe
Confidence 7777663 6889999999999999875 457899999999998765432221 1222333333 4688999999
Q ss_pred CCCcc-----ccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHccCCC
Q 002045 527 TNRVD-----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW----KQPPSRELKSELAASCVGYC 588 (976)
Q Consensus 527 tn~~~-----~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~----~~~~~~~~l~~lA~~t~G~s 588 (976)
|+..+ .+|++|.| || ..|.|+.|+.+++..||+.+...+ .+.++++.+..++..+.+|.
T Consensus 323 TT~~e~~~~~~~d~AL~r--Rf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTR--RF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred cCHHHHhhhhhccHHHHH--hC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 98754 38999999 99 589999999999999987666543 46678899999999888874
No 53
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.96 E-value=2.7e-28 Score=294.87 Aligned_cols=245 Identities=36% Similarity=0.593 Sum_probs=216.9
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
...+|.++.|.+.+++.|.+++.+ +..+..+..++...+++|||+||||||||++|+++|.+++ ++|+.+++++
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~-----~~f~~is~~~ 220 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK-----VPFFTISGSD 220 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC-----CCEEEEehHH
Confidence 357899999999999999999987 6678888888888899999999999999999999999985 7899999999
Q ss_pred HHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCh---hhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCc
Q 002045 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~---~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~ 530 (976)
+...++|.....++.+|..+....||||||||||.++..++.. .......++++||..|+++.....++||+|||+|
T Consensus 221 ~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p 300 (644)
T PRK10733 221 FVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRP 300 (644)
T ss_pred hHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCCh
Confidence 9999999999999999999999999999999999998776542 2234567899999999999888899999999999
Q ss_pred cccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCc
Q 002045 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQ 610 (976)
Q Consensus 531 ~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~~ 610 (976)
+.||++++|||||++.|.|+.|+.++|.+||+.+++...+..+.+ +..+|..+.||+|+||.++|++|+..|+++..
T Consensus 301 ~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d-~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~-- 377 (644)
T PRK10733 301 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID-AAIIARGTPGFSGADLANLVNEAALFAARGNK-- 377 (644)
T ss_pred hhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCC-HHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCC--
Confidence 999999999999999999999999999999999999887655544 36799999999999999999999999987643
Q ss_pred cccCcccccccccceeEeehhhhhccccccc
Q 002045 611 VYTSDDKFLIDVDSVTVEKYHFIEAMSTITP 641 (976)
Q Consensus 611 ~~~~~~~~~~~~~~~~it~~df~~al~~i~p 641 (976)
..|+..||..|+..+.+
T Consensus 378 --------------~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 378 --------------RVVSMVEFEKAKDKIMM 394 (644)
T ss_pred --------------CcccHHHHHHHHHHHhc
Confidence 24778888888876654
No 54
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.96 E-value=7.5e-28 Score=260.58 Aligned_cols=220 Identities=20% Similarity=0.267 Sum_probs=173.7
Q ss_pred CCCcccc-cChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 375 SVSFDDI-GGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 375 ~~~~~~i-~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
..+|+.| +|+--...-+..++... ........++++|.+++||||||||||++|+++|++++ ++|+.+++.+
T Consensus 111 ~~~f~~~~g~~~~~p~f~dk~~~hi--~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg-----~~~i~vsa~e 183 (413)
T PLN00020 111 TRSFDNLVGGYYIAPAFMDKVAVHI--AKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMG-----IEPIVMSAGE 183 (413)
T ss_pred hcchhhhcCccccCHHHHHHHHHHH--HhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcC-----CCeEEEEHHH
Confidence 4567776 55544444444443321 12233346789999999999999999999999999996 7899999999
Q ss_pred HHhhhHhHHHHHHHHHHHHHHh-----cCCcEEEEccccccCCCCCChhhhhHHHHH-HHHHHHhhcc------------
Q 002045 454 VLSKWVGEAERQLKLLFEEAQR-----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIV-STLLALMDGL------------ 515 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~~-----~~p~VL~iDEid~L~~~r~~~~~~~~~~~~-~~Ll~~ld~~------------ 515 (976)
+.++|+|++++.++.+|..|.. .+||||||||||++++.+...+.....+++ .+|+++||+.
T Consensus 184 L~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~ 263 (413)
T PLN00020 184 LESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREK 263 (413)
T ss_pred hhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCcccccccccccc
Confidence 9999999999999999999975 469999999999999988755555455555 7999998753
Q ss_pred CCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccC----CCHHH
Q 002045 516 DSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVG----YCGAD 591 (976)
Q Consensus 516 ~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G----~s~~d 591 (976)
.....|+||+|||+|+.||++|+|+|||+..| ..|+.++|.+||+.+++..++. ...+..|+..+.| |.|+-
T Consensus 264 ~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~--~~dv~~Lv~~f~gq~~Df~GAl 339 (413)
T PLN00020 264 EEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS--REDVVKLVDTFPGQPLDFFGAL 339 (413)
T ss_pred ccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC--HHHHHHHHHcCCCCCchhhhHH
Confidence 23567999999999999999999999999965 5899999999999999987654 4556788888877 56665
Q ss_pred HHHHHHHHHHHHHH
Q 002045 592 LKALCTEAAIRAFR 605 (976)
Q Consensus 592 I~~l~~~A~~~a~~ 605 (976)
-..+..++...-+.
T Consensus 340 rar~yd~~v~~~i~ 353 (413)
T PLN00020 340 RARVYDDEVRKWIA 353 (413)
T ss_pred HHHHHHHHHHHHHH
Confidence 55665555544444
No 55
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.95 E-value=9.3e-29 Score=250.63 Aligned_cols=211 Identities=18% Similarity=0.262 Sum_probs=170.8
Q ss_pred cCCCcccchhhhHHHHH---HHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhh
Q 002045 651 SRPLSLVVAPCLQRHLQ---KAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHEL 727 (976)
Q Consensus 651 ~~~~~~~~i~~l~~~l~---~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l 727 (976)
.+.+.++++-|.+...+ -++++ +..++.|..+. |+.+|||||||||||++|+|+|.+.
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~~y-------LenPe~Fg~WA------------PknVLFyGppGTGKTm~Akalane~ 175 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIMEY-------LENPERFGDWA------------PKNVLFYGPPGTGKTMMAKALANEA 175 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHHHH-------hhChHHhcccC------------cceeEEECCCCccHHHHHHHHhccc
Confidence 44566666655544433 34454 44566665553 4789999999999999999999998
Q ss_pred cCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH--------HHHHHHHHHHHHHhhCCCCC
Q 002045 728 EKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN--------AHEQLRAVLLTLLEELPSHL 799 (976)
Q Consensus 728 ~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~--------~~~~~~~~l~~ll~~~~~~~ 799 (976)
+.|++.++..+|++.| +|...+.++++|+.|++.+|||+||||+|++.-. .-.+++++|++.|+++..+.
T Consensus 176 -kvp~l~vkat~liGeh-VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~ene 253 (368)
T COG1223 176 -KVPLLLVKATELIGEH-VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENE 253 (368)
T ss_pred -CCceEEechHHHHHHH-hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCC
Confidence 8999999999999886 8999999999999999999999999999999722 33567889999999999999
Q ss_pred CEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCC
Q 002045 800 PILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESG 879 (976)
Q Consensus 800 ~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~sg 879 (976)
+|+.||+||+| +.||+ +.+-++..-|+|.+|+.++|.+|++..++. .+...+.++..|+..+.+.||
T Consensus 254 GVvtIaaTN~p-~~LD~--aiRsRFEeEIEF~LP~~eEr~~ile~y~k~----------~Plpv~~~~~~~~~~t~g~Sg 320 (368)
T COG1223 254 GVVTIAATNRP-ELLDP--AIRSRFEEEIEFKLPNDEERLEILEYYAKK----------FPLPVDADLRYLAAKTKGMSG 320 (368)
T ss_pred ceEEEeecCCh-hhcCH--HHHhhhhheeeeeCCChHHHHHHHHHHHHh----------CCCccccCHHHHHHHhCCCCc
Confidence 99999999999 99999 555555588999999999999999999883 455667889999999977777
Q ss_pred CchhHHHHHH-HHHHH-HHHh
Q 002045 880 PKASELKAKV-EAEQH-ALRR 898 (976)
Q Consensus 880 ~s~aelk~~~-ea~~~-alre 898 (976)
.+|+..+ ..+.| ++.+
T Consensus 321 ---RdikekvlK~aLh~Ai~e 338 (368)
T COG1223 321 ---RDIKEKVLKTALHRAIAE 338 (368)
T ss_pred ---hhHHHHHHHHHHHHHHHh
Confidence 8887766 44443 3443
No 56
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.95 E-value=1.9e-26 Score=286.99 Aligned_cols=433 Identities=19% Similarity=0.196 Sum_probs=269.7
Q ss_pred CCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-----CCcEEEEEec
Q 002045 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA-----GQKVSFYMRK 450 (976)
Q Consensus 376 ~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~-----~~~~~~~~~~ 450 (976)
-.++.|+|.+..++.+.+++.. ...+++||+||||||||++|+++|..+... .....++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 3578899999999999888764 456789999999999999999999998532 2346788899
Q ss_pred chhHH--hhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCC
Q 002045 451 GADVL--SKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (976)
Q Consensus 451 ~~~l~--~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn 528 (976)
...++ .+|.|+.+..++.+|+.+....++||||||||.|++.+...+.. .+.+.|...+ .++.+.+|++|+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~---~~a~lLkp~l----~rg~l~~IgaTt 315 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAI---DAANILKPAL----ARGELQCIGATT 315 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcc---cHHHHhHHHH----hCCCcEEEEeCC
Confidence 88887 47889999999999999988888999999999999765433221 2222233333 367899999998
Q ss_pred Ccc-----ccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHccCCCHH-----HHHH
Q 002045 529 RVD-----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK----WKQPPSRELKSELAASCVGYCGA-----DLKA 594 (976)
Q Consensus 529 ~~~-----~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~----~~~~~~~~~l~~lA~~t~G~s~~-----dI~~ 594 (976)
..+ ..+++|.+ ||. .|.++.|+.++...|++..... ..+.++++.+..++..+.+|.+. -.-.
T Consensus 316 ~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaid 392 (821)
T CHL00095 316 LDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAID 392 (821)
T ss_pred HHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHH
Confidence 864 37899999 895 5789999999999999865432 34557888888888888887542 2334
Q ss_pred HHHHHHHHHHHhh--CCc-----------cccCccccc----------------------------------ccccceeE
Q 002045 595 LCTEAAIRAFREK--YPQ-----------VYTSDDKFL----------------------------------IDVDSVTV 627 (976)
Q Consensus 595 l~~~A~~~a~~~~--~~~-----------~~~~~~~~~----------------------------------~~~~~~~i 627 (976)
++.+|+...-... .+. +........ .......|
T Consensus 393 lld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 472 (821)
T CHL00095 393 LLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKKTEEEKRLEVPVV 472 (821)
T ss_pred HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcc
Confidence 4444443221110 000 000000000 00001223
Q ss_pred eehhhhhcccccccccccccccccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhh----hhccCCCCCCcccC
Q 002045 628 EKYHFIEAMSTITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKL----CMLSHGSAIPLVYR 703 (976)
Q Consensus 628 t~~df~~al~~i~p~~~r~~~~~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~----~~~~~g~~~p~~~~ 703 (976)
+..|+...+..++... ...+.... ...|..+...+.+- ...+......+ .....|...|-++.
T Consensus 473 ~~~~i~~~~~~~tgip-------~~~~~~~~----~~~l~~l~~~L~~~--v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~ 539 (821)
T CHL00095 473 TEEDIAEIVSAWTGIP-------VNKLTKSE----SEKLLHMEETLHKR--IIGQDEAVVAVSKAIRRARVGLKNPNRPI 539 (821)
T ss_pred CHHHHHHHHHHHHCCC-------chhhchhH----HHHHHHHHHHhcCc--CcChHHHHHHHHHHHHHHhhcccCCCCCc
Confidence 4444444433332210 00011011 11122333332221 12233222221 11223444443333
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcC--CCeeecCCcccccCC-----------CCCChHHHHHHHHHHHHhcCCceEec
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEK--FPVHSLGLPALLSDP-----------SAKTPEEALVHIFGEARRTTPSILYI 770 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~--~~~~~~~~~~l~~~~-----------~~g~~e~~~~~~f~~a~~~~p~ilfi 770 (976)
..+||+||+|||||++|+++|+.+.+ .+++.++++++.... |+|-.+ ...+...++..+.+||||
T Consensus 540 ~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~Vvll 617 (821)
T CHL00095 540 ASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLF 617 (821)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEE
Confidence 35899999999999999999998743 578888887653211 122211 224555566666699999
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhCC---------CCCCEEEEEecCCCcccCcC-----CC------------------
Q 002045 771 PQFNLWWENAHEQLRAVLLTLLEELP---------SHLPILLLGSSSVPLAEVEG-----DP------------------ 818 (976)
Q Consensus 771 DEid~l~~~~~~~~~~~l~~ll~~~~---------~~~~v~vi~ttn~~~~~Ld~-----~~------------------ 818 (976)
||||++.+. +.+.|+++|+.-. ++.+.+||+|||.....+.. ..
T Consensus 618 Deieka~~~----v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~ 693 (821)
T CHL00095 618 DEIEKAHPD----IFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNL 693 (821)
T ss_pred CChhhCCHH----HHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHH
Confidence 999987654 4556666666421 25688999999976332110 00
Q ss_pred -----------CCCcCCccEEEecCCCHHHHHHHHHHHHHHHH
Q 002045 819 -----------STVFPLRSVYQVEKPSTEDRSLFLGRLIEAAV 850 (976)
Q Consensus 819 -----------~~~~~~r~~i~v~~P~~~er~~i~~~~l~~~~ 850 (976)
.++-+...||.|.+.+.++..+|++..+....
T Consensus 694 ~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~ 736 (821)
T CHL00095 694 VNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLF 736 (821)
T ss_pred HHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 00111126888999999999999999998643
No 57
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.3e-29 Score=253.25 Aligned_cols=221 Identities=16% Similarity=0.206 Sum_probs=187.9
Q ss_pred ccccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhh
Q 002045 648 TVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHEL 727 (976)
Q Consensus 648 ~~~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l 727 (976)
.-..+.+++.+++|-+++++.+.+.+ .-|+.+++.|.++|+-+ |+|+|+|||||||||++|+|+|+..
T Consensus 168 veekpdvty~dvggckeqieklrevv---e~pll~perfv~lgidp---------pkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVV---ELPLLHPERFVNLGIDP---------PKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHH---hccccCHHHHhhcCCCC---------CCceEEeCCCCCchhHHHHHHhccc
Confidence 34578899999999998877666553 23788899999998644 6899999999999999999999997
Q ss_pred cCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH-------HHHHHHHHHHHHHhhC---CC
Q 002045 728 EKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLEEL---PS 797 (976)
Q Consensus 728 ~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~-------~~~~~~~~l~~ll~~~---~~ 797 (976)
+..||.+-.++|+.+| +|+....++++|+.|+...-|||||||||++.+. ...++.++++.++.++ .+
T Consensus 236 -dacfirvigselvqky-vgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdp 313 (435)
T KOG0729|consen 236 -DACFIRVIGSELVQKY-VGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDP 313 (435)
T ss_pred -CceEEeehhHHHHHHH-hhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCC
Confidence 6789999999999987 8999999999999999999999999999999743 3356666666665555 56
Q ss_pred CCCEEEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCC
Q 002045 798 HLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPT 875 (976)
Q Consensus 798 ~~~v~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~ 875 (976)
+.+|-|+.+||+| +.||+ +.+|++| ..++|.+|+.+.|.+||++|.+ ......++-|+.|++.++
T Consensus 314 rgnikvlmatnrp-dtldp--allrpgrldrkvef~lpdlegrt~i~kihak----------smsverdir~ellarlcp 380 (435)
T KOG0729|consen 314 RGNIKVLMATNRP-DTLDP--ALLRPGRLDRKVEFGLPDLEGRTHIFKIHAK----------SMSVERDIRFELLARLCP 380 (435)
T ss_pred CCCeEEEeecCCC-CCcCH--hhcCCcccccceeccCCcccccceeEEEecc----------ccccccchhHHHHHhhCC
Confidence 8899999999999 99999 9999998 8899999999999999999887 244456788899998885
Q ss_pred CCCCCchhHHHHHH-HHHHHHHHh
Q 002045 876 VESGPKASELKAKV-EAEQHALRR 898 (976)
Q Consensus 876 ~~sg~s~aelk~~~-ea~~~alre 898 (976)
...| ++|...| +|-+++++.
T Consensus 381 nstg---aeirsvcteagmfaira 401 (435)
T KOG0729|consen 381 NSTG---AEIRSVCTEAGMFAIRA 401 (435)
T ss_pred CCcc---hHHHHHHHHhhHHHHHH
Confidence 5555 9999999 999999876
No 58
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.1e-26 Score=274.85 Aligned_cols=434 Identities=20% Similarity=0.228 Sum_probs=280.6
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-----CCcEEEEEe
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA-----GQKVSFYMR 449 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~-----~~~~~~~~~ 449 (976)
.-.++-++|.++.++.+.+++.. +..++-+|+|+||+|||.+|..+|...... .....++++
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 34577799999999999998876 455678889999999999999999988543 245667888
Q ss_pred cchhHHh--hhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecC
Q 002045 450 KGADVLS--KWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (976)
Q Consensus 450 ~~~~l~~--~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~at 527 (976)
+...++. +|-|+.+.+++.+++++....+.||||||||.|++.....++ .-...+-|... ..++.+-+|++|
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~--a~DAaNiLKPa----LARGeL~~IGAT 306 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG--AMDAANLLKPA----LARGELRCIGAT 306 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc--ccchhhhhHHH----HhcCCeEEEEec
Confidence 8887775 789999999999999999888999999999999987765442 22222333333 347889999999
Q ss_pred CCccc-----cchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHccCCCH-----HHHH
Q 002045 528 NRVDA-----IDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW----KQPPSRELKSELAASCVGYCG-----ADLK 593 (976)
Q Consensus 528 n~~~~-----ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~----~~~~~~~~l~~lA~~t~G~s~-----~dI~ 593 (976)
+.-+. -|+||.| || ..|.+..|+.++-..||+.+-..+ ++.+++..+...+..+..|-. .-.-
T Consensus 307 T~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAI 383 (786)
T COG0542 307 TLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAI 383 (786)
T ss_pred cHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHH
Confidence 77443 5899999 99 678899999999999998766554 456677777766666555432 1222
Q ss_pred HHHHHHHHHHHHhhC-Cc-----------cc-------cCc---cccccc----------------ccceeEeehhhhhc
Q 002045 594 ALCTEAAIRAFREKY-PQ-----------VY-------TSD---DKFLID----------------VDSVTVEKYHFIEA 635 (976)
Q Consensus 594 ~l~~~A~~~a~~~~~-~~-----------~~-------~~~---~~~~~~----------------~~~~~it~~df~~a 635 (976)
.|+.+|+........ +. +. ... ....++ ... .++.+++.+.
T Consensus 384 DLiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~Ia~v 462 (786)
T COG0542 384 DLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEA-EVDEDDIAEV 462 (786)
T ss_pred HHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHhh-ccCHHHHHHH
Confidence 334444432222110 00 00 000 000000 000 0222333333
Q ss_pred ccccccccccccccccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHh----hhhccCCCCCCcccCCceeeccC
Q 002045 636 MSTITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTK----LCMLSHGSAIPLVYRPRLLLCGS 711 (976)
Q Consensus 636 l~~i~p~~~r~~~~~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~----~~~~~~g~~~p~~~~~~~Ll~G~ 711 (976)
+..++.. +...+.-.. ...|..+-..+.+- ...+..+... +.....|...|-++...+||.||
T Consensus 463 v~~~TgI-------Pv~~l~~~e----~~kll~le~~L~~r--ViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GP 529 (786)
T COG0542 463 VARWTGI-------PVAKLLEDE----KEKLLNLERRLKKR--VIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGP 529 (786)
T ss_pred HHHHHCC-------Chhhhchhh----HHHHHHHHHHHhcc--eeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCC
Confidence 3333211 000000011 11222222222110 1222222222 22335677777665667999999
Q ss_pred CCCcHhhHHHHHHHhhcC--CCeeecCCccccc------------CCCCCChHHHHHHHHHHHHhcCCceEeccccchhH
Q 002045 712 EGTGVDHLGPAILHELEK--FPVHSLGLPALLS------------DPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWW 777 (976)
Q Consensus 712 pGtGKT~lA~aia~~l~~--~~~~~~~~~~l~~------------~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~ 777 (976)
+|+|||.||+++|..|.+ ..+++++|++++. +| +|--+ -..+.+..++.+.|||+||||++
T Consensus 530 TGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGY-VGyee--GG~LTEaVRr~PySViLlDEIEK-- 604 (786)
T COG0542 530 TGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGY-VGYEE--GGQLTEAVRRKPYSVILLDEIEK-- 604 (786)
T ss_pred CcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCC-ceecc--ccchhHhhhcCCCeEEEechhhh--
Confidence 999999999999999855 6899999987643 23 34322 33455667777789999999998
Q ss_pred HHHHHHHHHHHHHHHhhC--C-------CCCCEEEEEecCCCcccCcC-------------------CCCCCcC------
Q 002045 778 ENAHEQLRAVLLTLLEEL--P-------SHLPILLLGSSSVPLAEVEG-------------------DPSTVFP------ 823 (976)
Q Consensus 778 ~~~~~~~~~~l~~ll~~~--~-------~~~~v~vi~ttn~~~~~Ld~-------------------~~~~~~~------ 823 (976)
++..+++.|++.|+.- . ++.+.+||+|||.-...+.. .+...|+
T Consensus 605 --AHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNR 682 (786)
T COG0542 605 --AHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNR 682 (786)
T ss_pred --cCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhh
Confidence 5567788888888752 1 26789999999987443332 1111222
Q ss_pred CccEEEecCCCHHHHHHHHHHHHHHHHh
Q 002045 824 LRSVYQVEKPSTEDRSLFLGRLIEAAVS 851 (976)
Q Consensus 824 ~r~~i~v~~P~~~er~~i~~~~l~~~~~ 851 (976)
...||.|.+.+.+...+|+...|.....
T Consensus 683 id~II~F~~L~~~~l~~Iv~~~L~~l~~ 710 (786)
T COG0542 683 IDEIIPFNPLSKEVLERIVDLQLNRLAK 710 (786)
T ss_pred cccEEeccCCCHHHHHHHHHHHHHHHHH
Confidence 1268999999999999999999986544
No 59
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.1e-27 Score=280.77 Aligned_cols=217 Identities=22% Similarity=0.289 Sum_probs=183.8
Q ss_pred cCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcCC
Q 002045 651 SRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKF 730 (976)
Q Consensus 651 ~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~ 730 (976)
...+.+.++.|..+..+++++.+ .-+++++.|.++|... |+|+||+||||||||+||||+|.+. ++
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V----~fLKNP~~Y~~lGAKi---------PkGvLL~GPPGTGKTLLAKAiAGEA-gV 370 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFV----KFLKNPEQYQELGAKI---------PKGVLLVGPPGTGKTLLAKAIAGEA-GV 370 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHH----HHhcCHHHHHHcCCcC---------cCceEEECCCCCcHHHHHHHHhccc-CC
Confidence 44578888888876666666553 2367899999998533 5899999999999999999999996 99
Q ss_pred CeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH-----------HHHHHHHHHHHHHhhCCCCC
Q 002045 731 PVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-----------AHEQLRAVLLTLLEELPSHL 799 (976)
Q Consensus 731 ~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~-----------~~~~~~~~l~~ll~~~~~~~ 799 (976)
||++++.++++..+ +|.-...++.+|..|+..+|||+||||||++... ..+..+++|+..||+.....
T Consensus 371 PF~svSGSEFvE~~-~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 371 PFFSVSGSEFVEMF-VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred ceeeechHHHHHHh-cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 99999999999775 6666889999999999999999999999998732 23566788888888888888
Q ss_pred CEEEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCC-CCCCCCCCCCCCCCC
Q 002045 800 PILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKP-QESVSLPELPKVPTV 876 (976)
Q Consensus 800 ~v~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~-~~~~dl~~La~~~~~ 876 (976)
.|+|||+||++ +.||+ +.+|+|| ..|++++|+...|..||+.|+.+ .+. .++++|..|+..|++
T Consensus 450 ~vi~~a~tnr~-d~ld~--allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~----------~~~~~e~~dl~~~a~~t~g 516 (774)
T KOG0731|consen 450 GVIVLAATNRP-DILDP--ALLRPGRFDRQIQIDLPDVKGRASILKVHLRK----------KKLDDEDVDLSKLASLTPG 516 (774)
T ss_pred cEEEEeccCCc-cccCH--HhcCCCccccceeccCCchhhhHHHHHHHhhc----------cCCCcchhhHHHHHhcCCC
Confidence 99999999999 99999 8888888 88889999999999999999983 333 467888889999966
Q ss_pred CCCCchhHHHHHH-HHHHHHHHh
Q 002045 877 ESGPKASELKAKV-EAEQHALRR 898 (976)
Q Consensus 877 ~sg~s~aelk~~~-ea~~~alre 898 (976)
++| ++|.++| +++..+.|+
T Consensus 517 f~g---adl~n~~neaa~~a~r~ 536 (774)
T KOG0731|consen 517 FSG---ADLANLCNEAALLAARK 536 (774)
T ss_pred CcH---HHHHhhhhHHHHHHHHh
Confidence 666 9999999 888888874
No 60
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.94 E-value=4e-25 Score=275.90 Aligned_cols=191 Identities=24% Similarity=0.280 Sum_probs=144.7
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-----CCcEEEEEe
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA-----GQKVSFYMR 449 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~-----~~~~~~~~~ 449 (976)
.-.++.++|++..++.+.+++.. +..++++|+||||||||++|+++|..+... .....++.+
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 34678899999988888777654 445689999999999999999999987432 123566777
Q ss_pred cchhHH--hhhHhHHHHHHHHHHHHHHh-cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEec
Q 002045 450 KGADVL--SKWVGEAERQLKLLFEEAQR-NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGA 526 (976)
Q Consensus 450 ~~~~l~--~~~~g~~~~~l~~~f~~a~~-~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~a 526 (976)
+...++ .+|.|+.+..++.+|..+.. ..++||||||||.|++.+...+. ..+.+.|... ..++.+.||++
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~---~d~~~~Lk~~----l~~g~i~~Iga 308 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGA---MDAGNMLKPA----LARGELHCIGA 308 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcch---hHHHHHhchh----hhcCceEEEEe
Confidence 777765 46889999999999998865 35889999999999875433221 1222333332 34678999999
Q ss_pred CCCcc-----ccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHHccCCC
Q 002045 527 TNRVD-----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWK----QPPSRELKSELAASCVGYC 588 (976)
Q Consensus 527 tn~~~-----~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~----~~~~~~~l~~lA~~t~G~s 588 (976)
|+..+ .+|++|.| ||. .|.++.|+.+++..||+.+...+. +.+.+..+..++..+.+|.
T Consensus 309 Tt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi 376 (852)
T TIGR03346 309 TTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYI 376 (852)
T ss_pred CcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccc
Confidence 99864 37999999 995 588999999999999998766643 4456777777777777764
No 61
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.94 E-value=3.2e-25 Score=275.30 Aligned_cols=189 Identities=22% Similarity=0.266 Sum_probs=141.8
Q ss_pred CCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-----CCcEEEEEec
Q 002045 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA-----GQKVSFYMRK 450 (976)
Q Consensus 376 ~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~-----~~~~~~~~~~ 450 (976)
-.++.++|++..++.+.+++.. ....+++|+||||||||++|+++|..+... .....++.++
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 4678899999988888777654 345689999999999999999999998532 1245677777
Q ss_pred chhHH--hhhHhHHHHHHHHHHHHHHh-cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecC
Q 002045 451 GADVL--SKWVGEAERQLKLLFEEAQR-NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (976)
Q Consensus 451 ~~~l~--~~~~g~~~~~l~~~f~~a~~-~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~at 527 (976)
...++ .+|.|+.+..++.+|+.+.. ..++||||||+|.|++.+...+.. ...+.|... ..++.+.||++|
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~---d~~~~lkp~----l~~g~l~~IgaT 314 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAM---DAGNMLKPA----LARGELHCVGAT 314 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccch---hHHHHhcch----hhcCCCeEEEcC
Confidence 77766 46889999999999998654 568899999999998765433321 222233333 357899999999
Q ss_pred CCccc-----cchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHccCC
Q 002045 528 NRVDA-----IDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW----KQPPSRELKSELAASCVGY 587 (976)
Q Consensus 528 n~~~~-----ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~----~~~~~~~~l~~lA~~t~G~ 587 (976)
+..+. +|++|.| ||. .|.++.|+.+++..||+.+...+ ++.+.+..+...+..+.+|
T Consensus 315 t~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry 380 (857)
T PRK10865 315 TLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRY 380 (857)
T ss_pred CCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhcc
Confidence 98763 8999999 996 57899999999999998877654 3455566655554554444
No 62
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.94 E-value=1.8e-26 Score=262.42 Aligned_cols=219 Identities=18% Similarity=0.244 Sum_probs=178.3
Q ss_pred ccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcC
Q 002045 650 HSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEK 729 (976)
Q Consensus 650 ~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~ 729 (976)
..+.++|.+++|++.+.+++.+.+ ..++..++.|.++|+.+ ++|+||+||||||||++|+++|+.+ +
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v---~~pl~~~~~~~~~Gl~~---------pkgvLL~GppGTGKT~LAkalA~~l-~ 204 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAV---ELPLTCPELYEQIGIDP---------PRGVLLYGPPGTGKTMLAKAVAHHT-T 204 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHH---HHHhcCHHHHHhcCCCC---------CceEEEECCCCCCHHHHHHHHHHhc-C
Confidence 367789999999988888777663 22566778888877532 5799999999999999999999998 7
Q ss_pred CCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH-------HHHHHHHHHHHHH---hhCCCCC
Q 002045 730 FPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLL---EELPSHL 799 (976)
Q Consensus 730 ~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~-------~~~~~~~~l~~ll---~~~~~~~ 799 (976)
.+|+.+..+.++.+| .|+++..++.+|..|+...||||||||||.++.. ....+.+.+..+| +++....
T Consensus 205 ~~fi~i~~s~l~~k~-~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~ 283 (398)
T PTZ00454 205 ATFIRVVGSEFVQKY-LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT 283 (398)
T ss_pred CCEEEEehHHHHHHh-cchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC
Confidence 899999998888886 7999999999999999999999999999998742 1223344444554 4444567
Q ss_pred CEEEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCC
Q 002045 800 PILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVE 877 (976)
Q Consensus 800 ~v~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~ 877 (976)
+|+||+|||++ +.||+ +.++++| ..|+|++|+.++|..||+.++. +.....++++..|+..+.++
T Consensus 284 ~v~VI~aTN~~-d~LDp--AllR~GRfd~~I~~~~P~~~~R~~Il~~~~~----------~~~l~~dvd~~~la~~t~g~ 350 (398)
T PTZ00454 284 NVKVIMATNRA-DTLDP--ALLRPGRLDRKIEFPLPDRRQKRLIFQTITS----------KMNLSEEVDLEDFVSRPEKI 350 (398)
T ss_pred CEEEEEecCCc-hhCCH--HHcCCCcccEEEEeCCcCHHHHHHHHHHHHh----------cCCCCcccCHHHHHHHcCCC
Confidence 89999999999 89999 7777555 7889999999999999998887 34456678999999998555
Q ss_pred CCCchhHHHHHH-HHHHHHHHh
Q 002045 878 SGPKASELKAKV-EAEQHALRR 898 (976)
Q Consensus 878 sg~s~aelk~~~-ea~~~alre 898 (976)
++++|+++| +|.+.++++
T Consensus 351 ---sgaDI~~l~~eA~~~A~r~ 369 (398)
T PTZ00454 351 ---SAADIAAICQEAGMQAVRK 369 (398)
T ss_pred ---CHHHHHHHHHHHHHHHHHc
Confidence 559999999 888888877
No 63
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6.5e-27 Score=257.10 Aligned_cols=222 Identities=20% Similarity=0.286 Sum_probs=186.9
Q ss_pred cCCCccc--chhhhHHHHHHHhhh--hcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHh
Q 002045 651 SRPLSLV--VAPCLQRHLQKAMNY--ISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHE 726 (976)
Q Consensus 651 ~~~~~~~--~i~~l~~~l~~~~~~--l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~ 726 (976)
.+...+. .|+||......+... ..++|| ++...++|+.+ -+|+|||||||||||++|+.|...
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFp----p~vie~lGi~H---------VKGiLLyGPPGTGKTLiARqIGkM 279 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFP----PEVIEQLGIKH---------VKGILLYGPPGTGKTLIARQIGKM 279 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCC----HHHHHHcCccc---------eeeEEEECCCCCChhHHHHHHHHH
Confidence 3444444 468898777766543 355665 45667777644 469999999999999999999999
Q ss_pred hcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHh--------cCCceEeccccchhHHH---------HHHHHHHHHH
Q 002045 727 LEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARR--------TTPSILYIPQFNLWWEN---------AHEQLRAVLL 789 (976)
Q Consensus 727 l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~--------~~p~ilfiDEid~l~~~---------~~~~~~~~l~ 789 (976)
|+.-.--.++.|+++++| +|++|+++|.+|..|+. ..-.||+|||||+++.. +++.++++|+
T Consensus 280 LNArePKIVNGPeIL~KY-VGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLL 358 (744)
T KOG0741|consen 280 LNAREPKIVNGPEILNKY-VGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLL 358 (744)
T ss_pred hcCCCCcccCcHHHHHHh-hcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHH
Confidence 988888889999999997 89999999999999875 22359999999999943 7899999999
Q ss_pred HHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCC
Q 002045 790 TLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSL 867 (976)
Q Consensus 790 ~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl 867 (976)
+-|++++.-.+|+|||.||+. +.+|+ |.+|+|| -.+++.+|++..|.+||++|..+... +.....++|+
T Consensus 359 sKmDGVeqLNNILVIGMTNR~-DlIDE--ALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre------~~~l~~dVdl 429 (744)
T KOG0741|consen 359 SKMDGVEQLNNILVIGMTNRK-DLIDE--ALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRE------NNKLSADVDL 429 (744)
T ss_pred HhcccHHhhhcEEEEeccCch-hhHHH--HhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhh------cCCCCCCcCH
Confidence 999999998999999999999 99999 9999999 56688999999999999999986543 6677889999
Q ss_pred CCCCCCCCCCCCCchhHHHHHH-HHHHHHHHh
Q 002045 868 PELPKVPTVESGPKASELKAKV-EAEQHALRR 898 (976)
Q Consensus 868 ~~La~~~~~~sg~s~aelk~~~-ea~~~alre 898 (976)
.+||..|+.||| +||+-++ .|...|+.+
T Consensus 430 ~elA~lTKNfSG---AEleglVksA~S~A~nR 458 (744)
T KOG0741|consen 430 KELAALTKNFSG---AELEGLVKSAQSFAMNR 458 (744)
T ss_pred HHHHHHhcCCch---hHHHHHHHHHHHHHHHh
Confidence 999999988888 8999999 556666665
No 64
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.93 E-value=9.5e-26 Score=258.06 Aligned_cols=221 Identities=20% Similarity=0.273 Sum_probs=179.3
Q ss_pred ccccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhh
Q 002045 648 TVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHEL 727 (976)
Q Consensus 648 ~~~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l 727 (976)
....+.+.|.+++|++..++++.+.+. .++.+++.|..+|+.+ ++++||+||||||||++|+++|+.+
T Consensus 122 ~~~~p~~~~~di~Gl~~~~~~l~~~i~---~pl~~~~~~~~~g~~~---------p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 122 VIESPNVTYEDIGGLEEQIREVREAVE---LPLKKPELFEEVGIEP---------PKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred ecCCCCCCHHHhCCcHHHHHHHHHHHH---HHhhCHHHHHhcCCCC---------CCceEEECCCCCChHHHHHHHHHHh
Confidence 345678899999999998888877642 3566777777776432 5799999999999999999999998
Q ss_pred cCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH-------HHHHHHHHHHHHHhhC---CC
Q 002045 728 EKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLEEL---PS 797 (976)
Q Consensus 728 ~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~-------~~~~~~~~l~~ll~~~---~~ 797 (976)
+.+|+.+.+++++.+| .|+++..++.+|..|+...||||||||||.++.. ....+.+.|..+|..+ ..
T Consensus 190 -~~~~i~v~~~~l~~~~-~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 190 -NATFIRVVGSELVQKF-IGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred -CCCEEEeehHHHhHhh-ccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 6899999999999886 7999999999999999999999999999999733 1234445555555444 44
Q ss_pred CCCEEEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCC
Q 002045 798 HLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPT 875 (976)
Q Consensus 798 ~~~v~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~ 875 (976)
..+++||+|||++ +.||+ +.++++| .+|+|++|+.++|.+||+.++. +.....++++..|+..+.
T Consensus 268 ~~~v~VI~aTn~~-~~ld~--allRpgRfd~~I~v~~P~~~~R~~Il~~~~~----------~~~~~~~~~~~~la~~t~ 334 (389)
T PRK03992 268 RGNVKIIAATNRI-DILDP--AILRPGRFDRIIEVPLPDEEGRLEILKIHTR----------KMNLADDVDLEELAELTE 334 (389)
T ss_pred CCCEEEEEecCCh-hhCCH--HHcCCccCceEEEECCCCHHHHHHHHHHHhc----------cCCCCCcCCHHHHHHHcC
Confidence 6689999999999 88998 6666544 7899999999999999998887 344455688999999995
Q ss_pred CCCCCchhHHHHHH-HHHHHHHHh
Q 002045 876 VESGPKASELKAKV-EAEQHALRR 898 (976)
Q Consensus 876 ~~sg~s~aelk~~~-ea~~~alre 898 (976)
+ +++++|+++| +|.+.++++
T Consensus 335 g---~sgadl~~l~~eA~~~a~~~ 355 (389)
T PRK03992 335 G---ASGADLKAICTEAGMFAIRD 355 (389)
T ss_pred C---CCHHHHHHHHHHHHHHHHHc
Confidence 4 5559999999 888888876
No 65
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.8e-25 Score=258.63 Aligned_cols=216 Identities=19% Similarity=0.260 Sum_probs=176.3
Q ss_pred CCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcCCC
Q 002045 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFP 731 (976)
Q Consensus 652 ~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~~ 731 (976)
..+.+.++.|..+..+++.+.+. .++.+..|.++|.. .|+|+||+||||||||+||+|+|.+. +.|
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVd----fLk~p~ky~~lGak---------iPkGvlLvGpPGTGKTLLAkAvAgEA-~VP 210 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVD----FLKNPKKYQALGAK---------IPKGVLLVGPPGTGKTLLAKAVAGEA-GVP 210 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHH----HHhCchhhHhcccc---------cccceeEecCCCCCcHHHHHHHhccc-CCC
Confidence 45677777776555444444322 25667778887742 25899999999999999999999997 899
Q ss_pred eeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH-------HH---HHHHHHHHHHHhhCCCCCCE
Q 002045 732 VHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AH---EQLRAVLLTLLEELPSHLPI 801 (976)
Q Consensus 732 ~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~-------~~---~~~~~~l~~ll~~~~~~~~v 801 (976)
|++++.++++.. ++|-....+|.+|..|++.+|||+||||||++... .+ ++.+++|+..||+.....+|
T Consensus 211 Ff~iSGS~FVem-fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gv 289 (596)
T COG0465 211 FFSISGSDFVEM-FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGV 289 (596)
T ss_pred ceeccchhhhhh-hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCce
Confidence 999999999865 48988999999999999999999999999999732 22 34455555666665556799
Q ss_pred EEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCC
Q 002045 802 LLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESG 879 (976)
Q Consensus 802 ~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~sg 879 (976)
+||++||+| +.||+ |.+|++| ..+.|+.|+...|.+|++.|+. +.+...++++..+++.|++++|
T Consensus 290 iviaaTNRp-dVlD~--ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~----------~~~l~~~Vdl~~iAr~tpGfsG 356 (596)
T COG0465 290 IVIAATNRP-DVLDP--ALLRPGRFDRQILVELPDIKGREQILKVHAK----------NKPLAEDVDLKKIARGTPGFSG 356 (596)
T ss_pred EEEecCCCc-ccchH--hhcCCCCcceeeecCCcchhhHHHHHHHHhh----------cCCCCCcCCHHHHhhhCCCccc
Confidence 999999999 99999 8888887 7777999999999999999988 5777788999999999966666
Q ss_pred CchhHHHHHH-HHHHHHHHh
Q 002045 880 PKASELKAKV-EAEQHALRR 898 (976)
Q Consensus 880 ~s~aelk~~~-ea~~~alre 898 (976)
+++.+++ +++..+.+.
T Consensus 357 ---AdL~nl~NEAal~aar~ 373 (596)
T COG0465 357 ---ADLANLLNEAALLAARR 373 (596)
T ss_pred ---chHhhhHHHHHHHHHHh
Confidence 8999999 888888875
No 66
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.92 E-value=2.9e-25 Score=253.78 Aligned_cols=218 Identities=18% Similarity=0.219 Sum_probs=177.4
Q ss_pred cCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcCC
Q 002045 651 SRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKF 730 (976)
Q Consensus 651 ~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~ 730 (976)
.+..+|.+++|++..++++.+.+. .++..+..+..+|+.+ +.++||+||||||||++|++||+++ ..
T Consensus 177 ~p~~~~~DIgGl~~qi~~l~e~v~---lpl~~p~~~~~~gi~~---------p~gVLL~GPPGTGKT~LAraIA~el-~~ 243 (438)
T PTZ00361 177 APLESYADIGGLEQQIQEIKEAVE---LPLTHPELYDDIGIKP---------PKGVILYGPPGTGKTLLAKAVANET-SA 243 (438)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHH---hhhhCHHHHHhcCCCC---------CcEEEEECCCCCCHHHHHHHHHHhh-CC
Confidence 467889999999999888877743 2466677777776532 5789999999999999999999998 67
Q ss_pred CeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH-------HHHHHHHHHHHHHh---hCCCCCC
Q 002045 731 PVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLE---ELPSHLP 800 (976)
Q Consensus 731 ~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~-------~~~~~~~~l~~ll~---~~~~~~~ 800 (976)
+|+.+..++++.+| .|+++..++.+|..|+...||||||||||.++.. ....+.++++.+|. +.....+
T Consensus 244 ~fi~V~~seL~~k~-~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 244 TFLRVVGSELIQKY-LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred CEEEEecchhhhhh-cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 89999999998886 7999999999999999999999999999999742 12234444455554 4444668
Q ss_pred EEEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 002045 801 ILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVES 878 (976)
Q Consensus 801 v~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~s 878 (976)
+.||+|||++ +.||+ +.++++| ..|+|++|+.++|.+||+.++. ......++++..++..+.+++
T Consensus 323 V~VI~ATNr~-d~LDp--aLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~----------k~~l~~dvdl~~la~~t~g~s 389 (438)
T PTZ00361 323 VKVIMATNRI-ESLDP--ALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS----------KMTLAEDVDLEEFIMAKDELS 389 (438)
T ss_pred eEEEEecCCh-HHhhH--HhccCCeeEEEEEeCCCCHHHHHHHHHHHHh----------cCCCCcCcCHHHHHHhcCCCC
Confidence 9999999999 88998 7666655 7889999999999999999887 344456789999999995555
Q ss_pred CCchhHHHHHH-HHHHHHHHh
Q 002045 879 GPKASELKAKV-EAEQHALRR 898 (976)
Q Consensus 879 g~s~aelk~~~-ea~~~alre 898 (976)
+++|+++| +|.+.|+++
T Consensus 390 ---gAdI~~i~~eA~~~Alr~ 407 (438)
T PTZ00361 390 ---GADIKAICTEAGLLALRE 407 (438)
T ss_pred ---HHHHHHHHHHHHHHHHHh
Confidence 59999999 898988876
No 67
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.2e-25 Score=250.35 Aligned_cols=224 Identities=23% Similarity=0.274 Sum_probs=176.8
Q ss_pred ccccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhh
Q 002045 648 TVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHEL 727 (976)
Q Consensus 648 ~~~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l 727 (976)
....+.+.|.+++|++...+-+.+. ++.++..+..|..+. .| ..++||+||||||||+|++|||.++
T Consensus 144 ~~~~~~v~~~di~gl~~~k~~l~e~---vi~p~lr~d~F~glr-------~p---~rglLLfGPpgtGKtmL~~aiAsE~ 210 (428)
T KOG0740|consen 144 GDTLRNVGWDDIAGLEDAKQSLKEA---VILPLLRPDLFLGLR-------EP---VRGLLLFGPPGTGKTMLAKAIATES 210 (428)
T ss_pred hccCCcccccCCcchhhHHHHhhhh---hhhcccchHhhhccc-------cc---cchhheecCCCCchHHHHHHHHhhh
Confidence 3456678999999987666655554 233555566654432 23 4589999999999999999999998
Q ss_pred cCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH-------HHHHHHHHHHHHHhhC--CCC
Q 002045 728 EKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLEEL--PSH 798 (976)
Q Consensus 728 ~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~-------~~~~~~~~l~~ll~~~--~~~ 798 (976)
+..|+.|+.++|.++| +|++|+.++.+|..|+..+|+|+||||||+++.. ...++...++--+... ...
T Consensus 211 -~atff~iSassLtsK~-~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~ 288 (428)
T KOG0740|consen 211 -GATFFNISASSLTSKY-VGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPD 288 (428)
T ss_pred -cceEeeccHHHhhhhc-cChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCC
Confidence 8899999999999997 8999999999999999999999999999999854 2334444443333333 236
Q ss_pred CCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 002045 799 LPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVES 878 (976)
Q Consensus 799 ~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~s 878 (976)
.+|+||||||+| +.+|+ +.+|++..+++|++|+.+.|..+|+.+|.. ......+.++..|++.+++++
T Consensus 289 drvlvigaTN~P-~e~De--a~~Rrf~kr~yiplPd~etr~~~~~~ll~~---------~~~~l~~~d~~~l~~~Tegys 356 (428)
T KOG0740|consen 289 DRVLVIGATNRP-WELDE--AARRRFVKRLYIPLPDYETRSLLWKQLLKE---------QPNGLSDLDISLLAKVTEGYS 356 (428)
T ss_pred CeEEEEecCCCc-hHHHH--HHHHHhhceeeecCCCHHHHHHHHHHHHHh---------CCCCccHHHHHHHHHHhcCcc
Confidence 699999999999 89999 888877788889999999999999999984 233345578999999997766
Q ss_pred CCchhHHHHHH-HHHHHHHHhHhh
Q 002045 879 GPKASELKAKV-EAEQHALRRLRM 901 (976)
Q Consensus 879 g~s~aelk~~~-ea~~~alreLr~ 901 (976)
| .+|.++| ++.+-.++.+..
T Consensus 357 g---sdi~~l~kea~~~p~r~~~~ 377 (428)
T KOG0740|consen 357 G---SDITALCKEAAMGPLRELGG 377 (428)
T ss_pred c---ccHHHHHHHhhcCchhhccc
Confidence 6 8999999 777777766444
No 68
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.91 E-value=1.5e-24 Score=235.04 Aligned_cols=182 Identities=12% Similarity=0.076 Sum_probs=139.5
Q ss_pred ccCCceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhc-----CCceEeccccch
Q 002045 701 VYRPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRT-----TPSILYIPQFNL 775 (976)
Q Consensus 701 ~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~-----~p~ilfiDEid~ 775 (976)
++|.+++|+||||||||++|++||+++ +.+++.++.++|+++| +|++|++++++|..|+.. +||||||||||+
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el-g~~~i~vsa~eL~sk~-vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA 223 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM-GIEPIVMSAGELESEN-AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDA 223 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc-CCCeEEEEHHHhhcCc-CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhh
Confidence 446789999999999999999999998 8999999999999998 899999999999999864 699999999999
Q ss_pred hHHH-------HHHHH-HHHHHHHHhhC------------CCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCH
Q 002045 776 WWEN-------AHEQL-RAVLLTLLEEL------------PSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPST 835 (976)
Q Consensus 776 l~~~-------~~~~~-~~~l~~ll~~~------------~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~ 835 (976)
+++. +..++ ..+|+++|+++ +...+|+||+|||+| +.||+ +.+|+||.=-+|.+|+.
T Consensus 224 ~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrp-d~LDp--ALlRpGRfDk~i~lPd~ 300 (413)
T PLN00020 224 GAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDF-STLYA--PLIRDGRMEKFYWAPTR 300 (413)
T ss_pred cCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCc-ccCCH--hHcCCCCCCceeCCCCH
Confidence 9854 22344 47888888753 236689999999999 89999 88888773223568999
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCC-CCchhHHHHHH-HHHHHHHHh
Q 002045 836 EDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVES-GPKASELKAKV-EAEQHALRR 898 (976)
Q Consensus 836 ~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~s-g~s~aelk~~~-ea~~~alre 898 (976)
++|.+||+.|++. .. ....++..|+...++-+ .+.++-...++ ++...-+.+
T Consensus 301 e~R~eIL~~~~r~----------~~-l~~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~ 354 (413)
T PLN00020 301 EDRIGVVHGIFRD----------DG-VSREDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAE 354 (413)
T ss_pred HHHHHHHHHHhcc----------CC-CCHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999882 22 22466667776663321 12334444444 444444444
No 69
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.8e-25 Score=231.20 Aligned_cols=220 Identities=17% Similarity=0.225 Sum_probs=183.5
Q ss_pred CCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcCCC
Q 002045 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFP 731 (976)
Q Consensus 652 ~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~~ 731 (976)
..++++.++++..+..++.+. |.-|+..+..+.++|+.+ |.+++|+||||||||++|+++|..+ +.+
T Consensus 127 ~~~s~~~~ggl~~qirelre~---ielpl~np~lf~rvgIk~---------Pkg~ll~GppGtGKTlla~~Vaa~m-g~n 193 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREV---IELPLTNPELFLRVGIKP---------PKGLLLYGPPGTGKTLLARAVAATM-GVN 193 (388)
T ss_pred cccCHHHhCChHHHHHHHHhh---eEeeccCchhccccCCCC---------CceeEEeCCCCCchhHHHHHHHHhc-CCc
Confidence 345777888887777766665 333777787777776533 6799999999999999999999998 899
Q ss_pred eeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH-------HHHHHHHHHHHHHhhCCC---CCCE
Q 002045 732 VHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLEELPS---HLPI 801 (976)
Q Consensus 732 ~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~-------~~~~~~~~l~~ll~~~~~---~~~v 801 (976)
|+.+..+.|.++| +|++.+.|++.|..|+...|||||+||||++.+. ....+.++|+.++++|.. -.+|
T Consensus 194 fl~v~ss~lv~ky-iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rV 272 (388)
T KOG0651|consen 194 FLKVVSSALVDKY-IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRV 272 (388)
T ss_pred eEEeeHhhhhhhh-cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccc
Confidence 9999999999997 8999999999999999999999999999999853 456778899999998865 5689
Q ss_pred EEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCC
Q 002045 802 LLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESG 879 (976)
Q Consensus 802 ~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~sg 879 (976)
-+|+|||+| +.|++ +.+|+|| ..+++++|+...|..|++.|-.. ......++.+.+.+..+++.|
T Consensus 273 k~ImatNrp-dtLdp--aLlRpGRldrk~~iPlpne~~r~~I~Kih~~~----------i~~~Geid~eaivK~~d~f~g 339 (388)
T KOG0651|consen 273 KTIMATNRP-DTLDP--ALLRPGRLDRKVEIPLPNEQARLGILKIHVQP----------IDFHGEIDDEAILKLVDGFNG 339 (388)
T ss_pred cEEEecCCc-cccch--hhcCCccccceeccCCcchhhceeeEeecccc----------ccccccccHHHHHHHHhccCh
Confidence 999999999 99999 9999998 88889999999999999977652 223445778888888866655
Q ss_pred CchhHHHHHH-HHHHHHHHhHhh
Q 002045 880 PKASELKAKV-EAEQHALRRLRM 901 (976)
Q Consensus 880 ~s~aelk~~~-ea~~~alreLr~ 901 (976)
+++..+| ++-+.++++.+.
T Consensus 340 ---ad~rn~~tEag~Fa~~~~~~ 359 (388)
T KOG0651|consen 340 ---ADLRNVCTEAGMFAIPEERD 359 (388)
T ss_pred ---HHHhhhcccccccccchhhH
Confidence 8899888 888888776443
No 70
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.90 E-value=2.6e-24 Score=267.53 Aligned_cols=183 Identities=17% Similarity=0.207 Sum_probs=148.2
Q ss_pred ccCCceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCC-----------------------------------
Q 002045 701 VYRPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPS----------------------------------- 745 (976)
Q Consensus 701 ~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~----------------------------------- 745 (976)
.+|+|+||+||||||||+||+|+|.++ ++||+.+++++++.++.
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es-~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS-YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc-CCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence 457899999999999999999999997 89999999999986541
Q ss_pred -----CCChHHH--HHHHHHHHHhcCCceEeccccchhHHHHHHHH-HHHHHHHHhhCC---CCCCEEEEEecCCCcccC
Q 002045 746 -----AKTPEEA--LVHIFGEARRTTPSILYIPQFNLWWENAHEQL-RAVLLTLLEELP---SHLPILLLGSSSVPLAEV 814 (976)
Q Consensus 746 -----~g~~e~~--~~~~f~~a~~~~p~ilfiDEid~l~~~~~~~~-~~~l~~ll~~~~---~~~~v~vi~ttn~~~~~L 814 (976)
++..+.+ ++.+|+.|++.+||||||||||++.......+ +++|+.+|++.. ...+|+||||||+| +.|
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRP-D~L 1785 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIP-QKV 1785 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCc-ccC
Confidence 1223333 88899999999999999999999987644433 677888887653 35689999999999 999
Q ss_pred cCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCC-CCCCCCCCCCCCCCCCCCchhHHHHHH-H
Q 002045 815 EGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQ-ESVSLPELPKVPTVESGPKASELKAKV-E 890 (976)
Q Consensus 815 d~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~-~~~dl~~La~~~~~~sg~s~aelk~~~-e 890 (976)
|+ |.+|+|| ..|+|+.|+..+|.++|..++.. . +.... ..+++..||..|.|++| |+|.++| +
T Consensus 1786 DP--ALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~t------k--g~~L~~~~vdl~~LA~~T~GfSG---ADLanLvNE 1852 (2281)
T CHL00206 1786 DP--ALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYT------R--GFHLEKKMFHTNGFGSITMGSNA---RDLVALTNE 1852 (2281)
T ss_pred CH--hHcCCCCCCeEEEeCCCCchhHHHHHHHHHhh------c--CCCCCcccccHHHHHHhCCCCCH---HHHHHHHHH
Confidence 99 8888877 88899999999999999877641 1 11112 23578899999955555 9999999 9
Q ss_pred HHHHHHHh
Q 002045 891 AEQHALRR 898 (976)
Q Consensus 891 a~~~alre 898 (976)
|+..++++
T Consensus 1853 AaliAirq 1860 (2281)
T CHL00206 1853 ALSISITQ 1860 (2281)
T ss_pred HHHHHHHc
Confidence 99999887
No 71
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.90 E-value=6.2e-24 Score=251.55 Aligned_cols=217 Identities=19% Similarity=0.262 Sum_probs=170.8
Q ss_pred cCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcCC
Q 002045 651 SRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKF 730 (976)
Q Consensus 651 ~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~ 730 (976)
.+.++|.++.+++...+++.+.+.. +..+..+.++|. ..++|+||+||||||||++|++||+++ +.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~----l~~~~~~~~~g~---------~~~~giLL~GppGtGKT~la~alA~~~-~~ 114 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDF----LKNPSKFTKLGA---------KIPKGVLLVGPPGTGKTLLAKAVAGEA-GV 114 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHH----HHCHHHHHhcCC---------CCCCcEEEECCCCCCHHHHHHHHHHHc-CC
Confidence 5678899998887776666654322 334555555542 225789999999999999999999998 88
Q ss_pred CeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH----------HHHHHHHHHHHHHhhCCCCCC
Q 002045 731 PVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN----------AHEQLRAVLLTLLEELPSHLP 800 (976)
Q Consensus 731 ~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~----------~~~~~~~~l~~ll~~~~~~~~ 800 (976)
+|+.++.+++.+.+ .|.+++.++.+|..|+...||||||||||.++.. ....+++.|+..|+.+....+
T Consensus 115 ~~~~i~~~~~~~~~-~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 115 PFFSISGSDFVEMF-VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred CeeeccHHHHHHHH-hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 99999999888775 7889999999999999999999999999999743 123445566666666666778
Q ss_pred EEEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 002045 801 ILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVES 878 (976)
Q Consensus 801 v~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~s 878 (976)
|+||+|||++ +.||+ +.++++| ..++|++|+.++|.+||+.++. ..+...+.++..|+..+.++
T Consensus 194 v~vI~aTn~~-~~ld~--al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~----------~~~~~~~~~l~~la~~t~G~- 259 (495)
T TIGR01241 194 VIVIAATNRP-DVLDP--ALLRPGRFDRQVVVDLPDIKGREEILKVHAK----------NKKLAPDVDLKAVARRTPGF- 259 (495)
T ss_pred eEEEEecCCh-hhcCH--HHhcCCcceEEEEcCCCCHHHHHHHHHHHHh----------cCCCCcchhHHHHHHhCCCC-
Confidence 9999999999 88999 6766555 7899999999999999999987 23344567888999998554
Q ss_pred CCchhHHHHHH-HHHHHHHHh
Q 002045 879 GPKASELKAKV-EAEQHALRR 898 (976)
Q Consensus 879 g~s~aelk~~~-ea~~~alre 898 (976)
++++|.++| ++...+.++
T Consensus 260 --sgadl~~l~~eA~~~a~~~ 278 (495)
T TIGR01241 260 --SGADLANLLNEAALLAARK 278 (495)
T ss_pred --CHHHHHHHHHHHHHHHHHc
Confidence 558999998 666665543
No 72
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.90 E-value=8.4e-24 Score=244.62 Aligned_cols=182 Identities=16% Similarity=0.276 Sum_probs=150.9
Q ss_pred ccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcC
Q 002045 650 HSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEK 729 (976)
Q Consensus 650 ~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~ 729 (976)
..+.++|.+|+|+...++++...+. .++.+++.|..+|+.+ |+|+||+||||||||++|+++|+++..
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~---lp~~~~~l~~~~gl~~---------p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVE---LPFLHPELYREYDLKP---------PKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHH---HHhhCHHHHHhccCCC---------CcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 3567899999999988888877643 2566677787777532 579999999999999999999998731
Q ss_pred ---------CCeeecCCcccccCCCCCChHHHHHHHHHHHHhc----CCceEeccccchhHHH--------HHHHHHHHH
Q 002045 730 ---------FPVHSLGLPALLSDPSAKTPEEALVHIFGEARRT----TPSILYIPQFNLWWEN--------AHEQLRAVL 788 (976)
Q Consensus 730 ---------~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~----~p~ilfiDEid~l~~~--------~~~~~~~~l 788 (976)
..|+.+..++++++| .|+++..++.+|..|+.. .||||||||||.++.. ....++++|
T Consensus 243 ~i~~~~~~~~~fl~v~~~eLl~ky-vGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~L 321 (512)
T TIGR03689 243 RIGAETGDKSYFLNIKGPELLNKY-VGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQL 321 (512)
T ss_pred ccccccCCceeEEeccchhhcccc-cchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHH
Confidence 236677888888886 799999999999998864 6999999999999843 234567778
Q ss_pred HHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHH
Q 002045 789 LTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 789 ~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~ 847 (976)
+++|+++....+|+||+|||++ +.||+ +.+|++| ..|+|++|+.++|.+||+.++.
T Consensus 322 L~~LDgl~~~~~ViVI~ATN~~-d~LDp--ALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 322 LSELDGVESLDNVIVIGASNRE-DMIDP--AILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred HHHhcccccCCceEEEeccCCh-hhCCH--hhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 8888888777899999999999 89999 8888666 6889999999999999999987
No 73
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.90 E-value=2.7e-23 Score=237.02 Aligned_cols=219 Identities=21% Similarity=0.271 Sum_probs=174.3
Q ss_pred ccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcC
Q 002045 650 HSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEK 729 (976)
Q Consensus 650 ~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~ 729 (976)
..+.+.|.+++|++..++++.+.+. .++.++..+..+|+. +++|+||+||||||||++|+++|+.+ +
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~---~~~~~~~~~~~~g~~---------~p~gvLL~GppGtGKT~lakaia~~l-~ 181 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVE---LPLKHPELFEEVGIE---------PPKGVLLYGPPGTGKTLLAKAVAHET-N 181 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHH---HHhcCHHHHHhcCCC---------CCceEEEECCCCCCHHHHHHHHHHhC-C
Confidence 4677889999999999998887743 245666677766542 25789999999999999999999998 6
Q ss_pred CCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH-------HHHHHHHHHHHHHhh---CCCCC
Q 002045 730 FPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLEE---LPSHL 799 (976)
Q Consensus 730 ~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~-------~~~~~~~~l~~ll~~---~~~~~ 799 (976)
.+|+.+..+.+...| .|+....++.+|..|+...|+||||||+|.+... ....+...|..+|.. +....
T Consensus 182 ~~~~~v~~~~l~~~~-~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 260 (364)
T TIGR01242 182 ATFIRVVGSELVRKY-IGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRG 260 (364)
T ss_pred CCEEecchHHHHHHh-hhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 789999988888776 7888899999999999999999999999999632 122334445555544 44467
Q ss_pred CEEEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCC
Q 002045 800 PILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVE 877 (976)
Q Consensus 800 ~v~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~ 877 (976)
+++||+|||++ +.||+ +.++++| .+|+|++|+.++|.+||+.++. ......++++..|+..+.++
T Consensus 261 ~v~vI~ttn~~-~~ld~--al~r~grfd~~i~v~~P~~~~r~~Il~~~~~----------~~~l~~~~~~~~la~~t~g~ 327 (364)
T TIGR01242 261 NVKVIAATNRP-DILDP--ALLRPGRFDRIIEVPLPDFEGRLEILKIHTR----------KMKLAEDVDLEAIAKMTEGA 327 (364)
T ss_pred CEEEEEecCCh-hhCCh--hhcCcccCceEEEeCCcCHHHHHHHHHHHHh----------cCCCCccCCHHHHHHHcCCC
Confidence 89999999999 88988 6655443 7889999999999999998876 24445567899999999555
Q ss_pred CCCchhHHHHHH-HHHHHHHHh
Q 002045 878 SGPKASELKAKV-EAEQHALRR 898 (976)
Q Consensus 878 sg~s~aelk~~~-ea~~~alre 898 (976)
++++++++| +|.+.++++
T Consensus 328 ---sg~dl~~l~~~A~~~a~~~ 346 (364)
T TIGR01242 328 ---SGADLKAICTEAGMFAIRE 346 (364)
T ss_pred ---CHHHHHHHHHHHHHHHHHh
Confidence 559999999 888888876
No 74
>CHL00176 ftsH cell division protein; Validated
Probab=99.88 E-value=1e-22 Score=243.37 Aligned_cols=217 Identities=20% Similarity=0.243 Sum_probs=166.2
Q ss_pred cCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcCC
Q 002045 651 SRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKF 730 (976)
Q Consensus 651 ~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~ 730 (976)
...+.|.++.|+....+++.+.+.. +..+..+..+|. ..++++||+||||||||++|+++|.++ +.
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~----lk~~~~~~~~g~---------~~p~gVLL~GPpGTGKT~LAralA~e~-~~ 242 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSF----LKKPERFTAVGA---------KIPKGVLLVGPPGTGKTLLAKAIAGEA-EV 242 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHH----HhCHHHHhhccC---------CCCceEEEECCCCCCHHHHHHHHHHHh-CC
Confidence 3456788888886666655544322 334555555543 225789999999999999999999998 89
Q ss_pred CeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH----------HHHHHHHHHHHHHhhCCCCCC
Q 002045 731 PVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN----------AHEQLRAVLLTLLEELPSHLP 800 (976)
Q Consensus 731 ~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~----------~~~~~~~~l~~ll~~~~~~~~ 800 (976)
+|+.++++++...+ .|.....++.+|..|+...||||||||||.+... .....++.|+..|++.....+
T Consensus 243 p~i~is~s~f~~~~-~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 243 PFFSISGSEFVEMF-VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred CeeeccHHHHHHHh-hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 99999999887665 6777888999999999999999999999999732 123344445555555556778
Q ss_pred EEEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 002045 801 ILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVES 878 (976)
Q Consensus 801 v~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~s 878 (976)
|+||+|||++ +.||+ +.++++| .++.|++|+.++|.+||+.++.. .....+.++..|+..+.
T Consensus 322 ViVIaaTN~~-~~LD~--ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~----------~~~~~d~~l~~lA~~t~--- 385 (638)
T CHL00176 322 VIVIAATNRV-DILDA--ALLRPGRFDRQITVSLPDREGRLDILKVHARN----------KKLSPDVSLELIARRTP--- 385 (638)
T ss_pred eeEEEecCch-Hhhhh--hhhccccCceEEEECCCCHHHHHHHHHHHHhh----------cccchhHHHHHHHhcCC---
Confidence 9999999999 88998 7776654 78899999999999999999983 33455678889998884
Q ss_pred CCchhHHHHHH-HHHHHHHHh
Q 002045 879 GPKASELKAKV-EAEQHALRR 898 (976)
Q Consensus 879 g~s~aelk~~~-ea~~~alre 898 (976)
|+++++|.+++ ++...+.+.
T Consensus 386 G~sgaDL~~lvneAal~a~r~ 406 (638)
T CHL00176 386 GFSGADLANLLNEAAILTARR 406 (638)
T ss_pred CCCHHHHHHHHHHHHHHHHHh
Confidence 45559999998 676665543
No 75
>CHL00181 cbbX CbbX; Provisional
Probab=99.87 E-value=3.5e-21 Score=210.91 Aligned_cols=221 Identities=20% Similarity=0.270 Sum_probs=174.6
Q ss_pred ccccChHHHHHHHHHHHHcccCChhHHhhcCCCC---CceEEEEcCCCChHHHHHHHHHHHHhhcCC--cEEEEEecchh
Q 002045 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHITP---PRGVLLCGPPGTGKTLIARALACAASKAGQ--KVSFYMRKGAD 453 (976)
Q Consensus 379 ~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~---~~~vLL~GppGtGKT~laralA~~l~~~~~--~~~~~~~~~~~ 453 (976)
.+|+|++.+|++|.+++.+ +..+.++...|+.+ +.++||+||||||||++|+++|..+...+. ..+++.+++.+
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 3799999999999999887 55677788788754 346999999999999999999999865543 24588999999
Q ss_pred HHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCcc--
Q 002045 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVD-- 531 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~-- 531 (976)
+++.|+|++...+..+|..+.. +||||||+|.|+..+.. ......++..|+..|+. ...+++||++++...
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~~--~~~~~e~~~~L~~~me~--~~~~~~vI~ag~~~~~~ 174 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDNE--RDYGSEAIEILLQVMEN--QRDDLVVIFAGYKDRMD 174 (287)
T ss_pred HHHHHhccchHHHHHHHHHccC---CEEEEEccchhccCCCc--cchHHHHHHHHHHHHhc--CCCCEEEEEeCCcHHHH
Confidence 9999999888777888877643 59999999999754322 23457788899999984 346688888876532
Q ss_pred ---ccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH------ccCCC-HHHHHHHHHHHHH
Q 002045 532 ---AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAAS------CVGYC-GADLKALCTEAAI 601 (976)
Q Consensus 532 ---~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~------t~G~s-~~dI~~l~~~A~~ 601 (976)
.++|+|++ ||+.+|.|++|+.+++.+|+..++......++.+....+... ...|. ++.+++++..|..
T Consensus 175 ~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~ 252 (287)
T CHL00181 175 KFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARM 252 (287)
T ss_pred HHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 24689999 999999999999999999999999988877777655544443 23344 8999999999988
Q ss_pred HHHHhhCC
Q 002045 602 RAFREKYP 609 (976)
Q Consensus 602 ~a~~~~~~ 609 (976)
....|...
T Consensus 253 ~~~~r~~~ 260 (287)
T CHL00181 253 RQANRIFE 260 (287)
T ss_pred HHHHHHHc
Confidence 77776543
No 76
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.87 E-value=2.6e-21 Score=210.59 Aligned_cols=220 Identities=21% Similarity=0.259 Sum_probs=169.8
Q ss_pred cccccChHHHHHHHHHHHHcccCChhHHhhcCCC---CCceEEEEcCCCChHHHHHHHHHHHHhhcC--CcEEEEEecch
Q 002045 378 FDDIGGLSEYIDALKEMVFFPLLYPDFFASYHIT---PPRGVLLCGPPGTGKTLIARALACAASKAG--QKVSFYMRKGA 452 (976)
Q Consensus 378 ~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~---~~~~vLL~GppGtGKT~laralA~~l~~~~--~~~~~~~~~~~ 452 (976)
+++|+|++.+|+.|++++.++... ......|+. ...++||+||||||||++|+++|+.+...+ ....++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 567999999999999998885433 333445554 345899999999999999999999986544 23467889999
Q ss_pred hHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCcc-
Q 002045 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVD- 531 (976)
Q Consensus 453 ~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~- 531 (976)
++++.|+|+....+..+|..+. ++||||||+|.|.... ........+..|+..|+.. .+.++||++++..+
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~---~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~~~~ 155 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG---EKDFGKEAIDTLVKGMEDN--RNEFVLILAGYSDEM 155 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC---ccchHHHHHHHHHHHHhcc--CCCEEEEecCCcchh
Confidence 9999999999998899988774 4599999999996421 1223456788899988853 45666666654422
Q ss_pred ----ccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHc---------cCCCHHHHHHHHHH
Q 002045 532 ----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASC---------VGYCGADLKALCTE 598 (976)
Q Consensus 532 ----~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t---------~G~s~~dI~~l~~~ 598 (976)
.++|+|.+ ||...|.||.++.+++.+|++.++......++++.+..++... ..-+++.+.+++..
T Consensus 156 ~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~ 233 (261)
T TIGR02881 156 DYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEK 233 (261)
T ss_pred HHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence 36889998 9988999999999999999999999888888888777775432 12357889999998
Q ss_pred HHHHHHHhhC
Q 002045 599 AAIRAFREKY 608 (976)
Q Consensus 599 A~~~a~~~~~ 608 (976)
|..+...+..
T Consensus 234 a~~~~~~r~~ 243 (261)
T TIGR02881 234 AIRRQAVRLL 243 (261)
T ss_pred HHHHHHHHHh
Confidence 8877766644
No 77
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.87 E-value=5.2e-21 Score=209.80 Aligned_cols=219 Identities=19% Similarity=0.256 Sum_probs=177.2
Q ss_pred cccChHHHHHHHHHHHHcccCChhHHhhcCCCC---CceEEEEcCCCChHHHHHHHHHHHHhhcCC--cEEEEEecchhH
Q 002045 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITP---PRGVLLCGPPGTGKTLIARALACAASKAGQ--KVSFYMRKGADV 454 (976)
Q Consensus 380 ~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~---~~~vLL~GppGtGKT~laralA~~l~~~~~--~~~~~~~~~~~l 454 (976)
+|+|++++|++|.+++.+ +..+..+...|+.+ ..++||+||||||||++|+++|+.+...+. ..+|+.+++.++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 599999999999999988 66788888888764 458999999999999999999999876553 236889999999
Q ss_pred HhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCc--cc
Q 002045 455 LSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV--DA 532 (976)
Q Consensus 455 ~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~--~~ 532 (976)
+..++|++...+..+|+.+.. +||||||++.|.+.+.. ......++..|+..|+. ...+++||++++.. +.
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~--~~~~~~~~~~Ll~~le~--~~~~~~vI~a~~~~~~~~ 174 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMEN--QRDDLVVILAGYKDRMDS 174 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc--cchHHHHHHHHHHHHhc--CCCCEEEEEeCCcHHHHH
Confidence 999999888888888887644 59999999998643321 22356778889999984 34678888887653 22
Q ss_pred ---cchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHc------cC-CCHHHHHHHHHHHHHH
Q 002045 533 ---IDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASC------VG-YCGADLKALCTEAAIR 602 (976)
Q Consensus 533 ---ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t------~G-~s~~dI~~l~~~A~~~ 602 (976)
++|+|.+ ||...|.||+++.+++..|++.++......++.+.+..++.+. .. -+++++++++..+...
T Consensus 175 ~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 175 FFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred HHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH
Confidence 5899999 9999999999999999999999999988888888777776652 22 3589999999999877
Q ss_pred HHHhhC
Q 002045 603 AFREKY 608 (976)
Q Consensus 603 a~~~~~ 608 (976)
...+..
T Consensus 253 ~~~r~~ 258 (284)
T TIGR02880 253 QANRLF 258 (284)
T ss_pred HHHHHh
Confidence 776654
No 78
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.85 E-value=3.3e-21 Score=233.40 Aligned_cols=214 Identities=18% Similarity=0.238 Sum_probs=164.5
Q ss_pred CcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcCCCee
Q 002045 654 LSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFPVH 733 (976)
Q Consensus 654 ~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~ 733 (976)
..|.++.++...++++.+.+.- ...+..+..++. ..++|+||+||||||||++|++++.++ +.+|+
T Consensus 149 ~~~~di~g~~~~~~~l~~i~~~----~~~~~~~~~~~~---------~~~~gill~G~~G~GKt~~~~~~a~~~-~~~f~ 214 (644)
T PRK10733 149 TTFADVAGCDEAKEEVAELVEY----LREPSRFQKLGG---------KIPKGVLMVGPPGTGKTLLAKAIAGEA-KVPFF 214 (644)
T ss_pred CcHHHHcCHHHHHHHHHHHHHH----hhCHHHHHhcCC---------CCCCcEEEECCCCCCHHHHHHHHHHHc-CCCEE
Confidence 3456666665555544443211 222333433332 224789999999999999999999998 78999
Q ss_pred ecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH----------HHHHHHHHHHHHHhhCCCCCCEEE
Q 002045 734 SLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN----------AHEQLRAVLLTLLEELPSHLPILL 803 (976)
Q Consensus 734 ~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~----------~~~~~~~~l~~ll~~~~~~~~v~v 803 (976)
.++++++...+ .|.....++.+|..|+...||||||||||.+... ....+++.|+..|+++....+|+|
T Consensus 215 ~is~~~~~~~~-~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~viv 293 (644)
T PRK10733 215 TISGSDFVEMF-VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIV 293 (644)
T ss_pred EEehHHhHHhh-hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeE
Confidence 99998888765 7888999999999999999999999999999742 223455666666776666778999
Q ss_pred EEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 002045 804 LGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPK 881 (976)
Q Consensus 804 i~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~sg~s 881 (976)
|+|||+| +.||+ +.+|++| ..++|++|+.++|.+||+.++. +.+...++++..|+..+. |++
T Consensus 294 IaaTN~p-~~lD~--Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~----------~~~l~~~~d~~~la~~t~---G~s 357 (644)
T PRK10733 294 IAATNRP-DVLDP--ALLRPGRFDRQVVVGLPDVRGREQILKVHMR----------RVPLAPDIDAAIIARGTP---GFS 357 (644)
T ss_pred EEecCCh-hhcCH--HHhCCcccceEEEcCCCCHHHHHHHHHHHhh----------cCCCCCcCCHHHHHhhCC---CCC
Confidence 9999999 89999 7776554 7888999999999999999987 344455678888998884 555
Q ss_pred hhHHHHHH-HHHHHHHHh
Q 002045 882 ASELKAKV-EAEQHALRR 898 (976)
Q Consensus 882 ~aelk~~~-ea~~~alre 898 (976)
+++|.++| +|...+.+.
T Consensus 358 gadl~~l~~eAa~~a~r~ 375 (644)
T PRK10733 358 GADLANLVNEAALFAARG 375 (644)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 59999999 888877765
No 79
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.79 E-value=9e-19 Score=179.34 Aligned_cols=189 Identities=25% Similarity=0.348 Sum_probs=129.4
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
.+.+|++++|+++++..++-++.... ..-.+..++|||||||+||||||+.||++++ +.|...++..
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~--------~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~-----~~~~~~sg~~ 85 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAK--------KRGEALDHMLFYGPPGLGKTTLARIIANELG-----VNFKITSGPA 85 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHH--------CTTS---EEEEESSTTSSHHHHHHHHHHHCT-------EEEEECCC
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHH--------hcCCCcceEEEECCCccchhHHHHHHHhccC-----CCeEeccchh
Confidence 34689999999999999877665411 1113456899999999999999999999996 5666666643
Q ss_pred HHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC-----CC----------
Q 002045 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-----SR---------- 518 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~-----~~---------- 518 (976)
+- + .++. ..++... ....||||||||.| ...+...|+..|+... ..
T Consensus 86 i~-k-~~dl----~~il~~l--~~~~ILFIDEIHRl-----------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~ 146 (233)
T PF05496_consen 86 IE-K-AGDL----AAILTNL--KEGDILFIDEIHRL-----------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRIN 146 (233)
T ss_dssp ---S-CHHH----HHHHHT----TT-EEEECTCCC-------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE
T ss_pred hh-h-HHHH----HHHHHhc--CCCcEEEEechhhc-----------cHHHHHHHHHHhccCeEEEEeccccccceeecc
Confidence 21 1 1222 2233332 23569999999999 5667788899887532 11
Q ss_pred -CcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHH
Q 002045 519 -GQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCT 597 (976)
Q Consensus 519 -~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~ 597 (976)
.++.+|+||++...|.+.|+. ||..+..+..++.++..+|++.....+++.++.+...+||.++.| +++-..++++
T Consensus 147 l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~ 223 (233)
T PF05496_consen 147 LPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLR 223 (233)
T ss_dssp ----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHH
T ss_pred CCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHH
Confidence 258899999999999999999 999888999999999999999999999999999999999999998 4554444443
No 80
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=7.7e-19 Score=194.08 Aligned_cols=206 Identities=22% Similarity=0.260 Sum_probs=157.1
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
-+.+|+.|+--.+.|+.|.+=+...+...+.|.+.|....+|.|||||||||||+++.|+|+.|.-..+.+.+..+...
T Consensus 196 HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n- 274 (457)
T KOG0743|consen 196 HPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD- 274 (457)
T ss_pred CCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc-
Confidence 3478999999999999999988888999999999999999999999999999999999999999633333332222211
Q ss_pred HHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhh-------hhHHHHHHHHHHHhhccCCCC--cEEEE
Q 002045 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQE-------QIHNSIVSTLLALMDGLDSRG--QVVLI 524 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~-------~~~~~~~~~Ll~~ld~~~~~~--~vivI 524 (976)
++ ++.++-.+.. .+||+|.+||.-+..+..... ....-.++-||+.+|++-+.. ..|||
T Consensus 275 --------~d--Lr~LL~~t~~--kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIiv 342 (457)
T KOG0743|consen 275 --------SD--LRHLLLATPN--KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIV 342 (457)
T ss_pred --------HH--HHHHHHhCCC--CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEE
Confidence 11 5666555433 469999999976543322111 123357888999999987765 78999
Q ss_pred ecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccC--CCHHHHHHH
Q 002045 525 GATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVG--YCGADLKAL 595 (976)
Q Consensus 525 ~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G--~s~~dI~~l 595 (976)
.|||.++.|||||+||||.+..|+++..+.++...+++.++..-. +..++.+|.....+ .|++++...
T Consensus 343 FTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~---~h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 343 FTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE---DHRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred EecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC---CcchhHHHHHHhhcCccCHHHHHHH
Confidence 999999999999999999999999999999999999999887643 23344455554444 488887654
No 81
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.78 E-value=2.4e-19 Score=162.91 Aligned_cols=79 Identities=32% Similarity=0.424 Sum_probs=74.4
Q ss_pred HhHhhhhhhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 897 RRLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 897 reLr~~L~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
.+|+..|+.+++++. ++.+++|..||++..+|+|+.+|++||||+||++||+++.|.|+++|.+||+|||.||..||.+
T Consensus 2 ~~l~~~L~~~~~~~~-~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~ 80 (99)
T cd05508 2 DQLSKLLKFALERMK-QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNGG 80 (99)
T ss_pred hHHHHHHHHHHHHHh-CcCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 456777888888888 8999999999999999999999999999999999999999999999999999999999999985
No 82
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=8.6e-19 Score=183.79 Aligned_cols=188 Identities=29% Similarity=0.367 Sum_probs=150.8
Q ss_pred cccccChHHHHHHHHHHHHcccCChhHHhhcC-CCCCceEEEEcCCCChHHHHHHHHHHHHhh----cCCcEEEEEecch
Q 002045 378 FDDIGGLSEYIDALKEMVFFPLLYPDFFASYH-ITPPRGVLLCGPPGTGKTLIARALACAASK----AGQKVSFYMRKGA 452 (976)
Q Consensus 378 ~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~-~~~~~~vLL~GppGtGKT~laralA~~l~~----~~~~~~~~~~~~~ 452 (976)
|+.++=-.++|+.|..++...+.+.+.-..-. +..++-|||+||||||||+|++|+|+.+.. ..+...++.+++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 55566667788888887765443333222111 244678999999999999999999999853 2356778999999
Q ss_pred hHHhhhHhHHHHHHHHHHHHHHhc---CC--cEEEEccccccCCCCCC----hhhhhHHHHHHHHHHHhhccCCCCcEEE
Q 002045 453 DVLSKWVGEAERQLKLLFEEAQRN---QP--SIIFFDEIDGLAPVRSS----KQEQIHNSIVSTLLALMDGLDSRGQVVL 523 (976)
Q Consensus 453 ~l~~~~~g~~~~~l~~~f~~a~~~---~p--~VL~iDEid~L~~~r~~----~~~~~~~~~~~~Ll~~ld~~~~~~~viv 523 (976)
.++++|++++.+.+..+|+.+... .. ..++|||+++|+..|.. ......-+++++||..||.+....+|++
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvli 300 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLI 300 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEE
Confidence 999999999999999999887642 22 35679999999876622 2233467899999999999999999999
Q ss_pred EecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhc
Q 002045 524 IGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK 567 (976)
Q Consensus 524 I~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~ 567 (976)
++|+|-.+.||.|+.. |-+-+.++++|+...+.+|++..+..
T Consensus 301 L~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 301 LATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred EeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHH
Confidence 9999999999999998 99999999999999999999976654
No 83
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.77 E-value=3.1e-19 Score=166.24 Aligned_cols=81 Identities=52% Similarity=0.846 Sum_probs=78.7
Q ss_pred HHhHhhhhhhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcC
Q 002045 896 LRRLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTC 975 (976)
Q Consensus 896 lreLr~~L~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~ 975 (976)
+|+|+.+|+.+++++..++.+++|..||++..+|+|+++|++||||+||++||++++|.|+++|.+||.|||+||+.||+
T Consensus 1 ~~~lr~~L~~il~~l~~~~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~ 80 (112)
T cd05528 1 LRELRLFLRDVLKRLASDKRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNP 80 (112)
T ss_pred ChHHHHHHHHHHHHHHhCCCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 002045 976 A 976 (976)
Q Consensus 976 ~ 976 (976)
+
T Consensus 81 ~ 81 (112)
T cd05528 81 D 81 (112)
T ss_pred C
Confidence 5
No 84
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.77 E-value=5.8e-19 Score=163.33 Aligned_cols=80 Identities=29% Similarity=0.466 Sum_probs=75.9
Q ss_pred HhHhhhhhhhhccccccccccccccCCCCC--CccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhc
Q 002045 897 RRLRMCLRDVCNRMLYDKRFSAFHYPVTDE--DAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVST 974 (976)
Q Consensus 897 reLr~~L~~il~~l~~~~~~~~F~~PV~~~--~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn 974 (976)
.+++.+++.++..+..++.+++|..||++. ++|+|+++|++||||+||++||++++|.|+++|.+||.|||.||+.||
T Consensus 4 ~q~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN 83 (107)
T cd05497 4 NQLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYN 83 (107)
T ss_pred HHHHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 467788888999999999999999999986 799999999999999999999999999999999999999999999999
Q ss_pred CC
Q 002045 975 CA 976 (976)
Q Consensus 975 ~~ 976 (976)
+|
T Consensus 84 ~~ 85 (107)
T cd05497 84 KP 85 (107)
T ss_pred CC
Confidence 86
No 85
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.77 E-value=2e-18 Score=167.48 Aligned_cols=130 Identities=40% Similarity=0.735 Sum_probs=115.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhHhHHHHHHHHHHHHHHhcC-CcEEEEccccccCCCCC
Q 002045 416 VLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQ-PSIIFFDEIDGLAPVRS 494 (976)
Q Consensus 416 vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~~~-p~VL~iDEid~L~~~r~ 494 (976)
|||+||||||||++|+.+|+.++ .+++.+++..+.+.+.+.....+..+|..+.... |+||||||+|.+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~-----~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~ 75 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG-----FPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ 75 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT-----SEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS
T ss_pred CEEECcCCCCeeHHHHHHHhhcc-----cccccccccccccccccccccccccccccccccccceeeeeccchhcccccc
Confidence 79999999999999999999985 7899999999998899999999999999999887 99999999999998764
Q ss_pred ChhhhhHHHHHHHHHHHhhccCCC-CcEEEEecCCCccccchhhcCCCCCccccCCCC
Q 002045 495 SKQEQIHNSIVSTLLALMDGLDSR-GQVVLIGATNRVDAIDGALRRPGRFDREFNFPL 551 (976)
Q Consensus 495 ~~~~~~~~~~~~~Ll~~ld~~~~~-~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~ 551 (976)
.........++..|+..|+..... .+++||++||.++.+++++++ +||+..|++|.
T Consensus 76 ~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 76 PSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp TSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 444555678899999999977665 569999999999999999997 79999998874
No 86
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.76 E-value=1.1e-18 Score=158.42 Aligned_cols=78 Identities=29% Similarity=0.508 Sum_probs=74.0
Q ss_pred HhhhhhhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 899 LRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 899 Lr~~L~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
|+.++..++..+..++.+++|..||++..+|+|+++|++||||+||++||++++|.|+++|++||.|||.||++||+|
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 79 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKP 79 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 456677888999999999999999999999999999999999999999999999999999999999999999999986
No 87
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=8.5e-18 Score=180.55 Aligned_cols=211 Identities=27% Similarity=0.435 Sum_probs=153.1
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhH
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l 454 (976)
.-.|++|+-.......|..+...- .+ .+.+-.+-++||||||||||||++|+.||...+ ..+-.+.+.++
T Consensus 351 k~pl~~ViL~psLe~Rie~lA~aT-aN----TK~h~apfRNilfyGPPGTGKTm~ArelAr~SG-----lDYA~mTGGDV 420 (630)
T KOG0742|consen 351 KDPLEGVILHPSLEKRIEDLAIAT-AN----TKKHQAPFRNILFYGPPGTGKTMFARELARHSG-----LDYAIMTGGDV 420 (630)
T ss_pred CCCcCCeecCHHHHHHHHHHHHHh-cc----cccccchhhheeeeCCCCCCchHHHHHHHhhcC-----CceehhcCCCc
Confidence 344777877777777777654331 11 112234567999999999999999999999886 45555555554
Q ss_pred HhhhHhHHHHHHHHHHHHHHhcC-CcEEEEccccccCCCCCCh-hhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCccc
Q 002045 455 LSKWVGEAERQLKLLFEEAQRNQ-PSIIFFDEIDGLAPVRSSK-QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDA 532 (976)
Q Consensus 455 ~~~~~g~~~~~l~~~f~~a~~~~-p~VL~iDEid~L~~~r~~~-~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~~ 532 (976)
-. .-.+.-..+..+|+.+.... .-+|||||+|+++-.|... ........++.||-.-. .....++++.+||+|..
T Consensus 421 AP-lG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgd 497 (630)
T KOG0742|consen 421 AP-LGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGD 497 (630)
T ss_pred cc-cchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccc
Confidence 32 22345567889999988755 4589999999987666443 22334445555553322 44567899999999999
Q ss_pred cchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCC--------------------------CCHHHHHHHHHHccC
Q 002045 533 IDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQP--------------------------PSRELKSELAASCVG 586 (976)
Q Consensus 533 ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~--------------------------~~~~~l~~lA~~t~G 586 (976)
+|.++.. ||+.+|+||+|..++|..+|..|+.++... ..+..+.+.|..|.|
T Consensus 498 lDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeG 575 (630)
T KOG0742|consen 498 LDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEG 575 (630)
T ss_pred hhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccC
Confidence 9999998 999999999999999999999888764211 123456788999999
Q ss_pred CCHHHHHHHHHHHH
Q 002045 587 YCGADLKALCTEAA 600 (976)
Q Consensus 587 ~s~~dI~~l~~~A~ 600 (976)
|+|++|..|+....
T Consensus 576 fSGREiakLva~vQ 589 (630)
T KOG0742|consen 576 FSGREIAKLVASVQ 589 (630)
T ss_pred CcHHHHHHHHHHHH
Confidence 99999999976443
No 88
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.75 E-value=1.4e-18 Score=157.58 Aligned_cols=73 Identities=30% Similarity=0.553 Sum_probs=69.9
Q ss_pred hhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 904 RDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 904 ~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
..|++.+..++.+++|..||++..+|+|+++|++||||+||++||+++.|.|+++|.+||.|||+||+.||++
T Consensus 6 ~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 78 (97)
T cd05505 6 EEILSKILKYRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYEN 78 (97)
T ss_pred HHHHHHHHhCCCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 5678888889999999999999999999999999999999999999999999999999999999999999985
No 89
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.75 E-value=1.8e-18 Score=159.61 Aligned_cols=78 Identities=28% Similarity=0.462 Sum_probs=74.3
Q ss_pred HhhhhhhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 899 LRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 899 Lr~~L~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
++.++..++..+..++.+++|..||++..+|+|+++|++||||+||++||+++.|.|+++|.+||.|||+||..||++
T Consensus 4 ~~~~~~~il~~l~~~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 81 (104)
T cd05507 4 WKKAILLVYRTLASHRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNSS 81 (104)
T ss_pred HHHHHHHHHHHHHcCCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 566777888999999999999999999999999999999999999999999999999999999999999999999986
No 90
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.74 E-value=2.6e-18 Score=159.43 Aligned_cols=79 Identities=29% Similarity=0.488 Sum_probs=73.4
Q ss_pred hHhhhhhhhhcccccc-ccccccccCCCCC--CccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhc
Q 002045 898 RLRMCLRDVCNRMLYD-KRFSAFHYPVTDE--DAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVST 974 (976)
Q Consensus 898 eLr~~L~~il~~l~~~-~~~~~F~~PV~~~--~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn 974 (976)
+|+.++..++.++..+ +.+++|..||++. ++|+|+++|++||||+||++||++|+|.|+.+|.+||.|||+||+.||
T Consensus 3 ~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN 82 (108)
T cd05495 3 ELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLYN 82 (108)
T ss_pred HHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4566677788888888 9999999999987 799999999999999999999999999999999999999999999999
Q ss_pred CC
Q 002045 975 CA 976 (976)
Q Consensus 975 ~~ 976 (976)
++
T Consensus 83 ~~ 84 (108)
T cd05495 83 RK 84 (108)
T ss_pred CC
Confidence 85
No 91
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.74 E-value=2.5e-18 Score=156.52 Aligned_cols=78 Identities=27% Similarity=0.471 Sum_probs=73.7
Q ss_pred HhhhhhhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 899 LRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 899 Lr~~L~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
+...|+.++.++..++.+++|..||++..+|+|+++|++||||+||++||.+++|.|+++|.+||.|||.||+.||.+
T Consensus 2 ~~~~l~~il~~l~~~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 79 (98)
T cd05512 2 LEVLLRKTLDQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAK 79 (98)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 345677888999999999999999999999999999999999999999999999999999999999999999999985
No 92
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.74 E-value=2.3e-18 Score=161.62 Aligned_cols=79 Identities=32% Similarity=0.430 Sum_probs=73.3
Q ss_pred hHhhhhhhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 898 RLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 898 eLr~~L~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
+++.++..++..+..++.+++|..||++..+|+|+++|++||||+||++||.+++|.++.+|.+||+|||.||+.||++
T Consensus 5 ~w~~~c~~il~~l~~~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~~ 83 (119)
T cd05496 5 DWKKQCKELVNLMWDCEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYTPN 83 (119)
T ss_pred HHHHHHHHHHHHHHhCCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 3555567788888889999999999999999999999999999999999999999999999999999999999999963
No 93
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.74 E-value=3.1e-18 Score=159.38 Aligned_cols=78 Identities=28% Similarity=0.481 Sum_probs=72.0
Q ss_pred Hhhhhhhhhcccccc-ccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 899 LRMCLRDVCNRMLYD-KRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 899 Lr~~L~~il~~l~~~-~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
+..++..++..+..+ +.+++|..||++..+|+|+++|++||||+||++||.+++|.|+++|.+||.|||+||+.||.+
T Consensus 8 ~~~~~~~il~~l~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~yN~~ 86 (112)
T cd05510 8 FYESLDKVLNELKTYTEHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLYNSD 86 (112)
T ss_pred HHHHHHHHHHHHHhcCccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 445566777888777 789999999999999999999999999999999999999999999999999999999999974
No 94
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.71 E-value=1.4e-16 Score=165.60 Aligned_cols=191 Identities=24% Similarity=0.326 Sum_probs=145.4
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhH
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l 454 (976)
+-+|++.+|++.+|+.|.-++... +..-...-|+||+||||.||||||+.+|++++ +++...++..+
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AA--------k~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emg-----vn~k~tsGp~l 88 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAA--------KKRGEALDHVLLFGPPGLGKTTLAHIIANELG-----VNLKITSGPAL 88 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHH--------HhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhc-----CCeEecccccc
Confidence 467999999999999998887652 22225567999999999999999999999997 55655555543
Q ss_pred HhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCC----------------C
Q 002045 455 LSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS----------------R 518 (976)
Q Consensus 455 ~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~----------------~ 518 (976)
-. .|+ +-.++.... ..+||||||||.|.+ .+-..|...|+.+.- -
T Consensus 89 eK--~gD----laaiLt~Le--~~DVLFIDEIHrl~~-----------~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldL 149 (332)
T COG2255 89 EK--PGD----LAAILTNLE--EGDVLFIDEIHRLSP-----------AVEEVLYPAMEDFRLDIIIGKGPAARSIRLDL 149 (332)
T ss_pred cC--hhh----HHHHHhcCC--cCCeEEEehhhhcCh-----------hHHHHhhhhhhheeEEEEEccCCccceEeccC
Confidence 21 222 223333322 246999999999953 344556666764321 1
Q ss_pred CcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHH
Q 002045 519 GQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTE 598 (976)
Q Consensus 519 ~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~ 598 (976)
..+.+|+||.+..+|...|+. ||..+..+..++.++...|+......+.+.++++...++|.++.|- ++-...|++.
T Consensus 150 ppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGT-PRIAnRLLrR 226 (332)
T COG2255 150 PPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGT-PRIANRLLRR 226 (332)
T ss_pred CCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCC-cHHHHHHHHH
Confidence 368899999999999999999 9999999999999999999999999999999999999999999984 4444444444
Q ss_pred HH
Q 002045 599 AA 600 (976)
Q Consensus 599 A~ 600 (976)
..
T Consensus 227 VR 228 (332)
T COG2255 227 VR 228 (332)
T ss_pred HH
Confidence 33
No 95
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.70 E-value=2e-17 Score=150.95 Aligned_cols=74 Identities=30% Similarity=0.505 Sum_probs=70.6
Q ss_pred hhhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 903 LRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 903 L~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
+..++..+..++.+++|..||++..+|+|+.+|++||||+||++||+++.|.|+++|.+||.|||.||+.||.+
T Consensus 5 c~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 78 (97)
T cd05503 5 CETILDEMEAHEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNED 78 (97)
T ss_pred HHHHHHHHHcCCCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 36688888899999999999999999999999999999999999999999999999999999999999999985
No 96
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.70 E-value=2.8e-17 Score=148.89 Aligned_cols=76 Identities=22% Similarity=0.264 Sum_probs=67.6
Q ss_pred hHhhhhhhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 898 RLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 898 eLr~~L~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
+|+.| ..|+..+..++.+++|..+ +..+|||+++|++||||+||++||.+++|.|+++|.+||+|||+||++||++
T Consensus 3 ~l~~c-e~il~~l~~~~~s~~f~~~--p~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~ 78 (102)
T cd05501 3 ELLKC-EFLLLKVYCMSKSGFFISK--PYYIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKD 78 (102)
T ss_pred HHHHH-HHHHHHHHhCcccccccCC--CCCCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 34454 6688888888889998653 4689999999999999999999999999999999999999999999999985
No 97
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.69 E-value=2.5e-17 Score=153.86 Aligned_cols=77 Identities=30% Similarity=0.547 Sum_probs=73.2
Q ss_pred hhhhhhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 900 RMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 900 r~~L~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
...|+.+++.+..++.+++|..||++..+|+|+++|++||||+||++||.++.|.|+++|.+||+|||.||+.||++
T Consensus 2 ~~~l~~ii~~l~~~~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~ 78 (112)
T cd05511 2 SFILDEIVNELKNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGP 78 (112)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999985
No 98
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.69 E-value=3e-17 Score=154.03 Aligned_cols=74 Identities=28% Similarity=0.529 Sum_probs=70.1
Q ss_pred hhhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 903 LRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 903 L~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
+..|+..+..++.+++|..||++..+|+|+++|++||||+||++||.++.|.|+++|.+||.|||.||++||++
T Consensus 17 c~~il~~l~~~~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN~~ 90 (115)
T cd05504 17 LEQLLVEIVKHKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYNPE 90 (115)
T ss_pred HHHHHHHHHhCCCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 35678888888999999999999999999999999999999999999999999999999999999999999985
No 99
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.69 E-value=3.9e-16 Score=169.79 Aligned_cols=178 Identities=27% Similarity=0.384 Sum_probs=132.0
Q ss_pred CCCCcccccChHHHHHH---HHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEec
Q 002045 374 ESVSFDDIGGLSEYIDA---LKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~---l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~ 450 (976)
.+-++++++|++..+.. |.++|.. ....+++|||||||||||+|++||..++ ..|..++
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~-----~~f~~~s 80 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTN-----AAFEALS 80 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhC-----CceEEec
Confidence 35678899999887643 5555443 4456899999999999999999999986 5666666
Q ss_pred chhHHhhhHhHHHHHHHHHHHHHHhc----CCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEec
Q 002045 451 GADVLSKWVGEAERQLKLLFEEAQRN----QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGA 526 (976)
Q Consensus 451 ~~~l~~~~~g~~~~~l~~~f~~a~~~----~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~a 526 (976)
+.. .+.+.++.+++.++.. +..||||||||.+ ....+..||..|+ .+.+++|++
T Consensus 81 Av~-------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf-----------nK~QQD~lLp~vE----~G~iilIGA 138 (436)
T COG2256 81 AVT-------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRF-----------NKAQQDALLPHVE----NGTIILIGA 138 (436)
T ss_pred ccc-------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc-----------Chhhhhhhhhhhc----CCeEEEEec
Confidence 543 2345577788877542 3579999999998 3455667888877 578899987
Q ss_pred C--CCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhc--CCC-----CCCHHHHHHHHHHccCCCHHHHHHHHH
Q 002045 527 T--NRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK--WKQ-----PPSRELKSELAASCVGYCGADLKALCT 597 (976)
Q Consensus 527 t--n~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~--~~~-----~~~~~~l~~lA~~t~G~s~~dI~~l~~ 597 (976)
| |+...|+++|++ |. .++.|.+.+.++..++++..+.. .++ .++++.++.|+..+.| |.+.+++
T Consensus 139 TTENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~aLN 211 (436)
T COG2256 139 TTENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARRALN 211 (436)
T ss_pred cCCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHHHHH
Confidence 7 555679999999 66 78999999999999999884432 222 3668888888888887 5555444
Q ss_pred H
Q 002045 598 E 598 (976)
Q Consensus 598 ~ 598 (976)
.
T Consensus 212 ~ 212 (436)
T COG2256 212 L 212 (436)
T ss_pred H
Confidence 3
No 100
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.68 E-value=5.1e-17 Score=149.86 Aligned_cols=77 Identities=32% Similarity=0.573 Sum_probs=72.7
Q ss_pred hhhhhhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 900 RMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 900 r~~L~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
..++..++..+..++.+++|..||++..+|+|+++|++||||+||++||+++.|.|+++|..||.|||+||+.||++
T Consensus 3 ~~~~~~il~~l~~~~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 79 (101)
T cd05509 3 YTQLKKVLDSLKNHKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGP 79 (101)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 34567788888999999999999999999999999999999999999999999999999999999999999999985
No 101
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.68 E-value=1.3e-16 Score=154.69 Aligned_cols=121 Identities=23% Similarity=0.448 Sum_probs=102.0
Q ss_pred eeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcC-CceEeccccchhHHHH----
Q 002045 706 LLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTT-PSILYIPQFNLWWENA---- 780 (976)
Q Consensus 706 ~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~-p~ilfiDEid~l~~~~---- 780 (976)
+||+||||||||++|+++|+.+ +.+++.++++.+.+.+ .+++++.+..+|..|+... ||||||||+|.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l-~~~~~~i~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~ 78 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL-GFPFIEIDGSELISSY-AGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSS 78 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT-TSEEEEEETTHHHTSS-TTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSS
T ss_pred CEEECcCCCCeeHHHHHHHhhc-cccccccccccccccc-ccccccccccccccccccccceeeeeccchhccccccccc
Confidence 6899999999999999999998 7999999999999664 7999999999999999988 9999999999998764
Q ss_pred ---HHHHHHHHHHHHhhCCC-CCCEEEEEecCCCcccCcCCCC-CCcCCccEEEec
Q 002045 781 ---HEQLRAVLLTLLEELPS-HLPILLLGSSSVPLAEVEGDPS-TVFPLRSVYQVE 831 (976)
Q Consensus 781 ---~~~~~~~l~~ll~~~~~-~~~v~vi~ttn~~~~~Ld~~~~-~~~~~r~~i~v~ 831 (976)
...+.+.|+.+|+.... ..+++||+|||.+ +.+++.+. .+|. ..|+|+
T Consensus 79 ~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~-~~i~~~l~~~rf~--~~i~~~ 131 (132)
T PF00004_consen 79 SSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSP-DKIDPALLRSRFD--RRIEFP 131 (132)
T ss_dssp SHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSG-GGSCHHHHSTTSE--EEEEE-
T ss_pred ccccccccceeeecccccccccccceeEEeeCCh-hhCCHhHHhCCCc--EEEEcC
Confidence 56778888888888766 4779999999997 88888222 3333 666665
No 102
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.67 E-value=1.2e-15 Score=170.52 Aligned_cols=193 Identities=22% Similarity=0.294 Sum_probs=138.7
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHh
Q 002045 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS 456 (976)
Q Consensus 377 ~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~ 456 (976)
+|++++|++++++.|..++.... ..-..+.+++|+||||||||++|+++|+.++. .+..+.+.....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~--------~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~-----~~~~~~~~~~~~ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAK--------MRQEALDHLLLYGPPGLGKTTLAHIIANEMGV-----NLKITSGPALEK 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHH--------hcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-----CEEEeccchhcC
Confidence 68999999999999998875421 11134568999999999999999999999863 233333322111
Q ss_pred hhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC----------------CCCc
Q 002045 457 KWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD----------------SRGQ 520 (976)
Q Consensus 457 ~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~----------------~~~~ 520 (976)
.+. +...+... ..+.||||||+|.+.+ .....|+.+|+... ....
T Consensus 69 --~~~----l~~~l~~~--~~~~vl~iDEi~~l~~-----------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 129 (305)
T TIGR00635 69 --PGD----LAAILTNL--EEGDVLFIDEIHRLSP-----------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPP 129 (305)
T ss_pred --chh----HHHHHHhc--ccCCEEEEehHhhhCH-----------HHHHHhhHHHhhhheeeeeccCccccceeecCCC
Confidence 111 11222221 3467999999998852 12333555554221 1124
Q ss_pred EEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 002045 521 VVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAA 600 (976)
Q Consensus 521 vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~ 600 (976)
+++|++||.+..+++++++ ||...+.|++|+.+++.+|++..+......++++.+..++..+.|.. +.+..++..+.
T Consensus 130 ~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~ 206 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVR 206 (305)
T ss_pred eEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHH
Confidence 7889999999999999998 99888999999999999999999988888899999999999999865 66677777665
Q ss_pred HHHH
Q 002045 601 IRAF 604 (976)
Q Consensus 601 ~~a~ 604 (976)
..+.
T Consensus 207 ~~a~ 210 (305)
T TIGR00635 207 DFAQ 210 (305)
T ss_pred HHHH
Confidence 4443
No 103
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.67 E-value=1.5e-15 Score=171.17 Aligned_cols=196 Identities=23% Similarity=0.269 Sum_probs=141.9
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhH
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l 454 (976)
+.+|++++|++.+++.|..++.... ..-.++.++||+||||||||++|+++|++++. .+..+++..+
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~--------~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~-----~~~~~~~~~~ 87 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAK--------KRGEALDHVLLYGPPGLGKTTLANIIANEMGV-----NIRITSGPAL 87 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEECCCCccHHHHHHHHHHHhCC-----CeEEEecccc
Confidence 3589999999999999988875411 11245679999999999999999999999863 3333333321
Q ss_pred HhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC----------------CC
Q 002045 455 LSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD----------------SR 518 (976)
Q Consensus 455 ~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~----------------~~ 518 (976)
.. ...+..++... ..++||||||||.+.. .....|+..|+... .-
T Consensus 88 ~~------~~~l~~~l~~l--~~~~vl~IDEi~~l~~-----------~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l 148 (328)
T PRK00080 88 EK------PGDLAAILTNL--EEGDVLFIDEIHRLSP-----------VVEEILYPAMEDFRLDIMIGKGPAARSIRLDL 148 (328)
T ss_pred cC------hHHHHHHHHhc--ccCCEEEEecHhhcch-----------HHHHHHHHHHHhcceeeeeccCccccceeecC
Confidence 11 11222333322 3467999999998852 12222444444221 01
Q ss_pred CcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHH
Q 002045 519 GQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTE 598 (976)
Q Consensus 519 ~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~ 598 (976)
..+++|++||++..++++|++ ||...+.|+.|+.+++.+|++..+...+..++++.+..|+..+.|.. +.+..++..
T Consensus 149 ~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~ 225 (328)
T PRK00080 149 PPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRR 225 (328)
T ss_pred CCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHH
Confidence 347889999999999999988 99889999999999999999999999999999999999999999854 667777776
Q ss_pred HHHHHHH
Q 002045 599 AAIRAFR 605 (976)
Q Consensus 599 A~~~a~~ 605 (976)
+...+..
T Consensus 226 ~~~~a~~ 232 (328)
T PRK00080 226 VRDFAQV 232 (328)
T ss_pred HHHHHHH
Confidence 6555543
No 104
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.1e-15 Score=172.50 Aligned_cols=192 Identities=19% Similarity=0.178 Sum_probs=143.3
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC-----------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ----------- 442 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~----------- 442 (976)
.+.+|++|+|++.++..|..++... ..+..+||+||+|||||++|+++|+.+.....
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s 80 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS 80 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH
Confidence 4568999999999999998887641 23456899999999999999999999875321
Q ss_pred --------cEEEEEecchhHHhhhHhHHHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHH
Q 002045 443 --------KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (976)
Q Consensus 443 --------~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~----~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~ 510 (976)
...++.++++.-. ....++.+.+.+. .+...|+||||+|.|. ...++.||.
T Consensus 81 C~~i~~g~~~dviEIdaas~~------gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls-----------~~A~NALLK 143 (484)
T PRK14956 81 CLEITKGISSDVLEIDAASNR------GIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT-----------DQSFNALLK 143 (484)
T ss_pred HHHHHccCCccceeechhhcc------cHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC-----------HHHHHHHHH
Confidence 1123333332110 1123343333332 3345699999999983 456788899
Q ss_pred HhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 002045 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (976)
Q Consensus 511 ~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~ 590 (976)
.|+. ....+++|++|+.+..|.+++++ |+ ..+.|..++.++..++++..+...++.++++.+..||..+.| +.+
T Consensus 144 tLEE--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~R 217 (484)
T PRK14956 144 TLEE--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-SVR 217 (484)
T ss_pred Hhhc--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-hHH
Confidence 8884 45688899999999999999999 77 578999999999999999999988899999999999998887 456
Q ss_pred HHHHHHHHHH
Q 002045 591 DLKALCTEAA 600 (976)
Q Consensus 591 dI~~l~~~A~ 600 (976)
+.-+++..+.
T Consensus 218 dAL~lLeq~i 227 (484)
T PRK14956 218 DMLSFMEQAI 227 (484)
T ss_pred HHHHHHHHHH
Confidence 6666665544
No 105
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1e-14 Score=175.87 Aligned_cols=167 Identities=28% Similarity=0.328 Sum_probs=116.2
Q ss_pred cccccCh-HHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC-----CcEEEEEecc
Q 002045 378 FDDIGGL-SEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYMRKG 451 (976)
Q Consensus 378 ~~~i~G~-~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~~~~ 451 (976)
++-++|. ++.++.+.+++.. ...++-+|+|.||+|||.++.-+|+...... ....++.++.
T Consensus 185 ldPvigr~deeirRvi~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCccCCchHHHHHHHHHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 4446665 7777777776654 3347889999999999999999999875432 2344555555
Q ss_pred hhHH--hhhHhHHHHHHHHHHHHHH-hcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCC
Q 002045 452 ADVL--SKWVGEAERQLKLLFEEAQ-RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (976)
Q Consensus 452 ~~l~--~~~~g~~~~~l~~~f~~a~-~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn 528 (976)
..++ .++.|+.+.+++.+..++. .+...||||||+|-+++.....+ .....+.|... ..++.+.+|+||+
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~---~~d~~nlLkp~----L~rg~l~~IGatT 324 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG---AIDAANLLKPL----LARGGLWCIGATT 324 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch---HHHHHHhhHHH----HhcCCeEEEeccc
Confidence 4443 3678899999999999888 45677999999999987665522 22222222222 2345599999887
Q ss_pred Ccc-----ccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhc
Q 002045 529 RVD-----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK 567 (976)
Q Consensus 529 ~~~-----~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~ 567 (976)
.-. .-+|+|.+ ||. .+.++.|+.+....||..+...
T Consensus 325 ~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 325 LETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred HHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhh
Confidence 422 25799998 885 5678999988877788766555
No 106
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.65 E-value=2e-16 Score=146.16 Aligned_cols=77 Identities=27% Similarity=0.418 Sum_probs=71.2
Q ss_pred hhhhhhhhccccccccccccccCCCCC--CccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 900 RMCLRDVCNRMLYDKRFSAFHYPVTDE--DAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 900 r~~L~~il~~l~~~~~~~~F~~PV~~~--~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
+.++..++..+..++.+++|..||++. .+|+|+++|++||||+||++||.++.|.|+.+|..||.|||+||+.||++
T Consensus 6 ~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 84 (103)
T cd05500 6 HKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFNGP 84 (103)
T ss_pred HHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 344566888899999999999999986 79999999999999999999999999999999999999999999999975
No 107
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.65 E-value=1.3e-16 Score=147.88 Aligned_cols=64 Identities=20% Similarity=0.374 Sum_probs=61.1
Q ss_pred cccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 913 DKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 913 ~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
+..+++|..||+...+|+||.+|++||||+||++||.++.|.|+++|.+||.|||.||+.||++
T Consensus 22 ~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 85 (107)
T cd05516 22 RQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQTFNLE 85 (107)
T ss_pred CEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4448999999999999999999999999999999999999999999999999999999999986
No 108
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.64 E-value=2.7e-16 Score=144.55 Aligned_cols=75 Identities=28% Similarity=0.412 Sum_probs=70.0
Q ss_pred hhhhhhccccccccccccccCCCCC--CccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 902 CLRDVCNRMLYDKRFSAFHYPVTDE--DAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 902 ~L~~il~~l~~~~~~~~F~~PV~~~--~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
.+..++..+..++.+++|..||++. .+|+|+.+|++||||+||++||+++.|.|+++|..|+.|||.||+.||++
T Consensus 4 ~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~ 80 (99)
T cd05506 4 QCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPP 80 (99)
T ss_pred HHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 3466888888899999999999876 78999999999999999999999999999999999999999999999985
No 109
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=4.7e-15 Score=174.98 Aligned_cols=192 Identities=20% Similarity=0.182 Sum_probs=143.9
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (976)
...+|++|+|++.+++.|+.++.. -+.+..+||+||+|||||++++++|+.+.+..
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~s 78 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDG------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA 78 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHH
Confidence 356899999999999999988754 13345679999999999999999999986431
Q ss_pred -------CcEEEEEecchhHHhhhHhHHHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHH
Q 002045 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (976)
Q Consensus 442 -------~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~----~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~ 510 (976)
....++.++..+- . ....++.+++.+. .....||||||+|.|. ....+.||.
T Consensus 79 Cr~I~~G~h~DviEIDAas~--r----gVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT-----------~~A~NALLK 141 (830)
T PRK07003 79 CREIDEGRFVDYVEMDAASN--R----GVDEMAALLERAVYAPVDARFKVYMIDEVHMLT-----------NHAFNAMLK 141 (830)
T ss_pred HHHHhcCCCceEEEeccccc--c----cHHHHHHHHHHHHhccccCCceEEEEeChhhCC-----------HHHHHHHHH
Confidence 1123444443321 1 1123444444433 2335699999999983 345677888
Q ss_pred HhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 002045 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (976)
Q Consensus 511 ~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~ 590 (976)
.|+. ...+++||++||.+..|.+.+++ |+ ..|.|..++.++..++|+..+...++.++.+.+..|+..+.|- .+
T Consensus 142 tLEE--PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gs-mR 215 (830)
T PRK07003 142 TLEE--PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGS-MR 215 (830)
T ss_pred HHHh--cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HH
Confidence 8884 34578888899999999999999 77 7899999999999999999999888899999999999998874 46
Q ss_pred HHHHHHHHHH
Q 002045 591 DLKALCTEAA 600 (976)
Q Consensus 591 dI~~l~~~A~ 600 (976)
+..+++..+.
T Consensus 216 dALsLLdQAi 225 (830)
T PRK07003 216 DALSLTDQAI 225 (830)
T ss_pred HHHHHHHHHH
Confidence 6666655554
No 110
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.63 E-value=3.3e-16 Score=144.54 Aligned_cols=72 Identities=32% Similarity=0.505 Sum_probs=65.1
Q ss_pred hhhccccc---cccccccccCCCCC--CccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 905 DVCNRMLY---DKRFSAFHYPVTDE--DAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 905 ~il~~l~~---~~~~~~F~~PV~~~--~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
.|+..+.. +..+++|..||++. .+|+|+++|++||||+||++||+++.|.|+++|.+|++|||.||+.||++
T Consensus 7 ~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn~~ 83 (102)
T cd05499 7 EVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFNPE 83 (102)
T ss_pred HHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 34455544 45689999999998 99999999999999999999999999999999999999999999999985
No 111
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.1e-15 Score=164.60 Aligned_cols=142 Identities=16% Similarity=0.249 Sum_probs=112.7
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCC-ceEeccccchhHHH---
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTP-SILYIPQFNLWWEN--- 779 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p-~ilfiDEid~l~~~--- 779 (976)
++||||||||||||++|+-||... |+.+-.....++- .++.+.-.+|.++|+-|+...- -+|||||+|+++-.
T Consensus 385 RNilfyGPPGTGKTm~ArelAr~S-GlDYA~mTGGDVA--PlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk 461 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFARELARHS-GLDYAIMTGGDVA--PLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK 461 (630)
T ss_pred hheeeeCCCCCCchHHHHHHHhhc-CCceehhcCCCcc--ccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch
Confidence 579999999999999999999985 8877666655543 2345666788999999987554 48899999998733
Q ss_pred --HHHHHHHHHHHHHhhCCC-CCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHHHHHh
Q 002045 780 --AHEQLRAVLLTLLEELPS-HLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAAVS 851 (976)
Q Consensus 780 --~~~~~~~~l~~ll~~~~~-~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~~~~~ 851 (976)
.++....+|+.+|-.-.. ...++++.+||+| .+||..+.-++. .+++|++|..++|.+||..+|++.+.
T Consensus 462 tymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrp-gdlDsAV~DRid--e~veFpLPGeEERfkll~lYlnkyi~ 533 (630)
T KOG0742|consen 462 TYMSEAQRSALNALLFRTGDQSRDIVLVLATNRP-GDLDSAVNDRID--EVVEFPLPGEEERFKLLNLYLNKYIL 533 (630)
T ss_pred hhhcHHHHHHHHHHHHHhcccccceEEEeccCCc-cchhHHHHhhhh--heeecCCCChHHHHHHHHHHHHHHhc
Confidence 456667788888865533 4567777789999 889985555555 99999999999999999999998764
No 112
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=3.6e-15 Score=174.06 Aligned_cols=196 Identities=20% Similarity=0.189 Sum_probs=143.7
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (976)
...+|++|+|++.+++.|+.++..- +.+..+||+||+|||||++|+++|+.+.+..
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC 78 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC 78 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence 4568999999999999999987641 3345689999999999999999999997521
Q ss_pred ------------CcEEEEEecchhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHH
Q 002045 442 ------------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLL 509 (976)
Q Consensus 442 ------------~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll 509 (976)
....++.+++.+- ..+.+....+..+......+...|+||||+|.|. ....+.||
T Consensus 79 G~C~sC~~I~aG~hpDviEIdAas~--~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls-----------~~AaNALL 145 (700)
T PRK12323 79 GQCRACTEIDAGRFVDYIEMDAASN--RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT-----------NHAFNAML 145 (700)
T ss_pred cccHHHHHHHcCCCCcceEeccccc--CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC-----------HHHHHHHH
Confidence 0113334433311 1122222222222222223445799999999983 34567899
Q ss_pred HHhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCH
Q 002045 510 ALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCG 589 (976)
Q Consensus 510 ~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~ 589 (976)
..|+. ...+++||++||.+..|.+.+++ |+ ..|.|..++.++..+.|+..+...++..+.+.+..|+..+.| +.
T Consensus 146 KTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~G-s~ 219 (700)
T PRK12323 146 KTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQG-SM 219 (700)
T ss_pred Hhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 98884 44678888889999999999999 77 789999999999999999988888888888888888888776 55
Q ss_pred HHHHHHHHHHH
Q 002045 590 ADLKALCTEAA 600 (976)
Q Consensus 590 ~dI~~l~~~A~ 600 (976)
++..+++..+.
T Consensus 220 RdALsLLdQai 230 (700)
T PRK12323 220 RDALSLTDQAI 230 (700)
T ss_pred HHHHHHHHHHH
Confidence 66667666544
No 113
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=99.63 E-value=1.6e-16 Score=191.07 Aligned_cols=82 Identities=28% Similarity=0.519 Sum_probs=75.4
Q ss_pred HHHHhHhhhhhhhhccccccccccccccCCCCC--CccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHh
Q 002045 894 HALRRLRMCLRDVCNRMLYDKRFSAFHYPVTDE--DAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAK 971 (976)
Q Consensus 894 ~alreLr~~L~~il~~l~~~~~~~~F~~PV~~~--~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~ 971 (976)
+....|+.| ..||.+++.++++|+|..||++. .+|||+.||++||||+||++||+++.|.++.+|.+||+|||+||+
T Consensus 219 ~~~~~lk~C-~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm 297 (640)
T KOG1474|consen 219 LTVELLKQC-LSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCM 297 (640)
T ss_pred ccHHHHHHH-HHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHH
Confidence 444556777 45999999999999999999995 788999999999999999999999999999999999999999999
Q ss_pred hhcCC
Q 002045 972 VSTCA 976 (976)
Q Consensus 972 ~yn~~ 976 (976)
+||++
T Consensus 298 ~YNp~ 302 (640)
T KOG1474|consen 298 TYNPE 302 (640)
T ss_pred hcCCC
Confidence 99986
No 114
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=5.5e-16 Score=162.93 Aligned_cols=143 Identities=22% Similarity=0.256 Sum_probs=119.8
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc--------CCCeeecCCcccccCCCCCChHHHHHHHHHHHHhc---CCc--eEecc
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE--------KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRT---TPS--ILYIP 771 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~--------~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~---~p~--ilfiD 771 (976)
-+|++||||||||+|.||+|+.|. ...++.+++..|+++| .+++.+.+.++|+..... ..+ .|+||
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKW-FsESgKlV~kmF~kI~ELv~d~~~lVfvLID 257 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKW-FSESGKLVAKMFQKIQELVEDRGNLVFVLID 257 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHH-HhhhhhHHHHHHHHHHHHHhCCCcEEEEEeH
Confidence 489999999999999999999742 2357889999999999 489999999999887642 223 45599
Q ss_pred ccchhHHH-----------HHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHH
Q 002045 772 QFNLWWEN-----------AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSL 840 (976)
Q Consensus 772 Eid~l~~~-----------~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~ 840 (976)
|+++|... ..-+++++|++.|+.+....+|++++|+|-. +.||. |..=+...+++|.+|+...+++
T Consensus 258 EVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~-~siD~--AfVDRADi~~yVG~Pt~~ai~~ 334 (423)
T KOG0744|consen 258 EVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLT-DSIDV--AFVDRADIVFYVGPPTAEAIYE 334 (423)
T ss_pred HHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchH-HHHHH--HhhhHhhheeecCCccHHHHHH
Confidence 99999832 3457888999999999999999999999988 78887 7766666889999999999999
Q ss_pred HHHHHHHHHHh
Q 002045 841 FLGRLIEAAVS 851 (976)
Q Consensus 841 i~~~~l~~~~~ 851 (976)
|++.++....+
T Consensus 335 IlkscieEL~~ 345 (423)
T KOG0744|consen 335 ILKSCIEELIS 345 (423)
T ss_pred HHHHHHHHHHh
Confidence 99999986554
No 115
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.63 E-value=4.1e-16 Score=145.61 Aligned_cols=72 Identities=28% Similarity=0.474 Sum_probs=68.0
Q ss_pred hhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhC---CCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 904 RDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDS---GHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 904 ~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~---~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
..|+..+..++.+++|..||++ .+|+|+++|++||||+||++||+. +.|.++++|.+||.|||+||+.||.+
T Consensus 10 ~~il~~l~~~~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 84 (109)
T cd05502 10 ERLLLELYCHELSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCYKFNEE 84 (109)
T ss_pred HHHHHHHHhCCCChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 5677888888999999999999 899999999999999999999999 69999999999999999999999986
No 116
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.62 E-value=5.1e-16 Score=143.47 Aligned_cols=73 Identities=26% Similarity=0.444 Sum_probs=67.1
Q ss_pred hhhhcccccc---ccccccccCCCCC--CccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 904 RDVCNRMLYD---KRFSAFHYPVTDE--DAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 904 ~~il~~l~~~---~~~~~F~~PV~~~--~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
.+|++.+..+ +.+++|..||++. .+|+|+++|++||||+||++||+++.|.|+++|..||+|||+||+.||++
T Consensus 6 ~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn~~ 83 (102)
T cd05498 6 SGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYNPP 83 (102)
T ss_pred HHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4577777777 7789999999886 69999999999999999999999999999999999999999999999985
No 117
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.62 E-value=3.6e-15 Score=185.31 Aligned_cols=201 Identities=21% Similarity=0.228 Sum_probs=138.8
Q ss_pred cccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh------
Q 002045 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD------ 453 (976)
Q Consensus 380 ~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~------ 453 (976)
+++|++.+++.|.+++..+... +.....++||+||||||||++|+++|+.++. +|+.++...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~-----~~~~i~~~~~~~~~~ 388 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNR-----KFVRFSLGGVRDEAE 388 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcC-----CeEEEeCCCcccHHH
Confidence 4899999999999987653211 1123347999999999999999999999963 344443321
Q ss_pred HH---hhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhcc-------------CC
Q 002045 454 VL---SKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGL-------------DS 517 (976)
Q Consensus 454 l~---~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~-------------~~ 517 (976)
+. ..|+|.....+...|..+....| ||||||||.+.+...+. ..+.|+..|+.. ..
T Consensus 389 i~g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~-------~~~aLl~~ld~~~~~~f~d~~~~~~~d 460 (775)
T TIGR00763 389 IRGHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD-------PASALLEVLDPEQNNAFSDHYLDVPFD 460 (775)
T ss_pred HcCCCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC-------HHHHHHHhcCHHhcCccccccCCceec
Confidence 21 24666666667777777765556 89999999998532211 234456655421 01
Q ss_pred CCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHh-----cC-----CCCCCHHHHHHHHHH-ccC
Q 002045 518 RGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTR-----KW-----KQPPSRELKSELAAS-CVG 586 (976)
Q Consensus 518 ~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~-----~~-----~~~~~~~~l~~lA~~-t~G 586 (976)
..++++|+|||.++.|+++|++ || .+|.|+.|+.+++.+|++.++. .. .+.++++.+..|+.. +..
T Consensus 461 ~s~v~~I~TtN~~~~i~~~L~~--R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e 537 (775)
T TIGR00763 461 LSKVIFIATANSIDTIPRPLLD--RM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTRE 537 (775)
T ss_pred cCCEEEEEecCCchhCCHHHhC--Ce-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChh
Confidence 2478999999999999999999 99 4789999999999999987652 11 345677787777763 333
Q ss_pred CCHHHHHHHHHHHHHHH
Q 002045 587 YCGADLKALCTEAAIRA 603 (976)
Q Consensus 587 ~s~~dI~~l~~~A~~~a 603 (976)
+..+.|+..+...+..+
T Consensus 538 ~g~R~l~r~i~~~~~~~ 554 (775)
T TIGR00763 538 AGVRNLERQIEKICRKA 554 (775)
T ss_pred cCChHHHHHHHHHHHHH
Confidence 44555555554444333
No 118
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.62 E-value=8.4e-16 Score=142.17 Aligned_cols=65 Identities=17% Similarity=0.329 Sum_probs=62.3
Q ss_pred ccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 912 YDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 912 ~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
.++.+++|..||+..++|+|+++|++||||+||++||.++.|.|+++|.+||.|||.||++||++
T Consensus 20 ~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~yN~~ 84 (105)
T cd05515 20 GRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKYNEP 84 (105)
T ss_pred CCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 46678999999999999999999999999999999999999999999999999999999999985
No 119
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.62 E-value=5.2e-16 Score=143.35 Aligned_cols=65 Identities=25% Similarity=0.390 Sum_probs=62.1
Q ss_pred ccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 912 YDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 912 ~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
.+..+++|..|++...+|+|+++|++||||+||++||+.+.|.|+.+|.+|++|||.||+.||++
T Consensus 20 ~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn~~ 84 (103)
T cd05519 20 GRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTYNQE 84 (103)
T ss_pred CCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 45568899999999999999999999999999999999999999999999999999999999986
No 120
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.62 E-value=8.7e-16 Score=141.19 Aligned_cols=66 Identities=30% Similarity=0.407 Sum_probs=62.6
Q ss_pred cccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 911 LYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 911 ~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
..+..+++|..+++...+|+||++|++||||+||++||+.+.|.|+.+|..||.|||.||+.||++
T Consensus 19 ~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~ 84 (103)
T cd05517 19 SGRLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTFNEP 84 (103)
T ss_pred CCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 356668899999999999999999999999999999999999999999999999999999999986
No 121
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.61 E-value=2.6e-14 Score=167.76 Aligned_cols=211 Identities=16% Similarity=0.203 Sum_probs=147.1
Q ss_pred ccCCCCCccc-ccChHH--HHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEE
Q 002045 371 QVDESVSFDD-IGGLSE--YIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (976)
Q Consensus 371 ~~~~~~~~~~-i~G~~~--~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (976)
...+..+|++ ++|..+ +...++.+...| + ...++++||||||||||+|++++++++........++
T Consensus 114 ~l~~~~tfd~fv~g~~n~~a~~~~~~~~~~~----------~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~ 182 (450)
T PRK00149 114 PLNPKYTFDNFVVGKSNRLAHAAALAVAENP----------G-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVV 182 (450)
T ss_pred CCCCCCcccccccCCCcHHHHHHHHHHHhCc----------C-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEE
Confidence 3457889999 456443 444454444331 1 2335799999999999999999999997664446677
Q ss_pred EecchhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecC
Q 002045 448 MRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (976)
Q Consensus 448 ~~~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~at 527 (976)
.+++.+++..+..........-|.... ..+.+|+|||+|.+.+.. .....|+..++.+...+..+||++.
T Consensus 183 yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~~---------~~~~~l~~~~n~l~~~~~~iiits~ 252 (450)
T PRK00149 183 YVTSEKFTNDFVNALRNNTMEEFKEKY-RSVDVLLIDDIQFLAGKE---------RTQEEFFHTFNALHEAGKQIVLTSD 252 (450)
T ss_pred EEEHHHHHHHHHHHHHcCcHHHHHHHH-hcCCEEEEehhhhhcCCH---------HHHHHHHHHHHHHHHCCCcEEEECC
Confidence 788888877665544322112222221 246799999999886431 1233455555554445566777776
Q ss_pred CCccc---cchhhcCCCCCc--cccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Q 002045 528 NRVDA---IDGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIR 602 (976)
Q Consensus 528 n~~~~---ld~aL~r~gRf~--~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~ 602 (976)
..|.. +++.|.+ ||. .++.|.+|+.++|.+||+..+...+..+++++++.||..+.| +.+.|..++......
T Consensus 253 ~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~ 329 (450)
T PRK00149 253 RPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAY 329 (450)
T ss_pred CCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHH
Confidence 66655 6788888 885 578999999999999999999988889999999999998876 567777777766554
Q ss_pred HHH
Q 002045 603 AFR 605 (976)
Q Consensus 603 a~~ 605 (976)
+..
T Consensus 330 ~~~ 332 (450)
T PRK00149 330 ASL 332 (450)
T ss_pred HHh
Confidence 443
No 122
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.61 E-value=8.3e-15 Score=154.06 Aligned_cols=186 Identities=23% Similarity=0.217 Sum_probs=139.8
Q ss_pred CcccCCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhh-cCCcEEEE
Q 002045 369 PLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASK-AGQKVSFY 447 (976)
Q Consensus 369 ~~~~~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~-~~~~~~~~ 447 (976)
+++...+-+|++++|++.++..|+..+.. ....++|||||||||||+.|+++|+++.. ......+.
T Consensus 26 wteKYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl 92 (346)
T KOG0989|consen 26 WTEKYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVL 92 (346)
T ss_pred hHHHhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchh
Confidence 34445677999999999999999888753 23458999999999999999999999975 22333444
Q ss_pred EecchhHHhhhHhHHHHHHHHHHHHHHh------cCC----cEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCC
Q 002045 448 MRKGADVLSKWVGEAERQLKLLFEEAQR------NQP----SIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS 517 (976)
Q Consensus 448 ~~~~~~l~~~~~g~~~~~l~~~f~~a~~------~~p----~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~ 517 (976)
..+.++..+.-++.. .+. -|..... ..| -||+|||+|.| ....+.+|...|+..
T Consensus 93 ~lnaSderGisvvr~--Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm-----------tsdaq~aLrr~mE~~-- 156 (346)
T KOG0989|consen 93 ELNASDERGISVVRE--KIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSM-----------TSDAQAALRRTMEDF-- 156 (346)
T ss_pred hhcccccccccchhh--hhc-CHHHHhhccccccCCCCCcceEEEEechhhh-----------hHHHHHHHHHHHhcc--
Confidence 445554433322211 111 1222111 112 59999999998 467788999999963
Q ss_pred CCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccC
Q 002045 518 RGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVG 586 (976)
Q Consensus 518 ~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G 586 (976)
...+.+|..||.++.|...+.+ |+ ..+.|+....+.....|+..+...++.++.+.+..|+..+.|
T Consensus 157 s~~trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 157 SRTTRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred ccceEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 4467788889999999999988 77 568899999999999999999999999999999999998887
No 123
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.61 E-value=1e-15 Score=146.51 Aligned_cols=65 Identities=31% Similarity=0.416 Sum_probs=63.1
Q ss_pred ccccccccccCCCCC-CccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 912 YDKRFSAFHYPVTDE-DAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 912 ~~~~~~~F~~PV~~~-~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
.+..+++|..||++. .+|+|+++|++||||+||++||++++|.|+++|..||.|||.||++||++
T Consensus 41 ~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~~yN~~ 106 (128)
T cd05529 41 QLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAETFNEP 106 (128)
T ss_pred cCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 678899999999999 99999999999999999999999999999999999999999999999985
No 124
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=1.5e-14 Score=173.99 Aligned_cols=192 Identities=21% Similarity=0.221 Sum_probs=141.0
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC-----------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ----------- 442 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~----------- 442 (976)
.+.+|++|+|++.++..|+.++..- +.+..+||+||||||||++|+++|+.+.....
T Consensus 11 RP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~s 78 (944)
T PRK14949 11 RPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSS 78 (944)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchH
Confidence 3578999999999999999887541 33455799999999999999999999875311
Q ss_pred --------cEEEEEecchhHHhhhHhHHHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHH
Q 002045 443 --------KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (976)
Q Consensus 443 --------~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~----~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~ 510 (976)
...++.+++.+. .....++.+.+.+. .+...|+||||+|.| ....++.||.
T Consensus 79 C~~i~~g~~~DviEidAas~------~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-----------T~eAqNALLK 141 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAASR------TKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-----------SRSSFNALLK 141 (944)
T ss_pred HHHHhcCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-----------CHHHHHHHHH
Confidence 111222332210 01122333333332 234469999999998 3567788999
Q ss_pred HhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 002045 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (976)
Q Consensus 511 ~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~ 590 (976)
.|+. ..+.+++|++|+.+..|.+.+++ |+ ..+.|..++.++...+|+..+...++.++.+.+..|+..+.| +.+
T Consensus 142 tLEE--PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R 215 (944)
T PRK14949 142 TLEE--PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMR 215 (944)
T ss_pred HHhc--cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 9994 44567777778888889899988 76 779999999999999999988887888888888999988877 566
Q ss_pred HHHHHHHHHH
Q 002045 591 DLKALCTEAA 600 (976)
Q Consensus 591 dI~~l~~~A~ 600 (976)
++.++|..+.
T Consensus 216 ~ALnLLdQal 225 (944)
T PRK14949 216 DALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHH
Confidence 7777776554
No 125
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.61 E-value=1.2e-15 Score=140.32 Aligned_cols=65 Identities=23% Similarity=0.353 Sum_probs=62.0
Q ss_pred ccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 912 YDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 912 ~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
.+..+++|..|++...+|+|+++|++||||+||++||+++.|.|+.+|..||.|||.||+.||++
T Consensus 20 g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~ 84 (103)
T cd05520 20 GQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVP 84 (103)
T ss_pred CCCccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 45668899999999999999999999999999999999999999999999999999999999986
No 126
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.61 E-value=1.4e-15 Score=139.68 Aligned_cols=66 Identities=24% Similarity=0.387 Sum_probs=62.3
Q ss_pred cccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 911 LYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 911 ~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
..+..+..|..+|+...+|+|+++|++||||+||++||.++.|.|+++|.+||.|||.||+.||++
T Consensus 19 ~gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 84 (103)
T cd05518 19 SGRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYNEE 84 (103)
T ss_pred CCCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 355667899999999999999999999999999999999999999999999999999999999985
No 127
>PLN03025 replication factor C subunit; Provisional
Probab=99.60 E-value=2.8e-14 Score=160.03 Aligned_cols=178 Identities=20% Similarity=0.165 Sum_probs=132.4
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
.+.+|++|+|+++++..|+.++.. ....++||+||||||||++|+++|+++...++...++.+++++
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd 74 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD 74 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc
Confidence 567899999999999999887653 1224799999999999999999999986554444566777665
Q ss_pred HHhhhHhHHHHHHHHHHHHH-H------hcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEec
Q 002045 454 VLSKWVGEAERQLKLLFEEA-Q------RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGA 526 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a-~------~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~a 526 (976)
..+. . .++..+... . .....||||||+|.|. ...+..|+..|+... ..+.+|.+
T Consensus 75 ~~~~--~----~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt-----------~~aq~aL~~~lE~~~--~~t~~il~ 135 (319)
T PLN03025 75 DRGI--D----VVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT-----------SGAQQALRRTMEIYS--NTTRFALA 135 (319)
T ss_pred cccH--H----HHHHHHHHHHhccccCCCCCeEEEEEechhhcC-----------HHHHHHHHHHHhccc--CCceEEEE
Confidence 4321 1 222222211 1 1235699999999984 234566777777433 23456667
Q ss_pred CCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccC
Q 002045 527 TNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVG 586 (976)
Q Consensus 527 tn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G 586 (976)
||....+.++|++ |+ ..+.|+.|+.++...+++..+...++.++++.+..++..+.|
T Consensus 136 ~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g 192 (319)
T PLN03025 136 CNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG 192 (319)
T ss_pred eCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 7887888889988 66 679999999999999999999999999999999999988776
No 128
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.60 E-value=1.2e-15 Score=140.80 Aligned_cols=64 Identities=25% Similarity=0.318 Sum_probs=61.4
Q ss_pred cccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 913 DKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 913 ~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
+..+++|..+++...+|+||++|++||||+||++||.++.|.|+++|..|+.|||.||+.||++
T Consensus 23 ~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~~yn~~ 86 (106)
T cd05525 23 QSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEKYYGR 86 (106)
T ss_pred CcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4557999999999999999999999999999999999999999999999999999999999986
No 129
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2.2e-14 Score=167.99 Aligned_cols=192 Identities=18% Similarity=0.186 Sum_probs=143.7
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (976)
.+.+|++|+|++.+++.|..++.. -..+..+||+||+|||||++|+++|+.+....
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~~------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALER------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 356899999999999999998764 13456789999999999999999999986421
Q ss_pred -------CcEEEEEecchhHHhhhHhHHHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHH
Q 002045 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (976)
Q Consensus 442 -------~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~----~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~ 510 (976)
....++.+++++-. .-..++.+...+. .+...|+||||+|.|. ....+.|+.
T Consensus 78 C~~I~~g~hpDviEIDAAs~~------~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS-----------~~A~NALLK 140 (702)
T PRK14960 78 CKAVNEGRFIDLIEIDAASRT------KVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS-----------THSFNALLK 140 (702)
T ss_pred HHHHhcCCCCceEEecccccC------CHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC-----------HHHHHHHHH
Confidence 12234444443211 1123444444332 2345699999999883 345677888
Q ss_pred HhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 002045 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (976)
Q Consensus 511 ~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~ 590 (976)
.|+.. ...+.+|++|+.+..+.+.+++ |+ ..+.|..++.++..++++..+...++.++...+..|+..+.| +.+
T Consensus 141 tLEEP--P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dLR 214 (702)
T PRK14960 141 TLEEP--PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SLR 214 (702)
T ss_pred HHhcC--CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 88843 4566777777888888888887 77 689999999999999999999999999999999999988876 677
Q ss_pred HHHHHHHHHH
Q 002045 591 DLKALCTEAA 600 (976)
Q Consensus 591 dI~~l~~~A~ 600 (976)
++.+++..+.
T Consensus 215 dALnLLDQaI 224 (702)
T PRK14960 215 DALSLTDQAI 224 (702)
T ss_pred HHHHHHHHHH
Confidence 7777776554
No 130
>PRK06893 DNA replication initiation factor; Validated
Probab=99.59 E-value=3.3e-14 Score=151.58 Aligned_cols=199 Identities=12% Similarity=0.126 Sum_probs=131.5
Q ss_pred CcccCCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEE
Q 002045 369 PLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM 448 (976)
Q Consensus 369 ~~~~~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~ 448 (976)
+++..+..+|++++|.++.. .+..+... +.. .....++||||||||||+|++++|+++...+..+.|+.
T Consensus 6 ~~~~~~~~~fd~f~~~~~~~-~~~~~~~~-------~~~---~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~ 74 (229)
T PRK06893 6 PIHQIDDETLDNFYADNNLL-LLDSLRKN-------FID---LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP 74 (229)
T ss_pred CCCCCCcccccccccCChHH-HHHHHHHH-------hhc---cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee
Confidence 44556788999977655432 11111111 111 12245899999999999999999999987776676665
Q ss_pred ecchhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCc-EEEEecC
Q 002045 449 RKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQ-VVLIGAT 527 (976)
Q Consensus 449 ~~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~-vivI~at 527 (976)
.+..... ...++.... +..+|+|||++.+.+.. .....|+.+++.....++ ++|++++
T Consensus 75 ~~~~~~~----------~~~~~~~~~--~~dlLilDDi~~~~~~~---------~~~~~l~~l~n~~~~~~~~illits~ 133 (229)
T PRK06893 75 LSKSQYF----------SPAVLENLE--QQDLVCLDDLQAVIGNE---------EWELAIFDLFNRIKEQGKTLLLISAD 133 (229)
T ss_pred HHHhhhh----------hHHHHhhcc--cCCEEEEeChhhhcCCh---------HHHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 5422211 112222222 34699999999886431 112235555554444444 4455666
Q ss_pred CCccccc---hhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 002045 528 NRVDAID---GALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAA 600 (976)
Q Consensus 528 n~~~~ld---~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~ 600 (976)
..|..++ +.|.+..++..++.++.|+.+++.+|++..+...++.+++++++.|+.+..| +.+.+..++....
T Consensus 134 ~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~ 208 (229)
T PRK06893 134 CSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLD 208 (229)
T ss_pred CChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 6676654 7888844556788999999999999999999888899999999999999886 4555666555443
No 131
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2.5e-14 Score=166.66 Aligned_cols=190 Identities=18% Similarity=0.198 Sum_probs=137.7
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (976)
.+.+|++|+|++.+++.|..++... ..+..+||+||||||||++|+++|+.+....
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~ 76 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRA 76 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHH
Confidence 4568999999999999988876542 3456799999999999999999999986421
Q ss_pred -------CcEEEEEecchhHHhhhHhHHHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHH
Q 002045 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (976)
Q Consensus 442 -------~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~----~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~ 510 (976)
....++.++++.-. | -..++.+.+.+.. ....||||||+|.|. ...+..|+.
T Consensus 77 c~~i~~g~~~dv~el~aa~~~----g--id~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt-----------~~a~~~LLk 139 (472)
T PRK14962 77 CRSIDEGTFMDVIELDAASNR----G--IDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT-----------KEAFNALLK 139 (472)
T ss_pred HHHHhcCCCCccEEEeCcccC----C--HHHHHHHHHHHhhChhcCCeEEEEEEChHHhH-----------HHHHHHHHH
Confidence 11234444443211 1 1233444443332 234699999999883 345677888
Q ss_pred HhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 002045 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (976)
Q Consensus 511 ~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~ 590 (976)
.|+. ..+.+++|++|+.+..+++++.+ |+ ..+.|.+++.++...+++..+...+..++++.+..|+..+.| ..+
T Consensus 140 ~LE~--p~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G-dlR 213 (472)
T PRK14962 140 TLEE--PPSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG-GLR 213 (472)
T ss_pred HHHh--CCCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHH
Confidence 8884 34567777777778899999998 77 579999999999999999999888889999999999998776 334
Q ss_pred HHHHHHHH
Q 002045 591 DLKALCTE 598 (976)
Q Consensus 591 dI~~l~~~ 598 (976)
.+.+++..
T Consensus 214 ~aln~Le~ 221 (472)
T PRK14962 214 DALTMLEQ 221 (472)
T ss_pred HHHHHHHH
Confidence 44444443
No 132
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.59 E-value=3.5e-15 Score=162.52 Aligned_cols=139 Identities=11% Similarity=0.132 Sum_probs=98.8
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc------CCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE------KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWW 777 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~------~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~ 777 (976)
.++||+||||||||++|+++|+.+. ..+++.++++++++.| +|+++..++.+|..|. ++||||||||.|.
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~-~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~ 118 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEY-IGHTAQKTREVIKKAL---GGVLFIDEAYSLA 118 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhh-ccchHHHHHHHHHhcc---CCEEEEechhhhc
Confidence 5799999999999999999998752 2467788888888876 7999999999998774 5799999999987
Q ss_pred HHHH-HHHHHHHHHHHhhCCC-CCCEEEEEecCCC----cccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHHH
Q 002045 778 ENAH-EQLRAVLLTLLEELPS-HLPILLLGSSSVP----LAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (976)
Q Consensus 778 ~~~~-~~~~~~l~~ll~~~~~-~~~v~vi~ttn~~----~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~~ 848 (976)
.... .....++.+++..++. ...++||++++.. ...+++.+..+| ..++.|+.++.+++.+|++.++..
T Consensus 119 ~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf--~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 119 RGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRF--PISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred cCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhcc--ceEEEECCCCHHHHHHHHHHHHHH
Confidence 4211 1112334445555543 3455555554422 112445333444 367889999999999999988873
No 133
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.58 E-value=8.1e-14 Score=149.16 Aligned_cols=195 Identities=15% Similarity=0.172 Sum_probs=132.1
Q ss_pred CcccCCCCCccccc-C-hHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEE
Q 002045 369 PLQVDESVSFDDIG-G-LSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSF 446 (976)
Q Consensus 369 ~~~~~~~~~~~~i~-G-~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~ 446 (976)
++...+..+|++++ | ...+...+..+... ....+++||||+|||||+|++++|+.+...+..+.|
T Consensus 12 ~~~~~~~~~fd~f~~~~n~~a~~~l~~~~~~-------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y 78 (235)
T PRK08084 12 PLYLPDDETFASFYPGDNDSLLAALQNALRQ-------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGY 78 (235)
T ss_pred CCCCCCcCCccccccCccHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 34455778899854 4 45566666665433 223589999999999999999999998877766666
Q ss_pred EEecchhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCc-EEEEe
Q 002045 447 YMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQ-VVLIG 525 (976)
Q Consensus 447 ~~~~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~-vivI~ 525 (976)
+.++... . + ...+++.... ..+|||||++.+.+. ......|+..++.....++ .+|++
T Consensus 79 ~~~~~~~--~-~-------~~~~~~~~~~--~dlliiDdi~~~~~~---------~~~~~~lf~l~n~~~e~g~~~li~t 137 (235)
T PRK08084 79 VPLDKRA--W-F-------VPEVLEGMEQ--LSLVCIDNIECIAGD---------ELWEMAIFDLYNRILESGRTRLLIT 137 (235)
T ss_pred EEHHHHh--h-h-------hHHHHHHhhh--CCEEEEeChhhhcCC---------HHHHHHHHHHHHHHHHcCCCeEEEe
Confidence 6554321 1 1 1112222222 259999999988532 1122234444443333444 45555
Q ss_pred cCCCccc---cchhhcCCCCCc--cccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 002045 526 ATNRVDA---IDGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAA 600 (976)
Q Consensus 526 atn~~~~---ld~aL~r~gRf~--~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~ 600 (976)
+++.|.. +.+.|++ |+. .++.+.+|+.+++.+|++..+...++.+++++++.|+.+..| +.+.+..++....
T Consensus 138 s~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~ 214 (235)
T PRK08084 138 GDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLD 214 (235)
T ss_pred CCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHH
Confidence 6666655 5789998 774 788999999999999999888888899999999999999886 5566666666543
No 134
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=5e-14 Score=167.71 Aligned_cols=192 Identities=21% Similarity=0.223 Sum_probs=142.2
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC-----------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ----------- 442 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~----------- 442 (976)
.+.+|++|+|++.+++.|..++.. + ..+..+||+||+|||||++|+++|+.+.+...
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~-----------~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDL-----------G-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 356899999999999999888764 1 23455799999999999999999999876310
Q ss_pred --------cEEEEEecchhHHhhhHhHHHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHH
Q 002045 443 --------KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (976)
Q Consensus 443 --------~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~----~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~ 510 (976)
...++.++++.- ..+ ..++.+.+.+. .+...|+||||+|.|. ....+.||.
T Consensus 79 C~~i~~g~~~D~ieidaas~--~~V----ddiR~li~~~~~~p~~g~~KV~IIDEah~Ls-----------~~a~NALLK 141 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAASR--TKV----EDTRELLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFNALLK 141 (647)
T ss_pred HHHHHcCCCCCceeeccccc--CCH----HHHHHHHHHHHhhhhcCCCEEEEEechHhCC-----------HHHHHHHHH
Confidence 112333443321 012 22344443332 2345699999999883 456788999
Q ss_pred HhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 002045 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (976)
Q Consensus 511 ~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~ 590 (976)
.|+. ..+.+++|++|+.+..|.+.+++ |+ ..|.|..++.++...+|+..+...++.++...+..|+..+.| +.+
T Consensus 142 tLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R 215 (647)
T PRK07994 142 TLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-SMR 215 (647)
T ss_pred HHHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 9994 44577777788888899999999 75 889999999999999999999888888888888889888777 556
Q ss_pred HHHHHHHHHH
Q 002045 591 DLKALCTEAA 600 (976)
Q Consensus 591 dI~~l~~~A~ 600 (976)
++.+++..+.
T Consensus 216 ~Al~lldqai 225 (647)
T PRK07994 216 DALSLTDQAI 225 (647)
T ss_pred HHHHHHHHHH
Confidence 6666665544
No 135
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.58 E-value=5.9e-14 Score=162.77 Aligned_cols=209 Identities=16% Similarity=0.210 Sum_probs=143.7
Q ss_pred cCCCCCccc-ccChHHH--HHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEE
Q 002045 372 VDESVSFDD-IGGLSEY--IDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM 448 (976)
Q Consensus 372 ~~~~~~~~~-i~G~~~~--k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~ 448 (976)
.++..+|++ ++|..+. ...+.++...| + ....+++||||+|||||+|++++++++........++.
T Consensus 103 l~~~~tfd~fi~g~~n~~a~~~~~~~~~~~----------~-~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~y 171 (405)
T TIGR00362 103 LNPKYTFDNFVVGKSNRLAHAAALAVAENP----------G-KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVY 171 (405)
T ss_pred CCCCCcccccccCCcHHHHHHHHHHHHhCc----------C-ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEE
Confidence 446789999 6675553 33343333221 1 23457999999999999999999999876543456677
Q ss_pred ecchhHHhhhHhHHHH-HHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecC
Q 002045 449 RKGADVLSKWVGEAER-QLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (976)
Q Consensus 449 ~~~~~l~~~~~g~~~~-~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~at 527 (976)
+++.++...+...... .+..+..... .+.+|+|||++.+.+.. .....|+..++.+...+..+||++.
T Consensus 172 i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~---------~~~~~l~~~~n~~~~~~~~iiits~ 240 (405)
T TIGR00362 172 VSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKE---------RTQEEFFHTFNALHENGKQIVLTSD 240 (405)
T ss_pred EEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCH---------HHHHHHHHHHHHHHHCCCCEEEecC
Confidence 7888877665443321 1122222222 35699999999886431 1223455555544444556677666
Q ss_pred CCccc---cchhhcCCCCCc--cccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Q 002045 528 NRVDA---IDGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIR 602 (976)
Q Consensus 528 n~~~~---ld~aL~r~gRf~--~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~ 602 (976)
..|.. +++.|.+ ||. ..+.|++|+.++|..||+..+...+..+++++++.||....+ +.++|..++......
T Consensus 241 ~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~ 317 (405)
T TIGR00362 241 RPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAY 317 (405)
T ss_pred CCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 66654 5678887 775 478999999999999999999999999999999999988876 667788877776655
Q ss_pred HHH
Q 002045 603 AFR 605 (976)
Q Consensus 603 a~~ 605 (976)
+..
T Consensus 318 a~~ 320 (405)
T TIGR00362 318 ASL 320 (405)
T ss_pred HHH
Confidence 543
No 136
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.57 E-value=6.9e-15 Score=161.50 Aligned_cols=137 Identities=12% Similarity=0.144 Sum_probs=102.7
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcC------CCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEK------FPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWW 777 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~------~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~ 777 (976)
.++||+||||||||++|+++|+.+.. .+++.++++++++.| .|+++.++..+|..|. ++|||||||+.+.
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~-~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~ 134 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQY-IGHTAPKTKEILKRAM---GGVLFIDEAYYLY 134 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhh-cccchHHHHHHHHHcc---CcEEEEechhhhc
Confidence 47999999999999999999987632 268889988888876 6888888888888764 4899999999985
Q ss_pred HH-----HHHHHHHHHHHHHhhCCCCCCEEEEEecCCC-ccc---CcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHHH
Q 002045 778 EN-----AHEQLRAVLLTLLEELPSHLPILLLGSSSVP-LAE---VEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (976)
Q Consensus 778 ~~-----~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~-~~~---Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~~ 848 (976)
.. .+..+.+.|+.+|+. ....++||+|++.. ++. +++ +.+.++...|.|++++.+++..|++.++..
T Consensus 135 ~~~~~~~~~~~~~~~Ll~~le~--~~~~~~vI~a~~~~~~~~~~~~np--~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 135 RPDNERDYGQEAIEILLQVMEN--QRDDLVVILAGYKDRMDSFFESNP--GFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred cCCCccchHHHHHHHHHHHHhc--CCCCEEEEEeCCcHHHHHHHhhCH--HHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 22 344556666666653 23577778777643 122 244 333333378999999999999999999985
No 137
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.57 E-value=2.2e-14 Score=170.47 Aligned_cols=216 Identities=23% Similarity=0.226 Sum_probs=152.3
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC-----CcEEEEE
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYM 448 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~ 448 (976)
.+.+|++|+|++..++.|+..+.. ..+.++||+||||||||++|+++++.+.... ...+|+.
T Consensus 60 rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~ 126 (531)
T TIGR02902 60 RPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVE 126 (531)
T ss_pred CcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEE
Confidence 457899999999999988865432 3456899999999999999999998764321 1357888
Q ss_pred ecchhH-------HhhhHhHHHHH----------------HHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHH
Q 002045 449 RKGADV-------LSKWVGEAERQ----------------LKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIV 505 (976)
Q Consensus 449 ~~~~~l-------~~~~~g~~~~~----------------l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~ 505 (976)
++|... ....+|..... ....+. .....+||||||+.|. ...+
T Consensus 127 id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~---~a~gG~L~IdEI~~L~-----------~~~q 192 (531)
T TIGR02902 127 IDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT---RAHGGVLFIDEIGELH-----------PVQM 192 (531)
T ss_pred EccccccCCccccchhhcCCcccchhccccccccCCcccccCchhh---ccCCcEEEEechhhCC-----------HHHH
Confidence 887531 11111110000 000111 2234599999999984 4456
Q ss_pred HHHHHHhhccC---------------------------CCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHH
Q 002045 506 STLLALMDGLD---------------------------SRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARA 558 (976)
Q Consensus 506 ~~Ll~~ld~~~---------------------------~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~ 558 (976)
..|+..|+... ..+-.+|++||+.|+.+++++++ |+ ..|.|++++.+++.
T Consensus 193 ~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~ 269 (531)
T TIGR02902 193 NKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIK 269 (531)
T ss_pred HHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHHH
Confidence 66776664310 01123455666779999999998 87 57889999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCccccCcccccccccceeEeehhhhhccc
Q 002045 559 EILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMS 637 (976)
Q Consensus 559 ~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~ 637 (976)
.|++..++..++.++++.++.|+.++. +++++.++++.|+..+..+. ...|+.+|+..++.
T Consensus 270 ~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~~----------------~~~It~~dI~~vl~ 330 (531)
T TIGR02902 270 EIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGEG----------------RKRILAEDIEWVAE 330 (531)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhCC----------------CcEEcHHHHHHHhC
Confidence 999999999988999999888887664 78999999999987665532 12477788887765
No 138
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=4.4e-14 Score=163.70 Aligned_cols=193 Identities=22% Similarity=0.268 Sum_probs=147.0
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-------------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA------------- 440 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~------------- 440 (976)
.+.+|++|+|++.+++.|+.++.. + +.+.++||+||+|||||++|+++|+.+...
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~-----------~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~ 75 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTL-----------N-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHN 75 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHH
Confidence 357899999999999999887654 1 446789999999999999999999987532
Q ss_pred ------CCcEEEEEecchhHHhhhHhHHHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHH
Q 002045 441 ------GQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (976)
Q Consensus 441 ------~~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~----~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~ 510 (976)
+....++.+++++-. .-..++.+.+.+.. ....|+||||+|.|. ...++.|+.
T Consensus 76 C~~i~~~~~~Dv~eidaas~~------~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls-----------~~A~NaLLK 138 (491)
T PRK14964 76 CISIKNSNHPDVIEIDAASNT------SVDDIKVILENSCYLPISSKFKVYIIDEVHMLS-----------NSAFNALLK 138 (491)
T ss_pred HHHHhccCCCCEEEEecccCC------CHHHHHHHHHHHHhccccCCceEEEEeChHhCC-----------HHHHHHHHH
Confidence 123345556554321 12234555555432 234599999999883 346678899
Q ss_pred HhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 002045 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (976)
Q Consensus 511 ~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~ 590 (976)
.|+. ....+++|.+|+.+..+.+.+++ |+ ..+.|..++.++...++...+...+..++.+.+..|+..+.| +.+
T Consensus 139 ~LEe--Pp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR 212 (491)
T PRK14964 139 TLEE--PAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SMR 212 (491)
T ss_pred HHhC--CCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 9985 34567777778888889999988 66 679999999999999999999999999999999999988876 677
Q ss_pred HHHHHHHHHHH
Q 002045 591 DLKALCTEAAI 601 (976)
Q Consensus 591 dI~~l~~~A~~ 601 (976)
++.+++..++.
T Consensus 213 ~alslLdqli~ 223 (491)
T PRK14964 213 NALFLLEQAAI 223 (491)
T ss_pred HHHHHHHHHHH
Confidence 77777776653
No 139
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=6.2e-14 Score=165.86 Aligned_cols=193 Identities=21% Similarity=0.198 Sum_probs=144.2
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC-----------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ----------- 442 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~----------- 442 (976)
.+.+|++|+|++.+++.|+.++... +.+..+||+||+|||||++|+++|+.+.....
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 4578999999999999999987641 44567999999999999999999999864321
Q ss_pred --------cEEEEEecchhHHhhhHhHHHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHH
Q 002045 443 --------KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (976)
Q Consensus 443 --------~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~----~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~ 510 (976)
...++.++++.- .....++.++..+. .....||||||+|.|. ...++.||.
T Consensus 79 Cr~i~~g~~~DvlEidaAs~------~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls-----------~~A~NALLK 141 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAASN------TGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS-----------KSAFNAMLK 141 (709)
T ss_pred HHHHhccCccceEEEecccc------CCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC-----------HHHHHHHHH
Confidence 112233332211 11234555555432 2334699999999873 345677888
Q ss_pred HhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 002045 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (976)
Q Consensus 511 ~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~ 590 (976)
.|+.. .+.+++|++|+.+..+.+.+++ |+ ..|.|..++.++...+|+..+...++.++...+..|+..+.| +.+
T Consensus 142 tLEEP--p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slR 215 (709)
T PRK08691 142 TLEEP--PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMR 215 (709)
T ss_pred HHHhC--CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHH
Confidence 88843 3567777788888888888887 77 678899999999999999999999999999999999988865 677
Q ss_pred HHHHHHHHHHH
Q 002045 591 DLKALCTEAAI 601 (976)
Q Consensus 591 dI~~l~~~A~~ 601 (976)
++.+++..++.
T Consensus 216 dAlnLLDqaia 226 (709)
T PRK08691 216 DALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHH
Confidence 88888776654
No 140
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=6.5e-14 Score=159.61 Aligned_cols=192 Identities=20% Similarity=0.195 Sum_probs=138.8
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (976)
.+.+|++|+|++.+++.|+.++... ..+..+||+||||||||++|+++|+.+....
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~ 78 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCII 78 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 3568999999999999998887541 3345689999999999999999999986321
Q ss_pred -------CcEEEEEecchhHHhhhHhHHHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHH
Q 002045 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (976)
Q Consensus 442 -------~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~----~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~ 510 (976)
....++.++++.. .....++.+.+.+.. ....|+||||+|.|. ...++.|+.
T Consensus 79 c~~~~~~~~~d~~~~~~~~~------~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~-----------~~a~naLLk 141 (363)
T PRK14961 79 CKEIEKGLCLDLIEIDAASR------TKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS-----------RHSFNALLK 141 (363)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC-----------HHHHHHHHH
Confidence 0112333333210 111234444444332 224599999999883 345567888
Q ss_pred HhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 002045 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (976)
Q Consensus 511 ~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~ 590 (976)
.++. ....+.+|.+|+.++.+.+++++ |+ ..+.|++++.++..+++...+...+..++.+.+..++..+.| +.+
T Consensus 142 ~lEe--~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R 215 (363)
T PRK14961 142 TLEE--PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMR 215 (363)
T ss_pred HHhc--CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8884 34456677777778889899988 77 679999999999999999999888888888888889988876 566
Q ss_pred HHHHHHHHHH
Q 002045 591 DLKALCTEAA 600 (976)
Q Consensus 591 dI~~l~~~A~ 600 (976)
++.+++..++
T Consensus 216 ~al~~l~~~~ 225 (363)
T PRK14961 216 DALNLLEHAI 225 (363)
T ss_pred HHHHHHHHHH
Confidence 6777766654
No 141
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=5.5e-14 Score=165.43 Aligned_cols=192 Identities=18% Similarity=0.162 Sum_probs=143.8
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (976)
.+.+|++|+|++.+++.|+.++..- ..+..+||+||+|||||++|+++|+.+....
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 78 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCEN 78 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHH
Confidence 4568999999999999999988541 3345689999999999999999999996531
Q ss_pred -------CcEEEEEecchhHHhhhHhHHHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHH
Q 002045 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (976)
Q Consensus 442 -------~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~----~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~ 510 (976)
....++.++++.- ..+ ..++.+.+.+. .+...|+||||+|.|. ....+.|+.
T Consensus 79 C~~i~~g~~~d~~eidaas~--~~v----~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls-----------~~a~naLLk 141 (509)
T PRK14958 79 CREIDEGRFPDLFEVDAASR--TKV----EDTRELLDNIPYAPTKGRFKVYLIDEVHMLS-----------GHSFNALLK 141 (509)
T ss_pred HHHHhcCCCceEEEEccccc--CCH----HHHHHHHHHHhhccccCCcEEEEEEChHhcC-----------HHHHHHHHH
Confidence 1223455554321 112 22444444433 2334699999999984 345678889
Q ss_pred HhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 002045 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (976)
Q Consensus 511 ~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~ 590 (976)
.|+.. ...+++|.+|+.+..+.+.+++ |+ ..++|..++.++....++..+...++.++.+.+..|+..+.| +.+
T Consensus 142 ~LEep--p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-slR 215 (509)
T PRK14958 142 TLEEP--PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SVR 215 (509)
T ss_pred HHhcc--CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 88853 3467777777888888888988 66 678999999999999999999988888999888889888765 677
Q ss_pred HHHHHHHHHH
Q 002045 591 DLKALCTEAA 600 (976)
Q Consensus 591 dI~~l~~~A~ 600 (976)
++.+++..++
T Consensus 216 ~al~lLdq~i 225 (509)
T PRK14958 216 DALSLLDQSI 225 (509)
T ss_pred HHHHHHHHHH
Confidence 8888887664
No 142
>CHL00181 cbbX CbbX; Provisional
Probab=99.56 E-value=9.3e-15 Score=160.34 Aligned_cols=137 Identities=12% Similarity=0.131 Sum_probs=102.5
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcC------CCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEK------FPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWW 777 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~------~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~ 777 (976)
.++||+||||||||++|+++|+.+.. .+++.++...+++.| +|+++..+..+|..|. ++||||||++.+.
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~-~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~ 135 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQY-IGHTAPKTKEVLKKAM---GGVLFIDEAYYLY 135 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHH-hccchHHHHHHHHHcc---CCEEEEEccchhc
Confidence 45999999999999999999997522 358888888888876 7888888888888764 5799999999985
Q ss_pred HH-----HHHHHHHHHHHHHhhCCCCCCEEEEEecCCC-cc---cCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHHH
Q 002045 778 EN-----AHEQLRAVLLTLLEELPSHLPILLLGSSSVP-LA---EVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (976)
Q Consensus 778 ~~-----~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~-~~---~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~~ 848 (976)
.. .+..+...|+.+|+.- ...++||+|++.. ++ .+++ +.+.++..+|.|++|+.+++.+|++.++..
T Consensus 136 ~~~~~~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~~~~~~~~~~np--~L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 136 KPDNERDYGSEAIEILLQVMENQ--RDDLVVIFAGYKDRMDKFYESNP--GLSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred cCCCccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHHHHHHHhcCH--HHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 32 3455566666666542 3467777777643 11 1234 334444489999999999999999999984
No 143
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.56 E-value=8.9e-14 Score=161.72 Aligned_cols=209 Identities=15% Similarity=0.199 Sum_probs=141.8
Q ss_pred cCCCCCccccc-ChHHH--HHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEE
Q 002045 372 VDESVSFDDIG-GLSEY--IDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM 448 (976)
Q Consensus 372 ~~~~~~~~~i~-G~~~~--k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~ 448 (976)
..+..+|++++ |..+. ...+.++...| + ..++++||||||||||+|++++|+.+........++.
T Consensus 98 l~~~~tFdnFv~g~~n~~a~~~~~~~~~~~----------~--~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~y 165 (440)
T PRK14088 98 LNPDYTFENFVVGPGNSFAYHAALEVAKNP----------G--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMY 165 (440)
T ss_pred CCCCCcccccccCCchHHHHHHHHHHHhCc----------C--CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEE
Confidence 45788999954 75443 22333332211 1 1356999999999999999999999876544456677
Q ss_pred ecchhHHhhhHhHHHH-HHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecC
Q 002045 449 RKGADVLSKWVGEAER-QLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (976)
Q Consensus 449 ~~~~~l~~~~~g~~~~-~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~at 527 (976)
+++.+++..+...... .+.. |.......+.||+|||++.+.+.. .....|+..++.+...+..+||++.
T Consensus 166 i~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~---------~~q~elf~~~n~l~~~~k~iIitsd 235 (440)
T PRK14088 166 ITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKT---------GVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_pred EEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcH---------HHHHHHHHHHHHHHHcCCeEEEECC
Confidence 7888877665443221 1222 322223357899999999886431 1223344555544445566777666
Q ss_pred CCccc---cchhhcCCCCC--ccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Q 002045 528 NRVDA---IDGALRRPGRF--DREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIR 602 (976)
Q Consensus 528 n~~~~---ld~aL~r~gRf--~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~ 602 (976)
+.|.. +.+.+.+ || ..++.+.+|+.+.|..|++..+...++.+++++++.||....| +.++|..++......
T Consensus 236 ~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~ 312 (440)
T PRK14088 236 REPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVY 312 (440)
T ss_pred CCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHH
Confidence 66665 5567877 66 4577899999999999999999888889999999999998876 567777777765544
Q ss_pred HHH
Q 002045 603 AFR 605 (976)
Q Consensus 603 a~~ 605 (976)
+..
T Consensus 313 ~~~ 315 (440)
T PRK14088 313 KET 315 (440)
T ss_pred HHH
Confidence 433
No 144
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=7.4e-14 Score=163.14 Aligned_cols=193 Identities=20% Similarity=0.261 Sum_probs=145.2
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC-----------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ----------- 442 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~----------- 442 (976)
.+-+|++++|++.++..|+.++.. -+.+.++||+||+|||||++|+++|+.+.....
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILN------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 456899999999999999887654 144678999999999999999999999865321
Q ss_pred ------------cEEEEEecchhHHhhhHhHHHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCChhhhhHHHHHH
Q 002045 443 ------------KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVS 506 (976)
Q Consensus 443 ------------~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~----~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~ 506 (976)
...++.++++.- .....++.+++.+.. ....|+||||+|.|. ...++
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaas~------~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls-----------~~a~n 146 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAASK------TSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS-----------KGAFN 146 (507)
T ss_pred CChHHHHHhcCCCCcEEEeeccCC------CCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC-----------HHHHH
Confidence 112223322210 122345556655543 234599999999883 34567
Q ss_pred HHHHHhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccC
Q 002045 507 TLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVG 586 (976)
Q Consensus 507 ~Ll~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G 586 (976)
.|+..|+. ....+++|.+|+.+..+.+.+.+ |+ ..+.|..++.++...+++..+...+..++.+.+..|+..+.|
T Consensus 147 aLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G 221 (507)
T PRK06645 147 ALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG 221 (507)
T ss_pred HHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 78888884 44567777778888889999988 77 678999999999999999999998999999999999998876
Q ss_pred CCHHHHHHHHHHHHH
Q 002045 587 YCGADLKALCTEAAI 601 (976)
Q Consensus 587 ~s~~dI~~l~~~A~~ 601 (976)
+.+++.+++..++.
T Consensus 222 -slR~al~~Ldkai~ 235 (507)
T PRK06645 222 -SARDAVSILDQAAS 235 (507)
T ss_pred -CHHHHHHHHHHHHH
Confidence 77788777777653
No 145
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.55 E-value=2.7e-13 Score=159.19 Aligned_cols=209 Identities=15% Similarity=0.161 Sum_probs=141.0
Q ss_pred CCCCCccccc-ChHHH--HHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEe
Q 002045 373 DESVSFDDIG-GLSEY--IDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR 449 (976)
Q Consensus 373 ~~~~~~~~i~-G~~~~--k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~ 449 (976)
.+..+|++++ |..+. ...+..++.. .+ ...+.++|||++|||||+|+++||+.+........++++
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae~----------~~-~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yi 350 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAEA----------PA-KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYV 350 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHhC----------cc-ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 4678999954 55443 2233333322 11 223459999999999999999999998753333556677
Q ss_pred cchhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCC
Q 002045 450 KGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (976)
Q Consensus 450 ~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~ 529 (976)
++.+++..+...........|... ...+.||+||||+.+..+. .....|+.+++.+...++.+||++...
T Consensus 351 taeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke---------~tqeeLF~l~N~l~e~gk~IIITSd~~ 420 (617)
T PRK14086 351 SSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE---------STQEEFFHTFNTLHNANKQIVLSSDRP 420 (617)
T ss_pred eHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH---------HHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 888887766554333222233322 2346799999999886432 122345555555555555566654444
Q ss_pred cc---ccchhhcCCCCC--ccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q 002045 530 VD---AIDGALRRPGRF--DREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAF 604 (976)
Q Consensus 530 ~~---~ld~aL~r~gRf--~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~ 604 (976)
|. .+++.|.+ || ..++.+..|+.+.|..||+.++...++.++.++++.|+.+..+ +.+.|..++......+.
T Consensus 421 P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~ 497 (617)
T PRK14086 421 PKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFAS 497 (617)
T ss_pred hHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 44 46788988 76 5567999999999999999999999999999999999998875 46677777666544443
Q ss_pred H
Q 002045 605 R 605 (976)
Q Consensus 605 ~ 605 (976)
.
T Consensus 498 ~ 498 (617)
T PRK14086 498 L 498 (617)
T ss_pred h
Confidence 3
No 146
>smart00297 BROMO bromo domain.
Probab=99.55 E-value=6.7e-15 Score=137.67 Aligned_cols=80 Identities=31% Similarity=0.592 Sum_probs=72.7
Q ss_pred HhHhhhhhhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 897 RRLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 897 reLr~~L~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
+.+...+..++..+..++.+++|..||++..+|+|+.+|++||||.||++||+++.|.|+.+|.+||.|||.||..||++
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n~~ 85 (107)
T smart00297 6 KKLQSLLKAVLDKLDSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYNGP 85 (107)
T ss_pred HHHHHHHHHHHHHHHhCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 34555566677777778889999999999999999999999999999999999999999999999999999999999975
No 147
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.55 E-value=8.9e-15 Score=136.88 Aligned_cols=64 Identities=22% Similarity=0.402 Sum_probs=60.2
Q ss_pred cccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 913 DKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 913 ~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
+..+.+|..+++...+|+||++|++||||+||++||.++.|.|+++|.+||.|||+||+.||++
T Consensus 23 ~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~ 86 (113)
T cd05524 23 RILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKAYYKP 86 (113)
T ss_pred CchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4446789999999999999999999999999999999999999999999999999999999986
No 148
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.55 E-value=6.5e-15 Score=131.34 Aligned_cols=73 Identities=33% Similarity=0.584 Sum_probs=67.7
Q ss_pred hhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 904 RDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 904 ~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
+++++.+..++.++.|..||++..+|+|+.+|++||||.+|++||+++.|.|+.+|.+||.+||.||..||++
T Consensus 2 ~~il~~l~~~~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~ 74 (84)
T PF00439_consen 2 REILEELMKHPISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPP 74 (84)
T ss_dssp HHHHHHHHTSTTGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHcCCCchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCC
Confidence 4577888889999999999999999999999999999999999999999999999999999999999999985
No 149
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=3.7e-13 Score=155.87 Aligned_cols=208 Identities=20% Similarity=0.295 Sum_probs=144.3
Q ss_pred cccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEec-chhHH---
Q 002045 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK-GADVL--- 455 (976)
Q Consensus 380 ~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~-~~~l~--- 455 (976)
+-.|++.+|+.|.+++..-. +... -...-++|+||||+|||+|++.||+.+++.+.++.+--+. -+++-
T Consensus 324 dHYGLekVKeRIlEyLAV~~----l~~~---~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQK----LTKK---LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccCchhHHHHHHHHHHHHH----Hhcc---CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 56899999999999876521 1111 2235788999999999999999999998544222211111 12222
Q ss_pred hhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCC-------------CCcEE
Q 002045 456 SKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS-------------RGQVV 522 (976)
Q Consensus 456 ~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~-------------~~~vi 522 (976)
..|+|.....+-+-+..|...+| |++|||||.|...-.+.. -++||..||.-.. -.+|+
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDP-------aSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDP-------ASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCCh-------HHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 25888888888888888888888 999999999974422221 1346666653221 24799
Q ss_pred EEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhc-----C-----CCCCCHHHHHHHHHHcc---CCC-
Q 002045 523 LIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK-----W-----KQPPSRELKSELAASCV---GYC- 588 (976)
Q Consensus 523 vI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~-----~-----~~~~~~~~l~~lA~~t~---G~s- 588 (976)
+|+|+|..+.|+.+|+. |. .+|.++-++.++..+|.+.|+=. . .+.++++.+..|..... |.-
T Consensus 469 FiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~ 545 (782)
T COG0466 469 FIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRN 545 (782)
T ss_pred EEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhH
Confidence 99999999999999998 88 78999999999999999977622 2 34456666655554322 211
Q ss_pred -HHHHHHHHHHHHHHHHH
Q 002045 589 -GADLKALCTEAAIRAFR 605 (976)
Q Consensus 589 -~~dI~~l~~~A~~~a~~ 605 (976)
-++|..+|+.++..-+.
T Consensus 546 LeR~i~ki~RK~~~~i~~ 563 (782)
T COG0466 546 LEREIAKICRKAAKKILL 563 (782)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 14677777777766555
No 150
>PRK08727 hypothetical protein; Validated
Probab=99.54 E-value=3.7e-13 Score=143.89 Aligned_cols=195 Identities=22% Similarity=0.250 Sum_probs=128.0
Q ss_pred CcccCCCCCcccc-cChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEE
Q 002045 369 PLQVDESVSFDDI-GGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (976)
Q Consensus 369 ~~~~~~~~~~~~i-~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (976)
+++..+..+|+++ +|..+....+..... + .....++|+||+|||||+|+++++..+...+..+.|+
T Consensus 9 ~~~~~~~~~f~~f~~~~~n~~~~~~~~~~------------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~ 75 (233)
T PRK08727 9 ALRYPSDQRFDSYIAAPDGLLAQLQALAA------------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYL 75 (233)
T ss_pred cCCCCCcCChhhccCCcHHHHHHHHHHHh------------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 3455577899995 555555444433221 1 2234699999999999999999999988777666655
Q ss_pred EecchhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecC
Q 002045 448 MRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (976)
Q Consensus 448 ~~~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~at 527 (976)
. ..++.. .+...++... +..+|+|||++.+..... ....|+..++.....+.-+|+++.
T Consensus 76 ~--~~~~~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~~---------~~~~lf~l~n~~~~~~~~vI~ts~ 134 (233)
T PRK08727 76 P--LQAAAG--------RLRDALEALE--GRSLVALDGLESIAGQRE---------DEVALFDFHNRARAAGITLLYTAR 134 (233)
T ss_pred e--HHHhhh--------hHHHHHHHHh--cCCEEEEeCcccccCChH---------HHHHHHHHHHHHHHcCCeEEEECC
Confidence 4 333221 1223333332 346999999998863211 122344444443333434555555
Q ss_pred CCcccc---chhhcCCCCC--ccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 002045 528 NRVDAI---DGALRRPGRF--DREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAA 600 (976)
Q Consensus 528 n~~~~l---d~aL~r~gRf--~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~ 600 (976)
..|..+ .+.|.+ || ..++.|+.|+.+++.+|++.++...++.++++.++.|+.++.| ..+.+.+++....
T Consensus 135 ~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~ 209 (233)
T PRK08727 135 QMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLD 209 (233)
T ss_pred CChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 566654 688988 76 5678999999999999999988877889999999999999875 3333444454433
No 151
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.54 E-value=2.8e-13 Score=153.55 Aligned_cols=184 Identities=21% Similarity=0.228 Sum_probs=129.3
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
.+.+|++|+|++.+++.|..++.. ....++||+||||||||++|+++++.+....+...++.+++.+
T Consensus 10 ~P~~~~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 10 RPALLEDILGQDEVVERLSRAVDS-------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred CCCcHHHhcCCHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 456799999999999999887654 1223799999999999999999999987554344566777766
Q ss_pred HHhhh-------------HhH-------HHHHHHHHHHHHHh-----cCCcEEEEccccccCCCCCChhhhhHHHHHHHH
Q 002045 454 VLSKW-------------VGE-------AERQLKLLFEEAQR-----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTL 508 (976)
Q Consensus 454 l~~~~-------------~g~-------~~~~l~~~f~~a~~-----~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~L 508 (976)
+.... .+. ....++.+...... ..+.+|||||+|.|. ......|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~-----------~~~~~~L 145 (337)
T PRK12402 77 FFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR-----------EDAQQAL 145 (337)
T ss_pred hhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC-----------HHHHHHH
Confidence 54221 111 01223333323222 224599999999883 2234456
Q ss_pred HHHhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccC
Q 002045 509 LALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVG 586 (976)
Q Consensus 509 l~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G 586 (976)
+..++.... ...+|.+++.+..+.+.|.+ |+ ..+.|.+|+.+++..+++..+...+..++.+.++.|+..+.|
T Consensus 146 ~~~le~~~~--~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g 218 (337)
T PRK12402 146 RRIMEQYSR--TCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG 218 (337)
T ss_pred HHHHHhccC--CCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 666764433 23344455555667777877 65 578999999999999999999998888999999999998854
No 152
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.53 E-value=2.2e-14 Score=132.33 Aligned_cols=64 Identities=25% Similarity=0.390 Sum_probs=61.6
Q ss_pred cccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 913 DKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 913 ~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
++.+++|..+++...+|+|+++|++||||+||++||..+.|.|+++|..|+.|||.||+.||++
T Consensus 22 ~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn~~ 85 (104)
T cd05522 22 RLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLYNEN 85 (104)
T ss_pred CcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 5668899999999999999999999999999999999999999999999999999999999986
No 153
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=2.3e-13 Score=159.79 Aligned_cols=191 Identities=21% Similarity=0.220 Sum_probs=138.8
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (976)
.+.+|++|+|++.+++.|+.++... ..+..+||+||||||||++|+++|+.+...+
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc 76 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC 76 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh
Confidence 3578999999999999999987641 2344569999999999999999999986432
Q ss_pred ------CcEEEEEecchhHHhhhHhHHHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHH
Q 002045 442 ------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLAL 511 (976)
Q Consensus 442 ------~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~----~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ 511 (976)
....++.+++.... ....++.+...+. ...+.||||||+|.+. ...++.|+..
T Consensus 77 ~~i~~~~h~dv~el~~~~~~------~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-----------~~a~naLLk~ 139 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAASNN------SVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-----------KSAFNALLKT 139 (504)
T ss_pred HHHhcCCCCceEEecccccC------CHHHHHHHHHHHhhccccCCCeEEEEECccccC-----------HHHHHHHHHH
Confidence 12234444443111 1122344433332 2345699999999773 3456778888
Q ss_pred hhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHH
Q 002045 512 MDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGAD 591 (976)
Q Consensus 512 ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~d 591 (976)
|+.. ...+++|.+|+.+..+.+.+.+ |+ ..+.|..|+.++...+++..+...++.++.+.+..|+..+.| ..+.
T Consensus 140 LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dlR~ 213 (504)
T PRK14963 140 LEEP--PEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AMRD 213 (504)
T ss_pred HHhC--CCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 8743 3466777778888889999988 66 579999999999999999999998888999999999988876 4455
Q ss_pred HHHHHHHH
Q 002045 592 LKALCTEA 599 (976)
Q Consensus 592 I~~l~~~A 599 (976)
+.+++..+
T Consensus 214 aln~Lekl 221 (504)
T PRK14963 214 AESLLERL 221 (504)
T ss_pred HHHHHHHH
Confidence 55555544
No 154
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2.3e-13 Score=161.36 Aligned_cols=192 Identities=17% Similarity=0.172 Sum_probs=141.2
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (976)
.+.+|++|+|++.+++.|+.++... ..+..+||+||+|||||++|+++|+.+....
T Consensus 8 RP~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 75 (584)
T PRK14952 8 RPATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES 75 (584)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH
Confidence 3568999999999999999987641 3344579999999999999999999987421
Q ss_pred ---------CcEEEEEecchhHHhhhHhHHHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCChhhhhHHHHHHHH
Q 002045 442 ---------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTL 508 (976)
Q Consensus 442 ---------~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~----~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~L 508 (976)
....++.++++... .+. .++.+.+.+. .....|+||||+|.|. ...++.|
T Consensus 76 C~~i~~~~~~~~dvieidaas~~--gvd----~iRel~~~~~~~P~~~~~KVvIIDEah~Lt-----------~~A~NAL 138 (584)
T PRK14952 76 CVALAPNGPGSIDVVELDAASHG--GVD----DTRELRDRAFYAPAQSRYRIFIVDEAHMVT-----------TAGFNAL 138 (584)
T ss_pred HHHhhcccCCCceEEEecccccc--CHH----HHHHHHHHHHhhhhcCCceEEEEECCCcCC-----------HHHHHHH
Confidence 12334444443211 122 2333333322 2334599999999983 3467789
Q ss_pred HHHhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCC
Q 002045 509 LALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYC 588 (976)
Q Consensus 509 l~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s 588 (976)
|..|+. ....+++|.+|+.+..|.+.+++ |+ ..+.|..++.++..++|...+...+..++.+.+..++..+.| +
T Consensus 139 LK~LEE--pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G-d 212 (584)
T PRK14952 139 LKIVEE--PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG-S 212 (584)
T ss_pred HHHHhc--CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 999984 44577888888888899999998 74 789999999999999999999988888888888888776654 5
Q ss_pred HHHHHHHHHHHH
Q 002045 589 GADLKALCTEAA 600 (976)
Q Consensus 589 ~~dI~~l~~~A~ 600 (976)
.+++.+++..++
T Consensus 213 lR~aln~Ldql~ 224 (584)
T PRK14952 213 PRDTLSVLDQLL 224 (584)
T ss_pred HHHHHHHHHHHH
Confidence 667777776654
No 155
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.52 E-value=1.9e-13 Score=158.63 Aligned_cols=182 Identities=27% Similarity=0.344 Sum_probs=129.2
Q ss_pred CCCcccccChHHHHHH---HHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecc
Q 002045 375 SVSFDDIGGLSEYIDA---LKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~---l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~ 451 (976)
+.+|++++|++.++.. |..++.. ....++||+||||||||++|+++|+.+. ..|+.+++
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~-----~~~~~l~a 69 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATD-----APFEALSA 69 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEec
Confidence 4678999999998766 7776643 2345899999999999999999999885 45555555
Q ss_pred hhHHhhhHhHHHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecC
Q 002045 452 ADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (976)
Q Consensus 452 ~~l~~~~~g~~~~~l~~~f~~a~----~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~at 527 (976)
.... ...++.+++.+. .+...||||||+|.+. ...+..|+..++. +.+++|++|
T Consensus 70 ~~~~-------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~-----------~~~q~~LL~~le~----~~iilI~at 127 (413)
T PRK13342 70 VTSG-------VKDLREVIEEARQRRSAGRRTILFIDEIHRFN-----------KAQQDALLPHVED----GTITLIGAT 127 (413)
T ss_pred cccc-------HHHHHHHHHHHHHhhhcCCceEEEEechhhhC-----------HHHHHHHHHHhhc----CcEEEEEeC
Confidence 4221 122334444432 3356799999999884 2345567777663 456777665
Q ss_pred --CCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcC--CC-CCCHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 002045 528 --NRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW--KQ-PPSRELKSELAASCVGYCGADLKALCTEAA 600 (976)
Q Consensus 528 --n~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~--~~-~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~ 600 (976)
|....++++|++ |+ .++.|++++.++...+++..+... ++ .++++.+..++..+.| ..+.+.+++..++
T Consensus 128 t~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 128 TENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred CCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 334578999999 77 789999999999999999877643 33 6788888889888855 4555556665554
No 156
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.52 E-value=3.8e-13 Score=143.43 Aligned_cols=198 Identities=20% Similarity=0.237 Sum_probs=134.5
Q ss_pred ccCCCCCccccc--ChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEE
Q 002045 371 QVDESVSFDDIG--GLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM 448 (976)
Q Consensus 371 ~~~~~~~~~~i~--G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~ 448 (976)
......+|++++ +...+++.++.++.. ..+.+++|+||+|||||++|+++++.+...+ ..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~--~~~~~ 71 (226)
T TIGR03420 7 GLPDDPTFDNFYAGGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERG--KSAIY 71 (226)
T ss_pred CCCCchhhcCcCcCCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcC--CcEEE
Confidence 344567788875 466677777776431 4467899999999999999999999987554 35566
Q ss_pred ecchhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCC
Q 002045 449 RKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (976)
Q Consensus 449 ~~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn 528 (976)
+++..+.... ..++.... .+.+|||||+|.+.... .....|+.+++.....+..+||+++.
T Consensus 72 i~~~~~~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~---------~~~~~L~~~l~~~~~~~~~iIits~~ 132 (226)
T TIGR03420 72 LPLAELAQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP---------EWQEALFHLYNRVREAGGRLLIAGRA 132 (226)
T ss_pred EeHHHHHHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh---------HHHHHHHHHHHHHHHcCCeEEEECCC
Confidence 7777765332 12222222 23599999999885320 11233444444322233445555554
Q ss_pred Cccccc---hhhcCCCCC--ccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Q 002045 529 RVDAID---GALRRPGRF--DREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRA 603 (976)
Q Consensus 529 ~~~~ld---~aL~r~gRf--~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a 603 (976)
.+..+. +.|.+ |+ ...|.+++|+.+++..+++.++...+..++.+.+..|+.. -+-+.+++.+++..+...+
T Consensus 133 ~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~ 209 (226)
T TIGR03420 133 APAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRAS 209 (226)
T ss_pred ChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHH
Confidence 444332 66666 55 4689999999999999999988888888999999999996 4458899999988876544
Q ss_pred HH
Q 002045 604 FR 605 (976)
Q Consensus 604 ~~ 605 (976)
..
T Consensus 210 ~~ 211 (226)
T TIGR03420 210 LA 211 (226)
T ss_pred HH
Confidence 44
No 157
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=1.9e-13 Score=167.90 Aligned_cols=196 Identities=19% Similarity=0.166 Sum_probs=141.1
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (976)
...+|++|+|++.+++.|+.++.. -+.+..+||+||+|||||++|++||+.+.+..
T Consensus 10 RP~~f~eiiGqe~v~~~L~~~i~~------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s 77 (824)
T PRK07764 10 RPATFAEVIGQEHVTEPLSTALDS------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS 77 (824)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH
Confidence 456899999999999999988754 13344589999999999999999999996421
Q ss_pred ---------CcEEEEEecchhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHh
Q 002045 442 ---------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALM 512 (976)
Q Consensus 442 ---------~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~l 512 (976)
....++.+++.... .+.+.......++.........|+||||+|.|. ....+.||..|
T Consensus 78 C~~~~~g~~~~~dv~eidaas~~--~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt-----------~~a~NaLLK~L 144 (824)
T PRK07764 78 CVALAPGGPGSLDVTEIDAASHG--GVDDARELRERAFFAPAESRYKIFIIDEAHMVT-----------PQGFNALLKIV 144 (824)
T ss_pred HHHHHcCCCCCCcEEEecccccC--CHHHHHHHHHHHHhchhcCCceEEEEechhhcC-----------HHHHHHHHHHH
Confidence 11233444432211 122222222222222223445699999999993 45677899999
Q ss_pred hccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHH
Q 002045 513 DGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADL 592 (976)
Q Consensus 513 d~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI 592 (976)
+.. ...++||++|+.++.|-+.|++ |+ .+|.|..++.++...+|...+...++.++...+..|+..+.| +.+++
T Consensus 145 EEp--P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR~A 218 (824)
T PRK07764 145 EEP--PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVRDS 218 (824)
T ss_pred hCC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 853 4567777777888888889988 65 678999999999999999999988888898888888887776 56666
Q ss_pred HHHHHHHH
Q 002045 593 KALCTEAA 600 (976)
Q Consensus 593 ~~l~~~A~ 600 (976)
.+++...+
T Consensus 219 l~eLEKLi 226 (824)
T PRK07764 219 LSVLDQLL 226 (824)
T ss_pred HHHHHHHH
Confidence 66666544
No 158
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=2.6e-13 Score=161.41 Aligned_cols=192 Identities=21% Similarity=0.234 Sum_probs=141.8
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (976)
..-+|++|+|++.+++.|+.++..- ..+..+||+||+|||||++|+++|+.+.+.+
T Consensus 11 RP~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC 78 (618)
T PRK14951 11 RPRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC 78 (618)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC
Confidence 3468999999999999999987641 3345679999999999999999999987532
Q ss_pred ------------CcEEEEEecchhHHhhhHhHHHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCChhhhhHHHHH
Q 002045 442 ------------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIV 505 (976)
Q Consensus 442 ------------~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~----~~p~VL~iDEid~L~~~r~~~~~~~~~~~~ 505 (976)
....++.+++..-. .-..++.+.+.+.. +...|+||||+|.|. ....
T Consensus 79 g~C~~C~~i~~g~h~D~~eldaas~~------~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls-----------~~a~ 141 (618)
T PRK14951 79 GVCQACRDIDSGRFVDYTELDAASNR------GVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT-----------NTAF 141 (618)
T ss_pred CccHHHHHHHcCCCCceeecCccccc------CHHHHHHHHHHHHhCcccCCceEEEEEChhhCC-----------HHHH
Confidence 11123333332210 11234555554432 224599999999984 3456
Q ss_pred HHHHHHhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcc
Q 002045 506 STLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCV 585 (976)
Q Consensus 506 ~~Ll~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~ 585 (976)
+.|+..|+. ....+++|.+|+.+..+.+.+++ |+ ..|.|..++.++..+.|+..+...++.++.+.+..|+..+.
T Consensus 142 NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~ 216 (618)
T PRK14951 142 NAMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAAR 216 (618)
T ss_pred HHHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 778888884 34567777777778888888888 66 78999999999999999999998899999998899998887
Q ss_pred CCCHHHHHHHHHHHH
Q 002045 586 GYCGADLKALCTEAA 600 (976)
Q Consensus 586 G~s~~dI~~l~~~A~ 600 (976)
| +.+++.+++..+.
T Consensus 217 G-slR~al~lLdq~i 230 (618)
T PRK14951 217 G-SMRDALSLTDQAI 230 (618)
T ss_pred C-CHHHHHHHHHHHH
Confidence 7 6677777765544
No 159
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.51 E-value=7.5e-13 Score=151.80 Aligned_cols=230 Identities=23% Similarity=0.227 Sum_probs=148.7
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC----CcEEEEEe
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG----QKVSFYMR 449 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~----~~~~~~~~ 449 (976)
+....+.++|.+..++.|..++...+ . + ..+.+++|+||||||||++++++++.+.... ..+.++.+
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~------~--~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~i 80 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPIL------R--G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYV 80 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHH------c--C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEE
Confidence 34455689999999999988875321 1 1 3456899999999999999999999875422 22567777
Q ss_pred cchhH------HhhhHhH--------------HHHHHHHHHHHHH-hcCCcEEEEccccccCCCCCChhhhhHHHHHHHH
Q 002045 450 KGADV------LSKWVGE--------------AERQLKLLFEEAQ-RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTL 508 (976)
Q Consensus 450 ~~~~l------~~~~~g~--------------~~~~l~~~f~~a~-~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~L 508 (976)
+|... +...... ....+..++.... ...+.||+|||+|.|... ...++..|
T Consensus 81 n~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~--------~~~~L~~l 152 (365)
T TIGR02928 81 NCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD--------DDDLLYQL 152 (365)
T ss_pred ECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC--------CcHHHHhH
Confidence 76432 1111111 1222344444443 244679999999999721 12355566
Q ss_pred HHHhhcc-CCCCcEEEEecCCCcc---ccchhhcCCCCCc-cccCCCCCCHHHHHHHHHHHHhc--CCCCCCHHHHHHHH
Q 002045 509 LALMDGL-DSRGQVVLIGATNRVD---AIDGALRRPGRFD-REFNFPLPGCEARAEILDIHTRK--WKQPPSRELKSELA 581 (976)
Q Consensus 509 l~~ld~~-~~~~~vivI~atn~~~---~ld~aL~r~gRf~-~~i~~~~P~~~er~~Il~~~l~~--~~~~~~~~~l~~lA 581 (976)
+.+.+.. ....++.+|+++|.+. .+++.+.+ ||. ..|.|++++.+++.+|++..+.. ....++++.++.++
T Consensus 153 ~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~ 230 (365)
T TIGR02928 153 SRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCA 230 (365)
T ss_pred hccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHH
Confidence 6552211 2235788899998875 47777777 674 67999999999999999988862 22235566555544
Q ss_pred H---HccCCCHHHHHHHHHHHHHHHHHhhCCccccCcccccccccceeEeehhhhhccccc
Q 002045 582 A---SCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (976)
Q Consensus 582 ~---~t~G~s~~dI~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~i 639 (976)
. .+.|. .+.+..+|..|+..|..+.. ..|+.+++..|+..+
T Consensus 231 ~~~~~~~Gd-~R~al~~l~~a~~~a~~~~~----------------~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 231 ALAAQEHGD-ARKAIDLLRVAGEIAEREGA----------------ERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHhcCC-HHHHHHHHHHHHHHHHHcCC----------------CCCCHHHHHHHHHHH
Confidence 4 34453 45556678888777765432 237777887776655
No 160
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.51 E-value=1.7e-14 Score=132.77 Aligned_cols=61 Identities=21% Similarity=0.335 Sum_probs=56.2
Q ss_pred ccccccCCC---C--CCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 916 FSAFHYPVT---D--EDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 916 ~~~F~~PV~---~--~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
.++|..||. + ..+|+|+.+|++||||+||++||++++|+++++|.+||.|||+||..||++
T Consensus 19 ~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~ 84 (109)
T cd05492 19 DTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGA 84 (109)
T ss_pred cccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 478888885 3 259999999999999999999999999999999999999999999999975
No 161
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=2.7e-13 Score=161.83 Aligned_cols=192 Identities=20% Similarity=0.235 Sum_probs=143.7
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (976)
.+.+|++|+|++.+++.|+..+.. -..+..+||+||+|||||++|+.+|+.+....
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 356899999999999999998764 13456689999999999999999999986432
Q ss_pred -------CcEEEEEecchhHHhhhHhHHHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHH
Q 002045 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (976)
Q Consensus 442 -------~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~----~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~ 510 (976)
....++.++++. +..-..++.+.+.+.. ....|+||||+|.|. ....+.|+.
T Consensus 79 C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt-----------~~a~naLLK 141 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS-----------TGAFNALLK 141 (559)
T ss_pred HHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-----------HHHHHHHHH
Confidence 112333443321 1122345555555442 234699999999883 345678888
Q ss_pred HhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 002045 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (976)
Q Consensus 511 ~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~ 590 (976)
.|+. ....+++|.+|+.+..|.+.+++ |+ ..+.|..|+..+...+++..+...++.++.+.+..++..+.| +.+
T Consensus 142 tLEe--pp~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R 215 (559)
T PRK05563 142 TLEE--PPAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMR 215 (559)
T ss_pred HhcC--CCCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8884 34567777778888999999988 76 568899999999999999999998989999998989988876 667
Q ss_pred HHHHHHHHHH
Q 002045 591 DLKALCTEAA 600 (976)
Q Consensus 591 dI~~l~~~A~ 600 (976)
++.+++..+.
T Consensus 216 ~al~~Ldq~~ 225 (559)
T PRK05563 216 DALSILDQAI 225 (559)
T ss_pred HHHHHHHHHH
Confidence 7777766554
No 162
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.51 E-value=2.2e-13 Score=155.20 Aligned_cols=191 Identities=21% Similarity=0.253 Sum_probs=130.1
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC--------------
Q 002045 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ-------------- 442 (976)
Q Consensus 377 ~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~-------------- 442 (976)
.|++|+|++.+++.|+.++..+..+ +..++...+..+||+||||+|||++|+++|+.+.....
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~---~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARAD---VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccc---ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 4889999999999999999875432 22233345778999999999999999999998864321
Q ss_pred ----cEEEEEecchhHHhhhHhHHHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhc
Q 002045 443 ----KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDG 514 (976)
Q Consensus 443 ----~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~----~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~ 514 (976)
...++.+.... ... .-..++.+++.+.. +...|+||||+|.|. ....+.|+..|+.
T Consensus 80 ~~~~hpD~~~i~~~~-~~i----~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~-----------~~aanaLLk~LEe 143 (394)
T PRK07940 80 LAGTHPDVRVVAPEG-LSI----GVDEVRELVTIAARRPSTGRWRIVVIEDADRLT-----------ERAANALLKAVEE 143 (394)
T ss_pred hcCCCCCEEEecccc-ccC----CHHHHHHHHHHHHhCcccCCcEEEEEechhhcC-----------HHHHHHHHHHhhc
Confidence 01111121110 011 12235666665543 334699999999994 3345778888885
Q ss_pred cCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHH
Q 002045 515 LDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKA 594 (976)
Q Consensus 515 ~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~ 594 (976)
. ..++++|.+|+.++.|.+.+++ |+ ..|.|++|+.++..++|.... + .+.+....++..+.|..+..+.-
T Consensus 144 p--~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~--~~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 144 P--PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---G--VDPETARRAARASQGHIGRARRL 213 (394)
T ss_pred C--CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---C--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 3 3344555555558899999998 77 689999999999888876322 2 34555677888888887766555
Q ss_pred HH
Q 002045 595 LC 596 (976)
Q Consensus 595 l~ 596 (976)
+.
T Consensus 214 ~~ 215 (394)
T PRK07940 214 AT 215 (394)
T ss_pred hc
Confidence 43
No 163
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.51 E-value=5e-13 Score=141.23 Aligned_cols=204 Identities=18% Similarity=0.232 Sum_probs=134.3
Q ss_pred CCCCCcccc-cCh--HHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEe
Q 002045 373 DESVSFDDI-GGL--SEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR 449 (976)
Q Consensus 373 ~~~~~~~~i-~G~--~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~ 449 (976)
++..+|+++ +|- ..+...+..+...| + .....++||||+|+|||+|++++++++........++.+
T Consensus 2 n~~~tFdnfv~g~~N~~a~~~~~~ia~~~----------~-~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~ 70 (219)
T PF00308_consen 2 NPKYTFDNFVVGESNELAYAAAKAIAENP----------G-ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL 70 (219)
T ss_dssp -TT-SCCCS--TTTTHHHHHHHHHHHHST----------T-TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE
T ss_pred CCCCccccCCcCCcHHHHHHHHHHHHhcC----------C-CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceee
Confidence 367899996 463 33444454443331 1 223469999999999999999999998765445667778
Q ss_pred cchhHHhhhHhHHHH-HHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCC
Q 002045 450 KGADVLSKWVGEAER-QLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (976)
Q Consensus 450 ~~~~l~~~~~g~~~~-~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn 528 (976)
++.++...+...... .+..+.+.. ....+|+||+++.+.. ....+..|+.+++.+...++.+||++..
T Consensus 71 ~~~~f~~~~~~~~~~~~~~~~~~~~--~~~DlL~iDDi~~l~~---------~~~~q~~lf~l~n~~~~~~k~li~ts~~ 139 (219)
T PF00308_consen 71 SAEEFIREFADALRDGEIEEFKDRL--RSADLLIIDDIQFLAG---------KQRTQEELFHLFNRLIESGKQLILTSDR 139 (219)
T ss_dssp EHHHHHHHHHHHHHTTSHHHHHHHH--CTSSEEEEETGGGGTT---------HHHHHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred cHHHHHHHHHHHHHcccchhhhhhh--hcCCEEEEecchhhcC---------chHHHHHHHHHHHHHHhhCCeEEEEeCC
Confidence 888887665543322 122222222 2356999999999852 2345566777777666677777777766
Q ss_pred Cccc---cchhhcCCCCCc--cccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHH
Q 002045 529 RVDA---IDGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAI 601 (976)
Q Consensus 529 ~~~~---ld~aL~r~gRf~--~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~ 601 (976)
.|.. +++.|.+ ||. .++.+..|+.+.|..|++..+...++.+++++++.|+....+ +.+.|..++.....
T Consensus 140 ~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 140 PPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRLDA 214 (219)
T ss_dssp -TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHHH
T ss_pred CCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHHH
Confidence 6665 5677877 764 478899999999999999999999999999999999998765 66777777665443
No 164
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=3.9e-13 Score=158.68 Aligned_cols=192 Identities=20% Similarity=0.188 Sum_probs=136.5
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (976)
...+|++|+|++.+++.|..++..- +.+..+||+||+|||||++|+++|+.+....
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~s 78 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQ 78 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHH
Confidence 4578999999999999999887541 2346899999999999999999999986431
Q ss_pred -------CcEEEEEecchhHHhhhHhHHHHHHHHHHHHH-HhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhh
Q 002045 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEA-QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMD 513 (976)
Q Consensus 442 -------~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a-~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld 513 (976)
....++.+++..- ..+..... +...+... ......||||||+|.|. ...++.|+..|+
T Consensus 79 C~~i~~g~hpDv~eId~a~~--~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt-----------~~a~naLLk~LE 144 (624)
T PRK14959 79 CRKVTQGMHVDVVEIDGASN--RGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLT-----------REAFNALLKTLE 144 (624)
T ss_pred HHHHhcCCCCceEEEecccc--cCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCC-----------HHHHHHHHHHhh
Confidence 1122344443211 11122211 22222211 22335699999999883 345678888888
Q ss_pred ccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHH
Q 002045 514 GLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLK 593 (976)
Q Consensus 514 ~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~ 593 (976)
. ....+++|++|+.+..+.+.|++ |+ .+|.|+.++.++...+|+..+...++.++.+.+..|+..+.| +.+++.
T Consensus 145 E--P~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G-dlR~Al 218 (624)
T PRK14959 145 E--PPARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG-SVRDSM 218 (624)
T ss_pred c--cCCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 5 33567888888888888888888 76 578999999999999999999888888899999999988876 334444
Q ss_pred HHHH
Q 002045 594 ALCT 597 (976)
Q Consensus 594 ~l~~ 597 (976)
+++.
T Consensus 219 ~lLe 222 (624)
T PRK14959 219 SLLG 222 (624)
T ss_pred HHHH
Confidence 4444
No 165
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.51 E-value=5.2e-13 Score=142.53 Aligned_cols=195 Identities=18% Similarity=0.207 Sum_probs=130.8
Q ss_pred cccCCCCCccccc--ChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEE
Q 002045 370 LQVDESVSFDDIG--GLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (976)
Q Consensus 370 ~~~~~~~~~~~i~--G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (976)
+...+..+|++++ +...++..++.+.. +.....+++|+||+|||||++|+++++.+...+. .+.
T Consensus 9 ~~~~~~~~~d~f~~~~~~~~~~~l~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~--~~~ 74 (227)
T PRK08903 9 LGPPPPPTFDNFVAGENAELVARLRELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGR--NAR 74 (227)
T ss_pred CCCCChhhhcccccCCcHHHHHHHHHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCC--cEE
Confidence 4445678899965 33455566655443 1244578999999999999999999999865554 444
Q ss_pred EecchhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecC
Q 002045 448 MRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (976)
Q Consensus 448 ~~~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~at 527 (976)
.+++..+... +. ......+|||||+|.+.+ ..+..|+..++.....+..+||.++
T Consensus 75 ~i~~~~~~~~------------~~--~~~~~~~liiDdi~~l~~-----------~~~~~L~~~~~~~~~~~~~~vl~~~ 129 (227)
T PRK08903 75 YLDAASPLLA------------FD--FDPEAELYAVDDVERLDD-----------AQQIALFNLFNRVRAHGQGALLVAG 129 (227)
T ss_pred EEehHHhHHH------------Hh--hcccCCEEEEeChhhcCc-----------hHHHHHHHHHHHHHHcCCcEEEEeC
Confidence 5555554321 11 122356999999998742 1233455555544444554344444
Q ss_pred C-Ccc--ccchhhcCCCCC--ccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Q 002045 528 N-RVD--AIDGALRRPGRF--DREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIR 602 (976)
Q Consensus 528 n-~~~--~ld~aL~r~gRf--~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~ 602 (976)
+ .+. .+.+.|.+ || ...+.+++|+..++..++..++...++.++++.++.|+....| +.+++.++++.....
T Consensus 130 ~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~ 206 (227)
T PRK08903 130 PAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRY 206 (227)
T ss_pred CCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHH
Confidence 3 332 24566776 66 5689999999999999999988888899999999999996554 778888888875544
Q ss_pred HHHh
Q 002045 603 AFRE 606 (976)
Q Consensus 603 a~~~ 606 (976)
+...
T Consensus 207 ~~~~ 210 (227)
T PRK08903 207 SLEQ 210 (227)
T ss_pred HHHh
Confidence 4443
No 166
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=4.8e-13 Score=157.10 Aligned_cols=191 Identities=20% Similarity=0.211 Sum_probs=139.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCc----------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQK---------- 443 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~---------- 443 (976)
.+.+|++|+|++.+++.|..++.. -..+..+||+||+|||||++|+++|+.+.+..+.
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~s 78 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILN------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSV 78 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 456899999999999999887754 1345679999999999999999999998643211
Q ss_pred ---------EEEEEecchhHHhhhHhHHHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHH
Q 002045 444 ---------VSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (976)
Q Consensus 444 ---------~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~----~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~ 510 (976)
..++.++++.. . .-..++.+...+.. ....|++|||+|.|. ....+.|+.
T Consensus 79 Cr~i~~~~h~DiieIdaas~--i----gVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt-----------~~A~NaLLK 141 (605)
T PRK05896 79 CESINTNQSVDIVELDAASN--N----GVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS-----------TSAWNALLK 141 (605)
T ss_pred HHHHHcCCCCceEEeccccc--c----CHHHHHHHHHHHHhchhhCCcEEEEEechHhCC-----------HHHHHHHHH
Confidence 12333333221 1 11234444444332 223599999999883 235578888
Q ss_pred HhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 002045 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (976)
Q Consensus 511 ~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~ 590 (976)
.|+. ....+++|++|+.+..|.+.+++ |+ ..+.|+.++.++...+|...+...+..++.+.+..++..+.| +.+
T Consensus 142 tLEE--Pp~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dlR 215 (605)
T PRK05896 142 TLEE--PPKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SLR 215 (605)
T ss_pred HHHh--CCCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 8884 34567777788888899999988 76 579999999999999999999888888888888888888876 556
Q ss_pred HHHHHHHHH
Q 002045 591 DLKALCTEA 599 (976)
Q Consensus 591 dI~~l~~~A 599 (976)
++.+++..+
T Consensus 216 ~AlnlLekL 224 (605)
T PRK05896 216 DGLSILDQL 224 (605)
T ss_pred HHHHHHHHH
Confidence 666666553
No 167
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=4.8e-13 Score=157.24 Aligned_cols=192 Identities=19% Similarity=0.197 Sum_probs=138.9
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (976)
.+.+|++|+|++.+++.|..++..- ..+..+||+||+|||||++|+++|+.+....
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 3568999999999999998887541 3345689999999999999999999886421
Q ss_pred -------CcEEEEEecchhHHhhhHhHHHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHH
Q 002045 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (976)
Q Consensus 442 -------~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~----~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~ 510 (976)
....++.+++..-. | -..++.+++.+. .+...|+||||+|.|. ...++.|+.
T Consensus 79 C~~i~~~~~~dlieidaas~~----g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls-----------~~a~naLLK 141 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAASRT----G--VEETKEILDNIQYMPSQGRYKVYLIDEVHMLS-----------KQSFNALLK 141 (546)
T ss_pred HHHHhcCCCCceEEeeccccc----C--HHHHHHHHHHHHhhhhcCCcEEEEEechhhcc-----------HHHHHHHHH
Confidence 01123333332111 1 112333433332 2345699999999883 456778999
Q ss_pred HhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 002045 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (976)
Q Consensus 511 ~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~ 590 (976)
.|+. ..+.+++|++|+.+..+.+.+++ |+ ..++|..++.++...+++..+...++..+...+..|+..+.| +.+
T Consensus 142 ~LEe--pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dlR 215 (546)
T PRK14957 142 TLEE--PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SLR 215 (546)
T ss_pred HHhc--CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 9984 34566677677778888888888 66 789999999999999999998888888999988888888865 566
Q ss_pred HHHHHHHHHH
Q 002045 591 DLKALCTEAA 600 (976)
Q Consensus 591 dI~~l~~~A~ 600 (976)
++.+++..++
T Consensus 216 ~alnlLek~i 225 (546)
T PRK14957 216 DALSLLDQAI 225 (546)
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 168
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=3.2e-13 Score=160.01 Aligned_cols=192 Identities=21% Similarity=0.201 Sum_probs=140.6
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC------------
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ------------ 442 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~------------ 442 (976)
+.+|++|+|++.+++.|..++... ..+..+||+||+|||||++|+++|+.+.....
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 468999999999999999887641 33456899999999999999999999864210
Q ss_pred -------cEEEEEecchhHHhhhHhHHHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHH
Q 002045 443 -------KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLAL 511 (976)
Q Consensus 443 -------~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~----~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ 511 (976)
...++.++++.- .....++.++..+.. +...|+||||+|.|. ....+.|+..
T Consensus 80 ~~i~~~~~~d~~ei~~~~~------~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls-----------~~a~naLLK~ 142 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAASN------TQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS-----------KSAFNAMLKT 142 (527)
T ss_pred HHHhcCCCCceeEeecccc------CCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC-----------HHHHHHHHHH
Confidence 112233332210 112345555555532 234599999999883 3456778898
Q ss_pred hhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHH
Q 002045 512 MDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGAD 591 (976)
Q Consensus 512 ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~d 591 (976)
|+. ....+++|.+|+.+..+.+.+++ |+ ..+.|..++.++....+...+...++.++...+..|+..+.| +.++
T Consensus 143 LEe--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr~ 216 (527)
T PRK14969 143 LEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMRD 216 (527)
T ss_pred HhC--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 885 34567777777778888878887 65 789999999999999999988888888888888888888765 5677
Q ss_pred HHHHHHHHHH
Q 002045 592 LKALCTEAAI 601 (976)
Q Consensus 592 I~~l~~~A~~ 601 (976)
+.+++..+..
T Consensus 217 al~lldqai~ 226 (527)
T PRK14969 217 ALSLLDQAIA 226 (527)
T ss_pred HHHHHHHHHH
Confidence 7777766553
No 169
>PRK04195 replication factor C large subunit; Provisional
Probab=99.50 E-value=2.4e-13 Score=160.74 Aligned_cols=191 Identities=23% Similarity=0.247 Sum_probs=136.4
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecc
Q 002045 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (976)
Q Consensus 372 ~~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~ 451 (976)
.-.+.+|++|+|++.+++.|..++.... .| .++.++||+||||||||++|+++|++++ ..++.+++
T Consensus 7 KyrP~~l~dlvg~~~~~~~l~~~l~~~~--------~g-~~~~~lLL~GppG~GKTtla~ala~el~-----~~~ielna 72 (482)
T PRK04195 7 KYRPKTLSDVVGNEKAKEQLREWIESWL--------KG-KPKKALLLYGPPGVGKTSLAHALANDYG-----WEVIELNA 72 (482)
T ss_pred hcCCCCHHHhcCCHHHHHHHHHHHHHHh--------cC-CCCCeEEEECCCCCCHHHHHHHHHHHcC-----CCEEEEcc
Confidence 3356789999999999999999885411 12 3478999999999999999999999985 45666676
Q ss_pred hhHHhhhHhHHHHHHHHHHHHHHh------cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEe
Q 002045 452 ADVLSKWVGEAERQLKLLFEEAQR------NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIG 525 (976)
Q Consensus 452 ~~l~~~~~g~~~~~l~~~f~~a~~------~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~ 525 (976)
++.... ..+..+...+.. ..+.||||||+|.|.... ....+..|+..++. ....||+
T Consensus 73 sd~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~-------d~~~~~aL~~~l~~----~~~~iIl 135 (482)
T PRK04195 73 SDQRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE-------DRGGARAILELIKK----AKQPIIL 135 (482)
T ss_pred cccccH------HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc-------chhHHHHHHHHHHc----CCCCEEE
Confidence 653321 112222222211 246799999999986421 11234556666662 2334556
Q ss_pred cCCCccccch-hhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 002045 526 ATNRVDAIDG-ALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAA 600 (976)
Q Consensus 526 atn~~~~ld~-aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~ 600 (976)
++|.+..+.. .|++ .+..|.|+.|+..++..+|+..+...++.++.+.+..|+..+.| |++.+++...
T Consensus 136 i~n~~~~~~~k~Lrs---r~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq 204 (482)
T PRK04195 136 TANDPYDPSLRELRN---ACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQ 204 (482)
T ss_pred eccCccccchhhHhc---cceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHH
Confidence 7788777776 5655 45789999999999999999999999999999999999998876 6666665443
No 170
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.50 E-value=2.9e-14 Score=131.45 Aligned_cols=63 Identities=27% Similarity=0.419 Sum_probs=58.6
Q ss_pred ccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 912 YDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 912 ~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
.+..+..|..+++...+|+||++|++||||+||++||.+ |.|+++|.+|+.|||+||+.||++
T Consensus 21 g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~yN~~ 83 (106)
T cd05521 21 GIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARLYNTK 83 (106)
T ss_pred CCCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHcCC
Confidence 345567899999999999999999999999999999998 999999999999999999999985
No 171
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.3e-13 Score=156.28 Aligned_cols=211 Identities=21% Similarity=0.314 Sum_probs=144.4
Q ss_pred ccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEe-cchhHH--
Q 002045 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR-KGADVL-- 455 (976)
Q Consensus 379 ~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~-~~~~l~-- 455 (976)
+|-.|++++|+.|.|++..- .-.|-...+-++|+||||+|||++++.||+.+++.+.++.+--+ +-+++-
T Consensus 411 eDHYgm~dVKeRILEfiAV~-------kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVG-------KLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHH-------hhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 35799999999999988652 11233456678999999999999999999999855422211100 012222
Q ss_pred -hhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCC-------------CCcE
Q 002045 456 -SKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS-------------RGQV 521 (976)
Q Consensus 456 -~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~-------------~~~v 521 (976)
..|+|.....+-+.+......+| +++|||||.|.. +..++. -++||.+||.-.. -.+|
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~--g~qGDP-----asALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS--GHQGDP-----ASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC--CCCCCh-----HHHHHHhcChhhccchhhhccccccchhhe
Confidence 25888888888888888888888 999999999972 222222 1245666653221 2479
Q ss_pred EEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhc-----CC-----CCCCHHHHHHHHHH-cc--CC-
Q 002045 522 VLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK-----WK-----QPPSRELKSELAAS-CV--GY- 587 (976)
Q Consensus 522 ivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~-----~~-----~~~~~~~l~~lA~~-t~--G~- 587 (976)
++|+|+|..+.|+++|+. |+ .+|+++-+..++...|.+.|+-. .+ +.+++..+..|..+ |. |.
T Consensus 556 LFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVR 632 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVR 632 (906)
T ss_pred EEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999 88 78999999999999999877632 22 33445444333322 21 11
Q ss_pred -CHHHHHHHHHHHHHHHHHhh
Q 002045 588 -CGADLKALCTEAAIRAFREK 607 (976)
Q Consensus 588 -s~~dI~~l~~~A~~~a~~~~ 607 (976)
--..|..+|+.+++.-+...
T Consensus 633 nLqk~iekI~Rk~Al~vv~~~ 653 (906)
T KOG2004|consen 633 NLQKQIEKICRKVALKVVEGE 653 (906)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 11356777777776666554
No 172
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.49 E-value=1.2e-12 Score=151.64 Aligned_cols=231 Identities=19% Similarity=0.200 Sum_probs=152.7
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
+....+.++|.++.+++|...+...+. + ..+.+++|+||||||||++++.+++.+......+.++.+++..
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~--------~-~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~ 95 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALR--------G-SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQI 95 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhC--------C-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCc
Confidence 344556799999999999887743111 1 3456799999999999999999999986654456777777743
Q ss_pred H------Hh----hhHh--------HHHHHHHHHHHHHHh-cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhc
Q 002045 454 V------LS----KWVG--------EAERQLKLLFEEAQR-NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDG 514 (976)
Q Consensus 454 l------~~----~~~g--------~~~~~l~~~f~~a~~-~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~ 514 (976)
. +. ...+ .....+..+.+.... ..+.||+|||+|.|.... ....+..|+.+++.
T Consensus 96 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-------~~~~l~~l~~~~~~ 168 (394)
T PRK00411 96 DRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-------GNDVLYSLLRAHEE 168 (394)
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-------CchHHHHHHHhhhc
Confidence 2 11 1111 112223333333332 346799999999986111 12456677776664
Q ss_pred cCCCCcEEEEecCCCcc---ccchhhcCCCCC-ccccCCCCCCHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHccCC-
Q 002045 515 LDSRGQVVLIGATNRVD---AIDGALRRPGRF-DREFNFPLPGCEARAEILDIHTRKW--KQPPSRELKSELAASCVGY- 587 (976)
Q Consensus 515 ~~~~~~vivI~atn~~~---~ld~aL~r~gRf-~~~i~~~~P~~~er~~Il~~~l~~~--~~~~~~~~l~~lA~~t~G~- 587 (976)
... .++.||+++|... .+++.+.+ || ...|.|++++.++..+|++..+... ...+++++++.++..+.+.
T Consensus 169 ~~~-~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~ 245 (394)
T PRK00411 169 YPG-ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREH 245 (394)
T ss_pred cCC-CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhc
Confidence 432 3677888887653 46777766 55 3578999999999999999887542 2346777788888877442
Q ss_pred -CHHHHHHHHHHHHHHHHHhhCCccccCcccccccccceeEeehhhhhccccc
Q 002045 588 -CGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (976)
Q Consensus 588 -s~~dI~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~i 639 (976)
..+.+..+|..|+..|..+.. ..|+.+++..|+..+
T Consensus 246 Gd~r~a~~ll~~a~~~a~~~~~----------------~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 246 GDARVAIDLLRRAGLIAEREGS----------------RKVTEEDVRKAYEKS 282 (394)
T ss_pred CcHHHHHHHHHHHHHHHHHcCC----------------CCcCHHHHHHHHHHH
Confidence 234555777777766665432 247788888777655
No 173
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=6.6e-13 Score=158.86 Aligned_cols=192 Identities=22% Similarity=0.302 Sum_probs=140.9
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCc----------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQK---------- 443 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~---------- 443 (976)
.+.+|++|+|++.+++.|+.++... ..+..+||+||+|||||++|+++|+.+.+....
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 4578999999999999999987641 345668999999999999999999998653210
Q ss_pred ------EEEEEecchhHHhhhHhHHHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhh
Q 002045 444 ------VSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMD 513 (976)
Q Consensus 444 ------~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~----~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld 513 (976)
..++.++++. ..+...++.+.+.+.. +...|+||||+|.|. ...+..|+..|+
T Consensus 81 ~~~~~~~Dvieidaas------n~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT-----------~~A~NALLKtLE 143 (725)
T PRK07133 81 ENVNNSLDIIEMDAAS------NNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS-----------KSAFNALLKTLE 143 (725)
T ss_pred HhhcCCCcEEEEeccc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC-----------HHHHHHHHHHhh
Confidence 1111121110 0112335566555543 334699999999884 346778899998
Q ss_pred ccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHH
Q 002045 514 GLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLK 593 (976)
Q Consensus 514 ~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~ 593 (976)
. ....+++|.+|+.++.|.+.+++ |+ ..+.|.+++.++...+|...+...++..+.+.+..+|..+.| +.+++.
T Consensus 144 E--PP~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~Al 217 (725)
T PRK07133 144 E--PPKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDAL 217 (725)
T ss_pred c--CCCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 5 34567778788888899999988 77 589999999999999999998888888888888888887776 456666
Q ss_pred HHHHHHH
Q 002045 594 ALCTEAA 600 (976)
Q Consensus 594 ~l~~~A~ 600 (976)
+++..++
T Consensus 218 slLekl~ 224 (725)
T PRK07133 218 SIAEQVS 224 (725)
T ss_pred HHHHHHH
Confidence 6655543
No 174
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.48 E-value=3.6e-13 Score=143.61 Aligned_cols=187 Identities=27% Similarity=0.327 Sum_probs=125.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhHhHHHHHHHHHHHHHHh-----cCCcEEEEccccc
Q 002045 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR-----NQPSIIFFDEIDG 488 (976)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~-----~~p~VL~iDEid~ 488 (976)
..++|+||||||||+||+.|+....... ..|+.+++..- ...-++.+|+.+++ .+..||||||||.
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~S--yrfvelSAt~a-------~t~dvR~ife~aq~~~~l~krkTilFiDEiHR 233 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHS--YRFVELSATNA-------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHR 233 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEEecccc-------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhh
Confidence 4699999999999999999998875443 45666665432 23446777777664 3467999999998
Q ss_pred cCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecC--CCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHh
Q 002045 489 LAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT--NRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTR 566 (976)
Q Consensus 489 L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~at--n~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~ 566 (976)
+ ....+..||..++ .+.|++|++| |+...|+.+|++ |+ ++|.+...+.+....||.....
T Consensus 234 F-----------NksQQD~fLP~VE----~G~I~lIGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia 295 (554)
T KOG2028|consen 234 F-----------NKSQQDTFLPHVE----NGDITLIGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIA 295 (554)
T ss_pred h-----------hhhhhhcccceec----cCceEEEecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHH
Confidence 7 3445566776655 5788999877 445569999999 66 6777888888999999987443
Q ss_pred c--------CCC-----CCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCccccCcccccccccceeEeehhhh
Q 002045 567 K--------WKQ-----PPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFI 633 (976)
Q Consensus 567 ~--------~~~-----~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~it~~df~ 633 (976)
. +++ .+++.+++.++..+.|-..+.|..|--.+.+...+... .....++.+|+.
T Consensus 296 ~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~g~-------------~~~~~lSidDvk 362 (554)
T KOG2028|consen 296 SLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRSGQ-------------SSRVLLSIDDVK 362 (554)
T ss_pred hhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCC-------------cccceecHHHHH
Confidence 1 111 24556778899888886655554442222222222211 134457788888
Q ss_pred hcccccc
Q 002045 634 EAMSTIT 640 (976)
Q Consensus 634 ~al~~i~ 640 (976)
+.|....
T Consensus 363 e~lq~s~ 369 (554)
T KOG2028|consen 363 EGLQRSH 369 (554)
T ss_pred HHHhhcc
Confidence 8776554
No 175
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.48 E-value=5.5e-13 Score=152.60 Aligned_cols=222 Identities=21% Similarity=0.266 Sum_probs=149.9
Q ss_pred Cccc-ccChHHHHHHHHHHHHcccCChhHHhhc-----CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEec
Q 002045 377 SFDD-IGGLSEYIDALKEMVFFPLLYPDFFASY-----HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (976)
Q Consensus 377 ~~~~-i~G~~~~k~~l~~~v~~pl~~~~~~~~~-----~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~ 450 (976)
.+++ |+|++.+++.|..++..+.. .+.... ...+..++||+||||||||++|+++|..++ ++|+.++
T Consensus 68 ~L~~~ViGq~~ak~~l~~av~~~~~--r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~-----~pf~~id 140 (412)
T PRK05342 68 HLDQYVIGQERAKKVLSVAVYNHYK--RLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD-----VPFAIAD 140 (412)
T ss_pred HHhhHeeChHHHHHHHHHHHHHHHH--hhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC-----CCceecc
Confidence 3444 89999999999877654321 111110 112457999999999999999999999885 6788888
Q ss_pred chhHHh-hhHhHH-HHHHHHHHHH----HHhcCCcEEEEccccccCCCCCCh---hhhhHHHHHHHHHHHhhccC-----
Q 002045 451 GADVLS-KWVGEA-ERQLKLLFEE----AQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLD----- 516 (976)
Q Consensus 451 ~~~l~~-~~~g~~-~~~l~~~f~~----a~~~~p~VL~iDEid~L~~~r~~~---~~~~~~~~~~~Ll~~ld~~~----- 516 (976)
++.+.. .|+|.. +..+..++.. .....++||||||||.+.+.+.+. .+.....++..||.+|++..
T Consensus 141 ~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~ 220 (412)
T PRK05342 141 ATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPP 220 (412)
T ss_pred hhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCC
Confidence 877653 567764 3334444432 223467899999999998653221 11223468888999998531
Q ss_pred ------CCCcEEEEecCCCcc----------------------------------------------------ccchhhc
Q 002045 517 ------SRGQVVLIGATNRVD----------------------------------------------------AIDGALR 538 (976)
Q Consensus 517 ------~~~~vivI~atn~~~----------------------------------------------------~ld~aL~ 538 (976)
....+++|.|+|... .+.|+|.
T Consensus 221 ~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl 300 (412)
T PRK05342 221 QGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI 300 (412)
T ss_pred CCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh
Confidence 012345566555411 0234444
Q ss_pred CCCCCccccCCCCCCHHHHHHHHHH----HHh---------cCCCCCCHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHH
Q 002045 539 RPGRFDREFNFPLPGCEARAEILDI----HTR---------KWKQPPSRELKSELAAS--CVGYCGADLKALCTEAAIRA 603 (976)
Q Consensus 539 r~gRf~~~i~~~~P~~~er~~Il~~----~l~---------~~~~~~~~~~l~~lA~~--t~G~s~~dI~~l~~~A~~~a 603 (976)
||++.++.|.+.+.+++..|+.. +++ ...+.++++++..|+.. ..++-++.|+.+++......
T Consensus 301 --gRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~ 378 (412)
T PRK05342 301 --GRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDV 378 (412)
T ss_pred --CCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHH
Confidence 49999999999999999999972 322 23456788899999985 45677889999998888777
Q ss_pred HHhh
Q 002045 604 FREK 607 (976)
Q Consensus 604 ~~~~ 607 (976)
+.+.
T Consensus 379 ~~~~ 382 (412)
T PRK05342 379 MFEL 382 (412)
T ss_pred HHhc
Confidence 7654
No 176
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=7.1e-13 Score=158.92 Aligned_cols=192 Identities=20% Similarity=0.200 Sum_probs=142.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (976)
.+.+|++|+|++.+++.|+.++.. + ..+..+|||||+|||||++|+++|+.+....
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDT-----------G-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 356899999999999999998754 1 3456689999999999999999999986431
Q ss_pred -------CcEEEEEecchhHHhhhHhHHHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHH
Q 002045 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (976)
Q Consensus 442 -------~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~----~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~ 510 (976)
....++.+++.... .-..++.+...+.. ....|+||||+|.|. ....+.|+.
T Consensus 79 c~~i~~g~~~d~~eid~~s~~------~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt-----------~~a~naLLk 141 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGASNT------GVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS-----------TNAFNALLK 141 (576)
T ss_pred HHHHhcCCCCCeeeeeccCcc------CHHHHHHHHHHHHhccccCCceEEEEEChhhCC-----------HHHHHHHHH
Confidence 12234444443211 11234445444432 223599999999883 345678999
Q ss_pred HhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 002045 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (976)
Q Consensus 511 ~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~ 590 (976)
.|+. ....+++|.+|+.+..|.+.+++ |+ ..|.|..++..+....+...+...++.++.+.+..|+..+.| +.+
T Consensus 142 ~LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr 215 (576)
T PRK14965 142 TLEE--PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMR 215 (576)
T ss_pred HHHc--CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHH
Confidence 9984 44577888888888999999988 66 689999999999999999999998999999999999988887 556
Q ss_pred HHHHHHHHHH
Q 002045 591 DLKALCTEAA 600 (976)
Q Consensus 591 dI~~l~~~A~ 600 (976)
++.+++..+.
T Consensus 216 ~al~~Ldqli 225 (576)
T PRK14965 216 DSLSTLDQVL 225 (576)
T ss_pred HHHHHHHHHH
Confidence 6666655443
No 177
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=8.1e-13 Score=157.03 Aligned_cols=192 Identities=22% Similarity=0.270 Sum_probs=141.0
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (976)
.+.+|++|+|++.+++.|+.++..- ..+..+|||||+|+|||++|+++|+.+....
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 3568999999999999999887541 3455799999999999999999999986431
Q ss_pred -------CcEEEEEecchhHHhhhHhHHHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHH
Q 002045 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (976)
Q Consensus 442 -------~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~----~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~ 510 (976)
....++.+++..- ..-..++.+.+.+. .....|+||||+|.|. ...++.|+.
T Consensus 79 C~~i~~~~~~dv~~idgas~------~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls-----------~~a~naLLK 141 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGASN------TSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS-----------NSAFNALLK 141 (563)
T ss_pred HHHHHcCCCCCeEEecCccc------CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC-----------HHHHHHHHH
Confidence 1122333333210 01122333333322 2345699999999883 346678888
Q ss_pred HhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 002045 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (976)
Q Consensus 511 ~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~ 590 (976)
.++. ....+++|.+|+.+..|.+++++ |+ ..+.|..++.++..++++..+...+..++.+.+..|+..+.| +.+
T Consensus 142 ~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR 215 (563)
T PRK06647 142 TIEE--PPPYIVFIFATTEVHKLPATIKS--RC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVR 215 (563)
T ss_pred hhcc--CCCCEEEEEecCChHHhHHHHHH--hc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8884 44567777777878889999988 76 468999999999999999999888888999999999988776 667
Q ss_pred HHHHHHHHHH
Q 002045 591 DLKALCTEAA 600 (976)
Q Consensus 591 dI~~l~~~A~ 600 (976)
++.+++..++
T Consensus 216 ~alslLdkli 225 (563)
T PRK06647 216 DAYTLFDQVV 225 (563)
T ss_pred HHHHHHHHHH
Confidence 7777776554
No 178
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.47 E-value=1.8e-12 Score=153.34 Aligned_cols=198 Identities=17% Similarity=0.184 Sum_probs=134.3
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc----C-CcEEEEEecc
Q 002045 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA----G-QKVSFYMRKG 451 (976)
Q Consensus 377 ~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~----~-~~~~~~~~~~ 451 (976)
..+.|+|.++.+++|..++...+. +..+...++|+|+||||||++++.+++++... . ..+.++.++|
T Consensus 753 VPD~LPhREeEIeeLasfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINC 824 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIK--------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEING 824 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeC
Confidence 346799999999999888754221 22333445799999999999999999888532 1 2366788888
Q ss_pred hhHH------hhhH----------h-HHHHHHHHHHHHHHh--cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHh
Q 002045 452 ADVL------SKWV----------G-EAERQLKLLFEEAQR--NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALM 512 (976)
Q Consensus 452 ~~l~------~~~~----------g-~~~~~l~~~f~~a~~--~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~l 512 (976)
..+. .... | .+...+..+|..... ...+||||||||.|... ...++..|+.+.
T Consensus 825 m~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK--------~QDVLYnLFR~~ 896 (1164)
T PTZ00112 825 MNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK--------TQKVLFTLFDWP 896 (1164)
T ss_pred CccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc--------HHHHHHHHHHHh
Confidence 4321 1111 1 123455666665532 23569999999999743 235566666654
Q ss_pred hccCCCCcEEEEecCCC---ccccchhhcCCCCCcc-ccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCC
Q 002045 513 DGLDSRGQVVLIGATNR---VDAIDGALRRPGRFDR-EFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYC 588 (976)
Q Consensus 513 d~~~~~~~vivI~atn~---~~~ld~aL~r~gRf~~-~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s 588 (976)
. .....++||+++|. +..+++.+++ ||.. .|.|++|+.+++.+||+..+......+++++++.+|+.....
T Consensus 897 ~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~- 971 (1164)
T PTZ00112 897 T--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANV- 971 (1164)
T ss_pred h--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhc-
Confidence 4 23457899999986 4457788887 6643 488999999999999999888655567888888888754432
Q ss_pred HHHHHHH
Q 002045 589 GADLKAL 595 (976)
Q Consensus 589 ~~dI~~l 595 (976)
.+|++.+
T Consensus 972 SGDARKA 978 (1164)
T PTZ00112 972 SGDIRKA 978 (1164)
T ss_pred CCHHHHH
Confidence 2344443
No 179
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.46 E-value=2.8e-12 Score=133.60 Aligned_cols=202 Identities=20% Similarity=0.291 Sum_probs=146.1
Q ss_pred CCCcccCCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEE
Q 002045 367 IQPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSF 446 (976)
Q Consensus 367 ~~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~ 446 (976)
+.|+.....+.+++|+|.+.+++.|.+-... |-. | .+.+++||+|+.|||||++++++..++...+ +.+
T Consensus 15 l~~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~-------Fl~-G-~pannvLL~G~rGtGKSSlVkall~~y~~~G--LRl 83 (249)
T PF05673_consen 15 LEPIKHPDPIRLDDLIGIERQKEALIENTEQ-------FLQ-G-LPANNVLLWGARGTGKSSLVKALLNEYADQG--LRL 83 (249)
T ss_pred EEecCCCCCCCHHHhcCHHHHHHHHHHHHHH-------HHc-C-CCCcceEEecCCCCCHHHHHHHHHHHHhhcC--ceE
Confidence 4556666789999999999999999776544 222 2 5789999999999999999999999998877 667
Q ss_pred EEecchhHHhhhHhHHHHHHHHHHHHHHh-cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC--CCCcEEE
Q 002045 447 YMRKGADVLSKWVGEAERQLKLLFEEAQR-NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD--SRGQVVL 523 (976)
Q Consensus 447 ~~~~~~~l~~~~~g~~~~~l~~~f~~a~~-~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~--~~~~viv 523 (976)
+.+...++.. +..+++.++. ..+-|||+|++. +.. ...-...|..+|++-- ...+|+|
T Consensus 84 Iev~k~~L~~---------l~~l~~~l~~~~~kFIlf~DDLs--Fe~--------~d~~yk~LKs~LeGgle~~P~Nvli 144 (249)
T PF05673_consen 84 IEVSKEDLGD---------LPELLDLLRDRPYKFILFCDDLS--FEE--------GDTEYKALKSVLEGGLEARPDNVLI 144 (249)
T ss_pred EEECHHHhcc---------HHHHHHHHhcCCCCEEEEecCCC--CCC--------CcHHHHHHHHHhcCccccCCCcEEE
Confidence 7777766532 3344444442 235699999973 211 1223355667777643 3468999
Q ss_pred EecCCCccccchhhcC---------------------CCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHH----H
Q 002045 524 IGATNRVDAIDGALRR---------------------PGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELK----S 578 (976)
Q Consensus 524 I~atn~~~~ld~aL~r---------------------~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l----~ 578 (976)
.+|+|+-..+...+.. ..||...|.|..|+.++-.+|++.++...++..+.+.+ .
T Consensus 145 yATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al 224 (249)
T PF05673_consen 145 YATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEAL 224 (249)
T ss_pred EEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9999985543322111 13999999999999999999999999999988885443 2
Q ss_pred HHHHHccCCCHHHHHHHHHH
Q 002045 579 ELAASCVGYCGADLKALCTE 598 (976)
Q Consensus 579 ~lA~~t~G~s~~dI~~l~~~ 598 (976)
..|..-.|.||+-..+.+..
T Consensus 225 ~wa~~rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 225 QWALRRGGRSGRTARQFIDD 244 (249)
T ss_pred HHHHHcCCCCHHHHHHHHHH
Confidence 45556677888887777664
No 180
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.46 E-value=1.1e-12 Score=149.97 Aligned_cols=192 Identities=22% Similarity=0.254 Sum_probs=139.4
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC-----------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ----------- 442 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~----------- 442 (976)
.+.+|++|+|++.+++.|...+.. | ..+..+||+||||+|||++|+++++.+.....
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~-----------~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKN-----------G-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 457899999999999999987754 1 34567899999999999999999999853311
Q ss_pred --------cEEEEEecchhHHhhhHhHHHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHH
Q 002045 443 --------KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (976)
Q Consensus 443 --------~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~----~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~ 510 (976)
...++.+++... .....++.+++.+.. ....||+|||+|.+. ...++.|+.
T Consensus 77 c~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~-----------~~~~~~Ll~ 139 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAASN------NGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS-----------KSAFNALLK 139 (355)
T ss_pred HHHHhcCCCCCEEEeecccc------CCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC-----------HHHHHHHHH
Confidence 123344443311 112234555555442 223599999999883 234567888
Q ss_pred HhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 002045 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (976)
Q Consensus 511 ~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~ 590 (976)
.++. ....+++|.+|+.+..+.+++++ |+ ..+.|++|+.++..+++...+...+..++.+.+..++..+.| +.+
T Consensus 140 ~le~--~~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~~ 213 (355)
T TIGR02397 140 TLEE--PPEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SLR 213 (355)
T ss_pred HHhC--CccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-ChH
Confidence 8874 33467777778888888889988 76 578999999999999999999988888898888889988776 556
Q ss_pred HHHHHHHHHH
Q 002045 591 DLKALCTEAA 600 (976)
Q Consensus 591 dI~~l~~~A~ 600 (976)
.+.+.+..+.
T Consensus 214 ~a~~~lekl~ 223 (355)
T TIGR02397 214 DALSLLDQLI 223 (355)
T ss_pred HHHHHHHHHH
Confidence 6666655544
No 181
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=1.4e-12 Score=151.89 Aligned_cols=193 Identities=21% Similarity=0.261 Sum_probs=136.3
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC-------------
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------- 441 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------- 441 (976)
+.+|++|+|++.++..|+.++.. + ..+..+|||||||+|||++|+++|+.+....
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~-----------~-~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRF-----------N-RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------C-CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 46899999999999999888764 1 3456799999999999999999999986431
Q ss_pred -------CcEEEEEecchhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhc
Q 002045 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDG 514 (976)
Q Consensus 442 -------~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~ 514 (976)
....++.+++....+ +.........+..........||||||+|.|. ...++.|+..|+.
T Consensus 81 C~~i~~~~~~d~~~i~g~~~~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt-----------~~~~n~LLk~lEe 147 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASHRG--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLT-----------KEAFNSLLKTLEE 147 (451)
T ss_pred HHHHhcCCCCceEEeeccccCC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC-----------HHHHHHHHHHhhc
Confidence 112344444422110 11111111111111122446799999999884 3356788899885
Q ss_pred cCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHH
Q 002045 515 LDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKA 594 (976)
Q Consensus 515 ~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~ 594 (976)
. .+.+++|++|+.+..|.+++++ |+ ..++|..++.++...++...+...+..++.+.+..|+..+.| +.+.+.+
T Consensus 148 p--~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dlr~a~~ 221 (451)
T PRK06305 148 P--PQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-SLRDAES 221 (451)
T ss_pred C--CCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 3 4466777777888889899988 66 579999999999999999998888888899888899988876 4455555
Q ss_pred HHHH
Q 002045 595 LCTE 598 (976)
Q Consensus 595 l~~~ 598 (976)
++..
T Consensus 222 ~Lek 225 (451)
T PRK06305 222 LYDY 225 (451)
T ss_pred HHHH
Confidence 5444
No 182
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=1.4e-12 Score=152.47 Aligned_cols=193 Identities=21% Similarity=0.175 Sum_probs=142.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (976)
.+.+|++|+|++.+++.|..++.. | ..+..+|||||+|+|||++|+++|+.+....
T Consensus 9 RP~~fdeiiGqe~v~~~L~~~I~~-----------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~ 76 (535)
T PRK08451 9 RPKHFDELIGQESVSKTLSLALDN-----------N-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQ 76 (535)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 357899999999999999988754 1 3445679999999999999999999985321
Q ss_pred -------CcEEEEEecchhHHhhhHhHHHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHH
Q 002045 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (976)
Q Consensus 442 -------~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~----~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~ 510 (976)
.+..++.++++.-. .-..++.+...+.. ....|+||||+|.|. ...++.||.
T Consensus 77 C~~~~~~~h~dv~eldaas~~------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt-----------~~A~NALLK 139 (535)
T PRK08451 77 CQSALENRHIDIIEMDAASNR------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT-----------KEAFNALLK 139 (535)
T ss_pred HHHHhhcCCCeEEEecccccc------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-----------HHHHHHHHH
Confidence 12234444433210 11234444443321 223499999999883 456778899
Q ss_pred HhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 002045 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (976)
Q Consensus 511 ~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~ 590 (976)
.|+.. ...+++|.+|+.+..|.+++++ |+ ..++|.+++.++....+...+...+..++.+.+..|+..+.| +.+
T Consensus 140 ~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR 213 (535)
T PRK08451 140 TLEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SLR 213 (535)
T ss_pred HHhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 99864 3456666667777889999999 75 689999999999999999999988888999999999988776 777
Q ss_pred HHHHHHHHHHH
Q 002045 591 DLKALCTEAAI 601 (976)
Q Consensus 591 dI~~l~~~A~~ 601 (976)
++.+++..+..
T Consensus 214 ~alnlLdqai~ 224 (535)
T PRK08451 214 DTLTLLDQAII 224 (535)
T ss_pred HHHHHHHHHHH
Confidence 77777776654
No 183
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.46 E-value=7.4e-14 Score=128.25 Aligned_cols=73 Identities=33% Similarity=0.541 Sum_probs=66.7
Q ss_pred hhhhcccccc--ccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 904 RDVCNRMLYD--KRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 904 ~~il~~l~~~--~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
..++..+..+ +.+++|..||++..+|+|+.+|++||||.+|++||.++.|.|+.+|.+|+.|||.||..||.+
T Consensus 6 ~~i~~~l~~~~~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~ 80 (99)
T cd04369 6 RSLLDALKKLKRDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGP 80 (99)
T ss_pred HHHHHHHHhhcccccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4455555555 889999999999999999999999999999999999999999999999999999999999974
No 184
>PRK05642 DNA replication initiation factor; Validated
Probab=99.46 E-value=5e-12 Score=135.21 Aligned_cols=204 Identities=15% Similarity=0.161 Sum_probs=135.9
Q ss_pred CcccCCCCCccccc-ChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEE
Q 002045 369 PLQVDESVSFDDIG-GLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (976)
Q Consensus 369 ~~~~~~~~~~~~i~-G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (976)
++...+..+|++++ |... .+..++..+. ...+--+..+++||||+|||||+|++++|+++...+..+ +
T Consensus 9 ~~~~~~~~tfdnF~~~~~~---~a~~~~~~~~------~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v--~ 77 (234)
T PRK05642 9 GVRLRDDATFANYYPGANA---AALGYVERLC------EADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPA--V 77 (234)
T ss_pred CCCCCCcccccccCcCChH---HHHHHHHHHh------hccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcE--E
Confidence 45566788999965 4322 2233322110 011111236799999999999999999999887665444 4
Q ss_pred EecchhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecC
Q 002045 448 MRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (976)
Q Consensus 448 ~~~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~at 527 (976)
.++..+++... ..+++.... ..+|+|||++.+.+. ......|+.+++.+...+..+||+++
T Consensus 78 y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~---------~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 78 YLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGK---------ADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred EeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCC---------hHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 45566665421 122222322 249999999987532 12234466666666666777888877
Q ss_pred CCccc---cchhhcCCCCC--ccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Q 002045 528 NRVDA---IDGALRRPGRF--DREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIR 602 (976)
Q Consensus 528 n~~~~---ld~aL~r~gRf--~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~ 602 (976)
..|.. +.+.|++ || ..++.+..|+.+++..|++..+...++.+++++++.|+.+..+ +.+.+..++......
T Consensus 139 ~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~ 215 (234)
T PRK05642 139 KSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQA 215 (234)
T ss_pred CCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 66654 3688888 77 4677789999999999999777777888999999999998886 566777776665544
Q ss_pred HHH
Q 002045 603 AFR 605 (976)
Q Consensus 603 a~~ 605 (976)
++.
T Consensus 216 ~l~ 218 (234)
T PRK05642 216 SLQ 218 (234)
T ss_pred HHH
Confidence 444
No 185
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=1.4e-12 Score=152.87 Aligned_cols=192 Identities=22% Similarity=0.226 Sum_probs=136.7
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC-----------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ----------- 442 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~----------- 442 (976)
.+.+|++++|++.++..|+.++.. -..+..+|||||+|+|||++|+++|+.+.....
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n 78 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN 78 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH
Confidence 456899999999999999888754 133456789999999999999999999864210
Q ss_pred --------cEEEEEecchhHHhhhHhHHHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHH
Q 002045 443 --------KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (976)
Q Consensus 443 --------~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~----~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~ 510 (976)
...++.++++.- ..-..++.+.+.+.. +...|+||||+|.|. ....+.|+.
T Consensus 79 c~~i~~g~~~d~~eidaas~------~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt-----------~~a~naLLk 141 (486)
T PRK14953 79 CVEIDKGSFPDLIEIDAASN------RGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT-----------KEAFNALLK 141 (486)
T ss_pred HHHHhcCCCCcEEEEeCccC------CCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC-----------HHHHHHHHH
Confidence 011222222110 011223444444332 335699999999883 335567888
Q ss_pred HhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 002045 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (976)
Q Consensus 511 ~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~ 590 (976)
.++.. ...+++|.+|+.++.+.+++.+ |+ ..+.|++++.+++..++...+...++..+.+.+..|+..+.| +.+
T Consensus 142 ~LEep--p~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr 215 (486)
T PRK14953 142 TLEEP--PPRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMR 215 (486)
T ss_pred HHhcC--CCCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 88843 3456666667777888888888 66 478999999999999999999998988999998989988775 456
Q ss_pred HHHHHHHHHH
Q 002045 591 DLKALCTEAA 600 (976)
Q Consensus 591 dI~~l~~~A~ 600 (976)
++.+++..+.
T Consensus 216 ~al~~Ldkl~ 225 (486)
T PRK14953 216 DAASLLDQAS 225 (486)
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 186
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.45 E-value=1.8e-12 Score=150.35 Aligned_cols=207 Identities=16% Similarity=0.176 Sum_probs=135.3
Q ss_pred cCCCCCcccc-cChHHHH--HHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEE
Q 002045 372 VDESVSFDDI-GGLSEYI--DALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM 448 (976)
Q Consensus 372 ~~~~~~~~~i-~G~~~~k--~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~ 448 (976)
.++..+|+++ +|..+.. ..+.++...+- ..+-...++++||||+|+|||+|++++++.+...+.. ++.
T Consensus 104 l~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~-------~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~--v~y 174 (445)
T PRK12422 104 LDPLMTFANFLVTPENDLPHRILQEFTKVSE-------QGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGK--ILY 174 (445)
T ss_pred CCccccccceeeCCcHHHHHHHHHHHHhccc-------cccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCC--EEE
Confidence 4578899995 4655442 34444433210 0111233679999999999999999999998766544 455
Q ss_pred ecchhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCC
Q 002045 449 RKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (976)
Q Consensus 449 ~~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn 528 (976)
+++..+...+.......-...|.... ....||+|||++.+.+.. .....|+..++.+...+..+||+++.
T Consensus 175 i~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~---------~~qeelf~l~N~l~~~~k~IIlts~~ 244 (445)
T PRK12422 175 VRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG---------ATQEEFFHTFNSLHTEGKLIVISSTC 244 (445)
T ss_pred eeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh---------hhHHHHHHHHHHHHHCCCcEEEecCC
Confidence 66666655443332211112233322 346799999999886421 12233444444333345566666666
Q ss_pred Cccc---cchhhcCCCCCc--cccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 002045 529 RVDA---IDGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAA 600 (976)
Q Consensus 529 ~~~~---ld~aL~r~gRf~--~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~ 600 (976)
.|.. +++.|.+ ||. ..+.+++|+.+++..||+..+...++.+++++++.||....+ +.+.|..++...+
T Consensus 245 ~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~ 318 (445)
T PRK12422 245 APQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLA 318 (445)
T ss_pred CHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 5554 6788888 884 788899999999999999999998999999999999998775 4455555555543
No 187
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.45 E-value=1.6e-12 Score=158.20 Aligned_cols=183 Identities=23% Similarity=0.313 Sum_probs=127.6
Q ss_pred CCCCcccccChHHHHH---HHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEec
Q 002045 374 ESVSFDDIGGLSEYID---ALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~---~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~ 450 (976)
.+.+|++++|++.++. .|+.++.. ....++||+||||||||++|+++|+.+. ..|+.++
T Consensus 23 RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~-----~~f~~ln 84 (725)
T PRK13341 23 RPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTR-----AHFSSLN 84 (725)
T ss_pred CCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhc-----Ccceeeh
Confidence 3578999999999885 45554432 2335899999999999999999999875 4455555
Q ss_pred chhHHhhhHhHHHHHHHHHHHHHH-----hcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEe
Q 002045 451 GADVLSKWVGEAERQLKLLFEEAQ-----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIG 525 (976)
Q Consensus 451 ~~~l~~~~~g~~~~~l~~~f~~a~-----~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~ 525 (976)
+...- +. .++.++..+. .....||||||||.|. ...+..|+..++ .+.+++|+
T Consensus 85 a~~~~---i~----dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln-----------~~qQdaLL~~lE----~g~IiLI~ 142 (725)
T PRK13341 85 AVLAG---VK----DLRAEVDRAKERLERHGKRTILFIDEVHRFN-----------KAQQDALLPWVE----NGTITLIG 142 (725)
T ss_pred hhhhh---hH----HHHHHHHHHHHHhhhcCCceEEEEeChhhCC-----------HHHHHHHHHHhc----CceEEEEE
Confidence 53211 11 1222222221 1345699999999884 233455666665 35677777
Q ss_pred cCCC--ccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHh-------cCCCCCCHHHHHHHHHHccCCCHHHHHHHH
Q 002045 526 ATNR--VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTR-------KWKQPPSRELKSELAASCVGYCGADLKALC 596 (976)
Q Consensus 526 atn~--~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~-------~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~ 596 (976)
+|+. ...+++++++ |+ .++.|++++.+++..|++..+. ...+.++++.++.|+..+.| ..+.+.+++
T Consensus 143 aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~L 218 (725)
T PRK13341 143 ATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNAL 218 (725)
T ss_pred ecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHH
Confidence 6533 3468899988 64 5799999999999999998887 44567889999999998865 566666776
Q ss_pred HHHH
Q 002045 597 TEAA 600 (976)
Q Consensus 597 ~~A~ 600 (976)
..++
T Consensus 219 e~a~ 222 (725)
T PRK13341 219 ELAV 222 (725)
T ss_pred HHHH
Confidence 6655
No 188
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=1.7e-12 Score=154.96 Aligned_cols=192 Identities=21% Similarity=0.225 Sum_probs=141.4
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCc----------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQK---------- 443 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~---------- 443 (976)
.+.+|++|+|++.+++.|..++.. | +.+..+||+||+|+|||++|+++|+.+......
T Consensus 19 RP~~f~dliGq~~~v~~L~~~~~~-----------g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c 86 (598)
T PRK09111 19 RPQTFDDLIGQEAMVRTLTNAFET-----------G-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC 86 (598)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC
Confidence 356899999999999999998754 1 456789999999999999999999998654211
Q ss_pred --------------EEEEEecchhHHhhhHhHHHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCChhhhhHHHHH
Q 002045 444 --------------VSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIV 505 (976)
Q Consensus 444 --------------~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~----~~p~VL~iDEid~L~~~r~~~~~~~~~~~~ 505 (976)
..++.+++... . .-..++.+++.+.. ....||||||+|.|. ....
T Consensus 87 g~c~~C~~i~~g~h~Dv~e~~a~s~----~--gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls-----------~~a~ 149 (598)
T PRK09111 87 GVGEHCQAIMEGRHVDVLEMDAASH----T--GVDDIREIIESVRYRPVSARYKVYIIDEVHMLS-----------TAAF 149 (598)
T ss_pred cccHHHHHHhcCCCCceEEeccccc----C--CHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC-----------HHHH
Confidence 11222222110 0 12345555555542 234699999999883 3456
Q ss_pred HHHHHHhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcc
Q 002045 506 STLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCV 585 (976)
Q Consensus 506 ~~Ll~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~ 585 (976)
+.|+..|+.. ...+++|.+|+.+..+.+.+++ |+ ..|.|..++.++...+|...+...+..++.+.+..|+..+.
T Consensus 150 naLLKtLEeP--p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~ 224 (598)
T PRK09111 150 NALLKTLEEP--PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAE 224 (598)
T ss_pred HHHHHHHHhC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 7888888853 3456676677777788888888 76 67999999999999999999999999999998888888887
Q ss_pred CCCHHHHHHHHHHHH
Q 002045 586 GYCGADLKALCTEAA 600 (976)
Q Consensus 586 G~s~~dI~~l~~~A~ 600 (976)
| +.+++.+++..++
T Consensus 225 G-dlr~al~~Ldkli 238 (598)
T PRK09111 225 G-SVRDGLSLLDQAI 238 (598)
T ss_pred C-CHHHHHHHHHHHH
Confidence 6 5677777666554
No 189
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=1.7e-12 Score=148.79 Aligned_cols=192 Identities=20% Similarity=0.260 Sum_probs=137.4
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC-------cEEE
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ-------KVSF 446 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~-------~~~~ 446 (976)
.+.+|++|+|++.+++.+...+... ..+.++|||||||+|||++|+++|+.+...+. ...+
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 4578999999999999998887641 34578999999999999999999999865321 2223
Q ss_pred EEecchhHHhhhHhHHHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEE
Q 002045 447 YMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVV 522 (976)
Q Consensus 447 ~~~~~~~l~~~~~g~~~~~l~~~f~~a~~----~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vi 522 (976)
+.++.... .....++.+++.+.. ..+.||||||+|.+. ...+..|+..++. .....+
T Consensus 80 ~~l~~~~~------~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~-----------~~~~~~ll~~le~--~~~~~~ 140 (367)
T PRK14970 80 FELDAASN------NSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS-----------SAAFNAFLKTLEE--PPAHAI 140 (367)
T ss_pred EEeccccC------CCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC-----------HHHHHHHHHHHhC--CCCceE
Confidence 33332211 112344555554432 234699999999874 2345677777774 233456
Q ss_pred EEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 002045 523 LIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAA 600 (976)
Q Consensus 523 vI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~ 600 (976)
+|.+|+.+..+.+++.+ |+ ..+.|+.|+.++...++...+...+..++.+.++.|+..+.| +.+.+.+.+....
T Consensus 141 ~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~ 214 (367)
T PRK14970 141 FILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVV 214 (367)
T ss_pred EEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 66667777888888887 66 468999999999999999999988888999999999988765 5555555555443
No 190
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.45 E-value=6.3e-13 Score=148.63 Aligned_cols=127 Identities=19% Similarity=0.204 Sum_probs=87.1
Q ss_pred CcEEEEccccccCCCCCC-hhhhhHHHHHHHHHHHhhccC--------CCCcEEEEecCC----CccccchhhcCCCCCc
Q 002045 478 PSIIFFDEIDGLAPVRSS-KQEQIHNSIVSTLLALMDGLD--------SRGQVVLIGATN----RVDAIDGALRRPGRFD 544 (976)
Q Consensus 478 p~VL~iDEid~L~~~r~~-~~~~~~~~~~~~Ll~~ld~~~--------~~~~vivI~atn----~~~~ld~aL~r~gRf~ 544 (976)
..||||||||.|+.+..+ ..+-....++..||.++++.. .+.++++|++.- .|..|-|.|.- ||+
T Consensus 248 ~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~P 325 (441)
T TIGR00390 248 SGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFP 325 (441)
T ss_pred CCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccc
Confidence 459999999999966522 222334568899999998743 245778887653 35556677754 999
Q ss_pred cccCCCCCCHHHHHHHHH----HHH-------hcC--CCCCCHHHHHHHHHHc-------cCCCHHHHHHHHHHHHHHHH
Q 002045 545 REFNFPLPGCEARAEILD----IHT-------RKW--KQPPSRELKSELAASC-------VGYCGADLKALCTEAAIRAF 604 (976)
Q Consensus 545 ~~i~~~~P~~~er~~Il~----~~l-------~~~--~~~~~~~~l~~lA~~t-------~G~s~~dI~~l~~~A~~~a~ 604 (976)
.++.+..++.++...||. .++ ... .+.++++.+..||... .+..++-|..++........
T Consensus 326 i~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~ 405 (441)
T TIGR00390 326 IRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDIS 405 (441)
T ss_pred eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHH
Confidence 999999999999999992 222 222 3455777777777665 35556677777776665554
Q ss_pred Hh
Q 002045 605 RE 606 (976)
Q Consensus 605 ~~ 606 (976)
..
T Consensus 406 fe 407 (441)
T TIGR00390 406 FE 407 (441)
T ss_pred hc
Confidence 43
No 191
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.44 E-value=2.6e-12 Score=144.35 Aligned_cols=180 Identities=20% Similarity=0.238 Sum_probs=123.0
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecc
Q 002045 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (976)
Q Consensus 372 ~~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~ 451 (976)
...+.+|++++|++.+++.|+.++.. | ..+..+||+||||+|||++|+++|+.++ ..++.+++
T Consensus 14 kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~-----~~~~~i~~ 76 (316)
T PHA02544 14 KYRPSTIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVG-----AEVLFVNG 76 (316)
T ss_pred ccCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhC-----ccceEecc
Confidence 33567899999999999999888753 1 3345666799999999999999999874 34555666
Q ss_pred hhHHhhhHhHHHHHHHHHHHHHH-hcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCc
Q 002045 452 ADVLSKWVGEAERQLKLLFEEAQ-RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (976)
Q Consensus 452 ~~l~~~~~g~~~~~l~~~f~~a~-~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~ 530 (976)
.+ .. +......+..+..... ...+.||||||+|.+.. ......|...++.. ..++.||++||.+
T Consensus 77 ~~--~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~----------~~~~~~L~~~le~~--~~~~~~Ilt~n~~ 141 (316)
T PHA02544 77 SD--CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL----------ADAQRHLRSFMEAY--SKNCSFIITANNK 141 (316)
T ss_pred Cc--cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC----------HHHHHHHHHHHHhc--CCCceEEEEcCCh
Confidence 54 11 2222222222222211 13467999999998731 12334455556643 3456777888988
Q ss_pred cccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHh-------cCCCCCCHHHHHHHHHHccC
Q 002045 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTR-------KWKQPPSRELKSELAASCVG 586 (976)
Q Consensus 531 ~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~-------~~~~~~~~~~l~~lA~~t~G 586 (976)
..+.+++++ || ..+.|+.|+.+++.+|++.++. ..+..++.+.+..++....|
T Consensus 142 ~~l~~~l~s--R~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~ 201 (316)
T PHA02544 142 NGIIEPLRS--RC-RVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFP 201 (316)
T ss_pred hhchHHHHh--hc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC
Confidence 899999998 88 4789999999999888765432 34667777777888876665
No 192
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.43 E-value=7.1e-13 Score=148.28 Aligned_cols=218 Identities=21% Similarity=0.245 Sum_probs=147.1
Q ss_pred ccChHHHHHHHHHHHHcccCChhHHhhcC-CCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHh-hh
Q 002045 381 IGGLSEYIDALKEMVFFPLLYPDFFASYH-ITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS-KW 458 (976)
Q Consensus 381 i~G~~~~k~~l~~~v~~pl~~~~~~~~~~-~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~-~~ 458 (976)
|+|++++|..|..++........+..... -..+.+|||+||||||||++|++||+.++ .+|+.++++.+.. .|
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~-----~~fi~vD~t~f~e~Gy 91 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAN-----APFIKVEATKFTEVGY 91 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhC-----ChheeecchhhccCCc
Confidence 89999999999888754221111111111 01358999999999999999999999985 6777777776664 46
Q ss_pred Hh-HHHHHHHHHHHHHH---------------------------------------------------------------
Q 002045 459 VG-EAERQLKLLFEEAQ--------------------------------------------------------------- 474 (976)
Q Consensus 459 ~g-~~~~~l~~~f~~a~--------------------------------------------------------------- 474 (976)
+| ..+..++.+|..|.
T Consensus 92 vG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~ 171 (443)
T PRK05201 92 VGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDK 171 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCc
Confidence 66 34444444444440
Q ss_pred ---------------------------------------------------------------------------hcCCc
Q 002045 475 ---------------------------------------------------------------------------RNQPS 479 (976)
Q Consensus 475 ---------------------------------------------------------------------------~~~p~ 479 (976)
..+..
T Consensus 172 ~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~G 251 (443)
T PRK05201 172 EIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNG 251 (443)
T ss_pred EEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCC
Confidence 01235
Q ss_pred EEEEccccccCCCCCC-hhhhhHHHHHHHHHHHhhccC--------CCCcEEEEecCC----CccccchhhcCCCCCccc
Q 002045 480 IIFFDEIDGLAPVRSS-KQEQIHNSIVSTLLALMDGLD--------SRGQVVLIGATN----RVDAIDGALRRPGRFDRE 546 (976)
Q Consensus 480 VL~iDEid~L~~~r~~-~~~~~~~~~~~~Ll~~ld~~~--------~~~~vivI~atn----~~~~ld~aL~r~gRf~~~ 546 (976)
||||||||.|+.+.++ ..+-....++..||.++++.. .+.++++|++.- .|..|-|.|.- ||+.+
T Consensus 252 IVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~ 329 (443)
T PRK05201 252 IVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIR 329 (443)
T ss_pred EEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceE
Confidence 9999999999976532 223334568899999998742 346778887653 35556677765 99999
Q ss_pred cCCCCCCHHHHHHHHH----HHHhc---------CCCCCCHHHHHHHHHHcc-------CCCHHHHHHHHHHHHHHHHH
Q 002045 547 FNFPLPGCEARAEILD----IHTRK---------WKQPPSRELKSELAASCV-------GYCGADLKALCTEAAIRAFR 605 (976)
Q Consensus 547 i~~~~P~~~er~~Il~----~~l~~---------~~~~~~~~~l~~lA~~t~-------G~s~~dI~~l~~~A~~~a~~ 605 (976)
+.+..++.++...||. .++++ ..+.++++.+..||.... +.-++-|..++.........
T Consensus 330 v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~F 408 (443)
T PRK05201 330 VELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDISF 408 (443)
T ss_pred EECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhc
Confidence 9999999999999993 22222 234566777777776553 55556677777666554443
No 193
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.43 E-value=4.4e-12 Score=142.60 Aligned_cols=193 Identities=23% Similarity=0.205 Sum_probs=132.3
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
.+.+|++++|++++++.|..++.. ....++||+||||||||++++++++.+...++...++.+++++
T Consensus 12 rP~~~~~~~g~~~~~~~l~~~i~~-------------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~ 78 (319)
T PRK00440 12 RPRTLDEIVGQEEIVERLKSYVKE-------------KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASD 78 (319)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccc
Confidence 457899999999999999988753 1223699999999999999999999986655555566665443
Q ss_pred HHhhhHhHHHHHHHHHHHHH-Hh-cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCcc
Q 002045 454 VLSKWVGEAERQLKLLFEEA-QR-NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVD 531 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a-~~-~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~ 531 (976)
.... ......+..+.... .. ..+.||+|||+|.|. ......|+..++.... .+.+|.++|.+.
T Consensus 79 ~~~~--~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~-----------~~~~~~L~~~le~~~~--~~~lIl~~~~~~ 143 (319)
T PRK00440 79 ERGI--DVIRNKIKEFARTAPVGGAPFKIIFLDEADNLT-----------SDAQQALRRTMEMYSQ--NTRFILSCNYSS 143 (319)
T ss_pred ccch--HHHHHHHHHHHhcCCCCCCCceEEEEeCcccCC-----------HHHHHHHHHHHhcCCC--CCeEEEEeCCcc
Confidence 2210 00111111111111 01 224599999999884 2234567777765433 345555667767
Q ss_pred ccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHH
Q 002045 532 AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTE 598 (976)
Q Consensus 532 ~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~ 598 (976)
.+.+++.+ |+. .+.|++++.++...+++..+...+..++.+.+..++..+.| +.+.+.+.+..
T Consensus 144 ~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~ 206 (319)
T PRK00440 144 KIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQA 206 (319)
T ss_pred ccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 77777877 664 68999999999999999999998988999999999988776 34444444443
No 194
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.43 E-value=7.7e-13 Score=152.69 Aligned_cols=199 Identities=22% Similarity=0.235 Sum_probs=152.8
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
.+.+|++++|++.+...|..++..- +...+.||+||-|||||++||.+|+.+++......-....|..
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred CcccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 4568999999999999999988651 4456799999999999999999999997654211111111211
Q ss_pred HHhhhHh-------------HHHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC
Q 002045 454 VLSKWVG-------------EAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD 516 (976)
Q Consensus 454 l~~~~~g-------------~~~~~l~~~f~~a~----~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~ 516 (976)
+.+-..| .+-..++.+.+.+. .++.-|++|||+|.| +....+.||..++ .
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML-----------S~~afNALLKTLE--E 145 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML-----------SKQAFNALLKTLE--E 145 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh-----------hHHHHHHHhcccc--c
Confidence 1111011 11234455555544 344569999999998 5678888999998 4
Q ss_pred CCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHH
Q 002045 517 SRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALC 596 (976)
Q Consensus 517 ~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~ 596 (976)
...+|++|.+|..+..+++.+++ |+ ..+.|...+.++....|...+.+.++..+++.+..+|....| +.+|..+++
T Consensus 146 PP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalslL 221 (515)
T COG2812 146 PPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSLL 221 (515)
T ss_pred CccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHHH
Confidence 56689999999999999999999 76 679999999999999999999999999999999999998887 678888888
Q ss_pred HHHHH
Q 002045 597 TEAAI 601 (976)
Q Consensus 597 ~~A~~ 601 (976)
..+..
T Consensus 222 Dq~i~ 226 (515)
T COG2812 222 DQAIA 226 (515)
T ss_pred HHHHH
Confidence 87764
No 195
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.43 E-value=1.8e-12 Score=147.51 Aligned_cols=222 Identities=20% Similarity=0.265 Sum_probs=149.5
Q ss_pred Cccc-ccChHHHHHHHHHHHHcccCChhHHh--hcC----C-CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEE
Q 002045 377 SFDD-IGGLSEYIDALKEMVFFPLLYPDFFA--SYH----I-TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM 448 (976)
Q Consensus 377 ~~~~-i~G~~~~k~~l~~~v~~pl~~~~~~~--~~~----~-~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~ 448 (976)
.++. |+|++++++.|..++..... .+.. ... + ....+|||+||||||||++|+++|..++ ++|..
T Consensus 74 ~L~~~ViGQe~A~~~l~~av~~h~~--~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~-----~pf~~ 146 (413)
T TIGR00382 74 HLDEYVIGQEQAKKVLSVAVYNHYK--RLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN-----VPFAI 146 (413)
T ss_pred HhcceecCHHHHHHHHHHHHHHHHh--hhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC-----CCeEE
Confidence 3444 79999999999877743211 1111 000 0 1246899999999999999999998885 67777
Q ss_pred ecchhHHh-hhHhHH-HHHHHHHHHHH----HhcCCcEEEEccccccCCCCCChh---hhhHHHHHHHHHHHhhccCC--
Q 002045 449 RKGADVLS-KWVGEA-ERQLKLLFEEA----QRNQPSIIFFDEIDGLAPVRSSKQ---EQIHNSIVSTLLALMDGLDS-- 517 (976)
Q Consensus 449 ~~~~~l~~-~~~g~~-~~~l~~~f~~a----~~~~p~VL~iDEid~L~~~r~~~~---~~~~~~~~~~Ll~~ld~~~~-- 517 (976)
+++..+.. .|+|.. +..+..++..+ ....++||||||||.+.+.+.+.. +.....++..||..|++...
T Consensus 147 ~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v 226 (413)
T TIGR00382 147 ADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANV 226 (413)
T ss_pred echhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceec
Confidence 77776542 467763 44444444322 234577999999999987532211 11223678889999876431
Q ss_pred ---------CCcEEEEecCCCcc--------------------------------------------------ccchhhc
Q 002045 518 ---------RGQVVLIGATNRVD--------------------------------------------------AIDGALR 538 (976)
Q Consensus 518 ---------~~~vivI~atn~~~--------------------------------------------------~ld~aL~ 538 (976)
..++++|.|+|-.. .+.|+|+
T Consensus 227 ~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl 306 (413)
T TIGR00382 227 PPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI 306 (413)
T ss_pred ccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh
Confidence 12467777777510 0224444
Q ss_pred CCCCCccccCCCCCCHHHHHHHHHHH----Hh---------cCCCCCCHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHH
Q 002045 539 RPGRFDREFNFPLPGCEARAEILDIH----TR---------KWKQPPSRELKSELAAS--CVGYCGADLKALCTEAAIRA 603 (976)
Q Consensus 539 r~gRf~~~i~~~~P~~~er~~Il~~~----l~---------~~~~~~~~~~l~~lA~~--t~G~s~~dI~~l~~~A~~~a 603 (976)
. |++.++.|.+.+.+++.+|+... ++ +..+.+++++++.||.. ...+.++.|+.+++......
T Consensus 307 g--Rld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~ 384 (413)
T TIGR00382 307 G--RLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDV 384 (413)
T ss_pred C--CCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHH
Confidence 4 99999999999999999998752 22 23456688888999986 45677889999999888777
Q ss_pred HHhh
Q 002045 604 FREK 607 (976)
Q Consensus 604 ~~~~ 607 (976)
+.+.
T Consensus 385 m~e~ 388 (413)
T TIGR00382 385 MFDL 388 (413)
T ss_pred HhhC
Confidence 7654
No 196
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=3.1e-12 Score=147.49 Aligned_cols=192 Identities=17% Similarity=0.197 Sum_probs=134.8
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC-----------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ----------- 442 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~----------- 442 (976)
.+.+|++|+|++.+++.|+.++.. | ..+..+||+||||||||++|+++|+.+.....
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~ 78 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT 78 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC
Confidence 356899999999999999887754 1 34567999999999999999999999965210
Q ss_pred ----------------cEEEEEecchhHHhhhHhHHHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCChhhhhHH
Q 002045 443 ----------------KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHN 502 (976)
Q Consensus 443 ----------------~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~----~~p~VL~iDEid~L~~~r~~~~~~~~~ 502 (976)
..+++.+++.... ....++.+.+.+.. ....||||||+|.|. .
T Consensus 79 ~~c~~c~~c~~~~~~~~~n~~~~~~~~~~------~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~-----------~ 141 (397)
T PRK14955 79 EPCGECESCRDFDAGTSLNISEFDAASNN------SVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS-----------I 141 (397)
T ss_pred CCCCCCHHHHHHhcCCCCCeEeecccccC------CHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC-----------H
Confidence 0122222221110 12234444444421 223599999999884 2
Q ss_pred HHHHHHHHHhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002045 503 SIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAA 582 (976)
Q Consensus 503 ~~~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~ 582 (976)
..++.|+..++.. ...+++|.+|+.+..+.+.+.+ |+ ..++|..++.++...++...++..+..++.+.++.|+.
T Consensus 142 ~~~~~LLk~LEep--~~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~ 216 (397)
T PRK14955 142 AAFNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGR 216 (397)
T ss_pred HHHHHHHHHHhcC--CCCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3456678888743 3455666666667788888887 55 57999999999999999999988888899999999998
Q ss_pred HccCCCHHHHHHHHHHHH
Q 002045 583 SCVGYCGADLKALCTEAA 600 (976)
Q Consensus 583 ~t~G~s~~dI~~l~~~A~ 600 (976)
.+.| +.+.+.+.+..+.
T Consensus 217 ~s~g-~lr~a~~~L~kl~ 233 (397)
T PRK14955 217 KAQG-SMRDAQSILDQVI 233 (397)
T ss_pred HcCC-CHHHHHHHHHHHH
Confidence 8876 5555666555543
No 197
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.41 E-value=1.8e-12 Score=159.61 Aligned_cols=225 Identities=16% Similarity=0.192 Sum_probs=146.6
Q ss_pred cccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh------
Q 002045 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD------ 453 (976)
Q Consensus 380 ~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~------ 453 (976)
++.|++.+|+.|.+++..... .+-.....++|+||||||||++++.+|..++.. |+.++...
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~-----~~~i~~~~~~d~~~ 390 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK-----YVRMALGGVRDEAE 390 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----EEEEEcCCCCCHHH
Confidence 489999999999988764211 111234579999999999999999999998643 33333221
Q ss_pred HH---hhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhcc-------------CC
Q 002045 454 VL---SKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGL-------------DS 517 (976)
Q Consensus 454 l~---~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~-------------~~ 517 (976)
+. ..|+|.....+...+..+....| ||||||||.+.+.... .....|+..|+.- ..
T Consensus 391 i~g~~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g-------~~~~aLlevld~~~~~~~~d~~~~~~~d 462 (784)
T PRK10787 391 IRGHRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG-------DPASALLEVLDPEQNVAFSDHYLEVDYD 462 (784)
T ss_pred hccchhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCC-------CHHHHHHHHhccccEEEEeccccccccc
Confidence 11 23455554555555555443445 8999999999753221 1234566666631 12
Q ss_pred CCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhc----------CCCCCCHHHHHHHHHH-ccC
Q 002045 518 RGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK----------WKQPPSRELKSELAAS-CVG 586 (976)
Q Consensus 518 ~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~----------~~~~~~~~~l~~lA~~-t~G 586 (976)
-+++++|+|+|.. .|+++|+. || .+|.|..++.++..+|++.++.. ..+.+++.++..++.. +..
T Consensus 463 ls~v~~i~TaN~~-~i~~aLl~--R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e 538 (784)
T PRK10787 463 LSDVMFVATSNSM-NIPAPLLD--RM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTRE 538 (784)
T ss_pred CCceEEEEcCCCC-CCCHHHhc--ce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcc
Confidence 3678999999887 59999999 99 57999999999999999887741 2345677888877753 333
Q ss_pred CCHHHHHHHHHHHHHHHHHhhCCccccCcccccccccceeEeehhhhhccc
Q 002045 587 YCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMS 637 (976)
Q Consensus 587 ~s~~dI~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~ 637 (976)
+..+.|+.++...+...+.+.... .....+.|+.+++...+.
T Consensus 539 ~GaR~LeR~I~~i~r~~l~~~~~~---------~~~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 539 AGVRSLEREISKLCRKAVKQLLLD---------KSLKHIEINGDNLHDYLG 580 (784)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHhc---------CCCceeeecHHHHHHHhC
Confidence 445667766666555555442110 011234566666665554
No 198
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.41 E-value=3.7e-13 Score=167.46 Aligned_cols=138 Identities=13% Similarity=0.217 Sum_probs=106.1
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCccccc--------CCCCCChHHHHHHHHHHHHhcCCceEeccccch
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLS--------DPSAKTPEEALVHIFGEARRTTPSILYIPQFNL 775 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~--------~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~ 775 (976)
+.+||+||||||||++|++||..+ +.+++.+++..+.. ..++|.....+.+.|..|....| ||||||||+
T Consensus 348 ~~lll~GppG~GKT~lAk~iA~~l-~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk 425 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGKSIAKAL-NRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDK 425 (775)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh-cCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCC-EEEEechhh
Confidence 469999999999999999999998 77888886543311 12367777788888888876655 889999999
Q ss_pred hHHHHHHHHHHHHHHHHhhC------C-------CCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHH
Q 002045 776 WWENAHEQLRAVLLTLLEEL------P-------SHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFL 842 (976)
Q Consensus 776 l~~~~~~~~~~~l~~ll~~~------~-------~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~ 842 (976)
+.+..+....++|+.+|+.. . ..++++||+|||.. +.|++ +.+.++ .+|+|+.|+.+++.+|+
T Consensus 426 ~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~-~~i~~--~L~~R~-~vi~~~~~~~~e~~~I~ 501 (775)
T TIGR00763 426 IGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSI-DTIPR--PLLDRM-EVIELSGYTEEEKLEIA 501 (775)
T ss_pred cCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCc-hhCCH--HHhCCe-eEEecCCCCHHHHHHHH
Confidence 98754444456677777531 1 13589999999998 77887 555554 58899999999999999
Q ss_pred HHHHH
Q 002045 843 GRLIE 847 (976)
Q Consensus 843 ~~~l~ 847 (976)
+.++.
T Consensus 502 ~~~l~ 506 (775)
T TIGR00763 502 KKYLI 506 (775)
T ss_pred HHHHH
Confidence 98874
No 199
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.40 E-value=1.5e-11 Score=143.41 Aligned_cols=206 Identities=12% Similarity=0.155 Sum_probs=138.8
Q ss_pred CCCcccc-cChHH--HHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecc
Q 002045 375 SVSFDDI-GGLSE--YIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (976)
Q Consensus 375 ~~~~~~i-~G~~~--~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~ 451 (976)
..+|+++ +|..+ +...+..+...| | ...++++|||++|||||+|++++++.+........++.+++
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~----------~-~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~ 179 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNP----------G-ISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG 179 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCc----------C-cccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 4788884 46544 233333332211 1 22357999999999999999999998865433456677888
Q ss_pred hhHHhhhHhHHHH---HHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCC
Q 002045 452 ADVLSKWVGEAER---QLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (976)
Q Consensus 452 ~~l~~~~~g~~~~---~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn 528 (976)
.+++..+...... .+..+... .....+|+|||++.+.++ ......|+.+++.+...++.+||++..
T Consensus 180 ~~f~~~~~~~l~~~~~~~~~~~~~--~~~~dvLiIDDiq~l~~k---------~~~~e~lf~l~N~~~~~~k~iIltsd~ 248 (450)
T PRK14087 180 DEFARKAVDILQKTHKEIEQFKNE--ICQNDVLIIDDVQFLSYK---------EKTNEIFFTIFNNFIENDKQLFFSSDK 248 (450)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHH--hccCCEEEEeccccccCC---------HHHHHHHHHHHHHHHHcCCcEEEECCC
Confidence 8887766554332 12222122 134569999999988532 223445555555554555556665555
Q ss_pred Cccc---cchhhcCCCCC--ccccCCCCCCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHccCCCHHHHHHHHHHHHH
Q 002045 529 RVDA---IDGALRRPGRF--DREFNFPLPGCEARAEILDIHTRKWKQ--PPSRELKSELAASCVGYCGADLKALCTEAAI 601 (976)
Q Consensus 529 ~~~~---ld~aL~r~gRf--~~~i~~~~P~~~er~~Il~~~l~~~~~--~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~ 601 (976)
.|.. +++.|.+ || ..++.+.+|+.+++.+||+..+...++ .+++++++.||..+.| +.+.+..+|..+..
T Consensus 249 ~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~ 325 (450)
T PRK14087 249 SPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNF 325 (450)
T ss_pred CHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHH
Confidence 5544 5688888 77 457789999999999999999987654 6889999999999887 67888888887765
Q ss_pred HHHH
Q 002045 602 RAFR 605 (976)
Q Consensus 602 ~a~~ 605 (976)
.+..
T Consensus 326 ~a~~ 329 (450)
T PRK14087 326 WSQQ 329 (450)
T ss_pred HHhc
Confidence 5444
No 200
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=8.2e-12 Score=149.25 Aligned_cols=191 Identities=17% Similarity=0.225 Sum_probs=135.2
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC-----------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ----------- 442 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~----------- 442 (976)
.+.+|++|+|++.++..|+.++.. + ..+..+||+||+|||||++|+++|+.+.....
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~~-----------~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLRM-----------D-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 356899999999999999887654 1 44567999999999999999999999965210
Q ss_pred ----------------cEEEEEecchhHHhhhHhHHHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCChhhhhHH
Q 002045 443 ----------------KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHN 502 (976)
Q Consensus 443 ----------------~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~----~~~p~VL~iDEid~L~~~r~~~~~~~~~ 502 (976)
..+++.+++.... ....++.+.+.+. .....|+||||+|.|. .
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~------~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt-----------~ 141 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNISEFDAASNN------SVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS-----------T 141 (620)
T ss_pred CCCccCHHHHHHhccCCCCeEEecccccC------CHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC-----------H
Confidence 1122222221110 1223444444442 2234599999999884 3
Q ss_pred HHHHHHHHHhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002045 503 SIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAA 582 (976)
Q Consensus 503 ~~~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~ 582 (976)
...+.|+..|+.. ...+++|.+|+.+..|.+.+.+ |+ ..|.|..++.++....+...+...+..++.+.++.|+.
T Consensus 142 ~a~naLLK~LEeP--p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~ 216 (620)
T PRK14954 142 AAFNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIAR 216 (620)
T ss_pred HHHHHHHHHHhCC--CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3467788888853 3456666666777888888888 55 68999999999999999998888888899999999998
Q ss_pred HccCCCHHHHHHHHHHH
Q 002045 583 SCVGYCGADLKALCTEA 599 (976)
Q Consensus 583 ~t~G~s~~dI~~l~~~A 599 (976)
.+.| +.+.+.+.+...
T Consensus 217 ~s~G-dlr~al~eLeKL 232 (620)
T PRK14954 217 KAQG-SMRDAQSILDQV 232 (620)
T ss_pred HhCC-CHHHHHHHHHHH
Confidence 8876 445555554443
No 201
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.39 E-value=3.3e-12 Score=156.05 Aligned_cols=202 Identities=20% Similarity=0.273 Sum_probs=141.3
Q ss_pred cccChHHHHHHHHHHHHcccCChhHHhhcCC----CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHH
Q 002045 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHI----TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVL 455 (976)
Q Consensus 380 ~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~----~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~ 455 (976)
.|+|++++++.|...+... ..|+ +|..++||+||||||||++|+++|..++ .+|+.++++++.
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~--------~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~-----~~~i~id~se~~ 525 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMS--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYM 525 (758)
T ss_pred eEeCcHHHHHHHHHHHHHH--------hccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC-----CCcEEeechhhc
Confidence 3799999999999988652 1122 3345799999999999999999999985 456667776653
Q ss_pred -----hhhHhHHHHH-----HHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC---C-----
Q 002045 456 -----SKWVGEAERQ-----LKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD---S----- 517 (976)
Q Consensus 456 -----~~~~g~~~~~-----l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~---~----- 517 (976)
+.++|..... ...+.........+||||||||.+ ...+++.|+..|+.-. .
T Consensus 526 ~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka-----------~~~v~~~LLq~ld~G~ltd~~g~~v 594 (758)
T PRK11034 526 ERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNLLLQVMDNGTLTDNNGRKA 594 (758)
T ss_pred ccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhh-----------hHHHHHHHHHHHhcCeeecCCCcee
Confidence 2333321111 112333344555689999999988 4568888999887321 1
Q ss_pred -CCcEEEEecCCCc-------------------------cccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHh-----
Q 002045 518 -RGQVVLIGATNRV-------------------------DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTR----- 566 (976)
Q Consensus 518 -~~~vivI~atn~~-------------------------~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~----- 566 (976)
-.+++||+|||.- ..+.|.|+. |++.+|.|++.+.++..+|+...+.
T Consensus 595 d~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~ 672 (758)
T PRK11034 595 DFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQAQ 672 (758)
T ss_pred cCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 1367899999832 124577776 9999999999999999999987664
Q ss_pred ----cCCCCCCHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHhh
Q 002045 567 ----KWKQPPSRELKSELAASC--VGYCGADLKALCTEAAIRAFREK 607 (976)
Q Consensus 567 ----~~~~~~~~~~l~~lA~~t--~G~s~~dI~~l~~~A~~~a~~~~ 607 (976)
+..+.+++.+++.|+... ..+.++.|+.++..-....+...
T Consensus 673 l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~ 719 (758)
T PRK11034 673 LDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANE 719 (758)
T ss_pred HHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 345667888888888653 34556788888777666665543
No 202
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=7.2e-12 Score=151.09 Aligned_cols=192 Identities=20% Similarity=0.236 Sum_probs=136.1
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC-----------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ----------- 442 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~----------- 442 (976)
...+|++|+|++.+++.|+.++... ..+..+||+||+|+|||++|+++|+.+.....
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~ 78 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCE 78 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCH
Confidence 3568999999999999998887541 23456899999999999999999999864221
Q ss_pred ---------cEEEEEecchhHHhhhHhHHHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCChhhhhHHHHHHHHH
Q 002045 443 ---------KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLL 509 (976)
Q Consensus 443 ---------~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~----~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll 509 (976)
...++.+++.... ....++.+.+.+.. ....||||||+|.|. ...++.|+
T Consensus 79 ~c~~i~~~~~~d~~~i~~~~~~------~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~-----------~~a~naLL 141 (585)
T PRK14950 79 MCRAIAEGSAVDVIEMDAASHT------SVDDAREIIERVQFRPALARYKVYIIDEVHMLS-----------TAAFNALL 141 (585)
T ss_pred HHHHHhcCCCCeEEEEeccccC------CHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC-----------HHHHHHHH
Confidence 1122233322111 11223333333222 224599999999884 34566788
Q ss_pred HHhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCH
Q 002045 510 ALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCG 589 (976)
Q Consensus 510 ~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~ 589 (976)
..|+.. ...++||.+++..+.+.+.+.+ |+ ..+.|..++..+...++...+...++.++.+.+..|+..+.| +.
T Consensus 142 k~LEep--p~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dl 215 (585)
T PRK14950 142 KTLEEP--PPHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SM 215 (585)
T ss_pred HHHhcC--CCCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 888853 3456666667777778888887 65 568899999999999999999888888999988999988876 66
Q ss_pred HHHHHHHHHHH
Q 002045 590 ADLKALCTEAA 600 (976)
Q Consensus 590 ~dI~~l~~~A~ 600 (976)
+.+.+++...+
T Consensus 216 r~al~~LekL~ 226 (585)
T PRK14950 216 RDAENLLQQLA 226 (585)
T ss_pred HHHHHHHHHHH
Confidence 66666666543
No 203
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=8e-12 Score=150.22 Aligned_cols=190 Identities=23% Similarity=0.224 Sum_probs=138.3
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC-----------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ----------- 442 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~----------- 442 (976)
...+|++|+|++.++..|..++..- ..+.++||+||+|+|||++|+++|+.+.....
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C 78 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKC 78 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCccc
Confidence 4578999999999999999887641 23457999999999999999999999875321
Q ss_pred ----------cEEEEEecchhHHhhhHhHHHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCChhhhhHHHHHHHH
Q 002045 443 ----------KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTL 508 (976)
Q Consensus 443 ----------~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~----~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~L 508 (976)
...++.++.. .......++.++..+.. +...||||||+|.|. ....+.|
T Consensus 79 ~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt-----------~~a~naL 141 (620)
T PRK14948 79 ELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS-----------TAAFNAL 141 (620)
T ss_pred HHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC-----------HHHHHHH
Confidence 0112222221 11122455666655542 234599999999883 4566788
Q ss_pred HHHhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCC
Q 002045 509 LALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYC 588 (976)
Q Consensus 509 l~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s 588 (976)
|..|+. ....+++|++|+.+..+-+.+++ |+ ..+.|..++.++....+...+...+..++.+.+..++..+.|-
T Consensus 142 LK~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~- 215 (620)
T PRK14948 142 LKTLEE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGG- 215 (620)
T ss_pred HHHHhc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-
Confidence 999984 44567777778888888889988 66 6788999999999999988888888888888888888888773
Q ss_pred HHHHHHHHHH
Q 002045 589 GADLKALCTE 598 (976)
Q Consensus 589 ~~dI~~l~~~ 598 (976)
.+++.+++..
T Consensus 216 lr~A~~lLek 225 (620)
T PRK14948 216 LRDAESLLDQ 225 (620)
T ss_pred HHHHHHHHHH
Confidence 3555555544
No 204
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.36 E-value=2.3e-11 Score=136.83 Aligned_cols=229 Identities=17% Similarity=0.195 Sum_probs=166.0
Q ss_pred ccCCCCCccc-ccChHHH--HHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEE
Q 002045 371 QVDESVSFDD-IGGLSEY--IDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (976)
Q Consensus 371 ~~~~~~~~~~-i~G~~~~--k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (976)
...+..+|++ |+|..+. ......+-..| | .+-+.++||||.|+|||+|++|+++.+...+....++
T Consensus 79 ~l~~~ytFdnFv~g~~N~~A~aa~~~va~~~----------g-~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~ 147 (408)
T COG0593 79 GLNPKYTFDNFVVGPSNRLAYAAAKAVAENP----------G-GAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVV 147 (408)
T ss_pred cCCCCCchhheeeCCchHHHHHHHHHHHhcc----------C-CcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEE
Confidence 3557889999 4555443 33333333321 1 2456799999999999999999999999888888899
Q ss_pred EecchhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecC
Q 002045 448 MRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (976)
Q Consensus 448 ~~~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~at 527 (976)
.++...++..++-.....-..-|+.-. +-.+|+||+|+.+.++ ......|+..++.+...++-+|+++.
T Consensus 148 y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk---------~~~qeefFh~FN~l~~~~kqIvltsd 216 (408)
T COG0593 148 YLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK---------ERTQEEFFHTFNALLENGKQIVLTSD 216 (408)
T ss_pred eccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC---------hhHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 999999988777665554444455544 4469999999999754 23355677777766667777777777
Q ss_pred CCcccc---chhhcCCCCCc--cccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Q 002045 528 NRVDAI---DGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIR 602 (976)
Q Consensus 528 n~~~~l---d~aL~r~gRf~--~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~ 602 (976)
..|..+ .+.|.+ ||. .++.+.+|+.+.|..||+..+...++.++++++..+|..... +.+++..++......
T Consensus 217 r~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~ 293 (408)
T COG0593 217 RPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAF 293 (408)
T ss_pred CCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHH
Confidence 777764 588888 764 577889999999999999999999999999999999988764 556666666665555
Q ss_pred HHHhhCCccccCcccccccccceeEeehhhhhccccccc
Q 002045 603 AFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITP 641 (976)
Q Consensus 603 a~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~i~p 641 (976)
+..... .||.....++|..+..
T Consensus 294 a~~~~~-----------------~iTi~~v~e~L~~~~~ 315 (408)
T COG0593 294 ALFTKR-----------------AITIDLVKEILKDLLR 315 (408)
T ss_pred HHhcCc-----------------cCcHHHHHHHHHHhhc
Confidence 544322 2555556666655543
No 205
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.36 E-value=2.2e-12 Score=140.89 Aligned_cols=125 Identities=22% Similarity=0.319 Sum_probs=98.3
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcC----CceEeccccchhHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTT----PSILYIPQFNLWWEN 779 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~----p~ilfiDEid~l~~~ 779 (976)
.+++|+||||||||+||++||... +..|..++. .. ..-+.++.+|+.|+... --|||||||+.+-..
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~-~~~f~~~sA--v~------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~ 119 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTT-NAAFEALSA--VT------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA 119 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhh-CCceEEecc--cc------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh
Confidence 479999999999999999999998 788998873 22 23467999999996543 379999999998876
Q ss_pred HHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 780 AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 780 ~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
.++. ||--++++.-++|-|||.+|.-.|.+ +.+-+ -.|+.+.+.+.++..++++..+.
T Consensus 120 QQD~-------lLp~vE~G~iilIGATTENPsF~ln~--ALlSR-~~vf~lk~L~~~di~~~l~ra~~ 177 (436)
T COG2256 120 QQDA-------LLPHVENGTIILIGATTENPSFELNP--ALLSR-ARVFELKPLSSEDIKKLLKRALL 177 (436)
T ss_pred hhhh-------hhhhhcCCeEEEEeccCCCCCeeecH--HHhhh-hheeeeecCCHHHHHHHHHHHHh
Confidence 6654 45556777777888888888666665 44433 47999999999999999998444
No 206
>PRK06620 hypothetical protein; Validated
Probab=99.35 E-value=1.4e-11 Score=129.59 Aligned_cols=180 Identities=12% Similarity=0.180 Sum_probs=120.9
Q ss_pred cccCCCCCcccc-cCh--HHHHHHHHHHHHcccCChhHHhhcCCCC-CceEEEEcCCCChHHHHHHHHHHHHhhcCCcEE
Q 002045 370 LQVDESVSFDDI-GGL--SEYIDALKEMVFFPLLYPDFFASYHITP-PRGVLLCGPPGTGKTLIARALACAASKAGQKVS 445 (976)
Q Consensus 370 ~~~~~~~~~~~i-~G~--~~~k~~l~~~v~~pl~~~~~~~~~~~~~-~~~vLL~GppGtGKT~laralA~~l~~~~~~~~ 445 (976)
+...+..+|+++ +|- ..+...++++... .+..+ .+.++||||||||||+|++++++..+ ..
T Consensus 7 ~~~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~----------~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~-----~~ 71 (214)
T PRK06620 7 FTTSSKYHPDEFIVSSSNDQAYNIIKNWQCG----------FGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSN-----AY 71 (214)
T ss_pred CCCCCCCCchhhEecccHHHHHHHHHHHHHc----------cccCCCcceEEEECCCCCCHHHHHHHHHhccC-----CE
Confidence 445578899994 454 2345555554321 12223 36799999999999999999988763 22
Q ss_pred EEEecchhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEe
Q 002045 446 FYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIG 525 (976)
Q Consensus 446 ~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~ 525 (976)
++ ..... . ...+ ....+|+|||||.+- . ..|+..++.+...++.+||+
T Consensus 72 ~~--~~~~~-----~------~~~~-----~~~d~lliDdi~~~~-----------~---~~lf~l~N~~~e~g~~ilit 119 (214)
T PRK06620 72 II--KDIFF-----N------EEIL-----EKYNAFIIEDIENWQ-----------E---PALLHIFNIINEKQKYLLLT 119 (214)
T ss_pred Ec--chhhh-----c------hhHH-----hcCCEEEEeccccch-----------H---HHHHHHHHHHHhcCCEEEEE
Confidence 21 11110 0 0111 123699999999541 1 13445555545567788888
Q ss_pred cCCCccc--cchhhcCCCCCc--cccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 002045 526 ATNRVDA--IDGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAA 600 (976)
Q Consensus 526 atn~~~~--ld~aL~r~gRf~--~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~ 600 (976)
++..|.. + ++|++ |+. .++.+..|+.+++..+++..+...++.+++++++.|+.+..| +.+.+.+++....
T Consensus 120 s~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~ 194 (214)
T PRK06620 120 SSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENIN 194 (214)
T ss_pred cCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHH
Confidence 8766655 5 78888 774 468999999999999999999888889999999999999876 5566666666543
No 207
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.34 E-value=3.1e-11 Score=129.26 Aligned_cols=114 Identities=24% Similarity=0.133 Sum_probs=87.9
Q ss_pred CcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCC------------ccccchhhcCCCCCcc
Q 002045 478 PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR------------VDAIDGALRRPGRFDR 545 (976)
Q Consensus 478 p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~------------~~~ld~aL~r~gRf~~ 545 (976)
|.||||||+|.| .-...+.|-..|+.-. .-+||.+||+ |..|+..|+. |. .
T Consensus 292 pGVLFIDEvHmL-----------DIE~FsFlnrAlEse~---aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-l 354 (450)
T COG1224 292 PGVLFIDEVHML-----------DIECFSFLNRALESEL---APIIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-L 354 (450)
T ss_pred cceEEEechhhh-----------hHHHHHHHHHHhhccc---CcEEEEEcCCceeeecccCCcCCCCCCHhhhh--he-e
Confidence 779999999887 3445555666666321 2366667776 4457777776 65 5
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 002045 546 EFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (976)
Q Consensus 546 ~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~ 608 (976)
+|...+++.++..+|+++.+....+.++++.++.|+..-.--+-+-.-+|+.-|...|.++..
T Consensus 355 II~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~ 417 (450)
T COG1224 355 IISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGS 417 (450)
T ss_pred EEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCC
Confidence 788889999999999999999999999999999999888777777778888888888877653
No 208
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=3.4e-11 Score=144.88 Aligned_cols=191 Identities=19% Similarity=0.228 Sum_probs=138.7
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC-------------
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------- 441 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------- 441 (976)
+.+|++|+|++.+++.|..++.. + ..+..+|||||+|+|||++|+++|+.+.+..
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~-----------~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIAT-----------N-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 46899999999999999988754 1 3455699999999999999999999986321
Q ss_pred -------CcEEEEEecchhHHhhhHhHHHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHH
Q 002045 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (976)
Q Consensus 442 -------~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~----~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~ 510 (976)
....++.+++.+.. ....++.+...+.. ...-|+||||+|.|. ....+.|+.
T Consensus 81 C~~~~~~~~~n~~~ld~~~~~------~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls-----------~~a~naLLK 143 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAASNN------SVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS-----------QAAFNAFLK 143 (614)
T ss_pred HHHHhcCCCCceEEecccccC------CHHHHHHHHHHHhhCcccCCcEEEEEECcccCC-----------HHHHHHHHH
Confidence 12233444433211 12334455544432 223499999999883 345678999
Q ss_pred HhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 002045 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (976)
Q Consensus 511 ~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~ 590 (976)
.|+.. ...+++|.+|+....|-+.|++ |+ .++.|..++.++...++...+...++.++.+.+..|+..+.| +.+
T Consensus 144 ~LEep--p~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-dlr 217 (614)
T PRK14971 144 TLEEP--PSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-GMR 217 (614)
T ss_pred HHhCC--CCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 99853 3456666677677888899988 65 679999999999999999999998999999888889988865 555
Q ss_pred HHHHHHHHHH
Q 002045 591 DLKALCTEAA 600 (976)
Q Consensus 591 dI~~l~~~A~ 600 (976)
++.+++...+
T Consensus 218 ~al~~Lekl~ 227 (614)
T PRK14971 218 DALSIFDQVV 227 (614)
T ss_pred HHHHHHHHHH
Confidence 5655555433
No 209
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.32 E-value=1.2e-11 Score=153.13 Aligned_cols=202 Identities=24% Similarity=0.306 Sum_probs=141.9
Q ss_pred cccChHHHHHHHHHHHHcccCChhHHhhcCC----CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHH
Q 002045 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHI----TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVL 455 (976)
Q Consensus 380 ~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~----~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~ 455 (976)
.|+|++.+++.|...+.. .+.|+ +|...+||+||||||||++|+++|..++ ..++.++++++.
T Consensus 455 ~v~GQ~~ai~~l~~~i~~--------~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~ 521 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKR--------SRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYM 521 (731)
T ss_pred ceeCcHHHHHHHHHHHHH--------HhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhh
Confidence 489999999999888754 12233 2334689999999999999999999985 456666666543
Q ss_pred h-----hhHhHHH-----HHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC---------
Q 002045 456 S-----KWVGEAE-----RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD--------- 516 (976)
Q Consensus 456 ~-----~~~g~~~-----~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~--------- 516 (976)
. ..+|... .....+...++....+||||||||.+ ...+.+.|+..|+...
T Consensus 522 ~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka-----------~~~~~~~Ll~~ld~g~~~d~~g~~v 590 (731)
T TIGR02639 522 EKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA-----------HPDIYNILLQVMDYATLTDNNGRKA 590 (731)
T ss_pred hcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc-----------CHHHHHHHHHhhccCeeecCCCccc
Confidence 2 2222111 01122344445566789999999987 3567888888887431
Q ss_pred CCCcEEEEecCCCcc-------------------------ccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhc----
Q 002045 517 SRGQVVLIGATNRVD-------------------------AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK---- 567 (976)
Q Consensus 517 ~~~~vivI~atn~~~-------------------------~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~---- 567 (976)
.-.+++||+|||... .+.|.|+. |++.+|.|.+.+.++..+|++..+..
T Consensus 591 d~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~ 668 (731)
T TIGR02639 591 DFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQ 668 (731)
T ss_pred CCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 123578888887631 14566666 99999999999999999999987753
Q ss_pred -----CCCCCCHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhh
Q 002045 568 -----WKQPPSRELKSELAAS--CVGYCGADLKALCTEAAIRAFREK 607 (976)
Q Consensus 568 -----~~~~~~~~~l~~lA~~--t~G~s~~dI~~l~~~A~~~a~~~~ 607 (976)
..+.+++.+++.|+.. ...+.++.|+.+++......+...
T Consensus 669 l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~ 715 (731)
T TIGR02639 669 LNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDE 715 (731)
T ss_pred HHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHH
Confidence 2356788888889885 455777889888887776666543
No 210
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.31 E-value=9.3e-12 Score=125.74 Aligned_cols=193 Identities=17% Similarity=0.183 Sum_probs=134.9
Q ss_pred cccCCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEe
Q 002045 370 LQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR 449 (976)
Q Consensus 370 ~~~~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~ 449 (976)
+....+..+.||+|.++..+.|.-+... ....+++|.|||||||||.+.++|+++-...+.-.++.+
T Consensus 18 VeKYrP~~l~dIVGNe~tv~rl~via~~-------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 18 VEKYRPSVLQDIVGNEDTVERLSVIAKE-------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred HHhhCchHHHHhhCCHHHHHHHHHHHHc-------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 3344567789999999999988766543 334589999999999999999999998644344445666
Q ss_pred cchhHHhhhHhHHHHHHHHHHHHHH-h---cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEe
Q 002045 450 KGADVLSKWVGEAERQLKLLFEEAQ-R---NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIG 525 (976)
Q Consensus 450 ~~~~l~~~~~g~~~~~l~~~f~~a~-~---~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~ 525 (976)
++++--+- ......+ +.|.+-+ . +...||++||+|++. ...+..|...|+-+... .-++.
T Consensus 85 NASdeRGI--DvVRn~I-K~FAQ~kv~lp~grhKIiILDEADSMT-----------~gAQQAlRRtMEiyS~t--tRFal 148 (333)
T KOG0991|consen 85 NASDERGI--DVVRNKI-KMFAQKKVTLPPGRHKIIILDEADSMT-----------AGAQQALRRTMEIYSNT--TRFAL 148 (333)
T ss_pred cCcccccc--HHHHHHH-HHHHHhhccCCCCceeEEEeeccchhh-----------hHHHHHHHHHHHHHccc--chhhh
Confidence 66653321 1112222 2333322 1 334599999999883 44556677777755444 34556
Q ss_pred cCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHH
Q 002045 526 ATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTE 598 (976)
Q Consensus 526 atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~ 598 (976)
+||..+.|-..+.+ |+ ..+.|...+..+...-|....+..++.++++.++.+.-..+| |+++.++.
T Consensus 149 aCN~s~KIiEPIQS--RC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G----DMRQalNn 214 (333)
T KOG0991|consen 149 ACNQSEKIIEPIQS--RC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG----DMRQALNN 214 (333)
T ss_pred hhcchhhhhhhHHh--hh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc----hHHHHHHH
Confidence 78888888888888 66 568888888888888888888888888988888888877776 55554443
No 211
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.31 E-value=5.5e-11 Score=143.69 Aligned_cols=228 Identities=24% Similarity=0.278 Sum_probs=142.9
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC-----CcEEEEEe
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYMR 449 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~~ 449 (976)
+.+|++|+|++..+..+...+.. ..+.+++|+||||||||++|+++++...... ...+|+.+
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 46788999999998887665533 2345799999999999999999998764221 13567888
Q ss_pred cchhHH-------hhhHhHHHH----HHHHHHHH----------HHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHH
Q 002045 450 KGADVL-------SKWVGEAER----QLKLLFEE----------AQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTL 508 (976)
Q Consensus 450 ~~~~l~-------~~~~g~~~~----~l~~~f~~----------a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~L 508 (976)
+|..+- ..++|.... ..+..+.. .......+|||||++.|- ...+..|
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-----------~~~Q~~L 285 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-----------PLLQNKL 285 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-----------HHHHHHH
Confidence 876541 111221100 00111110 011234599999999883 3345556
Q ss_pred HHHhhccC--------------------------CCCcEEEEec-CCCccccchhhcCCCCCccccCCCCCCHHHHHHHH
Q 002045 509 LALMDGLD--------------------------SRGQVVLIGA-TNRVDAIDGALRRPGRFDREFNFPLPGCEARAEIL 561 (976)
Q Consensus 509 l~~ld~~~--------------------------~~~~vivI~a-tn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il 561 (976)
+..|+.-. ....+++|++ |+.+..++++|++ ||. .+.|++++.+++..|+
T Consensus 286 l~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il 362 (615)
T TIGR02903 286 LKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIV 362 (615)
T ss_pred HHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHH
Confidence 66654210 1124566655 4567789999988 885 6789999999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCccccCcccccccccceeEeehhhhhccccc
Q 002045 562 DIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (976)
Q Consensus 562 ~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~i 639 (976)
+..+...+..+++++++.|+..+. .++...+++..+...+..+... .. .......|+.+|+..++..-
T Consensus 363 ~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~--~~------~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 363 LNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAE--AG------KENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred HHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHH--hc------cCCCCeeECHHHHHHHhCCC
Confidence 999988777788888888887654 3444445555444333222110 00 01123457888888777643
No 212
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=5.8e-12 Score=146.13 Aligned_cols=138 Identities=14% Similarity=0.230 Sum_probs=108.0
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCccccc--------CCCCCChHHHHHHHHHHHHhcCCceEeccccch
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLS--------DPSAKTPEEALVHIFGEARRTTPSILYIPQFNL 775 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~--------~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~ 775 (976)
+-+||+||||+|||.|++.||..+ +-.|+++++.-+.. .-|+|...-.+-+.+..|....|-+| |||||+
T Consensus 351 pILcLVGPPGVGKTSLgkSIA~al-~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~L-LDEIDK 428 (782)
T COG0466 351 PILCLVGPPGVGKTSLGKSIAKAL-GRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFL-LDEIDK 428 (782)
T ss_pred cEEEEECCCCCCchhHHHHHHHHh-CCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCCeEE-eechhh
Confidence 458999999999999999999999 67899988754322 22478777788888889988887554 999999
Q ss_pred hHHHHHHHHHHHHHHHHhh------------CCC-CCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHH
Q 002045 776 WWENAHEQLRAVLLTLLEE------------LPS-HLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFL 842 (976)
Q Consensus 776 l~~~~~~~~~~~l~~ll~~------------~~~-~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~ 842 (976)
+...+...-.++|+..||- ++. -+.|+||||+|.. +.++ +.+...-++|.+.-++.+|..+|-
T Consensus 429 m~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl-~tIP---~PLlDRMEiI~lsgYt~~EKl~IA 504 (782)
T COG0466 429 MGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSL-DTIP---APLLDRMEVIRLSGYTEDEKLEIA 504 (782)
T ss_pred ccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCcc-ccCC---hHHhcceeeeeecCCChHHHHHHH
Confidence 9977655555666666652 122 4689999999988 6666 455553599999999999999999
Q ss_pred HHHHH
Q 002045 843 GRLIE 847 (976)
Q Consensus 843 ~~~l~ 847 (976)
+.||=
T Consensus 505 k~~Li 509 (782)
T COG0466 505 KRHLI 509 (782)
T ss_pred HHhcc
Confidence 98873
No 213
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.29 E-value=5.3e-12 Score=129.85 Aligned_cols=126 Identities=21% Similarity=0.266 Sum_probs=78.1
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHEQ 783 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~~~~ 783 (976)
+++||+||||||||+||.+||+++ +.+|..++.+.+- + ...+..++.... ...|||||||+.|....++.
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~-~~~~~~~sg~~i~-k------~~dl~~il~~l~--~~~ILFIDEIHRlnk~~qe~ 120 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANEL-GVNFKITSGPAIE-K------AGDLAAILTNLK--EGDILFIDEIHRLNKAQQEI 120 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHC-T--EEEEECCC---S------CHHHHHHHHT----TT-EEEECTCCC--HHHHHH
T ss_pred ceEEEECCCccchhHHHHHHHhcc-CCCeEeccchhhh-h------HHHHHHHHHhcC--CCcEEEEechhhccHHHHHH
Confidence 479999999999999999999998 7888877764332 2 124555555544 35799999999988766665
Q ss_pred HHHHHHHHHhhC--------CC--------CCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHH
Q 002045 784 LRAVLLTLLEEL--------PS--------HLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLI 846 (976)
Q Consensus 784 ~~~~l~~ll~~~--------~~--------~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l 846 (976)
|+..|++- .. -.+.-+||||.+. ..|.. +.+=++..+..+..++.++..+|++...
T Consensus 121 ----LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~-g~ls~--pLrdRFgi~~~l~~Y~~~el~~Iv~r~a 192 (233)
T PF05496_consen 121 ----LLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRA-GLLSS--PLRDRFGIVLRLEFYSEEELAKIVKRSA 192 (233)
T ss_dssp ----HHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSG-CCTSH--CCCTTSSEEEE----THHHHHHHHHHCC
T ss_pred ----HHHHhccCeEEEEeccccccceeeccCCCceEeeeeccc-cccch--hHHhhcceecchhcCCHHHHHHHHHHHH
Confidence 44444431 00 1246678888888 66766 3333434667899999999999987443
No 214
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=6.9e-12 Score=144.33 Aligned_cols=138 Identities=13% Similarity=0.230 Sum_probs=108.2
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCccccc--------CCCCCChHHHHHHHHHHHHhcCCceEeccccch
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLS--------DPSAKTPEEALVHIFGEARRTTPSILYIPQFNL 775 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~--------~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~ 775 (976)
+-++|+||||+|||.+|+.||..| +-.|++++..-+.. .-|+|...-.+.+.++.+....|- ++|||||+
T Consensus 439 kIlCf~GPPGVGKTSI~kSIA~AL-nRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPl-iLiDEvDK 516 (906)
T KOG2004|consen 439 KILCFVGPPGVGKTSIAKSIARAL-NRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPL-ILIDEVDK 516 (906)
T ss_pred cEEEEeCCCCCCcccHHHHHHHHh-CCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCce-EEeehhhh
Confidence 458999999999999999999999 66888887643321 123777777888888888777765 45999999
Q ss_pred hHHHHHHHHHHHHHHHHhh------------CC-CCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHH
Q 002045 776 WWENAHEQLRAVLLTLLEE------------LP-SHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFL 842 (976)
Q Consensus 776 l~~~~~~~~~~~l~~ll~~------------~~-~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~ 842 (976)
+..+++..-.++|+.+|+- ++ .-+.|++|||+|.. +.|++ .++..-++|+++-+..+|..+|-
T Consensus 517 lG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~i-dtIP~---pLlDRMEvIelsGYv~eEKv~IA 592 (906)
T KOG2004|consen 517 LGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVI-DTIPP---PLLDRMEVIELSGYVAEEKVKIA 592 (906)
T ss_pred hCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEecccc-ccCCh---hhhhhhheeeccCccHHHHHHHH
Confidence 9977666666778888853 11 14689999999999 77775 44442599999999999999999
Q ss_pred HHHHH
Q 002045 843 GRLIE 847 (976)
Q Consensus 843 ~~~l~ 847 (976)
+.+|-
T Consensus 593 ~~yLi 597 (906)
T KOG2004|consen 593 ERYLI 597 (906)
T ss_pred HHhhh
Confidence 98885
No 215
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.6e-10 Score=130.53 Aligned_cols=210 Identities=20% Similarity=0.258 Sum_probs=144.1
Q ss_pred cccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHh-
Q 002045 378 FDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS- 456 (976)
Q Consensus 378 ~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~- 456 (976)
-+.+.+.++.+++|..++.-.+ .-..|.++++||+||||||.+++.+++++........++.+||..+-.
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~---------~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~ 86 (366)
T COG1474 16 PEELPHREEEINQLASFLAPAL---------RGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTP 86 (366)
T ss_pred cccccccHHHHHHHHHHHHHHh---------cCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCH
Confidence 3449999999999988765422 124456799999999999999999999997664444467778743322
Q ss_pred -----hhH---------hH-HHHHHHHHHHHHHh-cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCc
Q 002045 457 -----KWV---------GE-AERQLKLLFEEAQR-NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQ 520 (976)
Q Consensus 457 -----~~~---------g~-~~~~l~~~f~~a~~-~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~ 520 (976)
..+ |. .......+++.... ....||+|||+|.|....+ .++..|+.+.... ..+
T Consensus 87 ~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~--~~~ 156 (366)
T COG1474 87 YQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPGEN--KVK 156 (366)
T ss_pred HHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcccc--cee
Confidence 111 11 22233444444443 3466999999999985422 6777777776644 567
Q ss_pred EEEEecCCCcc---ccchhhcCCCCC-ccccCCCCCCHHHHHHHHHHHHhc--CCCCCCHHHHHHHHH---HccCCCHHH
Q 002045 521 VVLIGATNRVD---AIDGALRRPGRF-DREFNFPLPGCEARAEILDIHTRK--WKQPPSRELKSELAA---SCVGYCGAD 591 (976)
Q Consensus 521 vivI~atn~~~---~ld~aL~r~gRf-~~~i~~~~P~~~er~~Il~~~l~~--~~~~~~~~~l~~lA~---~t~G~s~~d 591 (976)
+.||+.+|..+ .+++.+.+ +| ...|.||+++.+|...||...... ....++++.++.+|. ...| ..+-
T Consensus 157 v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~ 233 (366)
T COG1474 157 VSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARK 233 (366)
T ss_pred EEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHH
Confidence 88999998864 47888877 44 345899999999999999987764 233455666655553 3344 4455
Q ss_pred HHHHHHHHHHHHHHhhCC
Q 002045 592 LKALCTEAAIRAFREKYP 609 (976)
Q Consensus 592 I~~l~~~A~~~a~~~~~~ 609 (976)
.-.+|+.|+..|-++..+
T Consensus 234 aidilr~A~eiAe~~~~~ 251 (366)
T COG1474 234 AIDILRRAGEIAEREGSR 251 (366)
T ss_pred HHHHHHHHHHHHHhhCCC
Confidence 557788888888876654
No 216
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=2e-11 Score=145.95 Aligned_cols=238 Identities=21% Similarity=0.246 Sum_probs=160.7
Q ss_pred hhHHhhhcccccCCCCCCCCCCCCcccCCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCC----CCCceEEEEcC
Q 002045 346 TLAALTSGIQTAGPSSKGGADIQPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHI----TPPRGVLLCGP 421 (976)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~----~~~~~vLL~Gp 421 (976)
.++...+.+...+.......+...+..-...--..|+|+++++..|...|.. .+.|+ +|...+||.||
T Consensus 458 ~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrr--------aRaGL~dp~rPigsFlF~GP 529 (786)
T COG0542 458 DIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRR--------ARAGLGDPNRPIGSFLFLGP 529 (786)
T ss_pred HHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHH--------HhcCCCCCCCCceEEEeeCC
Confidence 3555555555554432222222222111222233589999999999998865 33444 33457899999
Q ss_pred CCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhh-----hHhHHHHHH-----HHHHHHHHhcCCcEEEEccccccCC
Q 002045 422 PGTGKTLIARALACAASKAGQKVSFYMRKGADVLSK-----WVGEAERQL-----KLLFEEAQRNQPSIIFFDEIDGLAP 491 (976)
Q Consensus 422 pGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~-----~~g~~~~~l-----~~~f~~a~~~~p~VL~iDEid~L~~ 491 (976)
+|+|||.||++||..+. +....++.++.++++.+ .+|.....+ ..+.+..+....|||+||||+.-
T Consensus 530 TGVGKTELAkaLA~~Lf--g~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA-- 605 (786)
T COG0542 530 TGVGKTELAKALAEALF--GDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA-- 605 (786)
T ss_pred CcccHHHHHHHHHHHhc--CCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhc--
Confidence 99999999999999996 33467788888887643 223222211 23444555566789999999754
Q ss_pred CCCChhhhhHHHHHHHHHHHhhccC---CC------CcEEEEecCCCccc----------------------------cc
Q 002045 492 VRSSKQEQIHNSIVSTLLALMDGLD---SR------GQVVLIGATNRVDA----------------------------ID 534 (976)
Q Consensus 492 ~r~~~~~~~~~~~~~~Ll~~ld~~~---~~------~~vivI~atn~~~~----------------------------ld 534 (976)
+..+++.||+.||.-. +. .+.+||+|+|--.. ..
T Consensus 606 ---------HpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~ 676 (786)
T COG0542 606 ---------HPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFR 676 (786)
T ss_pred ---------CHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCC
Confidence 7889999999997422 11 25788999875210 34
Q ss_pred hhhcCCCCCccccCCCCCCHHHHHHHHHHHHhc---------CCCCCCHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHH
Q 002045 535 GALRRPGRFDREFNFPLPGCEARAEILDIHTRK---------WKQPPSRELKSELAASCV--GYCGADLKALCTEAAIRA 603 (976)
Q Consensus 535 ~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~---------~~~~~~~~~l~~lA~~t~--G~s~~dI~~l~~~A~~~a 603 (976)
|.|+. |++.+|.|.+.+.+...+|+..++.. ..+.+++.+.+.|+.... .|.++-|+.+++.-....
T Consensus 677 PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~ 754 (786)
T COG0542 677 PEFLN--RIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDP 754 (786)
T ss_pred HHHHh--hcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHH
Confidence 56666 99999999999999999999876654 345667888888888765 467778888877766655
Q ss_pred HHh
Q 002045 604 FRE 606 (976)
Q Consensus 604 ~~~ 606 (976)
+..
T Consensus 755 La~ 757 (786)
T COG0542 755 LAD 757 (786)
T ss_pred HHH
Confidence 554
No 217
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.28 E-value=2.6e-11 Score=151.12 Aligned_cols=202 Identities=19% Similarity=0.252 Sum_probs=141.2
Q ss_pred ccccChHHHHHHHHHHHHcccCChhHHhhcCC---CCCc-eEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhH
Q 002045 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHI---TPPR-GVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (976)
Q Consensus 379 ~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~---~~~~-~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l 454 (976)
..|+|++.++..|.+.+.... .|+ ..|. .+||+||||||||.+|+++|..+... ...++.++++++
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~--------~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~ 635 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTAR--------AGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG--EQNLITINMSEF 635 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHh--------cCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC--CcceEEEeHHHh
Confidence 358999999999998886521 122 1233 58999999999999999999998533 235677777765
Q ss_pred Hhh------------hHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC------
Q 002045 455 LSK------------WVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD------ 516 (976)
Q Consensus 455 ~~~------------~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~------ 516 (976)
... |+|..+. ..+....+....+||+||||+.+ +..+.+.|+..|+.-.
T Consensus 636 ~~~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka-----------~~~v~~~Llq~ld~g~l~d~~G 702 (852)
T TIGR03345 636 QEAHTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA-----------HPDVLELFYQVFDKGVMEDGEG 702 (852)
T ss_pred hhhhhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc-----------CHHHHHHHHHHhhcceeecCCC
Confidence 432 3332221 12334455667799999999866 4567778888886432
Q ss_pred ---CCCcEEEEecCCCcc-----------------------------ccchhhcCCCCCccccCCCCCCHHHHHHHHHHH
Q 002045 517 ---SRGQVVLIGATNRVD-----------------------------AIDGALRRPGRFDREFNFPLPGCEARAEILDIH 564 (976)
Q Consensus 517 ---~~~~vivI~atn~~~-----------------------------~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~ 564 (976)
.-.+.+||+|||... .+.|+|++ |++ +|.|.+.+.++..+|+...
T Consensus 703 r~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~ 779 (852)
T TIGR03345 703 REIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLK 779 (852)
T ss_pred cEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHH
Confidence 114678888888521 13466666 886 8899999999999999876
Q ss_pred Hhc----------CCCCCCHHHHHHHHHHccC--CCHHHHHHHHHHHHHHHHHh
Q 002045 565 TRK----------WKQPPSRELKSELAASCVG--YCGADLKALCTEAAIRAFRE 606 (976)
Q Consensus 565 l~~----------~~~~~~~~~l~~lA~~t~G--~s~~dI~~l~~~A~~~a~~~ 606 (976)
+.. ..+.+++.+++.|+....+ +.++.|.++++.-....+..
T Consensus 780 L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~ 833 (852)
T TIGR03345 780 LDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSR 833 (852)
T ss_pred HHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 643 2346788888999988755 67888888888766665554
No 218
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.26 E-value=6.2e-11 Score=148.32 Aligned_cols=239 Identities=20% Similarity=0.213 Sum_probs=150.5
Q ss_pred chhHHhhhcccccCCCCCCCCCCCCcccCCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCC----CCCceEEEEc
Q 002045 345 DTLAALTSGIQTAGPSSKGGADIQPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHI----TPPRGVLLCG 420 (976)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~----~~~~~vLL~G 420 (976)
+.++...+.+...+.......+...+..-...-...|+|++.++..|...+... ..|+ .|...+||+|
T Consensus 534 ~~i~~vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~Lf~G 605 (857)
T PRK10865 534 AEIAEVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRS--------RAGLSDPNRPIGSFLFLG 605 (857)
T ss_pred HHHHHHHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEEC
Confidence 345555555554443322222221111112234556899999999999888642 1122 2224689999
Q ss_pred CCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhh-----hHhHHHH-----HHHHHHHHHHhcCCcEEEEccccccC
Q 002045 421 PPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSK-----WVGEAER-----QLKLLFEEAQRNQPSIIFFDEIDGLA 490 (976)
Q Consensus 421 ppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~-----~~g~~~~-----~l~~~f~~a~~~~p~VL~iDEid~L~ 490 (976)
|+|||||++|++||..+.... ..++.++++.+... .+|.... .-..+....+....+||||||++.+
T Consensus 606 p~G~GKT~lA~aLa~~l~~~~--~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka- 682 (857)
T PRK10865 606 PTGVGKTELCKALANFMFDSD--DAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA- 682 (857)
T ss_pred CCCCCHHHHHHHHHHHhhcCC--CcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC-
Confidence 999999999999999885433 35677777766432 1211000 0011222333344589999999877
Q ss_pred CCCCChhhhhHHHHHHHHHHHhhccC---------CCCcEEEEecCCCcc-------------------------ccchh
Q 002045 491 PVRSSKQEQIHNSIVSTLLALMDGLD---------SRGQVVLIGATNRVD-------------------------AIDGA 536 (976)
Q Consensus 491 ~~r~~~~~~~~~~~~~~Ll~~ld~~~---------~~~~vivI~atn~~~-------------------------~ld~a 536 (976)
...++..|+..|+.-. ...+.+||+|||... .+.|+
T Consensus 683 ----------~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PE 752 (857)
T PRK10865 683 ----------HPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPE 752 (857)
T ss_pred ----------CHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHH
Confidence 3557778888886321 113467888888621 13467
Q ss_pred hcCCCCCccccCCCCCCHHHHHHHHHHHHhc---------CCCCCCHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHHHH
Q 002045 537 LRRPGRFDREFNFPLPGCEARAEILDIHTRK---------WKQPPSRELKSELAASC--VGYCGADLKALCTEAAIRAFR 605 (976)
Q Consensus 537 L~r~gRf~~~i~~~~P~~~er~~Il~~~l~~---------~~~~~~~~~l~~lA~~t--~G~s~~dI~~l~~~A~~~a~~ 605 (976)
|+. |++.++.|.+++.+....|++.++.. ..+.+++++++.|+... ..|.++.|+.+++.-....+.
T Consensus 753 Lln--Rld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la 830 (857)
T PRK10865 753 FIN--RIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLA 830 (857)
T ss_pred HHH--hCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHH
Confidence 777 89999999999999999999876654 23467888888888753 234567888888877666555
Q ss_pred h
Q 002045 606 E 606 (976)
Q Consensus 606 ~ 606 (976)
.
T Consensus 831 ~ 831 (857)
T PRK10865 831 Q 831 (857)
T ss_pred H
Confidence 4
No 219
>PRK09087 hypothetical protein; Validated
Probab=99.25 E-value=6.5e-11 Score=125.69 Aligned_cols=187 Identities=15% Similarity=0.139 Sum_probs=120.9
Q ss_pred CcccCCCCCccccc-ChHH--HHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEE
Q 002045 369 PLQVDESVSFDDIG-GLSE--YIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVS 445 (976)
Q Consensus 369 ~~~~~~~~~~~~i~-G~~~--~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~ 445 (976)
++...+..+|++++ |-.+ +...+..+ + + .+...++|+||+|+|||+|++++|...+ +.
T Consensus 11 ~~~~~~~~~~~~Fi~~~~N~~a~~~l~~~---~----------~-~~~~~l~l~G~~GsGKThLl~~~~~~~~-----~~ 71 (226)
T PRK09087 11 NFSHDPAYGRDDLLVTESNRAAVSLVDHW---P----------N-WPSPVVVLAGPVGSGKTHLASIWREKSD-----AL 71 (226)
T ss_pred CCCCCCCCChhceeecCchHHHHHHHHhc---c----------c-CCCCeEEEECCCCCCHHHHHHHHHHhcC-----CE
Confidence 45556788999965 3322 33322221 1 1 1234599999999999999999997653 33
Q ss_pred EEEecchhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEe
Q 002045 446 FYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIG 525 (976)
Q Consensus 446 ~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~ 525 (976)
+ ++...+...++ ..... .+|+|||++.+... ...|+..++.+...++.+||+
T Consensus 72 ~--i~~~~~~~~~~-----------~~~~~---~~l~iDDi~~~~~~------------~~~lf~l~n~~~~~g~~ilit 123 (226)
T PRK09087 72 L--IHPNEIGSDAA-----------NAAAE---GPVLIEDIDAGGFD------------ETGLFHLINSVRQAGTSLLMT 123 (226)
T ss_pred E--ecHHHcchHHH-----------Hhhhc---CeEEEECCCCCCCC------------HHHHHHHHHHHHhCCCeEEEE
Confidence 3 33332222111 11111 38999999976310 123555555555566778887
Q ss_pred cCCCccc---cchhhcCCCCC--ccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 002045 526 ATNRVDA---IDGALRRPGRF--DREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAA 600 (976)
Q Consensus 526 atn~~~~---ld~aL~r~gRf--~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~ 600 (976)
++..|.. ..+.|++ || ..++.+..|+.+++.+|++..+...++.+++++++.|+.+..| +.+.+..++....
T Consensus 124 s~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~ 200 (226)
T PRK09087 124 SRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRLD 200 (226)
T ss_pred CCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHH
Confidence 7766553 3577888 66 4788999999999999999999998999999999999999885 3344444444444
Q ss_pred HHHHH
Q 002045 601 IRAFR 605 (976)
Q Consensus 601 ~~a~~ 605 (976)
..+..
T Consensus 201 ~~~~~ 205 (226)
T PRK09087 201 RLALE 205 (226)
T ss_pred HHHHH
Confidence 33333
No 220
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.25 E-value=1e-10 Score=127.78 Aligned_cols=105 Identities=24% Similarity=0.149 Sum_probs=67.2
Q ss_pred CcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCC------------ccccchhhcCCCCCcc
Q 002045 478 PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR------------VDAIDGALRRPGRFDR 545 (976)
Q Consensus 478 p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~------------~~~ld~aL~r~gRf~~ 545 (976)
|.||||||+|.| .-...+.|-.+|+.- -.-+||.+||+ |..++..|+. |+ .
T Consensus 279 pGVLFIDEvHmL-----------DiEcFsfLnralEs~---~sPiiIlATNRg~~~irGt~~~sphGiP~DlLD--Rl-l 341 (398)
T PF06068_consen 279 PGVLFIDEVHML-----------DIECFSFLNRALESE---LSPIIILATNRGITKIRGTDIISPHGIPLDLLD--RL-L 341 (398)
T ss_dssp E-EEEEESGGGS-----------BHHHHHHHHHHHTST---T--EEEEEES-SEEE-BTTS-EEETT--HHHHT--TE-E
T ss_pred cceEEecchhhc-----------cHHHHHHHHHHhcCC---CCcEEEEecCceeeeccCccCcCCCCCCcchHh--hc-E
Confidence 779999999988 344555666667632 22366667775 3447778887 66 6
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHH
Q 002045 546 EFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEA 599 (976)
Q Consensus 546 ~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A 599 (976)
+|...+++.++..+|++..+....+.++++.++.|+......+-+-.-+|+.-|
T Consensus 342 II~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a 395 (398)
T PF06068_consen 342 IIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPA 395 (398)
T ss_dssp EEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHH
T ss_pred EEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhh
Confidence 788899999999999999999999999999988888766655555555554433
No 221
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.24 E-value=4.4e-10 Score=114.86 Aligned_cols=204 Identities=21% Similarity=0.292 Sum_probs=144.5
Q ss_pred CCCcccCCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEE
Q 002045 367 IQPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSF 446 (976)
Q Consensus 367 ~~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~ 446 (976)
..|+...+.+.+.+|+|.+.+++.|.+-- +.|.. | .|.++|||+|.-|||||++++|+.+++...+ ..+
T Consensus 48 L~pv~~~~~i~L~~l~Gvd~qk~~L~~NT-------~~F~~-G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~g--lrL 116 (287)
T COG2607 48 LEPVPDPDPIDLADLVGVDRQKEALVRNT-------EQFAE-G-LPANNVLLWGARGTGKSSLVKALLNEYADEG--LRL 116 (287)
T ss_pred ccCCCCCCCcCHHHHhCchHHHHHHHHHH-------HHHHc-C-CcccceEEecCCCCChHHHHHHHHHHHHhcC--CeE
Confidence 44555557799999999999999986543 33332 2 5788999999999999999999999998777 448
Q ss_pred EEecchhHHhhhHhHHHHHHHHHHHHHHhc-CCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCC--CCcEEE
Q 002045 447 YMRKGADVLSKWVGEAERQLKLLFEEAQRN-QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS--RGQVVL 523 (976)
Q Consensus 447 ~~~~~~~l~~~~~g~~~~~l~~~f~~a~~~-~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~--~~~viv 523 (976)
+.|+..++.. +-.+++..+.. ...|||+|++- + .. .......|...|++--. ..+|+|
T Consensus 117 VEV~k~dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLS-F-----e~----gd~~yK~LKs~LeG~ve~rP~NVl~ 177 (287)
T COG2607 117 VEVDKEDLAT---------LPDLVELLRARPEKFILFCDDLS-F-----EE----GDDAYKALKSALEGGVEGRPANVLF 177 (287)
T ss_pred EEEcHHHHhh---------HHHHHHHHhcCCceEEEEecCCC-C-----CC----CchHHHHHHHHhcCCcccCCCeEEE
Confidence 8888887643 23444444432 35699999982 1 11 22334456666765432 358999
Q ss_pred EecCCCccccchh--------------------hcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHH----
Q 002045 524 IGATNRVDAIDGA--------------------LRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSE---- 579 (976)
Q Consensus 524 I~atn~~~~ld~a--------------------L~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~---- 579 (976)
.+|+|+-..|+.. +.-+.||...+.|.+++.++-..|+..+++..++..+++.++.
T Consensus 178 YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~ 257 (287)
T COG2607 178 YATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQ 257 (287)
T ss_pred EEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999986554321 1112499999999999999999999999999999987755533
Q ss_pred HHHHccCCCHHHHHHHHHHHH
Q 002045 580 LAASCVGYCGADLKALCTEAA 600 (976)
Q Consensus 580 lA~~t~G~s~~dI~~l~~~A~ 600 (976)
.|..-.|-||+-..+.++..+
T Consensus 258 WAt~rg~RSGR~A~QF~~~~~ 278 (287)
T COG2607 258 WATTRGGRSGRVAWQFIRDLA 278 (287)
T ss_pred HHHhcCCCccHhHHHHHHHHH
Confidence 344456677777666665443
No 222
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.23 E-value=4.8e-12 Score=161.16 Aligned_cols=74 Identities=27% Similarity=0.526 Sum_probs=71.7
Q ss_pred hhhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 903 LRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 903 L~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
+..|+..+..|..+|+|..||++..+|+|++||++||||+||+.|+..+.|.++.+|..||.|||+||.+||++
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~ 1379 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED 1379 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999974
No 223
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2.9e-11 Score=134.61 Aligned_cols=134 Identities=18% Similarity=0.205 Sum_probs=103.2
Q ss_pred ccCCceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH-
Q 002045 701 VYRPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN- 779 (976)
Q Consensus 701 ~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~- 779 (976)
.+++|.|||||||||||++..|||..| ++.++-+.+.++-. ..+ +++++..+... +||+|.+||.-+..
T Consensus 233 awKRGYLLYGPPGTGKSS~IaAmAn~L-~ydIydLeLt~v~~------n~d-Lr~LL~~t~~k--SIivIEDIDcs~~l~ 302 (457)
T KOG0743|consen 233 AWKRGYLLYGPPGTGKSSFIAAMANYL-NYDIYDLELTEVKL------DSD-LRHLLLATPNK--SILLIEDIDCSFDLR 302 (457)
T ss_pred chhccceeeCCCCCCHHHHHHHHHhhc-CCceEEeeeccccC------cHH-HHHHHHhCCCC--cEEEEeecccccccc
Confidence 356899999999999999999999999 78898888665432 223 88988776543 79999999997631
Q ss_pred ---------HH----HHHHHHHHHHHhhCCC--CCCEEEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHH
Q 002045 780 ---------AH----EQLRAVLLTLLEELPS--HLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFL 842 (976)
Q Consensus 780 ---------~~----~~~~~~l~~ll~~~~~--~~~v~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~ 842 (976)
.+ .-.+.-|+.++|++-+ +.--|||.|||.. +-||| |.+|+|| ..|++..=+.++-..++
T Consensus 303 ~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~-EkLDP--ALlRpGRmDmhI~mgyCtf~~fK~La 379 (457)
T KOG0743|consen 303 ERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK-EKLDP--ALLRPGRMDMHIYMGYCTFEAFKTLA 379 (457)
T ss_pred cccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh-hhcCH--hhcCCCcceeEEEcCCCCHHHHHHHH
Confidence 11 1225567888888854 3456677899999 89999 9999998 77778888888877777
Q ss_pred HHHHH
Q 002045 843 GRLIE 847 (976)
Q Consensus 843 ~~~l~ 847 (976)
+..|.
T Consensus 380 ~nYL~ 384 (457)
T KOG0743|consen 380 SNYLG 384 (457)
T ss_pred HHhcC
Confidence 76665
No 224
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.22 E-value=4.9e-11 Score=132.82 Aligned_cols=166 Identities=27% Similarity=0.375 Sum_probs=104.0
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc----CCcEEEEEe
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA----GQKVSFYMR 449 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~----~~~~~~~~~ 449 (976)
....|.+|+|++.++..|.-.+.. ....|+||+|+||||||++|++++..+... +..+.+..+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 356799999999999887654322 112589999999999999999999988321 000111110
Q ss_pred cc---------hhHHh---------------hhHhHH--HHHH---HHHHHH--HHhcCCcEEEEccccccCCCCCChhh
Q 002045 450 KG---------ADVLS---------------KWVGEA--ERQL---KLLFEE--AQRNQPSIIFFDEIDGLAPVRSSKQE 498 (976)
Q Consensus 450 ~~---------~~l~~---------------~~~g~~--~~~l---~~~f~~--a~~~~p~VL~iDEid~L~~~r~~~~~ 498 (976)
.+ ..+.. ..+|.. ...+ ...|.. .......+||||||+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl--------- 140 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL--------- 140 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC---------
Confidence 00 00000 011110 0000 000110 00111249999999887
Q ss_pred hhHHHHHHHHHHHhhccC-----------CCCcEEEEecCCCcc-ccchhhcCCCCCccccCCCCCCH-HHHHHHHHHHH
Q 002045 499 QIHNSIVSTLLALMDGLD-----------SRGQVVLIGATNRVD-AIDGALRRPGRFDREFNFPLPGC-EARAEILDIHT 565 (976)
Q Consensus 499 ~~~~~~~~~Ll~~ld~~~-----------~~~~vivI~atn~~~-~ld~aL~r~gRf~~~i~~~~P~~-~er~~Il~~~l 565 (976)
...++..|+..|+.-. ....+++|+++|..+ .++++|.. ||...+.+++|.. +++.+|+....
T Consensus 141 --~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 141 --EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred --CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhh
Confidence 4567788888886422 224688999998755 48889988 9999999998876 89999998643
No 225
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.22 E-value=1.4e-10 Score=145.41 Aligned_cols=205 Identities=20% Similarity=0.243 Sum_probs=140.7
Q ss_pred ccccChHHHHHHHHHHHHcccCChhHHhhcCC----CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhH
Q 002045 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHI----TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (976)
Q Consensus 379 ~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~----~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l 454 (976)
..|+|++.+++.|...+... +.|+ +|...+||+||+|||||++|++||+.+... ...++.++.+++
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~ 578 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRA--------RVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEY 578 (821)
T ss_pred CcCcChHHHHHHHHHHHHHH--------hhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhc
Confidence 35899999999998887642 1222 233468999999999999999999998533 245666666654
Q ss_pred H-----hhhHhHHHH-----HHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC--------
Q 002045 455 L-----SKWVGEAER-----QLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-------- 516 (976)
Q Consensus 455 ~-----~~~~g~~~~-----~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~-------- 516 (976)
. ++.+|.... ....+...++....+||||||+|.+ ...+.+.|+..|+.-.
T Consensus 579 ~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka-----------~~~v~~~Llq~le~g~~~d~~g~~ 647 (821)
T CHL00095 579 MEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA-----------HPDIFNLLLQILDDGRLTDSKGRT 647 (821)
T ss_pred cccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC-----------CHHHHHHHHHHhccCceecCCCcE
Confidence 3 222221110 1123445555555689999999977 4667888888887421
Q ss_pred -CCCcEEEEecCCCccc-------------------------------------cchhhcCCCCCccccCCCCCCHHHHH
Q 002045 517 -SRGQVVLIGATNRVDA-------------------------------------IDGALRRPGRFDREFNFPLPGCEARA 558 (976)
Q Consensus 517 -~~~~vivI~atn~~~~-------------------------------------ld~aL~r~gRf~~~i~~~~P~~~er~ 558 (976)
...+++||+|||.... +.|.|+. |++.+|.|.+.+.++..
T Consensus 648 v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~ 725 (821)
T CHL00095 648 IDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVW 725 (821)
T ss_pred EecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHH
Confidence 1246788888885311 1245566 89999999999999999
Q ss_pred HHHHHHHhcC---------CCCCCHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHh
Q 002045 559 EILDIHTRKW---------KQPPSRELKSELAAS--CVGYCGADLKALCTEAAIRAFRE 606 (976)
Q Consensus 559 ~Il~~~l~~~---------~~~~~~~~l~~lA~~--t~G~s~~dI~~l~~~A~~~a~~~ 606 (976)
+|+...+... .+.+++++++.|+.. ...+.++.|+.+++......+..
T Consensus 726 ~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~ 784 (821)
T CHL00095 726 EIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAE 784 (821)
T ss_pred HHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHH
Confidence 9998776542 356678888888886 33466778888887766655554
No 226
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.20 E-value=3.3e-10 Score=142.50 Aligned_cols=206 Identities=22% Similarity=0.264 Sum_probs=143.9
Q ss_pred ccccChHHHHHHHHHHHHcccCChhHHhhcCC----CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhH
Q 002045 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHI----TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (976)
Q Consensus 379 ~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~----~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l 454 (976)
..|+|++.++..|...+... ..|+ .|...+||+||+|||||++|++||..+.... .+++.++++.+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~--~~~i~~d~s~~ 634 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDE--DAMVRIDMSEY 634 (852)
T ss_pred cccCCChHHHHHHHHHHHHH--------hccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCC--CcEEEEechhh
Confidence 45899999999999987652 1222 3445799999999999999999999886433 45666776654
Q ss_pred Hh-----hhHhHHHH-----HHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC--------
Q 002045 455 LS-----KWVGEAER-----QLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-------- 516 (976)
Q Consensus 455 ~~-----~~~g~~~~-----~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~-------- 516 (976)
.. ..+|.... ....+....+....+|||||||+.+ ...++..|+..|+.-.
T Consensus 635 ~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka-----------~~~v~~~Ll~~l~~g~l~d~~g~~ 703 (852)
T TIGR03346 635 MEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA-----------HPDVFNVLLQVLDDGRLTDGQGRT 703 (852)
T ss_pred cccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-----------CHHHHHHHHHHHhcCceecCCCeE
Confidence 32 22221100 0112333444555679999999977 4567888888886321
Q ss_pred -CCCcEEEEecCCCccc-------------------------cchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhc---
Q 002045 517 -SRGQVVLIGATNRVDA-------------------------IDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK--- 567 (976)
Q Consensus 517 -~~~~vivI~atn~~~~-------------------------ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~--- 567 (976)
.-.+++||+|||.... +.|.|.. |++.++.|.+++.++..+|+...+..
T Consensus 704 vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~ 781 (852)
T TIGR03346 704 VDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRK 781 (852)
T ss_pred EecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHH
Confidence 1235788899987211 2355655 89999999999999999999876642
Q ss_pred ------CCCCCCHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHhh
Q 002045 568 ------WKQPPSRELKSELAASCV--GYCGADLKALCTEAAIRAFREK 607 (976)
Q Consensus 568 ------~~~~~~~~~l~~lA~~t~--G~s~~dI~~l~~~A~~~a~~~~ 607 (976)
..+.+++++++.|+...- .+..+.|++++.......+...
T Consensus 782 ~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~ 829 (852)
T TIGR03346 782 RLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKK 829 (852)
T ss_pred HHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHH
Confidence 235678888899998743 5778999999998887776653
No 227
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.19 E-value=3.3e-10 Score=127.69 Aligned_cols=192 Identities=13% Similarity=0.097 Sum_probs=124.4
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC---cEEEEEe--
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ---KVSFYMR-- 449 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~---~~~~~~~-- 449 (976)
+..+++|+|++.+++.|..++.. | ..+..+||+||+|+|||++|+.+|+.+..... .......
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~-----------g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYRE-----------G-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHc-----------C-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 46788999999999999998764 1 44567999999999999999999999865210 0000000
Q ss_pred -cchh--HH-----------h-hh-H--h-----HHHHHHHHHHHHH----HhcCCcEEEEccccccCCCCCChhhhhHH
Q 002045 450 -KGAD--VL-----------S-KW-V--G-----EAERQLKLLFEEA----QRNQPSIIFFDEIDGLAPVRSSKQEQIHN 502 (976)
Q Consensus 450 -~~~~--l~-----------~-~~-~--g-----~~~~~l~~~f~~a----~~~~p~VL~iDEid~L~~~r~~~~~~~~~ 502 (976)
.+.. .+ . .+ . + -.-..++.+.+.. ..+...||||||+|.|. .
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~-----------~ 155 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN-----------R 155 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC-----------H
Confidence 0000 00 0 00 0 0 0012233332222 23345699999999883 4
Q ss_pred HHHHHHHHHhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002045 503 SIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAA 582 (976)
Q Consensus 503 ~~~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~ 582 (976)
...+.||..|+... .++++|..|+.+..+.+.+++ |+ ..+.|++|+.++..++|........ ++...+..++.
T Consensus 156 ~aanaLLk~LEEpp--~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~ 228 (351)
T PRK09112 156 NAANAILKTLEEPP--ARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQ 228 (351)
T ss_pred HHHHHHHHHHhcCC--CCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHH
Confidence 45667888888633 345555556778888899988 87 6899999999999999987433222 55666777877
Q ss_pred HccCCCHHHHHHHHH
Q 002045 583 SCVGYCGADLKALCT 597 (976)
Q Consensus 583 ~t~G~s~~dI~~l~~ 597 (976)
.+.|- +....+++.
T Consensus 229 ~s~G~-pr~Al~ll~ 242 (351)
T PRK09112 229 RSKGS-VRKALLLLN 242 (351)
T ss_pred HcCCC-HHHHHHHHh
Confidence 77764 334444443
No 228
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.19 E-value=2.8e-10 Score=111.48 Aligned_cols=140 Identities=40% Similarity=0.647 Sum_probs=88.7
Q ss_pred ChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhHhHH
Q 002045 383 GLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEA 462 (976)
Q Consensus 383 G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~g~~ 462 (976)
|.+.++..+...+.. ....+++|+||||||||++++.++..+.... ..++.+++...........
T Consensus 2 ~~~~~~~~i~~~~~~-------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~--~~v~~~~~~~~~~~~~~~~ 66 (151)
T cd00009 2 GQEEAIEALREALEL-------------PPPKNLLLYGPPGTGKTTLARAIANELFRPG--APFLYLNASDLLEGLVVAE 66 (151)
T ss_pred chHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCC--CCeEEEehhhhhhhhHHHH
Confidence 556666666665433 3456899999999999999999999985333 4455566655544332221
Q ss_pred HHH---HHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCC----CCcEEEEecCCCcc--cc
Q 002045 463 ERQ---LKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS----RGQVVLIGATNRVD--AI 533 (976)
Q Consensus 463 ~~~---l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~----~~~vivI~atn~~~--~l 533 (976)
... ....+.......+.+|+|||++.+. ......++..+..... ..++.||+++|... .+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~-----------~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~ 135 (151)
T cd00009 67 LFGHFLVRLLFELAEKAKPGVLFIDEIDSLS-----------RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDL 135 (151)
T ss_pred HhhhhhHhHHHHhhccCCCeEEEEeChhhhh-----------HHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCc
Confidence 111 1222233344567899999998772 2223344455544332 35788888888766 57
Q ss_pred chhhcCCCCCccccCCC
Q 002045 534 DGALRRPGRFDREFNFP 550 (976)
Q Consensus 534 d~aL~r~gRf~~~i~~~ 550 (976)
++.+.. ||+..+.++
T Consensus 136 ~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 136 DRALYD--RLDIRIVIP 150 (151)
T ss_pred ChhHHh--hhccEeecC
Confidence 777777 887777765
No 229
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.17 E-value=4.4e-10 Score=122.45 Aligned_cols=133 Identities=23% Similarity=0.299 Sum_probs=89.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecc------hhHHhhhHhHHHHH-HHH-----------------
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG------ADVLSKWVGEAERQ-LKL----------------- 468 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~------~~l~~~~~g~~~~~-l~~----------------- 468 (976)
..+|||+||||||||++|+++|..++ .+++.+++ +++++.+.+..... +..
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg-----~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRD-----RPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWV 95 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC-----CCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeec
Confidence 46899999999999999999999775 34444433 34444443221111 111
Q ss_pred --HHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC--------------CCCcEEEEecCCCcc-
Q 002045 469 --LFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD--------------SRGQVVLIGATNRVD- 531 (976)
Q Consensus 469 --~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~--------------~~~~vivI~atn~~~- 531 (976)
.+-.|.. .+.+|+||||+.+- ..++..|+..|+.-. ....+.||+|+|...
T Consensus 96 ~g~l~~A~~-~g~~lllDEi~r~~-----------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~ 163 (262)
T TIGR02640 96 DNRLTLAVR-EGFTLVYDEFTRSK-----------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEY 163 (262)
T ss_pred CchHHHHHH-cCCEEEEcchhhCC-----------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccc
Confidence 1111222 23599999999873 456677777775311 113577999999753
Q ss_pred ----ccchhhcCCCCCccccCCCCCCHHHHHHHHHHHH
Q 002045 532 ----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHT 565 (976)
Q Consensus 532 ----~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l 565 (976)
.++++|.+ || ..+.++.|+.++..+|++.++
T Consensus 164 ~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 164 AGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred cceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 46888998 88 578999999999999998875
No 230
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.17 E-value=5.6e-11 Score=146.62 Aligned_cols=137 Identities=12% Similarity=0.187 Sum_probs=101.9
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCccccc--------CCCCCChHHHHHHHHHHHHhcCCceEeccccch
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLS--------DPSAKTPEEALVHIFGEARRTTPSILYIPQFNL 775 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~--------~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~ 775 (976)
+.++|+||||||||++|+++|..+ +.+++.+++..+.. ..++|.....+.+.+..+.... .||||||||+
T Consensus 350 ~~i~l~GppG~GKTtl~~~ia~~l-~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~-~villDEidk 427 (784)
T PRK10787 350 PILCLVGPPGVGKTSLGQSIAKAT-GRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDK 427 (784)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh-CCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCC-CEEEEEChhh
Confidence 469999999999999999999998 67888877654321 1235665556666666665444 4889999999
Q ss_pred hHHHHHHHHHHHHHHHHhhC-------------CCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHH
Q 002045 776 WWENAHEQLRAVLLTLLEEL-------------PSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFL 842 (976)
Q Consensus 776 l~~~~~~~~~~~l~~ll~~~-------------~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~ 842 (976)
+....+.....+|+.+|+.- -+.+.|++|||+|.. .|++ +.+-|. .+|.|..++.++..+|.
T Consensus 428 ~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~--~i~~--aLl~R~-~ii~~~~~t~eek~~Ia 502 (784)
T PRK10787 428 MSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM--NIPA--PLLDRM-EVIRLSGYTEDEKLNIA 502 (784)
T ss_pred cccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC--CCCH--HHhcce-eeeecCCCCHHHHHHHH
Confidence 98764433456777777631 124789999999876 4777 555443 68889999999999999
Q ss_pred HHHHH
Q 002045 843 GRLIE 847 (976)
Q Consensus 843 ~~~l~ 847 (976)
+.+|.
T Consensus 503 ~~~L~ 507 (784)
T PRK10787 503 KRHLL 507 (784)
T ss_pred HHhhh
Confidence 99995
No 231
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.17 E-value=6.1e-10 Score=126.15 Aligned_cols=183 Identities=14% Similarity=0.119 Sum_probs=120.8
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC---c-------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ---K------- 443 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~---~------- 443 (976)
.+.++++|+|++.+++.|..++.. -+.+..+||+||+|+||+++|.++|+.+..... .
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRS------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 356889999999999999988765 144567999999999999999999999864321 0
Q ss_pred -------------------EEEEEecc--hhHHhhh-HhHHHHHHHHHHHHH----HhcCCcEEEEccccccCCCCCChh
Q 002045 444 -------------------VSFYMRKG--ADVLSKW-VGEAERQLKLLFEEA----QRNQPSIIFFDEIDGLAPVRSSKQ 497 (976)
Q Consensus 444 -------------------~~~~~~~~--~~l~~~~-~g~~~~~l~~~f~~a----~~~~p~VL~iDEid~L~~~r~~~~ 497 (976)
-.++.+.. .+--.+. ..-.-..++.+...+ ....+.||+|||+|.+
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-------- 153 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-------- 153 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc--------
Confidence 00111110 0000000 000112334443332 2345779999999988
Q ss_pred hhhHHHHHHHHHHHhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHH
Q 002045 498 EQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELK 577 (976)
Q Consensus 498 ~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l 577 (976)
.....+.|+..++. ....+++|.+|+.++.+.+.+++ |+ ..|.|++|+.++..++|...... .....+
T Consensus 154 ---~~~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~----~~~~~~ 221 (365)
T PRK07471 154 ---NANAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD----LPDDPR 221 (365)
T ss_pred ---CHHHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc----CCHHHH
Confidence 34567788888884 34556777788888888888887 66 68999999999999998775421 223333
Q ss_pred HHHHHHccCCC
Q 002045 578 SELAASCVGYC 588 (976)
Q Consensus 578 ~~lA~~t~G~s 588 (976)
..++..+.|-.
T Consensus 222 ~~l~~~s~Gsp 232 (365)
T PRK07471 222 AALAALAEGSV 232 (365)
T ss_pred HHHHHHcCCCH
Confidence 55666666643
No 232
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.16 E-value=5.8e-10 Score=129.23 Aligned_cols=211 Identities=20% Similarity=0.230 Sum_probs=143.7
Q ss_pred cccCCCCCcccccChHHHHHHHHHHHHcccCChhHHh----h-------------------cCCCCCceEEEEcCCCChH
Q 002045 370 LQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFA----S-------------------YHITPPRGVLLCGPPGTGK 426 (976)
Q Consensus 370 ~~~~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~----~-------------------~~~~~~~~vLL~GppGtGK 426 (976)
+.....-.|.||.|-+.+-+.+.-++.. -.+-+|. + .+-++.+-+|||||||.||
T Consensus 262 Vdky~Pk~FtdLLsDe~tNR~~L~WLK~--WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 262 VDKYRPKKFTDLLSDEKTNRRMLGWLKQ--WDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred ecccChhHHHHHhcchhHHHHHHHHHHh--hcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 3344567899999999988887777632 1222332 1 1223456789999999999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEEecchhHHhhhHhHHHHHHHHHHHH-HH---hcCCcEEEEccccccCCCCCChhhhhHH
Q 002045 427 TLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEE-AQ---RNQPSIIFFDEIDGLAPVRSSKQEQIHN 502 (976)
Q Consensus 427 T~laralA~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~-a~---~~~p~VL~iDEid~L~~~r~~~~~~~~~ 502 (976)
||||+.+|+.+| ..++.+|+++--+. ......+..+... -. ..+|.+|+|||||.-. .
T Consensus 340 TTLAHViAkqaG-----YsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~-----------~ 401 (877)
T KOG1969|consen 340 TTLAHVIAKQAG-----YSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP-----------R 401 (877)
T ss_pred hHHHHHHHHhcC-----ceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCCc-----------H
Confidence 999999999996 66788888874321 1122222222211 11 2569999999998432 3
Q ss_pred HHHHHHHHHhhc--cC----CC-------------CcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHH
Q 002045 503 SIVSTLLALMDG--LD----SR-------------GQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDI 563 (976)
Q Consensus 503 ~~~~~Ll~~ld~--~~----~~-------------~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~ 563 (976)
..+..++..+.. .. .. -...||+.||. .-.|+|+.---|..+|.|.+|...-..+-|+.
T Consensus 402 ~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~ 479 (877)
T KOG1969|consen 402 AAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLRPFAEIIAFVPPSQSRLVERLNE 479 (877)
T ss_pred HHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhcccceEEEEecCCChhHHHHHHHH
Confidence 445555555541 10 00 02357888886 44577754335889999999999999999999
Q ss_pred HHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Q 002045 564 HTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFRE 606 (976)
Q Consensus 564 ~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~ 606 (976)
.+...+...+...+..|++.+.+ ||++.++.....+...
T Consensus 480 IC~rE~mr~d~~aL~~L~el~~~----DIRsCINtLQfLa~~~ 518 (877)
T KOG1969|consen 480 ICHRENMRADSKALNALCELTQN----DIRSCINTLQFLASNV 518 (877)
T ss_pred HHhhhcCCCCHHHHHHHHHHhcc----hHHHHHHHHHHHHHhc
Confidence 99999999998888888888775 8998888777666553
No 233
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.16 E-value=4.9e-10 Score=125.56 Aligned_cols=177 Identities=16% Similarity=0.229 Sum_probs=119.9
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC---CcEEEEEecchh
Q 002045 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG---QKVSFYMRKGAD 453 (976)
Q Consensus 377 ~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~---~~~~~~~~~~~~ 453 (976)
+|++|+|++.+++.|...+.. + ..+..+||+||+|+|||++|+++|+.+.+.. ....++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-----------~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-----------N-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-----------C-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 588999999999999888754 1 4456789999999999999999999875431 112232222210
Q ss_pred HHhhhHhHHHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCC
Q 002045 454 VLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~----~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~ 529 (976)
+... .-..++.+.+.+. .+...|++||++|.+ .....+.|+..++. ...++++|.+|+.
T Consensus 70 --~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-----------~~~a~naLLK~LEe--pp~~t~~il~~~~ 132 (313)
T PRK05564 70 --KKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-----------TEQAQNAFLKTIEE--PPKGVFIILLCEN 132 (313)
T ss_pred --CCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhc-----------CHHHHHHHHHHhcC--CCCCeEEEEEeCC
Confidence 0001 1122444444332 233459999999888 34566789999985 3445666666677
Q ss_pred ccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCH
Q 002045 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCG 589 (976)
Q Consensus 530 ~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~ 589 (976)
++.+-+.+++ |+ ..++|+.|+.++...++...+. ..+...+..++..+.|-.+
T Consensus 133 ~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 133 LEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPG 185 (313)
T ss_pred hHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHH
Confidence 8899999998 66 6899999999998888876543 2345556667777766433
No 234
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.16 E-value=2.7e-10 Score=127.01 Aligned_cols=166 Identities=25% Similarity=0.314 Sum_probs=106.9
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC--CcEEEEEe--
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG--QKVSFYMR-- 449 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~--~~~~~~~~-- 449 (976)
+...|.+|+|++++|..|.-.+..| ...+|||.|++|||||++|++++..+.... ...+|...
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 4568999999999999998776553 235899999999999999999998885321 01112100
Q ss_pred c----chhHHhhh-------------------HhHHHHHH------HHHHHHH---------HhcCCcEEEEccccccCC
Q 002045 450 K----GADVLSKW-------------------VGEAERQL------KLLFEEA---------QRNQPSIIFFDEIDGLAP 491 (976)
Q Consensus 450 ~----~~~l~~~~-------------------~g~~~~~l------~~~f~~a---------~~~~p~VL~iDEid~L~~ 491 (976)
+ ++.+.... .|.++..+ ...|... ......+||||||+.|.
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~- 157 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD- 157 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC-
Confidence 0 00000000 01111111 1111111 01123599999999883
Q ss_pred CCCChhhhhHHHHHHHHHHHhhccC-----------CCCcEEEEecCCCcc-ccchhhcCCCCCccccCCCCCC-HHHHH
Q 002045 492 VRSSKQEQIHNSIVSTLLALMDGLD-----------SRGQVVLIGATNRVD-AIDGALRRPGRFDREFNFPLPG-CEARA 558 (976)
Q Consensus 492 ~r~~~~~~~~~~~~~~Ll~~ld~~~-----------~~~~vivI~atn~~~-~ld~aL~r~gRf~~~i~~~~P~-~~er~ 558 (976)
..++..|+..|+.-. ...++++|++.|..+ .+.++|.. ||...+.+..|+ .+.+.
T Consensus 158 ----------~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~ 225 (350)
T CHL00081 158 ----------DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRV 225 (350)
T ss_pred ----------HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHH
Confidence 456777888775311 124688888888765 48899998 999999999997 59999
Q ss_pred HHHHHHH
Q 002045 559 EILDIHT 565 (976)
Q Consensus 559 ~Il~~~l 565 (976)
+|++...
T Consensus 226 ~il~~~~ 232 (350)
T CHL00081 226 KIVEQRT 232 (350)
T ss_pred HHHHhhh
Confidence 9998743
No 235
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.13 E-value=1.4e-10 Score=130.79 Aligned_cols=149 Identities=18% Similarity=0.210 Sum_probs=96.7
Q ss_pred CCceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHHHHH
Q 002045 703 RPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHE 782 (976)
Q Consensus 703 ~~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~~~ 782 (976)
++++||+||||||||++|+++|+++ +..+..++.+.+- ....+..++... ..++||||||||.+.....+
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l-~~~~~~~~~~~~~-------~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~~e 120 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEM-GVNIRITSGPALE-------KPGDLAAILTNL--EEGDVLFIDEIHRLSPVVEE 120 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHh-CCCeEEEeccccc-------ChHHHHHHHHhc--ccCCEEEEecHhhcchHHHH
Confidence 3579999999999999999999998 5666655543221 122355555543 34689999999998765444
Q ss_pred HHHHHHHHHHhhCC----------------CCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHH
Q 002045 783 QLRAVLLTLLEELP----------------SHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLI 846 (976)
Q Consensus 783 ~~~~~l~~ll~~~~----------------~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l 846 (976)
.+. ..|+... .-.++.+|++||++ ..+++.+..+| ..++.|++|+.+++.+|++..+
T Consensus 121 ~l~----~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~-~~l~~~L~sRf--~~~~~l~~~~~~e~~~il~~~~ 193 (328)
T PRK00080 121 ILY----PAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRA-GLLTSPLRDRF--GIVQRLEFYTVEELEKIVKRSA 193 (328)
T ss_pred HHH----HHHHhcceeeeeccCccccceeecCCCceEEeecCCc-ccCCHHHHHhc--CeeeecCCCCHHHHHHHHHHHH
Confidence 433 3332210 01246788888887 56666222333 3678899999999999999887
Q ss_pred HHHHhhhhccCCCCCCCCCCCCCCCCCCCCC
Q 002045 847 EAAVSVVLEGRSKKPQESVSLPELPKVPTVE 877 (976)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~ 877 (976)
.. .....++..+..|+..+.+.
T Consensus 194 ~~---------~~~~~~~~~~~~ia~~~~G~ 215 (328)
T PRK00080 194 RI---------LGVEIDEEGALEIARRSRGT 215 (328)
T ss_pred HH---------cCCCcCHHHHHHHHHHcCCC
Confidence 73 12223333456666666443
No 236
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=6.9e-11 Score=138.70 Aligned_cols=89 Identities=25% Similarity=0.320 Sum_probs=71.7
Q ss_pred HHHHHhCCCCcccccc-CCCCCCccccccccccccccccccccCCCCCccccccCCCCCcccccccCCCCcCCCCCcccc
Q 002045 55 QIARMFGPGKRTVRTS-NKNSVPLNLRRSTRKRRISVNLEDYTDSSGSEDEDLMRPSYRPLRNRMRNNMSQDELSPSKRK 133 (976)
Q Consensus 55 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (976)
-|+++||++||++|+. +.++..+++||++||+....|.++..++ ||+| |+...|. ++.++.+......
T Consensus 1625 sfsevlkrskkeeraia~~kPd~krvrrtsrrdsDqengSdnreS--mede-------RnagdRa--se~qesl~iR~dd 1693 (3015)
T KOG0943|consen 1625 SFSEVLKRSKKEERAIAPLKPDPKRVRRTSRRDSDQENGSDNRES--MEDE-------RNAGDRA--SEIQESLPIRGDD 1693 (3015)
T ss_pred hHHHHHhhhhhhhccccCCCCCcchhccccccccccccCcccchh--hhhh-------cChhhhh--hhhhhcccccCCc
Confidence 4789999999999999 9999999999999999999999999887 7787 6666653 5667767777777
Q ss_pred ccccCCCCCCcCCCCCCCcch
Q 002045 134 KVVEAKPTPRREGLRPRRSMV 154 (976)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~ 154 (976)
..++..++|+|+.+-..+...
T Consensus 1694 eaqd~iptprrrrllsgnttn 1714 (3015)
T KOG0943|consen 1694 EAQDDIPTPRRRRLLSGNTTN 1714 (3015)
T ss_pred cccccCCCchhhhhccCCccC
Confidence 777777788876665554333
No 237
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.13 E-value=1.4e-10 Score=127.22 Aligned_cols=137 Identities=17% Similarity=0.185 Sum_probs=92.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhh--hHhHHHH----------HHHHHHHHHHhcCCc
Q 002045 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSK--WVGEAER----------QLKLLFEEAQRNQPS 479 (976)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~--~~g~~~~----------~l~~~f~~a~~~~p~ 479 (976)
..++|||.||||||||++|+.+|..++ .+++.+++...+.. ++|...- .....+-.|.. .++
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~-----~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~ 136 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLN-----WPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNV 136 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHC-----CCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCe
Confidence 356899999999999999999999997 44455554433322 3332111 01122333332 357
Q ss_pred EEEEccccccCCCCCChhhhhHHHHHHHHHHHhhc------------cCCCCcEEEEecCCCcc------------ccch
Q 002045 480 IIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDG------------LDSRGQVVLIGATNRVD------------AIDG 535 (976)
Q Consensus 480 VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~------------~~~~~~vivI~atn~~~------------~ld~ 535 (976)
+|++||++..- ..++..|..+|+. +.....+.||+|+|+.+ .++.
T Consensus 137 illlDEin~a~-----------p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~ 205 (327)
T TIGR01650 137 ALCFDEYDAGR-----------PDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQ 205 (327)
T ss_pred EEEechhhccC-----------HHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCH
Confidence 89999999773 3344455555441 11234688999999865 2689
Q ss_pred hhcCCCCCccccCCCCCCHHHHHHHHHHHHhc
Q 002045 536 ALRRPGRFDREFNFPLPGCEARAEILDIHTRK 567 (976)
Q Consensus 536 aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~ 567 (976)
+++. ||..++.+++|+.++-.+|+......
T Consensus 206 A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 206 AQMD--RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred HHHh--heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 9998 99888899999999999999876543
No 238
>PRK06893 DNA replication initiation factor; Validated
Probab=99.12 E-value=1.5e-10 Score=123.65 Aligned_cols=131 Identities=15% Similarity=0.204 Sum_probs=82.0
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAH 781 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~~ 781 (976)
+.++|+||||||||||+.|+|+++. +..+..+..... ......++..++ ...+|+||||+.+.+...
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~---------~~~~~~~~~~~~--~~dlLilDDi~~~~~~~~ 108 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS---------QYFSPAVLENLE--QQDLVCLDDLQAVIGNEE 108 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh---------hhhhHHHHhhcc--cCCEEEEeChhhhcCChH
Confidence 4589999999999999999999852 223343332211 111123344333 347999999999864321
Q ss_pred HHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCc---CCCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 782 EQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVE---GDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 782 ~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld---~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
....|..+++.+......+||.|+|.++..++ +.+++++.+..++.+..|+.++|.+||+..+.
T Consensus 109 --~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~ 175 (229)
T PRK06893 109 --WELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAY 175 (229)
T ss_pred --HHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHH
Confidence 11234445544432333334445555446665 34555555557999999999999999998876
No 239
>PRK04195 replication factor C large subunit; Provisional
Probab=99.12 E-value=1.1e-10 Score=138.23 Aligned_cols=131 Identities=16% Similarity=0.216 Sum_probs=90.3
Q ss_pred CCceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHh------cCCceEeccccchh
Q 002045 703 RPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARR------TTPSILYIPQFNLW 776 (976)
Q Consensus 703 ~~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~------~~p~ilfiDEid~l 776 (976)
++.+||+||||||||++|+++|+++ +..++.++.++... ...+..+...+.. ..+.||+|||+|.+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el-~~~~ielnasd~r~-------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L 110 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY-GWEVIELNASDQRT-------ADVIERVAGEAATSGSLFGARRKLILLDEVDGI 110 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc-CCCEEEEccccccc-------HHHHHHHHHHhhccCcccCCCCeEEEEecCccc
Confidence 3579999999999999999999998 78888888654321 2234444443332 24679999999998
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHHH
Q 002045 777 WENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (976)
Q Consensus 777 ~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~~ 848 (976)
...........|+.+++. ....||+++|.+ ..+.. ..+++...++.|++|+..++..+++.++..
T Consensus 111 ~~~~d~~~~~aL~~~l~~----~~~~iIli~n~~-~~~~~--k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~ 175 (482)
T PRK04195 111 HGNEDRGGARAILELIKK----AKQPIILTANDP-YDPSL--RELRNACLMIEFKRLSTRSIVPVLKRICRK 175 (482)
T ss_pred ccccchhHHHHHHHHHHc----CCCCEEEeccCc-cccch--hhHhccceEEEecCCCHHHHHHHHHHHHHH
Confidence 764333344556666652 122344566766 33433 344443478899999999999999988873
No 240
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.12 E-value=3.8e-10 Score=126.10 Aligned_cols=149 Identities=18% Similarity=0.221 Sum_probs=95.4
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHEQ 783 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~~~~ 783 (976)
.++||+||||||||++|+++|+++ +.++..+..+.+.. ...+..++... ..+.|||||||+.+.....+.
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~~~-~~~~~~~~~~~~~~-------~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~~e~ 100 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANEM-GVNLKITSGPALEK-------PGDLAAILTNL--EEGDVLFIDEIHRLSPAVEEL 100 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh-CCCEEEeccchhcC-------chhHHHHHHhc--ccCCEEEEehHhhhCHHHHHH
Confidence 469999999999999999999998 55665554332221 11233333332 346899999999988655444
Q ss_pred HHHHHHHHHhhCC----------------CCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 784 LRAVLLTLLEELP----------------SHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 784 ~~~~l~~ll~~~~----------------~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
+ ..+|.... .-.++++|++||++ ..+++ +.+-++..++.|.+|+.+++.+|++..+.
T Consensus 101 l----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~-~~l~~--~l~sR~~~~~~l~~l~~~e~~~il~~~~~ 173 (305)
T TIGR00635 101 L----YPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA-GMLTS--PLRDRFGIILRLEFYTVEELAEIVSRSAG 173 (305)
T ss_pred h----hHHHhhhheeeeeccCccccceeecCCCeEEEEecCCc-cccCH--HHHhhcceEEEeCCCCHHHHHHHHHHHHH
Confidence 3 33332111 12347788888888 66776 33333346788999999999999998876
Q ss_pred HHHhhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 002045 848 AAVSVVLEGRSKKPQESVSLPELPKVPTVES 878 (976)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~dl~~La~~~~~~s 878 (976)
. .....++..+..|+..+.+..
T Consensus 174 ~---------~~~~~~~~al~~ia~~~~G~p 195 (305)
T TIGR00635 174 L---------LNVEIEPEAALEIARRSRGTP 195 (305)
T ss_pred H---------hCCCcCHHHHHHHHHHhCCCc
Confidence 3 112223344556666664443
No 241
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.11 E-value=1.4e-10 Score=130.13 Aligned_cols=143 Identities=16% Similarity=0.256 Sum_probs=109.9
Q ss_pred CCceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCccccc-CCCCCChHHHHHHHHHHHH--------------------
Q 002045 703 RPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLS-DPSAKTPEEALVHIFGEAR-------------------- 761 (976)
Q Consensus 703 ~~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~-~~~~g~~e~~~~~~f~~a~-------------------- 761 (976)
|.++||+||||||||++|+++|..+ +.+|+.+++..+.. +|.+.+.+..++.+|..|.
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l-~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae 125 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAE 125 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh-CCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4689999999999999999999998 79999999988874 6644477888887777660
Q ss_pred --------------------------------------------------------------------------------
Q 002045 762 -------------------------------------------------------------------------------- 761 (976)
Q Consensus 762 -------------------------------------------------------------------------------- 761 (976)
T Consensus 126 ~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (441)
T TIGR00390 126 ERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLG 205 (441)
T ss_pred HHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhc
Confidence
Q ss_pred ---------------------------------------hcCCceEeccccchhHHH--------HHHHHHHHHHHHHhh
Q 002045 762 ---------------------------------------RTTPSILYIPQFNLWWEN--------AHEQLRAVLLTLLEE 794 (976)
Q Consensus 762 ---------------------------------------~~~p~ilfiDEid~l~~~--------~~~~~~~~l~~ll~~ 794 (976)
...-+||||||||+++.. ..+.+.+.|+.+|.+
T Consensus 206 ~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEG 285 (441)
T TIGR00390 206 GQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEG 285 (441)
T ss_pred CCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccC
Confidence 124579999999999843 234577788888876
Q ss_pred CC--------CCCCEEEEEecC----CCcccCcCCCCCCcCCccEEEecCCCHHHHHHHH----HHHHHHH
Q 002045 795 LP--------SHLPILLLGSSS----VPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFL----GRLIEAA 849 (976)
Q Consensus 795 ~~--------~~~~v~vi~ttn----~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~----~~~l~~~ 849 (976)
-. +..+|++||+.- .| .+|-|.+.++|+ .++.+..++.++..+|| ..+++.+
T Consensus 286 t~v~~k~~~v~T~~ILFI~~GAF~~~kp-~DlIPEl~GR~P--i~v~L~~L~~edL~rILteP~nsLikQy 353 (441)
T TIGR00390 286 STVNTKYGMVKTDHILFIAAGAFQLAKP-SDLIPELQGRFP--IRVELQALTTDDFERILTEPKNSLIKQY 353 (441)
T ss_pred ceeeecceeEECCceeEEecCCcCCCCh-hhccHHHhCccc--eEEECCCCCHHHHHHHhcCChhHHHHHH
Confidence 31 257888888754 34 445556888888 78889999999999999 4455543
No 242
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.11 E-value=6.4e-10 Score=115.12 Aligned_cols=148 Identities=22% Similarity=0.250 Sum_probs=101.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhc---------------------CCcEEEEEecchhHHhhhHhHHHHHHHHH
Q 002045 411 TPPRGVLLCGPPGTGKTLIARALACAASKA---------------------GQKVSFYMRKGADVLSKWVGEAERQLKLL 469 (976)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~---------------------~~~~~~~~~~~~~l~~~~~g~~~~~l~~~ 469 (976)
..+..+||+||+|+|||++|+++++.+... .....++...+.. . ....++.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~-----~--~~~~i~~i 84 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQS-----I--KVDQVREL 84 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCc-----C--CHHHHHHH
Confidence 345679999999999999999999998542 0112222221111 1 11334444
Q ss_pred HHHHHh----cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCccccchhhcCCCCCcc
Q 002045 470 FEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDR 545 (976)
Q Consensus 470 f~~a~~----~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~ 545 (976)
.+.+.. ....||||||+|.|. ...++.|+..|+.. ....++|.+|+.+..+.+++++ |+ .
T Consensus 85 ~~~~~~~~~~~~~kviiide~~~l~-----------~~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~-~ 148 (188)
T TIGR00678 85 VEFLSRTPQESGRRVVIIEDAERMN-----------EAAANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RC-Q 148 (188)
T ss_pred HHHHccCcccCCeEEEEEechhhhC-----------HHHHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hc-E
Confidence 444433 335699999999884 34566788888863 3345566666677889999988 66 5
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCC
Q 002045 546 EFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGY 587 (976)
Q Consensus 546 ~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~ 587 (976)
.+.|++|+.++..+++... + ++.+.+..++..+.|-
T Consensus 149 ~~~~~~~~~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 149 VLPFPPLSEEALLQWLIRQ----G--ISEEAAELLLALAGGS 184 (188)
T ss_pred EeeCCCCCHHHHHHHHHHc----C--CCHHHHHHHHHHcCCC
Confidence 8999999999999998776 2 4566777788777763
No 243
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.10 E-value=2.4e-10 Score=128.22 Aligned_cols=143 Identities=17% Similarity=0.231 Sum_probs=110.1
Q ss_pred CCceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCccccc-CCCCC-ChHHHHHHHHHHHH-------------------
Q 002045 703 RPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLS-DPSAK-TPEEALVHIFGEAR------------------- 761 (976)
Q Consensus 703 ~~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~-~~~~g-~~e~~~~~~f~~a~------------------- 761 (976)
+.++||+||||||||++|++||..+ +.+|+.+++..+.. +| +| ..+..++.+|..|.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l-~~~fi~vD~t~f~e~Gy-vG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~ 127 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEATKFTEVGY-VGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAA 127 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh-CChheeecchhhccCCc-ccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999998 89999999988875 56 55 66777777777771
Q ss_pred --------------------------------------------------------------------------------
Q 002045 762 -------------------------------------------------------------------------------- 761 (976)
Q Consensus 762 -------------------------------------------------------------------------------- 761 (976)
T Consensus 128 e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (443)
T PRK05201 128 EERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLG 207 (443)
T ss_pred HHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhC
Confidence
Q ss_pred ---------------------------------------hcCCceEeccccchhHHH--------HHHHHHHHHHHHHhh
Q 002045 762 ---------------------------------------RTTPSILYIPQFNLWWEN--------AHEQLRAVLLTLLEE 794 (976)
Q Consensus 762 ---------------------------------------~~~p~ilfiDEid~l~~~--------~~~~~~~~l~~ll~~ 794 (976)
...-+||||||||+++.. .++.+.+.|+.+|.+
T Consensus 208 ~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG 287 (443)
T PRK05201 208 PKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEG 287 (443)
T ss_pred CCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEcchhhcccCCCCCCCCCccchhccccccccc
Confidence 013469999999999843 124577788888876
Q ss_pred C--------CCCCCEEEEEecC----CCcccCcCCCCCCcCCccEEEecCCCHHHHHHHH----HHHHHHHH
Q 002045 795 L--------PSHLPILLLGSSS----VPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFL----GRLIEAAV 850 (976)
Q Consensus 795 ~--------~~~~~v~vi~ttn----~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~----~~~l~~~~ 850 (976)
- =+...|++||+.- .| .+|-|.+.++|+ .++.+..++.++..+|| ..+++.+.
T Consensus 288 ~~v~~k~~~i~T~~ILFI~~GAF~~~kp-~DlIPEl~GR~P--i~v~L~~L~~~dL~~ILteP~nsLikQy~ 356 (443)
T PRK05201 288 STVSTKYGMVKTDHILFIASGAFHVSKP-SDLIPELQGRFP--IRVELDALTEEDFVRILTEPKASLIKQYQ 356 (443)
T ss_pred ceeeecceeEECCceeEEecCCcCCCCh-hhccHHHhCccc--eEEECCCCCHHHHHHHhcCChhHHHHHHH
Confidence 2 1257888888753 34 445556888888 78889999999999999 44666443
No 244
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.09 E-value=6.6e-10 Score=124.13 Aligned_cols=159 Identities=28% Similarity=0.329 Sum_probs=100.9
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhh-------cCC---cEE-
Q 002045 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASK-------AGQ---KVS- 445 (976)
Q Consensus 377 ~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~-------~~~---~~~- 445 (976)
.|..|+|++.+|..|.-.+..| ...+++|.|+||+|||+++++++..+.. ... .-+
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 4778999999998886554432 2458999999999999999999988721 000 000
Q ss_pred EEEecch-------------------hHHh-----hhHhHH--HHHH--------HHHHHHHHhcCCcEEEEccccccCC
Q 002045 446 FYMRKGA-------------------DVLS-----KWVGEA--ERQL--------KLLFEEAQRNQPSIIFFDEIDGLAP 491 (976)
Q Consensus 446 ~~~~~~~-------------------~l~~-----~~~g~~--~~~l--------~~~f~~a~~~~p~VL~iDEid~L~~ 491 (976)
++..+|. ++.. ..+|.. ...+ ..++..+ ...+|||||++.|
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A---~~GvL~lDEi~~L-- 143 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA---NRGILYIDEVNLL-- 143 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec---cCCEEEecChHhC--
Confidence 0000000 0000 111211 0000 0112222 2349999999987
Q ss_pred CCCChhhhhHHHHHHHHHHHhhccC-----------CCCcEEEEecCCCcc-ccchhhcCCCCCccccCCCCCCH-HHHH
Q 002045 492 VRSSKQEQIHNSIVSTLLALMDGLD-----------SRGQVVLIGATNRVD-AIDGALRRPGRFDREFNFPLPGC-EARA 558 (976)
Q Consensus 492 ~r~~~~~~~~~~~~~~Ll~~ld~~~-----------~~~~vivI~atn~~~-~ld~aL~r~gRf~~~i~~~~P~~-~er~ 558 (976)
...++..|+..|+.-. ...++++|+++|..+ .+.++|.. ||...+.++.|.. +++.
T Consensus 144 ---------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~ 212 (337)
T TIGR02030 144 ---------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRV 212 (337)
T ss_pred ---------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHH
Confidence 3557777888875321 123678888888755 58899999 9999999999875 8889
Q ss_pred HHHHHH
Q 002045 559 EILDIH 564 (976)
Q Consensus 559 ~Il~~~ 564 (976)
+|++..
T Consensus 213 eIL~~~ 218 (337)
T TIGR02030 213 EIVERR 218 (337)
T ss_pred HHHHhh
Confidence 999774
No 245
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.09 E-value=7.2e-11 Score=134.80 Aligned_cols=65 Identities=28% Similarity=0.464 Sum_probs=61.4
Q ss_pred ccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 912 YDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 912 ~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
.....++|..+++...+|+||.+|+.||||.||++||..+.|.|+++|..|++|||.||+.||.|
T Consensus 162 ~~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~ 226 (371)
T COG5076 162 GRFLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGP 226 (371)
T ss_pred ccccccccccCCccccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCC
Confidence 35557789999999999999999999999999999999999999999999999999999999975
No 246
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.08 E-value=2.2e-10 Score=119.79 Aligned_cols=131 Identities=21% Similarity=0.274 Sum_probs=93.2
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHEQ 783 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~~~~ 783 (976)
-++||+||||.|||+||..||+++ +.++...+.+.|- +. | .+..++...+. .+|||||||+.+.+.+.+-
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA~Em-gvn~k~tsGp~le-K~--g----DlaaiLt~Le~--~DVLFIDEIHrl~~~vEE~ 122 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIANEL-GVNLKITSGPALE-KP--G----DLAAILTNLEE--GDVLFIDEIHRLSPAVEEV 122 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHHHHh-cCCeEeccccccc-Ch--h----hHHHHHhcCCc--CCeEEEehhhhcChhHHHH
Confidence 379999999999999999999999 7888877766554 21 2 46666665443 4799999999998876665
Q ss_pred HHHHHH-HHHhhC----CC-------CCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 784 LRAVLL-TLLEEL----PS-------HLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 784 ~~~~l~-~ll~~~----~~-------~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
+.-++. ..|+-+ ++ -.+.-+||||.+. -.|.. ..+=++..+..+..++.++..+|++.--.
T Consensus 123 LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~-G~lt~--PLrdRFGi~~rlefY~~~eL~~Iv~r~a~ 195 (332)
T COG2255 123 LYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRA-GMLTN--PLRDRFGIIQRLEFYTVEELEEIVKRSAK 195 (332)
T ss_pred hhhhhhheeEEEEEccCCccceEeccCCCeeEeeecccc-ccccc--hhHHhcCCeeeeecCCHHHHHHHHHHHHH
Confidence 544442 223322 11 1255678888887 56665 44444458888999999999999886553
No 247
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.08 E-value=3.7e-10 Score=133.10 Aligned_cols=136 Identities=20% Similarity=0.219 Sum_probs=94.2
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc----CCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH-
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE----KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN- 779 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~----~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~- 779 (976)
.|+|||++|||||||+.+|++++. +..++++.+.+++..+. ..........|..... .++||+||+|+.+...
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~-~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFI-NSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE 393 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHH-HHHHhccHHHHHHHhh-cCCEEEEehhccccCCH
Confidence 389999999999999999999863 45678888777665431 1111111122333222 3689999999998753
Q ss_pred -HHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccC---cCCCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 780 -AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEV---EGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 780 -~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~L---d~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
.+..++.+|+.+.+. + .-+ |.|+|.++..| ++.+.++|.+..++.+..|+.+.|..||+..+.
T Consensus 394 ~tqeeLF~l~N~l~e~---g-k~I-IITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 394 STQEEFFHTFNTLHNA---N-KQI-VLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred HHHHHHHHHHHHHHhc---C-CCE-EEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 345566666665532 2 223 34777765554 446778888789999999999999999998876
No 248
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.08 E-value=6.6e-10 Score=119.07 Aligned_cols=126 Identities=20% Similarity=0.303 Sum_probs=88.6
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCC--eeecCCcccccCCCCCChHHHHHHHHHHHHh-----cCCceEeccccchh
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFP--VHSLGLPALLSDPSAKTPEEALVHIFGEARR-----TTPSILYIPQFNLW 776 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~--~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~-----~~p~ilfiDEid~l 776 (976)
|+++|.||||||||+||+.|+.....-. |+.++. .......++.+|+.|+. ..-.|||||||+.+
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSA--------t~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF 234 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSA--------TNAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF 234 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEec--------cccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh
Confidence 5799999999999999999999863322 444442 22334578999998875 23469999999997
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 777 WENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 777 ~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
-...++. +|--++.+..++|-|||.+|.-.|.. +.+-+ -.||.+...+..+...||.+-+.
T Consensus 235 NksQQD~-------fLP~VE~G~I~lIGATTENPSFqln~--aLlSR-C~VfvLekL~~n~v~~iL~raia 295 (554)
T KOG2028|consen 235 NKSQQDT-------FLPHVENGDITLIGATTENPSFQLNA--ALLSR-CRVFVLEKLPVNAVVTILMRAIA 295 (554)
T ss_pred hhhhhhc-------ccceeccCceEEEecccCCCccchhH--HHHhc-cceeEeccCCHHHHHHHHHHHHH
Confidence 7655543 55556666666666677777444544 43333 35776788888998888887665
No 249
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.07 E-value=1.1e-08 Score=124.95 Aligned_cols=136 Identities=21% Similarity=0.244 Sum_probs=85.0
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCc------ccccCCCCCC--hHHHHH-HHHHHHHhcCCceEeccccc
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLP------ALLSDPSAKT--PEEALV-HIFGEARRTTPSILYIPQFN 774 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~------~l~~~~~~g~--~e~~~~-~~f~~a~~~~p~ilfiDEid 774 (976)
+++||-|.||+|||.|..|+|+.. |-.+++|+++ +|++.+..++ .+-... .-|-.|.+.+..| ++||+.
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~t-G~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WV-lLDEiN 1621 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKT-GKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWV-LLDEIN 1621 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHh-cCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEE-Eeehhh
Confidence 469999999999999999999997 7789998876 3455444333 111222 2356666666555 599998
Q ss_pred hhHHHHHHHHHHHHHHHHhhC-----CC-------CCCEEEEEecCCCcccCcCCCC---CCcCCc-cEEEecCCCHHHH
Q 002045 775 LWWENAHEQLRAVLLTLLEEL-----PS-------HLPILLLGSSSVPLAEVEGDPS---TVFPLR-SVYQVEKPSTEDR 838 (976)
Q Consensus 775 ~l~~~~~~~~~~~l~~ll~~~-----~~-------~~~v~vi~ttn~~~~~Ld~~~~---~~~~~r-~~i~v~~P~~~er 838 (976)
... ..++.-|+.+|+-- +. ..+..|.||-| | ..---++. .-|--| .++++...+..+.
T Consensus 1622 LaS----QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqN-P-q~qggGRKgLPkSF~nRFsvV~~d~lt~dDi 1695 (4600)
T COG5271 1622 LAS----QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQN-P-QDQGGGRKGLPKSFLNRFSVVKMDGLTTDDI 1695 (4600)
T ss_pred hhH----HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecC-c-hhcCCCcccCCHHHhhhhheEEecccccchH
Confidence 744 44555566777531 11 23455666655 4 22111122 112223 5777888988888
Q ss_pred HHHHHHHHH
Q 002045 839 SLFLGRLIE 847 (976)
Q Consensus 839 ~~i~~~~l~ 847 (976)
..|...+..
T Consensus 1696 ~~Ia~~~yp 1704 (4600)
T COG5271 1696 THIANKMYP 1704 (4600)
T ss_pred HHHHHhhCC
Confidence 888876654
No 250
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.3e-09 Score=115.31 Aligned_cols=221 Identities=22% Similarity=0.312 Sum_probs=138.1
Q ss_pred Cccc-ccChHHHHHHHHHHHHcccCChhHHhhcC---C-CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecc
Q 002045 377 SFDD-IGGLSEYIDALKEMVFFPLLYPDFFASYH---I-TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (976)
Q Consensus 377 ~~~~-i~G~~~~k~~l~~~v~~pl~~~~~~~~~~---~-~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~ 451 (976)
.+++ ++|++.+|+.|-=+|.. .|..+..... + -..++|||.||+|||||+||+.+|+.+. ++|...++
T Consensus 58 ~Ld~YVIGQe~AKKvLsVAVYN--HYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~Ln-----VPFaiADA 130 (408)
T COG1219 58 HLDEYVIGQEQAKKVLSVAVYN--HYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILN-----VPFAIADA 130 (408)
T ss_pred Hhhhheecchhhhceeeeeehh--HHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhC-----CCeeeccc
Confidence 3555 78999888877554433 2333322110 1 1246999999999999999999999995 99988888
Q ss_pred hhHHh-hhHhHH-HHHHHHHHHHHH----hcCCcEEEEccccccCCCCCCh---hhhhHHHHHHHHHHHhhccCC-----
Q 002045 452 ADVLS-KWVGEA-ERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDS----- 517 (976)
Q Consensus 452 ~~l~~-~~~g~~-~~~l~~~f~~a~----~~~p~VL~iDEid~L~~~r~~~---~~~~~~~~~~~Ll~~ld~~~~----- 517 (976)
..+.. .|+|+- +..+..++..+. +....||+|||||.++.+..+. .+-....++..||..+++...
T Consensus 131 TtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPq 210 (408)
T COG1219 131 TTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQ 210 (408)
T ss_pred cchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCC
Confidence 88764 688864 444455554432 2234599999999998654322 122345688899999987421
Q ss_pred --------------CCcEEEEecCCCc-------------------------c----------c---------cchhhcC
Q 002045 518 --------------RGQVVLIGATNRV-------------------------D----------A---------IDGALRR 539 (976)
Q Consensus 518 --------------~~~vivI~atn~~-------------------------~----------~---------ld~aL~r 539 (976)
+.++++|+..-.. . . |-|.|
T Consensus 211 GGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEf-- 288 (408)
T COG1219 211 GGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEF-- 288 (408)
T ss_pred CCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHH--
Confidence 1133333321000 0 0 11222
Q ss_pred CCCCccccCCCCCCHHHHHHHHHH----HHhc---------CCCCCCHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHHH
Q 002045 540 PGRFDREFNFPLPGCEARAEILDI----HTRK---------WKQPPSRELKSELAASC--VGYCGADLKALCTEAAIRAF 604 (976)
Q Consensus 540 ~gRf~~~i~~~~P~~~er~~Il~~----~l~~---------~~~~~~~~~l~~lA~~t--~G~s~~dI~~l~~~A~~~a~ 604 (976)
-||++.+..+...+.+++.+||.. +.++ ..+.+..+.+..+|... .+--++-|+.++....+..+
T Consensus 289 IGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~lld~M 368 (408)
T COG1219 289 IGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSIIEELLLDVM 368 (408)
T ss_pred hcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 248888888888999999998841 1111 23455677777777643 33345567777777666555
Q ss_pred Hh
Q 002045 605 RE 606 (976)
Q Consensus 605 ~~ 606 (976)
-+
T Consensus 369 fe 370 (408)
T COG1219 369 FE 370 (408)
T ss_pred hh
Confidence 54
No 251
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.06 E-value=7.2e-10 Score=128.77 Aligned_cols=135 Identities=21% Similarity=0.244 Sum_probs=87.4
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc----CCCeeecCCcccccCCCCCChH-HHHHHHHHHHHhcCCceEeccccchhHHH
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE----KFPVHSLGLPALLSDPSAKTPE-EALVHIFGEARRTTPSILYIPQFNLWWEN 779 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~----~~~~~~~~~~~l~~~~~~g~~e-~~~~~~f~~a~~~~p~ilfiDEid~l~~~ 779 (976)
.++|+||+|||||||++++++++. +..++.+++.+++..+ ..... ..+..+....+ .+.+|+||||+.+.+.
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDF-VNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGK 214 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHH-HHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCC
Confidence 589999999999999999999863 3567777766554322 11000 01112222222 2579999999998753
Q ss_pred --HHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCc---CCCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 780 --AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVE---GDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 780 --~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld---~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
.+..+...|..+.+ ....+|| |+|.++..|+ +.+.+++.+..++.|++|+.++|..|++..+.
T Consensus 215 ~~~~~~l~~~~n~~~~----~~~~iii-ts~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~ 282 (405)
T TIGR00362 215 ERTQEEFFHTFNALHE----NGKQIVL-TSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAE 282 (405)
T ss_pred HHHHHHHHHHHHHHHH----CCCCEEE-ecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 33444544544443 2234455 4555445554 45666666557899999999999999998887
No 252
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.05 E-value=1.4e-09 Score=123.59 Aligned_cols=146 Identities=24% Similarity=0.390 Sum_probs=91.5
Q ss_pred cccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC--CcEEEEEecc----
Q 002045 378 FDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG--QKVSFYMRKG---- 451 (976)
Q Consensus 378 ~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~--~~~~~~~~~~---- 451 (976)
++++.+.+...+.+...+. ...+++|+||||||||++|+.+|..+.... ..+.++.+..
T Consensus 174 l~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 5667777777766655442 246899999999999999999999885321 2233333332
Q ss_pred hhHHhhhHhH--H----HHHHHHHHHHHHh--cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhc---------
Q 002045 452 ADVLSKWVGE--A----ERQLKLLFEEAQR--NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDG--------- 514 (976)
Q Consensus 452 ~~l~~~~~g~--~----~~~l~~~f~~a~~--~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~--------- 514 (976)
.+++..+... . ...+..++..|.. ..|+|||||||+..- ..++...++.+|+.
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan----------i~kiFGel~~lLE~~~rg~~~~v 308 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN----------LSKVFGEVMMLMEHDKRGENWSV 308 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC----------HHHhhhhhhhhccccccccccce
Confidence 2333222100 0 1122334455544 347899999998653 23444455555541
Q ss_pred -----------cCCCCcEEEEecCCCcc----ccchhhcCCCCCccccCCCC
Q 002045 515 -----------LDSRGQVVLIGATNRVD----AIDGALRRPGRFDREFNFPL 551 (976)
Q Consensus 515 -----------~~~~~~vivI~atn~~~----~ld~aL~r~gRf~~~i~~~~ 551 (976)
+....++.||+|+|..+ .+|.||+| ||. .|++.+
T Consensus 309 ~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 309 PLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred eeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 22235799999999987 69999999 884 355543
No 253
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.05 E-value=3.8e-10 Score=103.63 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=52.8
Q ss_pred ccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 916 FSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 916 ~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
..+|.+.++ ..++|+.+|+.||||.+|++||++|.|.++++|.+|+.|||.||++||.+
T Consensus 27 s~~f~~LP~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr~yN~~ 85 (110)
T cd05526 27 SDSLAELPE--LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERARRLSRT 85 (110)
T ss_pred hHHHHHCCC--cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHHHhCcc
Confidence 456776666 34677899999999999999999999999999999999999999999975
No 254
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=1.5e-09 Score=120.62 Aligned_cols=184 Identities=15% Similarity=0.145 Sum_probs=120.9
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC-------------Cc
Q 002045 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-------------QK 443 (976)
Q Consensus 377 ~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~-------------~~ 443 (976)
.|++|+|++.+++.|...+..- +.+..+||+||+|+||+++|.++|+.+.... ..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 5889999999999999988651 4467899999999999999999999985432 11
Q ss_pred EEEEEecch------hHHhhhHhH-----------HHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCChhhhhHH
Q 002045 444 VSFYMRKGA------DVLSKWVGE-----------AERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHN 502 (976)
Q Consensus 444 ~~~~~~~~~------~l~~~~~g~-----------~~~~l~~~f~~a~----~~~p~VL~iDEid~L~~~r~~~~~~~~~ 502 (976)
..++.+.+. .....+.+. .-..++.+.+.+. .+...|++||++|.| ..
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-----------~~ 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-----------NE 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-----------CH
Confidence 111221111 000000000 0123444444433 233569999999988 34
Q ss_pred HHHHHHHHHhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002045 503 SIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAA 582 (976)
Q Consensus 503 ~~~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~ 582 (976)
...+.||..|+... +.++|..|+.++.|-+.+++ |+ ..|.|++++.++..++|......... ......++.
T Consensus 139 ~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~~---~~~~~~l~~ 209 (314)
T PRK07399 139 AAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEIL---NINFPELLA 209 (314)
T ss_pred HHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccccc---hhHHHHHHH
Confidence 56778999998654 33566667788999999999 76 78999999999999999876432211 111356666
Q ss_pred HccCCCHHHH
Q 002045 583 SCVGYCGADL 592 (976)
Q Consensus 583 ~t~G~s~~dI 592 (976)
...|-.+.-+
T Consensus 210 ~a~Gs~~~al 219 (314)
T PRK07399 210 LAQGSPGAAI 219 (314)
T ss_pred HcCCCHHHHH
Confidence 6666444333
No 255
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.04 E-value=6.4e-09 Score=114.00 Aligned_cols=182 Identities=18% Similarity=0.205 Sum_probs=108.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEE---ecchhHHhhh---HhH------HH---HHHHHHH-HHHHhc
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM---RKGADVLSKW---VGE------AE---RQLKLLF-EEAQRN 476 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~---~~~~~l~~~~---~g~------~~---~~l~~~f-~~a~~~ 476 (976)
+..++|+||+|+|||++++.+++.+......+..+. .+..+++... .|. .. ..+...+ .....+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 345889999999999999999998753221111111 1112222111 111 01 1122222 223345
Q ss_pred CCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC-CCCcEEEEecCCC--ccccc----hhhcCCCCCccccCC
Q 002045 477 QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-SRGQVVLIGATNR--VDAID----GALRRPGRFDREFNF 549 (976)
Q Consensus 477 ~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~-~~~~vivI~atn~--~~~ld----~aL~r~gRf~~~i~~ 549 (976)
.+.||+|||+|.+.+ ..+..|..+.+... ....+.||.+... ...+. ..+.+ |+...+.+
T Consensus 123 ~~~vliiDe~~~l~~-----------~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~l 189 (269)
T TIGR03015 123 KRALLVVDEAQNLTP-----------ELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCHL 189 (269)
T ss_pred CCeEEEEECcccCCH-----------HHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeeeC
Confidence 677999999998741 12223322222111 1222333333322 11121 23444 77778899
Q ss_pred CCCCHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 002045 550 PLPGCEARAEILDIHTRKWK----QPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (976)
Q Consensus 550 ~~P~~~er~~Il~~~l~~~~----~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~ 608 (976)
++.+.++..+++...+...+ ..++.+.++.|+..+.|.. ..|..+|..+...+..+..
T Consensus 190 ~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~~ 251 (269)
T TIGR03015 190 GPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEEK 251 (269)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcCC
Confidence 99999999999998887543 3577888999999999986 4599999999988887643
No 256
>PRK04132 replication factor C small subunit; Provisional
Probab=99.04 E-value=2.2e-09 Score=131.51 Aligned_cols=154 Identities=21% Similarity=0.124 Sum_probs=121.2
Q ss_pred CceEEEEc--CCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhHhHHHHHHHHHHHHHHhc------CCcEEEEc
Q 002045 413 PRGVLLCG--PPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRN------QPSIIFFD 484 (976)
Q Consensus 413 ~~~vLL~G--ppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~~------~p~VL~iD 484 (976)
.-+-++.| |++.||||+|+++|+++...++...++.+++++..+. ..++.++..+... ...|+|||
T Consensus 564 ~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~KVvIID 637 (846)
T PRK04132 564 GYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFLD 637 (846)
T ss_pred chhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCEEEEEE
Confidence 33556678 9999999999999999865556678999999875321 2344444433322 23599999
Q ss_pred cccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHH
Q 002045 485 EIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIH 564 (976)
Q Consensus 485 Eid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~ 564 (976)
|+|.|. ...++.|+..|+. ..+++.+|++||.+..+.+++++ |+ ..+.|++|+.++...+|+..
T Consensus 638 EaD~Lt-----------~~AQnALLk~lEe--p~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 638 EADALT-----------QDAQQALRRTMEM--FSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred CcccCC-----------HHHHHHHHHHhhC--CCCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 999993 4567789999984 34578888999999999999998 76 78999999999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHccCCC
Q 002045 565 TRKWKQPPSRELKSELAASCVGYC 588 (976)
Q Consensus 565 l~~~~~~~~~~~l~~lA~~t~G~s 588 (976)
+...++..+++.+..++..+.|-.
T Consensus 702 ~~~Egi~i~~e~L~~Ia~~s~GDl 725 (846)
T PRK04132 702 AENEGLELTEEGLQAILYIAEGDM 725 (846)
T ss_pred HHhcCCCCCHHHHHHHHHHcCCCH
Confidence 888888888889999999988843
No 257
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.03 E-value=9.1e-09 Score=107.44 Aligned_cols=112 Identities=21% Similarity=0.125 Sum_probs=79.4
Q ss_pred CcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCC-------------ccccchhhcCCCCCc
Q 002045 478 PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR-------------VDAIDGALRRPGRFD 544 (976)
Q Consensus 478 p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~-------------~~~ld~aL~r~gRf~ 544 (976)
|.||||||+|.| .-.....|...++..- .-+||.++|+ |..+++.|+. |+
T Consensus 297 PGVLFIDEVhML-----------DiEcFTyL~kalES~i---aPivifAsNrG~~~irGt~d~~sPhGip~dllD--Rl- 359 (456)
T KOG1942|consen 297 PGVLFIDEVHML-----------DIECFTYLHKALESPI---APIVIFASNRGMCTIRGTEDILSPHGIPPDLLD--RL- 359 (456)
T ss_pred CcceEeeehhhh-----------hhHHHHHHHHHhcCCC---CceEEEecCCcceeecCCcCCCCCCCCCHHHhh--he-
Confidence 789999999987 3445555556665321 2355556665 3446777777 66
Q ss_pred cccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Q 002045 545 REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFRE 606 (976)
Q Consensus 545 ~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~ 606 (976)
.+|..-+++.++.++|+++.++..++..+++.+..|+.....-+-+-..+|+.-|...+-..
T Consensus 360 ~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~ 421 (456)
T KOG1942|consen 360 LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTN 421 (456)
T ss_pred eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHc
Confidence 46777788999999999999999999999999988888766666666666666555555443
No 258
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.03 E-value=9e-10 Score=128.37 Aligned_cols=137 Identities=20% Similarity=0.254 Sum_probs=89.5
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc----CCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH-
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE----KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN- 779 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~----~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~- 779 (976)
.++||||||||||||++++++++. +..++.+++.+++..+...-....+.. |.......+.||+|||++.+.+.
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~ 210 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKT 210 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcH
Confidence 499999999999999999999852 245677776655443210000001112 22222335889999999998643
Q ss_pred -HHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcC---CCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 780 -AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEG---DPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 780 -~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~---~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
.+..+...|..+.+ ....+|| |++.++..|.. .+.++|.+..++.|.+|+.+.|..|++..+.
T Consensus 211 ~~q~elf~~~n~l~~----~~k~iIi-tsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 211 GVQTELFHTFNELHD----SGKQIVI-CSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred HHHHHHHHHHHHHHH----cCCeEEE-ECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence 34555555555553 2234555 44444455443 5667777678999999999999999998876
No 259
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=6.6e-09 Score=116.87 Aligned_cols=152 Identities=18% Similarity=0.211 Sum_probs=106.1
Q ss_pred CcccccC-hHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC--------------
Q 002045 377 SFDDIGG-LSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-------------- 441 (976)
Q Consensus 377 ~~~~i~G-~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~-------------- 441 (976)
.|+.|+| ++.+++.|+..+.. -..+..+||+||+|+|||++|+++|+.+....
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 3677777 88899999887754 14456789999999999999999999985432
Q ss_pred -------CcEEEEEecchhHHhhhHhHHHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHH
Q 002045 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (976)
Q Consensus 442 -------~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~----~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~ 510 (976)
..+.++...+.. + .-..++.+.+.+. .+..-|+|||++|.| .....+.||.
T Consensus 71 ~~~~~~hpD~~~i~~~~~~-----i--~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-----------~~~a~NaLLK 132 (329)
T PRK08058 71 RIDSGNHPDVHLVAPDGQS-----I--KKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-----------TASAANSLLK 132 (329)
T ss_pred HHhcCCCCCEEEecccccc-----C--CHHHHHHHHHHHhhCCcccCceEEEeehHhhh-----------CHHHHHHHHH
Confidence 112222211111 0 1123444444333 223459999999988 3556778999
Q ss_pred HhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHH
Q 002045 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDI 563 (976)
Q Consensus 511 ~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~ 563 (976)
.|+. ....+++|.+|+.+..|.+.+++ |+ ..++|++|+.++..++|+.
T Consensus 133 ~LEE--Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 133 FLEE--PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HhcC--CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 9995 44566777788888899999998 66 6799999999998777754
No 260
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.99 E-value=3.9e-10 Score=103.42 Aligned_cols=43 Identities=35% Similarity=0.376 Sum_probs=40.1
Q ss_pred HhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 934 IIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 934 ~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
++-.||||+||++||++|+|.++++|++||+|||+||++||.+
T Consensus 60 k~~y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~ 102 (119)
T cd05491 60 KKFYNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDR 102 (119)
T ss_pred CeEeccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCH
Confidence 3457999999999999999999999999999999999999964
No 261
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.99 E-value=1.6e-09 Score=128.88 Aligned_cols=137 Identities=16% Similarity=0.218 Sum_probs=90.7
Q ss_pred eeeccCCCCcHhhHHHHHHHhhc---------CCCeeecCCcccccCC----------------CCCChHHHHHHHHHHH
Q 002045 706 LLLCGSEGTGVDHLGPAILHELE---------KFPVHSLGLPALLSDP----------------SAKTPEEALVHIFGEA 760 (976)
Q Consensus 706 ~Ll~G~pGtGKT~lA~aia~~l~---------~~~~~~~~~~~l~~~~----------------~~g~~e~~~~~~f~~a 760 (976)
|+|+|+||||||++++.+..+|. .+.++.|++..+...+ .++.+.+.+..+|...
T Consensus 784 LYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L 863 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQN 863 (1164)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhh
Confidence 46999999999999999987652 2557788874322110 1123445667777765
Q ss_pred Hh--cCCceEeccccchhHHHHHHHHHHHHHHHHhhCC-CCCCEEEEEecCCC--cccCcCCCCCCcCCccEEEecCCCH
Q 002045 761 RR--TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELP-SHLPILLLGSSSVP--LAEVEGDPSTVFPLRSVYQVEKPST 835 (976)
Q Consensus 761 ~~--~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~-~~~~v~vi~ttn~~--~~~Ld~~~~~~~~~r~~i~v~~P~~ 835 (976)
.. ....||+|||||.|....++ +|..++.+.. ....|+|||.+|.. +..|++.+..++.. ..+.|++++.
T Consensus 864 ~k~~r~v~IIILDEID~L~kK~QD----VLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~-eeIvF~PYTa 938 (1164)
T PTZ00112 864 KKDNRNVSILIIDEIDYLITKTQK----VLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAF-GRLVFSPYKG 938 (1164)
T ss_pred hcccccceEEEeehHhhhCccHHH----HHHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhcccc-ccccCCCCCH
Confidence 22 33579999999999875433 3444554432 35679999999864 13344444444442 3455899999
Q ss_pred HHHHHHHHHHHH
Q 002045 836 EDRSLFLGRLIE 847 (976)
Q Consensus 836 ~er~~i~~~~l~ 847 (976)
+++..||+.-+.
T Consensus 939 EQL~dILk~RAe 950 (1164)
T PTZ00112 939 DEIEKIIKERLE 950 (1164)
T ss_pred HHHHHHHHHHHH
Confidence 999999998877
No 262
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.98 E-value=1.6e-08 Score=117.41 Aligned_cols=233 Identities=17% Similarity=0.195 Sum_probs=148.7
Q ss_pred cccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhh-----cCCcEEEEEecchhH
Q 002045 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASK-----AGQKVSFYMRKGADV 454 (976)
Q Consensus 380 ~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~-----~~~~~~~~~~~~~~l 454 (976)
.|.+.+....+|-.++...+.. + .....++++|-||||||.+++.|...|.. ......|+.+|+-.+
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~----~----~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l 468 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISD----Q----GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL 468 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCC----C----CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee
Confidence 4788888888887776553211 1 22347999999999999999999998752 234567888888544
Q ss_pred Hh----------hhHhH------HHHHHHHHHHHH-HhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCC
Q 002045 455 LS----------KWVGE------AERQLKLLFEEA-QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS 517 (976)
Q Consensus 455 ~~----------~~~g~------~~~~l~~~f~~a-~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~ 517 (976)
.+ .+.|+ +...+...|... ....++||+|||+|.|+.. .+.++..|+.|-. ..
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr--------~QdVlYn~fdWpt--~~ 538 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTR--------SQDVLYNIFDWPT--LK 538 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcc--------cHHHHHHHhcCCc--CC
Confidence 32 11111 222333333311 1234789999999999854 4667777777765 45
Q ss_pred CCcEEEEecCCCccccchhhcC--CCCCc-cccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH--HH
Q 002045 518 RGQVVLIGATNRVDAIDGALRR--PGRFD-REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA--DL 592 (976)
Q Consensus 518 ~~~vivI~atn~~~~ld~aL~r--~gRf~-~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~--dI 592 (976)
..+++||+.+|..+....-|.. ..|++ ..|.|.+++..++.+|+...+... ..+..+.++-+|......+|. ..
T Consensus 539 ~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRra 617 (767)
T KOG1514|consen 539 NSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRA 617 (767)
T ss_pred CCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHH
Confidence 6688999888886543222211 01432 468899999999999999988876 445566666666655555543 34
Q ss_pred HHHHHHHHHHHHHhhCCccccCcccccccccceeEeehhhhhcccccc
Q 002045 593 KALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (976)
Q Consensus 593 ~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~i~ 640 (976)
..+|+.|+..|-.+.... -+.....++..|+.+|+..+.
T Consensus 618 ldic~RA~Eia~~~~~~~---------k~~~~q~v~~~~v~~Ai~em~ 656 (767)
T KOG1514|consen 618 LDICRRAAEIAEERNVKG---------KLAVSQLVGILHVMEAINEML 656 (767)
T ss_pred HHHHHHHHHHhhhhcccc---------cccccceeehHHHHHHHHHHh
Confidence 466888877766654310 111233466777777776554
No 263
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.98 E-value=1.3e-09 Score=124.93 Aligned_cols=106 Identities=19% Similarity=0.350 Sum_probs=77.2
Q ss_pred CCceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHH-HHHHHHHH----HHhcCCceEeccccchhH
Q 002045 703 RPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEE-ALVHIFGE----ARRTTPSILYIPQFNLWW 777 (976)
Q Consensus 703 ~~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~-~~~~~f~~----a~~~~p~ilfiDEid~l~ 777 (976)
..++||+||||||||++|+++|..+ +.+|+.+++..+....++|.... .+..++.. .....++||||||||++.
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l-~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~ 186 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARIL-DVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIA 186 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHh-CCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhc
Confidence 3579999999999999999999998 78999999988764334666443 34555543 234578999999999997
Q ss_pred HH----------HHHHHHHHHHHHHhhC----C-------CCCCEEEEEecCC
Q 002045 778 EN----------AHEQLRAVLLTLLEEL----P-------SHLPILLLGSSSV 809 (976)
Q Consensus 778 ~~----------~~~~~~~~l~~ll~~~----~-------~~~~v~vi~ttn~ 809 (976)
.. .+..+.+.|+.+|++- + +....++|.|+|-
T Consensus 187 ~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~ni 239 (412)
T PRK05342 187 RKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNI 239 (412)
T ss_pred cccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCc
Confidence 53 1235778888999752 1 1235667777776
No 264
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.98 E-value=6.8e-09 Score=123.58 Aligned_cols=126 Identities=13% Similarity=0.189 Sum_probs=81.5
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCC-----------------------CeeecCCcccccCCCCCChHHHHHHHHHHHH
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKF-----------------------PVHSLGLPALLSDPSAKTPEEALVHIFGEAR 761 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~-----------------------~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~ 761 (976)
.+||+||+|||||++|++||+.+... .++.++... ...-..++.+++.+.
T Consensus 40 AyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas-------~rgVDdIReLIe~a~ 112 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAAS-------NRGVDEMAALLERAV 112 (830)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccc-------cccHHHHHHHHHHHH
Confidence 47999999999999999999987431 122222110 112234666666554
Q ss_pred h----cCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHH
Q 002045 762 R----TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTED 837 (976)
Q Consensus 762 ~----~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~e 837 (976)
. ....|+||||+|.|... ..+.|+..|+.-+ ..+.||.+||.+ ..|.+ ..+-+ -.+|.|..++.++
T Consensus 113 ~~P~~gr~KVIIIDEah~LT~~----A~NALLKtLEEPP--~~v~FILaTtd~-~KIp~--TIrSR-Cq~f~Fk~Ls~ee 182 (830)
T PRK07003 113 YAPVDARFKVYMIDEVHMLTNH----AFNAMLKTLEEPP--PHVKFILATTDP-QKIPV--TVLSR-CLQFNLKQMPAGH 182 (830)
T ss_pred hccccCCceEEEEeChhhCCHH----HHHHHHHHHHhcC--CCeEEEEEECCh-hhccc--hhhhh-eEEEecCCcCHHH
Confidence 2 23469999999998653 2344555555433 255555566666 44544 22222 2578899999999
Q ss_pred HHHHHHHHHH
Q 002045 838 RSLFLGRLIE 847 (976)
Q Consensus 838 r~~i~~~~l~ 847 (976)
...+|+.++.
T Consensus 183 Iv~~L~~Il~ 192 (830)
T PRK07003 183 IVSHLERILG 192 (830)
T ss_pred HHHHHHHHHH
Confidence 9999998887
No 265
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.2e-09 Score=114.41 Aligned_cols=82 Identities=23% Similarity=0.347 Sum_probs=64.0
Q ss_pred cEEEEccccccCCCCCChh-hhhHHHHHHHHHHHhhccC--------CCCcEEEEecC----CCccccchhhcCCCCCcc
Q 002045 479 SIIFFDEIDGLAPVRSSKQ-EQIHNSIVSTLLALMDGLD--------SRGQVVLIGAT----NRVDAIDGALRRPGRFDR 545 (976)
Q Consensus 479 ~VL~iDEid~L~~~r~~~~-~~~~~~~~~~Ll~~ld~~~--------~~~~vivI~at----n~~~~ld~aL~r~gRf~~ 545 (976)
.||||||||.++...+.++ +-....++..||.++++.. .++++++|++. ..|..|-|.|.- ||+-
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--RfPI 329 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--RFPI 329 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--CCce
Confidence 5999999999997665333 3345568888999988753 34578888875 447777788865 9999
Q ss_pred ccCCCCCCHHHHHHHHH
Q 002045 546 EFNFPLPGCEARAEILD 562 (976)
Q Consensus 546 ~i~~~~P~~~er~~Il~ 562 (976)
.+++...+.++...||.
T Consensus 330 RVEL~~Lt~~Df~rILt 346 (444)
T COG1220 330 RVELDALTKEDFERILT 346 (444)
T ss_pred EEEcccCCHHHHHHHHc
Confidence 99999999999999884
No 266
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.97 E-value=2.1e-09 Score=124.88 Aligned_cols=125 Identities=25% Similarity=0.378 Sum_probs=85.5
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHh----cCCceEeccccchhHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARR----TTPSILYIPQFNLWWEN 779 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~----~~p~ilfiDEid~l~~~ 779 (976)
+++||+||||||||++|++||+.+ +..|+.++... .....++.++..+.. ....||||||||.+...
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~-~~~~~~l~a~~--------~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~ 107 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGAT-DAPFEALSAVT--------SGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA 107 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh-CCCEEEEeccc--------ccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH
Confidence 479999999999999999999997 67888877432 123356666666542 25689999999998754
Q ss_pred HHHHHHHHHHHHHhhCCCCCCEEEEEe-cCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHHH
Q 002045 780 AHEQLRAVLLTLLEELPSHLPILLLGS-SSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (976)
Q Consensus 780 ~~~~~~~~l~~ll~~~~~~~~v~vi~t-tn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~~ 848 (976)
.++. |+..| +.. .+++|++ |..+...+++ +.+.+. .++.|.+++.++...+|+..+..
T Consensus 108 ~q~~----LL~~l---e~~-~iilI~att~n~~~~l~~--aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 108 QQDA----LLPHV---EDG-TITLIGATTENPSFEVNP--ALLSRA-QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred HHHH----HHHHh---hcC-cEEEEEeCCCChhhhccH--HHhccc-eeeEeCCCCHHHHHHHHHHHHHH
Confidence 4433 33344 333 4555554 4444345555 333332 57889999999999999988763
No 267
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.97 E-value=2.2e-09 Score=130.66 Aligned_cols=158 Identities=30% Similarity=0.342 Sum_probs=102.3
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhh-------c---------
Q 002045 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASK-------A--------- 440 (976)
Q Consensus 377 ~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~-------~--------- 440 (976)
.|..|+|++.++..|.-+...| ...+|||.|++|||||++|++|+..+.. .
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 4778999999998886655432 1247999999999999999999988720 0
Q ss_pred --------------CCcEEEEEecchhHHhhhHhHH--HHHH--------HHHHHHHHhcCCcEEEEccccccCCCCCCh
Q 002045 441 --------------GQKVSFYMRKGADVLSKWVGEA--ERQL--------KLLFEEAQRNQPSIIFFDEIDGLAPVRSSK 496 (976)
Q Consensus 441 --------------~~~~~~~~~~~~~l~~~~~g~~--~~~l--------~~~f~~a~~~~p~VL~iDEid~L~~~r~~~ 496 (976)
....+|+.+.+.......+|.. ...+ ..++..+ ...|||||||+.|
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l------- 138 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLL------- 138 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhC-------
Confidence 0023455444332222223321 1111 0111111 2349999999988
Q ss_pred hhhhHHHHHHHHHHHhhccC-----------CCCcEEEEecCCCcc-ccchhhcCCCCCccccCCCCCC-HHHHHHHHHH
Q 002045 497 QEQIHNSIVSTLLALMDGLD-----------SRGQVVLIGATNRVD-AIDGALRRPGRFDREFNFPLPG-CEARAEILDI 563 (976)
Q Consensus 497 ~~~~~~~~~~~Ll~~ld~~~-----------~~~~vivI~atn~~~-~ld~aL~r~gRf~~~i~~~~P~-~~er~~Il~~ 563 (976)
...++..|+..|+.-. ...+++||+++|..+ .+.++|.. ||...|.++.+. .+++.+|+..
T Consensus 139 ----~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 139 ----DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred ----CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 3567788888886321 123588999988643 58889988 998888888764 5777777764
No 268
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.97 E-value=4.6e-09 Score=121.79 Aligned_cols=142 Identities=20% Similarity=0.176 Sum_probs=91.3
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc----CCCeeecCCccccc----------CC------CCC-ChHHHHHHHHHHHHh
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE----KFPVHSLGLPALLS----------DP------SAK-TPEEALVHIFGEARR 762 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~----~~~~~~~~~~~l~~----------~~------~~g-~~e~~~~~~f~~a~~ 762 (976)
+.++|+||||||||++++.+++.+. ++.++.+++...-+ .. ..| ...+.+..++.....
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 135 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDE 135 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 4699999999999999999998763 35677887643211 10 011 223344444444433
Q ss_pred -cCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCC--cccCcCCCCCCcCCccEEEecCCCHHHHH
Q 002045 763 -TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVP--LAEVEGDPSTVFPLRSVYQVEKPSTEDRS 839 (976)
Q Consensus 763 -~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~--~~~Ld~~~~~~~~~r~~i~v~~P~~~er~ 839 (976)
..+.||+|||+|.+.......++..|..+++... ..++.||+++|.. ...+++.+..++. ...+.|++++.++..
T Consensus 136 ~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~-~~~v~vI~i~~~~~~~~~l~~~~~s~~~-~~~i~f~py~~~e~~ 213 (394)
T PRK00411 136 RDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYP-GARIGVIGISSDLTFLYILDPRVKSVFR-PEEIYFPPYTADEIF 213 (394)
T ss_pred cCCEEEEEECCHhHhhccCCchHHHHHHHhhhccC-CCeEEEEEEECCcchhhhcCHHHHhcCC-cceeecCCCCHHHHH
Confidence 3468999999999983333344444555554443 3378788888865 1224443333333 256789999999999
Q ss_pred HHHHHHHH
Q 002045 840 LFLGRLIE 847 (976)
Q Consensus 840 ~i~~~~l~ 847 (976)
.||+..+.
T Consensus 214 ~il~~r~~ 221 (394)
T PRK00411 214 DILKDRVE 221 (394)
T ss_pred HHHHHHHH
Confidence 99998876
No 269
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.96 E-value=1.5e-09 Score=115.38 Aligned_cols=191 Identities=18% Similarity=0.150 Sum_probs=128.7
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-CCcEEEEEecch
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYMRKGA 452 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~~~~~ 452 (976)
....+.++++.+++...+.++... ..-.|+|+|||||||||+.+.++|..+... +...-+...+.+
T Consensus 36 rP~~l~dv~~~~ei~st~~~~~~~-------------~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaS 102 (360)
T KOG0990|consen 36 RPPFLGIVIKQEPIWSTENRYSGM-------------PGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNAS 102 (360)
T ss_pred CCchhhhHhcCCchhhHHHHhccC-------------CCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhcc
Confidence 456788899999999888887443 122299999999999999999999998752 111111112222
Q ss_pred hHHhhhHhHHHHHHHHHHHHHHh-------cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEe
Q 002045 453 DVLSKWVGEAERQLKLLFEEAQR-------NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIG 525 (976)
Q Consensus 453 ~l~~~~~g~~~~~l~~~f~~a~~-------~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~ 525 (976)
+-.+. + ....-...|..++. ..+.++++||+|++ ....+++|...++.+.. ++.++.
T Consensus 103 d~rgi--d-~vr~qi~~fast~~~~~fst~~~fKlvILDEADaM-----------T~~AQnALRRviek~t~--n~rF~i 166 (360)
T KOG0990|consen 103 DDRGI--D-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM-----------TRDAQNALRRVIEKYTA--NTRFAT 166 (360)
T ss_pred CccCC--c-chHHHHHHHHhhccceeccccCceeEEEecchhHh-----------hHHHHHHHHHHHHHhcc--ceEEEE
Confidence 21111 1 11112233444432 24669999999988 45677778777775544 445556
Q ss_pred cCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 002045 526 ATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAA 600 (976)
Q Consensus 526 atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~ 600 (976)
.+|.+..+.|++++ ||. .+.|.+.+......++.+++.......+.+....++....| |++..++...
T Consensus 167 i~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~g----Dmr~a~n~Lq 234 (360)
T KOG0990|consen 167 ISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVG----DMRVALNYLQ 234 (360)
T ss_pred eccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHH----HHHHHHHHHH
Confidence 78999999999998 784 57888888889999999999888877777776666655544 5555444433
No 270
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.96 E-value=7.4e-10 Score=130.27 Aligned_cols=165 Identities=21% Similarity=0.213 Sum_probs=101.8
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc----CCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH-
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE----KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN- 779 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~----~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~- 779 (976)
.++|+||||||||||++++++++. +..++.+++.+++..+ ..........-|..... .+.+|+||||+.+.+.
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDF-VNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE 227 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH-HHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH
Confidence 599999999999999999999863 3457777766654332 11111001112222222 4689999999998653
Q ss_pred -HHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccC---cCCCCCCcCCccEEEecCCCHHHHHHHHHHHHHHHHhhhhc
Q 002045 780 -AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEV---EGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAAVSVVLE 855 (976)
Q Consensus 780 -~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~L---d~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~~~~~~~~~ 855 (976)
.++.++..|..+.+. ...+|| |+|.++..| ++.+.+++....++.|.+|+.++|..|++..+..
T Consensus 228 ~~~~~l~~~~n~l~~~----~~~iii-ts~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~------- 295 (450)
T PRK00149 228 RTQEEFFHTFNALHEA----GKQIVL-TSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE------- 295 (450)
T ss_pred HHHHHHHHHHHHHHHC----CCcEEE-ECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH-------
Confidence 344555555555542 233444 555554554 3455666665578999999999999999998873
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHH
Q 002045 856 GRSKKPQESVSLPELPKVPTVESGPKASELKAKV 889 (976)
Q Consensus 856 ~~~~~~~~~~dl~~La~~~~~~sg~s~aelk~~~ 889 (976)
......+..++.|+... . .+.++|...+
T Consensus 296 --~~~~l~~e~l~~ia~~~---~-~~~R~l~~~l 323 (450)
T PRK00149 296 --EGIDLPDEVLEFIAKNI---T-SNVRELEGAL 323 (450)
T ss_pred --cCCCCCHHHHHHHHcCc---C-CCHHHHHHHH
Confidence 12223334466666655 2 2445555444
No 271
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.96 E-value=1.7e-09 Score=123.38 Aligned_cols=105 Identities=19% Similarity=0.328 Sum_probs=77.5
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCCh-HHHHHHHHHHH----HhcCCceEeccccchhHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTP-EEALVHIFGEA----RRTTPSILYIPQFNLWWE 778 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~-e~~~~~~f~~a----~~~~p~ilfiDEid~l~~ 778 (976)
.++||+||||||||++|+++|..+ +.+|+.+++..+....++|.. +..+..++..+ ....++||||||||++..
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l-~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~ 195 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARIL-NVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR 195 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhc-CCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhch
Confidence 479999999999999999999998 789999998877643346764 44455555432 345678999999999986
Q ss_pred H----------HHHHHHHHHHHHHhhCC-----------CCCCEEEEEecCC
Q 002045 779 N----------AHEQLRAVLLTLLEELP-----------SHLPILLLGSSSV 809 (976)
Q Consensus 779 ~----------~~~~~~~~l~~ll~~~~-----------~~~~v~vi~ttn~ 809 (976)
. .+..+.+.|+++|++.. ++.+.++|.|+|-
T Consensus 196 ~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNi 247 (413)
T TIGR00382 196 KSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNI 247 (413)
T ss_pred hhccccccccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCc
Confidence 3 12357777888886431 1456788999886
No 272
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.96 E-value=3.2e-09 Score=119.60 Aligned_cols=153 Identities=23% Similarity=0.241 Sum_probs=104.2
Q ss_pred cccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------------
Q 002045 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------------ 441 (976)
Q Consensus 380 ~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------------ 441 (976)
+++|.+.+...+..++... + ..+..+||+||||||||++|.++|+.+....
T Consensus 2 ~~~~~~~~~~~l~~~~~~~----------~-~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES----------G-RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhc----------C-CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 4677777777777765421 1 2233599999999999999999999997433
Q ss_pred -CcEEEEEecchhHHhhhHhHHHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC
Q 002045 442 -QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD 516 (976)
Q Consensus 442 -~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~----~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~ 516 (976)
....++.++.++..... -....++.+...... +..-|+||||+|.| .....+.|+..++.
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~m-----------t~~A~nallk~lEe-- 135 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKL-----------TEDAANALLKTLEE-- 135 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHH-----------hHHHHHHHHHHhcc--
Confidence 23456667766543321 123334444433322 23469999999988 45677889998884
Q ss_pred CCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHH
Q 002045 517 SRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEIL 561 (976)
Q Consensus 517 ~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il 561 (976)
...+..+|.+||.+..|-+.+++ |+ ..+.|++|+........
T Consensus 136 p~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~~ 177 (325)
T COG0470 136 PPKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAWL 177 (325)
T ss_pred CCCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHHh
Confidence 45567888889999999889988 66 67888776554444443
No 273
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.95 E-value=6.2e-09 Score=119.35 Aligned_cols=154 Identities=23% Similarity=0.222 Sum_probs=91.9
Q ss_pred ccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEe---cchhHHhh
Q 002045 381 IGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR---KGADVLSK 457 (976)
Q Consensus 381 i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~---~~~~l~~~ 457 (976)
|+|.+++++.+..++ -...+|||+||||||||++|++++..+.... ...++.+ ..+++++.
T Consensus 22 i~gre~vI~lll~aa---------------lag~hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~~~~fttp~DLfG~ 85 (498)
T PRK13531 22 LYERSHAIRLCLLAA---------------LSGESVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYLMTRFSTPEEVFGP 85 (498)
T ss_pred ccCcHHHHHHHHHHH---------------ccCCCEEEECCCChhHHHHHHHHHHHhcccC-cceeeeeeecCcHHhcCc
Confidence 788888887776654 2356899999999999999999999875432 1111111 23333322
Q ss_pred hHhHHHHHHHHHHHHHHhc---CCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC--------CCCcEEEEec
Q 002045 458 WVGEAERQLKLLFEEAQRN---QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD--------SRGQVVLIGA 526 (976)
Q Consensus 458 ~~g~~~~~l~~~f~~a~~~---~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~--------~~~~vivI~a 526 (976)
...... .-..-|.....+ ...+||+|||..+ ...+++.||..|+.-. .-...++++|
T Consensus 86 l~i~~~-~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~A 153 (498)
T PRK13531 86 LSIQAL-KDEGRYQRLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTA 153 (498)
T ss_pred HHHhhh-hhcCchhhhcCCccccccEEeecccccC-----------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEE
Confidence 100000 001112211111 2239999999766 4678888999984321 1112345555
Q ss_pred CCCccc---cchhhcCCCCCccccCCCCCC-HHHHHHHHHHH
Q 002045 527 TNRVDA---IDGALRRPGRFDREFNFPLPG-CEARAEILDIH 564 (976)
Q Consensus 527 tn~~~~---ld~aL~r~gRf~~~i~~~~P~-~~er~~Il~~~ 564 (976)
||.... ..+++.. ||...+.+|+|+ .++..+||...
T Consensus 154 TN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 154 SNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcc
Confidence 574321 2247877 898889999997 46667788653
No 274
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.94 E-value=3.2e-09 Score=115.67 Aligned_cols=133 Identities=19% Similarity=0.160 Sum_probs=83.4
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCc------ccccCCCCCChHHHHH-------------------HHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLP------ALLSDPSAKTPEEALV-------------------HIFG 758 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~------~l~~~~~~g~~e~~~~-------------------~~f~ 758 (976)
..+||.||||||||++|+++|+.+ +.+++.+++. ++++.+........+. ..+.
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~l-g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKR-DRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh-CCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 359999999999999999999987 7899988654 3443331111111111 1112
Q ss_pred HHHhcCCceEeccccchhHHHHHHHHHHHHHHHHhhC----CC----------CCCEEEEEecCCCcc----cCcCCCCC
Q 002045 759 EARRTTPSILYIPQFNLWWENAHEQLRAVLLTLLEEL----PS----------HLPILLLGSSSVPLA----EVEGDPST 820 (976)
Q Consensus 759 ~a~~~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~----~~----------~~~v~vi~ttn~~~~----~Ld~~~~~ 820 (976)
.|.. .+.+||||||+.+.+..+.. |+.+|+.- +. ..+..||+|+|.... .+++ +.
T Consensus 101 ~A~~-~g~~lllDEi~r~~~~~q~~----Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~--aL 173 (262)
T TIGR02640 101 LAVR-EGFTLVYDEFTRSKPETNNV----LLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQD--AL 173 (262)
T ss_pred HHHH-cCCEEEEcchhhCCHHHHHH----HHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccH--HH
Confidence 2222 34799999999977655444 55555431 11 125678999996511 2333 33
Q ss_pred CcCCccEEEecCCCHHHHHHHHHHH
Q 002045 821 VFPLRSVYQVEKPSTEDRSLFLGRL 845 (976)
Q Consensus 821 ~~~~r~~i~v~~P~~~er~~i~~~~ 845 (976)
+.++ ..+.++.|+.++-.+|++.+
T Consensus 174 ~~R~-~~i~i~~P~~~~e~~Il~~~ 197 (262)
T TIGR02640 174 LDRL-ITIFMDYPDIDTETAILRAK 197 (262)
T ss_pred Hhhc-EEEECCCCCHHHHHHHHHHh
Confidence 3332 56779999999999998854
No 275
>PHA02244 ATPase-like protein
Probab=98.94 E-value=6.5e-09 Score=115.28 Aligned_cols=123 Identities=25% Similarity=0.329 Sum_probs=77.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhHh---HHHHHHHHHHHHHHhcCCcEEEEccccc
Q 002045 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVG---EAERQLKLLFEEAQRNQPSIIFFDEIDG 488 (976)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~g---~~~~~l~~~f~~a~~~~p~VL~iDEid~ 488 (976)
...+|||+||||||||++|+++|..++ .+|+.++...-.....| ........-|-.+. ..+.+|||||++.
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg-----~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~ 191 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALD-----LDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDA 191 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCc
Confidence 345799999999999999999999985 45555553210001111 00000111122222 2346999999987
Q ss_pred cCCCCCChhhhhHHHHHHHHHHHhhc---------cCCCCcEEEEecCCCc-----------cccchhhcCCCCCccccC
Q 002045 489 LAPVRSSKQEQIHNSIVSTLLALMDG---------LDSRGQVVLIGATNRV-----------DAIDGALRRPGRFDREFN 548 (976)
Q Consensus 489 L~~~r~~~~~~~~~~~~~~Ll~~ld~---------~~~~~~vivI~atn~~-----------~~ld~aL~r~gRf~~~i~ 548 (976)
+. ..++..|..+++. .....++.||+|+|.+ ..++++++. ||. .|+
T Consensus 192 a~-----------p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~ 257 (383)
T PHA02244 192 SI-----------PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIE 257 (383)
T ss_pred CC-----------HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-Eee
Confidence 74 3344455555541 1123578999999983 357899999 995 689
Q ss_pred CCCCCH
Q 002045 549 FPLPGC 554 (976)
Q Consensus 549 ~~~P~~ 554 (976)
|..|+.
T Consensus 258 ~dyp~~ 263 (383)
T PHA02244 258 FDYDEK 263 (383)
T ss_pred CCCCcH
Confidence 999984
No 276
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.93 E-value=3.1e-09 Score=113.86 Aligned_cols=129 Identities=18% Similarity=0.151 Sum_probs=82.2
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcC--CCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH--
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEK--FPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-- 779 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~--~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~-- 779 (976)
+.++|+||||||||||+.++++.+.. ..+..+....... ....+++.... ..+|+||||+.+...
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~---------~~~~~~~~~~~--~dlliiDdi~~~~~~~~ 114 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW---------FVPEVLEGMEQ--LSLVCIDNIECIAGDEL 114 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh---------hhHHHHHHhhh--CCEEEEeChhhhcCCHH
Confidence 36999999999999999999987532 2233333322211 11222332222 268999999998643
Q ss_pred HHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCc---CCCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 780 AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVE---GDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 780 ~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld---~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
....+...++.+++ ...+-||.|++.++..+. +.+.+|+....++.+.+|+.+++.++++....
T Consensus 115 ~~~~lf~l~n~~~e----~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~ 181 (235)
T PRK08084 115 WEMAIFDLYNRILE----SGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRAR 181 (235)
T ss_pred HHHHHHHHHHHHHH----cCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHH
Confidence 34455555555554 223334445556656643 35566665558999999999999999987665
No 277
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.93 E-value=6.5e-09 Score=119.28 Aligned_cols=138 Identities=14% Similarity=0.177 Sum_probs=88.8
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcC--------CCeeecCCccccc---------------CC---CCC-ChHHHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEK--------FPVHSLGLPALLS---------------DP---SAK-TPEEALVHI 756 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~--------~~~~~~~~~~l~~---------------~~---~~g-~~e~~~~~~ 756 (976)
+.++|+||||||||++++++++.+.. +.++.+++....+ +. ..| ...+.+..+
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 120 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRL 120 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHH
Confidence 46999999999999999999986531 4577777643221 00 001 123344555
Q ss_pred HHHHHh-cCCceEeccccchhHHHHHHHHHHHHHHHHhh--CC--CCCCEEEEEecCCCccc---CcCCCCCCcCCccEE
Q 002045 757 FGEARR-TTPSILYIPQFNLWWENAHEQLRAVLLTLLEE--LP--SHLPILLLGSSSVPLAE---VEGDPSTVFPLRSVY 828 (976)
Q Consensus 757 f~~a~~-~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~--~~--~~~~v~vi~ttn~~~~~---Ld~~~~~~~~~r~~i 828 (976)
+..... ..+.||+|||+|.+.... ..+ |..++.. .. ...++.+|+++|.+ +. |++.+..+|. ...+
T Consensus 121 ~~~l~~~~~~~vlvIDE~d~L~~~~-~~~---L~~l~~~~~~~~~~~~~v~lI~i~n~~-~~~~~l~~~~~s~~~-~~~i 194 (365)
T TIGR02928 121 YKELNERGDSLIIVLDEIDYLVGDD-DDL---LYQLSRARSNGDLDNAKVGVIGISNDL-KFRENLDPRVKSSLC-EEEI 194 (365)
T ss_pred HHHHHhcCCeEEEEECchhhhccCC-cHH---HHhHhccccccCCCCCeEEEEEEECCc-chHhhcCHHHhccCC-ccee
Confidence 555432 446899999999997332 222 3333333 11 23678888999987 32 4443333332 2578
Q ss_pred EecCCCHHHHHHHHHHHHH
Q 002045 829 QVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 829 ~v~~P~~~er~~i~~~~l~ 847 (976)
.|++++.++...|++..+.
T Consensus 195 ~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 195 IFPPYDAEELRDILENRAE 213 (365)
T ss_pred eeCCCCHHHHHHHHHHHHH
Confidence 8999999999999998886
No 278
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.93 E-value=5.4e-09 Score=117.37 Aligned_cols=193 Identities=20% Similarity=0.155 Sum_probs=116.4
Q ss_pred ccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhh--
Q 002045 381 IGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKW-- 458 (976)
Q Consensus 381 i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~-- 458 (976)
|+|.....+.+.+.+... .....+|||+|++||||+++|++|....... ..+|+.++|..+....
T Consensus 1 liG~S~~m~~~~~~~~~~-----------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~--~~pfv~vnc~~~~~~~l~ 67 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL-----------APLDRPVLIIGERGTGKELIAARLHYLSKRW--QGPLVKLNCAALSENLLD 67 (329)
T ss_pred CCcCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCChHHHHHHHHHHhcCcc--CCCeEEEeCCCCChHHHH
Confidence 456666666666655431 1345679999999999999999998765432 3689999997653221
Q ss_pred ---HhHHHH-------HHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC---------CCC
Q 002045 459 ---VGEAER-------QLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD---------SRG 519 (976)
Q Consensus 459 ---~g~~~~-------~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~---------~~~ 519 (976)
+|.... ....+|..+. ..+||||||+.|. ..++..|+..++.-. ...
T Consensus 68 ~~lfG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 133 (329)
T TIGR02974 68 SELFGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATAS-----------LLVQEKLLRVIEYGEFERVGGSQTLQV 133 (329)
T ss_pred HHHhccccccccCcccccCCchhhCC---CCEEEeCChHhCC-----------HHHHHHHHHHHHcCcEEecCCCceecc
Confidence 111100 0011233333 4599999999883 556777777775321 123
Q ss_pred cEEEEecCCCcc-------ccchhhcCCCCC-ccccCCCCCC--HHHHHHHHHHHHhc----CC----CCCCHHHHHHHH
Q 002045 520 QVVLIGATNRVD-------AIDGALRRPGRF-DREFNFPLPG--CEARAEILDIHTRK----WK----QPPSRELKSELA 581 (976)
Q Consensus 520 ~vivI~atn~~~-------~ld~aL~r~gRf-~~~i~~~~P~--~~er~~Il~~~l~~----~~----~~~~~~~l~~lA 581 (976)
++.||++|+..- .+.+.|.. |+ ...|.+|+.- .+++..++..++.. .+ ..++.+.+..|.
T Consensus 134 ~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~ 211 (329)
T TIGR02974 134 DVRLVCATNADLPALAAEGRFRADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLL 211 (329)
T ss_pred ceEEEEechhhHHHHhhcCchHHHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHH
Confidence 577888887621 23344444 45 2345555443 24444455444432 22 356788887777
Q ss_pred HHccCCCHHHHHHHHHHHHHH
Q 002045 582 ASCVGYCGADLKALCTEAAIR 602 (976)
Q Consensus 582 ~~t~G~s~~dI~~l~~~A~~~ 602 (976)
.+.=--+-++|++++..++..
T Consensus 212 ~y~WPGNvrEL~n~i~~~~~~ 232 (329)
T TIGR02974 212 EYHWPGNVRELKNVVERSVYR 232 (329)
T ss_pred hCCCCchHHHHHHHHHHHHHh
Confidence 766445678888888877754
No 279
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.92 E-value=2.3e-09 Score=123.33 Aligned_cols=126 Identities=12% Similarity=0.146 Sum_probs=80.1
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCC-----------------------eeecCCcccccCCCCCChHHHHHHHHHHHH
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFP-----------------------VHSLGLPALLSDPSAKTPEEALVHIFGEAR 761 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~-----------------------~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~ 761 (976)
.+||+||+|||||++|+++|+.+.... |+.++... ...-..++.+...+.
T Consensus 42 a~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas-------~~gVd~IReL~e~l~ 114 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAAS-------NRGIENIRELRDNVK 114 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhh-------cccHHHHHHHHHHHH
Confidence 489999999999999999999874321 22222110 111234565555443
Q ss_pred ----hcCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHH
Q 002045 762 ----RTTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTED 837 (976)
Q Consensus 762 ----~~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~e 837 (976)
.....|+||||+|.+.... .++|+..|+.- -..+++|.+|+.+ ..|.+ ..+.+ -.+|.|..++..+
T Consensus 115 ~~p~~g~~KV~IIDEah~Ls~~A----~NALLKtLEEP--p~~viFILaTte~-~kI~~--TI~SR-Cq~~~f~~ls~~~ 184 (484)
T PRK14956 115 FAPMGGKYKVYIIDEVHMLTDQS----FNALLKTLEEP--PAHIVFILATTEF-HKIPE--TILSR-CQDFIFKKVPLSV 184 (484)
T ss_pred hhhhcCCCEEEEEechhhcCHHH----HHHHHHHhhcC--CCceEEEeecCCh-hhccH--HHHhh-hheeeecCCCHHH
Confidence 2334699999999986543 33444445432 2455556566666 55655 33322 2568899999999
Q ss_pred HHHHHHHHHH
Q 002045 838 RSLFLGRLIE 847 (976)
Q Consensus 838 r~~i~~~~l~ 847 (976)
..+.++.++.
T Consensus 185 i~~~L~~i~~ 194 (484)
T PRK14956 185 LQDYSEKLCK 194 (484)
T ss_pred HHHHHHHHHH
Confidence 8888888887
No 280
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.92 E-value=6.9e-10 Score=126.27 Aligned_cols=143 Identities=17% Similarity=0.193 Sum_probs=103.1
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcC--CCeeecCCc---------ccccCCCCCChHHHHH----HHHHHHHhcCCceE
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEK--FPVHSLGLP---------ALLSDPSAKTPEEALV----HIFGEARRTTPSIL 768 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~--~~~~~~~~~---------~l~~~~~~g~~e~~~~----~~f~~a~~~~p~il 768 (976)
..+||.|.+||||.++|++|.+.... .||++++|+ +|| +|--|...-+.+ .+|+.|.. +-|
T Consensus 269 stVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELF-Gye~GAFTGA~~~GK~GlfE~A~g---GTL 344 (560)
T COG3829 269 STVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELF-GYEKGAFTGASKGGKPGLFELANG---GTL 344 (560)
T ss_pred CcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHh-CcCCccccccccCCCCcceeeccC---CeE
Confidence 35999999999999999999987433 699999995 344 444454444444 36666654 579
Q ss_pred eccccchhHHHHHHHHHHHHHH-HHhhCCC----CCCEEEEEecCCCcccCcCCCCCCcCCc-----cEEEecCCCHHHH
Q 002045 769 YIPQFNLWWENAHEQLRAVLLT-LLEELPS----HLPILLLGSSSVPLAEVEGDPSTVFPLR-----SVYQVEKPSTEDR 838 (976)
Q Consensus 769 fiDEid~l~~~~~~~~~~~l~~-ll~~~~~----~~~v~vi~ttn~~~~~Ld~~~~~~~~~r-----~~i~v~~P~~~er 838 (976)
|+|||-.+...-+..++++|.. .+..+.+ ..+|-||||||+....+-. .+.|+.+ .|+.+..|...+|
T Consensus 345 FLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~~i~--~G~FReDLYYRLNV~~i~iPPLReR 422 (560)
T COG3829 345 FLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEKMIA--EGTFREDLYYRLNVIPITIPPLRER 422 (560)
T ss_pred EehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHHHHHh--cCcchhhheeeeceeeecCCCcccC
Confidence 9999999987777776665521 1222322 4578999999999666655 6666654 8999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 002045 839 SLFLGRLIEAAVSV 852 (976)
Q Consensus 839 ~~i~~~~l~~~~~~ 852 (976)
.+-+..+...++..
T Consensus 423 ~eDI~~L~~~Fl~k 436 (560)
T COG3829 423 KEDIPLLAEYFLDK 436 (560)
T ss_pred cchHHHHHHHHHHH
Confidence 98777776655543
No 281
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.92 E-value=1.3e-08 Score=121.90 Aligned_cols=208 Identities=13% Similarity=0.157 Sum_probs=118.8
Q ss_pred CCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcE-EEE---E
Q 002045 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKV-SFY---M 448 (976)
Q Consensus 373 ~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~-~~~---~ 448 (976)
-.+.++++|+|++..++.|+.++..- .++..+...++|+||||||||++++++|..++...... +.+ .
T Consensus 78 yrP~~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~ 149 (637)
T TIGR00602 78 YKPETQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDF 149 (637)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcc
Confidence 35678999999999999998887541 12224445699999999999999999999886432110 000 0
Q ss_pred e--------cchhHHhhhHhHHHHHHHHHHHHHH----------hcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHH
Q 002045 449 R--------KGADVLSKWVGEAERQLKLLFEEAQ----------RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (976)
Q Consensus 449 ~--------~~~~l~~~~~g~~~~~l~~~f~~a~----------~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~ 510 (976)
. +...-+..+. .....+..++..+. .....|||||||+.++.. ....+..++.
T Consensus 150 ~~~~~~~~~s~~~~~~~~~-s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r--------~~~~lq~lLr 220 (637)
T TIGR00602 150 QKNDHKVTLSLESCFSNFQ-SQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR--------DTRALHEILR 220 (637)
T ss_pred cccccccchhhhhcccccc-chHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh--------hHHHHHHHHH
Confidence 0 0000011111 11222333333333 124569999999887621 1223444444
Q ss_pred HhhccCCCCcEEEEecCC-Ccc--------------ccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCC-----
Q 002045 511 LMDGLDSRGQVVLIGATN-RVD--------------AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQ----- 570 (976)
Q Consensus 511 ~ld~~~~~~~vivI~atn-~~~--------------~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~----- 570 (976)
++- ...+.+.||++++ .+. .|.+++++..|. .+|.|++.+.....+.|+..+.....
T Consensus 221 ~~~--~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~ 297 (637)
T TIGR00602 221 WKY--VSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGEK 297 (637)
T ss_pred HHh--hcCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhccccc
Confidence 111 1123343443333 121 133566642233 47899999999988888777765321
Q ss_pred --CCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q 002045 571 --PPSRELKSELAASCVGYCGADLKALCTEAAIRAF 604 (976)
Q Consensus 571 --~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~ 604 (976)
..+.+.+..|+....| ||+.++......+.
T Consensus 298 ~~~p~~~~l~~I~~~s~G----DiRsAIn~LQf~~~ 329 (637)
T TIGR00602 298 IKVPKKTSVELLCQGCSG----DIRSAINSLQFSSS 329 (637)
T ss_pred cccCCHHHHHHHHHhCCC----hHHHHHHHHHHHHh
Confidence 1234667778776555 88877766555443
No 282
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.91 E-value=4e-08 Score=109.59 Aligned_cols=209 Identities=20% Similarity=0.226 Sum_probs=139.3
Q ss_pred cccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhH-----
Q 002045 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV----- 454 (976)
Q Consensus 380 ~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l----- 454 (976)
.+.|.+.....+++++..++ ....+..++++|-||||||.+..-+-..+...+.....++++|..+
T Consensus 151 ~l~gRe~e~~~v~~F~~~hl---------e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHL---------ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred CccchHHHHHHHHHHHHhhh---------hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHH
Confidence 58999999999999987753 2466778999999999999999988777766665555566676532
Q ss_pred -HhhhHhHH---------HHHHHHHH-HHHHhcC-CcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEE
Q 002045 455 -LSKWVGEA---------ERQLKLLF-EEAQRNQ-PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVV 522 (976)
Q Consensus 455 -~~~~~g~~---------~~~l~~~f-~~a~~~~-p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vi 522 (976)
+.+..+.. .......| ....... +-||++||+|.|+.. ...++.+|+.|-. ....+++
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr--------~~~vLy~lFewp~--lp~sr~i 291 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITR--------SQTVLYTLFEWPK--LPNSRII 291 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhc--------ccceeeeehhccc--CCcceee
Confidence 22222211 11122222 2222233 679999999999733 3345555655433 3456789
Q ss_pred EEecCCCccccchhhcC----CCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHccCCCHH--HHHHH
Q 002045 523 LIGATNRVDAIDGALRR----PGRFDREFNFPLPGCEARAEILDIHTRKWKQPPS-RELKSELAASCVGYCGA--DLKAL 595 (976)
Q Consensus 523 vI~atn~~~~ld~aL~r----~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~~l~~lA~~t~G~s~~--dI~~l 595 (976)
+||.+|..+.-|..|-+ .+--...+.|++|+.++..+||+..+........ ...++.+|....|.+|. .+-.+
T Consensus 292 LiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv 371 (529)
T KOG2227|consen 292 LIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDV 371 (529)
T ss_pred eeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHH
Confidence 99999998775544432 1223567899999999999999999887654433 23667888888888863 23344
Q ss_pred HHHHHHHHHHhh
Q 002045 596 CTEAAIRAFREK 607 (976)
Q Consensus 596 ~~~A~~~a~~~~ 607 (976)
|+.|...+-...
T Consensus 372 ~R~aiEI~E~e~ 383 (529)
T KOG2227|consen 372 CRRAIEIAEIEK 383 (529)
T ss_pred HHHHHHHHHHHH
Confidence 666665555443
No 283
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.91 E-value=1.6e-09 Score=125.99 Aligned_cols=136 Identities=18% Similarity=0.226 Sum_probs=89.8
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH--H
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN--A 780 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~--~ 780 (976)
.++|+||+|+|||||++++++++. +..++.+....+...+ .......-...|.... ..+.||+||||+.+.+. .
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~-~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~~ 220 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHL-VSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGAT 220 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHH-HHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChhh
Confidence 599999999999999999999753 4667777765443221 0000000011233332 24689999999998643 4
Q ss_pred HHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCc---CCCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 781 HEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVE---GDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 781 ~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld---~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
++.+...++.+... ...+|| |++.++..|. +.+.++|.+..++.+.+|+.++|..|++..+.
T Consensus 221 qeelf~l~N~l~~~----~k~IIl-ts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~ 285 (445)
T PRK12422 221 QEEFFHTFNSLHTE----GKLIVI-SSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAE 285 (445)
T ss_pred HHHHHHHHHHHHHC----CCcEEE-ecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHH
Confidence 56666666666542 234444 5555435543 45667776668999999999999999998877
No 284
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.91 E-value=2.1e-09 Score=121.26 Aligned_cols=145 Identities=28% Similarity=0.372 Sum_probs=95.1
Q ss_pred ccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecch------hH
Q 002045 381 IGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA------DV 454 (976)
Q Consensus 381 i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~------~l 454 (976)
++|.++++..+...+. ...++||.||||||||++|+++|..++ .+|+.+.+. ++
T Consensus 26 ~~g~~~~~~~~l~a~~---------------~~~~vll~G~PG~gKT~la~~lA~~l~-----~~~~~i~~t~~l~p~d~ 85 (329)
T COG0714 26 VVGDEEVIELALLALL---------------AGGHVLLEGPPGVGKTLLARALARALG-----LPFVRIQCTPDLLPSDL 85 (329)
T ss_pred eeccHHHHHHHHHHHH---------------cCCCEEEECCCCccHHHHHHHHHHHhC-----CCeEEEecCCCCCHHHh
Confidence 6777776666544432 246899999999999999999999997 455555554 33
Q ss_pred HhhhHhHHHHHHH--------HHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhc----------cC
Q 002045 455 LSKWVGEAERQLK--------LLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDG----------LD 516 (976)
Q Consensus 455 ~~~~~g~~~~~l~--------~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~----------~~ 516 (976)
++.+.-.....-. -+|.... +|+|+|||+.. ...+++.|+..|+. +.
T Consensus 86 ~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~DEInra-----------~p~~q~aLl~~l~e~~vtv~~~~~~~ 150 (329)
T COG0714 86 LGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLLDEINRA-----------PPEVQNALLEALEERQVTVPGLTTIR 150 (329)
T ss_pred cCchhHhhhhccCCeEEEecCCcccccc----eEEEEeccccC-----------CHHHHHHHHHHHhCcEEEECCcCCcC
Confidence 3332222110000 0111111 49999999866 35677888888875 22
Q ss_pred CCCcEEEEecCCC-----ccccchhhcCCCCCccccCCCCCCHHHHHHHHH
Q 002045 517 SRGQVVLIGATNR-----VDAIDGALRRPGRFDREFNFPLPGCEARAEILD 562 (976)
Q Consensus 517 ~~~~vivI~atn~-----~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~ 562 (976)
-...++||+|+|+ ...+++++++ ||...++++.|..++-..++.
T Consensus 151 ~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~ 199 (329)
T COG0714 151 LPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIIL 199 (329)
T ss_pred CCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHH
Confidence 3357889999894 3348999999 998889999995444444433
No 285
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=1.4e-08 Score=113.51 Aligned_cols=155 Identities=19% Similarity=0.265 Sum_probs=103.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCC-------------------cEEEEEecchhHHhhhHhHHHHHHHHHHH
Q 002045 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQ-------------------KVSFYMRKGADVLSKWVGEAERQLKLLFE 471 (976)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~-------------------~~~~~~~~~~~l~~~~~g~~~~~l~~~f~ 471 (976)
+.+..+||+||+|+|||++|+++|+.+..... +..++.+....- ++. -.-..++.+.+
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~~--i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DKT--IKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CCC--CCHHHHHHHHH
Confidence 44668999999999999999999999865321 112222221100 000 01234444444
Q ss_pred HHH----hcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCccccchhhcCCCCCcccc
Q 002045 472 EAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREF 547 (976)
Q Consensus 472 ~a~----~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i 547 (976)
.+. .+..-|++||++|.| .....+.||..|+. ..+++++|.+|+.++.|.+.+++ |+ ..+
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m-----------~~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc-~~~ 160 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAM-----------NRNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RC-QQQ 160 (328)
T ss_pred HHhhccccCCCeEEEECChhhC-----------CHHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hc-eee
Confidence 433 334569999999998 45677889999995 44678888899999999999999 77 569
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCC
Q 002045 548 NFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYC 588 (976)
Q Consensus 548 ~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s 588 (976)
.|++|+.++..+.|..... ....+....++..+.|-.
T Consensus 161 ~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~l~la~Gsp 197 (328)
T PRK05707 161 ACPLPSNEESLQWLQQALP----ESDERERIELLTLAGGSP 197 (328)
T ss_pred eCCCcCHHHHHHHHHHhcc----cCChHHHHHHHHHcCCCH
Confidence 9999999998888876532 123333345566666643
No 286
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.90 E-value=2.8e-09 Score=127.10 Aligned_cols=175 Identities=16% Similarity=0.137 Sum_probs=101.5
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc---------CCCeeecCCccc------ccCCCCCChHHHH---HHHH--------
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE---------KFPVHSLGLPAL------LSDPSAKTPEEAL---VHIF-------- 757 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~---------~~~~~~~~~~~l------~~~~~~g~~e~~~---~~~f-------- 757 (976)
.++||+||||||||++|+++++.+. ..+|+.+++... +.....|.....+ ...|
T Consensus 87 ~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~ 166 (531)
T TIGR02902 87 QHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQP 166 (531)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccc
Confidence 4699999999999999999987521 357888887532 1111111100000 0000
Q ss_pred --HHHHhcCCceEeccccchhHHHHHHHHHHHHHHHHhhCC----------------------CCCCEEEE-EecCCCcc
Q 002045 758 --GEARRTTPSILYIPQFNLWWENAHEQLRAVLLTLLEELP----------------------SHLPILLL-GSSSVPLA 812 (976)
Q Consensus 758 --~~a~~~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~----------------------~~~~v~vi-~ttn~~~~ 812 (976)
........++||||||+.+....+..++..|..-.-.+. -...+.|| +||+.+ +
T Consensus 167 ~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p-~ 245 (531)
T TIGR02902 167 KPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNP-E 245 (531)
T ss_pred cCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCc-c
Confidence 011233458999999999998877776665532110000 01133444 555555 7
Q ss_pred cCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHH-HH
Q 002045 813 EVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPKASELKAKV-EA 891 (976)
Q Consensus 813 ~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~sg~s~aelk~~~-ea 891 (976)
.|++ +.+++. ..+.|++++.+++.+|++..+.+. ....++..++.|...+ .+.+++.+++ .+
T Consensus 246 ~L~p--aLrsR~-~~I~f~pL~~eei~~Il~~~a~k~---------~i~is~~al~~I~~y~-----~n~Rel~nll~~A 308 (531)
T TIGR02902 246 EIPP--ALRSRC-VEIFFRPLLDEEIKEIAKNAAEKI---------GINLEKHALELIVKYA-----SNGREAVNIVQLA 308 (531)
T ss_pred cCCh--HHhhhh-heeeCCCCCHHHHHHHHHHHHHHc---------CCCcCHHHHHHHHHhh-----hhHHHHHHHHHHH
Confidence 8888 666553 466689999999999999888741 1112223344444443 2457777777 44
Q ss_pred HHHHH
Q 002045 892 EQHAL 896 (976)
Q Consensus 892 ~~~al 896 (976)
...+.
T Consensus 309 a~~A~ 313 (531)
T TIGR02902 309 AGIAL 313 (531)
T ss_pred HHHHh
Confidence 44443
No 287
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.90 E-value=3.7e-09 Score=123.60 Aligned_cols=127 Identities=17% Similarity=0.172 Sum_probs=81.9
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCC-----------------------CeeecCCcccccCCCCCChHHHHHHHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKF-----------------------PVHSLGLPALLSDPSAKTPEEALVHIFGEA 760 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~-----------------------~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a 760 (976)
..+||+||||||||++|+++|+.+... .++.++.+. ...-..++++...+
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~-------~~gid~iR~i~~~~ 109 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAAS-------NRGIDEIRKIRDAV 109 (472)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcc-------cCCHHHHHHHHHHH
Confidence 358999999999999999999987431 233333211 11134566666655
Q ss_pred Hhc----CCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHH
Q 002045 761 RRT----TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTE 836 (976)
Q Consensus 761 ~~~----~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~ 836 (976)
... ...||||||+|.+.... .+.|+..|+..+ . .+++|++|+.+ ..+.+ +.+.+ -.++.|.+|+..
T Consensus 110 ~~~p~~~~~kVvIIDE~h~Lt~~a----~~~LLk~LE~p~-~-~vv~Ilattn~-~kl~~--~L~SR-~~vv~f~~l~~~ 179 (472)
T PRK14962 110 GYRPMEGKYKVYIIDEVHMLTKEA----FNALLKTLEEPP-S-HVVFVLATTNL-EKVPP--TIISR-CQVIEFRNISDE 179 (472)
T ss_pred hhChhcCCeEEEEEEChHHhHHHH----HHHHHHHHHhCC-C-cEEEEEEeCCh-HhhhH--HHhcC-cEEEEECCccHH
Confidence 432 24699999999986533 334555555433 2 45555555555 45665 33323 258889999999
Q ss_pred HHHHHHHHHHH
Q 002045 837 DRSLFLGRLIE 847 (976)
Q Consensus 837 er~~i~~~~l~ 847 (976)
+...+++..+.
T Consensus 180 el~~~L~~i~~ 190 (472)
T PRK14962 180 LIIKRLQEVAE 190 (472)
T ss_pred HHHHHHHHHHH
Confidence 99999888876
No 288
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.90 E-value=2e-09 Score=109.14 Aligned_cols=104 Identities=18% Similarity=0.282 Sum_probs=71.7
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcC---CCeeecCCcccccCCCCCChHHHHHHHHHHH----HhcCCceEeccccchh
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEK---FPVHSLGLPALLSDPSAKTPEEALVHIFGEA----RRTTPSILYIPQFNLW 776 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~---~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a----~~~~p~ilfiDEid~l 776 (976)
..+||+||+|||||.+|+++|..+.. .+++.++++.+..+ +..+..+..++..+ ......||||||||+.
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~---~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa 80 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG---DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKA 80 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH---HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc---chHHhhhhhhhhcccceeeccchhhhhhHHHhhc
Confidence 36999999999999999999999841 38999999887751 11111222222211 1122249999999998
Q ss_pred HHH-------HHHHHHHHHHHHHhhC------C---CCCCEEEEEecCCC
Q 002045 777 WEN-------AHEQLRAVLLTLLEEL------P---SHLPILLLGSSSVP 810 (976)
Q Consensus 777 ~~~-------~~~~~~~~l~~ll~~~------~---~~~~v~vi~ttn~~ 810 (976)
.+. ....+.+.|+++|+.- . +..+++||+|+|-.
T Consensus 81 ~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 81 HPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp SHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred cccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 871 3346677788888652 1 15689999999977
No 289
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.90 E-value=7.3e-09 Score=121.89 Aligned_cols=126 Identities=13% Similarity=0.208 Sum_probs=79.0
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCC----------------------------CeeecCCcccccCCCCCChHHHHHHH
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKF----------------------------PVHSLGLPALLSDPSAKTPEEALVHI 756 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~----------------------------~~~~~~~~~l~~~~~~g~~e~~~~~~ 756 (976)
.+||+||+|||||++|++||+.+.+. .++.++... ...-..++++
T Consensus 40 A~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas-------~~gVDdIReL 112 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAAS-------NRGVDEMAQL 112 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccc-------cCCHHHHHHH
Confidence 47999999999999999999987531 122222110 1113456666
Q ss_pred HHHHHh----cCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecC
Q 002045 757 FGEARR----TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEK 832 (976)
Q Consensus 757 f~~a~~----~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~ 832 (976)
.+.+.. ....|+||||+|.|.... .+.|+..|+.-+ . .++||.+||.+ ..|.+ ..+.+ -.+|.|..
T Consensus 113 ie~~~~~P~~gr~KViIIDEah~Ls~~A----aNALLKTLEEPP-~-~v~FILaTtep-~kLlp--TIrSR-Cq~f~f~~ 182 (700)
T PRK12323 113 LDKAVYAPTAGRFKVYMIDEVHMLTNHA----FNAMLKTLEEPP-E-HVKFILATTDP-QKIPV--TVLSR-CLQFNLKQ 182 (700)
T ss_pred HHHHHhchhcCCceEEEEEChHhcCHHH----HHHHHHhhccCC-C-CceEEEEeCCh-Hhhhh--HHHHH-HHhcccCC
Confidence 655432 334699999999986532 333444444322 3 44444455555 34544 22222 26788999
Q ss_pred CCHHHHHHHHHHHHH
Q 002045 833 PSTEDRSLFLGRLIE 847 (976)
Q Consensus 833 P~~~er~~i~~~~l~ 847 (976)
++.++..+.++.++.
T Consensus 183 ls~eei~~~L~~Il~ 197 (700)
T PRK12323 183 MPPGHIVSHLDAILG 197 (700)
T ss_pred CChHHHHHHHHHHHH
Confidence 999999999988886
No 290
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.7e-08 Score=110.85 Aligned_cols=187 Identities=24% Similarity=0.345 Sum_probs=122.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHh-hhHhH-HHHHHHHHHHHHH----hcCCcEEEEccc
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS-KWVGE-AERQLKLLFEEAQ----RNQPSIIFFDEI 486 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~-~~~g~-~~~~l~~~f~~a~----~~~p~VL~iDEi 486 (976)
..+|||.||+|+|||+||+.||+.+. ++|...+|..+.. .|+|+ .+..+..++..|. +.+..||||||+
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ld-----VPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEv 300 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLD-----VPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEV 300 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhC-----CCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehh
Confidence 46899999999999999999999995 9999999988875 67885 5566677766543 334559999999
Q ss_pred cccCCCCCCh---hhhhHHHHHHHHHHHhhccC-----------CCC--------cEEEEecCCCc--------------
Q 002045 487 DGLAPVRSSK---QEQIHNSIVSTLLALMDGLD-----------SRG--------QVVLIGATNRV-------------- 530 (976)
Q Consensus 487 d~L~~~r~~~---~~~~~~~~~~~Ll~~ld~~~-----------~~~--------~vivI~atn~~-------------- 530 (976)
|.|..+..+. .+-....++..||.++++.. .++ ++++|+..-..
T Consensus 301 DKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~s 380 (564)
T KOG0745|consen 301 DKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKS 380 (564)
T ss_pred hhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchh
Confidence 9998432211 12234568888999988631 112 34444321100
Q ss_pred ----------------c--c------------------------cchhhcCCCCCccccCCCCCCHHHHHHHHHH-----
Q 002045 531 ----------------D--A------------------------IDGALRRPGRFDREFNFPLPGCEARAEILDI----- 563 (976)
Q Consensus 531 ----------------~--~------------------------ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~----- 563 (976)
. . +-|.| .|||...+.|...+.+++.+||..
T Consensus 381 lGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEf--VGRfPVlVplh~L~~~~Lv~VLtEPknaL 458 (564)
T KOG0745|consen 381 LGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEF--VGRFPVLVPLHSLDEDQLVRVLTEPKNAL 458 (564)
T ss_pred cccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHH--hcccceEeeccccCHHHHHHHHhcchhhH
Confidence 0 0 11222 358999999999999999988841
Q ss_pred ------HHhc--CCCCCCHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHh
Q 002045 564 ------HTRK--WKQPPSRELKSELAASC--VGYCGADLKALCTEAAIRAFRE 606 (976)
Q Consensus 564 ------~l~~--~~~~~~~~~l~~lA~~t--~G~s~~dI~~l~~~A~~~a~~~ 606 (976)
++.. ..+.++++.++.+|... .+--++-|+.++..+.+.+.-.
T Consensus 459 ~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleamfe 511 (564)
T KOG0745|consen 459 GKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFE 511 (564)
T ss_pred HHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccc
Confidence 2221 23456677777777643 3334556777777766665543
No 291
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.89 E-value=5.6e-09 Score=105.85 Aligned_cols=117 Identities=24% Similarity=0.365 Sum_probs=77.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhHhHHHHHHHHHHHHH----HhcCCcEEEEcccc
Q 002045 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEA----QRNQPSIIFFDEID 487 (976)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a----~~~~p~VL~iDEid 487 (976)
|..++||+||+|||||.+|+++|+.+.. +...+++.++++.+.. .+.....+..++..+ ......||||||||
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~--~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEid 78 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSE--GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEID 78 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCS--HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccc--cchHHhhhhhhhhcccceeeccchhhhhhHHHh
Confidence 4568999999999999999999999962 2235888899888765 111111122221111 01111299999999
Q ss_pred ccCCCCCChhhhhHHHHHHHHHHHhhccC---------CCCcEEEEecCCCcc
Q 002045 488 GLAPVRSSKQEQIHNSIVSTLLALMDGLD---------SRGQVVLIGATNRVD 531 (976)
Q Consensus 488 ~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~---------~~~~vivI~atn~~~ 531 (976)
.+.+..+...+.....++..||..|++-. ...+++||+|+|--.
T Consensus 79 Ka~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 79 KAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp GCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred hccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 99876444455556688999999997421 124789999998744
No 292
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.89 E-value=9.2e-10 Score=116.46 Aligned_cols=136 Identities=24% Similarity=0.322 Sum_probs=83.8
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc----CCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH-
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE----KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN- 779 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~----~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~- 779 (976)
.++|+||+|+|||||..||++++. +..+++++..++...+...-....+..+....+ ...+|+||+++.+...
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~~ 113 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGKQ 113 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCch
Confidence 389999999999999999998742 456777776555432200000001122222222 3479999999998754
Q ss_pred -HHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcC---CCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 780 -AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEG---DPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 780 -~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~---~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
.++.+...+..+.. ....+|| |++.+|..|.. .+.+++.+..++.+.+|+.+.|.+|++..+.
T Consensus 114 ~~q~~lf~l~n~~~~----~~k~li~-ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~ 180 (219)
T PF00308_consen 114 RTQEELFHLFNRLIE----SGKQLIL-TSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAK 180 (219)
T ss_dssp HHHHHHHHHHHHHHH----TTSEEEE-EESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh----hCCeEEE-EeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHH
Confidence 34555555555543 3344555 55555466654 4556666668999999999999999998887
No 293
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.89 E-value=2.6e-09 Score=124.66 Aligned_cols=135 Identities=16% Similarity=0.184 Sum_probs=93.3
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc----CCCeeecCCcccccCCCCCChH---HHHHHHHHHHHhcCCceEeccccchhH
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE----KFPVHSLGLPALLSDPSAKTPE---EALVHIFGEARRTTPSILYIPQFNLWW 777 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~----~~~~~~~~~~~l~~~~~~g~~e---~~~~~~f~~a~~~~p~ilfiDEid~l~ 777 (976)
.++|+|++|||||||++++++++. +..++++.+.+++..+ ..... ..+..+.... ..+.+|+||||+.+.
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~-~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKA-VDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLS 219 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH-HHHHHHhhhHHHHHHHHh--ccCCEEEEecccccc
Confidence 599999999999999999999653 3567777776665432 11100 1122222222 245799999999987
Q ss_pred H--HHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCc---CCCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 778 E--NAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVE---GDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 778 ~--~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld---~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
. ...+.+...|+.+.+. ... ||.|+|.++..+. +.+.++|.+..++.+.+|+.++|.+|++..+.
T Consensus 220 ~k~~~~e~lf~l~N~~~~~----~k~-iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~ 289 (450)
T PRK14087 220 YKEKTNEIFFTIFNNFIEN----DKQ-LFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIK 289 (450)
T ss_pred CCHHHHHHHHHHHHHHHHc----CCc-EEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHH
Confidence 3 3556666666666543 222 4557777756653 46777887779999999999999999999887
No 294
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.88 E-value=6.1e-09 Score=125.31 Aligned_cols=199 Identities=23% Similarity=0.219 Sum_probs=123.9
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
...+|+.|+|.....+.+.+.+... .....+|||+|++|||||++|++|....... ..+|+.++|..
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~--~~pfv~i~c~~ 257 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVV-----------ARSNSTVLLRGESGTGKELIAKAIHYLSPRA--KRPFVKVNCAA 257 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCccHHHHHHHHHHhCCCC--CCCeEEeecCC
Confidence 3467889999999988888776541 1345689999999999999999999876432 35899999976
Q ss_pred HHhhhH-----hHHHHH-------HHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC--C--
Q 002045 454 VLSKWV-----GEAERQ-------LKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD--S-- 517 (976)
Q Consensus 454 l~~~~~-----g~~~~~-------l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~--~-- 517 (976)
+....+ |..... ....|..+ ...+||||||+.|. ..++..|+..++.-. .
T Consensus 258 ~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~-----------~~~Q~~Ll~~l~~~~~~~~~ 323 (534)
T TIGR01817 258 LSETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEIS-----------PAFQAKLLRVLQEGEFERVG 323 (534)
T ss_pred CCHHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCC-----------HHHHHHHHHHHhcCcEEECC
Confidence 533221 110000 00112222 24599999999884 456677777775321 0
Q ss_pred -----CCcEEEEecCCCc-cc------cchhhcCCCCC-ccccCCCCCC--HHHHHHHHHHHHhcC------CCCCCHHH
Q 002045 518 -----RGQVVLIGATNRV-DA------IDGALRRPGRF-DREFNFPLPG--CEARAEILDIHTRKW------KQPPSREL 576 (976)
Q Consensus 518 -----~~~vivI~atn~~-~~------ld~aL~r~gRf-~~~i~~~~P~--~~er~~Il~~~l~~~------~~~~~~~~ 576 (976)
..++.||++|+.. .. +.+.|.. |+ ...|.+|+.. .++...|+..++... ...++.+.
T Consensus 324 ~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a 401 (534)
T TIGR01817 324 GNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSA 401 (534)
T ss_pred CCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHH
Confidence 1146778777652 11 1122222 23 2245555443 245555666555432 24577888
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHH
Q 002045 577 KSELAASCVGYCGADLKALCTEAAI 601 (976)
Q Consensus 577 l~~lA~~t~G~s~~dI~~l~~~A~~ 601 (976)
+..|..+.=--+-++|++++..|+.
T Consensus 402 ~~~L~~~~WPGNvrEL~~v~~~a~~ 426 (534)
T TIGR01817 402 IRVLMSCKWPGNVRELENCLERTAT 426 (534)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHH
Confidence 8888877644567899999888764
No 295
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.88 E-value=8.7e-10 Score=113.04 Aligned_cols=46 Identities=43% Similarity=0.565 Sum_probs=36.3
Q ss_pred cccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHh
Q 002045 378 FDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 378 ~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~ 438 (976)
|.+|+|++.+|..|.-+..- ..|+||+||||||||++|+.+...+-
T Consensus 2 f~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred hhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999998665432 35999999999999999999997763
No 296
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.87 E-value=3.9e-09 Score=112.49 Aligned_cols=128 Identities=20% Similarity=0.170 Sum_probs=79.5
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHHH-
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENA- 780 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~- 780 (976)
..++|+||+|||||++|+++++.+. +.+++.+++..+... ...++.... .+.+|+|||++.+....
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~--~~~lLvIDdi~~l~~~~~ 107 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQA---------DPEVLEGLE--QADLVCLDDVEAIAGQPE 107 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHh---------HHHHHhhcc--cCCEEEEeChhhhcCChH
Confidence 4699999999999999999998752 356777776665432 123333332 24699999999886532
Q ss_pred -HHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCc---CCCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 781 -HEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVE---GDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 781 -~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld---~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
...+. .+++.+......+|+ |++.++..+. +.+..++....++.+++|+.+++..+++..+.
T Consensus 108 ~~~~L~----~~l~~~~~~~~~iIi-ts~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~ 173 (226)
T TIGR03420 108 WQEALF----HLYNRVREAGGRLLI-AGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAA 173 (226)
T ss_pred HHHHHH----HHHHHHHHcCCeEEE-ECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHH
Confidence 33333 344333222233444 5554433433 11222333236788999999999999987665
No 297
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.87 E-value=1e-08 Score=115.17 Aligned_cols=196 Identities=20% Similarity=0.157 Sum_probs=118.9
Q ss_pred cccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHh-
Q 002045 378 FDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS- 456 (976)
Q Consensus 378 ~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~- 456 (976)
+++|+|.......+.+.+... .....+|||+|++||||+++|++|...... ...+|+.++|..+..
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~-----------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r--~~~pfv~v~c~~~~~~ 71 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRL-----------APLDKPVLIIGERGTGKELIASRLHYLSSR--WQGPFISLNCAALNEN 71 (326)
T ss_pred cCccEECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhCCc--cCCCeEEEeCCCCCHH
Confidence 557899998888887776541 144568999999999999999999865432 236888999876532
Q ss_pred ----hhHhHHHH-------HHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC--C------
Q 002045 457 ----KWVGEAER-------QLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD--S------ 517 (976)
Q Consensus 457 ----~~~g~~~~-------~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~--~------ 517 (976)
.++|.... .....|..+. ..+||||||+.|. ..++..|+..++.-. .
T Consensus 72 ~~~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L~-----------~~~Q~~L~~~l~~~~~~~~g~~~~ 137 (326)
T PRK11608 72 LLDSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATAP-----------MLVQEKLLRVIEYGELERVGGSQP 137 (326)
T ss_pred HHHHHHccccccccCCcccccCCchhccC---CCeEEeCChhhCC-----------HHHHHHHHHHHhcCcEEeCCCCce
Confidence 12221100 0012233332 3499999999884 456667777775321 1
Q ss_pred -CCcEEEEecCCCc-------cccchhhcCCCCC-ccccCCCCCCH--HHHHHHHHHHHhc----CC----CCCCHHHHH
Q 002045 518 -RGQVVLIGATNRV-------DAIDGALRRPGRF-DREFNFPLPGC--EARAEILDIHTRK----WK----QPPSRELKS 578 (976)
Q Consensus 518 -~~~vivI~atn~~-------~~ld~aL~r~gRf-~~~i~~~~P~~--~er~~Il~~~l~~----~~----~~~~~~~l~ 578 (976)
..++.||++|+.. ..+.+.|.. || ...|.+|+.-. +++..++..++.. ++ ..++.+.+.
T Consensus 138 ~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~ 215 (326)
T PRK11608 138 LQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARE 215 (326)
T ss_pred eeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence 1246778777652 123444544 55 23444444321 3334445444322 22 246777777
Q ss_pred HHHHHccCCCHHHHHHHHHHHHHH
Q 002045 579 ELAASCVGYCGADLKALCTEAAIR 602 (976)
Q Consensus 579 ~lA~~t~G~s~~dI~~l~~~A~~~ 602 (976)
.|..+.=--+-++|++++..|+..
T Consensus 216 ~L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 216 TLLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred HHHhCCCCcHHHHHHHHHHHHHHh
Confidence 777665545678899988887653
No 298
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.86 E-value=1.8e-08 Score=122.24 Aligned_cols=131 Identities=15% Similarity=0.192 Sum_probs=78.0
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeeec----CC-----------cccccCCCCC---ChHHHHHHHHHHHHh----
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSL----GL-----------PALLSDPSAK---TPEEALVHIFGEARR---- 762 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~----~~-----------~~l~~~~~~g---~~e~~~~~~f~~a~~---- 762 (976)
.+||+||||||||++|+++|+.+.+...... .| ..++ - +.+ ..-..++.+...+..
T Consensus 40 AyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dvi-E-idAas~~kVDdIReLie~v~~~P~~ 117 (944)
T PRK14949 40 AYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLI-E-VDAASRTKVDDTRELLDNVQYRPSR 117 (944)
T ss_pred EEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEE-E-eccccccCHHHHHHHHHHHHhhhhc
Confidence 3699999999999999999999744211000 00 0011 0 011 112346666655432
Q ss_pred cCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHH
Q 002045 763 TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFL 842 (976)
Q Consensus 763 ~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~ 842 (976)
....|+||||+|.|.... .+.|+..|+.-+ ...+||++ |+.+ ..|.+ ..+.| -.+|.|.+++.++...+|
T Consensus 118 gk~KViIIDEAh~LT~eA----qNALLKtLEEPP-~~vrFILa-TTe~-~kLl~--TIlSR-Cq~f~fkpLs~eEI~~~L 187 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS----FNALLKTLEEPP-EHVKFLLA-TTDP-QKLPV--TVLSR-CLQFNLKSLTQDEIGTQL 187 (944)
T ss_pred CCcEEEEEechHhcCHHH----HHHHHHHHhccC-CCeEEEEE-CCCc-hhchH--HHHHh-heEEeCCCCCHHHHHHHH
Confidence 234699999999986433 334555554433 33344444 4445 34443 22222 268889999999999999
Q ss_pred HHHHH
Q 002045 843 GRLIE 847 (976)
Q Consensus 843 ~~~l~ 847 (976)
+.++.
T Consensus 188 ~~il~ 192 (944)
T PRK14949 188 NHILT 192 (944)
T ss_pred HHHHH
Confidence 98887
No 299
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.86 E-value=5.6e-09 Score=118.98 Aligned_cols=198 Identities=24% Similarity=0.275 Sum_probs=127.7
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
...+|++|+|-......+.+.+.. ....+.+|||.|.+||||.++|++|.+...+. ..+|+.+||+.
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr-----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~--~~PFIaiNCaA 306 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKR-----------IAKTDSTVLILGESGTGKELFARAIHNLSPRA--NGPFIAINCAA 306 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHh-----------hcCCCCcEEEecCCCccHHHHHHHHHhcCccc--CCCeEEEeccc
Confidence 568999999999988888776543 23667899999999999999999999887654 37899999975
Q ss_pred HHhh-----hHhH----HHHH----HHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC----
Q 002045 454 VLSK-----WVGE----AERQ----LKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD---- 516 (976)
Q Consensus 454 l~~~-----~~g~----~~~~----l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~---- 516 (976)
+... .+|- .... -..+|+.|..+ .||||||..| ...++..||..++.-.
T Consensus 307 iPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgem-----------pl~LQaKLLRVLQEkei~rv 372 (560)
T COG3829 307 IPETLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEM-----------PLPLQAKLLRVLQEKEIERV 372 (560)
T ss_pred CCHHHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccC-----------CHHHHHHHHHHHhhceEEec
Confidence 4332 2221 1111 12355555544 8999999877 3567788888886421
Q ss_pred -C----CCcEEEEecCCCccccchhhcCCCCCcc-------ccCCCCCCHHHHHH----HHHHHHhc----CC---CCCC
Q 002045 517 -S----RGQVVLIGATNRVDAIDGALRRPGRFDR-------EFNFPLPGCEARAE----ILDIHTRK----WK---QPPS 573 (976)
Q Consensus 517 -~----~~~vivI~atn~~~~ld~aL~r~gRf~~-------~i~~~~P~~~er~~----Il~~~l~~----~~---~~~~ 573 (976)
+ .-.|-||+|||+ .+-.++. .|+|-. ++.+..|...+|.+ +...++.+ ++ ..++
T Consensus 373 G~t~~~~vDVRIIAATN~--nL~~~i~-~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls 449 (560)
T COG3829 373 GGTKPIPVDVRIIAATNR--NLEKMIA-EGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLS 449 (560)
T ss_pred CCCCceeeEEEEEeccCc--CHHHHHh-cCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCC
Confidence 1 126889999998 3333332 244432 44555666655543 22333332 22 2256
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHH
Q 002045 574 RELKSELAASCVGYCGADLKALCTEAAI 601 (976)
Q Consensus 574 ~~~l~~lA~~t~G~s~~dI~~l~~~A~~ 601 (976)
++.+..|..+.=--+-++|++++..+..
T Consensus 450 ~~a~~~L~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 450 PDALALLLRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHh
Confidence 6666666554433356788888877764
No 300
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.85 E-value=2.8e-08 Score=120.36 Aligned_cols=141 Identities=16% Similarity=0.170 Sum_probs=83.6
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc---------CCCeeecCCcccccC------CCCCChHHH----HHHHHH------
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE---------KFPVHSLGLPALLSD------PSAKTPEEA----LVHIFG------ 758 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~---------~~~~~~~~~~~l~~~------~~~g~~e~~----~~~~f~------ 758 (976)
.+++|+||||||||++|+++++... ..+|+.+++..+-.. ...|..... .+..+.
T Consensus 176 ~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~ 255 (615)
T TIGR02903 176 QHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPE 255 (615)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCc
Confidence 4699999999999999999987652 346888887554100 001111110 011111
Q ss_pred ----HHHhcCCceEeccccchhHHHHHHHHHHHHHHHH-------------------hh-CC--CCCCEEEEEecCCCcc
Q 002045 759 ----EARRTTPSILYIPQFNLWWENAHEQLRAVLLTLL-------------------EE-LP--SHLPILLLGSSSVPLA 812 (976)
Q Consensus 759 ----~a~~~~p~ilfiDEid~l~~~~~~~~~~~l~~ll-------------------~~-~~--~~~~v~vi~ttn~~~~ 812 (976)
.......+||||||++.|-...+..++..|..-- .. ++ ....+++|++|++.+.
T Consensus 256 ~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~ 335 (615)
T TIGR02903 256 PKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPE 335 (615)
T ss_pred hhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEecccccc
Confidence 0112345799999999988777766655553210 00 00 1224555555544336
Q ss_pred cCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 813 EVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 813 ~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
.+++ +.+.++ ..+.|.+++.++...||+..+.
T Consensus 336 ~l~~--aLrSR~-~~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 336 EINP--ALRSRC-AEVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred ccCH--HHHhce-eEEEeCCCCHHHHHHHHHHHHH
Confidence 6776 322222 3667899999999999998876
No 301
>PRK05642 DNA replication initiation factor; Validated
Probab=98.85 E-value=6.9e-09 Score=111.10 Aligned_cols=128 Identities=23% Similarity=0.250 Sum_probs=84.7
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH--
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-- 779 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~-- 779 (976)
..++|+|++|||||||+.++++++. +..++.++..+++.. ...+++..+.. .+|+||+++.+.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~---------~~~~~~~~~~~--d~LiiDDi~~~~~~~~ 114 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR---------GPELLDNLEQY--ELVCLDDLDVIAGKAD 114 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh---------hHHHHHhhhhC--CEEEEechhhhcCChH
Confidence 3589999999999999999998643 456677776665532 12233333332 58999999988643
Q ss_pred HHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCc---CCCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 780 AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVE---GDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 780 ~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld---~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
....+...++.+. .....+||+++..| ..+. +.+.+|+.+..++.+..|+.++|..+++..+.
T Consensus 115 ~~~~Lf~l~n~~~----~~g~~ilits~~~p-~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~ 180 (234)
T PRK05642 115 WEEALFHLFNRLR----DSGRRLLLAASKSP-RELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRAS 180 (234)
T ss_pred HHHHHHHHHHHHH----hcCCEEEEeCCCCH-HHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence 2344444444333 33455666555545 4443 35566665558899999999999999996544
No 302
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.84 E-value=1.2e-08 Score=98.74 Aligned_cols=131 Identities=33% Similarity=0.457 Sum_probs=76.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhh--------------hHhHHHHHHHHHHHHHHhcCC
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSK--------------WVGEAERQLKLLFEEAQRNQP 478 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~--------------~~g~~~~~l~~~f~~a~~~~p 478 (976)
+.+++|+||||||||++++.+|..+.... ..++.+++...... ...........++..+....+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 46899999999999999999999987553 13444444432221 112344556677888887778
Q ss_pred cEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCC-ccccchhhcCCCCCccccCCCCC
Q 002045 479 SIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR-VDAIDGALRRPGRFDREFNFPLP 552 (976)
Q Consensus 479 ~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~-~~~ld~aL~r~gRf~~~i~~~~P 552 (976)
.||||||++.+........ ..................+.+|+++|. ....+..+.. |++..+.+..+
T Consensus 80 ~viiiDei~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 80 DVLILDEITSLLDAEQEAL-----LLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred CEEEEECCcccCCHHHHHH-----HHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 8999999998863211100 000000000111122345678888885 3334444444 66666665543
No 303
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.84 E-value=5.6e-08 Score=101.43 Aligned_cols=185 Identities=21% Similarity=0.211 Sum_probs=132.6
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC---c--------
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ---K-------- 443 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~---~-------- 443 (976)
.-+++.+.+.++....|+..... ..-.|+|+|||+|+||-|.+.++-+++...|. +
T Consensus 9 pksl~~l~~~~e~~~~Lksl~~~-------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~t 75 (351)
T KOG2035|consen 9 PKSLDELIYHEELANLLKSLSST-------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTT 75 (351)
T ss_pred cchhhhcccHHHHHHHHHHhccc-------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEec
Confidence 45677788888888888776531 11248999999999999999999999865331 1
Q ss_pred -----EEEEEecch---hHHhhhHhHHH-HHHHHHHHHHHhcC---------CcEEEEccccccCCCCCChhhhhHHHHH
Q 002045 444 -----VSFYMRKGA---DVLSKWVGEAE-RQLKLLFEEAQRNQ---------PSIIFFDEIDGLAPVRSSKQEQIHNSIV 505 (976)
Q Consensus 444 -----~~~~~~~~~---~l~~~~~g~~~-~~l~~~f~~a~~~~---------p~VL~iDEid~L~~~r~~~~~~~~~~~~ 505 (976)
+.+..++.. ++.....|... ..++.++++..+.+ ..|++|-|+|.| ..+.+
T Consensus 76 pS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L-----------T~dAQ 144 (351)
T KOG2035|consen 76 PSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL-----------TRDAQ 144 (351)
T ss_pred CCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh-----------hHHHH
Confidence 111111111 01111233222 23455555544332 248999999988 57788
Q ss_pred HHHHHHhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcc
Q 002045 506 STLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCV 585 (976)
Q Consensus 506 ~~Ll~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~ 585 (976)
..|...|+.+.. ++-+|..+|....+-+++++ |+ ..|.+|.|+.++...++...+.+.++.+..+++..+|..+.
T Consensus 145 ~aLRRTMEkYs~--~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~ 219 (351)
T KOG2035|consen 145 HALRRTMEKYSS--NCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSN 219 (351)
T ss_pred HHHHHHHHHHhc--CceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhc
Confidence 889999996644 56677788888888899988 65 56899999999999999999999999999999999999988
Q ss_pred CCC
Q 002045 586 GYC 588 (976)
Q Consensus 586 G~s 588 (976)
|--
T Consensus 220 ~nL 222 (351)
T KOG2035|consen 220 RNL 222 (351)
T ss_pred ccH
Confidence 743
No 304
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.84 E-value=1.7e-08 Score=97.77 Aligned_cols=106 Identities=23% Similarity=0.290 Sum_probs=73.2
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCC--CeeecCCcccccC-------------CCCCChHHHHHHHHHHHHhcCCceE
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKF--PVHSLGLPALLSD-------------PSAKTPEEALVHIFGEARRTTPSIL 768 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~--~~~~~~~~~l~~~-------------~~~g~~e~~~~~~f~~a~~~~p~il 768 (976)
..++|+||||||||++++.+|..+... .++.+++...... ............++..|+...|+||
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 469999999999999999999998555 4888887654321 1224556677788999998888999
Q ss_pred eccccchhHHHHHHHHHHHH--HHHHhhCCCCCCEEEEEecCC
Q 002045 769 YIPQFNLWWENAHEQLRAVL--LTLLEELPSHLPILLLGSSSV 809 (976)
Q Consensus 769 fiDEid~l~~~~~~~~~~~l--~~ll~~~~~~~~v~vi~ttn~ 809 (976)
||||++.+............ ...+........+.||+++|.
T Consensus 83 iiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 83 ILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred EEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 99999998865433322110 011112223556778888884
No 305
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.84 E-value=2.7e-09 Score=125.84 Aligned_cols=79 Identities=23% Similarity=0.490 Sum_probs=74.4
Q ss_pred hHhhhhhhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 898 RLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 898 eLr~~L~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
.+...+..++..+.+|..+|+|..||...++|+|+.+|++||||.||+.+|..++|.....|++|+..||+||+.||.+
T Consensus 606 ~~~s~~~~il~~l~~h~~awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~~ 684 (720)
T KOG1472|consen 606 KLFSAIQNILDQLQNHGDAWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNGS 684 (720)
T ss_pred hhhHHHHhHHhhhhcCCccCCccCccccccCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCCc
Confidence 3556667889999999999999999999999999999999999999999999999999999999999999999999964
No 306
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.83 E-value=7.7e-09 Score=101.46 Aligned_cols=109 Identities=28% Similarity=0.397 Sum_probs=67.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh------HHhhhHhH--HHHHH-HHHHHHHHhcCCcEEEEcc
Q 002045 415 GVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD------VLSKWVGE--AERQL-KLLFEEAQRNQPSIIFFDE 485 (976)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~------l~~~~~g~--~~~~l-~~~f~~a~~~~p~VL~iDE 485 (976)
+|||+||||||||++|+.+|..++ .+++.+.+.. ++..+.-. ..... ..+...+. .++||||||
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDE 73 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDE 73 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHhh-----cceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECC
Confidence 589999999999999999999994 4444444432 22221110 00000 00000111 467999999
Q ss_pred ccccCCCCCChhhhhHHHHHHHHHHHhhccC-----------CCC------cEEEEecCCCcc----ccchhhcCCCCC
Q 002045 486 IDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-----------SRG------QVVLIGATNRVD----AIDGALRRPGRF 543 (976)
Q Consensus 486 id~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~-----------~~~------~vivI~atn~~~----~ld~aL~r~gRf 543 (976)
|+.. ...++..|+.+++.-. ... ++.||+|+|+.. .++++|++ ||
T Consensus 74 in~a-----------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 74 INRA-----------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp CGG-------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred cccC-----------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 9866 4667777877776321 011 389999999988 79999998 77
No 307
>PRK08727 hypothetical protein; Validated
Probab=98.83 E-value=9.8e-09 Score=109.87 Aligned_cols=127 Identities=17% Similarity=0.094 Sum_probs=82.5
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcC--CCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH--H
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEK--FPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN--A 780 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~--~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~--~ 780 (976)
.++|+|++|||||||+.++++.+.. ..++.+...++. ..+..++.... ...+|+||||+.+... .
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~---------~~~~~~~~~l~--~~dlLiIDDi~~l~~~~~~ 111 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA---------GRLRDALEALE--GRSLVALDGLESIAGQRED 111 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh---------hhHHHHHHHHh--cCCEEEEeCcccccCChHH
Confidence 4999999999999999999887432 334444433322 23344555443 3469999999988643 2
Q ss_pred HHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcC---CCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 781 HEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEG---DPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 781 ~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~---~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
...+. .++...... +.-||.|+|.++..+.. .+.+++.+..++.|++|+.+++..|++.++.
T Consensus 112 ~~~lf----~l~n~~~~~-~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~ 176 (233)
T PRK08727 112 EVALF----DFHNRARAA-GITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQ 176 (233)
T ss_pred HHHHH----HHHHHHHHc-CCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHH
Confidence 22333 344333212 33355667767677743 4445554457899999999999999998766
No 308
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.83 E-value=9.2e-09 Score=125.64 Aligned_cols=125 Identities=22% Similarity=0.321 Sum_probs=82.5
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHh-----cCCceEeccccchhHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARR-----TTPSILYIPQFNLWWE 778 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~-----~~p~ilfiDEid~l~~ 778 (976)
+++||+||||||||++|+++++.+ ..+|+.++... . | ...++.++..+.. ....||||||||.+..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~-~~~f~~lna~~--~----~--i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~ 123 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHT-RAHFSSLNAVL--A----G--VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK 123 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh-cCcceeehhhh--h----h--hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH
Confidence 479999999999999999999987 56777776431 1 1 1234444444321 2356999999999876
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCEEEEEec-CCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHHH
Q 002045 779 NAHEQLRAVLLTLLEELPSHLPILLLGSS-SVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (976)
Q Consensus 779 ~~~~~~~~~l~~ll~~~~~~~~v~vi~tt-n~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~~ 848 (976)
..++. |+..+ +. ..+++|++| ..+...+++ +.+.+ ..++.|++++.+++..|++..+..
T Consensus 124 ~qQda----LL~~l---E~-g~IiLI~aTTenp~~~l~~--aL~SR-~~v~~l~pLs~edi~~IL~~~l~~ 183 (725)
T PRK13341 124 AQQDA----LLPWV---EN-GTITLIGATTENPYFEVNK--ALVSR-SRLFRLKSLSDEDLHQLLKRALQD 183 (725)
T ss_pred HHHHH----HHHHh---cC-ceEEEEEecCCChHhhhhh--Hhhcc-ccceecCCCCHHHHHHHHHHHHHH
Confidence 54443 33333 33 345555554 444334555 33322 257889999999999999988873
No 309
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.82 E-value=6.3e-09 Score=122.73 Aligned_cols=145 Identities=13% Similarity=0.206 Sum_probs=90.5
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCC-----------------------CeeecCCcccccCCCCCChHHHHHHHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKF-----------------------PVHSLGLPALLSDPSAKTPEEALVHIFGEA 760 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~-----------------------~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a 760 (976)
..+||+||+|||||++|+++|+.+... .++.++.++ ...-..++.+...+
T Consensus 38 HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs-------~~~VddIReli~~~ 110 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAAS-------RTKVEDTRELLDNV 110 (702)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccc-------cCCHHHHHHHHHHH
Confidence 358999999999999999999987432 122232211 11234566666654
Q ss_pred Hh----cCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHH
Q 002045 761 RR----TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTE 836 (976)
Q Consensus 761 ~~----~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~ 836 (976)
.. ....|+||||+|.|... ..+.|+..|+..+. ..+||++| +.+ ..+.. ..+ +.-.++.|.+++.+
T Consensus 111 ~y~P~~gk~KV~IIDEVh~LS~~----A~NALLKtLEEPP~-~v~FILaT-td~-~kIp~--TIl-SRCq~feFkpLs~e 180 (702)
T PRK14960 111 PYAPTQGRFKVYLIDEVHMLSTH----SFNALLKTLEEPPE-HVKFLFAT-TDP-QKLPI--TVI-SRCLQFTLRPLAVD 180 (702)
T ss_pred hhhhhcCCcEEEEEechHhcCHH----HHHHHHHHHhcCCC-CcEEEEEE-CCh-HhhhH--HHH-HhhheeeccCCCHH
Confidence 32 23469999999998654 34456667765443 33444444 445 34443 222 21268889999999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCC
Q 002045 837 DRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVP 874 (976)
Q Consensus 837 er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~ 874 (976)
+....++.++.+ .+...++..+..|+...
T Consensus 181 EI~k~L~~Il~k---------EgI~id~eAL~~IA~~S 209 (702)
T PRK14960 181 EITKHLGAILEK---------EQIAADQDAIWQIAESA 209 (702)
T ss_pred HHHHHHHHHHHH---------cCCCCCHHHHHHHHHHc
Confidence 999999988874 23333344455555554
No 310
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.82 E-value=1.2e-08 Score=114.58 Aligned_cols=127 Identities=14% Similarity=0.129 Sum_probs=83.5
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHH-HHHHHHh----cCCceEeccccchhHHH
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVH-IFGEARR----TTPSILYIPQFNLWWEN 779 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~-~f~~a~~----~~p~ilfiDEid~l~~~ 779 (976)
.+||+||||+|||++|+++++.+ +.+++.+++.. .. -..++. +...+.. ..+.||||||+|.+...
T Consensus 45 ~lll~G~~G~GKT~la~~l~~~~-~~~~~~i~~~~--~~------~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~ 115 (316)
T PHA02544 45 MLLHSPSPGTGKTTVAKALCNEV-GAEVLFVNGSD--CR------IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA 115 (316)
T ss_pred EEEeeCcCCCCHHHHHHHHHHHh-CccceEeccCc--cc------HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH
Confidence 35669999999999999999987 66788877654 11 112222 1111111 35789999999988322
Q ss_pred HHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHHHH
Q 002045 780 AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAA 849 (976)
Q Consensus 780 ~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~~~ 849 (976)
. ....|..+|+..+. .+.||.|||.+ ..+.+.+..++ .++.|+.|+.+++..+++.++...
T Consensus 116 ~---~~~~L~~~le~~~~--~~~~Ilt~n~~-~~l~~~l~sR~---~~i~~~~p~~~~~~~il~~~~~~~ 176 (316)
T PHA02544 116 D---AQRHLRSFMEAYSK--NCSFIITANNK-NGIIEPLRSRC---RVIDFGVPTKEEQIEMMKQMIVRC 176 (316)
T ss_pred H---HHHHHHHHHHhcCC--CceEEEEcCCh-hhchHHHHhhc---eEEEeCCCCHHHHHHHHHHHHHHH
Confidence 1 23445666666543 44566688877 55655222222 477899999999999998877654
No 311
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.81 E-value=8.8e-09 Score=127.25 Aligned_cols=127 Identities=17% Similarity=0.197 Sum_probs=80.3
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCC-------------------------CeeecCCcccccCCCCCChHHHHHHHHHH
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKF-------------------------PVHSLGLPALLSDPSAKTPEEALVHIFGE 759 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~-------------------------~~~~~~~~~l~~~~~~g~~e~~~~~~f~~ 759 (976)
.+||+||+|||||++|++||+.|.+. .|+.++.... ..-..++.+.+.
T Consensus 39 a~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~-------~~Vd~iR~l~~~ 111 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASH-------GGVDDARELRER 111 (824)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEeccccc-------CCHHHHHHHHHH
Confidence 48999999999999999999998421 1222221110 012344444333
Q ss_pred HH----hcCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCH
Q 002045 760 AR----RTTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPST 835 (976)
Q Consensus 760 a~----~~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~ 835 (976)
+. .....|+||||+|.|... ..+.|+.+|+..+. ..+||++| +.+ +.|.+ .+++.-.+|.|..++.
T Consensus 112 ~~~~p~~~~~KV~IIDEad~lt~~----a~NaLLK~LEEpP~-~~~fIl~t-t~~-~kLl~---TIrSRc~~v~F~~l~~ 181 (824)
T PRK07764 112 AFFAPAESRYKIFIIDEAHMVTPQ----GFNALLKIVEEPPE-HLKFIFAT-TEP-DKVIG---TIRSRTHHYPFRLVPP 181 (824)
T ss_pred HHhchhcCCceEEEEechhhcCHH----HHHHHHHHHhCCCC-CeEEEEEe-CCh-hhhhH---HHHhheeEEEeeCCCH
Confidence 22 234569999999998753 34567777776554 34444444 544 33332 2333237888999999
Q ss_pred HHHHHHHHHHHHH
Q 002045 836 EDRSLFLGRLIEA 848 (976)
Q Consensus 836 ~er~~i~~~~l~~ 848 (976)
++...+|+.++.+
T Consensus 182 ~~l~~~L~~il~~ 194 (824)
T PRK07764 182 EVMRGYLERICAQ 194 (824)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888763
No 312
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=1.6e-08 Score=115.61 Aligned_cols=134 Identities=17% Similarity=0.198 Sum_probs=80.3
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeeecC---------------Cccccc-CCCCCChHHHHHHHHHHHHhc----C
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLG---------------LPALLS-DPSAKTPEEALVHIFGEARRT----T 764 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~---------------~~~l~~-~~~~g~~e~~~~~~f~~a~~~----~ 764 (976)
.+||+||||||||++|+++|+.+.+..-...+ .++++. .......-..++.+...+... .
T Consensus 40 ~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~ 119 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSR 119 (363)
T ss_pred EEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCC
Confidence 47999999999999999999987421111000 011110 000012234566776655432 2
Q ss_pred CceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHH
Q 002045 765 PSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGR 844 (976)
Q Consensus 765 p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~ 844 (976)
..|+||||+|.+.... .+.|+..|+..+. .+.+|.+|+.+ +.|.+.+.++. .++.|.+|+.++...+++.
T Consensus 120 ~kviIIDEa~~l~~~a----~naLLk~lEe~~~--~~~fIl~t~~~-~~l~~tI~SRc---~~~~~~~l~~~el~~~L~~ 189 (363)
T PRK14961 120 FKVYLIDEVHMLSRHS----FNALLKTLEEPPQ--HIKFILATTDV-EKIPKTILSRC---LQFKLKIISEEKIFNFLKY 189 (363)
T ss_pred ceEEEEEChhhcCHHH----HHHHHHHHhcCCC--CeEEEEEcCCh-HhhhHHHHhhc---eEEeCCCCCHHHHHHHHHH
Confidence 3599999999986433 3345556655433 34444455555 44554222222 5788999999999999998
Q ss_pred HHHH
Q 002045 845 LIEA 848 (976)
Q Consensus 845 ~l~~ 848 (976)
.+..
T Consensus 190 ~~~~ 193 (363)
T PRK14961 190 ILIK 193 (363)
T ss_pred HHHH
Confidence 8873
No 313
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.80 E-value=2.7e-08 Score=111.95 Aligned_cols=205 Identities=26% Similarity=0.250 Sum_probs=125.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
.+..+.+|+|-....+++++.+.. + .+...+|||+|++||||+++|++|....... ...+|+.+||+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~----------~-ap~~~~vLi~GetGtGKel~A~~iH~~s~r~-~~~PFI~~NCa~ 140 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKA----------Y-APSGLPVLIIGETGTGKELFARLIHALSARR-AEAPFIAFNCAA 140 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHh----------h-CCCCCcEEEecCCCccHHHHHHHHHHhhhcc-cCCCEEEEEHHH
Confidence 456788999988888877776644 1 2556789999999999999999999554443 568999999987
Q ss_pred HHhhh-----HhHH-------HHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhcc-----C
Q 002045 454 VLSKW-----VGEA-------ERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGL-----D 516 (976)
Q Consensus 454 l~~~~-----~g~~-------~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~-----~ 516 (976)
+.... +|.. ...-..+|+.|..+ +||+|||+.|. ...+..|+..|+.- .
T Consensus 141 ~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GG---tLfLDEI~~LP-----------~~~Q~kLl~~le~g~~~rvG 206 (403)
T COG1221 141 YSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGG---TLFLDEIHRLP-----------PEGQEKLLRVLEEGEYRRVG 206 (403)
T ss_pred hCcCHHHHHHhccccceeecccCCcCchheecCCC---EEehhhhhhCC-----------HhHHHHHHHHHHcCceEecC
Confidence 65432 2211 11222455555444 99999999985 34566788888742 1
Q ss_pred ----CCCcEEEEecCCC--ccccch--hhcCCCCCccccCCCCCCH--HHHHHHHHH----HHhcCCCCCC---HHHHHH
Q 002045 517 ----SRGQVVLIGATNR--VDAIDG--ALRRPGRFDREFNFPLPGC--EARAEILDI----HTRKWKQPPS---RELKSE 579 (976)
Q Consensus 517 ----~~~~vivI~atn~--~~~ld~--aL~r~gRf~~~i~~~~P~~--~er~~Il~~----~l~~~~~~~~---~~~l~~ 579 (976)
....|.+|+||+. .+.+-. .|.+. ++..+|.+|+.-. +++..++.. ++++.+.... .+.+..
T Consensus 207 ~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~ 285 (403)
T COG1221 207 GSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRA 285 (403)
T ss_pred CCCCcCCCceeeeccccCHHHHHHhhcchhhh-hcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 1236778887765 222222 33220 3444555544332 233333333 3344444332 244444
Q ss_pred HHHHccCCCHHHHHHHHHHHHHHHHH
Q 002045 580 LAASCVGYCGADLKALCTEAAIRAFR 605 (976)
Q Consensus 580 lA~~t~G~s~~dI~~l~~~A~~~a~~ 605 (976)
|-.+.---+-+++++++..++..+..
T Consensus 286 L~~y~~pGNirELkN~Ve~~~~~~~~ 311 (403)
T COG1221 286 LLAYDWPGNIRELKNLVERAVAQASG 311 (403)
T ss_pred HHhCCCCCcHHHHHHHHHHHHHHhcc
Confidence 54443333668999999988876644
No 314
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.80 E-value=2.8e-08 Score=117.54 Aligned_cols=199 Identities=22% Similarity=0.305 Sum_probs=119.3
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHh------hcCCcEEEEE
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAAS------KAGQKVSFYM 448 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~------~~~~~~~~~~ 448 (976)
..+|++|+|.....+.+++.+... .....+|||+|++||||+++|++|...+. ......+|+.
T Consensus 215 ~~~f~~iiG~S~~m~~~~~~i~~~-----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~ 283 (538)
T PRK15424 215 RYVLGDLLGQSPQMEQVRQTILLY-----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 283 (538)
T ss_pred ccchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEE
Confidence 356889999999988888876541 13456899999999999999999998721 1123468999
Q ss_pred ecchhHHhhh-----HhHHHH--------HHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhcc
Q 002045 449 RKGADVLSKW-----VGEAER--------QLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGL 515 (976)
Q Consensus 449 ~~~~~l~~~~-----~g~~~~--------~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~ 515 (976)
++|+.+.... +|.... .-..+|+.+.. ..||||||+.|. ..++..|+..++..
T Consensus 284 inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp-----------~~~Q~kLl~~L~e~ 349 (538)
T PRK15424 284 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEMP-----------LPLQTRLLRVLEEK 349 (538)
T ss_pred eecccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhCC-----------HHHHHHHHhhhhcC
Confidence 9998654321 221110 01124444433 499999999883 55677788877632
Q ss_pred C-----C----CCcEEEEecCCCccccchhhcCCCCCc-------cccCCCCCCHHHHH----HHHHHHHhc----CCCC
Q 002045 516 D-----S----RGQVVLIGATNRVDAIDGALRRPGRFD-------REFNFPLPGCEARA----EILDIHTRK----WKQP 571 (976)
Q Consensus 516 ~-----~----~~~vivI~atn~~~~ld~aL~r~gRf~-------~~i~~~~P~~~er~----~Il~~~l~~----~~~~ 571 (976)
. . .-++.||++||.. +...+ ..|+|. ..+.+..|...+|. .++..++.. .+..
T Consensus 350 ~~~r~G~~~~~~~dvRiIaat~~~--L~~~v-~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~ 426 (538)
T PRK15424 350 EVTRVGGHQPVPVDVRVISATHCD--LEEDV-RQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAP 426 (538)
T ss_pred eEEecCCCceeccceEEEEecCCC--HHHHH-hcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCC
Confidence 1 1 1245788888762 22111 223332 13445556555544 445555544 4445
Q ss_pred CCHHHH-------HHHHHHccCCCHHHHHHHHHHHHH
Q 002045 572 PSRELK-------SELAASCVGYCGADLKALCTEAAI 601 (976)
Q Consensus 572 ~~~~~l-------~~lA~~t~G~s~~dI~~l~~~A~~ 601 (976)
++...+ ..|..+.=--+-++|++++..++.
T Consensus 427 ~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i 463 (538)
T PRK15424 427 FSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLAL 463 (538)
T ss_pred CCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 555543 222222222356889999888775
No 315
>PLN03025 replication factor C subunit; Provisional
Probab=98.80 E-value=8.4e-09 Score=115.87 Aligned_cols=128 Identities=18% Similarity=0.188 Sum_probs=79.9
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCC----CeeecCCcccccCCCCCChHHHHHHHHHH-HHh------cCCceEeccc
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKF----PVHSLGLPALLSDPSAKTPEEALVHIFGE-ARR------TTPSILYIPQ 772 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~----~~~~~~~~~l~~~~~~g~~e~~~~~~f~~-a~~------~~p~ilfiDE 772 (976)
+++||+||||||||++|+++|+++.+. .++.++.++..+ -..++.+... +.. ..+.||+|||
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~-------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE 107 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRG-------IDVVRNKIKMFAQKKVTLPPGRHKIVILDE 107 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccccc-------HHHHHHHHHHHHhccccCCCCCeEEEEEec
Confidence 479999999999999999999987432 345555443221 1123333222 111 2357999999
Q ss_pred cchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHHH
Q 002045 773 FNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (976)
Q Consensus 773 id~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~~ 848 (976)
+|.+....+. .|...|+..... ..+|+ ++|.. ..+.+ + +++.-.++.|.+|+.++....++.++.+
T Consensus 108 ~d~lt~~aq~----aL~~~lE~~~~~-t~~il-~~n~~-~~i~~--~-L~SRc~~i~f~~l~~~~l~~~L~~i~~~ 173 (319)
T PLN03025 108 ADSMTSGAQQ----ALRRTMEIYSNT-TRFAL-ACNTS-SKIIE--P-IQSRCAIVRFSRLSDQEILGRLMKVVEA 173 (319)
T ss_pred hhhcCHHHHH----HHHHHHhcccCC-ceEEE-EeCCc-cccch--h-HHHhhhcccCCCCCHHHHHHHHHHHHHH
Confidence 9998765543 355555544433 33444 45555 23333 2 2231267889999999999999888763
No 316
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.79 E-value=1.2e-08 Score=114.62 Aligned_cols=202 Identities=23% Similarity=0.258 Sum_probs=131.3
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhH
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l 454 (976)
...+..|||...+..++.+.|.. -.....+|||+|.+||||..+|++|.+...+. ..+|+.+||+.+
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~-----------VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~--~kPfV~~NCAAl 285 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEV-----------VAKSDSTVLIRGETGTGKELVARAIHQLSPRR--DKPFVKLNCAAL 285 (550)
T ss_pred hcccccceecCHHHHHHHHHHHH-----------HhcCCCeEEEecCCCccHHHHHHHHHhhCccc--CCCceeeecccc
Confidence 56788999999999998887765 13567899999999999999999999887655 368999999766
Q ss_pred HhhhHhH-HHHHHHHHHHHHHhc--------CCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC-----CC--
Q 002045 455 LSKWVGE-AERQLKLLFEEAQRN--------QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-----SR-- 518 (976)
Q Consensus 455 ~~~~~g~-~~~~l~~~f~~a~~~--------~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~-----~~-- 518 (976)
....... --...+..|.-|... ....||+|||..|. -.++..||..++.-. ..
T Consensus 286 PesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelP-----------L~lQaKLLRvLQegEieRvG~~r~ 354 (550)
T COG3604 286 PESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELP-----------LALQAKLLRVLQEGEIERVGGDRT 354 (550)
T ss_pred chHHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCC-----------HHHHHHHHHHHhhcceeecCCCce
Confidence 4332110 001112223222221 13499999998773 456677777775321 11
Q ss_pred --CcEEEEecCCCccccchhhcCCCCCcc-------ccCCCCCCHHHHHH----HHHHHHh----cC---CCCCCHHHHH
Q 002045 519 --GQVVLIGATNRVDAIDGALRRPGRFDR-------EFNFPLPGCEARAE----ILDIHTR----KW---KQPPSRELKS 578 (976)
Q Consensus 519 --~~vivI~atn~~~~ld~aL~r~gRf~~-------~i~~~~P~~~er~~----Il~~~l~----~~---~~~~~~~~l~ 578 (976)
-.|-||++||+ .|..+++. |+|-. ++.+..|..-+|.. +...++. .+ .+.++.+.++
T Consensus 355 ikVDVRiIAATNR--DL~~~V~~-G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~ 431 (550)
T COG3604 355 IKVDVRVIAATNR--DLEEMVRD-GEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALE 431 (550)
T ss_pred eEEEEEEEeccch--hHHHHHHc-CcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHH
Confidence 25889999998 44444433 45532 33444555544432 2222222 22 3456778877
Q ss_pred HHHHHccCCCHHHHHHHHHHHHHHH
Q 002045 579 ELAASCVGYCGADLKALCTEAAIRA 603 (976)
Q Consensus 579 ~lA~~t~G~s~~dI~~l~~~A~~~a 603 (976)
.|..+.---+-+++++++..|+..|
T Consensus 432 ~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 432 LLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 7777665557799999999999877
No 317
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.79 E-value=2.2e-08 Score=118.46 Aligned_cols=198 Identities=22% Similarity=0.279 Sum_probs=119.1
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhH
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l 454 (976)
..+|++|+|.....+.+.+.+... .....+|||+|++||||+++|++|.+.... ...+|+.++|..+
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~-----------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r--~~~pfv~inC~~l 274 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLY-----------ARSDATVLILGESGTGKELVAQAIHQLSGR--RDFPFVAINCGAI 274 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCcCHHHHHHHHHHhcCc--CCCCEEEeccccC
Confidence 467899999999888888876441 134568999999999999999999976533 2468999999765
Q ss_pred Hhhh-----HhHHHH--------HHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC-----
Q 002045 455 LSKW-----VGEAER--------QLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD----- 516 (976)
Q Consensus 455 ~~~~-----~g~~~~--------~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~----- 516 (976)
.... +|.... .-..+|+.+.. ..||||||+.|. ..++..|+..++.-.
T Consensus 275 ~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp-----------~~~Q~~Ll~~L~~~~~~r~g 340 (526)
T TIGR02329 275 AESLLEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEMP-----------LPLQTRLLRVLEEREVVRVG 340 (526)
T ss_pred ChhHHHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhCC-----------HHHHHHHHHHHhcCcEEecC
Confidence 4321 221100 01223444433 499999999883 556777887775321
Q ss_pred C----CCcEEEEecCCCcc--ccc-----hhhcCCCCCccccCCCCCCHHHH----HHHHHHHHhc----CCCCCCHHHH
Q 002045 517 S----RGQVVLIGATNRVD--AID-----GALRRPGRFDREFNFPLPGCEAR----AEILDIHTRK----WKQPPSRELK 577 (976)
Q Consensus 517 ~----~~~vivI~atn~~~--~ld-----~aL~r~gRf~~~i~~~~P~~~er----~~Il~~~l~~----~~~~~~~~~l 577 (976)
. .-++-||++|+..- .+. ..|.. |+. .+.+..|...+| ..++..++.. ....++.+.+
T Consensus 341 ~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~ 417 (526)
T TIGR02329 341 GTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLS-ILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAA 417 (526)
T ss_pred CCceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcC-CcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 1 11346777776631 121 12221 231 234445555444 4444555543 2344666665
Q ss_pred HH-------HHHHccCCCHHHHHHHHHHHHHH
Q 002045 578 SE-------LAASCVGYCGADLKALCTEAAIR 602 (976)
Q Consensus 578 ~~-------lA~~t~G~s~~dI~~l~~~A~~~ 602 (976)
.. |..+.=--+-++|++++..++..
T Consensus 418 ~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 418 QVLAGVADPLQRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred HHhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 44 44333333567888888887754
No 318
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=2.4e-08 Score=114.20 Aligned_cols=131 Identities=21% Similarity=0.190 Sum_probs=81.7
Q ss_pred CCceeeccCCCCcHhhHHHHHHHhhcCCC--------------eeecCCccc--ccCCCCCChHHHHHHHHHHHHhc---
Q 002045 703 RPRLLLCGSEGTGVDHLGPAILHELEKFP--------------VHSLGLPAL--LSDPSAKTPEEALVHIFGEARRT--- 763 (976)
Q Consensus 703 ~~~~Ll~G~pGtGKT~lA~aia~~l~~~~--------------~~~~~~~~l--~~~~~~g~~e~~~~~~f~~a~~~--- 763 (976)
+..+||+||||+|||++|+++|..+.... +..-+-+++ +......-.-..++.+++.+...
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~ 115 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPST 115 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCccc
Confidence 34699999999999999999999763321 000000111 00000001124578888877642
Q ss_pred -CCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHH
Q 002045 764 -TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFL 842 (976)
Q Consensus 764 -~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~ 842 (976)
...|+||||+|.+..... +.|+..|+.-+ ...++||+|++ + ..|.+ ..+.+ -.++.|++|+.++...+|
T Consensus 116 ~~~kViiIDead~m~~~aa----naLLk~LEep~-~~~~fIL~a~~-~-~~llp--TIrSR-c~~i~f~~~~~~~i~~~L 185 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAA----NALLKAVEEPP-PRTVWLLCAPS-P-EDVLP--TIRSR-CRHVALRTPSVEAVAEVL 185 (394)
T ss_pred CCcEEEEEechhhcCHHHH----HHHHHHhhcCC-CCCeEEEEECC-h-HHChH--HHHhh-CeEEECCCCCHHHHHHHH
Confidence 235999999999865433 45666665533 45667776666 5 56665 33333 258889999999987777
Q ss_pred H
Q 002045 843 G 843 (976)
Q Consensus 843 ~ 843 (976)
.
T Consensus 186 ~ 186 (394)
T PRK07940 186 V 186 (394)
T ss_pred H
Confidence 5
No 319
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.79 E-value=1.5e-08 Score=119.57 Aligned_cols=127 Identities=16% Similarity=0.210 Sum_probs=79.8
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCC----------------------eeecCCcccccCCCCCChHHHHHHHHHHHHh
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFP----------------------VHSLGLPALLSDPSAKTPEEALVHIFGEARR 762 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~----------------------~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~ 762 (976)
.+||+||||||||++|+++|+.+.... ++.++... ...-..++.+...+..
T Consensus 38 a~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~-------~~~vd~iR~l~~~~~~ 110 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAAS-------NNSVEDVRDLREKVLL 110 (504)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccc-------cCCHHHHHHHHHHHhh
Confidence 369999999999999999999874211 33333210 1123346666544432
Q ss_pred ----cCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHH
Q 002045 763 ----TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDR 838 (976)
Q Consensus 763 ----~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er 838 (976)
..+.||+|||+|.+.. ...+.|+..|+... ..+++|.+|+.+ ..+.+ ..+.+ -.++.|.+|+.++.
T Consensus 111 ~p~~~~~kVVIIDEad~ls~----~a~naLLk~LEep~--~~t~~Il~t~~~-~kl~~--~I~SR-c~~~~f~~ls~~el 180 (504)
T PRK14963 111 APLRGGRKVYILDEAHMMSK----SAFNALLKTLEEPP--EHVIFILATTEP-EKMPP--TILSR-TQHFRFRRLTEEEI 180 (504)
T ss_pred ccccCCCeEEEEECccccCH----HHHHHHHHHHHhCC--CCEEEEEEcCCh-hhCCh--HHhcc-eEEEEecCCCHHHH
Confidence 3456999999998753 22344445554432 244555556666 45554 22222 25788999999999
Q ss_pred HHHHHHHHHH
Q 002045 839 SLFLGRLIEA 848 (976)
Q Consensus 839 ~~i~~~~l~~ 848 (976)
...++.++..
T Consensus 181 ~~~L~~i~~~ 190 (504)
T PRK14963 181 AGKLRRLLEA 190 (504)
T ss_pred HHHHHHHHHH
Confidence 9999988873
No 320
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.79 E-value=1.1e-07 Score=114.86 Aligned_cols=52 Identities=31% Similarity=0.471 Sum_probs=44.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA 440 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~ 440 (976)
|..-|++++|+++++..+..++.. +.+++|+||||||||++++++++.+...
T Consensus 13 ~~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 13 PERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred chhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 557788999999999988887653 2489999999999999999999998754
No 321
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.79 E-value=3.3e-09 Score=121.22 Aligned_cols=142 Identities=18% Similarity=0.219 Sum_probs=97.6
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCccccc--------CCCCCChHHHHHH---HHHHHHhcCCceEecc
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLS--------DPSAKTPEEALVH---IFGEARRTTPSILYIP 771 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~--------~~~~g~~e~~~~~---~f~~a~~~~p~ilfiD 771 (976)
.|||.|++||||.++|++|..... +-||+.|+|+.+-. ++--|.+..+... .|+.| ..+.||||
T Consensus 166 ~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~fE~A---~GGTLfLD 242 (464)
T COG2204 166 SVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRFEQA---NGGTLFLD 242 (464)
T ss_pred CEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcccccCcceeEc---CCceEEee
Confidence 499999999999999999998743 25999999964321 1112222222222 44444 45689999
Q ss_pred ccchhHHHHHHHHHHHHH-HHHhhCCC----CCCEEEEEecCCCcccCcCCCCCCcCCc-----cEEEecCCCHHHHHHH
Q 002045 772 QFNLWWENAHEQLRAVLL-TLLEELPS----HLPILLLGSSSVPLAEVEGDPSTVFPLR-----SVYQVEKPSTEDRSLF 841 (976)
Q Consensus 772 Eid~l~~~~~~~~~~~l~-~ll~~~~~----~~~v~vi~ttn~~~~~Ld~~~~~~~~~r-----~~i~v~~P~~~er~~i 841 (976)
||..+.-..+..++++|. ..+..+.+ .-+|-||+|||+....+-. .++|+.. +|+.+..|...||.+-
T Consensus 243 EI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~--~G~FReDLyyRLnV~~i~iPpLRER~ED 320 (464)
T COG2204 243 EIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVA--AGRFREDLYYRLNVVPLRLPPLRERKED 320 (464)
T ss_pred ccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHH--cCCcHHHHHhhhccceecCCcccccchh
Confidence 999999888888766663 22223322 3478899999988444444 7777754 8999999999999875
Q ss_pred HHHHHHHHHh
Q 002045 842 LGRLIEAAVS 851 (976)
Q Consensus 842 ~~~~l~~~~~ 851 (976)
+-.++..++.
T Consensus 321 Ip~L~~hfl~ 330 (464)
T COG2204 321 IPLLAEHFLK 330 (464)
T ss_pred HHHHHHHHHH
Confidence 5555554444
No 322
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.79 E-value=5.1e-08 Score=104.11 Aligned_cols=125 Identities=18% Similarity=0.174 Sum_probs=77.0
Q ss_pred CceeeccCCCCcHhhHHHHHHHhh--cCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHEL--EKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAH 781 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l--~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~~ 781 (976)
..++|+|++|||||+||+++++.+ .+.+++.+++..+.. .+. ....+.+|+|||++.+.....
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~-------------~~~--~~~~~~~liiDdi~~l~~~~~ 107 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL-------------AFD--FDPEAELYAVDDVERLDDAQQ 107 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH-------------HHh--hcccCCEEEEeChhhcCchHH
Confidence 469999999999999999999975 345666666544321 111 122457999999998754333
Q ss_pred HHHHHHHHHHHhhCCCCCCEEEEEecCCCcccC--cCCCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 782 EQLRAVLLTLLEELPSHLPILLLGSSSVPLAEV--EGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 782 ~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~L--d~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
.. |..++..+......+||.|++.++... .+.+..++....++.+++|+.+++..+++.++.
T Consensus 108 ~~----L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~ 171 (227)
T PRK08903 108 IA----LFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAA 171 (227)
T ss_pred HH----HHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHH
Confidence 33 444454443333433444444442222 122223444347888999999888888876654
No 323
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.78 E-value=2.2e-08 Score=113.52 Aligned_cols=135 Identities=16% Similarity=0.219 Sum_probs=83.1
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCC----CeeecCCcccccCCC------------CCC-------hHHHHHHHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKF----PVHSLGLPALLSDPS------------AKT-------PEEALVHIFGEA 760 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~----~~~~~~~~~l~~~~~------------~g~-------~e~~~~~~f~~a 760 (976)
+++||+||||||||++|+++++++.+. +++.+++..+..... .+. ....++.+...+
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEY 116 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHH
Confidence 469999999999999999999987432 466777655432100 000 112333443333
Q ss_pred Hh-----cCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCH
Q 002045 761 RR-----TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPST 835 (976)
Q Consensus 761 ~~-----~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~ 835 (976)
.. ..+.||||||++.+.... .+.|..+|+..... ..+|+++ +.+ ..+.+ . +.....++.|.+|+.
T Consensus 117 ~~~~~~~~~~~vlilDe~~~l~~~~----~~~L~~~le~~~~~-~~~Il~~-~~~-~~~~~--~-L~sr~~~v~~~~~~~ 186 (337)
T PRK12402 117 ASYRPLSADYKTILLDNAEALREDA----QQALRRIMEQYSRT-CRFIIAT-RQP-SKLIP--P-IRSRCLPLFFRAPTD 186 (337)
T ss_pred HhcCCCCCCCcEEEEeCcccCCHHH----HHHHHHHHHhccCC-CeEEEEe-CCh-hhCch--h-hcCCceEEEecCCCH
Confidence 33 234699999999886543 33456666655433 4455544 444 23333 2 222125788999999
Q ss_pred HHHHHHHHHHHHH
Q 002045 836 EDRSLFLGRLIEA 848 (976)
Q Consensus 836 ~er~~i~~~~l~~ 848 (976)
++...+++.++.+
T Consensus 187 ~~~~~~l~~~~~~ 199 (337)
T PRK12402 187 DELVDVLESIAEA 199 (337)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988773
No 324
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.78 E-value=3.2e-08 Score=118.62 Aligned_cols=126 Identities=17% Similarity=0.249 Sum_probs=82.7
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCC-----------------------CeeecCCcccccCCCCCChHHHHHHHHHHHH
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKF-----------------------PVHSLGLPALLSDPSAKTPEEALVHIFGEAR 761 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~-----------------------~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~ 761 (976)
.+||+||+|||||++|+++|+.+.+. .++.++.+ .+..-..++.+...+.
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaa-------s~~~vd~ir~i~~~v~ 112 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAA-------SNNGVDEIRDIRDKVK 112 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeecc-------ccCCHHHHHHHHHHHh
Confidence 48999999999999999999987431 23333321 1223456777777765
Q ss_pred h----cCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHH
Q 002045 762 R----TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTED 837 (976)
Q Consensus 762 ~----~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~e 837 (976)
. ....|+||||+|.|... ..+.|+..|+..+ ...+||++| +.+ +.|.+ ..+.+ -..+.|.+|+..+
T Consensus 113 ~~p~~~~~kViIIDE~~~Lt~~----a~naLLKtLEepp-~~~ifIlat-t~~-~ki~~--tI~SR-c~~~~f~~~~~~e 182 (559)
T PRK05563 113 YAPSEAKYKVYIIDEVHMLSTG----AFNALLKTLEEPP-AHVIFILAT-TEP-HKIPA--TILSR-CQRFDFKRISVED 182 (559)
T ss_pred hCcccCCeEEEEEECcccCCHH----HHHHHHHHhcCCC-CCeEEEEEe-CCh-hhCcH--HHHhH-heEEecCCCCHHH
Confidence 3 22459999999998643 3445555565433 344555554 555 45554 22222 2578899999999
Q ss_pred HHHHHHHHHH
Q 002045 838 RSLFLGRLIE 847 (976)
Q Consensus 838 r~~i~~~~l~ 847 (976)
...+++.++.
T Consensus 183 i~~~L~~i~~ 192 (559)
T PRK05563 183 IVERLKYILD 192 (559)
T ss_pred HHHHHHHHHH
Confidence 9999988887
No 325
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.77 E-value=3.6e-08 Score=117.57 Aligned_cols=127 Identities=16% Similarity=0.181 Sum_probs=79.5
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCC-------------------------CeeecCCcccccCCCCCChHHHHHHHHHH
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKF-------------------------PVHSLGLPALLSDPSAKTPEEALVHIFGE 759 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~-------------------------~~~~~~~~~l~~~~~~g~~e~~~~~~f~~ 759 (976)
.+||+||+|||||++|+++|+.+.+. .++.++.+.. ..-..++++...
T Consensus 37 a~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~-------~gvd~iRel~~~ 109 (584)
T PRK14952 37 AYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASH-------GGVDDTRELRDR 109 (584)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccc-------cCHHHHHHHHHH
Confidence 37999999999999999999987431 1222221110 012345555544
Q ss_pred HHh----cCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCH
Q 002045 760 ARR----TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPST 835 (976)
Q Consensus 760 a~~----~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~ 835 (976)
+.- ....|++|||+|.+... ..+.|+..|+..+. ..+||++| +.+ ..|.+ . +++.-.+|.|..++.
T Consensus 110 ~~~~P~~~~~KVvIIDEah~Lt~~----A~NALLK~LEEpp~-~~~fIL~t-te~-~kll~--T-I~SRc~~~~F~~l~~ 179 (584)
T PRK14952 110 AFYAPAQSRYRIFIVDEAHMVTTA----GFNALLKIVEEPPE-HLIFIFAT-TEP-EKVLP--T-IRSRTHHYPFRLLPP 179 (584)
T ss_pred HHhhhhcCCceEEEEECCCcCCHH----HHHHHHHHHhcCCC-CeEEEEEe-CCh-HhhHH--H-HHHhceEEEeeCCCH
Confidence 432 22359999999998754 34456666665443 34444444 545 34443 2 222136888999999
Q ss_pred HHHHHHHHHHHHH
Q 002045 836 EDRSLFLGRLIEA 848 (976)
Q Consensus 836 ~er~~i~~~~l~~ 848 (976)
++..+.++.++..
T Consensus 180 ~~i~~~L~~i~~~ 192 (584)
T PRK14952 180 RTMRALIARICEQ 192 (584)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888873
No 326
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.77 E-value=1.9e-08 Score=119.65 Aligned_cols=165 Identities=18% Similarity=0.213 Sum_probs=98.9
Q ss_pred cccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEe---cchhHHh
Q 002045 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR---KGADVLS 456 (976)
Q Consensus 380 ~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~---~~~~l~~ 456 (976)
.|.|++.+|..|.-.+.--. .+..-....+....+|||+|+||||||++|+++++.+.. ..|... ++..+..
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~-~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r----~~~~~~~~~~~~~l~~ 278 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGV-HKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPR----AVYTTGKGSSAVGLTA 278 (509)
T ss_pred cccCcHHHHHHHHHHHhCCC-ccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCc----ceEcCCCCCCcCCccc
Confidence 47899998877755542210 011111122334458999999999999999999997642 223321 1111211
Q ss_pred hhHhH---HHHHH-HHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC-----------CCCcE
Q 002045 457 KWVGE---AERQL-KLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-----------SRGQV 521 (976)
Q Consensus 457 ~~~g~---~~~~l-~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~-----------~~~~v 521 (976)
..+.. .+..+ ...+..| ...+++|||++.+. ...+..|+..|+.-. -...+
T Consensus 279 ~~~~~~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l~-----------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~ 344 (509)
T smart00350 279 AVTRDPETREFTLEGGALVLA---DNGVCCIDEFDKMD-----------DSDRTAIHEAMEQQTISIAKAGITTTLNARC 344 (509)
T ss_pred cceEccCcceEEecCccEEec---CCCEEEEechhhCC-----------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCc
Confidence 10000 00000 0011111 23499999999883 445667777775321 12467
Q ss_pred EEEecCCCcc-------------ccchhhcCCCCCccccC-CCCCCHHHHHHHHHHHH
Q 002045 522 VLIGATNRVD-------------AIDGALRRPGRFDREFN-FPLPGCEARAEILDIHT 565 (976)
Q Consensus 522 ivI~atn~~~-------------~ld~aL~r~gRf~~~i~-~~~P~~~er~~Il~~~l 565 (976)
.||+|+|+.+ .|++++++ ||+..+. +..|+.+...+|+++.+
T Consensus 345 ~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 345 SVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred EEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHH
Confidence 8999999853 48899999 9987654 47889988888888754
No 327
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=1.2e-07 Score=106.39 Aligned_cols=159 Identities=16% Similarity=0.143 Sum_probs=104.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcC-------------------CcEEEEEecchhH-HhhhHhHHHHHHHHHH
Q 002045 411 TPPRGVLLCGPPGTGKTLIARALACAASKAG-------------------QKVSFYMRKGADV-LSKWVGEAERQLKLLF 470 (976)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~-------------------~~~~~~~~~~~~l-~~~~~g~~~~~l~~~f 470 (976)
+.+..+||+||+|+||+++|.++|+.+.... .+..++.+....- ....+.+.......+.
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 4567899999999999999999999985421 1112222221100 0011233333333333
Q ss_pred HHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCC
Q 002045 471 EEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFP 550 (976)
Q Consensus 471 ~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~ 550 (976)
.....+..-|+|||++|.| .....+.||..|+. ...++++|.+|+.++.|-|.+++ |+. .+.|+
T Consensus 102 ~~~~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq-~~~~~ 165 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALL-----------TDAAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR-LHYLA 165 (334)
T ss_pred hccccCCceEEEEcchHhh-----------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc-cccCC
Confidence 3333344569999999988 45677889999994 56678888899999999999999 774 68999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 002045 551 LPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (976)
Q Consensus 551 ~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~ 590 (976)
+|+.++..+.|.... + .+......++..+.|-.+.
T Consensus 166 ~~~~~~~~~~L~~~~---~--~~~~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 166 PPPEQYALTWLSREV---T--MSQDALLAALRLSAGAPGA 200 (334)
T ss_pred CCCHHHHHHHHHHcc---C--CCHHHHHHHHHHcCCCHHH
Confidence 999988887775421 2 3344344566666664433
No 328
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=1.4e-07 Score=104.89 Aligned_cols=135 Identities=15% Similarity=0.204 Sum_probs=94.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCC-------------------cEEEEEecchhHHhhhHhHHHHHHHHHHH
Q 002045 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQ-------------------KVSFYMRKGADVLSKWVGEAERQLKLLFE 471 (976)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~-------------------~~~~~~~~~~~l~~~~~g~~~~~l~~~f~ 471 (976)
..+..+||+||+|+||+++|+++|+.+..... +..++.+...+ ++.+ .-..++.+.+
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~I--~id~iR~l~~ 97 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKDI--GVDQVREINE 97 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCCC--CHHHHHHHHH
Confidence 44568999999999999999999999865321 11122222110 0001 1234444444
Q ss_pred HHH----hcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCccccchhhcCCCCCcccc
Q 002045 472 EAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREF 547 (976)
Q Consensus 472 ~a~----~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i 547 (976)
.+. .+..-|+|||++|.| .....+.||..|+. ...++++|.+|+.++.|.|.+++ |+ ..+
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m-----------~~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC-~~~ 161 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERL-----------TEAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RC-QTW 161 (325)
T ss_pred HHhhccccCCceEEEEechhhh-----------CHHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hc-eEE
Confidence 333 333459999999988 45677889999994 56678888889989999999998 76 678
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 002045 548 NFPLPGCEARAEILDIHT 565 (976)
Q Consensus 548 ~~~~P~~~er~~Il~~~l 565 (976)
.|++|+.++..+.|....
T Consensus 162 ~~~~~~~~~~~~~L~~~~ 179 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQS 179 (325)
T ss_pred eCCCCCHHHHHHHHHHHh
Confidence 999999999888887643
No 329
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.75 E-value=2.6e-08 Score=100.28 Aligned_cols=138 Identities=25% Similarity=0.310 Sum_probs=89.1
Q ss_pred ChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC------------------cE
Q 002045 383 GLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ------------------KV 444 (976)
Q Consensus 383 G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~------------------~~ 444 (976)
|++++++.|...+.. -..+..+||+||+|+||+++|.++|+.+..... ..
T Consensus 1 gq~~~~~~L~~~~~~------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHC------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHc------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 788888899888765 145667999999999999999999999854321 11
Q ss_pred EEEEecchhHHhhhHhHHHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCc
Q 002045 445 SFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQ 520 (976)
Q Consensus 445 ~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~----~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~ 520 (976)
.++.+....... .+ ....++.+...+. .+..-|++||++|.| .....+.||..|+. ...+
T Consensus 69 d~~~~~~~~~~~-~i--~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-----------~~~a~NaLLK~LEe--pp~~ 132 (162)
T PF13177_consen 69 DFIIIKPDKKKK-SI--KIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-----------TEEAQNALLKTLEE--PPEN 132 (162)
T ss_dssp TEEEEETTTSSS-SB--SHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHHS--TTTT
T ss_pred ceEEEecccccc-hh--hHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-----------hHHHHHHHHHHhcC--CCCC
Confidence 222332221100 00 1233444444432 233559999999988 57788999999994 4567
Q ss_pred EEEEecCCCccccchhhcCCCCCccccCCCC
Q 002045 521 VVLIGATNRVDAIDGALRRPGRFDREFNFPL 551 (976)
Q Consensus 521 vivI~atn~~~~ld~aL~r~gRf~~~i~~~~ 551 (976)
+++|.+|+.+..|-+.+++ |+ ..|.|++
T Consensus 133 ~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~ 160 (162)
T PF13177_consen 133 TYFILITNNPSKILPTIRS--RC-QVIRFRP 160 (162)
T ss_dssp EEEEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred EEEEEEECChHHChHHHHh--hc-eEEecCC
Confidence 8888889999999999999 76 4455544
No 330
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.75 E-value=2.6e-08 Score=97.40 Aligned_cols=106 Identities=27% Similarity=0.337 Sum_probs=65.6
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcccccCCCCCChHHH---HHHHHHHHHhcCCceEeccccchhHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPSAKTPEEA---LVHIFGEARRTTPSILYIPQFNLWWE 778 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~~~~~g~~e~~---~~~~f~~a~~~~p~ilfiDEid~l~~ 778 (976)
.+++|+||||||||++++.++..+. +.+++.+++........ ...... ....+..+....+++|+|||++.+..
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~ 98 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLV-VAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR 98 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhH-HHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH
Confidence 4699999999999999999999862 35777777665543321 100000 11223344456689999999999844
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCEEEEEecCCC
Q 002045 779 NAHEQLRAVLLTLLEELPSHLPILLLGSSSVP 810 (976)
Q Consensus 779 ~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~ 810 (976)
.....+...+..+........++.||+++|..
T Consensus 99 ~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 99 GAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred HHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 33333333333332221123578888888877
No 331
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.75 E-value=1.9e-08 Score=117.03 Aligned_cols=133 Identities=17% Similarity=0.206 Sum_probs=91.4
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHH--H--hcCCceEeccccchhHHHH
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEA--R--RTTPSILYIPQFNLWWENA 780 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a--~--~~~p~ilfiDEid~l~~~~ 780 (976)
-+|||||||-||||||+.||+.. |+.++.++.++-.+.. ...+.|..+.+.- - ...|.+|+|||||.-.
T Consensus 328 ilLL~GppGlGKTTLAHViAkqa-GYsVvEINASDeRt~~---~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~--- 400 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQA-GYSVVEINASDERTAP---MVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP--- 400 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHhc-CceEEEecccccccHH---HHHHHHHHHHhhccccccCCCcceEEEecccCCc---
Confidence 48899999999999999999997 9999999987765421 2223333332221 1 2569999999999755
Q ss_pred HHHHHHHHHHHHhh----CCC--C-------------CCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHH
Q 002045 781 HEQLRAVLLTLLEE----LPS--H-------------LPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLF 841 (976)
Q Consensus 781 ~~~~~~~l~~ll~~----~~~--~-------------~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i 841 (976)
..++.+|+.++.. ..+ . -.--|||.+|.. .-|.+..++++..++.|.+|...-..+=
T Consensus 401 -~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL---YaPaLR~Lr~~A~ii~f~~p~~s~Lv~R 476 (877)
T KOG1969|consen 401 -RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL---YAPALRPLRPFAEIIAFVPPSQSRLVER 476 (877)
T ss_pred -HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc---cchhhhhcccceEEEEecCCChhHHHHH
Confidence 3345555555541 100 1 012356667744 4455677777779999999999988888
Q ss_pred HHHHHHH
Q 002045 842 LGRLIEA 848 (976)
Q Consensus 842 ~~~~l~~ 848 (976)
|+.+|.+
T Consensus 477 L~~IC~r 483 (877)
T KOG1969|consen 477 LNEICHR 483 (877)
T ss_pred HHHHHhh
Confidence 9888874
No 332
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.75 E-value=8.1e-09 Score=109.44 Aligned_cols=135 Identities=15% Similarity=0.136 Sum_probs=77.4
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCC-----CeeecCCcccccCCCCCChHHHHHHHHHHHH--h----cCCceEeccc
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKF-----PVHSLGLPALLSDPSAKTPEEALVHIFGEAR--R----TTPSILYIPQ 772 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~-----~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~--~----~~p~ilfiDE 772 (976)
|++|||||||||||..|+++|.++.+- .+..++.+...+.-.+++.-++..++...-. . ..+-|++|||
T Consensus 58 p~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDE 137 (346)
T KOG0989|consen 58 PHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDE 137 (346)
T ss_pred ceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEec
Confidence 579999999999999999999998652 2333444333322112221112222211110 0 1125999999
Q ss_pred cchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHHH
Q 002045 773 FNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (976)
Q Consensus 773 id~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~~ 848 (976)
+|.+....+..+.++ |+.. +..-+| |.-||.. +.|+.-+.++ -..|.|.+...+.....|+.+...
T Consensus 138 cdsmtsdaq~aLrr~----mE~~-s~~trF-iLIcnyl-srii~pi~SR---C~KfrFk~L~d~~iv~rL~~Ia~~ 203 (346)
T KOG0989|consen 138 CDSMTSDAQAALRRT----MEDF-SRTTRF-ILICNYL-SRIIRPLVSR---CQKFRFKKLKDEDIVDRLEKIASK 203 (346)
T ss_pred hhhhhHHHHHHHHHH----Hhcc-ccceEE-EEEcCCh-hhCChHHHhh---HHHhcCCCcchHHHHHHHHHHHHH
Confidence 999988777654444 4442 233344 4455666 3444311111 135558877777888888877763
No 333
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=1.1e-08 Score=120.73 Aligned_cols=127 Identities=14% Similarity=0.182 Sum_probs=82.0
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCC-----------------------eeecCCcccccCCCCCChHHHHHHHHHHHH
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFP-----------------------VHSLGLPALLSDPSAKTPEEALVHIFGEAR 761 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~-----------------------~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~ 761 (976)
.+||+||+|||||++|+++|+.+.+.. ++.++.+. ...-..++.+...+.
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas-------~~~v~~iR~l~~~~~ 112 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAAS-------RTKVEDTRELLDNIP 112 (509)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccc-------cCCHHHHHHHHHHHh
Confidence 479999999999999999999875421 33333221 122345666666543
Q ss_pred h----cCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHH
Q 002045 762 R----TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTED 837 (976)
Q Consensus 762 ~----~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~e 837 (976)
- ....|+||||+|.+.... .+.|+..|+..+. ..+||++| +.+ ..+.+ . +.+.-.+++|..++..+
T Consensus 113 ~~p~~~~~kV~iIDE~~~ls~~a----~naLLk~LEepp~-~~~fIlat-td~-~kl~~--t-I~SRc~~~~f~~l~~~~ 182 (509)
T PRK14958 113 YAPTKGRFKVYLIDEVHMLSGHS----FNALLKTLEEPPS-HVKFILAT-TDH-HKLPV--T-VLSRCLQFHLAQLPPLQ 182 (509)
T ss_pred hccccCCcEEEEEEChHhcCHHH----HHHHHHHHhccCC-CeEEEEEE-CCh-HhchH--H-HHHHhhhhhcCCCCHHH
Confidence 2 223599999999987543 3456666666543 34455555 445 34544 3 23312677899899999
Q ss_pred HHHHHHHHHHH
Q 002045 838 RSLFLGRLIEA 848 (976)
Q Consensus 838 r~~i~~~~l~~ 848 (976)
....++.++..
T Consensus 183 i~~~l~~il~~ 193 (509)
T PRK14958 183 IAAHCQHLLKE 193 (509)
T ss_pred HHHHHHHHHHH
Confidence 88888888873
No 334
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=1.4e-08 Score=118.18 Aligned_cols=145 Identities=15% Similarity=0.164 Sum_probs=91.3
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcC-----------------------CCeeecCCcccccCCCCCChHHHHHHHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEK-----------------------FPVHSLGLPALLSDPSAKTPEEALVHIFGEA 760 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~-----------------------~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a 760 (976)
..+||+||+|||||++|+++|+.+.. ..++.++.++ ...-..++.+...+
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas-------~~~vddIR~Iie~~ 108 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAAS-------NTSVDDIKVILENS 108 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEeccc-------CCCHHHHHHHHHHH
Confidence 46999999999999999999997532 2234444321 11234577777776
Q ss_pred Hhc----CCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHH
Q 002045 761 RRT----TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTE 836 (976)
Q Consensus 761 ~~~----~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~ 836 (976)
... ...|++|||+|.+... ..+.|+..|+..+. ..+||++| +.+ ..|.. . +.+.-.++.|.+++.+
T Consensus 109 ~~~P~~~~~KVvIIDEah~Ls~~----A~NaLLK~LEePp~-~v~fIlat-te~-~Kl~~--t-I~SRc~~~~f~~l~~~ 178 (491)
T PRK14964 109 CYLPISSKFKVYIIDEVHMLSNS----AFNALLKTLEEPAP-HVKFILAT-TEV-KKIPV--T-IISRCQRFDLQKIPTD 178 (491)
T ss_pred HhccccCCceEEEEeChHhCCHH----HHHHHHHHHhCCCC-CeEEEEEe-CCh-HHHHH--H-HHHhheeeecccccHH
Confidence 533 2459999999988653 34456666665443 34444444 444 34544 2 2221267889999999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCC
Q 002045 837 DRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVP 874 (976)
Q Consensus 837 er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~ 874 (976)
+....++.++.+ .+...++..+..|+...
T Consensus 179 el~~~L~~ia~~---------Egi~i~~eAL~lIa~~s 207 (491)
T PRK14964 179 KLVEHLVDIAKK---------ENIEHDEESLKLIAENS 207 (491)
T ss_pred HHHHHHHHHHHH---------cCCCCCHHHHHHHHHHc
Confidence 999999988873 22333344455555555
No 335
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.74 E-value=2.1e-08 Score=123.31 Aligned_cols=197 Identities=20% Similarity=0.268 Sum_probs=120.6
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhH
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l 454 (976)
..+|++|+|.+.....+.+.+... ......|||+|++||||+++|++|.+..... ..+|+.++|..+
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~--~~pfv~vnc~~~ 387 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQA-----------AKSSFPVLLCGEEGVGKALLAQAIHNESERA--AGPYIAVNCQLY 387 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCcc--CCCeEEEECCCC
Confidence 457889999998887777665431 1345579999999999999999999876432 358899998765
Q ss_pred Hh-----hhHhHH----HHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCC---C----
Q 002045 455 LS-----KWVGEA----ERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS---R---- 518 (976)
Q Consensus 455 ~~-----~~~g~~----~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~---~---- 518 (976)
.. .++|.. .......|..+ ...+||||||+.|. ..++..|+..++.-.- .
T Consensus 388 ~~~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~-----------~~~Q~~Ll~~l~~~~~~~~~~~~~ 453 (638)
T PRK11388 388 PDEALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLS-----------PELQSALLQVLKTGVITRLDSRRL 453 (638)
T ss_pred ChHHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCC-----------HHHHHHHHHHHhcCcEEeCCCCce
Confidence 32 222211 00000112222 24599999999883 4566777777753210 0
Q ss_pred --CcEEEEecCCCccccchhhcCCCCCc-------cccCCCCCCHHHH----HHHHHHHHhcC------CCCCCHHHHHH
Q 002045 519 --GQVVLIGATNRVDAIDGALRRPGRFD-------REFNFPLPGCEAR----AEILDIHTRKW------KQPPSRELKSE 579 (976)
Q Consensus 519 --~~vivI~atn~~~~ld~aL~r~gRf~-------~~i~~~~P~~~er----~~Il~~~l~~~------~~~~~~~~l~~ 579 (976)
-++.||++|+.. +. .+...|+|. ..+.+..|...+| ..++..++..+ .+.++.+.+..
T Consensus 454 ~~~~~riI~~t~~~--l~-~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~ 530 (638)
T PRK11388 454 IPVDVRVIATTTAD--LA-MLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALAR 530 (638)
T ss_pred EEeeEEEEEeccCC--HH-HHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHH
Confidence 146788888763 11 122223342 1334455555555 34444444332 24567888888
Q ss_pred HHHHccCCCHHHHHHHHHHHHH
Q 002045 580 LAASCVGYCGADLKALCTEAAI 601 (976)
Q Consensus 580 lA~~t~G~s~~dI~~l~~~A~~ 601 (976)
|..+.=--+-++|++++..++.
T Consensus 531 L~~y~WPGNvreL~~~l~~~~~ 552 (638)
T PRK11388 531 LVSYRWPGNDFELRSVIENLAL 552 (638)
T ss_pred HHcCCCCChHHHHHHHHHHHHH
Confidence 8777644567899999887764
No 336
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.74 E-value=5e-07 Score=97.72 Aligned_cols=185 Identities=20% Similarity=0.256 Sum_probs=109.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhc----CCcEEEEEecch------hHHhhhH---h-------HHHHHHHHHHHH
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAASKA----GQKVSFYMRKGA------DVLSKWV---G-------EAERQLKLLFEE 472 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~----~~~~~~~~~~~~------~l~~~~~---g-------~~~~~l~~~f~~ 472 (976)
..++||+|++|.|||++++..+...... ...++++.+... .|..... | ........++..
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~l 140 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRL 140 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHH
Confidence 3579999999999999999998764321 123455544432 1221111 0 111222334455
Q ss_pred HHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCC--cc--ccchhhcCCCCCccccC
Q 002045 473 AQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR--VD--AIDGALRRPGRFDREFN 548 (976)
Q Consensus 473 a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~--~~--~ld~aL~r~gRf~~~i~ 548 (976)
.+..++-+|+|||+|.++.... .-+..+++.+..+.+.-++.||+.... .. .-|+.|.+ ||. .+.
T Consensus 141 lr~~~vrmLIIDE~H~lLaGs~--------~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~ 209 (302)
T PF05621_consen 141 LRRLGVRMLIIDEFHNLLAGSY--------RKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS--RFE-PFE 209 (302)
T ss_pred HHHcCCcEEEeechHHHhcccH--------HHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh--ccC-Ccc
Confidence 5666777999999999763211 112334444443333334444444322 11 24677777 884 566
Q ss_pred CCCCCH-HHHHHHHHHHHhcCCCC-----CCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCC
Q 002045 549 FPLPGC-EARAEILDIHTRKWKQP-----PSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (976)
Q Consensus 549 ~~~P~~-~er~~Il~~~l~~~~~~-----~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~ 609 (976)
+|.... ++...++..+-..+++. .+.++...|-..+.|.. +++..+++.|+..|++...+
T Consensus 210 Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i-G~l~~ll~~aA~~AI~sG~E 275 (302)
T PF05621_consen 210 LPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI-GELSRLLNAAAIAAIRSGEE 275 (302)
T ss_pred CCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch-HHHHHHHHHHHHHHHhcCCc
Confidence 676543 56666776666555432 23455578888888866 57889999999999987654
No 337
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.73 E-value=4.9e-08 Score=116.52 Aligned_cols=198 Identities=21% Similarity=0.241 Sum_probs=117.7
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
...+|++|+|.......+.+.+.. +. .....|||+|++||||+++|+++...... ...+|+.++|+.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~-------~A----~~~~pvlI~GE~GtGK~~lA~aiH~~s~r--~~~pfv~inca~ 265 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARK-------LA----MLDAPLLITGDTGTGKDLLAYACHLRSPR--GKKPFLALNCAS 265 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHH-------Hh----CCCCCEEEECCCCccHHHHHHHHHHhCCC--CCCCeEEecccc
Confidence 467899999999877777665532 11 23456999999999999999998765432 236788999976
Q ss_pred HHhhh-----HhHHH-------HHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC--C--
Q 002045 454 VLSKW-----VGEAE-------RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD--S-- 517 (976)
Q Consensus 454 l~~~~-----~g~~~-------~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~--~-- 517 (976)
+.... +|... .....+|+.+. ...||||||+.|. ..++..|+..++.-. .
T Consensus 266 ~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~-----------~~~Q~~Ll~~l~~~~~~~~g 331 (520)
T PRK10820 266 IPDDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMS-----------PRMQAKLLRFLNDGTFRRVG 331 (520)
T ss_pred CCHHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCC-----------HHHHHHHHHHHhcCCcccCC
Confidence 54321 12110 00112344333 3489999999884 456667777775321 1
Q ss_pred -----CCcEEEEecCCCc-cc------cchhhcCCCCCccccCCCCCCHHHHH----HHHHHHHh----cCC---CCCCH
Q 002045 518 -----RGQVVLIGATNRV-DA------IDGALRRPGRFDREFNFPLPGCEARA----EILDIHTR----KWK---QPPSR 574 (976)
Q Consensus 518 -----~~~vivI~atn~~-~~------ld~aL~r~gRf~~~i~~~~P~~~er~----~Il~~~l~----~~~---~~~~~ 574 (976)
..++.||++|+.. .. +.+.|.. |+. .+.+..|...+|. .++..++. ..+ ..++.
T Consensus 332 ~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~ 408 (520)
T PRK10820 332 EDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAA 408 (520)
T ss_pred CCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCH
Confidence 1246677777652 11 2233333 432 2444455544444 33333333 332 35677
Q ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHH
Q 002045 575 ELKSELAASCVGYCGADLKALCTEAAI 601 (976)
Q Consensus 575 ~~l~~lA~~t~G~s~~dI~~l~~~A~~ 601 (976)
+++..|..+.=--+-++|++++..|+.
T Consensus 409 ~a~~~L~~y~WPGNvreL~nvl~~a~~ 435 (520)
T PRK10820 409 DLNTVLTRYGWPGNVRQLKNAIYRALT 435 (520)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 777777665433466788888877764
No 338
>PRK06620 hypothetical protein; Validated
Probab=98.73 E-value=2.3e-08 Score=105.32 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=73.5
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHEQ 783 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~~~~ 783 (976)
+.++|+||||||||||++++++.. +..+ +. ... . ....+ + ...+|+|||||.+.. ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~-~~~~--~~--~~~------~----~~~~~----~-~~d~lliDdi~~~~~---~~ 101 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS-NAYI--IK--DIF------F----NEEIL----E-KYNAFIIEDIENWQE---PA 101 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc-CCEE--cc--hhh------h----chhHH----h-cCCEEEEeccccchH---HH
Confidence 469999999999999999999875 3222 11 000 0 01111 1 237899999996521 23
Q ss_pred HHHHHHHHHhhCCCCCCEEEEEecCCCcccCc-CCCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 784 LRAVLLTLLEELPSHLPILLLGSSSVPLAEVE-GDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 784 ~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld-~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
+...++.+. .....+||+++..| ..+. +.+.+++....++.+.+|+.+++..+++.++.
T Consensus 102 lf~l~N~~~----e~g~~ilits~~~p-~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 102 LLHIFNIIN----EKQKYLLLTSSDKS-RNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred HHHHHHHHH----hcCCEEEEEcCCCc-cccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 333333333 33456667666656 3332 33455555457999999999999999988876
No 339
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=2e-07 Score=103.42 Aligned_cols=159 Identities=19% Similarity=0.249 Sum_probs=101.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCC----------------cEEEEEe--cchhHHhh-hHhHHHHHHHHHHH
Q 002045 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQ----------------KVSFYMR--KGADVLSK-WVGEAERQLKLLFE 471 (976)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~----------------~~~~~~~--~~~~l~~~-~~g~~~~~l~~~f~ 471 (976)
+-+..+||+||+|+||+++|.++|+.+..... +..++.+ ....--.+ ...-.-..++.+.+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 44567999999999999999999998864321 1112222 11000000 00011234455554
Q ss_pred HHHh----cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCccccchhhcCCCCCcccc
Q 002045 472 EAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREF 547 (976)
Q Consensus 472 ~a~~----~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i 547 (976)
.+.. +..-|+|||++|.| .....+.||..|+. ...++++|.+|+.++.|-|.+++ |+ ..|
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--RC-q~i 167 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAI-----------NRAACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--RC-QRL 167 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhh-----------CHHHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--hh-eEe
Confidence 4432 23359999999988 45677889999995 44567777788888999999999 77 678
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHH
Q 002045 548 NFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGAD 591 (976)
Q Consensus 548 ~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~d 591 (976)
.|+.|+.++..+.|... + .+......++..+.|-.+..
T Consensus 168 ~~~~~~~~~~~~~L~~~----~--~~~~~a~~~~~l~~G~p~~A 205 (319)
T PRK08769 168 EFKLPPAHEALAWLLAQ----G--VSERAAQEALDAARGHPGLA 205 (319)
T ss_pred eCCCcCHHHHHHHHHHc----C--CChHHHHHHHHHcCCCHHHH
Confidence 89999998888777542 2 23333345566666644433
No 340
>PRK08116 hypothetical protein; Validated
Probab=98.72 E-value=9.5e-08 Score=104.18 Aligned_cols=132 Identities=18% Similarity=0.233 Sum_probs=76.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhHhHH----HHHHHHHHHHHHhcCCcEEEEccccc
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEA----ERQLKLLFEEAQRNQPSIIFFDEIDG 488 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~g~~----~~~l~~~f~~a~~~~p~VL~iDEid~ 488 (976)
+.+++|+|++|||||+||.++|+.+...+ .+++.++..+++..+.... ......+++... ...+|+|||+..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~--~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~ 189 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKG--VPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGA 189 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccC
Confidence 45799999999999999999999997665 3455666777665433221 111222333322 345999999954
Q ss_pred cCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCC-ccc----cchhhcCCCCC---ccccCCCCCCHHHHHHH
Q 002045 489 LAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR-VDA----IDGALRRPGRF---DREFNFPLPGCEARAEI 560 (976)
Q Consensus 489 L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~-~~~----ld~aL~r~gRf---~~~i~~~~P~~~er~~I 560 (976)
... ....+..|+.+++.....+.. +|.|||. +.. ++..+.+ |+ ...|.+.-++. |..+
T Consensus 190 e~~---------t~~~~~~l~~iin~r~~~~~~-~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~--R~~~ 255 (268)
T PRK08116 190 ERD---------TEWAREKVYNIIDSRYRKGLP-TIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY--RKEI 255 (268)
T ss_pred CCC---------CHHHHHHHHHHHHHHHHCCCC-EEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh--hHHH
Confidence 311 233445666666654434443 4445555 443 3445555 53 23355555543 4444
Q ss_pred HH
Q 002045 561 LD 562 (976)
Q Consensus 561 l~ 562 (976)
.+
T Consensus 256 ~~ 257 (268)
T PRK08116 256 AK 257 (268)
T ss_pred HH
Confidence 43
No 341
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.72 E-value=2.6e-08 Score=109.49 Aligned_cols=135 Identities=16% Similarity=0.124 Sum_probs=86.8
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCC-CCCChH----------HHHHHHHHHHHhcCCceEeccc
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDP-SAKTPE----------EALVHIFGEARRTTPSILYIPQ 772 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~-~~g~~e----------~~~~~~f~~a~~~~p~ilfiDE 772 (976)
.++||.|+||||||++|+.+|+.+ +.+++.+++...+... ++|... .-....+..|.. .+++|||||
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l-~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARL-NWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHH-CCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 579999999999999999999999 7899998876544320 123211 011124445554 368899999
Q ss_pred cchhHHHHHHHHHHHHHHHHhh-----CC-------CCCCEEEEEecCCCcccCcC---------CC-CCCcCCccEEEe
Q 002045 773 FNLWWENAHEQLRAVLLTLLEE-----LP-------SHLPILLLGSSSVPLAEVEG---------DP-STVFPLRSVYQV 830 (976)
Q Consensus 773 id~l~~~~~~~~~~~l~~ll~~-----~~-------~~~~v~vi~ttn~~~~~Ld~---------~~-~~~~~~r~~i~v 830 (976)
|+..-+... ..|+.+|+. +. ......||||.|.. ..-+. .. +.+=|+..++.+
T Consensus 143 in~a~p~~~----~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~-g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~ 217 (327)
T TIGR01650 143 YDAGRPDVM----FVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTI-GLGDTTGLYHGTQQINQAQMDRWSIVTTL 217 (327)
T ss_pred hhccCHHHH----HHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCC-CcCCCCcceeeeecCCHHHHhheeeEeeC
Confidence 999765544 445555542 11 23467899999965 32222 01 222222245678
Q ss_pred cCCCHHHHHHHHHHH
Q 002045 831 EKPSTEDRSLFLGRL 845 (976)
Q Consensus 831 ~~P~~~er~~i~~~~ 845 (976)
..|+.++-.+|+...
T Consensus 218 ~Yp~~e~E~~Il~~~ 232 (327)
T TIGR01650 218 NYLEHDNEAAIVLAK 232 (327)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999888643
No 342
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.72 E-value=7.3e-08 Score=115.04 Aligned_cols=198 Identities=24% Similarity=0.247 Sum_probs=123.6
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHh
Q 002045 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS 456 (976)
Q Consensus 377 ~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~ 456 (976)
.+.+|+|.....+.+.+.+... ...+.+|||+|++||||+++|++|....... ..+|+.++|..+..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~-----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~--~~p~v~v~c~~~~~ 251 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV-----------AASDLNVLILGETGVGKELVARAIHAASPRA--DKPLVYLNCAALPE 251 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcC--CCCeEEEEcccCCh
Confidence 5678999999988888876541 2446789999999999999999999876533 35788889876543
Q ss_pred h-----hHhHHHHH-------HHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC--------
Q 002045 457 K-----WVGEAERQ-------LKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-------- 516 (976)
Q Consensus 457 ~-----~~g~~~~~-------l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~-------- 516 (976)
. .+|..... ....|..+. ..+||||||+.|. ..++..|+..++.-.
T Consensus 252 ~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~ 317 (509)
T PRK05022 252 SLAESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELP-----------LALQAKLLRVLQYGEIQRVGSDR 317 (509)
T ss_pred HHHHHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhCC-----------HHHHHHHHHHHhcCCEeeCCCCc
Confidence 2 12211000 011233332 3489999999884 456677777775321
Q ss_pred -CCCcEEEEecCCCcc-------ccchhhcCCCCCccccCCCCCCHHHHH----HHHHHHHhc-------CCCCCCHHHH
Q 002045 517 -SRGQVVLIGATNRVD-------AIDGALRRPGRFDREFNFPLPGCEARA----EILDIHTRK-------WKQPPSRELK 577 (976)
Q Consensus 517 -~~~~vivI~atn~~~-------~ld~aL~r~gRf~~~i~~~~P~~~er~----~Il~~~l~~-------~~~~~~~~~l 577 (976)
...++-||++|+..- .+...|.. |+. .+.+..|...+|. .++.+++.. ....++.+.+
T Consensus 318 ~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~ 394 (509)
T PRK05022 318 SLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQ 394 (509)
T ss_pred ceecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 112567888887631 12222222 231 3344555554443 344443332 2245778888
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHH
Q 002045 578 SELAASCVGYCGADLKALCTEAAIRAF 604 (976)
Q Consensus 578 ~~lA~~t~G~s~~dI~~l~~~A~~~a~ 604 (976)
..|..+.=--+-++|++++..|+..+.
T Consensus 395 ~~L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 395 AALLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 877776655577899999998876544
No 343
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.72 E-value=3.2e-08 Score=111.65 Aligned_cols=135 Identities=24% Similarity=0.258 Sum_probs=95.0
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcC----CCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH-
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEK----FPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN- 779 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~----~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~- 779 (976)
-++|+|++|+|||||++|++++... ..++.+....++..+ +-..-.+-..-|+.-. .-.+|+||+|+.+.+.
T Consensus 115 plfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~-v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~ 191 (408)
T COG0593 115 PLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDF-VKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKE 191 (408)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHH-HHHHHhhhHHHHHHhh--ccCeeeechHhHhcCCh
Confidence 3999999999999999999997422 224555544433222 1110111112344444 3469999999998864
Q ss_pred -HHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcC---CCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 780 -AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEG---DPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 780 -~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~---~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
.++.+..+|+.+.+.- . -||.|+.++|..|.. .+.++|.+..++.+.+|+.+.|..|++....
T Consensus 192 ~~qeefFh~FN~l~~~~----k-qIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 192 RTQEEFFHTFNALLENG----K-QIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred hHHHHHHHHHHHHHhcC----C-EEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 5788888888888532 2 456677887787774 7788888889999999999999999998655
No 344
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.71 E-value=1.3e-07 Score=112.88 Aligned_cols=134 Identities=16% Similarity=0.252 Sum_probs=80.9
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeec------------CCc---cccc-CCCCCChHHHHHHHHHHHHh----c
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSL------------GLP---ALLS-DPSAKTPEEALVHIFGEARR----T 763 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~------------~~~---~l~~-~~~~g~~e~~~~~~f~~a~~----~ 763 (976)
..+||+||+|||||++|+++|+.+.+-..... ... +++. ....+..-..++.++..+.. .
T Consensus 39 Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~g 118 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAG 118 (709)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhC
Confidence 35899999999999999999998743211100 000 1100 00012223467777765532 2
Q ss_pred CCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCc-cEEEecCCCHHHHHHHH
Q 002045 764 TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLR-SVYQVEKPSTEDRSLFL 842 (976)
Q Consensus 764 ~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r-~~i~v~~P~~~er~~i~ 842 (976)
...||||||+|.+... ..+.|+..|+..+. .+.||.+|+.+ ..+.. .. ++ | ..|.|..++.++...++
T Consensus 119 k~KVIIIDEad~Ls~~----A~NALLKtLEEPp~--~v~fILaTtd~-~kL~~--TI-rS-RC~~f~f~~Ls~eeI~~~L 187 (709)
T PRK08691 119 KYKVYIIDEVHMLSKS----AFNAMLKTLEEPPE--HVKFILATTDP-HKVPV--TV-LS-RCLQFVLRNMTAQQVADHL 187 (709)
T ss_pred CcEEEEEECccccCHH----HHHHHHHHHHhCCC--CcEEEEEeCCc-cccch--HH-HH-HHhhhhcCCCCHHHHHHHH
Confidence 3469999999987643 34456666665443 34444455555 34443 22 22 2 46678899999999999
Q ss_pred HHHHHH
Q 002045 843 GRLIEA 848 (976)
Q Consensus 843 ~~~l~~ 848 (976)
+.++..
T Consensus 188 ~~Il~k 193 (709)
T PRK08691 188 AHVLDS 193 (709)
T ss_pred HHHHHH
Confidence 988873
No 345
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.71 E-value=4.7e-08 Score=104.13 Aligned_cols=184 Identities=23% Similarity=0.305 Sum_probs=100.0
Q ss_pred ccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEe-cc--hhHHhh
Q 002045 381 IGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR-KG--ADVLSK 457 (976)
Q Consensus 381 i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~-~~--~~l~~~ 457 (976)
++|.+...+.|.+++.. .+...++|+||.|+|||++++.+.+.+...+..+.++.. .. ......
T Consensus 1 F~gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 67 (234)
T PF01637_consen 1 FFGREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRS 67 (234)
T ss_dssp S-S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHH
Confidence 36788888888776543 346789999999999999999999987432211111111 00 000000
Q ss_pred h-------------H-----------------hHHHHHHHHHHHHHHhcC-CcEEEEccccccC-CCCCChhhhhHHHHH
Q 002045 458 W-------------V-----------------GEAERQLKLLFEEAQRNQ-PSIIFFDEIDGLA-PVRSSKQEQIHNSIV 505 (976)
Q Consensus 458 ~-------------~-----------------g~~~~~l~~~f~~a~~~~-p~VL~iDEid~L~-~~r~~~~~~~~~~~~ 505 (976)
. . ......+..++..+.... ..||+|||++.+. ... .....+
T Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~------~~~~~~ 141 (234)
T PF01637_consen 68 FIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE------EDKDFL 141 (234)
T ss_dssp HHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT------TTHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc------chHHHH
Confidence 0 0 112334555666555433 4799999999997 221 124556
Q ss_pred HHHHHHhhccCCCCcEEEEecCCCcccc------chhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCC--CHHHH
Q 002045 506 STLLALMDGLDSRGQVVLIGATNRVDAI------DGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPP--SRELK 577 (976)
Q Consensus 506 ~~Ll~~ld~~~~~~~vivI~atn~~~~l------d~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~--~~~~l 577 (976)
..|...++......++.+|.++...... ...+. +|+.. +.+++.+.++..+++...+... ..+ ++..+
T Consensus 142 ~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~ 217 (234)
T PF01637_consen 142 KSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDI 217 (234)
T ss_dssp HHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC-------HHHH
T ss_pred HHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHH
Confidence 6666766654444555444444332221 12222 36666 9999999999999999988776 544 78888
Q ss_pred HHHHHHccCC
Q 002045 578 SELAASCVGY 587 (976)
Q Consensus 578 ~~lA~~t~G~ 587 (976)
+.+...+.|.
T Consensus 218 ~~i~~~~gG~ 227 (234)
T PF01637_consen 218 EEIYSLTGGN 227 (234)
T ss_dssp HHHHHHHTT-
T ss_pred HHHHHHhCCC
Confidence 8888888885
No 346
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.70 E-value=2.4e-07 Score=111.22 Aligned_cols=126 Identities=15% Similarity=0.225 Sum_probs=79.6
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCC-----------------------eeecCCcccccCCCCCChHHHHHHHHHHHH
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFP-----------------------VHSLGLPALLSDPSAKTPEEALVHIFGEAR 761 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~-----------------------~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~ 761 (976)
.+||+||+|||||++|+++|+.+.+.. ++.++... ...-..++++...+.
T Consensus 40 AyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas-------~~~VddiR~li~~~~ 112 (647)
T PRK07994 40 AYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAAS-------RTKVEDTRELLDNVQ 112 (647)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccc-------cCCHHHHHHHHHHHH
Confidence 379999999999999999999874421 12222110 012345666665543
Q ss_pred h----cCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHH
Q 002045 762 R----TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTED 837 (976)
Q Consensus 762 ~----~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~e 837 (976)
. ....|+||||+|.|.... .+.|+..|+.-+ ...+||++ |+.+ ..|.+ ..+.| -.+|.|..++.++
T Consensus 113 ~~p~~g~~KV~IIDEah~Ls~~a----~NALLKtLEEPp-~~v~FIL~-Tt~~-~kLl~--TI~SR-C~~~~f~~Ls~~e 182 (647)
T PRK07994 113 YAPARGRFKVYLIDEVHMLSRHS----FNALLKTLEEPP-EHVKFLLA-TTDP-QKLPV--TILSR-CLQFHLKALDVEQ 182 (647)
T ss_pred hhhhcCCCEEEEEechHhCCHHH----HHHHHHHHHcCC-CCeEEEEe-cCCc-cccch--HHHhh-heEeeCCCCCHHH
Confidence 2 234699999999987543 344555555433 33444444 4555 34544 22222 2678899999999
Q ss_pred HHHHHHHHHH
Q 002045 838 RSLFLGRLIE 847 (976)
Q Consensus 838 r~~i~~~~l~ 847 (976)
....++.++.
T Consensus 183 i~~~L~~il~ 192 (647)
T PRK07994 183 IRQQLEHILQ 192 (647)
T ss_pred HHHHHHHHHH
Confidence 9999998886
No 347
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.70 E-value=4.1e-07 Score=95.69 Aligned_cols=115 Identities=21% Similarity=0.127 Sum_probs=82.1
Q ss_pred CcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCC------------ccccchhhcCCCCCcc
Q 002045 478 PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR------------VDAIDGALRRPGRFDR 545 (976)
Q Consensus 478 p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~------------~~~ld~aL~r~gRf~~ 545 (976)
|.||||||+|.| .-.-.+.|-..++.- - .-+||++||+ |..|+-.|+. |. .
T Consensus 289 pGVLFIDEvHML-----------DIEcFsFlNrAlE~d--~-~PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R~-l 351 (454)
T KOG2680|consen 289 PGVLFIDEVHML-----------DIECFSFLNRALEND--M-APIIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM-L 351 (454)
T ss_pred cceEEEeeehhh-----------hhHHHHHHHHHhhhc--c-CcEEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh-h
Confidence 678888888877 223333344444421 1 2245556655 3446666666 55 5
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCC
Q 002045 546 EFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (976)
Q Consensus 546 ~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~ 609 (976)
+|...+++.++..+||++.+....+..+++.++.|......-+.+-.-+|+..|.+.+.++...
T Consensus 352 II~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~ 415 (454)
T KOG2680|consen 352 IISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGK 415 (454)
T ss_pred eeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCc
Confidence 6778889999999999999999999999988888877776667777778888888888887643
No 348
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.70 E-value=1.3e-09 Score=102.56 Aligned_cols=111 Identities=32% Similarity=0.352 Sum_probs=57.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEE-EecchhHHhhhHhHHHHHHHHHHHHHHhcC---CcEEEEccccccC
Q 002045 415 GVLLCGPPGTGKTLIARALACAASKAGQKVSFY-MRKGADVLSKWVGEAERQLKLLFEEAQRNQ---PSIIFFDEIDGLA 490 (976)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~~~~~~~~~~-~~~~~~l~~~~~g~~~~~l~~~f~~a~~~~---p~VL~iDEid~L~ 490 (976)
||||.|+||+|||++|+++|+.++....++.|. .+..+++++..+-.... ..|.- ... ..||++|||...
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~--~~GPif~~ill~DEiNra- 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET---GEFEF--RPGPIFTNILLADEINRA- 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT---TEEEE--EE-TT-SSEEEEETGGGS-
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC---CeeEe--ecChhhhceeeecccccC-
Confidence 699999999999999999999987443333321 01122222211100000 00000 000 139999999766
Q ss_pred CCCCChhhhhHHHHHHHHHHHhhccC---------CCCcEEEEecCCCcc-----ccchhhcCCCCC
Q 002045 491 PVRSSKQEQIHNSIVSTLLALMDGLD---------SRGQVVLIGATNRVD-----AIDGALRRPGRF 543 (976)
Q Consensus 491 ~~r~~~~~~~~~~~~~~Ll~~ld~~~---------~~~~vivI~atn~~~-----~ld~aL~r~gRf 543 (976)
..++++.||..|.... -...++||+|.|+.+ .|+.+++. ||
T Consensus 75 ----------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 75 ----------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp -----------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred ----------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 5678889999986422 124589999999866 37788877 77
No 349
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.70 E-value=2.5e-08 Score=117.06 Aligned_cols=135 Identities=19% Similarity=0.261 Sum_probs=83.4
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeec-----------CC--------ccccc-CCCCCChHHHHHHHHHHHHhc
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSL-----------GL--------PALLS-DPSAKTPEEALVHIFGEARRT 763 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~-----------~~--------~~l~~-~~~~g~~e~~~~~~f~~a~~~ 763 (976)
..+||+||||||||++|+++|+.+.......- .| ++++- +-........++.+++.+...
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~ 123 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYK 123 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhc
Confidence 47999999999999999999998743211000 00 01110 000112345678888777543
Q ss_pred ----CCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHH
Q 002045 764 ----TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRS 839 (976)
Q Consensus 764 ----~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~ 839 (976)
...|++|||++.+.... .+.|+..|+..+ . .+++|.+|+.+ +.+.+ ..+-+ -.++.|..++.++..
T Consensus 124 P~~~~~KVvIIDEa~~Ls~~a----~naLLk~LEepp-~-~~vfI~aTte~-~kI~~--tI~SR-c~~~ef~~ls~~el~ 193 (507)
T PRK06645 124 PLQGKHKIFIIDEVHMLSKGA----FNALLKTLEEPP-P-HIIFIFATTEV-QKIPA--TIISR-CQRYDLRRLSFEEIF 193 (507)
T ss_pred cccCCcEEEEEEChhhcCHHH----HHHHHHHHhhcC-C-CEEEEEEeCCh-HHhhH--HHHhc-ceEEEccCCCHHHHH
Confidence 23599999999886533 334555555433 2 44444444545 34554 32222 257889999999999
Q ss_pred HHHHHHHHH
Q 002045 840 LFLGRLIEA 848 (976)
Q Consensus 840 ~i~~~~l~~ 848 (976)
.+++.++..
T Consensus 194 ~~L~~i~~~ 202 (507)
T PRK06645 194 KLLEYITKQ 202 (507)
T ss_pred HHHHHHHHH
Confidence 999999873
No 350
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.70 E-value=4e-08 Score=112.33 Aligned_cols=128 Identities=15% Similarity=0.257 Sum_probs=82.0
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCC-----------------------CeeecCCcccccCCCCCChHHHHHHHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKF-----------------------PVHSLGLPALLSDPSAKTPEEALVHIFGEA 760 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~-----------------------~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a 760 (976)
..+||+||||+|||++|+++++.+... .++.++.. ....-..++.++..+
T Consensus 37 ~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~ 109 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAA-------SNNGVDDIREILDNV 109 (355)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeecc-------ccCCHHHHHHHHHHH
Confidence 358999999999999999999986321 12222111 112334577787776
Q ss_pred Hhc----CCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHH
Q 002045 761 RRT----TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTE 836 (976)
Q Consensus 761 ~~~----~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~ 836 (976)
... ...||+|||+|.+... ..+.|+..|+..+. .++||.+|+.+ +.|.+ +.+.+ -.+++|.+|+..
T Consensus 110 ~~~p~~~~~~vviidea~~l~~~----~~~~Ll~~le~~~~--~~~lIl~~~~~-~~l~~--~l~sr-~~~~~~~~~~~~ 179 (355)
T TIGR02397 110 KYAPSSGKYKVYIIDEVHMLSKS----AFNALLKTLEEPPE--HVVFILATTEP-HKIPA--TILSR-CQRFDFKRIPLE 179 (355)
T ss_pred hcCcccCCceEEEEeChhhcCHH----HHHHHHHHHhCCcc--ceeEEEEeCCH-HHHHH--HHHhh-eeEEEcCCCCHH
Confidence 542 2359999999988643 23445566654332 45555556666 44444 22222 257889999999
Q ss_pred HHHHHHHHHHHH
Q 002045 837 DRSLFLGRLIEA 848 (976)
Q Consensus 837 er~~i~~~~l~~ 848 (976)
+...+++..+..
T Consensus 180 ~l~~~l~~~~~~ 191 (355)
T TIGR02397 180 DIVERLKKILDK 191 (355)
T ss_pred HHHHHHHHHHHH
Confidence 999999988873
No 351
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.69 E-value=2.6e-08 Score=100.72 Aligned_cols=134 Identities=27% Similarity=0.401 Sum_probs=81.3
Q ss_pred ccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhh---
Q 002045 381 IGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSK--- 457 (976)
Q Consensus 381 i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~--- 457 (976)
|+|.+.....+.+.+... ...+.+|||+|++||||+++|++|.+...+ ...+|+.++|+.+...
T Consensus 1 liG~s~~m~~~~~~~~~~-----------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r--~~~pfi~vnc~~~~~~~~e 67 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA-----------ASSDLPVLITGETGTGKELLARAIHNNSPR--KNGPFISVNCAALPEELLE 67 (168)
T ss_dssp SS--SHHHHHHHHHHHHH-----------TTSTS-EEEECSTTSSHHHHHHHHHHCSTT--TTS-EEEEETTTS-HHHHH
T ss_pred CEeCCHHHHHHHHHHHHH-----------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhc--ccCCeEEEehhhhhcchhh
Confidence 466666666666655431 144578999999999999999999985432 3478999999865432
Q ss_pred --hHhHHH-------HHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC-----C----CC
Q 002045 458 --WVGEAE-------RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-----S----RG 519 (976)
Q Consensus 458 --~~g~~~-------~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~-----~----~~ 519 (976)
.+|... .....+|..|..+ +||||||+.| ...++..|+..|+.-. . .-
T Consensus 68 ~~LFG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 133 (168)
T PF00158_consen 68 SELFGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDL-----------PPELQAKLLRVLEEGKFTRLGSDKPVPV 133 (168)
T ss_dssp HHHHEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS------------HHHHHHHHHHHHHSEEECCTSSSEEE-
T ss_pred hhhhccccccccccccccCCceeeccce---EEeecchhhh-----------HHHHHHHHHHHHhhchhccccccccccc
Confidence 222211 0112456666555 9999999998 4667788888886321 1 12
Q ss_pred cEEEEecCCCccccchhhcCCCCCc
Q 002045 520 QVVLIGATNRVDAIDGALRRPGRFD 544 (976)
Q Consensus 520 ~vivI~atn~~~~ld~aL~r~gRf~ 544 (976)
++.||++|+. .+...+. .|+|.
T Consensus 134 ~~RiI~st~~--~l~~~v~-~g~fr 155 (168)
T PF00158_consen 134 DVRIIASTSK--DLEELVE-QGRFR 155 (168)
T ss_dssp -EEEEEEESS---HHHHHH-TTSS-
T ss_pred cceEEeecCc--CHHHHHH-cCCCh
Confidence 6788888886 3333333 24563
No 352
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=2.5e-07 Score=110.09 Aligned_cols=127 Identities=14% Similarity=0.193 Sum_probs=78.3
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCC-----------------------eeecCCcccccCCCCCChHHHHHHHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFP-----------------------VHSLGLPALLSDPSAKTPEEALVHIFGEA 760 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~-----------------------~~~~~~~~l~~~~~~g~~e~~~~~~f~~a 760 (976)
+.+||+||+|||||++|+++|+.+.... ++.++... ...-..++.+...+
T Consensus 39 ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~-------~~~Id~iR~L~~~~ 111 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGAS-------NRGIDDAKRLKEAI 111 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEeccc-------ccCHHHHHHHHHHH
Confidence 5799999999999999999999874311 22222110 01122344443332
Q ss_pred H----hcCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHH
Q 002045 761 R----RTTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTE 836 (976)
Q Consensus 761 ~----~~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~ 836 (976)
. .....||||||+|.+.... .+.|+..|+... ..+++|.+|+.+ ..+.. . +.+.-.+|.|..++.+
T Consensus 112 ~~~p~~g~~kVIIIDEad~Lt~~a----~naLLk~LEEP~--~~~ifILaTt~~-~kll~--T-I~SRcq~i~F~pLs~~ 181 (624)
T PRK14959 112 GYAPMEGRYKVFIIDEAHMLTREA----FNALLKTLEEPP--ARVTFVLATTEP-HKFPV--T-IVSRCQHFTFTRLSEA 181 (624)
T ss_pred HhhhhcCCceEEEEEChHhCCHHH----HHHHHHHhhccC--CCEEEEEecCCh-hhhhH--H-HHhhhhccccCCCCHH
Confidence 2 2334699999999986433 344555665432 345555566655 34443 2 2221257889999999
Q ss_pred HHHHHHHHHHH
Q 002045 837 DRSLFLGRLIE 847 (976)
Q Consensus 837 er~~i~~~~l~ 847 (976)
+...+|+.++.
T Consensus 182 eL~~~L~~il~ 192 (624)
T PRK14959 182 GLEAHLTKVLG 192 (624)
T ss_pred HHHHHHHHHHH
Confidence 99999988776
No 353
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=6.8e-08 Score=102.63 Aligned_cols=90 Identities=21% Similarity=0.353 Sum_probs=72.4
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHH-HHHHHH----HhcCCceEeccccchhHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALV-HIFGEA----RRTTPSILYIPQFNLWWE 778 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~-~~f~~a----~~~~p~ilfiDEid~l~~ 778 (976)
.++||.||+|||||+||+.+|+.| ..||-.-++..|.-..|+|+--+++- ++++.| .++.-+|+||||||++..
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~L-nVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKIL-NVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHh-CCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhc
Confidence 469999999999999999999999 79999999988877666888666643 355443 234568999999999984
Q ss_pred H----------HHHHHHHHHHHHHhh
Q 002045 779 N----------AHEQLRAVLLTLLEE 794 (976)
Q Consensus 779 ~----------~~~~~~~~l~~ll~~ 794 (976)
. .++-+.++|+.++.+
T Consensus 177 kSeN~SITRDVSGEGVQQALLKiiEG 202 (408)
T COG1219 177 KSENPSITRDVSGEGVQQALLKIIEG 202 (408)
T ss_pred cCCCCCcccccCchHHHHHHHHHHcC
Confidence 3 456778889999975
No 354
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.68 E-value=5.3e-08 Score=111.47 Aligned_cols=196 Identities=24% Similarity=0.316 Sum_probs=124.2
Q ss_pred CCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHH
Q 002045 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVL 455 (976)
Q Consensus 376 ~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~ 455 (976)
..+.+|+|.....++|.+.+.. . .....+|||+|++||||.++|++|.....+.. .+|+.+||..+.
T Consensus 138 ~~~~~liG~S~am~~l~~~i~k----------v-A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~--~PFVavNcaAip 204 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAK----------V-APSDASVLITGESGTGKELVARAIHQASPRAK--GPFIAVNCAAIP 204 (464)
T ss_pred cccCCceecCHHHHHHHHHHHH----------H-hCCCCCEEEECCCCCcHHHHHHHHHhhCcccC--CCceeeecccCC
Confidence 3566799999999999887754 1 25567899999999999999999998775443 689999997654
Q ss_pred hh-----hHhHHH-------HHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC-----C-
Q 002045 456 SK-----WVGEAE-------RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-----S- 517 (976)
Q Consensus 456 ~~-----~~g~~~-------~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~-----~- 517 (976)
.. .+|... ..-...|+.|..+ .||||||..|. -.++..||..++.-. +
T Consensus 205 ~~l~ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~mp-----------l~~Q~kLLRvLqe~~~~rvG~~ 270 (464)
T COG2204 205 ENLLESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEMP-----------LELQVKLLRVLQEREFERVGGN 270 (464)
T ss_pred HHHHHHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccCC-----------HHHHHHHHHHHHcCeeEecCCC
Confidence 32 233211 1112345555544 99999998873 567778888876321 1
Q ss_pred ---CCcEEEEecCCCccccchhhcCCCCCc-------cccCCCCCCHHHHHH----HHHHHHhc----C---CCCCCHHH
Q 002045 518 ---RGQVVLIGATNRVDAIDGALRRPGRFD-------REFNFPLPGCEARAE----ILDIHTRK----W---KQPPSREL 576 (976)
Q Consensus 518 ---~~~vivI~atn~~~~ld~aL~r~gRf~-------~~i~~~~P~~~er~~----Il~~~l~~----~---~~~~~~~~ 576 (976)
.-+|-||++||. .|...+. .|+|. .++.+..|...+|.+ ++.+++++ + ...++.+.
T Consensus 271 ~~i~vdvRiIaaT~~--dL~~~v~-~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a 347 (464)
T COG2204 271 KPIKVDVRIIAATNR--DLEEEVA-AGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEA 347 (464)
T ss_pred cccceeeEEEeecCc--CHHHHHH-cCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHH
Confidence 125789999987 3332222 24443 355666677666553 33333333 2 23455666
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHH
Q 002045 577 KSELAASCVGYCGADLKALCTEAAI 601 (976)
Q Consensus 577 l~~lA~~t~G~s~~dI~~l~~~A~~ 601 (976)
+..|..+.=--+-++|+|++..++.
T Consensus 348 ~~~L~~y~WPGNVREL~N~ver~~i 372 (464)
T COG2204 348 LAALLAYDWPGNVRELENVVERAVI 372 (464)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHh
Confidence 5555444322245678887777664
No 355
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=7.5e-08 Score=107.73 Aligned_cols=138 Identities=20% Similarity=0.283 Sum_probs=95.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCC--------------------cEEEEEecchhHH---------------
Q 002045 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQ--------------------KVSFYMRKGADVL--------------- 455 (976)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~--------------------~~~~~~~~~~~l~--------------- 455 (976)
+.+..+||+||+|+||+++|+++|+.+..... +..++.+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 56778999999999999999999999865321 0112222111000
Q ss_pred ---hh----h-HhHHHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEE
Q 002045 456 ---SK----W-VGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVL 523 (976)
Q Consensus 456 ---~~----~-~g~~~~~l~~~f~~a~----~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~viv 523 (976)
++ . -.-.-..++.+...+. .+..-|+|||++|.| .....+.||..|+ ....++++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLE--EPp~~t~f 165 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL-----------NVAAANALLKTLE--EPPPGTVF 165 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc-----------CHHHHHHHHHHhc--CCCcCcEE
Confidence 00 0 0001234444444432 233459999999998 4567788999999 45667888
Q ss_pred EecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHH
Q 002045 524 IGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIH 564 (976)
Q Consensus 524 I~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~ 564 (976)
|.+|+.++.|.|.+++ |+ ..|.|++|+.++..+.|...
T Consensus 166 iL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 166 LLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred EEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 8899999999999999 87 68999999999988888654
No 356
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=5.3e-08 Score=115.04 Aligned_cols=127 Identities=16% Similarity=0.186 Sum_probs=81.2
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCC-----------------------CeeecCCcccccCCCCCChHHHHHHHHHHHH
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKF-----------------------PVHSLGLPALLSDPSAKTPEEALVHIFGEAR 761 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~-----------------------~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~ 761 (976)
.+||+||+|||||++|+++|+.+.+. .++.++...- .| -..++.++..+.
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~-----~g--vd~ir~ii~~~~ 112 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASR-----TG--VEETKEILDNIQ 112 (546)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccc-----cC--HHHHHHHHHHHH
Confidence 48999999999999999999987431 1222221110 11 234566665554
Q ss_pred h----cCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHH
Q 002045 762 R----TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTED 837 (976)
Q Consensus 762 ~----~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~e 837 (976)
. ....|+||||+|.+... ..+.|+..|+..+ ...+||++||+ + ..+.+ . +.+.-.+++|.+++.++
T Consensus 113 ~~p~~g~~kViIIDEa~~ls~~----a~naLLK~LEepp-~~v~fIL~Ttd-~-~kil~--t-I~SRc~~~~f~~Ls~~e 182 (546)
T PRK14957 113 YMPSQGRYKVYLIDEVHMLSKQ----SFNALLKTLEEPP-EYVKFILATTD-Y-HKIPV--T-ILSRCIQLHLKHISQAD 182 (546)
T ss_pred hhhhcCCcEEEEEechhhccHH----HHHHHHHHHhcCC-CCceEEEEECC-h-hhhhh--h-HHHheeeEEeCCCCHHH
Confidence 2 23469999999997654 3345666666543 34455555655 4 34444 3 33323788999999999
Q ss_pred HHHHHHHHHHH
Q 002045 838 RSLFLGRLIEA 848 (976)
Q Consensus 838 r~~i~~~~l~~ 848 (976)
....++.++.+
T Consensus 183 I~~~L~~il~~ 193 (546)
T PRK14957 183 IKDQLKIILAK 193 (546)
T ss_pred HHHHHHHHHHH
Confidence 99888888773
No 357
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.67 E-value=1.8e-07 Score=115.93 Aligned_cols=197 Identities=25% Similarity=0.270 Sum_probs=120.9
Q ss_pred CCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHH
Q 002045 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVL 455 (976)
Q Consensus 376 ~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~ 455 (976)
..|++|+|.......+.+.+... .....+|||+|++|||||++|++|.......+ .+|+.++|..+.
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~-----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~--~~~v~i~c~~~~ 439 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV-----------AQSDSTVLILGETGTGKELIARAIHNLSGRNN--RRMVKMNCAAMP 439 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCC--CCeEEEecccCC
Confidence 57889999999888887766541 13456899999999999999999998765433 578888886543
Q ss_pred h-----hhHhHHH-------HHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC-------
Q 002045 456 S-----KWVGEAE-------RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD------- 516 (976)
Q Consensus 456 ~-----~~~g~~~-------~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~------- 516 (976)
. ..+|... ......|..+ ...+||||||+.|. ..++..|+..++...
T Consensus 440 ~~~~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL~Ldei~~L~-----------~~~Q~~L~~~l~~~~~~~~g~~ 505 (686)
T PRK15429 440 AGLLESDLFGHERGAFTGASAQRIGRFELA---DKSSLFLDEVGDMP-----------LELQPKLLRVLQEQEFERLGSN 505 (686)
T ss_pred hhHhhhhhcCcccccccccccchhhHHHhc---CCCeEEEechhhCC-----------HHHHHHHHHHHHhCCEEeCCCC
Confidence 2 1222110 0011223333 24599999999883 456677777775321
Q ss_pred --CCCcEEEEecCCCcc--ccc-----hhhcCCCCCccccCCCCCCHHHHHH----HHHHHHhc----CC--C-CCCHHH
Q 002045 517 --SRGQVVLIGATNRVD--AID-----GALRRPGRFDREFNFPLPGCEARAE----ILDIHTRK----WK--Q-PPSREL 576 (976)
Q Consensus 517 --~~~~vivI~atn~~~--~ld-----~aL~r~gRf~~~i~~~~P~~~er~~----Il~~~l~~----~~--~-~~~~~~ 576 (976)
...++.||++|+..- .+. ..|.. |+ ..+.+..|...+|.+ +++.++.. .+ . .++.+.
T Consensus 506 ~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~a 582 (686)
T PRK15429 506 KIIQTDVRLIAATNRDLKKMVADREFRSDLYY--RL-NVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAET 582 (686)
T ss_pred CcccceEEEEEeCCCCHHHHHHcCcccHHHHh--cc-CeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHH
Confidence 113567888887631 111 11211 22 133455565555543 44444432 22 2 367777
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHH
Q 002045 577 KSELAASCVGYCGADLKALCTEAAIR 602 (976)
Q Consensus 577 l~~lA~~t~G~s~~dI~~l~~~A~~~ 602 (976)
+..|..+.=--+-++|++++..|+..
T Consensus 583 l~~L~~y~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 583 LRTLSNMEWPGNVRELENVIERAVLL 608 (686)
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHh
Confidence 77777665445778999999888753
No 358
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=9e-08 Score=109.87 Aligned_cols=129 Identities=16% Similarity=0.284 Sum_probs=80.5
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCC---------CeeecCCcccccCCCCCChHHHHHHHHHHHHhc----CCceEec
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKF---------PVHSLGLPALLSDPSAKTPEEALVHIFGEARRT----TPSILYI 770 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~---------~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~----~p~ilfi 770 (976)
+++|||||||+|||++|+++++.+... ++..+. + ... .......++.++..+... .+.||||
T Consensus 40 ~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~---l-~~~-~~~~~~~i~~l~~~~~~~p~~~~~kiviI 114 (367)
T PRK14970 40 QALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE---L-DAA-SNNSVDDIRNLIDQVRIPPQTGKYKIYII 114 (367)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE---e-ccc-cCCCHHHHHHHHHHHhhccccCCcEEEEE
Confidence 579999999999999999999987431 111111 1 110 112235677777766532 2469999
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 771 PQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 771 DEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
||+|.+.... .+.|+..|+..+ ...++|++| +.+ ..+.+ +...+ -.++.|.+|+.++...++...+.
T Consensus 115 DE~~~l~~~~----~~~ll~~le~~~-~~~~~Il~~-~~~-~kl~~--~l~sr-~~~v~~~~~~~~~l~~~l~~~~~ 181 (367)
T PRK14970 115 DEVHMLSSAA----FNAFLKTLEEPP-AHAIFILAT-TEK-HKIIP--TILSR-CQIFDFKRITIKDIKEHLAGIAV 181 (367)
T ss_pred eChhhcCHHH----HHHHHHHHhCCC-CceEEEEEe-CCc-ccCCH--HHHhc-ceeEecCCccHHHHHHHHHHHHH
Confidence 9999876532 344555565432 334555554 444 34444 22222 25788999999999988887776
No 359
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.66 E-value=7.8e-09 Score=96.84 Aligned_cols=70 Identities=19% Similarity=0.177 Sum_probs=57.2
Q ss_pred hhccccccccccccccCCCC--CCccchHHHhcCCCCHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHHHhhhcC
Q 002045 906 VCNRMLYDKRFSAFHYPVTD--EDAPNYRSIIQNPMDLATLLQRVDSG-------HYVTCSAFLQDVDLIVTNAKVSTC 975 (976)
Q Consensus 906 il~~l~~~~~~~~F~~PV~~--~~~pdY~~~I~~Pmdl~ti~~kl~~~-------~Y~~~~~f~~D~~li~~Na~~yn~ 975 (976)
++.++..++.+++|..||++ ..+|+|+++|++||||+||+++|.++ .|.--..+.+++..++.||..+|.
T Consensus 11 ~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (114)
T cd05494 11 ELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEGRRSPSNI 89 (114)
T ss_pred HHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHccccccccccccccccccccccccccccCcccc
Confidence 33555557889999999999 89999999999999999999999986 455555667777777777777764
No 360
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.65 E-value=1.5e-08 Score=113.86 Aligned_cols=184 Identities=20% Similarity=0.180 Sum_probs=113.1
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcccccCCCCCChH--HHHHHHHHHHHh--------cCCceEeccc
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPSAKTPE--EALVHIFGEARR--------TTPSILYIPQ 772 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~~~~~g~~e--~~~~~~f~~a~~--------~~p~ilfiDE 772 (976)
.|||+|.+||||..+|++|.+... .-||+.++|+.+-... -+|| -..+.+|.-|.. +..+-||+||
T Consensus 248 tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesL--lESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDE 325 (550)
T COG3604 248 TVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESL--LESELFGHEKGAFTGAINTRRGRFELADGGTLFLDE 325 (550)
T ss_pred eEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHH--HHHHHhcccccccccchhccCcceeecCCCeEechh
Confidence 599999999999999999998743 3699999997543211 0111 012333433332 2346899999
Q ss_pred cchhHHHHHHHHHHHH-HHHHhhCCC----CCCEEEEEecCCCcccCcCCCCCCcCCc-----cEEEecCCCHHHHHHHH
Q 002045 773 FNLWWENAHEQLRAVL-LTLLEELPS----HLPILLLGSSSVPLAEVEGDPSTVFPLR-----SVYQVEKPSTEDRSLFL 842 (976)
Q Consensus 773 id~l~~~~~~~~~~~l-~~ll~~~~~----~~~v~vi~ttn~~~~~Ld~~~~~~~~~r-----~~i~v~~P~~~er~~i~ 842 (976)
|..+.-..+..++++| ...++.+.+ .-.|-||||||+....+ ...+.|+.+ .||.+..|...||..-+
T Consensus 326 IGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~~--V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DI 403 (550)
T COG3604 326 IGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEEM--VRDGEFRADLYYRLSVFPLELPPLRERPEDI 403 (550)
T ss_pred hccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHHHH--HHcCcchhhhhhcccccccCCCCcccCCccH
Confidence 9999988888877777 334555543 34789999999873333 346666654 88889999999987533
Q ss_pred HHHHHHHHhhhhccCCCC--CCCCCCCCCCCCCCCCCCCCchhHHHHHH-HHHHHH
Q 002045 843 GRLIEAAVSVVLEGRSKK--PQESVSLPELPKVPTVESGPKASELKAKV-EAEQHA 895 (976)
Q Consensus 843 ~~~l~~~~~~~~~~~~~~--~~~~~dl~~La~~~~~~sg~s~aelk~~~-ea~~~a 895 (976)
-.+...++.......+.. ......++.|.... |+| ...||+.++ .++..+
T Consensus 404 plLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~--wPG-NVRELen~veRavlla 456 (550)
T COG3604 404 PLLAGYFLEKFRRRLGRAILSLSAEALELLSSYE--WPG-NVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCC--CCC-cHHHHHHHHHHHHHHh
Confidence 333322221111111110 01122333444443 555 668888888 555544
No 361
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.64 E-value=6.7e-08 Score=116.52 Aligned_cols=134 Identities=22% Similarity=0.284 Sum_probs=88.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhHhHHH--HHHH--------HHHHHHHhcCCcEEE
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAE--RQLK--------LLFEEAQRNQPSIIF 482 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~g~~~--~~l~--------~~f~~a~~~~p~VL~ 482 (976)
-.+|||.|+||||||++|++++..+... .+|+.+.........+|... ..+. .++.. ....|||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~---~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~---A~~GvL~ 89 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPI---MPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDE---APRGVLY 89 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcC---CCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeee---CCCCcEe
Confidence 3589999999999999999999987532 24555543222222233210 0000 01111 1234999
Q ss_pred EccccccCCCCCChhhhhHHHHHHHHHHHhhccC-----------CCCcEEEEecCCCcc---ccchhhcCCCCCccccC
Q 002045 483 FDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-----------SRGQVVLIGATNRVD---AIDGALRRPGRFDREFN 548 (976)
Q Consensus 483 iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~-----------~~~~vivI~atn~~~---~ld~aL~r~gRf~~~i~ 548 (976)
||||+.| ...++..|+..|+.-. ....+.||+++|..+ .+.++|.. ||...|.
T Consensus 90 lDEi~rl-----------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~ 156 (589)
T TIGR02031 90 VDMANLL-----------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVS 156 (589)
T ss_pred ccchhhC-----------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeee
Confidence 9999988 4567788888886321 113678899988865 58889988 9988776
Q ss_pred CCC-CCHHHHHHHHHHHH
Q 002045 549 FPL-PGCEARAEILDIHT 565 (976)
Q Consensus 549 ~~~-P~~~er~~Il~~~l 565 (976)
+.. |..++|.+|++..+
T Consensus 157 ~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 157 LEDVASQDLRVEIVRRER 174 (589)
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 654 57788889887754
No 362
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.63 E-value=5.1e-08 Score=115.25 Aligned_cols=127 Identities=13% Similarity=0.208 Sum_probs=82.1
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCC-----------------------eeecCCcccccCCCCCChHHHHHHHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFP-----------------------VHSLGLPALLSDPSAKTPEEALVHIFGEA 760 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~-----------------------~~~~~~~~l~~~~~~g~~e~~~~~~f~~a 760 (976)
..+||+||+|||||++|+++|+.+.+.. ++.++.+. ...-..++.+...+
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas-------~igVd~IReIi~~~ 111 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAAS-------NNGVDEIRNIIDNI 111 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEecccc-------ccCHHHHHHHHHHH
Confidence 3599999999999999999999874322 12222110 01123467776655
Q ss_pred Hhc----CCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHH
Q 002045 761 RRT----TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTE 836 (976)
Q Consensus 761 ~~~----~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~ 836 (976)
... ...|++|||+|.+.... .+.|+..|+..+. .+++|.+|+.+ ..|.+ ..+.+ -.++.|.+|+..
T Consensus 112 ~~~P~~~~~KVIIIDEad~Lt~~A----~NaLLKtLEEPp~--~tvfIL~Tt~~-~KLl~--TI~SR-cq~ieF~~Ls~~ 181 (605)
T PRK05896 112 NYLPTTFKYKVYIIDEAHMLSTSA----WNALLKTLEEPPK--HVVFIFATTEF-QKIPL--TIISR-CQRYNFKKLNNS 181 (605)
T ss_pred HhchhhCCcEEEEEechHhCCHHH----HHHHHHHHHhCCC--cEEEEEECCCh-HhhhH--HHHhh-hhhcccCCCCHH
Confidence 542 23599999999986443 3456677765443 34444455555 45544 32222 257889999999
Q ss_pred HHHHHHHHHHH
Q 002045 837 DRSLFLGRLIE 847 (976)
Q Consensus 837 er~~i~~~~l~ 847 (976)
+....++..+.
T Consensus 182 eL~~~L~~il~ 192 (605)
T PRK05896 182 ELQELLKSIAK 192 (605)
T ss_pred HHHHHHHHHHH
Confidence 99999988876
No 363
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.63 E-value=1e-07 Score=107.23 Aligned_cols=172 Identities=17% Similarity=0.176 Sum_probs=104.3
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc---CCCeeecCCcccccCC------------CCCChHHHHHHHHHHHHhcCCceE
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE---KFPVHSLGLPALLSDP------------SAKTPEEALVHIFGEARRTTPSIL 768 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~---~~~~~~~~~~~l~~~~------------~~g~~e~~~~~~f~~a~~~~p~il 768 (976)
..+|+.|++||||+++|++|+.... .-||++++|+.+-... +.| ....-..+|+.| ..++|
T Consensus 102 ~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftG-a~~~k~Glfe~A---~GGtL 177 (403)
T COG1221 102 LPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTG-AQGGKAGLFEQA---NGGTL 177 (403)
T ss_pred CcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeec-ccCCcCchheec---CCCEE
Confidence 3599999999999999999986533 3599999997654321 011 111122344443 45699
Q ss_pred eccccchhHHHHHHHHHHHHHHHHhh-----CC----CCCCEEEEEecCCCcccCcC-CCC--CCcCCccEEEecCCCHH
Q 002045 769 YIPQFNLWWENAHEQLRAVLLTLLEE-----LP----SHLPILLLGSSSVPLAEVEG-DPS--TVFPLRSVYQVEKPSTE 836 (976)
Q Consensus 769 fiDEid~l~~~~~~~~~~~l~~ll~~-----~~----~~~~v~vi~ttn~~~~~Ld~-~~~--~~~~~r~~i~v~~P~~~ 836 (976)
|+|||..+....+..+ +.+|+. +. ....|.+|+||+.. ++. .++ -+++.+.++.|.+|+..
T Consensus 178 fLDEI~~LP~~~Q~kL----l~~le~g~~~rvG~~~~~~~dVRli~AT~~~---l~~~~~~g~dl~~rl~~~~I~LPpLr 250 (403)
T COG1221 178 FLDEIHRLPPEGQEKL----LRVLEEGEYRRVGGSQPRPVDVRLICATTED---LEEAVLAGADLTRRLNILTITLPPLR 250 (403)
T ss_pred ehhhhhhCCHhHHHHH----HHHHHcCceEecCCCCCcCCCceeeeccccC---HHHHHHhhcchhhhhcCceecCCChh
Confidence 9999999988777764 445554 21 24578889998855 444 223 44443577889999999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCCCCC--CCCCCCCCCCCCCCCchhHHHHHH
Q 002045 837 DRSLFLGRLIEAAVSVVLEGRSKKPQESV--SLPELPKVPTVESGPKASELKAKV 889 (976)
Q Consensus 837 er~~i~~~~l~~~~~~~~~~~~~~~~~~~--dl~~La~~~~~~sg~s~aelk~~~ 889 (976)
+|..=...++..+++......+....... .+..|-.+ .|+| ...||++++
T Consensus 251 ER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y--~~pG-NirELkN~V 302 (403)
T COG1221 251 ERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAY--DWPG-NIRELKNLV 302 (403)
T ss_pred hchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC--CCCC-cHHHHHHHH
Confidence 98765555555544433332222222111 11222222 2344 567777776
No 364
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.63 E-value=5.8e-08 Score=109.06 Aligned_cols=142 Identities=17% Similarity=0.164 Sum_probs=87.8
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcccccCC----CCCCh----H---HHHHHHHHHHHhcCCceEecc
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDP----SAKTP----E---EALVHIFGEARRTTPSILYIP 771 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~~~----~~g~~----e---~~~~~~f~~a~~~~p~ilfiD 771 (976)
.|||+|++||||+++|++|..... ..||+.++|..+-... ..|.. . ..-..+|..| ..++||||
T Consensus 24 pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ld 100 (329)
T TIGR02974 24 PVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGTLFLD 100 (329)
T ss_pred CEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCEEEeC
Confidence 499999999999999999987643 3699999987542110 00100 0 0001123333 45799999
Q ss_pred ccchhHHHHHHHHHHHHHHH-HhhCC----CCCCEEEEEecCCCcccCcCCCCCCcCC----c-cEEEecCCCHHHHHHH
Q 002045 772 QFNLWWENAHEQLRAVLLTL-LEELP----SHLPILLLGSSSVPLAEVEGDPSTVFPL----R-SVYQVEKPSTEDRSLF 841 (976)
Q Consensus 772 Eid~l~~~~~~~~~~~l~~l-l~~~~----~~~~v~vi~ttn~~~~~Ld~~~~~~~~~----r-~~i~v~~P~~~er~~i 841 (976)
||+.|....+..++..|..- +..+. ...++.||+||+.....+-. ...|+. + .++.|..|...+|.+-
T Consensus 101 ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~--~g~fr~dL~~rl~~~~i~lPpLReR~eD 178 (329)
T TIGR02974 101 ELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAA--EGRFRADLLDRLAFDVITLPPLRERQED 178 (329)
T ss_pred ChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhh--cCchHHHHHHHhcchhcCCCchhhhhhh
Confidence 99999887777765544221 01111 13467899999876333322 344432 2 3667899999998876
Q ss_pred HHHHHHHHHh
Q 002045 842 LGRLIEAAVS 851 (976)
Q Consensus 842 ~~~~l~~~~~ 851 (976)
+..++..++.
T Consensus 179 I~~L~~~fl~ 188 (329)
T TIGR02974 179 IMLLAEHFAI 188 (329)
T ss_pred HHHHHHHHHH
Confidence 6666554433
No 365
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.62 E-value=2.1e-07 Score=114.25 Aligned_cols=139 Identities=22% Similarity=0.278 Sum_probs=86.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEE-ecchhHHhhhH-hH--HHHHH--HHHHHHHHhcCCcEEEEccc
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM-RKGADVLSKWV-GE--AERQL--KLLFEEAQRNQPSIIFFDEI 486 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~-~~~~~l~~~~~-g~--~~~~l--~~~f~~a~~~~p~VL~iDEi 486 (976)
.+++||-|.||+|||+++.|+|+..+....++++.. .+..++++.++ ++ ++-.. ..++...+.+ ..|++||+
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G--~WVlLDEi 1620 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG--GWVLLDEI 1620 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC--CEEEeehh
Confidence 467999999999999999999999985443333211 11122333221 11 11011 1222333322 48999999
Q ss_pred cccCCCCCChhhhhHHHHHHHHHHHhhcc------------CCCCcEEEEecCCCcc------ccchhhcCCCCCccccC
Q 002045 487 DGLAPVRSSKQEQIHNSIVSTLLALMDGL------------DSRGQVVLIGATNRVD------AIDGALRRPGRFDREFN 548 (976)
Q Consensus 487 d~L~~~r~~~~~~~~~~~~~~Ll~~ld~~------------~~~~~vivI~atn~~~------~ld~aL~r~gRf~~~i~ 548 (976)
. |+ +..++.-|-.+++.- ....++.|+||-|+.. .|+..+.. || .++.
T Consensus 1621 N-La----------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RF-svV~ 1686 (4600)
T COG5271 1621 N-LA----------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RF-SVVK 1686 (4600)
T ss_pred h-hh----------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hh-heEE
Confidence 5 33 556777777776632 1234678888888854 38888888 89 4577
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 002045 549 FPLPGCEARAEILDIHTRK 567 (976)
Q Consensus 549 ~~~P~~~er~~Il~~~l~~ 567 (976)
+...+.++...|...+..+
T Consensus 1687 ~d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1687 MDGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred ecccccchHHHHHHhhCCc
Confidence 7888888877777666553
No 366
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.62 E-value=8.1e-08 Score=115.75 Aligned_cols=134 Identities=14% Similarity=0.210 Sum_probs=82.6
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeec--CC----------ccccc-CCCCCChHHHHHHHHHHHHhc----CCc
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSL--GL----------PALLS-DPSAKTPEEALVHIFGEARRT----TPS 766 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~--~~----------~~l~~-~~~~g~~e~~~~~~f~~a~~~----~p~ 766 (976)
..+||+||+|||||++|+++|+.+.+...... .| ..++. +......-..++.+...+... ...
T Consensus 41 HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~K 120 (725)
T PRK07133 41 HAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYK 120 (725)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCE
Confidence 35799999999999999999998743211000 00 01110 000012244577777776543 346
Q ss_pred eEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHH
Q 002045 767 ILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLI 846 (976)
Q Consensus 767 ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l 846 (976)
|++|||+|.+... ..+.|+..|+..+ . .+++|.+|+.+ +.|.+ ..+-+ -.++.|.+|+.++...+++..+
T Consensus 121 V~IIDEa~~LT~~----A~NALLKtLEEPP-~-~tifILaTte~-~KLl~--TI~SR-cq~ieF~~L~~eeI~~~L~~il 190 (725)
T PRK07133 121 IYIIDEVHMLSKS----AFNALLKTLEEPP-K-HVIFILATTEV-HKIPL--TILSR-VQRFNFRRISEDEIVSRLEFIL 190 (725)
T ss_pred EEEEEChhhCCHH----HHHHHHHHhhcCC-C-ceEEEEEcCCh-hhhhH--HHHhh-ceeEEccCCCHHHHHHHHHHHH
Confidence 9999999998653 3445666666543 3 44444455555 45554 22222 2588899999999999998877
Q ss_pred H
Q 002045 847 E 847 (976)
Q Consensus 847 ~ 847 (976)
.
T Consensus 191 ~ 191 (725)
T PRK07133 191 E 191 (725)
T ss_pred H
Confidence 6
No 367
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.8e-07 Score=105.94 Aligned_cols=140 Identities=15% Similarity=0.195 Sum_probs=96.9
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcC----CCeeecCCcccccCC--------------CCC-ChHHHHHHHHHHHHh-c
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEK----FPVHSLGLPALLSDP--------------SAK-TPEEALVHIFGEARR-T 763 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~----~~~~~~~~~~l~~~~--------------~~g-~~e~~~~~~f~~a~~-~ 763 (976)
.+++++|+||||||.+++.++.++.. ..++.|+|..+-+.| ..| .+.+....+++.... .
T Consensus 43 ~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~ 122 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKG 122 (366)
T ss_pred ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcC
Confidence 46999999999999999999998633 227888875332211 011 222334444444433 4
Q ss_pred CCceEeccccchhHHHHHHHHHHHHHHHHhhCCC-CCCEEEEEecCCC--cccCcCCCCCCcCCccEEEecCCCHHHHHH
Q 002045 764 TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPS-HLPILLLGSSSVP--LAEVEGDPSTVFPLRSVYQVEKPSTEDRSL 840 (976)
Q Consensus 764 ~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~-~~~v~vi~ttn~~--~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~ 840 (976)
...||.+||+|.|....+ ..|.+++..... ...|.||+.+|.. .+.|++.+.+.+.... |.|++++.+|...
T Consensus 123 ~~~IvvLDEid~L~~~~~----~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~-I~F~pY~a~el~~ 197 (366)
T COG1474 123 KTVIVILDEVDALVDKDG----EVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSE-IVFPPYTAEELYD 197 (366)
T ss_pred CeEEEEEcchhhhccccc----hHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhhccCcce-eeeCCCCHHHHHH
Confidence 457888999999997666 445555544433 5678999999987 4557776666666455 6699999999999
Q ss_pred HHHHHHHH
Q 002045 841 FLGRLIEA 848 (976)
Q Consensus 841 i~~~~l~~ 848 (976)
|++.-.+.
T Consensus 198 Il~~R~~~ 205 (366)
T COG1474 198 ILRERVEE 205 (366)
T ss_pred HHHHHHHh
Confidence 99987774
No 368
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.62 E-value=7.4e-08 Score=108.77 Aligned_cols=128 Identities=22% Similarity=0.257 Sum_probs=80.7
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCccccc-CCCCCChHHHHH----H--------HHHHHHhcCCceEec
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLS-DPSAKTPEEALV----H--------IFGEARRTTPSILYI 770 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~-~~~~g~~e~~~~----~--------~f~~a~~~~p~ilfi 770 (976)
.++||.||||||||++|+++|..+ +.+|+.+.+...+. .-..|...-... . +|.... +|||+
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l-~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~ 118 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARAL-GLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLL 118 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHh-CCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEEE
Confidence 479999999999999999999998 68999988753322 111122111110 0 111111 49999
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhC----------CCCCCEEEEEecC-----CCcccCcCCCCCCcCCccEEEecCC-C
Q 002045 771 PQFNLWWENAHEQLRAVLLTLLEEL----------PSHLPILLLGSSS-----VPLAEVEGDPSTVFPLRSVYQVEKP-S 834 (976)
Q Consensus 771 DEid~l~~~~~~~~~~~l~~ll~~~----------~~~~~v~vi~ttn-----~~~~~Ld~~~~~~~~~r~~i~v~~P-~ 834 (976)
|||....+ .+.++|+..|+.. .-..+.+||+|+| .- ..|++ +.+.++-..+.++.| .
T Consensus 119 DEInra~p----~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~-~~l~e--A~ldRf~~~~~v~yp~~ 191 (329)
T COG0714 119 DEINRAPP----EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGT-YPLPE--ALLDRFLLRIYVDYPDS 191 (329)
T ss_pred eccccCCH----HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCC-cCCCH--HHHhhEEEEEecCCCCc
Confidence 99999554 5556677777652 1236788898888 33 34565 555554456778888 5
Q ss_pred HHHHHHHHH
Q 002045 835 TEDRSLFLG 843 (976)
Q Consensus 835 ~~er~~i~~ 843 (976)
..+...++.
T Consensus 192 ~~e~~~i~~ 200 (329)
T COG0714 192 EEEERIILA 200 (329)
T ss_pred hHHHHHHHH
Confidence 554444444
No 369
>PRK09087 hypothetical protein; Validated
Probab=98.62 E-value=8.1e-08 Score=102.08 Aligned_cols=119 Identities=15% Similarity=0.119 Sum_probs=78.0
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHHHHHHH
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHEQL 784 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~~~~~ 784 (976)
.++|+||+|||||||++++++.. +.. .++...+. ..++..... .+|+||+++.+. ..+..+
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~-~~~--~i~~~~~~------------~~~~~~~~~---~~l~iDDi~~~~-~~~~~l 106 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKS-DAL--LIHPNEIG------------SDAANAAAE---GPVLIEDIDAGG-FDETGL 106 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhc-CCE--EecHHHcc------------hHHHHhhhc---CeEEEECCCCCC-CCHHHH
Confidence 48999999999999999999874 332 33322111 112222111 478899999863 234555
Q ss_pred HHHHHHHHhhCCCCCCEEEEEecCCCcccCc---CCCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 785 RAVLLTLLEELPSHLPILLLGSSSVPLAEVE---GDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 785 ~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld---~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
...++.+.+ ....+||+++..| ..+. +.+.+++.+..++++..|+.++|.+|++..+.
T Consensus 107 f~l~n~~~~----~g~~ilits~~~p-~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 107 FHLINSVRQ----AGTSLLMTSRLWP-SSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred HHHHHHHHh----CCCeEEEECCCCh-HHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 555555553 3455666555444 4333 34566666668999999999999999999887
No 370
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.62 E-value=1.1e-07 Score=111.92 Aligned_cols=178 Identities=22% Similarity=0.287 Sum_probs=102.9
Q ss_pred CCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCc------------
Q 002045 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQK------------ 443 (976)
Q Consensus 376 ~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~------------ 443 (976)
..|.+|.|+..+++.|.-.+ ....+++|+||||||||++++.++..+......
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 47899999998877664432 334689999999999999999999755321111
Q ss_pred -----------EEEEEecchhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHh
Q 002045 444 -----------VSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALM 512 (976)
Q Consensus 444 -----------~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~l 512 (976)
.+|....++......+|.....-...+..|. ..||||||++.+ ...++..|+..|
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~---~GvLfLDEi~e~-----------~~~~~~~L~~~L 319 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAH---NGVLFLDELPEF-----------KRSVLDALREPI 319 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccC---CCeEecCChhhC-----------CHHHHHHHHHHH
Confidence 1111111111111111211000111223332 349999999877 356777788877
Q ss_pred hccC-----------CCCcEEEEecCCCcc-----------------------ccchhhcCCCCCccccCCCCCCHHHHH
Q 002045 513 DGLD-----------SRGQVVLIGATNRVD-----------------------AIDGALRRPGRFDREFNFPLPGCEARA 558 (976)
Q Consensus 513 d~~~-----------~~~~vivI~atn~~~-----------------------~ld~aL~r~gRf~~~i~~~~P~~~er~ 558 (976)
+.-. ...++.+|+++|+.- .|...|+. ||+..+.++.++..+
T Consensus 320 E~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~-- 395 (499)
T TIGR00368 320 EDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEK-- 395 (499)
T ss_pred HcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHH--
Confidence 6421 124688999998731 25566666 777777777665442
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhh
Q 002045 559 EILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREK 607 (976)
Q Consensus 559 ~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~ 607 (976)
+.....+-+-++++.-+..|......|.
T Consensus 396 ---------------------l~~~~~~e~s~~ir~rV~~Ar~~q~~R~ 423 (499)
T TIGR00368 396 ---------------------LLSTGSGESSAEVKQRVIKAREIQNIRY 423 (499)
T ss_pred ---------------------HhccCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 1122234455666666666655555443
No 371
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.61 E-value=9.7e-08 Score=111.62 Aligned_cols=127 Identities=17% Similarity=0.181 Sum_probs=78.8
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCC------------------------CeeecCCcccccCCCCCChHHHHHHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKF------------------------PVHSLGLPALLSDPSAKTPEEALVHIFGE 759 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~------------------------~~~~~~~~~l~~~~~~g~~e~~~~~~f~~ 759 (976)
..+||+||||+|||++|+++|+.+.+. .++.++.... .| -..++.+...
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~~~-----~g--id~ir~i~~~ 112 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGASH-----RG--IEDIRQINET 112 (451)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEeecccc-----CC--HHHHHHHHHH
Confidence 458999999999999999999987431 1222211100 01 1334443332
Q ss_pred HH----hcCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCH
Q 002045 760 AR----RTTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPST 835 (976)
Q Consensus 760 a~----~~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~ 835 (976)
+. .....||+|||+|.+.... .+.|+..|+..+. .+++|.+|+.+ ..|.+ . +++.-.+++|..++.
T Consensus 113 l~~~~~~~~~kvvIIdead~lt~~~----~n~LLk~lEep~~--~~~~Il~t~~~-~kl~~--t-I~sRc~~v~f~~l~~ 182 (451)
T PRK06305 113 VLFTPSKSRYKIYIIDEVHMLTKEA----FNSLLKTLEEPPQ--HVKFFLATTEI-HKIPG--T-ILSRCQKMHLKRIPE 182 (451)
T ss_pred HHhhhhcCCCEEEEEecHHhhCHHH----HHHHHHHhhcCCC--CceEEEEeCCh-Hhcch--H-HHHhceEEeCCCCCH
Confidence 22 2456799999999986543 3456667766433 44444455655 34443 2 222126888999999
Q ss_pred HHHHHHHHHHHH
Q 002045 836 EDRSLFLGRLIE 847 (976)
Q Consensus 836 ~er~~i~~~~l~ 847 (976)
++...+++..+.
T Consensus 183 ~el~~~L~~~~~ 194 (451)
T PRK06305 183 ETIIDKLALIAK 194 (451)
T ss_pred HHHHHHHHHHHH
Confidence 999888887776
No 372
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.60 E-value=2.2e-07 Score=103.52 Aligned_cols=166 Identities=27% Similarity=0.323 Sum_probs=105.7
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC--CcEEEE--Ee-
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG--QKVSFY--MR- 449 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~--~~~~~~--~~- 449 (976)
...|.-++|++..+..|.-.... +.-.++||.|+.||||||++|+|+..|...- ..++|. -.
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~-------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVD-------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhcc-------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 46677899999998877443222 2345899999999999999999998874211 001000 00
Q ss_pred ---cchhHHhh-------------------hHhHHHHHH------HHHHH----------HHHhcCCcEEEEccccccCC
Q 002045 450 ---KGADVLSK-------------------WVGEAERQL------KLLFE----------EAQRNQPSIIFFDEIDGLAP 491 (976)
Q Consensus 450 ---~~~~l~~~-------------------~~g~~~~~l------~~~f~----------~a~~~~p~VL~iDEid~L~~ 491 (976)
.|..+..+ -.|.++.++ ..... .++.+ ..||+|||+..|
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An-RGIlYvDEvnlL-- 156 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN-RGILYVDEVNLL-- 156 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc-CCEEEEeccccc--
Confidence 00111111 112222211 11111 01112 239999999877
Q ss_pred CCCChhhhhHHHHHHHHHHHhhcc-----------CCCCcEEEEecCCCcc-ccchhhcCCCCCccccCCCCC-CHHHHH
Q 002045 492 VRSSKQEQIHNSIVSTLLALMDGL-----------DSRGQVVLIGATNRVD-AIDGALRRPGRFDREFNFPLP-GCEARA 558 (976)
Q Consensus 492 ~r~~~~~~~~~~~~~~Ll~~ld~~-----------~~~~~vivI~atn~~~-~ld~aL~r~gRf~~~i~~~~P-~~~er~ 558 (976)
...++..||..+..- ....++++|+|+|+-+ .|-+.|+. ||...+.+..| +.+++.
T Consensus 157 ---------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv 225 (423)
T COG1239 157 ---------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERV 225 (423)
T ss_pred ---------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHH
Confidence 567888898887641 1234789999999854 48888888 99999988766 679999
Q ss_pred HHHHHHHhc
Q 002045 559 EILDIHTRK 567 (976)
Q Consensus 559 ~Il~~~l~~ 567 (976)
+|+...+..
T Consensus 226 ~Ii~r~~~f 234 (423)
T COG1239 226 EIIRRRLAF 234 (423)
T ss_pred HHHHHHHHh
Confidence 999876654
No 373
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=7.4e-08 Score=115.28 Aligned_cols=126 Identities=16% Similarity=0.232 Sum_probs=79.4
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCC----------------------------CeeecCCcccccCCCCCChHHHHHHH
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKF----------------------------PVHSLGLPALLSDPSAKTPEEALVHI 756 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~----------------------------~~~~~~~~~l~~~~~~g~~e~~~~~~ 756 (976)
.+||+||+|||||++|+++|+.+... .++.++... ...-..++.+
T Consensus 40 a~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas-------~~~Vd~iRel 112 (618)
T PRK14951 40 AYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAAS-------NRGVDEVQQL 112 (618)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCccc-------ccCHHHHHHH
Confidence 47999999999999999999987531 122222110 1122356777
Q ss_pred HHHHHhc----CCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecC
Q 002045 757 FGEARRT----TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEK 832 (976)
Q Consensus 757 f~~a~~~----~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~ 832 (976)
...+... ...|++|||+|.+.... .+.|+..|+..+ ...+||++|| .+ ..+.. . +.+.-.+|.|..
T Consensus 113 i~~~~~~p~~g~~KV~IIDEvh~Ls~~a----~NaLLKtLEEPP-~~~~fIL~Tt-d~-~kil~--T-IlSRc~~~~f~~ 182 (618)
T PRK14951 113 LEQAVYKPVQGRFKVFMIDEVHMLTNTA----FNAMLKTLEEPP-EYLKFVLATT-DP-QKVPV--T-VLSRCLQFNLRP 182 (618)
T ss_pred HHHHHhCcccCCceEEEEEChhhCCHHH----HHHHHHhcccCC-CCeEEEEEEC-Cc-hhhhH--H-HHHhceeeecCC
Confidence 6655432 23599999999987544 334555554433 3345555554 44 34443 3 333126888999
Q ss_pred CCHHHHHHHHHHHHH
Q 002045 833 PSTEDRSLFLGRLIE 847 (976)
Q Consensus 833 P~~~er~~i~~~~l~ 847 (976)
++.++....++.++.
T Consensus 183 Ls~eei~~~L~~i~~ 197 (618)
T PRK14951 183 MAPETVLEHLTQVLA 197 (618)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988876
No 374
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=4.3e-07 Score=100.70 Aligned_cols=134 Identities=15% Similarity=0.159 Sum_probs=92.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCC------------------cEEEEEecchhHHhhhHhHHHHHHHHHHHH
Q 002045 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQ------------------KVSFYMRKGADVLSKWVGEAERQLKLLFEE 472 (976)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~------------------~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~ 472 (976)
+.+..+||+||.|+||+++|+++|+.+..... +..|+.+....- ++.+ .-..++.+.+.
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~~I--~vdqiR~l~~~ 99 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKE-GKSI--TVEQIRQCNRL 99 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcC-CCcC--CHHHHHHHHHH
Confidence 45678999999999999999999998854321 112222222100 0001 11233443333
Q ss_pred HH----hcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCccccchhhcCCCCCccccC
Q 002045 473 AQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFN 548 (976)
Q Consensus 473 a~----~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~ 548 (976)
+. .+..-|++||++|.| .....+.||..++. ...++++|..|+.++.|-|.+++ |+ ..+.
T Consensus 100 ~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RC-q~~~ 163 (319)
T PRK06090 100 AQESSQLNGYRLFVIEPADAM-----------NESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RC-QQWV 163 (319)
T ss_pred HhhCcccCCceEEEecchhhh-----------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cc-eeEe
Confidence 32 233459999999988 45677889999994 55678888888889999999999 77 5789
Q ss_pred CCCCCHHHHHHHHHH
Q 002045 549 FPLPGCEARAEILDI 563 (976)
Q Consensus 549 ~~~P~~~er~~Il~~ 563 (976)
|++|+.++..+.|..
T Consensus 164 ~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 164 VTPPSTAQAMQWLKG 178 (319)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999988887754
No 375
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.3e-07 Score=104.02 Aligned_cols=90 Identities=21% Similarity=0.340 Sum_probs=71.7
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHH-HHHHHHHH----HhcCCceEeccccchhHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEA-LVHIFGEA----RRTTPSILYIPQFNLWWE 778 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~-~~~~f~~a----~~~~p~ilfiDEid~l~~ 778 (976)
..+||.||+|+|||+||+.||+.+ ..||...++..|.-..|+|+--+. |.+++..| .+.+-.||||||+|++..
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~l-dVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVL-DVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHh-CCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 469999999999999999999999 799999999998776567865444 45566654 245568999999999982
Q ss_pred H----------HHHHHHHHHHHHHhh
Q 002045 779 N----------AHEQLRAVLLTLLEE 794 (976)
Q Consensus 779 ~----------~~~~~~~~l~~ll~~ 794 (976)
. .++-+.+.|+.+|++
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred cCccccccccccchhHHHHHHHHhcc
Confidence 2 346677889999975
No 376
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.59 E-value=2.9e-07 Score=95.22 Aligned_cols=125 Identities=22% Similarity=0.215 Sum_probs=79.4
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCC-----------------------CeeecCCcccccCCCCCChHHHHHHHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKF-----------------------PVHSLGLPALLSDPSAKTPEEALVHIFGEA 760 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~-----------------------~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a 760 (976)
..+||+||+|+|||++|++++..+.+. .+..+.... . .-.-+.++.+...+
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~---~~~~~~i~~i~~~~ 88 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q---SIKVDQVRELVEFL 88 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C---cCCHHHHHHHHHHH
Confidence 459999999999999999999986432 112211100 0 01234666666666
Q ss_pred Hh----cCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHH
Q 002045 761 RR----TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTE 836 (976)
Q Consensus 761 ~~----~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~ 836 (976)
.. ....||+|||+|.+..... +.|+..|+..+ ...++|+ +|+.+ ..|.+ +.+.+ -.++.|.+|+.+
T Consensus 89 ~~~~~~~~~kviiide~~~l~~~~~----~~Ll~~le~~~-~~~~~il-~~~~~-~~l~~--~i~sr-~~~~~~~~~~~~ 158 (188)
T TIGR00678 89 SRTPQESGRRVVIIEDAERMNEAAA----NALLKTLEEPP-PNTLFIL-ITPSP-EKLLP--TIRSR-CQVLPFPPLSEE 158 (188)
T ss_pred ccCcccCCeEEEEEechhhhCHHHH----HHHHHHhcCCC-CCeEEEE-EECCh-HhChH--HHHhh-cEEeeCCCCCHH
Confidence 54 3346999999999876443 34667776643 3344444 45555 55655 33333 268889999999
Q ss_pred HHHHHHHH
Q 002045 837 DRSLFLGR 844 (976)
Q Consensus 837 er~~i~~~ 844 (976)
+...+++.
T Consensus 159 ~~~~~l~~ 166 (188)
T TIGR00678 159 ALLQWLIR 166 (188)
T ss_pred HHHHHHHH
Confidence 98777763
No 377
>PRK08116 hypothetical protein; Validated
Probab=98.59 E-value=5.9e-08 Score=105.80 Aligned_cols=107 Identities=22% Similarity=0.279 Sum_probs=63.2
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcccccCCC---CCChHHHHHHHHHHHHhcCCceEeccccchhHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPS---AKTPEEALVHIFGEARRTTPSILYIPQFNLWWE 778 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~~~~---~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~ 778 (976)
.+++|+|++||||||||.+|++++. +.+++.++.++++..+. .+........++.... ...+|+||++....
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~- 191 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER- 191 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC-
Confidence 3699999999999999999999862 56778888776654320 1111111223333332 34699999996432
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCc
Q 002045 779 NAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVE 815 (976)
Q Consensus 779 ~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld 815 (976)
..+.....|..+|+..-. .+.-+|.|||.++..|.
T Consensus 192 -~t~~~~~~l~~iin~r~~-~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 192 -DTEWAREKVYNIIDSRYR-KGLPTIVTTNLSLEELK 226 (268)
T ss_pred -CCHHHHHHHHHHHHHHHH-CCCCEEEECCCCHHHHH
Confidence 122233334444443211 12236668888866654
No 378
>PHA02244 ATPase-like protein
Probab=98.58 E-value=1e-07 Score=105.91 Aligned_cols=127 Identities=13% Similarity=0.181 Sum_probs=74.8
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCc----ccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLP----ALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN 779 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~----~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~ 779 (976)
..+||+||||||||++|++||+.+ +.+|+.++.- .+. ++ +.........-|-.|.+ .+++||||||+.+.+.
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~l-g~pfv~In~l~d~~~L~-G~-i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~p~ 195 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEAL-DLDFYFMNAIMDEFELK-GF-IDANGKFHETPFYEAFK-KGGLFFIDEIDASIPE 195 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh-CCCEEEEecChHHHhhc-cc-ccccccccchHHHHHhh-cCCEEEEeCcCcCCHH
Confidence 359999999999999999999997 7899888732 111 11 11111111112333332 4689999999998766
Q ss_pred HHHHHHHHHHH-HHhhC----CCCCCEEEEEecCCCc----------ccCcCCCCCCcCCccEEEecCCCHHH
Q 002045 780 AHEQLRAVLLT-LLEEL----PSHLPILLLGSSSVPL----------AEVEGDPSTVFPLRSVYQVEKPSTED 837 (976)
Q Consensus 780 ~~~~~~~~l~~-ll~~~----~~~~~v~vi~ttn~~~----------~~Ld~~~~~~~~~r~~i~v~~P~~~e 837 (976)
....+...+.. +++.. ....++.||+|+|.+. ..|++....|| .+++|..|+..|
T Consensus 196 vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF---v~I~~dyp~~~E 265 (383)
T PHA02244 196 ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF---APIEFDYDEKIE 265 (383)
T ss_pred HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc---EEeeCCCCcHHH
Confidence 55543333311 11111 1135788999999742 23343222333 367788887433
No 379
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.58 E-value=2.4e-07 Score=114.76 Aligned_cols=176 Identities=17% Similarity=0.211 Sum_probs=102.7
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcccccC----CC--------CCChHHHHHHHHHHHHhcCCceEec
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSD----PS--------AKTPEEALVHIFGEARRTTPSILYI 770 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~~----~~--------~g~~e~~~~~~f~~a~~~~p~ilfi 770 (976)
.|||+|++|||||++|++|++... +.+|+.++|..+-.. .. .|..... ...|.. ...++|||
T Consensus 401 pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~-~g~le~---a~~GtL~L 476 (686)
T PRK15429 401 TVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQR-IGRFEL---ADKSSLFL 476 (686)
T ss_pred CEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCcccccccccccch-hhHHHh---cCCCeEEE
Confidence 599999999999999999998642 469999998764221 00 1111111 123333 34579999
Q ss_pred cccchhHHHHHHHHHHHHHHH-HhhCCC----CCCEEEEEecCCCcccCcCCCCCCcCCc-----cEEEecCCCHHHHHH
Q 002045 771 PQFNLWWENAHEQLRAVLLTL-LEELPS----HLPILLLGSSSVPLAEVEGDPSTVFPLR-----SVYQVEKPSTEDRSL 840 (976)
Q Consensus 771 DEid~l~~~~~~~~~~~l~~l-l~~~~~----~~~v~vi~ttn~~~~~Ld~~~~~~~~~r-----~~i~v~~P~~~er~~ 840 (976)
|||+.+....+..+++.|.+- +..+.. ..++-||+||+.....+-. ...|+.. .++.|..|...+|.+
T Consensus 477 dei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~--~~~f~~~L~~~l~~~~i~lPpLreR~~ 554 (686)
T PRK15429 477 DEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVA--DREFRSDLYYRLNVFPIHLPPLRERPE 554 (686)
T ss_pred echhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHH--cCcccHHHHhccCeeEEeCCChhhhHh
Confidence 999999887777765554321 111111 2467899999877433333 4444421 467889999999987
Q ss_pred HHHHHHHHHHhhhhccCCCCC--CCCCCCCCCCCCCCCCCCCchhHHHHHH
Q 002045 841 FLGRLIEAAVSVVLEGRSKKP--QESVSLPELPKVPTVESGPKASELKAKV 889 (976)
Q Consensus 841 i~~~~l~~~~~~~~~~~~~~~--~~~~dl~~La~~~~~~sg~s~aelk~~~ 889 (976)
-+-.++..++.......+... .....+..|... .|+| ...||++++
T Consensus 555 Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y--~WPG-NvrEL~~~i 602 (686)
T PRK15429 555 DIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNM--EWPG-NVRELENVI 602 (686)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC--CCCC-cHHHHHHHH
Confidence 554454443332211111111 122233444433 3555 566777666
No 380
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.56 E-value=1.2e-06 Score=103.25 Aligned_cols=210 Identities=16% Similarity=0.213 Sum_probs=117.8
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcE--EEEE-
Q 002045 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKV--SFYM- 448 (976)
Q Consensus 372 ~~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~--~~~~- 448 (976)
.-.+.+.++|+-...-+++|+.++...+ .+..+.+-+||+||||||||+++++||++++....+. +...
T Consensus 12 ky~P~~~~eLavhkkKv~eV~~wl~~~~--------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~ 83 (519)
T PF03215_consen 12 KYAPKTLDELAVHKKKVEEVRSWLEEMF--------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFR 83 (519)
T ss_pred hcCCCCHHHhhccHHHHHHHHHHHHHHh--------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcc
Confidence 3456788899998888888888876421 1223455788999999999999999999996432111 0000
Q ss_pred -e--cchhHHh------hhHhHHHHHHHHH-HHHHHh-----------cCCcEEEEccccccCCCCCChhhhhHHHHHHH
Q 002045 449 -R--KGADVLS------KWVGEAERQLKLL-FEEAQR-----------NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVST 507 (976)
Q Consensus 449 -~--~~~~l~~------~~~g~~~~~l~~~-f~~a~~-----------~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~ 507 (976)
. ...++.+ .|...... ...+ +..++. ..+.||+|+|+-.++.. . ...+...
T Consensus 84 ~~~~~~~d~~s~~~~~~~f~sq~~~-F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~------~-~~~f~~~ 155 (519)
T PF03215_consen 84 ESDNQEDDFESDFNKFDEFLSQSDK-FSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR------D-TSRFREA 155 (519)
T ss_pred ccccccccccccccccccccchhhh-hccccccccccccccccCCCcCCCceEEEeeccccccch------h-HHHHHHH
Confidence 0 0001110 11111111 1111 111111 23569999999655421 1 1334444
Q ss_pred HHHHhhccCCCC-cEEEEec-C------CCcc--------ccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcC---
Q 002045 508 LLALMDGLDSRG-QVVLIGA-T------NRVD--------AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW--- 568 (976)
Q Consensus 508 Ll~~ld~~~~~~-~vivI~a-t------n~~~--------~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~--- 568 (976)
|..++.. ... .+|||.+ + |... .+++.++...+ ...|.|.+-+..-....|...+...
T Consensus 156 L~~~l~~--~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~-i~~I~FNpIa~T~mkKaL~rI~~~E~~~ 232 (519)
T PF03215_consen 156 LRQYLRS--SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPG-ITRIKFNPIAPTFMKKALKRILKKEARS 232 (519)
T ss_pred HHHHHHc--CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCC-ceEEEecCCCHHHHHHHHHHHHHHHhhh
Confidence 4445542 222 6666665 1 1111 24555554222 3578888877777766666655543
Q ss_pred -----CCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q 002045 569 -----KQPPSRELKSELAASCVGYCGADLKALCTEAAIRAF 604 (976)
Q Consensus 569 -----~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~ 604 (976)
.......+++.|+..+.| ||+.++......+.
T Consensus 233 ~~~~~~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 233 SSGKNKVPDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred hcCCccCCChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 122224457888877665 99998887776666
No 381
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.55 E-value=1.2e-07 Score=113.40 Aligned_cols=127 Identities=15% Similarity=0.141 Sum_probs=78.5
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCC-----------------------CeeecCCcccccCCCCCChHHHHHHHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKF-----------------------PVHSLGLPALLSDPSAKTPEEALVHIFGEA 760 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~-----------------------~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a 760 (976)
..+||+||+|+|||++|+++|+.+.+. .++.++... ...-..++++...+
T Consensus 39 hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas-------~~~vddIr~l~e~~ 111 (563)
T PRK06647 39 NAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGAS-------NTSVQDVRQIKEEI 111 (563)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcc-------cCCHHHHHHHHHHH
Confidence 358999999999999999999987431 111111100 01123555555443
Q ss_pred Hh----cCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHH
Q 002045 761 RR----TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTE 836 (976)
Q Consensus 761 ~~----~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~ 836 (976)
.. ....|++|||+|.+... ..+.|+..|+..+ . .+++|.+|+.+ ..|.+ + +++.-.++.|.+++.+
T Consensus 112 ~~~p~~~~~KVvIIDEa~~Ls~~----a~naLLK~LEepp-~-~~vfI~~tte~-~kL~~--t-I~SRc~~~~f~~l~~~ 181 (563)
T PRK06647 112 MFPPASSRYRVYIIDEVHMLSNS----AFNALLKTIEEPP-P-YIVFIFATTEV-HKLPA--T-IKSRCQHFNFRLLSLE 181 (563)
T ss_pred HhchhcCCCEEEEEEChhhcCHH----HHHHHHHhhccCC-C-CEEEEEecCCh-HHhHH--H-HHHhceEEEecCCCHH
Confidence 32 33469999999998643 3344555565433 3 44444455555 44544 2 2221257889999999
Q ss_pred HHHHHHHHHHH
Q 002045 837 DRSLFLGRLIE 847 (976)
Q Consensus 837 er~~i~~~~l~ 847 (976)
+...+++..+.
T Consensus 182 el~~~L~~i~~ 192 (563)
T PRK06647 182 KIYNMLKKVCL 192 (563)
T ss_pred HHHHHHHHHHH
Confidence 99988887775
No 382
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=9.6e-08 Score=115.04 Aligned_cols=128 Identities=16% Similarity=0.196 Sum_probs=81.6
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCC-----------------------eeecCCcccccCCCCCChHHHHHHHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFP-----------------------VHSLGLPALLSDPSAKTPEEALVHIFGEA 760 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~-----------------------~~~~~~~~l~~~~~~g~~e~~~~~~f~~a 760 (976)
..+||+||+|||||++|+++|+.+.+.. ++.++... ...-..++.+...+
T Consensus 39 hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s-------~~~v~~ir~l~~~~ 111 (576)
T PRK14965 39 HAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGAS-------NTGVDDIRELRENV 111 (576)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccC-------ccCHHHHHHHHHHH
Confidence 3479999999999999999999874321 22222111 11234577777666
Q ss_pred Hhc----CCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHH
Q 002045 761 RRT----TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTE 836 (976)
Q Consensus 761 ~~~----~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~ 836 (976)
... ...|++|||+|.+.... .+.|+..|+..+. .++||.+|+.+ ..|.+ . +++.-.++.|..++..
T Consensus 112 ~~~p~~~~~KVvIIdev~~Lt~~a----~naLLk~LEepp~--~~~fIl~t~~~-~kl~~--t-I~SRc~~~~f~~l~~~ 181 (576)
T PRK14965 112 KYLPSRSRYKIFIIDEVHMLSTNA----FNALLKTLEEPPP--HVKFIFATTEP-HKVPI--T-ILSRCQRFDFRRIPLQ 181 (576)
T ss_pred HhccccCCceEEEEEChhhCCHHH----HHHHHHHHHcCCC--CeEEEEEeCCh-hhhhH--H-HHHhhhhhhcCCCCHH
Confidence 432 22599999999887543 3456667765443 44444455555 45554 2 2221267889999999
Q ss_pred HHHHHHHHHHHH
Q 002045 837 DRSLFLGRLIEA 848 (976)
Q Consensus 837 er~~i~~~~l~~ 848 (976)
+....++.++..
T Consensus 182 ~i~~~L~~i~~~ 193 (576)
T PRK14965 182 KIVDRLRYIADQ 193 (576)
T ss_pred HHHHHHHHHHHH
Confidence 988888877763
No 383
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.54 E-value=1.8e-07 Score=106.64 Aligned_cols=122 Identities=11% Similarity=0.133 Sum_probs=72.6
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCC-C-----eeecCC----cccccCCCC---CCh--HHHHHHHHHHHHhc--CCc
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKF-P-----VHSLGL----PALLSDPSA---KTP--EEALVHIFGEARRT--TPS 766 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~-~-----~~~~~~----~~l~~~~~~---g~~--e~~~~~~f~~a~~~--~p~ 766 (976)
.+++|+||||||||++|+.+|..+.+. . ++.+.. ..++.++.. |-. ...+.+++..|+.. .|+
T Consensus 195 ~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~ 274 (459)
T PRK11331 195 KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKY 274 (459)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCc
Confidence 579999999999999999999986431 1 222221 123322211 100 01234455666653 589
Q ss_pred eEeccccchhHHHHHHHHHHHHHHHHhh--------------------CCCCCCEEEEEecCCCcc----cCcCCCCCCc
Q 002045 767 ILYIPQFNLWWENAHEQLRAVLLTLLEE--------------------LPSHLPILLLGSSSVPLA----EVEGDPSTVF 822 (976)
Q Consensus 767 ilfiDEid~l~~~~~~~~~~~l~~ll~~--------------------~~~~~~v~vi~ttn~~~~----~Ld~~~~~~~ 822 (976)
|||||||+.... .++...+.++|+. +.--.++.||||.|.. + .||. |.+|
T Consensus 275 vliIDEINRani---~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~-Drs~~~lD~--AlrR 348 (459)
T PRK11331 275 VFIIDEINRANL---SKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTA-DRSLAVVDY--ALRR 348 (459)
T ss_pred EEEEehhhccCH---HHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCcc-ccchhhccH--HHHh
Confidence 999999998542 3344444555541 0112479999999988 4 4665 7777
Q ss_pred CCccEEEecC
Q 002045 823 PLRSVYQVEK 832 (976)
Q Consensus 823 ~~r~~i~v~~ 832 (976)
++. .+++.+
T Consensus 349 RF~-fi~i~p 357 (459)
T PRK11331 349 RFS-FIDIEP 357 (459)
T ss_pred hhh-eEEecC
Confidence 754 344543
No 384
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=1.2e-07 Score=111.40 Aligned_cols=134 Identities=17% Similarity=0.275 Sum_probs=80.7
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeee------------cCC---ccccc-CCCCCChHHHHHHHHHHHHh----cC
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHS------------LGL---PALLS-DPSAKTPEEALVHIFGEARR----TT 764 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~------------~~~---~~l~~-~~~~g~~e~~~~~~f~~a~~----~~ 764 (976)
.+||+||+|+|||++|+++|..+.+.+-.. +.. ++++. .......-..++.+...+.. ..
T Consensus 40 ayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~ 119 (486)
T PRK14953 40 AYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGK 119 (486)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCC
Confidence 478999999999999999999874311000 000 11110 00001112345666555543 23
Q ss_pred CceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHH
Q 002045 765 PSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGR 844 (976)
Q Consensus 765 p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~ 844 (976)
..|++|||+|.+.... .+.|+..|+..+ ...++|++|++ + +.|.+ +.+.+ ..++.|.+|+..+...+++.
T Consensus 120 ~KVvIIDEad~Lt~~a----~naLLk~LEepp-~~~v~Il~tt~-~-~kl~~--tI~SR-c~~i~f~~ls~~el~~~L~~ 189 (486)
T PRK14953 120 YKVYIIDEAHMLTKEA----FNALLKTLEEPP-PRTIFILCTTE-Y-DKIPP--TILSR-CQRFIFSKPTKEQIKEYLKR 189 (486)
T ss_pred eeEEEEEChhhcCHHH----HHHHHHHHhcCC-CCeEEEEEECC-H-HHHHH--HHHHh-ceEEEcCCCCHHHHHHHHHH
Confidence 4699999999886433 345666666543 34566666654 4 34444 22222 25788999999999999998
Q ss_pred HHHH
Q 002045 845 LIEA 848 (976)
Q Consensus 845 ~l~~ 848 (976)
++..
T Consensus 190 i~k~ 193 (486)
T PRK14953 190 ICNE 193 (486)
T ss_pred HHHH
Confidence 8873
No 385
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.54 E-value=7.6e-07 Score=99.10 Aligned_cols=56 Identities=23% Similarity=0.305 Sum_probs=44.4
Q ss_pred CCcc-cccChHHHHHHHHHHHHcccCChhHHhhcCC-CCCceEEEEcCCCChHHHHHHHHHHHHhh
Q 002045 376 VSFD-DIGGLSEYIDALKEMVFFPLLYPDFFASYHI-TPPRGVLLCGPPGTGKTLIARALACAASK 439 (976)
Q Consensus 376 ~~~~-~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~-~~~~~vLL~GppGtGKT~laralA~~l~~ 439 (976)
.-|+ ++.|+++++.+|.+++.... .|. ...+.++|+||||||||++|++||+.+..
T Consensus 47 ~~F~~~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 47 RFFDHDFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred cccchhccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3466 79999999999988775421 222 34567899999999999999999999965
No 386
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.54 E-value=1.2e-07 Score=112.45 Aligned_cols=142 Identities=15% Similarity=0.188 Sum_probs=89.4
Q ss_pred ceeeccCCCCcHhhHHHHHHHhh--cCCCeeecCCccccc--------CCCCCChHH----HHHHHHHHHHhcCCceEec
Q 002045 705 RLLLCGSEGTGVDHLGPAILHEL--EKFPVHSLGLPALLS--------DPSAKTPEE----ALVHIFGEARRTTPSILYI 770 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l--~~~~~~~~~~~~l~~--------~~~~g~~e~----~~~~~f~~a~~~~p~ilfi 770 (976)
.|||+|++||||+++|++|.+.. ...||+.++|..+-. +|..|.... .-..+|+.| ..+.|||
T Consensus 237 pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfL 313 (526)
T TIGR02329 237 TVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAA---HRGTLFL 313 (526)
T ss_pred cEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcccccccccccccccchhhc---CCceEEe
Confidence 59999999999999999999764 346999999875421 111111100 011244444 3468999
Q ss_pred cccchhHHHHHHHHHHHHHHH-HhhCCC----CCCEEEEEecCCCcccCcCCCCCCcCC----c-cEEEecCCCHHHHHH
Q 002045 771 PQFNLWWENAHEQLRAVLLTL-LEELPS----HLPILLLGSSSVPLAEVEGDPSTVFPL----R-SVYQVEKPSTEDRSL 840 (976)
Q Consensus 771 DEid~l~~~~~~~~~~~l~~l-l~~~~~----~~~v~vi~ttn~~~~~Ld~~~~~~~~~----r-~~i~v~~P~~~er~~ 840 (976)
|||+.|....+..+++.|..- +..+.+ ..+|-||+||+.....+-. ...|+. + .++.+..|...+|.+
T Consensus 314 deI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~--~g~fr~dL~~rL~~~~I~lPPLReR~e 391 (526)
T TIGR02329 314 DEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQ--QGRFRRDLFYRLSILRIALPPLRERPG 391 (526)
T ss_pred cChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhh--hcchhHHHHHhcCCcEEeCCCchhchh
Confidence 999999988887766554220 111111 2345789999877443333 444442 2 467889999999887
Q ss_pred HHHHHHHHHHh
Q 002045 841 FLGRLIEAAVS 851 (976)
Q Consensus 841 i~~~~l~~~~~ 851 (976)
-+..++..++.
T Consensus 392 DI~~L~~~fl~ 402 (526)
T TIGR02329 392 DILPLAAEYLV 402 (526)
T ss_pred HHHHHHHHHHH
Confidence 65555554443
No 387
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.52 E-value=4.9e-08 Score=95.71 Aligned_cols=99 Identities=23% Similarity=0.242 Sum_probs=59.9
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcc------cccCCCC--CChHHHHHHHHHHHHhcCCceEeccccchh
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPA------LLSDPSA--KTPEEALVHIFGEARRTTPSILYIPQFNLW 776 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~------l~~~~~~--g~~e~~~~~~f~~a~~~~p~ilfiDEid~l 776 (976)
+|||+||||||||++|+.+|+.+ +.+++.+.++. |+..|.. +..+-.-..+...++ .++|||||||+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~-~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL-GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRA 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH-TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG-
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-hcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccC
Confidence 38999999999999999999998 77887776543 2222211 110000000111111 4689999999985
Q ss_pred HHHHHHHHHHHHHHHHhhC----CC-------CC------CEEEEEecCCC
Q 002045 777 WENAHEQLRAVLLTLLEEL----PS-------HL------PILLLGSSSVP 810 (976)
Q Consensus 777 ~~~~~~~~~~~l~~ll~~~----~~-------~~------~v~vi~ttn~~ 810 (976)
. ..+...|+.+|+.- .. .. ++.||||+|..
T Consensus 78 ~----~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~ 124 (139)
T PF07728_consen 78 P----PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPR 124 (139)
T ss_dssp -----HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSS
T ss_pred C----HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCC
Confidence 5 45566677777642 11 11 38899999977
No 388
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.52 E-value=2e-07 Score=94.31 Aligned_cols=115 Identities=21% Similarity=0.237 Sum_probs=69.1
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcccccC--------CCCCC---hHHHHHHHHHHHHhcCCceEec
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSD--------PSAKT---PEEALVHIFGEARRTTPSILYI 770 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~~--------~~~g~---~e~~~~~~f~~a~~~~p~ilfi 770 (976)
..|||+|++||||+++|++|.+... ..||+.++|+.+-.. +..|. ....-..+|..| ..++|||
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A---~~GtL~L 99 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQA---NGGTLFL 99 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHT---TTSEEEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeec---cceEEee
Confidence 3599999999999999999999743 369999999754211 00010 000111344444 4469999
Q ss_pred cccchhHHHHHHHHHHHHHHH-HhhCCC----CCCEEEEEecCCCcccCcCCCCCCcC
Q 002045 771 PQFNLWWENAHEQLRAVLLTL-LEELPS----HLPILLLGSSSVPLAEVEGDPSTVFP 823 (976)
Q Consensus 771 DEid~l~~~~~~~~~~~l~~l-l~~~~~----~~~v~vi~ttn~~~~~Ld~~~~~~~~ 823 (976)
|||+.|....+.++++.|..- +..+.. ..++.||+||+.+...+-. ...|+
T Consensus 100 d~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~l~~~v~--~g~fr 155 (168)
T PF00158_consen 100 DEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKDLEELVE--QGRFR 155 (168)
T ss_dssp ETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-HHHHHH--TTSS-
T ss_pred cchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcCHHHHHH--cCCCh
Confidence 999999998888865554321 111111 3489999999987444433 55665
No 389
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.50 E-value=2.4e-07 Score=110.62 Aligned_cols=140 Identities=20% Similarity=0.213 Sum_probs=87.2
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCccccc--------CCCCCChH---HHHHHHHHHHHhcCCceEecc
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLS--------DPSAKTPE---EALVHIFGEARRTTPSILYIP 771 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~--------~~~~g~~e---~~~~~~f~~a~~~~p~ilfiD 771 (976)
.+||+|++||||+++|++|..... ..||+.++|+.+-. ++..|... +....+|+.| ..+.||||
T Consensus 229 pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~Ld 305 (520)
T PRK10820 229 PLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLD 305 (520)
T ss_pred CEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEe
Confidence 499999999999999999877532 35899999876421 11011100 0111234433 35789999
Q ss_pred ccchhHHHHHHHHHHHHHHH-HhhCCC----CCCEEEEEecCCCcccCcCCCCCCcCC----c-cEEEecCCCHHHHHHH
Q 002045 772 QFNLWWENAHEQLRAVLLTL-LEELPS----HLPILLLGSSSVPLAEVEGDPSTVFPL----R-SVYQVEKPSTEDRSLF 841 (976)
Q Consensus 772 Eid~l~~~~~~~~~~~l~~l-l~~~~~----~~~v~vi~ttn~~~~~Ld~~~~~~~~~----r-~~i~v~~P~~~er~~i 841 (976)
||+.|....+..+++.|..- +..+.. ..++.||+||+.+...|.. ...|+. + .++.+..|...+|.+-
T Consensus 306 eI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~--~g~f~~dL~~rL~~~~i~lPpLreR~~D 383 (520)
T PRK10820 306 EIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQ--KGEFREDLYYRLNVLTLNLPPLRDRPQD 383 (520)
T ss_pred ChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHH--cCCccHHHHhhcCeeEEeCCCcccChhH
Confidence 99999887777655544221 111111 2367889999887544443 344442 2 5788999999998865
Q ss_pred HHHHHHHH
Q 002045 842 LGRLIEAA 849 (976)
Q Consensus 842 ~~~~l~~~ 849 (976)
+..++..+
T Consensus 384 i~~L~~~f 391 (520)
T PRK10820 384 IMPLTELF 391 (520)
T ss_pred HHHHHHHH
Confidence 55544443
No 390
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.50 E-value=1.8e-07 Score=110.83 Aligned_cols=141 Identities=17% Similarity=0.194 Sum_probs=89.1
Q ss_pred ceeeccCCCCcHhhHHHHHHHh--------h--cCCCeeecCCccccc--------CCCCCChHHH----HHHHHHHHHh
Q 002045 705 RLLLCGSEGTGVDHLGPAILHE--------L--EKFPVHSLGLPALLS--------DPSAKTPEEA----LVHIFGEARR 762 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~--------l--~~~~~~~~~~~~l~~--------~~~~g~~e~~----~~~~f~~a~~ 762 (976)
.|||+|++||||+++|++|.+. . ...||+.++|+.+-. +|..|..... -..+|+.|
T Consensus 244 pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A-- 321 (538)
T PRK15424 244 AVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA-- 321 (538)
T ss_pred cEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCCccccccCccccccCCchhcc--
Confidence 5999999999999999999886 2 246999999875421 1111110000 11244444
Q ss_pred cCCceEeccccchhHHHHHHHHHHHHHHH-HhhCCC----CCCEEEEEecCCCcccCcCCCCCCcCCc-----cEEEecC
Q 002045 763 TTPSILYIPQFNLWWENAHEQLRAVLLTL-LEELPS----HLPILLLGSSSVPLAEVEGDPSTVFPLR-----SVYQVEK 832 (976)
Q Consensus 763 ~~p~ilfiDEid~l~~~~~~~~~~~l~~l-l~~~~~----~~~v~vi~ttn~~~~~Ld~~~~~~~~~r-----~~i~v~~ 832 (976)
..+.||||||+.|....+..+++.|..- +..+.+ ..+|-||+|||.....+-. .+.|+.. .++.+.+
T Consensus 322 -~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~--~g~Fr~dL~yrL~~~~I~l 398 (538)
T PRK15424 322 -HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVR--QGRFRRDLFYRLSILRLQL 398 (538)
T ss_pred -CCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCHHHHHh--cccchHHHHHHhcCCeecC
Confidence 3468999999999988777765544210 111111 2356899999877443333 4445522 5678899
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 002045 833 PSTEDRSLFLGRLIEAAV 850 (976)
Q Consensus 833 P~~~er~~i~~~~l~~~~ 850 (976)
|...+|.+-+..++..++
T Consensus 399 PPLReR~eDI~~L~~~fl 416 (538)
T PRK15424 399 PPLRERVADILPLAESFL 416 (538)
T ss_pred CChhhchhHHHHHHHHHH
Confidence 999998875555555444
No 391
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.50 E-value=3e-07 Score=109.79 Aligned_cols=140 Identities=18% Similarity=0.151 Sum_probs=87.1
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcccccCC----CCCCh----HHH---HHHHHHHHHhcCCceEecc
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDP----SAKTP----EEA---LVHIFGEARRTTPSILYIP 771 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~~~----~~g~~----e~~---~~~~f~~a~~~~p~ilfiD 771 (976)
.|||+|++||||+++|++|..... +.+|+.++|..+-... +.|.. ... ....|.. ...+.||||
T Consensus 212 pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~---a~gGtL~ld 288 (509)
T PRK05022 212 NVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFEL---ADGGTLFLD 288 (509)
T ss_pred cEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCccccccCCCcccCCcchhh---cCCCEEEec
Confidence 599999999999999999998742 3589999987652110 00100 000 0112333 345789999
Q ss_pred ccchhHHHHHHHHHHHHHHH-HhhCCC----CCCEEEEEecCCCcccCcCCCCCCcCCc-----cEEEecCCCHHHHHHH
Q 002045 772 QFNLWWENAHEQLRAVLLTL-LEELPS----HLPILLLGSSSVPLAEVEGDPSTVFPLR-----SVYQVEKPSTEDRSLF 841 (976)
Q Consensus 772 Eid~l~~~~~~~~~~~l~~l-l~~~~~----~~~v~vi~ttn~~~~~Ld~~~~~~~~~r-----~~i~v~~P~~~er~~i 841 (976)
||+.|....+..+++.|..- +..+.+ ...+-||+||+.....+-. ...|+.. .++.|..|...+|.+-
T Consensus 289 eI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~--~~~f~~dL~~rl~~~~i~lPpLreR~eD 366 (509)
T PRK05022 289 EIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVR--AGRFRADLYHRLSVFPLSVPPLRERGDD 366 (509)
T ss_pred ChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHH--cCCccHHHHhcccccEeeCCCchhchhh
Confidence 99999987777765544211 011111 2367899999977433332 4444432 4777899999998764
Q ss_pred HHHHHHHH
Q 002045 842 LGRLIEAA 849 (976)
Q Consensus 842 ~~~~l~~~ 849 (976)
+..++..+
T Consensus 367 I~~L~~~f 374 (509)
T PRK05022 367 VLLLAGYF 374 (509)
T ss_pred HHHHHHHH
Confidence 44444433
No 392
>PRK12377 putative replication protein; Provisional
Probab=98.50 E-value=8.3e-07 Score=95.21 Aligned_cols=103 Identities=20% Similarity=0.219 Sum_probs=62.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhHhHHH--HHHHHHHHHHHhcCCcEEEEccccccC
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAE--RQLKLLFEEAQRNQPSIIFFDEIDGLA 490 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~g~~~--~~l~~~f~~a~~~~p~VL~iDEid~L~ 490 (976)
..+++|+||||||||+||.+||+.+...+..+.| ++..+++........ .....++... ....+|+|||+....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~--i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~ 176 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIV--VTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQR 176 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEE--EEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC
Confidence 3689999999999999999999999877766544 445566554322110 0112233332 345699999996553
Q ss_pred CCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCC
Q 002045 491 PVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (976)
Q Consensus 491 ~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~ 529 (976)
. .......|+.+++.-... ...+|.|||.
T Consensus 177 ~---------s~~~~~~l~~ii~~R~~~-~~ptiitSNl 205 (248)
T PRK12377 177 E---------TKNEQVVLNQIIDRRTAS-MRSVGMLTNL 205 (248)
T ss_pred C---------CHHHHHHHHHHHHHHHhc-CCCEEEEcCC
Confidence 1 122334555666543322 2334556775
No 393
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=5.3e-07 Score=100.84 Aligned_cols=136 Identities=20% Similarity=0.251 Sum_probs=91.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcC--------------------CcEEEEEecchhHHhhhHh-----HHHHH
Q 002045 411 TPPRGVLLCGPPGTGKTLIARALACAASKAG--------------------QKVSFYMRKGADVLSKWVG-----EAERQ 465 (976)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~--------------------~~~~~~~~~~~~l~~~~~g-----~~~~~ 465 (976)
+.+..+||+||+|+|||++|+++|+.+.... .+..|+.+....-. ...| -.-..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHH
Confidence 5567899999999999999999999985421 11223333321100 0001 12334
Q ss_pred HHHHHHHHHh----cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCccccchhhcCCC
Q 002045 466 LKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPG 541 (976)
Q Consensus 466 l~~~f~~a~~----~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~aL~r~g 541 (976)
++.+.+.+.. ...-|++||+++.| .....+.|+..|+... ..+.+|.+|+.+..+.+.+++
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~L-----------d~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S-- 162 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESM-----------NLQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS-- 162 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhC-----------CHHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH--
Confidence 5555555543 33459999999988 3456677888888653 346666688888899999988
Q ss_pred CCccccCCCCCCHHHHHHHHHH
Q 002045 542 RFDREFNFPLPGCEARAEILDI 563 (976)
Q Consensus 542 Rf~~~i~~~~P~~~er~~Il~~ 563 (976)
|+ ..+.|++|+.++..+.|..
T Consensus 163 Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hh-hhhcCCCCCHHHHHHHHHh
Confidence 55 7899999999988877754
No 394
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=1.5e-07 Score=112.17 Aligned_cols=133 Identities=17% Similarity=0.245 Sum_probs=80.7
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeeec-CC--------------ccccc-CCCCCChHHHHHHHHHHHHhc----C
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSL-GL--------------PALLS-DPSAKTPEEALVHIFGEARRT----T 764 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~-~~--------------~~l~~-~~~~g~~e~~~~~~f~~a~~~----~ 764 (976)
.+||+||||||||++|+++|+.+..-.-... .+ ++++- .......-..++.+...+... .
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~ 119 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGR 119 (527)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCC
Confidence 4799999999999999999998743111100 00 01100 000012234577777766432 2
Q ss_pred CceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHH
Q 002045 765 PSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGR 844 (976)
Q Consensus 765 p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~ 844 (976)
..|+||||+|.+.... .+.|+..|+..+. ..+||++| +.+ ..+.+ . +.+.-.+++|..++.++....++.
T Consensus 120 ~kVvIIDEad~ls~~a----~naLLK~LEepp~-~~~fIL~t-~d~-~kil~--t-I~SRc~~~~f~~l~~~~i~~~L~~ 189 (527)
T PRK14969 120 FKVYIIDEVHMLSKSA----FNAMLKTLEEPPE-HVKFILAT-TDP-QKIPV--T-VLSRCLQFNLKQMPPPLIVSHLQH 189 (527)
T ss_pred ceEEEEcCcccCCHHH----HHHHHHHHhCCCC-CEEEEEEe-CCh-hhCch--h-HHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3599999999886533 3456666665433 33444444 445 34443 2 233126888999999999988888
Q ss_pred HHH
Q 002045 845 LIE 847 (976)
Q Consensus 845 ~l~ 847 (976)
++.
T Consensus 190 il~ 192 (527)
T PRK14969 190 ILE 192 (527)
T ss_pred HHH
Confidence 876
No 395
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.49 E-value=1.6e-07 Score=105.56 Aligned_cols=140 Identities=18% Similarity=0.174 Sum_probs=85.1
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcccccC----CCCCChH-------HHHHHHHHHHHhcCCceEecc
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSD----PSAKTPE-------EALVHIFGEARRTTPSILYIP 771 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~~----~~~g~~e-------~~~~~~f~~a~~~~p~ilfiD 771 (976)
.|||+|++||||+++|++|..... +.||+.++|..+-.. ...|... ......|.. ...+.||||
T Consensus 31 pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~---a~gGtL~l~ 107 (326)
T PRK11608 31 PVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLD 107 (326)
T ss_pred CEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhc---cCCCeEEeC
Confidence 499999999999999999987643 468999998764211 0001000 000112332 345789999
Q ss_pred ccchhHHHHHHHHHHHHHHH-HhhCCC----CCCEEEEEecCCCcccCcCCCCCCcCC----c-cEEEecCCCHHHHHHH
Q 002045 772 QFNLWWENAHEQLRAVLLTL-LEELPS----HLPILLLGSSSVPLAEVEGDPSTVFPL----R-SVYQVEKPSTEDRSLF 841 (976)
Q Consensus 772 Eid~l~~~~~~~~~~~l~~l-l~~~~~----~~~v~vi~ttn~~~~~Ld~~~~~~~~~----r-~~i~v~~P~~~er~~i 841 (976)
||+.|....+..+.+.|..- +..+.. ...+.||+||+.....+.. ...|+. + .++.|..|...+|.+-
T Consensus 108 ~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~--~g~f~~dL~~~l~~~~i~lPpLReR~eD 185 (326)
T PRK11608 108 ELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVA--EGKFRADLLDRLAFDVVQLPPLRERQSD 185 (326)
T ss_pred ChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHH--cCCchHHHHHhcCCCEEECCChhhhhhh
Confidence 99999987777765544221 000111 2358889998876333333 333322 2 3567889999998765
Q ss_pred HHHHHHHH
Q 002045 842 LGRLIEAA 849 (976)
Q Consensus 842 ~~~~l~~~ 849 (976)
+..++..+
T Consensus 186 I~~L~~~f 193 (326)
T PRK11608 186 IMLMAEHF 193 (326)
T ss_pred HHHHHHHH
Confidence 55555443
No 396
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.48 E-value=2.9e-07 Score=113.34 Aligned_cols=141 Identities=20% Similarity=0.283 Sum_probs=87.5
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCccccc--------CCCCCChHHHHHHHHHHHHhcCCceEeccccc
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLS--------DPSAKTPEEALVHIFGEARRTTPSILYIPQFN 774 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~--------~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid 774 (976)
.|||+|++||||+++|++|.+... ..||+.++|..+-. ++..|.........|.. ...++||||||+
T Consensus 350 pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~ 426 (638)
T PRK11388 350 PVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVE 426 (638)
T ss_pred CEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChh
Confidence 499999999999999999998743 36899999865421 11001100000112322 346799999999
Q ss_pred hhHHHHHHHHHHHHHHH-HhhCCC----CCCEEEEEecCCCcccCcCCCCCCcCCc-----cEEEecCCCHHHHHHHHHH
Q 002045 775 LWWENAHEQLRAVLLTL-LEELPS----HLPILLLGSSSVPLAEVEGDPSTVFPLR-----SVYQVEKPSTEDRSLFLGR 844 (976)
Q Consensus 775 ~l~~~~~~~~~~~l~~l-l~~~~~----~~~v~vi~ttn~~~~~Ld~~~~~~~~~r-----~~i~v~~P~~~er~~i~~~ 844 (976)
.|....+..++..|..- +..+.+ ..++.||+||+.....+-. ...|+.. ..+.|.+|...+|.+-+..
T Consensus 427 ~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~--~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~ 504 (638)
T PRK11388 427 YLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVE--QNRFSRQLYYALHAFEITIPPLRMRREDIPA 504 (638)
T ss_pred hCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHh--cCCChHHHhhhhceeEEeCCChhhhhhHHHH
Confidence 99988777765554211 111111 1257799999977433333 3444422 4788999999999765555
Q ss_pred HHHHHH
Q 002045 845 LIEAAV 850 (976)
Q Consensus 845 ~l~~~~ 850 (976)
++..++
T Consensus 505 L~~~~l 510 (638)
T PRK11388 505 LVNNKL 510 (638)
T ss_pred HHHHHH
Confidence 554443
No 397
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.47 E-value=1.8e-07 Score=112.65 Aligned_cols=177 Identities=19% Similarity=0.173 Sum_probs=97.4
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcccccCC----CCCChH----HHH---HHHHHHHHhcCCceEecc
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDP----SAKTPE----EAL---VHIFGEARRTTPSILYIP 771 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~~~----~~g~~e----~~~---~~~f~~a~~~~p~ilfiD 771 (976)
.|||+|++||||+++|++|++... +.+|+.++|..+-... ..|... .+. ...|. ....++||||
T Consensus 221 pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~GtL~ld 297 (534)
T TIGR01817 221 TVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFE---LADGGTLFLD 297 (534)
T ss_pred CEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHcCCCCCccCCCCcCCCCccc---ccCCCeEEEe
Confidence 499999999999999999998742 4699999987652110 001000 000 01122 2345799999
Q ss_pred ccchhHHHHHHHHHHHHHHH-HhhCCC----CCCEEEEEecCCCcccCcCCCCCCcCCc-----cEEEecCCCHHHHHHH
Q 002045 772 QFNLWWENAHEQLRAVLLTL-LEELPS----HLPILLLGSSSVPLAEVEGDPSTVFPLR-----SVYQVEKPSTEDRSLF 841 (976)
Q Consensus 772 Eid~l~~~~~~~~~~~l~~l-l~~~~~----~~~v~vi~ttn~~~~~Ld~~~~~~~~~r-----~~i~v~~P~~~er~~i 841 (976)
||+.|....+..++..|..- +..+.+ ..++.||+||+.....+-. ...|+.. .++.|.+|...+|.+-
T Consensus 298 ei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~--~~~f~~~L~~rl~~~~i~lPpLreR~eD 375 (534)
T TIGR01817 298 EIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVA--KGEFRADLYYRINVVPIFLPPLRERRED 375 (534)
T ss_pred chhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHHH--cCCCCHHHHHHhcCCeeeCCCccccccc
Confidence 99999887777755544221 011111 1357889998877433332 4444322 3666788888777554
Q ss_pred HHHHHHHHHhhhhccCCCC-CCCCCCCCCCCCCCCCCCCCchhHHHHHH
Q 002045 842 LGRLIEAAVSVVLEGRSKK-PQESVSLPELPKVPTVESGPKASELKAKV 889 (976)
Q Consensus 842 ~~~~l~~~~~~~~~~~~~~-~~~~~dl~~La~~~~~~sg~s~aelk~~~ 889 (976)
+..++..++.......+.. ......+..|.... |+| ...||++++
T Consensus 376 i~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~--WPG-NvrEL~~v~ 421 (534)
T TIGR01817 376 IPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCK--WPG-NVRELENCL 421 (534)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCC--CCC-hHHHHHHHH
Confidence 4333333322211111111 12222333344332 555 567777766
No 398
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=3.3e-07 Score=110.11 Aligned_cols=132 Identities=10% Similarity=0.138 Sum_probs=79.3
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeee---------cCC--------------cccccCCCCCC---hHHHHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHS---------LGL--------------PALLSDPSAKT---PEEALVHIF 757 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~---------~~~--------------~~l~~~~~~g~---~e~~~~~~f 757 (976)
..+||+||+|||||++|+++|+.+....... -.| .++. . +.|. .-..++.+.
T Consensus 39 ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~-~-~d~~s~~~vd~Ir~l~ 116 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNIS-E-FDAASNNSVDDIRQLR 116 (620)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeE-E-ecccccCCHHHHHHHH
Confidence 3599999999999999999999974421100 000 0000 0 0111 134566665
Q ss_pred HHHHh----cCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCC
Q 002045 758 GEARR----TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKP 833 (976)
Q Consensus 758 ~~a~~----~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P 833 (976)
..+.. ...-|++|||+|.+.... .+.|+..|+..+. ..+||++|++ + ..|.+ . +.+.-.+++|..+
T Consensus 117 e~~~~~P~~~~~KVvIIdEad~Lt~~a----~naLLK~LEePp~-~tv~IL~t~~-~-~kLl~--T-I~SRc~~vef~~l 186 (620)
T PRK14954 117 ENVRYGPQKGRYRVYIIDEVHMLSTAA----FNAFLKTLEEPPP-HAIFIFATTE-L-HKIPA--T-IASRCQRFNFKRI 186 (620)
T ss_pred HHHHhhhhcCCCEEEEEeChhhcCHHH----HHHHHHHHhCCCC-CeEEEEEeCC-h-hhhhH--H-HHhhceEEecCCC
Confidence 55422 223599999999986533 3456666766553 3455555544 4 33332 2 2332378999999
Q ss_pred CHHHHHHHHHHHHH
Q 002045 834 STEDRSLFLGRLIE 847 (976)
Q Consensus 834 ~~~er~~i~~~~l~ 847 (976)
+..+....++..+.
T Consensus 187 ~~~ei~~~L~~i~~ 200 (620)
T PRK14954 187 PLDEIQSQLQMICR 200 (620)
T ss_pred CHHHHHHHHHHHHH
Confidence 99998888877766
No 399
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.47 E-value=4.2e-07 Score=107.24 Aligned_cols=195 Identities=20% Similarity=0.204 Sum_probs=115.7
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHh
Q 002045 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS 456 (976)
Q Consensus 377 ~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~ 456 (976)
.+..++|.......+...+.. + .....+++|+|++||||+++|+++....... ..+|+.++|..+..
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~----------~-a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~--~~~~v~v~c~~~~~ 203 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEK----------I-APSDITVLLLGESGTGKEVLARALHQLSDRK--DKRFVAINCAAIPE 203 (445)
T ss_pred cccceeecCHHHHHHHHHHHH----------H-hCCCCCEEEECCCCcCHHHHHHHHHHhCCcC--CCCeEEEECCCCCh
Confidence 345677877776666655432 1 1334679999999999999999999775432 35688888876543
Q ss_pred hhHhHH-----H-------HHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC-----C--
Q 002045 457 KWVGEA-----E-------RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-----S-- 517 (976)
Q Consensus 457 ~~~g~~-----~-------~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~-----~-- 517 (976)
..+... . ......|.. ....+||||||+.|. ..++..|+.+++.-. .
T Consensus 204 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~~i~~l~-----------~~~q~~l~~~l~~~~~~~~~~~~ 269 (445)
T TIGR02915 204 NLLESELFGYEKGAFTGAVKQTLGKIEY---AHGGTLFLDEIGDLP-----------LNLQAKLLRFLQERVIERLGGRE 269 (445)
T ss_pred HHHHHHhcCCCCCCcCCCccCCCCceeE---CCCCEEEEechhhCC-----------HHHHHHHHHHHhhCeEEeCCCCc
Confidence 222110 0 000011122 224599999999884 456677777775321 0
Q ss_pred --CCcEEEEecCCCcc-------ccchhhcCCCCCccccCCCCCCHHHHHH----HHHHHHhc----CC---CCCCHHHH
Q 002045 518 --RGQVVLIGATNRVD-------AIDGALRRPGRFDREFNFPLPGCEARAE----ILDIHTRK----WK---QPPSRELK 577 (976)
Q Consensus 518 --~~~vivI~atn~~~-------~ld~aL~r~gRf~~~i~~~~P~~~er~~----Il~~~l~~----~~---~~~~~~~l 577 (976)
..++.||++|+..- .+.+.|.. |+ ..+.+..|...+|.+ ++..++.. .+ ..++.+.+
T Consensus 270 ~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~ 346 (445)
T TIGR02915 270 EIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RI-AEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDAL 346 (445)
T ss_pred eeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hh-ccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 12567777776631 12232322 33 234455555555543 44444332 22 35678888
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHH
Q 002045 578 SELAASCVGYCGADLKALCTEAAI 601 (976)
Q Consensus 578 ~~lA~~t~G~s~~dI~~l~~~A~~ 601 (976)
..|..+.=--+.++|++++..|+.
T Consensus 347 ~~L~~~~wpgNvreL~~~i~~a~~ 370 (445)
T TIGR02915 347 RALEAHAWPGNVRELENKVKRAVI 370 (445)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHH
Confidence 888776655567899999988774
No 400
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=3.6e-07 Score=109.69 Aligned_cols=135 Identities=16% Similarity=0.208 Sum_probs=82.6
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCe-ee----cC-------C--------ccccc-CCCCCChHHHHHHHHHHHHh
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPV-HS----LG-------L--------PALLS-DPSAKTPEEALVHIFGEARR 762 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~-~~----~~-------~--------~~l~~-~~~~g~~e~~~~~~f~~a~~ 762 (976)
..+||+||+|+|||++|+++|+.+..... .. ++ | ++++. .......-..++.++..++.
T Consensus 47 ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~ 126 (598)
T PRK09111 47 QAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRY 126 (598)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHh
Confidence 46999999999999999999998743210 00 00 0 01110 00000113457777776653
Q ss_pred c----CCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHH
Q 002045 763 T----TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDR 838 (976)
Q Consensus 763 ~----~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er 838 (976)
. ...|++|||+|.+... ..+.|+..|+..+. ..+||++| +.+ +.+.+ . +++.-.+|.|..|+.++.
T Consensus 127 ~P~~a~~KVvIIDEad~Ls~~----a~naLLKtLEePp~-~~~fIl~t-te~-~kll~--t-I~SRcq~~~f~~l~~~el 196 (598)
T PRK09111 127 RPVSARYKVYIIDEVHMLSTA----AFNALLKTLEEPPP-HVKFIFAT-TEI-RKVPV--T-VLSRCQRFDLRRIEADVL 196 (598)
T ss_pred chhcCCcEEEEEEChHhCCHH----HHHHHHHHHHhCCC-CeEEEEEe-CCh-hhhhH--H-HHhheeEEEecCCCHHHH
Confidence 2 2469999999998643 34556666766543 34455545 444 33443 2 233126888999999999
Q ss_pred HHHHHHHHHH
Q 002045 839 SLFLGRLIEA 848 (976)
Q Consensus 839 ~~i~~~~l~~ 848 (976)
..+++..+.+
T Consensus 197 ~~~L~~i~~k 206 (598)
T PRK09111 197 AAHLSRIAAK 206 (598)
T ss_pred HHHHHHHHHH
Confidence 9999888763
No 401
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.46 E-value=1.5e-06 Score=91.19 Aligned_cols=160 Identities=21% Similarity=0.266 Sum_probs=107.3
Q ss_pred cCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcC-
Q 002045 651 SRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEK- 729 (976)
Q Consensus 651 ~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~- 729 (976)
...+.++.+-|++.+.+.++....... + | .| ..++||+|+.|||||.+++++..++..
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl----------~------G--~p---annvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFL----------Q------G--LP---ANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHH----------c------C--CC---CcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 345566777777777777766532211 0 1 11 347999999999999999999997543
Q ss_pred -CCeeecCCcccccCCCCCChHHHHHHHHHHHHh-cCCceEeccccchhHHHHHHHHHHHHHHHHhhC-C-CCCCEEEEE
Q 002045 730 -FPVHSLGLPALLSDPSAKTPEEALVHIFGEARR-TTPSILYIPQFNLWWENAHEQLRAVLLTLLEEL-P-SHLPILLLG 805 (976)
Q Consensus 730 -~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~-~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~-~-~~~~v~vi~ 805 (976)
+.+|.|....|. .+-.++...+. ...-|||+|++- +. ..+.-...|.++|++- + .-.+|+|.|
T Consensus 80 GLRlIev~k~~L~----------~l~~l~~~l~~~~~kFIlf~DDLs--Fe-~~d~~yk~LKs~LeGgle~~P~NvliyA 146 (249)
T PF05673_consen 80 GLRLIEVSKEDLG----------DLPELLDLLRDRPYKFILFCDDLS--FE-EGDTEYKALKSVLEGGLEARPDNVLIYA 146 (249)
T ss_pred CceEEEECHHHhc----------cHHHHHHHHhcCCCCEEEEecCCC--CC-CCcHHHHHHHHHhcCccccCCCcEEEEE
Confidence 556666544333 35556665553 234699999754 32 3344456788888763 2 256899999
Q ss_pred ecCCCcccCcC---C--------------------CCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 806 SSSVPLAEVEG---D--------------------PSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 806 ttn~~~~~Ld~---~--------------------~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
|+|+- ..+++ . ++-+|- .++.|.+|+.++-.+|.+.++.
T Consensus 147 TSNRR-HLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFG--L~l~F~~~~q~~YL~IV~~~~~ 208 (249)
T PF05673_consen 147 TSNRR-HLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFG--LWLSFYPPDQEEYLAIVRHYAE 208 (249)
T ss_pred ecchh-hccchhhhhccCCCccccCcchHHHHHHhHHHhCC--cEEEecCCCHHHHHHHHHHHHH
Confidence 99987 55555 1 112222 7889999999999999999987
No 402
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.45 E-value=6.4e-07 Score=100.71 Aligned_cols=128 Identities=18% Similarity=0.177 Sum_probs=77.5
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcC----CCeeecCCcccccCCCCCChHHHHHHH-HHHHHh-----cCCceEecccc
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEK----FPVHSLGLPALLSDPSAKTPEEALVHI-FGEARR-----TTPSILYIPQF 773 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~----~~~~~~~~~~l~~~~~~g~~e~~~~~~-f~~a~~-----~~p~ilfiDEi 773 (976)
+++||+||||||||++|+++++.+.+ .+++.++.+... ....+... ...+.. ..+.||+|||+
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~ 111 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER-------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEA 111 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc-------chHHHHHHHHHHHhcCCCCCCCceEEEEeCc
Confidence 35899999999999999999998633 234444332211 11122222 222222 22459999999
Q ss_pred chhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHHH
Q 002045 774 NLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (976)
Q Consensus 774 d~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~~ 848 (976)
+.+..... ..|..+++..... .++|+ ++|.+ ..+.+ +...+ -.+++|.+|+.++...+++.++.+
T Consensus 112 ~~l~~~~~----~~L~~~le~~~~~-~~lIl-~~~~~-~~l~~--~l~sr-~~~~~~~~l~~~ei~~~l~~~~~~ 176 (319)
T PRK00440 112 DNLTSDAQ----QALRRTMEMYSQN-TRFIL-SCNYS-SKIID--PIQSR-CAVFRFSPLKKEAVAERLRYIAEN 176 (319)
T ss_pred ccCCHHHH----HHHHHHHhcCCCC-CeEEE-EeCCc-cccch--hHHHH-hheeeeCCCCHHHHHHHHHHHHHH
Confidence 99865433 3456666655443 33444 45555 23333 22112 257889999999999999988873
No 403
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.45 E-value=1.5e-06 Score=93.09 Aligned_cols=73 Identities=25% Similarity=0.366 Sum_probs=50.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhHhHH---HHHHHHHHHHHHhcCCcEEEEccccccC
Q 002045 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEA---ERQLKLLFEEAQRNQPSIIFFDEIDGLA 490 (976)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~g~~---~~~l~~~f~~a~~~~p~VL~iDEid~L~ 490 (976)
.+++|+|+||||||+|+.++|+.+...+..+ +.++..+++....... ......++.... ...+|+|||++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v--~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~ 175 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSV--LIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT 175 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeE--EEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC
Confidence 5899999999999999999999998776544 4456677765443321 112223444433 46799999997653
No 404
>PRK08181 transposase; Validated
Probab=98.44 E-value=1.1e-06 Score=95.41 Aligned_cols=104 Identities=24% Similarity=0.362 Sum_probs=64.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhHhH-HHHHHHHHHHHHHhcCCcEEEEccccccC
Q 002045 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGE-AERQLKLLFEEAQRNQPSIIFFDEIDGLA 490 (976)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~g~-~~~~l~~~f~~a~~~~p~VL~iDEid~L~ 490 (976)
...+++|+||||||||+||.++|+.+...++.+.|+ +..+++..+... .......++... ..+.+|+|||++.+.
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~--~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFT--RTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVT 180 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeee--eHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEecccccc
Confidence 346899999999999999999999998777666544 456666544221 111222333333 345699999998764
Q ss_pred CCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCc
Q 002045 491 PVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (976)
Q Consensus 491 ~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~ 530 (976)
.. ......|+.+++...... -+|.|||.+
T Consensus 181 ~~---------~~~~~~Lf~lin~R~~~~--s~IiTSN~~ 209 (269)
T PRK08181 181 KD---------QAETSVLFELISARYERR--SILITANQP 209 (269)
T ss_pred CC---------HHHHHHHHHHHHHHHhCC--CEEEEcCCC
Confidence 32 222334555555433332 355566653
No 405
>PRK06526 transposase; Provisional
Probab=98.44 E-value=5.2e-07 Score=97.41 Aligned_cols=75 Identities=27% Similarity=0.449 Sum_probs=49.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhHhH-HHHHHHHHHHHHHhcCCcEEEEccccccC
Q 002045 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGE-AERQLKLLFEEAQRNQPSIIFFDEIDGLA 490 (976)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~g~-~~~~l~~~f~~a~~~~p~VL~iDEid~L~ 490 (976)
.+.+++|+||||||||++|.+|+..+...++.+.| ++..+++...... ....+...+... ..+.+|+|||++.+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f--~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF--ATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP 172 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh--hhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC
Confidence 35689999999999999999999998877766544 4455555443211 111122222222 345799999998764
No 406
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.44 E-value=4.6e-07 Score=101.24 Aligned_cols=76 Identities=21% Similarity=0.227 Sum_probs=50.4
Q ss_pred CceEeccccchhHHHHHHHHHHHHHHHHhhCC-----------CCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCC
Q 002045 765 PSILYIPQFNLWWENAHEQLRAVLLTLLEELP-----------SHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKP 833 (976)
Q Consensus 765 p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~-----------~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P 833 (976)
..+||||||+.+.+..+.. |+..|+.-. ...++++|+|+|-....|++ +.+.++...+.++.|
T Consensus 129 ~GiL~lDEInrl~~~~q~~----Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~--aLldRF~~~v~v~~~ 202 (334)
T PRK13407 129 RGYLYIDEVNLLEDHIVDL----LLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRP--QLLDRFGLSVEVRSP 202 (334)
T ss_pred CCeEEecChHhCCHHHHHH----HHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCH--HHHhhcceEEEcCCC
Confidence 3699999999987655555 444554211 23578889888855334666 444444466777777
Q ss_pred CH-HHHHHHHHHHH
Q 002045 834 ST-EDRSLFLGRLI 846 (976)
Q Consensus 834 ~~-~er~~i~~~~l 846 (976)
.. ++|.+|++...
T Consensus 203 ~~~~e~~~il~~~~ 216 (334)
T PRK13407 203 RDVETRVEVIRRRD 216 (334)
T ss_pred CcHHHHHHHHHHhh
Confidence 66 99999998754
No 407
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=8.6e-07 Score=107.17 Aligned_cols=133 Identities=16% Similarity=0.220 Sum_probs=80.9
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeec---CC--------------ccc--ccCCCCCChHHHHHHHHHHHHhc-
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSL---GL--------------PAL--LSDPSAKTPEEALVHIFGEARRT- 763 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~---~~--------------~~l--~~~~~~g~~e~~~~~~f~~a~~~- 763 (976)
+++||+||+|||||++|+++|+.+.+...... .| .++ +.. ..+..-..+++++..+...
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~-~~~~~vd~IReii~~a~~~p 117 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDA-ASNTGVDNIRELIERAQFAP 117 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEec-cccCCHHHHHHHHHHHhhCh
Confidence 47999999999999999999999744211100 00 011 111 1123345788887776532
Q ss_pred ---CCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHH
Q 002045 764 ---TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSL 840 (976)
Q Consensus 764 ---~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~ 840 (976)
...|+||||+|.|... ..+.|+..|+..+ . .+++|++|+.+ ..|.+ . +++.-.++.|..++.++...
T Consensus 118 ~~~~~KViIIDEad~Lt~~----a~naLLK~LEePp-~-~tvfIL~t~~~-~~llp--T-IrSRc~~~~f~~l~~~ei~~ 187 (620)
T PRK14948 118 VQARWKVYVIDECHMLSTA----AFNALLKTLEEPP-P-RVVFVLATTDP-QRVLP--T-IISRCQRFDFRRIPLEAMVQ 187 (620)
T ss_pred hcCCceEEEEECccccCHH----HHHHHHHHHhcCC-c-CeEEEEEeCCh-hhhhH--H-HHhheeEEEecCCCHHHHHH
Confidence 2369999999998643 3445666666433 3 34444455555 33433 2 23312678888898888777
Q ss_pred HHHHHHH
Q 002045 841 FLGRLIE 847 (976)
Q Consensus 841 i~~~~l~ 847 (976)
.+..++.
T Consensus 188 ~L~~ia~ 194 (620)
T PRK14948 188 HLSEIAE 194 (620)
T ss_pred HHHHHHH
Confidence 7776665
No 408
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.44 E-value=1.3e-06 Score=94.40 Aligned_cols=74 Identities=31% Similarity=0.464 Sum_probs=49.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhHhHHHH-HHH-HHHHHHHhcCCcEEEEcccccc
Q 002045 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAER-QLK-LLFEEAQRNQPSIIFFDEIDGL 489 (976)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~-~l~-~~f~~a~~~~p~VL~iDEid~L 489 (976)
...+++|+||||||||+||-||++++...+..+ +.+..++++...-..... ... .+..... ...||||||+-..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv--~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~--~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISV--LFITAPDLLSKLKAAFDEGRLEEKLLRELK--KVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeE--EEEEHHHHHHHHHHHHhcCchHHHHHHHhh--cCCEEEEecccCc
Confidence 567999999999999999999999998666544 445667777654332221 111 1222122 2359999999654
No 409
>PRK08181 transposase; Validated
Probab=98.43 E-value=1.9e-07 Score=101.39 Aligned_cols=107 Identities=21% Similarity=0.234 Sum_probs=65.6
Q ss_pred CceeeccCCCCcHhhHHHHHHHhh--cCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHEL--EKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAH 781 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l--~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~~ 781 (976)
.+++|+|||||||||||.+|++++ .+..++.+..++|+........+....+++.... .+.+|+|||+..+...
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~~-- 182 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTKD-- 182 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccCC--
Confidence 479999999999999999999864 2456777777777653311111122333444333 4579999999886543
Q ss_pred HHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcC
Q 002045 782 EQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEG 816 (976)
Q Consensus 782 ~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~ 816 (976)
......|..+++..-... -+|.|||.++..+..
T Consensus 183 ~~~~~~Lf~lin~R~~~~--s~IiTSN~~~~~w~~ 215 (269)
T PRK08181 183 QAETSVLFELISARYERR--SILITANQPFGEWNR 215 (269)
T ss_pred HHHHHHHHHHHHHHHhCC--CEEEEcCCCHHHHHH
Confidence 222233444444322122 255688988666654
No 410
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.41 E-value=3.8e-06 Score=99.65 Aligned_cols=75 Identities=19% Similarity=0.157 Sum_probs=49.5
Q ss_pred CceeeccCCCCcHhhHHHHHHHhh--cCCCeeecCCc------------------ccc--------cCC-CCCChHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHEL--EKFPVHSLGLP------------------ALL--------SDP-SAKTPEEALV 754 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l--~~~~~~~~~~~------------------~l~--------~~~-~~g~~e~~~~ 754 (976)
.-+|+.||||||||+++-.++... .+-+.+++... .++ .-+ .....+..+.
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~~~ 343 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLEDHLQ 343 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHHHHH
Confidence 348999999999999988887753 22234433321 100 000 0012366777
Q ss_pred HHHHHHHhcCCceEeccccchhHH
Q 002045 755 HIFGEARRTTPSILYIPQFNLWWE 778 (976)
Q Consensus 755 ~~f~~a~~~~p~ilfiDEid~l~~ 778 (976)
.+.+.+....|.+|+||-+..+..
T Consensus 344 ~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 344 IIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHcCCCEEEEcCHHHHHH
Confidence 888888888999999999998754
No 411
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=3.1e-07 Score=106.23 Aligned_cols=132 Identities=11% Similarity=0.137 Sum_probs=76.9
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeee--------cC-C--------------cccccCCCCC---ChHHHHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHS--------LG-L--------------PALLSDPSAK---TPEEALVHIF 757 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~--------~~-~--------------~~l~~~~~~g---~~e~~~~~~f 757 (976)
..+||+||||||||++|+++|+.+....... .. + .++. . +.| ..-..++.+.
T Consensus 39 ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~-~-~~~~~~~~id~Ir~l~ 116 (397)
T PRK14955 39 HGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNIS-E-FDAASNNSVDDIRLLR 116 (397)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeE-e-ecccccCCHHHHHHHH
Confidence 3599999999999999999999874321100 00 0 0010 0 011 1124566655
Q ss_pred HHHHh----cCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCC
Q 002045 758 GEARR----TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKP 833 (976)
Q Consensus 758 ~~a~~----~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P 833 (976)
..+.. ....|+||||+|.+.... .+.|+..|+..+. ..++|++| +.+ ..|.+ . +.+.-.+++|.++
T Consensus 117 ~~~~~~p~~~~~kvvIIdea~~l~~~~----~~~LLk~LEep~~-~t~~Il~t-~~~-~kl~~--t-l~sR~~~v~f~~l 186 (397)
T PRK14955 117 ENVRYGPQKGRYRVYIIDEVHMLSIAA----FNAFLKTLEEPPP-HAIFIFAT-TEL-HKIPA--T-IASRCQRFNFKRI 186 (397)
T ss_pred HHHhhchhcCCeEEEEEeChhhCCHHH----HHHHHHHHhcCCC-CeEEEEEe-CCh-HHhHH--H-HHHHHHHhhcCCC
Confidence 54422 123599999999987533 3345566654443 34455544 434 33332 2 2221267889999
Q ss_pred CHHHHHHHHHHHHH
Q 002045 834 STEDRSLFLGRLIE 847 (976)
Q Consensus 834 ~~~er~~i~~~~l~ 847 (976)
+.++....++..+.
T Consensus 187 ~~~ei~~~l~~~~~ 200 (397)
T PRK14955 187 PLEEIQQQLQGICE 200 (397)
T ss_pred CHHHHHHHHHHHHH
Confidence 99998888887775
No 412
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.41 E-value=1e-06 Score=98.51 Aligned_cols=103 Identities=18% Similarity=0.293 Sum_probs=62.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhHhHH---HHHHHHHHHHHHhcCCcEEEEcccccc
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEA---ERQLKLLFEEAQRNQPSIIFFDEIDGL 489 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~g~~---~~~l~~~f~~a~~~~p~VL~iDEid~L 489 (976)
..+++|+||+|||||+|+.++|+++...+..+.| ++..+++....... .......+... ....+|+|||+...
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y--~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e 258 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIY--RTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTE 258 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEE--EEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCC
Confidence 3789999999999999999999999877765544 55566655432210 00111112222 23469999999765
Q ss_pred CCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCC
Q 002045 490 APVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (976)
Q Consensus 490 ~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~ 529 (976)
.. .......|+.+++.....+.-+| .|||.
T Consensus 259 ~~---------t~~~~~~Lf~iin~R~~~~k~tI-iTSNl 288 (329)
T PRK06835 259 KI---------TEFSKSELFNLINKRLLRQKKMI-ISTNL 288 (329)
T ss_pred CC---------CHHHHHHHHHHHHHHHHCCCCEE-EECCC
Confidence 32 22334556666665443333344 45554
No 413
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.40 E-value=9.7e-07 Score=98.82 Aligned_cols=141 Identities=17% Similarity=0.199 Sum_probs=81.9
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecC-----C--cccc-----c------------------CCCCCChHHH-
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLG-----L--PALL-----S------------------DPSAKTPEEA- 752 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~-----~--~~l~-----~------------------~~~~g~~e~~- 752 (976)
.++||.|++|||||++|++++..+....++.-. . +.++ . ....|.++..
T Consensus 39 ~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l 118 (350)
T CHL00081 39 GGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRV 118 (350)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhhhcccccccceeccccceecCCCCchhhc
Confidence 379999999999999999998876432221110 0 0000 0 0001222322
Q ss_pred -----HHHHHHHHH---------hcCCceEeccccchhHHHHHHHHHHHHHHHHhhC-------CCCCCEEEEEecCCCc
Q 002045 753 -----LVHIFGEAR---------RTTPSILYIPQFNLWWENAHEQLRAVLLTLLEEL-------PSHLPILLLGSSSVPL 811 (976)
Q Consensus 753 -----~~~~f~~a~---------~~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~-------~~~~~v~vi~ttn~~~ 811 (976)
+...|.... +...+|||||||+.+.+..+..++..+..-.-.+ ....++++|+|.|-..
T Consensus 119 ~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~e 198 (350)
T CHL00081 119 CGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEE 198 (350)
T ss_pred cCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCccc
Confidence 122222111 2235799999999998877776554432211011 1134788888877553
Q ss_pred ccCcCCCCCCcCCccEEEecCCC-HHHHHHHHHHHH
Q 002045 812 AEVEGDPSTVFPLRSVYQVEKPS-TEDRSLFLGRLI 846 (976)
Q Consensus 812 ~~Ld~~~~~~~~~r~~i~v~~P~-~~er~~i~~~~l 846 (976)
..|.+ +.+.++...+.+..|+ .+++.+|++...
T Consensus 199 g~l~~--~LldRf~l~i~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 199 GELRP--QLLDRFGMHAEIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred CCCCH--HHHHHhCceeecCCCCChHHHHHHHHhhh
Confidence 34666 4444444778888887 599999998653
No 414
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=7.9e-07 Score=104.70 Aligned_cols=126 Identities=15% Similarity=0.225 Sum_probs=78.7
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCC-----------------------CeeecCCcccccCCCCCChHHHHHHHHHHHH
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKF-----------------------PVHSLGLPALLSDPSAKTPEEALVHIFGEAR 761 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~-----------------------~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~ 761 (976)
.+||+||+|+|||++|+++|+.+.+. .++.++... ...-..++.+...+.
T Consensus 38 ayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas-------~~gId~IRelie~~~ 110 (535)
T PRK08451 38 AYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAAS-------NRGIDDIRELIEQTK 110 (535)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEecccc-------ccCHHHHHHHHHHHh
Confidence 47999999999999999999986321 122221110 001245666554432
Q ss_pred hc----CCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHH
Q 002045 762 RT----TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTED 837 (976)
Q Consensus 762 ~~----~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~e 837 (976)
.. ...|++|||+|.+.... .+.|+..|+..+. ..+||++| +.+ ..|.+ +.+-+ -.++.|.+++.++
T Consensus 111 ~~P~~~~~KVvIIDEad~Lt~~A----~NALLK~LEEpp~-~t~FIL~t-td~-~kL~~--tI~SR-c~~~~F~~Ls~~e 180 (535)
T PRK08451 111 YKPSMARFKIFIIDEVHMLTKEA----FNALLKTLEEPPS-YVKFILAT-TDP-LKLPA--TILSR-TQHFRFKQIPQNS 180 (535)
T ss_pred hCcccCCeEEEEEECcccCCHHH----HHHHHHHHhhcCC-ceEEEEEE-CCh-hhCch--HHHhh-ceeEEcCCCCHHH
Confidence 21 22599999999986543 4456677766543 34444444 545 45554 22222 3688899999999
Q ss_pred HHHHHHHHHH
Q 002045 838 RSLFLGRLIE 847 (976)
Q Consensus 838 r~~i~~~~l~ 847 (976)
....++.++.
T Consensus 181 i~~~L~~Il~ 190 (535)
T PRK08451 181 IISHLKTILE 190 (535)
T ss_pred HHHHHHHHHH
Confidence 8888888776
No 415
>PRK06921 hypothetical protein; Provisional
Probab=98.40 E-value=1.5e-06 Score=94.72 Aligned_cols=72 Identities=19% Similarity=0.294 Sum_probs=46.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhc-CCcEEEEEecchhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccc
Q 002045 412 PPRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDG 488 (976)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~ 488 (976)
...+++|+||||||||+|+.++|+++... +..+.| +...+++....... ......+... ....||+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y--~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLY--FPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEE--EEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEecccc
Confidence 45789999999999999999999998765 555544 44445444322111 1112222222 3456999999954
No 416
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=1.2e-06 Score=106.88 Aligned_cols=131 Identities=26% Similarity=0.337 Sum_probs=95.7
Q ss_pred cccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHh---
Q 002045 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS--- 456 (976)
Q Consensus 380 ~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~--- 456 (976)
.|+|++++...|-++|..+.. .+... .+...+||.||.|+|||-||++||..+. +..-.|+.++.+++..
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~--gl~~~---~~~awflflGpdgvGKt~lAkaLA~~~F--gse~~~IriDmse~~evsk 635 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRA--GLKDP---NPDAWFLFLGPDGVGKTELAKALAEYVF--GSEENFIRLDMSEFQEVSK 635 (898)
T ss_pred hccchHHHHHHHHHHHHhhhc--ccCCC---CCCeEEEEECCCchhHHHHHHHHHHHHc--CCccceEEechhhhhhhhh
Confidence 489999999999999876421 11110 3667899999999999999999999984 4456788888886432
Q ss_pred ------hhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCC---------CCcE
Q 002045 457 ------KWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS---------RGQV 521 (976)
Q Consensus 457 ------~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~---------~~~v 521 (976)
.|+|..+ ...+.+..++...+||+|||||.- +..++..|+.+|+...- -.++
T Consensus 636 ligsp~gyvG~e~--gg~LteavrrrP~sVVLfdeIEkA-----------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~ 702 (898)
T KOG1051|consen 636 LIGSPPGYVGKEE--GGQLTEAVKRRPYSVVLFEEIEKA-----------HPDVLNILLQLLDRGRLTDSHGREVDFKNA 702 (898)
T ss_pred ccCCCcccccchh--HHHHHHHHhcCCceEEEEechhhc-----------CHHHHHHHHHHHhcCccccCCCcEeeccce
Confidence 2444333 345666677777799999999854 56788888888875322 2378
Q ss_pred EEEecCCCc
Q 002045 522 VLIGATNRV 530 (976)
Q Consensus 522 ivI~atn~~ 530 (976)
|||+|+|.-
T Consensus 703 I~IMTsn~~ 711 (898)
T KOG1051|consen 703 IFIMTSNVG 711 (898)
T ss_pred EEEEecccc
Confidence 999998863
No 417
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.38 E-value=6.3e-07 Score=103.10 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=22.4
Q ss_pred CceeeccCCCCcHhhHHHHHHHhh
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHEL 727 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l 727 (976)
.++||.||||||||++|++|+..+
T Consensus 40 ~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 40 ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred CCEEEECCCChhHHHHHHHHHHHh
Confidence 579999999999999999999975
No 418
>PRK09183 transposase/IS protein; Provisional
Probab=98.37 E-value=1.4e-06 Score=94.60 Aligned_cols=105 Identities=27% Similarity=0.384 Sum_probs=63.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhHhH-HHHHHHHHHHHHHhcCCcEEEEcccccc
Q 002045 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGE-AERQLKLLFEEAQRNQPSIIFFDEIDGL 489 (976)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~g~-~~~~l~~~f~~a~~~~p~VL~iDEid~L 489 (976)
....+++|+||||||||+|+.+++..+...++.+.|+ ++.+++..+... ....+..++... ...+.+|+|||++.+
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~--~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT--TAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE--eHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 3456899999999999999999999877677666554 455555433211 111233444433 245679999999765
Q ss_pred CCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCC
Q 002045 490 APVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (976)
Q Consensus 490 ~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~ 529 (976)
... ......|+.+++.....+. +|.|||.
T Consensus 177 ~~~---------~~~~~~lf~li~~r~~~~s--~iiTsn~ 205 (259)
T PRK09183 177 PFS---------QEEANLFFQVIAKRYEKGS--MILTSNL 205 (259)
T ss_pred CCC---------hHHHHHHHHHHHHHHhcCc--EEEecCC
Confidence 322 1222345555544333333 4556765
No 419
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.37 E-value=2.4e-07 Score=114.30 Aligned_cols=77 Identities=29% Similarity=0.524 Sum_probs=70.6
Q ss_pred HhhhhhhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcC
Q 002045 899 LRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTC 975 (976)
Q Consensus 899 Lr~~L~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~ 975 (976)
+...++.++.++........|..||+..++|+|.+||++||||.||+.++..+.|.++++|..|+.||+.||+.||.
T Consensus 566 ~~kLl~~~l~~lq~kD~~gif~~pvd~~e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn~ 642 (1051)
T KOG0955|consen 566 FKKLLQKSLDKLQKKDSYGIFAEPVDPSELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYNA 642 (1051)
T ss_pred HHHHHHHHHHHhhcccccCceeeccChhhcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhhc
Confidence 34445566777778888999999999999999999999999999999999999999999999999999999999995
No 420
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.37 E-value=5.8e-07 Score=105.29 Aligned_cols=149 Identities=22% Similarity=0.321 Sum_probs=91.9
Q ss_pred CCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEE-----EEEec
Q 002045 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVS-----FYMRK 450 (976)
Q Consensus 376 ~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~-----~~~~~ 450 (976)
..|.++.|+..++..+.- .+....+++|+||||||||++++.++..+........ ++.+.
T Consensus 188 ~d~~~v~Gq~~~~~al~l---------------aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~ 252 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEI---------------TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLV 252 (506)
T ss_pred cCeEEEECcHHHHhhhhe---------------eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhh
Confidence 367788898876665421 1244578999999999999999999876532111100 01110
Q ss_pred ch------------------hHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHh
Q 002045 451 GA------------------DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALM 512 (976)
Q Consensus 451 ~~------------------~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~l 512 (976)
+. .-....+|.....-...+..|..+ +|||||++.+ ...++..|+..|
T Consensus 253 g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gG---vLfLDEi~e~-----------~~~~~~~L~~~L 318 (506)
T PRK09862 253 NAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNG---VLFLDELPEF-----------ERRTLDALREPI 318 (506)
T ss_pred ccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCC---EEecCCchhC-----------CHHHHHHHHHHH
Confidence 00 000011222111112234444444 9999999766 456778888887
Q ss_pred hccC-----------CCCcEEEEecCCCcc---------------------ccchhhcCCCCCccccCCCCCCHH
Q 002045 513 DGLD-----------SRGQVVLIGATNRVD---------------------AIDGALRRPGRFDREFNFPLPGCE 555 (976)
Q Consensus 513 d~~~-----------~~~~vivI~atn~~~---------------------~ld~aL~r~gRf~~~i~~~~P~~~ 555 (976)
+.-. ...++.+|+|+|+.. .|+.+++. ||+..+.++.|+.+
T Consensus 319 E~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 319 ESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred HcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 5322 123689999999853 36667888 99999999998876
No 421
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=1.5e-06 Score=97.38 Aligned_cols=132 Identities=19% Similarity=0.137 Sum_probs=80.6
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCee---------------ecCCcccc--cCCCCC--ChHHHHHHHHHHHHh--
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVH---------------SLGLPALL--SDPSAK--TPEEALVHIFGEARR-- 762 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~---------------~~~~~~l~--~~~~~g--~~e~~~~~~f~~a~~-- 762 (976)
..+||+||+|+|||++|.++|+.+....-. .-+-++++ .....+ -.-..++++...+..
T Consensus 23 ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~~ 102 (328)
T PRK05707 23 HAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQTA 102 (328)
T ss_pred eeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhcc
Confidence 469999999999999999999986431100 00001111 000001 123467776655543
Q ss_pred --cCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHH
Q 002045 763 --TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSL 840 (976)
Q Consensus 763 --~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~ 840 (976)
...-|++||++|.+-... .+.|+..|+.-+ ..+++|.+|+.+ ..|.+ ..+-| -.++.|.+|+.++-..
T Consensus 103 ~~~~~kv~iI~~a~~m~~~a----aNaLLK~LEEPp--~~~~fiL~t~~~-~~ll~--TI~SR-c~~~~~~~~~~~~~~~ 172 (328)
T PRK05707 103 QLGGRKVVLIEPAEAMNRNA----ANALLKSLEEPS--GDTVLLLISHQP-SRLLP--TIKSR-CQQQACPLPSNEESLQ 172 (328)
T ss_pred ccCCCeEEEECChhhCCHHH----HHHHHHHHhCCC--CCeEEEEEECCh-hhCcH--HHHhh-ceeeeCCCcCHHHHHH
Confidence 345689999999977543 445666776644 355556677777 45555 22222 2578899999998887
Q ss_pred HHHHH
Q 002045 841 FLGRL 845 (976)
Q Consensus 841 i~~~~ 845 (976)
.++..
T Consensus 173 ~L~~~ 177 (328)
T PRK05707 173 WLQQA 177 (328)
T ss_pred HHHHh
Confidence 77654
No 422
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.2e-07 Score=106.96 Aligned_cols=48 Identities=35% Similarity=0.530 Sum_probs=39.7
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHH
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAA 437 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l 437 (976)
...|.||+|++..|+.+..... -..|+||+||||||||++|+-+...|
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccC
Confidence 4579999999999999866532 24689999999999999999886554
No 423
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=6.6e-07 Score=108.35 Aligned_cols=133 Identities=15% Similarity=0.226 Sum_probs=76.4
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeee-cC---------------Cccccc-CCCCCChHHHHHHHHHHHHh----c
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHS-LG---------------LPALLS-DPSAKTPEEALVHIFGEARR----T 763 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~-~~---------------~~~l~~-~~~~g~~e~~~~~~f~~a~~----~ 763 (976)
.+||+||+|||||++|+++|+.+....... .. ..+++. .......-..++.+...+.. .
T Consensus 40 a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~ 119 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALA 119 (585)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccC
Confidence 479999999999999999999874211000 00 001100 00001122345555544332 2
Q ss_pred CCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHH
Q 002045 764 TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLG 843 (976)
Q Consensus 764 ~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~ 843 (976)
...||||||+|.|... ..+.|+..|+..+. ..+||++|++ . +.+.+ . +.+...++.|..++..+...+++
T Consensus 120 ~~kVvIIDEa~~L~~~----a~naLLk~LEepp~-~tv~Il~t~~-~-~kll~--t-I~SR~~~i~f~~l~~~el~~~L~ 189 (585)
T PRK14950 120 RYKVYIIDEVHMLSTA----AFNALLKTLEEPPP-HAIFILATTE-V-HKVPA--T-ILSRCQRFDFHRHSVADMAAHLR 189 (585)
T ss_pred CeEEEEEeChHhCCHH----HHHHHHHHHhcCCC-CeEEEEEeCC-h-hhhhH--H-HHhccceeeCCCCCHHHHHHHHH
Confidence 2459999999988653 23456666665443 3455555544 4 23333 1 22212578899999999888888
Q ss_pred HHHH
Q 002045 844 RLIE 847 (976)
Q Consensus 844 ~~l~ 847 (976)
..+.
T Consensus 190 ~~a~ 193 (585)
T PRK14950 190 KIAA 193 (585)
T ss_pred HHHH
Confidence 7765
No 424
>PRK06526 transposase; Provisional
Probab=98.35 E-value=2.2e-07 Score=100.30 Aligned_cols=106 Identities=13% Similarity=0.103 Sum_probs=60.0
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAH 781 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~~ 781 (976)
.+++|+||||||||+||.+|+.++- +..++.+..++++...........+...+... ..+.+|+|||++.+...
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~~-- 174 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPFE-- 174 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCCC--
Confidence 5799999999999999999998742 34555555555443221000011122222222 34689999999986522
Q ss_pred HHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCc
Q 002045 782 EQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVE 815 (976)
Q Consensus 782 ~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld 815 (976)
......|..+++..-.... +|.|||.++..+.
T Consensus 175 ~~~~~~L~~li~~r~~~~s--~IitSn~~~~~w~ 206 (254)
T PRK06526 175 PEAANLFFQLVSSRYERAS--LIVTSNKPFGRWG 206 (254)
T ss_pred HHHHHHHHHHHHHHHhcCC--EEEEcCCCHHHHH
Confidence 1222334444443222222 5668898866554
No 425
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.34 E-value=2.6e-06 Score=94.58 Aligned_cols=74 Identities=18% Similarity=0.331 Sum_probs=50.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhHhHHH-HHHHHHHHHHHhcCCcEEEEcccccc
Q 002045 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAE-RQLKLLFEEAQRNQPSIIFFDEIDGL 489 (976)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~g~~~-~~l~~~f~~a~~~~p~VL~iDEid~L 489 (976)
...|++|+||+|||||+|+.|+|+++...+..+.|+. .++++........ ..+...++... ...||+|||+..-
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~--~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH--FPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE--HHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCc
Confidence 4579999999999999999999999988777666554 4455543322111 11233333332 3469999999654
No 426
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.33 E-value=6.9e-07 Score=97.55 Aligned_cols=141 Identities=23% Similarity=0.350 Sum_probs=77.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhHhHHHHHHHHHHHHH----H-------hcCCc
Q 002045 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEA----Q-------RNQPS 479 (976)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a----~-------~~~p~ 479 (976)
....++||+||+|||||++++.+-..+....+. ...++.+... +...++.+++.. . .++.+
T Consensus 31 ~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~--~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~l 102 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYL--VITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKL 102 (272)
T ss_dssp HCTEEEEEESSTTSSHHHHHHHHHHCSTTCCEE--EEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEE
T ss_pred HcCCcEEEECCCCCchhHHHHhhhccCCccccc--eeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEE
Confidence 345789999999999999999876655432212 2223332211 112222222211 0 12346
Q ss_pred EEEEccccccCCCCCChhhhhHHHHHHHHHHHhh--ccCCC--------CcEEEEecCCCcc---ccchhhcCCCCCccc
Q 002045 480 IIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMD--GLDSR--------GQVVLIGATNRVD---AIDGALRRPGRFDRE 546 (976)
Q Consensus 480 VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld--~~~~~--------~~vivI~atn~~~---~ld~aL~r~gRf~~~ 546 (976)
|+||||++.-.+. ..+.+ ..+.-|.++++ +.... .++.+|+++++.. .|++.|.| .| .+
T Consensus 103 v~fiDDlN~p~~d--~ygtq---~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i 174 (272)
T PF12775_consen 103 VLFIDDLNMPQPD--KYGTQ---PPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NI 174 (272)
T ss_dssp EEEEETTT-S-----TTS-----HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EE
T ss_pred EEEecccCCCCCC--CCCCc---CHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EE
Confidence 9999999854432 22222 23333333343 11111 3577888887643 37888888 55 68
Q ss_pred cCCCCCCHHHHHHHHHHHHhc
Q 002045 547 FNFPLPGCEARAEILDIHTRK 567 (976)
Q Consensus 547 i~~~~P~~~er~~Il~~~l~~ 567 (976)
+.++.|+.+....|+..++..
T Consensus 175 ~~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 175 LNIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp EE----TCCHHHHHHHHHHHH
T ss_pred EEecCCChHHHHHHHHHHHhh
Confidence 999999999999999887764
No 427
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1.5e-06 Score=105.23 Aligned_cols=127 Identities=17% Similarity=0.307 Sum_probs=82.5
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcC------------------------CCeeecCCcccccCCCCCChHHHHHHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEK------------------------FPVHSLGLPALLSDPSAKTPEEALVHIFGE 759 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~------------------------~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~ 759 (976)
..+||+||+|+|||++|+++|+.+.. ++++.++... ...-..++.+...
T Consensus 40 hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~-------~~~vd~Ir~li~~ 112 (614)
T PRK14971 40 HAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAAS-------NNSVDDIRNLIEQ 112 (614)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEecccc-------cCCHHHHHHHHHH
Confidence 34899999999999999999998742 2233332210 1113456777666
Q ss_pred HHhcC----CceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCH
Q 002045 760 ARRTT----PSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPST 835 (976)
Q Consensus 760 a~~~~----p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~ 835 (976)
+.... .-|++|||++.+... ..+.|+..|+..+. ..+||++|++.. .|-+ .+++.-.++.|.+++.
T Consensus 113 ~~~~P~~~~~KVvIIdea~~Ls~~----a~naLLK~LEepp~-~tifIL~tt~~~--kIl~---tI~SRc~iv~f~~ls~ 182 (614)
T PRK14971 113 VRIPPQIGKYKIYIIDEVHMLSQA----AFNAFLKTLEEPPS-YAIFILATTEKH--KILP---TILSRCQIFDFNRIQV 182 (614)
T ss_pred HhhCcccCCcEEEEEECcccCCHH----HHHHHHHHHhCCCC-CeEEEEEeCCch--hchH---HHHhhhheeecCCCCH
Confidence 64322 249999999998653 34457777776543 455555555443 3333 2333237889999999
Q ss_pred HHHHHHHHHHHH
Q 002045 836 EDRSLFLGRLIE 847 (976)
Q Consensus 836 ~er~~i~~~~l~ 847 (976)
++....++.++.
T Consensus 183 ~ei~~~L~~ia~ 194 (614)
T PRK14971 183 ADIVNHLQYVAS 194 (614)
T ss_pred HHHHHHHHHHHH
Confidence 999988887776
No 428
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.32 E-value=4.5e-06 Score=100.40 Aligned_cols=139 Identities=15% Similarity=0.124 Sum_probs=79.1
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeee-cCCc----------------ccccCCCCCChHHHHHHHHHHHHh-----
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHS-LGLP----------------ALLSDPSAKTPEEALVHIFGEARR----- 762 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~-~~~~----------------~l~~~~~~g~~e~~~~~~f~~a~~----- 762 (976)
.++|+||||||||++++++|..+ +..++. ++.. .-+..+ ...-+.+..++..|..
T Consensus 112 illL~GP~GsGKTTl~~~la~~l-~~~~~Ew~npv~~~~~~~~~~~~~s~~~~~~~~--~s~~~~F~~fl~~a~~~~~~~ 188 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIKILSKEL-GIQVQEWSNPTLPDFQKNDHKVTLSLESCFSNF--QSQIEVFSEFLLRATNKLQML 188 (637)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-hhHHHHHhhhhhhcccccccccchhhhhccccc--cchHHHHHHHHHHHHhhhccc
Confidence 38999999999999999999986 443322 1110 001111 1223445556655542
Q ss_pred -----cCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCccc-------CcC---C-CCCC-cCCc
Q 002045 763 -----TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAE-------VEG---D-PSTV-FPLR 825 (976)
Q Consensus 763 -----~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~-------Ld~---~-~~~~-~~~r 825 (976)
....|||||||+.++......+...|.... ++.....+|+++|..+... ... . ...+ .+.-
T Consensus 189 g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~--~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv 266 (637)
T TIGR00602 189 GDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKY--VSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV 266 (637)
T ss_pred ccccCCceeEEEeecchhhchhhHHHHHHHHHHHh--hcCCCceEEEEecCCccccccccccccchhcccCHhHhcccce
Confidence 245699999999988654443333333122 2223334445455333100 110 0 0222 1222
Q ss_pred cEEEecCCCHHHHHHHHHHHHHH
Q 002045 826 SVYQVEKPSTEDRSLFLGRLIEA 848 (976)
Q Consensus 826 ~~i~v~~P~~~er~~i~~~~l~~ 848 (976)
.+|.|.+.+.....+.|+.++..
T Consensus 267 ~~I~FnPia~t~l~K~L~rIl~~ 289 (637)
T TIGR00602 267 SNISFNPIAPTIMKKFLNRIVTI 289 (637)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHh
Confidence 67899999999999999988874
No 429
>PRK12377 putative replication protein; Provisional
Probab=98.30 E-value=5.9e-07 Score=96.35 Aligned_cols=103 Identities=17% Similarity=0.240 Sum_probs=61.4
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcccccCCC----CCChHHHHHHHHHHHHhcCCceEeccccchhH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPS----AKTPEEALVHIFGEARRTTPSILYIPQFNLWW 777 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~~~~----~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~ 777 (976)
.+++|+|||||||||||.||++.+. +..++.+..++++.... .++++ ..++... ....+|+|||+....
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~---~~~l~~l--~~~dLLiIDDlg~~~ 176 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSG---EKFLQEL--CKVDLLVLDEIGIQR 176 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchH---HHHHHHh--cCCCEEEEcCCCCCC
Confidence 4699999999999999999999863 45667777666654210 11111 2233333 345799999996643
Q ss_pred HHHHHHHHHHHHHHHhhC-CCCCCEEEEEecCCCcccCc
Q 002045 778 ENAHEQLRAVLLTLLEEL-PSHLPILLLGSSSVPLAEVE 815 (976)
Q Consensus 778 ~~~~~~~~~~l~~ll~~~-~~~~~v~vi~ttn~~~~~Ld 815 (976)
.. ......|..+++.- ....+ +|.|||..+..|.
T Consensus 177 ~s--~~~~~~l~~ii~~R~~~~~p--tiitSNl~~~~l~ 211 (248)
T PRK12377 177 ET--KNEQVVLNQIIDRRTASMRS--VGMLTNLNHEAMS 211 (248)
T ss_pred CC--HHHHHHHHHHHHHHHhcCCC--EEEEcCCCHHHHH
Confidence 21 12233444455432 11223 3558898755554
No 430
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=7.1e-06 Score=89.39 Aligned_cols=123 Identities=14% Similarity=0.154 Sum_probs=81.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcC-----------CcEEEEEecchhHHhhhHhHHHHHHHHHHHHHHh----
Q 002045 411 TPPRGVLLCGPPGTGKTLIARALACAASKAG-----------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR---- 475 (976)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~-----------~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~---- 475 (976)
.-+..+||+||.|+||+.+|.++|+.+.+.. .+..++.+....- +..+ .-..++.+...+..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~-~~~I--~idqiR~l~~~~~~~p~e 93 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK-GRLH--SIETPRAIKKQIWIHPYE 93 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC-CCcC--cHHHHHHHHHHHhhCccC
Confidence 4466899999999999999999999986421 1222222211100 0000 12234444444332
Q ss_pred cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCC
Q 002045 476 NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLP 552 (976)
Q Consensus 476 ~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P 552 (976)
+..-|++|+++|.| .....+.||..|+. ...++++|..|+.++.|.|.+++ |+ ..+.|+++
T Consensus 94 ~~~kv~ii~~ad~m-----------t~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRM-----------TLDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred CCceEEEEechhhc-----------CHHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cc-eEEEccch
Confidence 33459999999988 45677889999994 55678888888888999999998 76 55667654
No 431
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.28 E-value=3.3e-07 Score=112.04 Aligned_cols=76 Identities=34% Similarity=0.516 Sum_probs=69.6
Q ss_pred hhhhhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 901 MCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 901 ~~L~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
..+-.+++++..-...|+|..||+++.+|+||.+|++||||.||.+++..+.|.+..+|.+||+||+.||..||.+
T Consensus 1385 ~~~d~~vs~~~~ipes~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~ 1460 (1563)
T KOG0008|consen 1385 FILDNIVSQMKEIPESWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGA 1460 (1563)
T ss_pred hhhhhHHHHHHhcchhcccccccchhhchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCc
Confidence 3445566777778889999999999999999999999999999999999999999999999999999999999964
No 432
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.28 E-value=1.1e-05 Score=96.87 Aligned_cols=40 Identities=30% Similarity=0.382 Sum_probs=31.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-CCcEEEEE
Q 002045 409 HITPPRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYM 448 (976)
Q Consensus 409 ~~~~~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~ 448 (976)
|+++...+||+|+||+|||+++..++...... +..+-|+.
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis 67 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVT 67 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 57788899999999999999999887665444 55555543
No 433
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.27 E-value=1.5e-06 Score=103.18 Aligned_cols=197 Identities=20% Similarity=0.215 Sum_probs=117.1
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHh
Q 002045 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS 456 (976)
Q Consensus 377 ~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~ 456 (976)
.+.+++|.......+.+.+.. . ......|||+|++|||||++|+++....... ..+|+.++|+.+..
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~----------~-~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~--~~~~i~i~c~~~~~ 202 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGR----------L-SRSSISVLINGESGTGKELVAHALHRHSPRA--KAPFIALNMAAIPK 202 (469)
T ss_pred ccccceecCHHHHHHHHHHHH----------H-hccCCeEEEEeCCCCcHHHHHHHHHhcCCCC--CCCeEeeeCCCCCH
Confidence 456788887777666655432 1 1345679999999999999999999875432 36788999876533
Q ss_pred hhH-----hHHHH-------HHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC-----C--
Q 002045 457 KWV-----GEAER-------QLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-----S-- 517 (976)
Q Consensus 457 ~~~-----g~~~~-------~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~-----~-- 517 (976)
..+ |.... .....|..+ ....||||||+.|. ..++..|+..++... .
T Consensus 203 ~~~~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l~-----------~~~q~~L~~~l~~~~~~~~~~~~ 268 (469)
T PRK10923 203 DLIESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDMP-----------LDVQTRLLRVLADGQFYRVGGYA 268 (469)
T ss_pred HHHHHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccCC-----------HHHHHHHHHHHhcCcEEeCCCCC
Confidence 211 11000 000112222 23489999999884 456667777775321 0
Q ss_pred --CCcEEEEecCCCcc-------ccchhhcCCCCC-ccccCCCCCCH--HHHHHHHHHHHhc----CC---CCCCHHHHH
Q 002045 518 --RGQVVLIGATNRVD-------AIDGALRRPGRF-DREFNFPLPGC--EARAEILDIHTRK----WK---QPPSRELKS 578 (976)
Q Consensus 518 --~~~vivI~atn~~~-------~ld~aL~r~gRf-~~~i~~~~P~~--~er~~Il~~~l~~----~~---~~~~~~~l~ 578 (976)
..++.||++|+..- .+.+.|.. || ...|.+|+.-. ++...++..++.. .+ ..++.+.+.
T Consensus 269 ~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~ 346 (469)
T PRK10923 269 PVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEA 346 (469)
T ss_pred eEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 12457777776521 13334443 44 23444544322 3444455555443 22 236777877
Q ss_pred HHHHHccCCCHHHHHHHHHHHHHH
Q 002045 579 ELAASCVGYCGADLKALCTEAAIR 602 (976)
Q Consensus 579 ~lA~~t~G~s~~dI~~l~~~A~~~ 602 (976)
.|..+.=--+-++|++++..++..
T Consensus 347 ~L~~~~wpgNv~eL~~~i~~~~~~ 370 (469)
T PRK10923 347 ALTRLAWPGNVRQLENTCRWLTVM 370 (469)
T ss_pred HHHhCCCCChHHHHHHHHHHHHHh
Confidence 777776656778999999887753
No 434
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.27 E-value=5.9e-06 Score=93.05 Aligned_cols=124 Identities=18% Similarity=0.121 Sum_probs=76.0
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcC-----------------------CCeeecCCcccccCCCCCChHHHHHHHHHHHH
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEK-----------------------FPVHSLGLPALLSDPSAKTPEEALVHIFGEAR 761 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~-----------------------~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~ 761 (976)
.+||+||||||||++|.++|+.+.+ ..++.++.+..... .-..+.++++-....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~---~i~~~~vr~~~~~~~ 102 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKI---DIIVEQVRELAEFLS 102 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCC---cchHHHHHHHHHHhc
Confidence 3999999999999999999998742 35666665544321 112445555544433
Q ss_pred hc----CCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHH
Q 002045 762 RT----TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTED 837 (976)
Q Consensus 762 ~~----~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~e 837 (976)
.. ..-|++|||+|.+...++. +|+..|.. +.....+|.+||.+...+++ +++.-.++.|.+|+...
T Consensus 103 ~~~~~~~~kviiidead~mt~~A~n----allk~lEe--p~~~~~~il~~n~~~~il~t----I~SRc~~i~f~~~~~~~ 172 (325)
T COG0470 103 ESPLEGGYKVVIIDEADKLTEDAAN----ALLKTLEE--PPKNTRFILITNDPSKILPT----IRSRCQRIRFKPPSRLE 172 (325)
T ss_pred cCCCCCCceEEEeCcHHHHhHHHHH----HHHHHhcc--CCCCeEEEEEcCChhhccch----hhhcceeeecCCchHHH
Confidence 32 3469999999998874443 34444433 23456666677877444443 33312567677655544
Q ss_pred HHHH
Q 002045 838 RSLF 841 (976)
Q Consensus 838 r~~i 841 (976)
....
T Consensus 173 ~i~~ 176 (325)
T COG0470 173 AIAW 176 (325)
T ss_pred HHHH
Confidence 4433
No 435
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.26 E-value=2.6e-06 Score=102.64 Aligned_cols=51 Identities=29% Similarity=0.475 Sum_probs=43.4
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASK 439 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~ 439 (976)
++..|++|+|+++++..|..++.. ..+++|+||||||||++++++++.+..
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 457899999999999988876643 237999999999999999999988754
No 436
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.25 E-value=3e-05 Score=82.64 Aligned_cols=188 Identities=19% Similarity=0.187 Sum_probs=107.6
Q ss_pred ccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecch--hHH-hh
Q 002045 381 IGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA--DVL-SK 457 (976)
Q Consensus 381 i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~--~l~-~~ 457 (976)
|.|+.-+++.|...+...+..+. -+.|..+=|+|++||||.++++.||+.+...|...+|+..-.+ ++. .+
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~ 157 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHAS 157 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChH
Confidence 78888888887777655433221 2345567789999999999999999999877755444311111 110 11
Q ss_pred hHhHHHHHH-HHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCC-----CCcEEEEecCCCcc
Q 002045 458 WVGEAERQL-KLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS-----RGQVVLIGATNRVD 531 (976)
Q Consensus 458 ~~g~~~~~l-~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~-----~~~vivI~atn~~~ 531 (976)
++..-...+ ..+...+..++.+|+++||+|.|- ..++.+|-..++.... ..+.|+|.-+|.-.
T Consensus 158 ~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp-----------~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg 226 (344)
T KOG2170|consen 158 KIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLP-----------PGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGG 226 (344)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceEEechhhhcC-----------HhHHHHHhhhhccccccccccccceEEEEEcCCcc
Confidence 222222222 334455566777899999999984 3455555555552211 12344444444321
Q ss_pred c-----------------------cchhhc-----------------CCCCCccccCCCCCCHHHHHHHHHHHHhcCCCC
Q 002045 532 A-----------------------IDGALR-----------------RPGRFDREFNFPLPGCEARAEILDIHTRKWKQP 571 (976)
Q Consensus 532 ~-----------------------ld~aL~-----------------r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~ 571 (976)
. +.++|. ...+.+..|.|.+.+..-...-++..+.+.++.
T Consensus 227 ~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~el~~rg~~ 306 (344)
T KOG2170|consen 227 SEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRAELRKRGLA 306 (344)
T ss_pred hHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHHHHHHhcccc
Confidence 1 111111 111334455566666666666677777777777
Q ss_pred CCHHHHHHHHHHcc
Q 002045 572 PSRELKSELAASCV 585 (976)
Q Consensus 572 ~~~~~l~~lA~~t~ 585 (976)
.+.+.++.+|....
T Consensus 307 ~d~~~~erva~~l~ 320 (344)
T KOG2170|consen 307 PDQDFVERVANSLS 320 (344)
T ss_pred cchHHHHHHHHhhc
Confidence 77777666666544
No 437
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.24 E-value=6.2e-07 Score=87.91 Aligned_cols=90 Identities=31% Similarity=0.483 Sum_probs=58.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccC
Q 002045 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLA 490 (976)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~ 490 (976)
.....|||+|++||||+++|++|...... ...+|+.+++..+. ..+++.+ .+..|||+++|.|
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~lh~~~~~--~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L- 81 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARALHRYSGR--ANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRL- 81 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHCCHHTTTT--CCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHhhcCc--cCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHC-
Confidence 34567999999999999999999987543 23455556665533 2344444 4559999999998
Q ss_pred CCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCC
Q 002045 491 PVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (976)
Q Consensus 491 ~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn 528 (976)
....+..|+.++.... ..++.+|+++.
T Consensus 82 ----------~~~~Q~~L~~~l~~~~-~~~~RlI~ss~ 108 (138)
T PF14532_consen 82 ----------SPEAQRRLLDLLKRQE-RSNVRLIASSS 108 (138)
T ss_dssp -----------HHHHHHHHHHHHHCT-TTTSEEEEEEC
T ss_pred ----------CHHHHHHHHHHHHhcC-CCCeEEEEEeC
Confidence 4556667777776543 33344444443
No 438
>PRK06921 hypothetical protein; Provisional
Probab=98.24 E-value=1.5e-06 Score=94.75 Aligned_cols=106 Identities=24% Similarity=0.240 Sum_probs=58.6
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc---CCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccch-hHH-
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE---KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNL-WWE- 778 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~---~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~-l~~- 778 (976)
.+++|+|+|||||||||.|||+++. +..++.+...+++... ...-......+... ....+|+|||++. +.+
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l--~~~~~~~~~~~~~~--~~~dlLiIDDl~~~~~g~ 193 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDL--KDDFDLLEAKLNRM--KKVEVLFIDDLFKPVNGK 193 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHH--HHHHHHHHHHHHHh--cCCCEEEEeccccccCCC
Confidence 4699999999999999999999864 4556666655554321 00001111222222 2357999999954 111
Q ss_pred -HHHHHHHHHHHHHHhhCC-CCCCEEEEEecCCCcccCc
Q 002045 779 -NAHEQLRAVLLTLLEELP-SHLPILLLGSSSVPLAEVE 815 (976)
Q Consensus 779 -~~~~~~~~~l~~ll~~~~-~~~~v~vi~ttn~~~~~Ld 815 (976)
...+.....|..+++..- ...+ +|.|||.++..|.
T Consensus 194 e~~t~~~~~~lf~iin~R~~~~k~--tIitsn~~~~el~ 230 (266)
T PRK06921 194 PRATEWQIEQMYSVLNYRYLNHKP--ILISSELTIDELL 230 (266)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCC--EEEECCCCHHHHh
Confidence 112222233333443321 1222 3558888766665
No 439
>PRK15115 response regulator GlrR; Provisional
Probab=98.24 E-value=2.3e-06 Score=100.94 Aligned_cols=167 Identities=22% Similarity=0.307 Sum_probs=103.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhHhHHHHHHHHHHHH---------------HHhcC
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEE---------------AQRNQ 477 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~---------------a~~~~ 477 (976)
...++|+|++|||||++|+++....... ..+|+.++|..+....+.. .+|.. .....
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~--~~~f~~i~c~~~~~~~~~~------~lfg~~~~~~~~~~~~~~g~~~~a~ 228 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRA--SKPFIAINCGALPEQLLES------ELFGHARGAFTGAVSNREGLFQAAE 228 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCC--CCCeEEEeCCCCCHHHHHH------HhcCCCcCCCCCCccCCCCcEEECC
Confidence 4579999999999999999999876533 3578889987653322111 11211 01122
Q ss_pred CcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCC---------CCcEEEEecCCCccccchhhcCCCCCcc---
Q 002045 478 PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS---------RGQVVLIGATNRVDAIDGALRRPGRFDR--- 545 (976)
Q Consensus 478 p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~---------~~~vivI~atn~~~~ld~aL~r~gRf~~--- 545 (976)
..+||||||+.|. ..++..|+..++.-.. ..++.||++|+.. +...+.+ |+|..
T Consensus 229 ~gtl~l~~i~~l~-----------~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~~-~~f~~~l~ 294 (444)
T PRK15115 229 GGTLFLDEIGDMP-----------APLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMAR-GEFREDLY 294 (444)
T ss_pred CCEEEEEccccCC-----------HHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHHc-CCccHHHH
Confidence 3599999999984 4456667777753211 1256788888752 3333332 34421
Q ss_pred ----ccCCCCCCHHHHH----HHHHHHHhc----CC---CCCCHHHHHHHHHHccCCCHHHHHHHHHHHHH
Q 002045 546 ----EFNFPLPGCEARA----EILDIHTRK----WK---QPPSRELKSELAASCVGYCGADLKALCTEAAI 601 (976)
Q Consensus 546 ----~i~~~~P~~~er~----~Il~~~l~~----~~---~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~ 601 (976)
.+.+..|...+|. .++..++.. .+ ..++.+.+..|..+.=.-+.+++++++..|+.
T Consensus 295 ~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~ 365 (444)
T PRK15115 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVA 365 (444)
T ss_pred HhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 3344556665554 343444432 22 24688888888887745577899999888764
No 440
>PF05729 NACHT: NACHT domain
Probab=98.23 E-value=1.6e-05 Score=79.73 Aligned_cols=146 Identities=16% Similarity=0.213 Sum_probs=76.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHhhcCCc----EEEEEecchhHHh------------hhHhHHHHHHHH-HHHHHHhcC
Q 002045 415 GVLLCGPPGTGKTLIARALACAASKAGQK----VSFYMRKGADVLS------------KWVGEAERQLKL-LFEEAQRNQ 477 (976)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~~~~~~----~~~~~~~~~~l~~------------~~~g~~~~~l~~-~f~~a~~~~ 477 (976)
-++|+|+||+|||++++.++..+...... ...+.+...+... .........+.. +...+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 48999999999999999999988765421 1122223222211 101111111111 122233455
Q ss_pred CcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhc-cCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHH
Q 002045 478 PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDG-LDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEA 556 (976)
Q Consensus 478 p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~-~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~e 556 (976)
..+|+||.+|.+...... .........|..++.. ....-+++|.+.+.....+...+.. ...+.+...+.++
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQ----AQILELEPFSEED 154 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCC----CcEEEECCCCHHH
Confidence 679999999999753222 1112233333344443 1222233332222222122222222 1468889999999
Q ss_pred HHHHHHHHHhc
Q 002045 557 RAEILDIHTRK 567 (976)
Q Consensus 557 r~~Il~~~l~~ 567 (976)
..++++.+++.
T Consensus 155 ~~~~~~~~f~~ 165 (166)
T PF05729_consen 155 IKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHhhc
Confidence 99999888753
No 441
>PRK09183 transposase/IS protein; Provisional
Probab=98.23 E-value=7e-07 Score=96.99 Aligned_cols=108 Identities=16% Similarity=0.204 Sum_probs=63.0
Q ss_pred CceeeccCCCCcHhhHHHHHHHhh--cCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHEL--EKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAH 781 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l--~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~~ 781 (976)
.+++|+|||||||||||.+|++.+ .+..+..++..+++..+........+..+|... ...+.+|+|||+..+....
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~~~~- 180 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLPFSQ- 180 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCCCCh-
Confidence 469999999999999999998763 344566666666553321111111234455443 2457899999998753221
Q ss_pred HHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcC
Q 002045 782 EQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEG 816 (976)
Q Consensus 782 ~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~ 816 (976)
.....|..+++..-.... +|.|||.++..+..
T Consensus 181 -~~~~~lf~li~~r~~~~s--~iiTsn~~~~~w~~ 212 (259)
T PRK09183 181 -EEANLFFQVIAKRYEKGS--MILTSNLPFGQWDQ 212 (259)
T ss_pred -HHHHHHHHHHHHHHhcCc--EEEecCCCHHHHHH
Confidence 112234444433221222 46688988665544
No 442
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.22 E-value=4.1e-06 Score=85.55 Aligned_cols=81 Identities=21% Similarity=0.283 Sum_probs=56.8
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcC----CCeeecCCcccccCCCCCChHHHHHHHHHHHHhcC-C---ceEeccccch
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEK----FPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTT-P---SILYIPQFNL 775 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~----~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~-p---~ilfiDEid~ 775 (976)
|+++|.||||||||+.+.++|++|-| -.++.++.++-.+ =..-.+-.+.|..-+-.- | .|+++||+|+
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRG----IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADS 124 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERG----IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADS 124 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccc----cHHHHHHHHHHHHhhccCCCCceeEEEeeccch
Confidence 48999999999999999999999745 2356666554331 122233444565444333 3 4999999999
Q ss_pred hHHHHHHHHHHHH
Q 002045 776 WWENAHEQLRAVL 788 (976)
Q Consensus 776 l~~~~~~~~~~~l 788 (976)
+-.+++..+.+++
T Consensus 125 MT~gAQQAlRRtM 137 (333)
T KOG0991|consen 125 MTAGAQQALRRTM 137 (333)
T ss_pred hhhHHHHHHHHHH
Confidence 9988888777665
No 443
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.22 E-value=1.3e-06 Score=89.43 Aligned_cols=104 Identities=24% Similarity=0.368 Sum_probs=59.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhHhHH-HHHHHHHHHHHHhcCCcEEEEcccccc
Q 002045 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEA-ERQLKLLFEEAQRNQPSIIFFDEIDGL 489 (976)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~g~~-~~~l~~~f~~a~~~~p~VL~iDEid~L 489 (976)
....+++|+||||||||+||.++++++...++.+.| ++..+++...-... ......++.... ...+|+|||+...
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f--~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~ 120 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLF--ITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYE 120 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEE--EEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeE--eecCceeccccccccccchhhhcCccc--cccEeccccccee
Confidence 345799999999999999999999999887766655 45566665432110 011223333333 3469999999533
Q ss_pred CCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCC
Q 002045 490 APVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (976)
Q Consensus 490 ~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~ 529 (976)
. ........|+.+++.-... . .+|.|||.
T Consensus 121 ~---------~~~~~~~~l~~ii~~R~~~-~-~tIiTSN~ 149 (178)
T PF01695_consen 121 P---------LSEWEAELLFEIIDERYER-K-PTIITSNL 149 (178)
T ss_dssp ------------HHHHHCTHHHHHHHHHT---EEEEEESS
T ss_pred e---------ecccccccchhhhhHhhcc-c-CeEeeCCC
Confidence 1 1222334455555543333 2 34447776
No 444
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.22 E-value=1.7e-06 Score=105.88 Aligned_cols=169 Identities=18% Similarity=0.114 Sum_probs=93.7
Q ss_pred cccChHHHHHHHHHHHHcccCChhHHh--------hcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC--cEEEEEe
Q 002045 380 DIGGLSEYIDALKEMVFFPLLYPDFFA--------SYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ--KVSFYMR 449 (976)
Q Consensus 380 ~i~G~~~~k~~l~~~v~~pl~~~~~~~--------~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~--~~~~~~~ 449 (976)
.|.|++.+|..|.-.+.--......+. ...++...+|||+|.||||||.+|+++++......+ ...+..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 478888888777544422110000000 012344569999999999999999999986532210 0122222
Q ss_pred cchhHHh-h--hHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC----------
Q 002045 450 KGADVLS-K--WVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD---------- 516 (976)
Q Consensus 450 ~~~~l~~-~--~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~---------- 516 (976)
.+..... . ..|+.. .-...+..| ...+++|||++.|. ...+..|+.+|+.-.
T Consensus 531 gLTa~~~~~d~~tG~~~-le~GaLvlA---dgGtL~IDEidkms-----------~~~Q~aLlEaMEqqtIsI~KaGi~~ 595 (915)
T PTZ00111 531 GLTASIKFNESDNGRAM-IQPGAVVLA---NGGVCCIDELDKCH-----------NESRLSLYEVMEQQTVTIAKAGIVA 595 (915)
T ss_pred cccchhhhcccccCccc-ccCCcEEEc---CCCeEEecchhhCC-----------HHHHHHHHHHHhCCEEEEecCCcce
Confidence 2222111 0 001000 000011112 23499999999883 455667777775321
Q ss_pred -CCCcEEEEecCCCcc-------------ccchhhcCCCCCccccC-CCCCCHHHHHHHHHHHH
Q 002045 517 -SRGQVVLIGATNRVD-------------AIDGALRRPGRFDREFN-FPLPGCEARAEILDIHT 565 (976)
Q Consensus 517 -~~~~vivI~atn~~~-------------~ld~aL~r~gRf~~~i~-~~~P~~~er~~Il~~~l 565 (976)
-...+.||+|+|+.. .|+++|++ ||+.++. ++.|+.+.=..|..+.+
T Consensus 596 tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 596 TLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred ecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHHHH
Confidence 124688999999852 26788999 9987654 46677655555544444
No 445
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.22 E-value=8.2e-07 Score=105.27 Aligned_cols=63 Identities=38% Similarity=0.596 Sum_probs=61.1
Q ss_pred cccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcC
Q 002045 913 DKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTC 975 (976)
Q Consensus 913 ~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~ 975 (976)
..+.++|..+|+...+|+|+.+|+.||||.|+.+|+..+.|.+.++|..|+.+||.||.+||-
T Consensus 301 ~~~s~~~~~kvs~~~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ 363 (720)
T KOG1472|consen 301 TEHSTPFLEKVSKEDAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNS 363 (720)
T ss_pred cccccccccCCChhhCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhcc
Confidence 567899999999999999999999999999999999999999999999999999999999995
No 446
>PF13173 AAA_14: AAA domain
Probab=98.21 E-value=4.7e-06 Score=80.54 Aligned_cols=122 Identities=14% Similarity=0.138 Sum_probs=69.2
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc-CCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE-KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHE 782 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~-~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~~~ 782 (976)
+-++|+||.|||||++++.+++.+. .-.++.+++....... .....+.+.+.......+.+||||||+.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~----- 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRR---LADPDLLEYFLELIKPGKKYIFIDEIQYLP----- 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHH---HhhhhhHHHHHHhhccCCcEEEEehhhhhc-----
Confidence 3489999999999999999998763 2456666654432210 000002222222222256899999999873
Q ss_pred HHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCc-cEEEecCCCHHH
Q 002045 783 QLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLR-SVYQVEKPSTED 837 (976)
Q Consensus 783 ~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r-~~i~v~~P~~~e 837 (976)
.+...+..+++.. ..+-||.|++.. ..+.........+| ..+++.+.+..|
T Consensus 75 ~~~~~lk~l~d~~---~~~~ii~tgS~~-~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 75 DWEDALKFLVDNG---PNIKIILTGSSS-SLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred cHHHHHHHHHHhc---cCceEEEEccch-HHHhhcccccCCCeEEEEEECCCCHHH
Confidence 2334455555533 233344444444 23322234455555 567788887765
No 447
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.21 E-value=3.8e-06 Score=90.94 Aligned_cols=183 Identities=18% Similarity=0.237 Sum_probs=100.6
Q ss_pred CCceeeccCCCCcHhhHHHHHHHhh--------cCCCeeecCCccc--------------ccCCCCC-ChHHHHHHHHHH
Q 002045 703 RPRLLLCGSEGTGVDHLGPAILHEL--------EKFPVHSLGLPAL--------------LSDPSAK-TPEEALVHIFGE 759 (976)
Q Consensus 703 ~~~~Ll~G~pGtGKT~lA~aia~~l--------~~~~~~~~~~~~l--------------~~~~~~g-~~e~~~~~~f~~ 759 (976)
.+++||+|++|.|||++++.+.... ..+|++.+.++.- ...+... ...+.-.+++..
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~l 140 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRL 140 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHH
Confidence 3689999999999999999998641 1257777776421 1111111 222233335566
Q ss_pred HHhcCCceEeccccchhHHHHHHHHHHHHHHHHhhCCC--CCCEEEEEecCCCcccCcC--CCCCCcCCccEEEecCCCH
Q 002045 760 ARRTTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPS--HLPILLLGSSSVPLAEVEG--DPSTVFPLRSVYQVEKPST 835 (976)
Q Consensus 760 a~~~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~--~~~v~vi~ttn~~~~~Ld~--~~~~~~~~r~~i~v~~P~~ 835 (976)
.+..++-+|+||||+.++.+.... ...++.+|..+.+ .-+++.+||-..- ..|.. .++.+|. .+.++.-..
T Consensus 141 lr~~~vrmLIIDE~H~lLaGs~~~-qr~~Ln~LK~L~NeL~ipiV~vGt~~A~-~al~~D~QLa~RF~---~~~Lp~W~~ 215 (302)
T PF05621_consen 141 LRRLGVRMLIIDEFHNLLAGSYRK-QREFLNALKFLGNELQIPIVGVGTREAY-RALRTDPQLASRFE---PFELPRWEL 215 (302)
T ss_pred HHHcCCcEEEeechHHHhcccHHH-HHHHHHHHHHHhhccCCCeEEeccHHHH-HHhccCHHHHhccC---CccCCCCCC
Confidence 677888999999999987553322 2334445555443 3456666654332 33322 4556665 333443222
Q ss_pred -HHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHH-HHHHHHHHh
Q 002045 836 -EDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPKASELKAKV-EAEQHALRR 898 (976)
Q Consensus 836 -~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~sg~s~aelk~~~-ea~~~alre 898 (976)
++-..++..+-. . +| .+......-+.|+...-.-++....++.++. .++..|++.
T Consensus 216 d~ef~~LL~s~e~-~--LP-----Lr~~S~l~~~~la~~i~~~s~G~iG~l~~ll~~aA~~AI~s 272 (302)
T PF05621_consen 216 DEEFRRLLASFER-A--LP-----LRKPSNLASPELARRIHERSEGLIGELSRLLNAAAIAAIRS 272 (302)
T ss_pred CcHHHHHHHHHHH-h--CC-----CCCCCCCCCHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhc
Confidence 222333322222 1 22 2223334444555444333444556888888 888888875
No 448
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.20 E-value=4.8e-05 Score=86.92 Aligned_cols=212 Identities=13% Similarity=0.126 Sum_probs=106.4
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEE----EE--
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVS----FY-- 447 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~----~~-- 447 (976)
.+.+.++|.=...-+.+|+.++.. ..+...+ -..+-+||+||+||||||+++.|+++++-...+.. +.
T Consensus 77 ~P~t~eeLAVHkkKI~eVk~WL~~---~~~~~~~---l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~ 150 (634)
T KOG1970|consen 77 KPRTLEELAVHKKKISEVKQWLKQ---VAEFTPK---LGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEP 150 (634)
T ss_pred CcccHHHHhhhHHhHHHHHHHHHH---HHHhccC---CCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCcccccc
Confidence 345677777766667777777651 0111111 22456899999999999999999999974331111 00
Q ss_pred --EecchhHHhhhHhHHHHHHHHHHHHHH------------hcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhh
Q 002045 448 --MRKGADVLSKWVGEAERQLKLLFEEAQ------------RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMD 513 (976)
Q Consensus 448 --~~~~~~l~~~~~g~~~~~l~~~f~~a~------------~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld 513 (976)
.-+-+.+....+...-.....+...+. ...+.+|+|||+-..+... ....+..+|.++-
T Consensus 151 ~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d-------~~~~f~evL~~y~ 223 (634)
T KOG1970|consen 151 ENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD-------DSETFREVLRLYV 223 (634)
T ss_pred ccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh-------hHHHHHHHHHHHH
Confidence 000011111111111112222222221 1235699999996554221 1222222333322
Q ss_pred ccCCCCcEEEEecCCCccccchhhcCC------CCCccccCCCCCCHHHHHHHHHHHHhcCCCCCC------HHHHHHHH
Q 002045 514 GLDSRGQVVLIGATNRVDAIDGALRRP------GRFDREFNFPLPGCEARAEILDIHTRKWKQPPS------RELKSELA 581 (976)
Q Consensus 514 ~~~~~~~vivI~atn~~~~ld~aL~r~------gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~------~~~l~~lA 581 (976)
......-|+||.-+..++..++..+.+ .|. ..|.|.+-...-....|+..+........ ...++.++
T Consensus 224 s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~ 302 (634)
T KOG1970|consen 224 SIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELIC 302 (634)
T ss_pred hcCCCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHH
Confidence 212222233333333333333222211 133 35778777777777788777766544433 33345555
Q ss_pred HHccCCCHHHHHHHHHHHHHHH
Q 002045 582 ASCVGYCGADLKALCTEAAIRA 603 (976)
Q Consensus 582 ~~t~G~s~~dI~~l~~~A~~~a 603 (976)
..+. +||+.+++...+.+
T Consensus 303 ~~s~----GDIRsAInsLQlss 320 (634)
T KOG1970|consen 303 QGSG----GDIRSAINSLQLSS 320 (634)
T ss_pred HhcC----ccHHHHHhHhhhhc
Confidence 5554 48888877665554
No 449
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.20 E-value=1.4e-06 Score=97.48 Aligned_cols=105 Identities=19% Similarity=0.181 Sum_probs=62.3
Q ss_pred CceeeccCCCCcHhhHHHHHHHhh--cCCCeeecCCcccccCCCCC--ChHHHHHHHHHHHHhcCCceEeccccchhHH-
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHEL--EKFPVHSLGLPALLSDPSAK--TPEEALVHIFGEARRTTPSILYIPQFNLWWE- 778 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l--~~~~~~~~~~~~l~~~~~~g--~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~- 778 (976)
.+++|+|++||||||||.|||+++ .+..++.+..++++...... .........+.... ...+|+||++.....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~~t 261 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEKIT 261 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCCCC
Confidence 479999999999999999999985 24567777776665432000 00001111133322 347999999977642
Q ss_pred -HHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCc
Q 002045 779 -NAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVE 815 (976)
Q Consensus 779 -~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld 815 (976)
.....+...|...+.. ... +|.|||.++..|.
T Consensus 262 ~~~~~~Lf~iin~R~~~---~k~--tIiTSNl~~~el~ 294 (329)
T PRK06835 262 EFSKSELFNLINKRLLR---QKK--MIISTNLSLEELL 294 (329)
T ss_pred HHHHHHHHHHHHHHHHC---CCC--EEEECCCCHHHHH
Confidence 2334444444444432 112 4568888766654
No 450
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.20 E-value=9.2e-07 Score=94.64 Aligned_cols=107 Identities=16% Similarity=0.222 Sum_probs=64.5
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcccccCCCC--CChHHHHHHHHHHHHhcCCceEeccccchhHHHH
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPSA--KTPEEALVHIFGEARRTTPSILYIPQFNLWWENA 780 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~~~~~--g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~ 780 (976)
+++|+|+||||||+||.+||+.+. +..++.+..++++..... .........++.... ..+||+|||+......
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~s- 177 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTES- 177 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCCC-
Confidence 699999999999999999999863 456777777776642100 011112233444433 4689999999886522
Q ss_pred HHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcC
Q 002045 781 HEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEG 816 (976)
Q Consensus 781 ~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~ 816 (976)
+.-...|..+++.-- ....-+|.|||..+..|..
T Consensus 178 -~~~~~~l~~Ii~~Ry-~~~~~tiitSNl~~~~l~~ 211 (244)
T PRK07952 178 -RYEKVIINQIVDRRS-SSKRPTGMLTNSNMEEMTK 211 (244)
T ss_pred -HHHHHHHHHHHHHHH-hCCCCEEEeCCCCHHHHHH
Confidence 222334445554321 1122345588887565543
No 451
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.19 E-value=1e-05 Score=95.89 Aligned_cols=195 Identities=24% Similarity=0.273 Sum_probs=112.6
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHh
Q 002045 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS 456 (976)
Q Consensus 377 ~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~ 456 (976)
.+..++|.......+.+.+.. . ......+|++|++||||+++|+++....... ..+|+.++|..+..
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~----------~-a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~--~~~~~~i~c~~~~~ 207 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAK----------I-ALSQASVLISGESGTGKELIARAIHYNSRRA--KGPFIKVNCAALPE 207 (457)
T ss_pred cccceecccHHHhHHHHHHHH----------H-cCCCcEEEEEcCCCccHHHHHHHHHHhCCCC--CCCeEEEECCCCCH
Confidence 344577766665555444322 1 1334679999999999999999998765432 35788888876533
Q ss_pred hhH-----hHHHHH-------HHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC-----C--
Q 002045 457 KWV-----GEAERQ-------LKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-----S-- 517 (976)
Q Consensus 457 ~~~-----g~~~~~-------l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~-----~-- 517 (976)
..+ |..... ....|..+ ...+||||||+.|. ..++..|+..++... .
T Consensus 208 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ld~i~~l~-----------~~~q~~L~~~l~~~~~~~~~~~~ 273 (457)
T PRK11361 208 SLLESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLLDEIGEMP-----------LVLQAKLLRILQEREFERIGGHQ 273 (457)
T ss_pred HHHHHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEEechhhCC-----------HHHHHHHHHHHhcCcEEeCCCCc
Confidence 211 110000 00112222 23599999999984 445667777775321 0
Q ss_pred --CCcEEEEecCCCccccchhhcCCCCCcc-------ccCCCCCCHHHHHH----HHHHHHhcC----C---CCCCHHHH
Q 002045 518 --RGQVVLIGATNRVDAIDGALRRPGRFDR-------EFNFPLPGCEARAE----ILDIHTRKW----K---QPPSRELK 577 (976)
Q Consensus 518 --~~~vivI~atn~~~~ld~aL~r~gRf~~-------~i~~~~P~~~er~~----Il~~~l~~~----~---~~~~~~~l 577 (976)
..++.||++|+..- . .+...|+|.. .+.+..|...+|.+ ++..++... + ..++.+.+
T Consensus 274 ~~~~~~rii~~t~~~l--~-~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~ 350 (457)
T PRK11361 274 TIKVDIRIIAATNRDL--Q-AMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAM 350 (457)
T ss_pred eeeeceEEEEeCCCCH--H-HHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 12467888887631 1 1222233322 34455666655543 333333321 1 34677777
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHH
Q 002045 578 SELAASCVGYCGADLKALCTEAAI 601 (976)
Q Consensus 578 ~~lA~~t~G~s~~dI~~l~~~A~~ 601 (976)
..|..+.=--+-+++++++..|+.
T Consensus 351 ~~L~~~~wpgNv~eL~~~~~~~~~ 374 (457)
T PRK11361 351 SLLTAWSWPGNIRELSNVIERAVV 374 (457)
T ss_pred HHHHcCCCCCcHHHHHHHHHHHHH
Confidence 777776655577899998888764
No 452
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.19 E-value=2.6e-05 Score=102.26 Aligned_cols=183 Identities=25% Similarity=0.331 Sum_probs=103.9
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEe---cc
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR---KG 451 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~---~~ 451 (976)
...+++++|++..+++|..++.. .....+-|-|+|++|+||||+|+++++.+........|+.. ..
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l-----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHL-----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred CcccccccchHHHHHHHHHHHcc-----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 44577899999999999887643 22445678999999999999999999888654422222210 00
Q ss_pred h-hHHh--------hhHhHHHHHHH-------------HHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHH
Q 002045 452 A-DVLS--------KWVGEAERQLK-------------LLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLL 509 (976)
Q Consensus 452 ~-~l~~--------~~~g~~~~~l~-------------~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll 509 (976)
. .... ....-....+. ..+......++.+|+||+++.. .++..|.
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~-------------~~l~~L~ 315 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ-------------DVLDALA 315 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH-------------HHHHHHH
Confidence 0 0000 00000001111 1122223355779999998632 2333443
Q ss_pred HHhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHccCC
Q 002045 510 ALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPS--RELKSELAASCVGY 587 (976)
Q Consensus 510 ~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~--~~~l~~lA~~t~G~ 587 (976)
...+.. ..+..||| ||.... +.+....+.++.++.|+.++..+++..++........ .++...++..+.|+
T Consensus 316 ~~~~~~-~~GsrIIi-TTrd~~-----vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GL 388 (1153)
T PLN03210 316 GQTQWF-GSGSRIIV-ITKDKH-----FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNL 388 (1153)
T ss_pred hhCccC-CCCcEEEE-EeCcHH-----HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCC
Confidence 333321 23344444 555432 2221235678899999999999999887754432221 13345677778776
Q ss_pred C
Q 002045 588 C 588 (976)
Q Consensus 588 s 588 (976)
.
T Consensus 389 P 389 (1153)
T PLN03210 389 P 389 (1153)
T ss_pred c
Confidence 5
No 453
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.18 E-value=1.3e-06 Score=94.45 Aligned_cols=103 Identities=25% Similarity=0.265 Sum_probs=65.1
Q ss_pred CCceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcccccCCC----CCChHHHHHHHHHHHHhcCCceEeccccchh
Q 002045 703 RPRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPS----AKTPEEALVHIFGEARRTTPSILYIPQFNLW 776 (976)
Q Consensus 703 ~~~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~~~~----~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l 776 (976)
+.+++|+|+||||||+||-||++++. +..++.+..++++...- .|..+..+... . ....||+|||+-..
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~---l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE---L--KKVDLLIIDDIGYE 179 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH---h--hcCCEEEEecccCc
Confidence 35799999999999999999999853 35677777777765321 12323333222 2 23479999999986
Q ss_pred HHH--HHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcC
Q 002045 777 WEN--AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEG 816 (976)
Q Consensus 777 ~~~--~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~ 816 (976)
... ....+..++..... .. .. |.|+|.++..+..
T Consensus 180 ~~~~~~~~~~~q~I~~r~~---~~-~~--~~tsN~~~~~~~~ 215 (254)
T COG1484 180 PFSQEEADLLFQLISRRYE---SR-SL--IITSNLSFGEWDE 215 (254)
T ss_pred cCCHHHHHHHHHHHHHHHh---hc-cc--eeecCCChHHHHh
Confidence 532 33333333333332 22 22 7799999776665
No 454
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.17 E-value=6.3e-06 Score=97.81 Aligned_cols=196 Identities=20% Similarity=0.203 Sum_probs=115.5
Q ss_pred ccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhh
Q 002045 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKW 458 (976)
Q Consensus 379 ~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~ 458 (976)
..++|.......+...+.. + ......+++.|.+||||+++|+++....... ..+|+.++|..+...+
T Consensus 134 ~~lig~s~~~~~v~~~i~~-~----------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~--~~~~~~~~c~~~~~~~ 200 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGR-L----------SRSDITVLINGESGTGKELVARALHRHSPRA--NGPFIALNMAAIPKDL 200 (463)
T ss_pred cceeecCHHHHHHHHHHHH-H----------hCcCCeEEEECCCCCCHHHHHHHHHHhCCCC--CCCeEEEeCCCCCHHH
Confidence 3578877776666555432 0 1334579999999999999999998865432 4678888887653322
Q ss_pred H-----hHHHH----HH---HHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC---------C
Q 002045 459 V-----GEAER----QL---KLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD---------S 517 (976)
Q Consensus 459 ~-----g~~~~----~l---~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~---------~ 517 (976)
+ |.... .. ...|. .....+||||||+.|. ..++..|+..++... .
T Consensus 201 ~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~ei~~l~-----------~~~q~~ll~~l~~~~~~~~~~~~~~ 266 (463)
T TIGR01818 201 IESELFGHEKGAFTGANTRRQGRFE---QADGGTLFLDEIGDMP-----------LDAQTRLLRVLADGEFYRVGGRTPI 266 (463)
T ss_pred HHHHhcCCCCCCCCCcccCCCCcEE---ECCCCeEEEEchhhCC-----------HHHHHHHHHHHhcCcEEECCCCcee
Confidence 1 11000 00 00111 1224689999999884 345666777765321 0
Q ss_pred CCcEEEEecCCCcc-------ccchhhcCCCCCc-cccCCCCCC--HHHHHHHHHHHHhcC----C---CCCCHHHHHHH
Q 002045 518 RGQVVLIGATNRVD-------AIDGALRRPGRFD-REFNFPLPG--CEARAEILDIHTRKW----K---QPPSRELKSEL 580 (976)
Q Consensus 518 ~~~vivI~atn~~~-------~ld~aL~r~gRf~-~~i~~~~P~--~~er~~Il~~~l~~~----~---~~~~~~~l~~l 580 (976)
..++.||++|+..- .+.+.|.. |+. ..|.+|+.. .++...++..++... + ..++.+.+..|
T Consensus 267 ~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 344 (463)
T TIGR01818 267 KVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERL 344 (463)
T ss_pred eeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHH
Confidence 12456777776521 12223332 332 355666654 455666666554432 2 34677887777
Q ss_pred HHHccCCCHHHHHHHHHHHHHHH
Q 002045 581 AASCVGYCGADLKALCTEAAIRA 603 (976)
Q Consensus 581 A~~t~G~s~~dI~~l~~~A~~~a 603 (976)
..+.=--+-++|++++..|+..+
T Consensus 345 ~~~~wpgNvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 345 KQLRWPGNVRQLENLCRWLTVMA 367 (463)
T ss_pred HhCCCCChHHHHHHHHHHHHHhC
Confidence 77644345689999998877543
No 455
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.15 E-value=4.1e-06 Score=80.92 Aligned_cols=99 Identities=20% Similarity=0.319 Sum_probs=59.0
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc-------CCCeeecCCcccc-------------cCCCC--CChHHHHHHHHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE-------KFPVHSLGLPALL-------------SDPSA--KTPEEALVHIFGEAR 761 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~-------~~~~~~~~~~~l~-------------~~~~~--g~~e~~~~~~f~~a~ 761 (976)
..++++|+||+|||++++.++..+. ..+++.+.++... ..... .........+.+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 3589999999999999999999864 4556666553221 11111 123334444555555
Q ss_pred hcCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEec
Q 002045 762 RTTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSS 807 (976)
Q Consensus 762 ~~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~tt 807 (976)
.....+|+|||+|.+. ...+++.|..+++ ...-.++++|+.
T Consensus 85 ~~~~~~lviDe~~~l~---~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF---SDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HCTEEEEEEETTHHHH---THHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred hcCCeEEEEeChHhcC---CHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 5544599999999976 3555555555554 334455666554
No 456
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.15 E-value=1.7e-06 Score=102.09 Aligned_cols=135 Identities=19% Similarity=0.214 Sum_probs=85.0
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcccccCCCCCChHHHHH-HHHH---------------HHHhcCCc
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPSAKTPEEALV-HIFG---------------EARRTTPS 766 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~~~~~g~~e~~~~-~~f~---------------~a~~~~p~ 766 (976)
.++|+|++||||+++|+++..... ..+|+.++|..+-. ..+. .+|. ......++
T Consensus 164 ~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~--------~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 235 (445)
T TIGR02915 164 TVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPE--------NLLESELFGYEKGAFTGAVKQTLGKIEYAHGG 235 (445)
T ss_pred CEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCCh--------HHHHHHhcCCCCCCcCCCccCCCCceeECCCC
Confidence 489999999999999999988743 35899999876521 1111 1121 01123467
Q ss_pred eEeccccchhHHHHHHHHHHHHHHHH-hhCCC----CCCEEEEEecCCCcccCcCCCCCCcCC----c-cEEEecCCCHH
Q 002045 767 ILYIPQFNLWWENAHEQLRAVLLTLL-EELPS----HLPILLLGSSSVPLAEVEGDPSTVFPL----R-SVYQVEKPSTE 836 (976)
Q Consensus 767 ilfiDEid~l~~~~~~~~~~~l~~ll-~~~~~----~~~v~vi~ttn~~~~~Ld~~~~~~~~~----r-~~i~v~~P~~~ 836 (976)
+||||||+.|....+..+++.|..-. ..+.. ..++.||+||+.....+-. ...|+. + ..+.|..|...
T Consensus 236 tl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~--~~~~~~~L~~~l~~~~i~lPpLr 313 (445)
T TIGR02915 236 TLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIA--EGTFREDLFYRIAEISITIPPLR 313 (445)
T ss_pred EEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHH--cCCccHHHHHHhccceecCCCch
Confidence 99999999999887777655443211 11111 2367888898877333322 333332 2 56778999999
Q ss_pred HHHHHHHHHHHHH
Q 002045 837 DRSLFLGRLIEAA 849 (976)
Q Consensus 837 er~~i~~~~l~~~ 849 (976)
+|.+-+..++..+
T Consensus 314 ~R~~Di~~l~~~~ 326 (445)
T TIGR02915 314 SRDGDAVLLANAF 326 (445)
T ss_pred hchhhHHHHHHHH
Confidence 9987544444433
No 457
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.15 E-value=5.6e-06 Score=92.84 Aligned_cols=77 Identities=18% Similarity=0.154 Sum_probs=50.4
Q ss_pred CCceEeccccchhHHHHHHHHHHHHHHHHhhC-----------CCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecC
Q 002045 764 TPSILYIPQFNLWWENAHEQLRAVLLTLLEEL-----------PSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEK 832 (976)
Q Consensus 764 ~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~-----------~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~ 832 (976)
...+||||||+.+.+..+..++. .|+.- ....++++|+|.|-....|.+ +.+.++...+.+..
T Consensus 131 ~~GvL~lDEi~~L~~~~Q~~Ll~----~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~--~LldRf~l~i~l~~ 204 (337)
T TIGR02030 131 NRGILYIDEVNLLEDHLVDVLLD----VAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRP--QLLDRFGLHAEIRT 204 (337)
T ss_pred cCCEEEecChHhCCHHHHHHHHH----HHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCH--HHHhhcceEEECCC
Confidence 35799999999987766665444 44321 113468888888754334665 44444446777777
Q ss_pred CCH-HHHHHHHHHHH
Q 002045 833 PST-EDRSLFLGRLI 846 (976)
Q Consensus 833 P~~-~er~~i~~~~l 846 (976)
|.. ++|.+|++...
T Consensus 205 p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 205 VRDVELRVEIVERRT 219 (337)
T ss_pred CCCHHHHHHHHHhhh
Confidence 765 88999998643
No 458
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=9.8e-06 Score=87.14 Aligned_cols=76 Identities=21% Similarity=0.296 Sum_probs=55.8
Q ss_pred CceEeccccchhHHHH--------HHHHHHHHHHHHhhC--------CCCCCEEEEEecC----CCcccCcCCCCCCcCC
Q 002045 765 PSILYIPQFNLWWENA--------HEQLRAVLLTLLEEL--------PSHLPILLLGSSS----VPLAEVEGDPSTVFPL 824 (976)
Q Consensus 765 p~ilfiDEid~l~~~~--------~~~~~~~l~~ll~~~--------~~~~~v~vi~ttn----~~~~~Ld~~~~~~~~~ 824 (976)
-+|+||||||+++... .+.+.+-|+-++.+. -....|++||+.- .| .+|-|.+.++|+
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKP-SDLiPELQGRfP- 328 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKP-SDLIPELQGRFP- 328 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCCh-hhcChhhcCCCc-
Confidence 4799999999998431 234566677777653 1256789998753 45 556667999999
Q ss_pred ccEEEecCCCHHHHHHHHH
Q 002045 825 RSVYQVEKPSTEDRSLFLG 843 (976)
Q Consensus 825 r~~i~v~~P~~~er~~i~~ 843 (976)
..+++...+.++-.+||.
T Consensus 329 -IRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 329 -IRVELDALTKEDFERILT 346 (444)
T ss_pred -eEEEcccCCHHHHHHHHc
Confidence 668888999999888885
No 459
>PF13173 AAA_14: AAA domain
Probab=98.14 E-value=1.1e-05 Score=77.99 Aligned_cols=71 Identities=27% Similarity=0.344 Sum_probs=43.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEcccccc
Q 002045 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGL 489 (976)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L 489 (976)
+.++|+||.|||||++++.+++.+. .. -.++.++..+.......... +...+.......+.+||||||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~--~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PP--ENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-cc--ccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 4689999999999999999998875 11 23444444443321111111 222222222225679999999877
No 460
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.12 E-value=1.5e-05 Score=77.02 Aligned_cols=91 Identities=21% Similarity=0.364 Sum_probs=53.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcC---CcEEEEEecchhHH------hhhH----------hHHHHHHHHHHHHH
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAASKAG---QKVSFYMRKGADVL------SKWV----------GEAERQLKLLFEEA 473 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~---~~~~~~~~~~~~l~------~~~~----------g~~~~~l~~~f~~a 473 (976)
.+.++|+||||+|||++++.++..+.... ....++.+++.... .... .........+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 46799999999999999999999885320 02455555553322 1110 01233334444555
Q ss_pred HhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhh
Q 002045 474 QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMD 513 (976)
Q Consensus 474 ~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld 513 (976)
......+|+|||+|.|. ...++..|..+++
T Consensus 84 ~~~~~~~lviDe~~~l~----------~~~~l~~l~~l~~ 113 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF----------SDEFLEFLRSLLN 113 (131)
T ss_dssp HHCTEEEEEEETTHHHH----------THHHHHHHHHHTC
T ss_pred HhcCCeEEEEeChHhcC----------CHHHHHHHHHHHh
Confidence 55545599999999874 1455666666666
No 461
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.12 E-value=2.2e-06 Score=101.88 Aligned_cols=173 Identities=17% Similarity=0.242 Sum_probs=98.7
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcccccCCCCCChHHHHHHHHHH---------------HHhcCCce
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPSAKTPEEALVHIFGE---------------ARRTTPSI 767 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~---------------a~~~~p~i 767 (976)
.+||.|++|||||++|++|++... ..+|+.++|+.+-... .-..+|.. .....++.
T Consensus 163 ~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~-------~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gt 235 (469)
T PRK10923 163 SVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL-------IESELFGHEKGAFTGANTIRQGRFEQADGGT 235 (469)
T ss_pred eEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH-------HHHHhcCCCCCCCCCCCcCCCCCeeECCCCE
Confidence 499999999999999999999753 3689999987652110 01112211 11233578
Q ss_pred EeccccchhHHHHHHHHHHHHHHH-HhhCCC----CCCEEEEEecCCCcccCcCCCCCCcCC----c-cEEEecCCCHHH
Q 002045 768 LYIPQFNLWWENAHEQLRAVLLTL-LEELPS----HLPILLLGSSSVPLAEVEGDPSTVFPL----R-SVYQVEKPSTED 837 (976)
Q Consensus 768 lfiDEid~l~~~~~~~~~~~l~~l-l~~~~~----~~~v~vi~ttn~~~~~Ld~~~~~~~~~----r-~~i~v~~P~~~e 837 (976)
||||||+.|....+..++..|.+- +..+.. ...+-||+||+.....+-. ...|+. + ..+.|..|...+
T Consensus 236 l~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~--~~~~~~~L~~~l~~~~i~~PpLre 313 (469)
T PRK10923 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQ--EGKFREDLFHRLNVIRVHLPPLRE 313 (469)
T ss_pred EEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHH--cCCchHHHHHHhcceeecCCCccc
Confidence 999999999887777655544211 001111 2356888898876333222 333332 2 467788999888
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCC--CCCCCCCCCCCCCCCCCCCchhHHHHHH
Q 002045 838 RSLFLGRLIEAAVSVVLEGRSKKP--QESVSLPELPKVPTVESGPKASELKAKV 889 (976)
Q Consensus 838 r~~i~~~~l~~~~~~~~~~~~~~~--~~~~dl~~La~~~~~~sg~s~aelk~~~ 889 (976)
|.+-+..++..++.......+... .....+..|.... |+| ...||++++
T Consensus 314 R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~--wpg-Nv~eL~~~i 364 (469)
T PRK10923 314 RREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLA--WPG-NVRQLENTC 364 (469)
T ss_pred chhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCC--CCC-hHHHHHHHH
Confidence 887555555544332222111111 1222333344333 555 566777766
No 462
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.12 E-value=1.2e-06 Score=97.29 Aligned_cols=107 Identities=17% Similarity=0.217 Sum_probs=61.9
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAH 781 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~~ 781 (976)
.|++|+|++|||||+||.|||+++. +.++..+..+.++......-....+...+.... ...||+|||+..-.. +
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~~--s 232 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQM--S 232 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCccc--c
Confidence 5899999999999999999999863 355666666666543210000011233344333 357999999986432 2
Q ss_pred HHHHHHH-HHHHhh-CCCCCCEEEEEecCCCcccCcC
Q 002045 782 EQLRAVL-LTLLEE-LPSHLPILLLGSSSVPLAEVEG 816 (976)
Q Consensus 782 ~~~~~~l-~~ll~~-~~~~~~v~vi~ttn~~~~~Ld~ 816 (976)
.+....| ..+|+. +.. ..-+|.|||.+++.|..
T Consensus 233 ~~~~~~ll~~Il~~R~~~--~~~ti~TSNl~~~el~~ 267 (306)
T PRK08939 233 SWVRDEVLGVILQYRMQE--ELPTFFTSNFDFDELEH 267 (306)
T ss_pred HHHHHHHHHHHHHHHHHC--CCeEEEECCCCHHHHHH
Confidence 2222222 223321 222 22355699988666654
No 463
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=1.7e-05 Score=90.24 Aligned_cols=133 Identities=19% Similarity=0.130 Sum_probs=78.3
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCee----------ec---------------CCcccc--cC-C-CCCC------
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVH----------SL---------------GLPALL--SD-P-SAKT------ 748 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~----------~~---------------~~~~l~--~~-~-~~g~------ 748 (976)
..+||+||+|+||+++|.++|+.+-.-+-- .+ +-++++ .. + -.|.
T Consensus 42 HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I 121 (365)
T PRK07471 42 HAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVI 121 (365)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCeEEEecccccccccccccc
Confidence 359999999999999999999986321100 00 001111 00 0 0010
Q ss_pred hHHHHHHHHHHHH----hcCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCC
Q 002045 749 PEEALVHIFGEAR----RTTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPL 824 (976)
Q Consensus 749 ~e~~~~~~f~~a~----~~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~ 824 (976)
.-..++.+...+. ...|-||+|||+|.+-. ...+.|+..|...+. .+++|.+|+.+ +.+.+ . +++.
T Consensus 122 ~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~----~aanaLLK~LEepp~--~~~~IL~t~~~-~~llp--t-i~SR 191 (365)
T PRK07471 122 TVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA----NAANALLKVLEEPPA--RSLFLLVSHAP-ARLLP--T-IRSR 191 (365)
T ss_pred cHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH----HHHHHHHHHHhcCCC--CeEEEEEECCc-hhchH--H-hhcc
Confidence 1133555544432 35578999999998754 344456677765432 34444566666 44544 2 2331
Q ss_pred ccEEEecCCCHHHHHHHHHHHH
Q 002045 825 RSVYQVEKPSTEDRSLFLGRLI 846 (976)
Q Consensus 825 r~~i~v~~P~~~er~~i~~~~l 846 (976)
-.++.|.+|+.++..+++....
T Consensus 192 c~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 192 CRKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred ceEEECCCCCHHHHHHHHHHhc
Confidence 2678899999999988887643
No 464
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.11 E-value=4.2e-06 Score=79.14 Aligned_cols=94 Identities=22% Similarity=0.267 Sum_probs=49.9
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCc-cccc----CCCC-----CChHHHHHHHHHHHHhcCCceEeccccc
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLP-ALLS----DPSA-----KTPEEALVHIFGEARRTTPSILYIPQFN 774 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~-~l~~----~~~~-----g~~e~~~~~~f~~a~~~~p~ilfiDEid 774 (976)
|+||.|+||+|||++|+++|+.+ +..|.+|.+. +++- +..+ ++.+-.-.-+| -.|||+|||.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~-~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiN 72 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL-GLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEIN 72 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT-T--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGG
T ss_pred CEeeECCCccHHHHHHHHHHHHc-CCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeecccc
Confidence 58999999999999999999998 7788877652 2211 0000 00000000011 2599999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhC----CC-----CCCEEEEEecCCC
Q 002045 775 LWWENAHEQLRAVLLTLLEEL----PS-----HLPILLLGSSSVP 810 (976)
Q Consensus 775 ~l~~~~~~~~~~~l~~ll~~~----~~-----~~~v~vi~ttn~~ 810 (976)
...+..+. +|+..|.+- .+ -.+.+||||-|..
T Consensus 73 rappktQs----AlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~ 113 (131)
T PF07726_consen 73 RAPPKTQS----ALLEAMEERQVTIDGQTYPLPDPFFVIATQNPV 113 (131)
T ss_dssp GS-HHHHH----HHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT
T ss_pred cCCHHHHH----HHHHHHHcCeEEeCCEEEECCCcEEEEEecCcc
Confidence 97665544 455666532 11 3478899998854
No 465
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.10 E-value=6.3e-06 Score=100.76 Aligned_cols=136 Identities=21% Similarity=0.228 Sum_probs=77.2
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc----------------------------------CCCeeecCCcccccCCCCCCh
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE----------------------------------KFPVHSLGLPALLSDPSAKTP 749 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~----------------------------------~~~~~~~~~~~l~~~~~~g~~ 749 (976)
.++||.|++|||||++|++|+..+. ..+|+.+.+....... .|.-
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l-~G~~ 104 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRV-VGSL 104 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHc-CCcc
Confidence 3699999999999999999999873 2345554432211111 1210
Q ss_pred --HHHHHH---HHH--HHHhcCCceEeccccchhHHHHHHHHHHHHHHHHhhC----C-------CCCCEEEEEecCCCc
Q 002045 750 --EEALVH---IFG--EARRTTPSILYIPQFNLWWENAHEQLRAVLLTLLEEL----P-------SHLPILLLGSSSVPL 811 (976)
Q Consensus 750 --e~~~~~---~f~--~a~~~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~----~-------~~~~v~vi~ttn~~~ 811 (976)
+..+.. .+. .......+|||||||+.+....+.. |+..|+.- . ....++||+|+|...
T Consensus 105 d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~----Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~e 180 (633)
T TIGR02442 105 DIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDV----LLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEE 180 (633)
T ss_pred cHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHH----HHHHHhcCCEEEEECCceeeecCCeEEEEecCCCC
Confidence 111100 000 0001234699999999988766555 44455421 1 124688999988432
Q ss_pred ccCcCCCCCCcCCccEEEecCC-CHHHHHHHHHHHH
Q 002045 812 AEVEGDPSTVFPLRSVYQVEKP-STEDRSLFLGRLI 846 (976)
Q Consensus 812 ~~Ld~~~~~~~~~r~~i~v~~P-~~~er~~i~~~~l 846 (976)
..|.+ +.+.++..++.+..| +.+++.+|++..+
T Consensus 181 g~l~~--~L~dR~~l~i~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 181 GDLRP--QLLDRFGLCVDVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred CCCCH--HHHhhcceEEEccCCCchHHHHHHHHHHH
Confidence 33544 333333356666655 4577888887644
No 466
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.09 E-value=4.8e-07 Score=92.48 Aligned_cols=107 Identities=20% Similarity=0.268 Sum_probs=59.6
Q ss_pred CceeeccCCCCcHhhHHHHHHHhh--cCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHEL--EKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAH 781 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l--~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~~ 781 (976)
.+++|+|+||||||+||.+|++++ .+.+++.++.++|+..............++.... ...+|+|||+..... .
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~~~--~ 123 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYEPL--S 123 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS-----
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccceeee--c
Confidence 579999999999999999999863 3566777777766542111000111223333333 347999999976532 2
Q ss_pred HHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcC
Q 002045 782 EQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEG 816 (976)
Q Consensus 782 ~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~ 816 (976)
+.....|..+|+.--... - +|.|||..+..|..
T Consensus 124 ~~~~~~l~~ii~~R~~~~-~-tIiTSN~~~~~l~~ 156 (178)
T PF01695_consen 124 EWEAELLFEIIDERYERK-P-TIITSNLSPSELEE 156 (178)
T ss_dssp HHHHHCTHHHHHHHHHT--E-EEEEESS-HHHHHT
T ss_pred ccccccchhhhhHhhccc-C-eEeeCCCchhhHhh
Confidence 223334444444322222 2 34489988666655
No 467
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.09 E-value=4.2e-05 Score=82.19 Aligned_cols=130 Identities=15% Similarity=0.199 Sum_probs=83.4
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcC---CC--eeecCCcccccCCCCCChHHHHHHHHHHHHh-------cCCceEecc
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEK---FP--VHSLGLPALLSDPSAKTPEEALVHIFGEARR-------TTPSILYIP 771 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~---~~--~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~-------~~p~ilfiD 771 (976)
|++|||||||||||...-+.|..+.+ .. +..++.++-.+ -..-..-.++|..++. .++-.+++|
T Consensus 63 Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rg----id~vr~qi~~fast~~~~~fst~~~fKlvILD 138 (360)
T KOG0990|consen 63 PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRG----IDPVRQQIHLFASTQQPTTYSTHAAFKLVILD 138 (360)
T ss_pred CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccC----CcchHHHHHHHHhhccceeccccCceeEEEec
Confidence 48999999999999999999998755 11 22233332221 1222334456666663 377899999
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 772 QFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 772 Eid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
|+|++...++..+.+++.++ .. ++-|+.-+|.+ ..+.+ +.+++. ..+.|.+-+...-...+.+++.
T Consensus 139 EADaMT~~AQnALRRviek~----t~--n~rF~ii~n~~-~ki~p--a~qsRc-trfrf~pl~~~~~~~r~shi~e 204 (360)
T KOG0990|consen 139 EADAMTRDAQNALRRVIEKY----TA--NTRFATISNPP-QKIHP--AQQSRC-TRFRFAPLTMAQQTERQSHIRE 204 (360)
T ss_pred chhHhhHHHHHHHHHHHHHh----cc--ceEEEEeccCh-hhcCc--hhhccc-ccCCCCCCChhhhhhHHHHHHh
Confidence 99999988887776633322 22 33333445666 56666 444332 2344777788888888888887
No 468
>PRK04132 replication factor C small subunit; Provisional
Probab=98.09 E-value=5.7e-06 Score=102.02 Aligned_cols=126 Identities=13% Similarity=0.120 Sum_probs=87.3
Q ss_pred ceeecc--CCCCcHhhHHHHHHHhhc----CCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcC------CceEeccc
Q 002045 705 RLLLCG--SEGTGVDHLGPAILHELE----KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTT------PSILYIPQ 772 (976)
Q Consensus 705 ~~Ll~G--~pGtGKT~lA~aia~~l~----~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~------p~ilfiDE 772 (976)
+-++.| |++.|||++|+|||+++. +.+++.+++++..+ -..++.+...+.... ..|+||||
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg-------id~IR~iIk~~a~~~~~~~~~~KVvIIDE 638 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG-------INVIREKVKEFARTKPIGGASFKIIFLDE 638 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc-------HHHHHHHHHHHHhcCCcCCCCCEEEEEEC
Confidence 567779 999999999999999862 35789999776432 235666665544322 25999999
Q ss_pred cchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 773 FNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 773 id~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
+|.+....+ +.|+..|+..+ ..+.+|++||.+ ..+.+ + +++.-.++.|.+|+.++...+++.++.
T Consensus 639 aD~Lt~~AQ----nALLk~lEep~--~~~~FILi~N~~-~kIi~--t-IrSRC~~i~F~~ls~~~i~~~L~~I~~ 703 (846)
T PRK04132 639 ADALTQDAQ----QALRRTMEMFS--SNVRFILSCNYS-SKIIE--P-IQSRCAIFRFRPLRDEDIAKRLRYIAE 703 (846)
T ss_pred cccCCHHHH----HHHHHHhhCCC--CCeEEEEEeCCh-hhCch--H-HhhhceEEeCCCCCHHHHHHHHHHHHH
Confidence 999976443 34555555433 355666677777 44443 2 333136888999999999998888877
No 469
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.09 E-value=6.4e-06 Score=99.58 Aligned_cols=137 Identities=19% Similarity=0.143 Sum_probs=81.0
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcC-CCeeecCCcccccCCCCCCh--HHHHHH---HHH--HHHhcCCceEeccccch
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEK-FPVHSLGLPALLSDPSAKTP--EEALVH---IFG--EARRTTPSILYIPQFNL 775 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~-~~~~~~~~~~l~~~~~~g~~--e~~~~~---~f~--~a~~~~p~ilfiDEid~ 775 (976)
.+|||.|+||||||++|++|+..+.. .+|+.+.....- ....|.. +..+.. .|. ..-....+|||||||+.
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~-d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTE-DRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccch-hhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 37999999999999999999998743 368877742111 1112221 001100 000 00012346999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhC----C-------CCCCEEEEEecCCCc--ccCcCCCCCCcCCccEEE-ecCCCHHHHHHH
Q 002045 776 WWENAHEQLRAVLLTLLEEL----P-------SHLPILLLGSSSVPL--AEVEGDPSTVFPLRSVYQ-VEKPSTEDRSLF 841 (976)
Q Consensus 776 l~~~~~~~~~~~l~~ll~~~----~-------~~~~v~vi~ttn~~~--~~Ld~~~~~~~~~r~~i~-v~~P~~~er~~i 841 (976)
+.+..+..+ +..|+.- . .-..+.||||+|... ..|.+ +.+.++..++. ..+|+.++|.+|
T Consensus 96 l~~~~q~~L----l~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~--~LldRf~l~v~~~~~~~~~er~ei 169 (589)
T TIGR02031 96 LDDGLSNRL----LQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPD--HLLDRLALHVSLEDVASQDLRVEI 169 (589)
T ss_pred CCHHHHHHH----HHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCH--HHHHhccCeeecCCCCCHHHHHHH
Confidence 887666654 4445421 1 124678888888652 13444 33333323333 456788999999
Q ss_pred HHHHHH
Q 002045 842 LGRLIE 847 (976)
Q Consensus 842 ~~~~l~ 847 (976)
++..+.
T Consensus 170 l~~~~~ 175 (589)
T TIGR02031 170 VRRERC 175 (589)
T ss_pred HHHHHH
Confidence 988764
No 470
>PRK15115 response regulator GlrR; Provisional
Probab=98.08 E-value=5.1e-06 Score=98.04 Aligned_cols=134 Identities=19% Similarity=0.246 Sum_probs=84.8
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcccccCCCCCChHHHHH-HHHHH---------------HHhcCCc
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPSAKTPEEALV-HIFGE---------------ARRTTPS 766 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~~~~~g~~e~~~~-~~f~~---------------a~~~~p~ 766 (976)
.++|+|++|||||++|+++.+... +.+|+.+++..+-.. .+. .+|.. ......+
T Consensus 159 ~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~--------~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 230 (444)
T PRK15115 159 SVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQ--------LLESELFGHARGAFTGAVSNREGLFQAAEGG 230 (444)
T ss_pred eEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHH--------HHHHHhcCCCcCCCCCCccCCCCcEEECCCC
Confidence 599999999999999999998742 368999998754211 111 12211 1123457
Q ss_pred eEeccccchhHHHHHHHHHHHHHHHH-hhCCC----CCCEEEEEecCCCcccCcCCCCCCcCCc-----cEEEecCCCHH
Q 002045 767 ILYIPQFNLWWENAHEQLRAVLLTLL-EELPS----HLPILLLGSSSVPLAEVEGDPSTVFPLR-----SVYQVEKPSTE 836 (976)
Q Consensus 767 ilfiDEid~l~~~~~~~~~~~l~~ll-~~~~~----~~~v~vi~ttn~~~~~Ld~~~~~~~~~r-----~~i~v~~P~~~ 836 (976)
+||||||+.|....+..++..|.+-- ..+.. ..++.||+||+.....+-. ...|+.. ..+.|..|...
T Consensus 231 tl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~--~~~f~~~l~~~l~~~~i~lPpLr 308 (444)
T PRK15115 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMA--RGEFREDLYYRLNVVSLKIPALA 308 (444)
T ss_pred EEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHH--cCCccHHHHHhhceeeecCCChH
Confidence 99999999999887777655442211 11111 2367888998876332222 3444322 56778999999
Q ss_pred HHHHHHHHHHHH
Q 002045 837 DRSLFLGRLIEA 848 (976)
Q Consensus 837 er~~i~~~~l~~ 848 (976)
+|.+-+..++..
T Consensus 309 ~R~eDi~~l~~~ 320 (444)
T PRK15115 309 ERTEDIPLLANH 320 (444)
T ss_pred hccccHHHHHHH
Confidence 997644444443
No 471
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.07 E-value=3.5e-05 Score=85.23 Aligned_cols=165 Identities=18% Similarity=0.244 Sum_probs=87.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHH--hhcCCcEEEEEecch----hHHhhh---HhH---------HHHHHHHHHHH
Q 002045 411 TPPRGVLLCGPPGTGKTLIARALACAA--SKAGQKVSFYMRKGA----DVLSKW---VGE---------AERQLKLLFEE 472 (976)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l--~~~~~~~~~~~~~~~----~l~~~~---~g~---------~~~~l~~~f~~ 472 (976)
....-|.|+|++|+|||+||..+++.. ......+-++.+... .+.... ++. ....+...+..
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 96 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE 96 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 456789999999999999999999883 333323344443332 111111 111 11223333344
Q ss_pred HHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCC
Q 002045 473 AQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLP 552 (976)
Q Consensus 473 a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P 552 (976)
.....+++|+||+++... .+..+...+.... .+..||.||.... +-..+.. ....+.++..
T Consensus 97 ~L~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~~--~~~kilvTTR~~~-v~~~~~~---~~~~~~l~~L 157 (287)
T PF00931_consen 97 LLKDKRCLLVLDDVWDEE-------------DLEELREPLPSFS--SGSKILVTTRDRS-VAGSLGG---TDKVIELEPL 157 (287)
T ss_dssp HHCCTSEEEEEEEE-SHH-------------HH-------HCHH--SS-EEEEEESCGG-GGTTHHS---CEEEEECSS-
T ss_pred hhccccceeeeeeecccc-------------ccccccccccccc--ccccccccccccc-ccccccc---cccccccccc
Confidence 444558999999997441 2223333322111 2334555665432 2222221 1467889999
Q ss_pred CHHHHHHHHHHHHhcCC---CCCCHHHHHHHHHHccCCCHHHHHHH
Q 002045 553 GCEARAEILDIHTRKWK---QPPSRELKSELAASCVGYCGADLKAL 595 (976)
Q Consensus 553 ~~~er~~Il~~~l~~~~---~~~~~~~l~~lA~~t~G~s~~dI~~l 595 (976)
+.++-.++|........ ..........|+..+.|+ +-.|..+
T Consensus 158 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 202 (287)
T PF00931_consen 158 SEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKLI 202 (287)
T ss_dssp -HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 99999999998876543 122234557899998875 3434333
No 472
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=0.00011 Score=80.61 Aligned_cols=143 Identities=12% Similarity=0.166 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC-------------------cE
Q 002045 384 LSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ-------------------KV 444 (976)
Q Consensus 384 ~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~-------------------~~ 444 (976)
+..+++.++.++.. -+.+..+||+|| +||+++|+++|..+..... ..
T Consensus 7 q~~~~~~L~~~~~~------------~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HP 72 (290)
T PRK07276 7 QPKVFQRFQTILEQ------------DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFS 72 (290)
T ss_pred HHHHHHHHHHHHHc------------CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 44556666665543 145678999996 6899999999998854321 11
Q ss_pred EEEEecchhHHhhhHhHHHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCc
Q 002045 445 SFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQ 520 (976)
Q Consensus 445 ~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~----~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~ 520 (976)
.++.+.... .. -.-..++.+...+. .+...|++||++|.| .....+.||..++. ...+
T Consensus 73 D~~~i~p~~---~~--I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m-----------~~~AaNaLLKtLEE--Pp~~ 134 (290)
T PRK07276 73 DVTVIEPQG---QV--IKTDTIRELVKNFSQSGYEGKQQVFIIKDADKM-----------HVNAANSLLKVIEE--PQSE 134 (290)
T ss_pred CeeeecCCC---Cc--CCHHHHHHHHHHHhhCcccCCcEEEEeehhhhc-----------CHHHHHHHHHHhcC--CCCC
Confidence 111111110 00 01234444444433 233469999999998 35567789999994 4556
Q ss_pred EEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHH
Q 002045 521 VVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILD 562 (976)
Q Consensus 521 vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~ 562 (976)
+++|.+|+.++.|-|.+++ |+ ..|.|+. +.++..+++.
T Consensus 135 t~~iL~t~~~~~lLpTI~S--Rc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 135 IYIFLLTNDENKVLPTIKS--RT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred eEEEEEECChhhCchHHHH--cc-eeeeCCC-cHHHHHHHHH
Confidence 7888888889999999999 77 6778866 5566555554
No 473
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.04 E-value=2e-05 Score=83.04 Aligned_cols=83 Identities=24% Similarity=0.375 Sum_probs=55.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecc--hhHHhhhH-------------------hHHHHHHH
Q 002045 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG--ADVLSKWV-------------------GEAERQLK 467 (976)
Q Consensus 409 ~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~--~~l~~~~~-------------------g~~~~~l~ 467 (976)
|++...-++|+||||||||+++..++......+..+-|+.... ...+.... .+....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 6788889999999999999999999988766666666665542 11111100 11112244
Q ss_pred HHHHHHHhcCCcEEEEccccccCC
Q 002045 468 LLFEEAQRNQPSIIFFDEIDGLAP 491 (976)
Q Consensus 468 ~~f~~a~~~~p~VL~iDEid~L~~ 491 (976)
.+...+....+.+|+||-+..+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhH
Confidence 444445555788999999998863
No 474
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=2e-05 Score=89.19 Aligned_cols=131 Identities=19% Similarity=0.190 Sum_probs=76.7
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCC-----eeecC-----C-----------cccc--c-C--CCCC-----ChHHHH
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFP-----VHSLG-----L-----------PALL--S-D--PSAK-----TPEEAL 753 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~-----~~~~~-----~-----------~~l~--~-~--~~~g-----~~e~~~ 753 (976)
.+||+||+|+|||++|..+|+.+...+ -..+. + ++++ . . ...| -+-..+
T Consensus 47 a~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~i 126 (351)
T PRK09112 47 ALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEI 126 (351)
T ss_pred eEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHH
Confidence 599999999999999999999874411 00100 0 1111 0 0 0000 011334
Q ss_pred HHHHHHHH----hcCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEE
Q 002045 754 VHIFGEAR----RTTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQ 829 (976)
Q Consensus 754 ~~~f~~a~----~~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~ 829 (976)
+.+..... ....-|++|||+|.+-.... +.|+..|+..+ ...++|+.| +.+ ..|.+ .. ++.-.++.
T Consensus 127 R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aa----naLLk~LEEpp-~~~~fiLit-~~~-~~llp--tI-rSRc~~i~ 196 (351)
T PRK09112 127 RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAA----NAILKTLEEPP-ARALFILIS-HSS-GRLLP--TI-RSRCQPIS 196 (351)
T ss_pred HHHHHHhhhccccCCceEEEEEchhhcCHHHH----HHHHHHHhcCC-CCceEEEEE-CCh-hhccH--HH-HhhccEEE
Confidence 44433322 23456999999999865443 44677776633 344444444 556 44444 22 22125888
Q ss_pred ecCCCHHHHHHHHHHH
Q 002045 830 VEKPSTEDRSLFLGRL 845 (976)
Q Consensus 830 v~~P~~~er~~i~~~~ 845 (976)
|++|+.++...+++..
T Consensus 197 l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 197 LKPLDDDELKKALSHL 212 (351)
T ss_pred ecCCCHHHHHHHHHHh
Confidence 9999999999998863
No 475
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=1.6e-05 Score=89.10 Aligned_cols=132 Identities=15% Similarity=0.111 Sum_probs=78.9
Q ss_pred CCceeeccCCCCcHhhHHHHHHHhhcCCCeee----------------cCCccc--ccCCC-------------------
Q 002045 703 RPRLLLCGSEGTGVDHLGPAILHELEKFPVHS----------------LGLPAL--LSDPS------------------- 745 (976)
Q Consensus 703 ~~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~----------------~~~~~l--~~~~~------------------- 745 (976)
+..+||+||+|+||+++|.++|+.+....-.. -+-+++ +....
T Consensus 21 ~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~~ 100 (342)
T PRK06964 21 PHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADADE 100 (342)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhhc
Confidence 45799999999999999999999863311000 000111 00000
Q ss_pred CC---------ChHHHHHHHHHHHHh----cCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcc
Q 002045 746 AK---------TPEEALVHIFGEARR----TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLA 812 (976)
Q Consensus 746 ~g---------~~e~~~~~~f~~a~~----~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~ 812 (976)
.| =.-..++.+...+.. ..--|++||++|.+.... .+.|++.|++ +-..+++|.+|+++ +
T Consensus 101 ~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~A----aNaLLKtLEE--Pp~~t~fiL~t~~~-~ 173 (342)
T PRK06964 101 GGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAA----ANALLKTLEE--PPPGTVFLLVSARI-D 173 (342)
T ss_pred ccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHH----HHHHHHHhcC--CCcCcEEEEEECCh-h
Confidence 00 012345555554332 233599999999976544 3456666764 33456666666777 5
Q ss_pred cCcCCCCCCcCCccEEEecCCCHHHHHHHHHH
Q 002045 813 EVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGR 844 (976)
Q Consensus 813 ~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~ 844 (976)
.|.+ ..+.| -..+.|++|+.++..+.|..
T Consensus 174 ~LLp--TI~SR-cq~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 174 RLLP--TILSR-CRQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred hCcH--HHHhc-CEEEEecCCCHHHHHHHHHH
Confidence 5655 32222 25777999999998888864
No 476
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.04 E-value=0.00022 Score=74.86 Aligned_cols=177 Identities=22% Similarity=0.236 Sum_probs=108.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecc-----hhHHhhhHhHH------------HHHHHHHHHHHHh-c
Q 002045 415 GVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG-----ADVLSKWVGEA------------ERQLKLLFEEAQR-N 476 (976)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~-----~~l~~~~~g~~------------~~~l~~~f~~a~~-~ 476 (976)
-+.++|+-|+|||+++|++...+... .+..+++.. +.+...++.+. +..-+.+...... .
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d--~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~ 130 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNED--QVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGK 130 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCC--ceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCC
Confidence 57899999999999999777666532 233344443 23333332221 1222333333333 4
Q ss_pred CCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC-CCC--cEEEEecCCCccccchhhcCC------CCCcccc
Q 002045 477 QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-SRG--QVVLIGATNRVDAIDGALRRP------GRFDREF 547 (976)
Q Consensus 477 ~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~-~~~--~vivI~atn~~~~ld~aL~r~------gRf~~~i 547 (976)
.|.++++||+|.|.. ..+..|.-+++... ..+ .++.|+-. .|.+.++.+ -|++..|
T Consensus 131 r~v~l~vdEah~L~~-----------~~le~Lrll~nl~~~~~~~l~ivL~Gqp----~L~~~lr~~~l~e~~~R~~ir~ 195 (269)
T COG3267 131 RPVVLMVDEAHDLND-----------SALEALRLLTNLEEDSSKLLSIVLIGQP----KLRPRLRLPVLRELEQRIDIRI 195 (269)
T ss_pred CCeEEeehhHhhhCh-----------hHHHHHHHHHhhcccccCceeeeecCCc----ccchhhchHHHHhhhheEEEEE
Confidence 468999999998852 23333333332211 122 24444432 233322211 1676668
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCC
Q 002045 548 NFPLPGCEARAEILDIHTRKWKQ---PPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (976)
Q Consensus 548 ~~~~P~~~er~~Il~~~l~~~~~---~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~ 609 (976)
++++.+.++...+++.+++.-+. -++++.+..++..+.| .+..|.++|..|...+.....+
T Consensus 196 ~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~ 259 (269)
T COG3267 196 ELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGED 259 (269)
T ss_pred ecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999998887543 2467777889999998 6788999999988888776543
No 477
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.04 E-value=8.2e-06 Score=92.41 Aligned_cols=115 Identities=15% Similarity=0.162 Sum_probs=64.6
Q ss_pred CcccCCceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCccccc-------CCCCCChHHHHHHHHHHHHhcCCceEecc
Q 002045 699 PLVYRPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLS-------DPSAKTPEEALVHIFGEARRTTPSILYIP 771 (976)
Q Consensus 699 p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~-------~~~~g~~e~~~~~~f~~a~~~~p~ilfiD 771 (976)
+...++|+.|+|++|+|||+|.-++...+..-.-.++....++. .+ .|.. .-+..+-.... ..-.||+||
T Consensus 58 ~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~-~~~~-~~l~~va~~l~-~~~~lLcfD 134 (362)
T PF03969_consen 58 PPPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQL-RGQD-DPLPQVADELA-KESRLLCFD 134 (362)
T ss_pred cCCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHH-hCCC-ccHHHHHHHHH-hcCCEEEEe
Confidence 33457899999999999999999998876331111122112211 11 0111 11222222211 223599999
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcC
Q 002045 772 QFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFP 823 (976)
Q Consensus 772 Eid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~ 823 (976)
|++.---...--+.+.|..++ ..+|+||+|+|++|++|=+ .++.+
T Consensus 135 EF~V~DiaDAmil~rLf~~l~-----~~gvvlVaTSN~~P~~Ly~--~gl~r 179 (362)
T PF03969_consen 135 EFQVTDIADAMILKRLFEALF-----KRGVVLVATSNRPPEDLYK--NGLQR 179 (362)
T ss_pred eeeccchhHHHHHHHHHHHHH-----HCCCEEEecCCCChHHHcC--CcccH
Confidence 999643222222223333333 4688999999999988866 44444
No 478
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.03 E-value=6.9e-06 Score=97.30 Aligned_cols=139 Identities=18% Similarity=0.195 Sum_probs=83.6
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcccccCC----CCC--------ChHHHHHHHHHHHHhcCCceEec
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDP----SAK--------TPEEALVHIFGEARRTTPSILYI 770 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~~~----~~g--------~~e~~~~~~f~~a~~~~p~ilfi 770 (976)
.+|+.|++||||+++|+++..... +.+|+.+++..+-... ..| ... .....|. ....++|||
T Consensus 168 ~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~-~~~g~~~---~a~~gtl~l 243 (457)
T PRK11361 168 SVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQT-LRQGLFE---RANEGTLLL 243 (457)
T ss_pred EEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCC-CCCCceE---ECCCCEEEE
Confidence 599999999999999999988642 3589999987552110 000 000 0001222 234579999
Q ss_pred cccchhHHHHHHHHHHHHHHH-HhhCCC----CCCEEEEEecCCCcccCcCCCCCCcCCc-----cEEEecCCCHHHHHH
Q 002045 771 PQFNLWWENAHEQLRAVLLTL-LEELPS----HLPILLLGSSSVPLAEVEGDPSTVFPLR-----SVYQVEKPSTEDRSL 840 (976)
Q Consensus 771 DEid~l~~~~~~~~~~~l~~l-l~~~~~----~~~v~vi~ttn~~~~~Ld~~~~~~~~~r-----~~i~v~~P~~~er~~ 840 (976)
|||+.|....+..++..|..- +..+.. ..++.||+||+.....+-. ...|+.. ..+.+..|...+|..
T Consensus 244 d~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~--~g~~~~~l~~~l~~~~i~~ppLreR~~ 321 (457)
T PRK11361 244 DEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVK--EGTFREDLFYRLNVIHLILPPLRDRRE 321 (457)
T ss_pred echhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHH--cCCchHHHHHHhccceecCCChhhchh
Confidence 999999887776654444221 011111 2357899999877433322 3333321 467788999999876
Q ss_pred HHHHHHHHH
Q 002045 841 FLGRLIEAA 849 (976)
Q Consensus 841 i~~~~l~~~ 849 (976)
-+..++..+
T Consensus 322 di~~l~~~~ 330 (457)
T PRK11361 322 DISLLANHF 330 (457)
T ss_pred hHHHHHHHH
Confidence 555444433
No 479
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.02 E-value=4.1e-06 Score=99.91 Aligned_cols=133 Identities=11% Similarity=0.148 Sum_probs=80.4
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeec---CCccccc----CCCCCChHHHHH-HHHHHHHhcCCceEeccccch
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSL---GLPALLS----DPSAKTPEEALV-HIFGEARRTTPSILYIPQFNL 775 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~---~~~~l~~----~~~~g~~e~~~~-~~f~~a~~~~p~ilfiDEid~ 775 (976)
.++||+|+||||||++|+++++.+....++.. +...+.. +...|+. .++ ..+. ....++|||||++.
T Consensus 237 ~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~--~~~~G~l~---~A~~Gil~iDEi~~ 311 (509)
T smart00350 237 INILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREF--TLEGGALV---LADNGVCCIDEFDK 311 (509)
T ss_pred ceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceE--EecCccEE---ecCCCEEEEechhh
Confidence 36999999999999999999998654433331 1111211 0001110 000 0111 12357999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhC----C-------CCCCEEEEEecCCCcc------------cCcCCCCCCcCCccEE-Eec
Q 002045 776 WWENAHEQLRAVLLTLLEEL----P-------SHLPILLLGSSSVPLA------------EVEGDPSTVFPLRSVY-QVE 831 (976)
Q Consensus 776 l~~~~~~~~~~~l~~ll~~~----~-------~~~~v~vi~ttn~~~~------------~Ld~~~~~~~~~r~~i-~v~ 831 (976)
+....+..+. ..|++- . -..+..||||+|-... .|++ +.+-++..++ ...
T Consensus 312 l~~~~q~~L~----e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~--~lLsRFdLi~~~~d 385 (509)
T smart00350 312 MDDSDRTAIH----EAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPA--PILSRFDLLFVVLD 385 (509)
T ss_pred CCHHHHHHHH----HHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCCh--HHhCceeeEEEecC
Confidence 8776555543 444321 1 1257789999995422 4666 4444443433 357
Q ss_pred CCCHHHHHHHHHHHHH
Q 002045 832 KPSTEDRSLFLGRLIE 847 (976)
Q Consensus 832 ~P~~~er~~i~~~~l~ 847 (976)
.|+.+...+|.++++.
T Consensus 386 ~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 386 EVDEERDRELAKHVVD 401 (509)
T ss_pred CCChHHHHHHHHHHHH
Confidence 8999999999998886
No 480
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.01 E-value=8e-06 Score=80.03 Aligned_cols=89 Identities=25% Similarity=0.324 Sum_probs=58.7
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcC--CCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHHHHH
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEK--FPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHE 782 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~--~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~~~ 782 (976)
.|||+|++||||+++|++|++.... .+|+.+++..+- .++++.+ .++.|||++||.|....+.
T Consensus 23 pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~------------~~~l~~a---~~gtL~l~~i~~L~~~~Q~ 87 (138)
T PF14532_consen 23 PVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP------------AELLEQA---KGGTLYLKNIDRLSPEAQR 87 (138)
T ss_dssp -EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC------------HHHHHHC---TTSEEEEECGCCS-HHHHH
T ss_pred cEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc------------HHHHHHc---CCCEEEECChHHCCHHHHH
Confidence 4999999999999999999997532 345555543211 3455554 5679999999999887777
Q ss_pred HHHHHHHHHHhhCCCCCCEEEEEecCCCccc
Q 002045 783 QLRAVLLTLLEELPSHLPILLLGSSSVPLAE 813 (976)
Q Consensus 783 ~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~ 813 (976)
.+. .+|...+ ..++-||+++..+...
T Consensus 88 ~L~----~~l~~~~-~~~~RlI~ss~~~l~~ 113 (138)
T PF14532_consen 88 RLL----DLLKRQE-RSNVRLIASSSQDLEE 113 (138)
T ss_dssp HHH----HHHHHCT-TTTSEEEEEECC-CCC
T ss_pred HHH----HHHHhcC-CCCeEEEEEeCCCHHH
Confidence 654 4444444 4456677777766333
No 481
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=0.0001 Score=81.41 Aligned_cols=128 Identities=13% Similarity=0.120 Sum_probs=86.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhc-------C-CcEEEEEec--chhHHhhhHhHHHHHHHHHHHHHH-----hcC
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAASKA-------G-QKVSFYMRK--GADVLSKWVGEAERQLKLLFEEAQ-----RNQ 477 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~-------~-~~~~~~~~~--~~~l~~~~~g~~~~~l~~~f~~a~-----~~~ 477 (976)
+...||+|+.|+||+.+|+++++.+.+. + ....+..++ +..+. + ..++.+.+.+. .+.
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~---v----d~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLS---K----SEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCC---H----HHHHHHHHHhccCCcccCC
Confidence 4567799999999999999999998331 1 111233333 22111 1 23333433332 134
Q ss_pred CcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHH
Q 002045 478 PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEAR 557 (976)
Q Consensus 478 p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er 557 (976)
.-|++||+++.+ .....+.||..|+. ....+++|.+|+.+..|-+.+++ |+ .++.|.+++.++.
T Consensus 91 ~KvvII~~~e~m-----------~~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~~~l 154 (299)
T PRK07132 91 KKILIIKNIEKT-----------SNSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQQKI 154 (299)
T ss_pred ceEEEEeccccc-----------CHHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCHHHH
Confidence 569999999887 34566789999995 44566666667677888889888 55 6799999999888
Q ss_pred HHHHHH
Q 002045 558 AEILDI 563 (976)
Q Consensus 558 ~~Il~~ 563 (976)
.+.|..
T Consensus 155 ~~~l~~ 160 (299)
T PRK07132 155 LAKLLS 160 (299)
T ss_pred HHHHHH
Confidence 877654
No 482
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.00 E-value=1.9e-05 Score=89.12 Aligned_cols=130 Identities=14% Similarity=0.094 Sum_probs=75.2
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeee---------------cCCcccccCCCCCC--hHHHHHHHHHHHHh----
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHS---------------LGLPALLSDPSAKT--PEEALVHIFGEARR---- 762 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~---------------~~~~~l~~~~~~g~--~e~~~~~~f~~a~~---- 762 (976)
..+||+||+|+||+++|+++|+.+....-.. -+-+++.--...|. .-..++.+...+..
T Consensus 29 ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~ 108 (329)
T PRK08058 29 HAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVE 108 (329)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcc
Confidence 3579999999999999999999863321000 00011110000111 12355555544432
Q ss_pred cCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHH
Q 002045 763 TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFL 842 (976)
Q Consensus 763 ~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~ 842 (976)
...-|++||++|.+-.. ..+.|+..|+..+ ...++|+ +|+.+ ..|.+ . +++.-.+++|.+|+.++...+|
T Consensus 109 ~~~kvviI~~a~~~~~~----a~NaLLK~LEEPp-~~~~~Il-~t~~~-~~ll~--T-IrSRc~~i~~~~~~~~~~~~~L 178 (329)
T PRK08058 109 SNKKVYIIEHADKMTAS----AANSLLKFLEEPS-GGTTAIL-LTENK-HQILP--T-ILSRCQVVEFRPLPPESLIQRL 178 (329)
T ss_pred cCceEEEeehHhhhCHH----HHHHHHHHhcCCC-CCceEEE-EeCCh-HhCcH--H-HHhhceeeeCCCCCHHHHHHHH
Confidence 23459999999987543 3445667776644 3344444 55555 34444 2 3332368889999999887776
Q ss_pred H
Q 002045 843 G 843 (976)
Q Consensus 843 ~ 843 (976)
+
T Consensus 179 ~ 179 (329)
T PRK08058 179 Q 179 (329)
T ss_pred H
Confidence 5
No 483
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.99 E-value=9.1e-06 Score=89.03 Aligned_cols=176 Identities=11% Similarity=0.070 Sum_probs=87.4
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeeecC---C----cc----cccCC---CCCCh-HHHHHHHH----HHHHhcCC
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLG---L----PA----LLSDP---SAKTP-EEALVHIF----GEARRTTP 765 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~---~----~~----l~~~~---~~g~~-e~~~~~~f----~~a~~~~p 765 (976)
-++|+||+|+|||++++.++..+....++... . .+ +...+ ..+.. ...+..+. .......+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 37899999999999999999987422222211 0 01 11111 01111 11122222 22334567
Q ss_pred ceEeccccchhHHHHHHHHHHHHHHHHhhCC-CCCCEEEEEecCCC--cccCcC-CCCCCcC-CccEEEecCCCHHHHHH
Q 002045 766 SILYIPQFNLWWENAHEQLRAVLLTLLEELP-SHLPILLLGSSSVP--LAEVEG-DPSTVFP-LRSVYQVEKPSTEDRSL 840 (976)
Q Consensus 766 ~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~-~~~~v~vi~ttn~~--~~~Ld~-~~~~~~~-~r~~i~v~~P~~~er~~ 840 (976)
.||+|||++.+.... ...|..+++... ....+.|+.+. .+ ...|.. ....+.+ ....+++++.+.++...
T Consensus 125 ~vliiDe~~~l~~~~----~~~l~~l~~~~~~~~~~~~vvl~g-~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~ 199 (269)
T TIGR03015 125 ALLVVDEAQNLTPEL----LEELRMLSNFQTDNAKLLQIFLVG-QPEFRETLQSPQLQQLRQRIIASCHLGPLDREETRE 199 (269)
T ss_pred eEEEEECcccCCHHH----HHHHHHHhCcccCCCCeEEEEEcC-CHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHH
Confidence 899999999876433 222332322221 22333333332 22 012211 1111111 12567789999999999
Q ss_pred HHHHHHHHHHhhhhccCC-CCCCCCCCCCCCCCCCCCCCCCchhHHHHHH-HHHHHH
Q 002045 841 FLGRLIEAAVSVVLEGRS-KKPQESVSLPELPKVPTVESGPKASELKAKV-EAEQHA 895 (976)
Q Consensus 841 i~~~~l~~~~~~~~~~~~-~~~~~~~dl~~La~~~~~~sg~s~aelk~~~-ea~~~a 895 (976)
++...+... +.. .....+..++.|...+.|.++ .+..+| .+...+
T Consensus 200 ~l~~~l~~~------g~~~~~~~~~~~~~~i~~~s~G~p~----~i~~l~~~~~~~a 246 (269)
T TIGR03015 200 YIEHRLERA------GNRDAPVFSEGAFDAIHRFSRGIPR----LINILCDRLLLSA 246 (269)
T ss_pred HHHHHHHHc------CCCCCCCcCHHHHHHHHHHcCCccc----HHHHHHHHHHHHH
Confidence 999888731 000 011223345556666655543 566666 333433
No 484
>PRK06851 hypothetical protein; Provisional
Probab=97.98 E-value=3.4e-05 Score=86.87 Aligned_cols=36 Identities=31% Similarity=0.472 Sum_probs=30.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEE
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM 448 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~ 448 (976)
.+-++|.|+||||||++++.++..+...++.+.++.
T Consensus 30 ~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~ 65 (367)
T PRK06851 30 NRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLH 65 (367)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 456899999999999999999999987777666543
No 485
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.98 E-value=3.7e-05 Score=86.31 Aligned_cols=127 Identities=14% Similarity=0.196 Sum_probs=77.3
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCC-------CeeecCCcccccCCCCCChHHHHHHHHHHHHh----cCCceEeccc
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKF-------PVHSLGLPALLSDPSAKTPEEALVHIFGEARR----TTPSILYIPQ 772 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~-------~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~----~~p~ilfiDE 772 (976)
..+||+||+|+|||++|+++|+.+.+. .++.+... .+. .-+-..++.+...+.. ...-|++||+
T Consensus 27 ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~---~~~--~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ 101 (313)
T PRK05564 27 HAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI---NKK--SIGVDDIRNIIEEVNKKPYEGDKKVIIIYN 101 (313)
T ss_pred ceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc---cCC--CCCHHHHHHHHHHHhcCcccCCceEEEEec
Confidence 357999999999999999999976331 12222110 011 0112346666554432 2335999999
Q ss_pred cchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHH
Q 002045 773 FNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRL 845 (976)
Q Consensus 773 id~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~ 845 (976)
+|.+... ..+.|+..|+..+. ..++|+.| +.+ +.|.+ . .++.-.++.|.+|+.++...+++..
T Consensus 102 ad~m~~~----a~naLLK~LEepp~-~t~~il~~-~~~-~~ll~--T-I~SRc~~~~~~~~~~~~~~~~l~~~ 164 (313)
T PRK05564 102 SEKMTEQ----AQNAFLKTIEEPPK-GVFIILLC-ENL-EQILD--T-IKSRCQIYKLNRLSKEEIEKFISYK 164 (313)
T ss_pred hhhcCHH----HHHHHHHHhcCCCC-CeEEEEEe-CCh-HhCcH--H-HHhhceeeeCCCcCHHHHHHHHHHH
Confidence 9987644 34467777776543 33444444 555 44443 2 2331368889999999987777644
No 486
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.96 E-value=5.7e-06 Score=98.20 Aligned_cols=180 Identities=17% Similarity=0.183 Sum_probs=97.8
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcccccCC----CCCC----hHHHHHHHHHHHHhcCCceEeccccc
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDP----SAKT----PEEALVHIFGEARRTTPSILYIPQFN 774 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~~~----~~g~----~e~~~~~~f~~a~~~~p~ilfiDEid 774 (976)
.+++.|.+||||+++|+++..... ..+|+.+++..+-... ..|. ................++.||||||+
T Consensus 159 ~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~ 238 (463)
T TIGR01818 159 TVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIG 238 (463)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchh
Confidence 589999999999999999988642 4689999987652211 0010 00000000011123346889999999
Q ss_pred hhHHHHHHHHHHHHHHHH-hhCCC----CCCEEEEEecCCCcccCcCCCCCCcCC----c-cEEEecCCCHHHHHHHHHH
Q 002045 775 LWWENAHEQLRAVLLTLL-EELPS----HLPILLLGSSSVPLAEVEGDPSTVFPL----R-SVYQVEKPSTEDRSLFLGR 844 (976)
Q Consensus 775 ~l~~~~~~~~~~~l~~ll-~~~~~----~~~v~vi~ttn~~~~~Ld~~~~~~~~~----r-~~i~v~~P~~~er~~i~~~ 844 (976)
.|....+..+++.|..-- ..+.+ ..++.||+||+.....+-. ...|+. + .++.|..|...+|.+-+..
T Consensus 239 ~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~--~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~ 316 (463)
T TIGR01818 239 DMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVR--QGKFREDLFHRLNVIRIHLPPLRERREDIPR 316 (463)
T ss_pred hCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHH--cCCcHHHHHHHhCcceecCCCcccchhhHHH
Confidence 998877766554432110 00111 2367788898877333322 333331 1 4567888888777655555
Q ss_pred HHHHHHhhhhccCCC--CCCCCCCCCCCCCCCCCCCCCchhHHHHHH
Q 002045 845 LIEAAVSVVLEGRSK--KPQESVSLPELPKVPTVESGPKASELKAKV 889 (976)
Q Consensus 845 ~l~~~~~~~~~~~~~--~~~~~~dl~~La~~~~~~sg~s~aelk~~~ 889 (976)
++..++.......+. .......+..|..+ +|+| ..+||++++
T Consensus 317 l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~--~wpg-NvreL~~~~ 360 (463)
T TIGR01818 317 LARHFLALAARELDVEPKLLDPEALERLKQL--RWPG-NVRQLENLC 360 (463)
T ss_pred HHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC--CCCC-hHHHHHHHH
Confidence 554433322221111 11222334444444 3554 566777766
No 487
>PF05729 NACHT: NACHT domain
Probab=97.94 E-value=3.6e-05 Score=77.22 Aligned_cols=137 Identities=15% Similarity=0.230 Sum_probs=76.5
Q ss_pred eeeccCCCCcHhhHHHHHHHhhcCCC--------eeecCCcccccCCC-----------CCChHHHHHH-HHHHHHhcCC
Q 002045 706 LLLCGSEGTGVDHLGPAILHELEKFP--------VHSLGLPALLSDPS-----------AKTPEEALVH-IFGEARRTTP 765 (976)
Q Consensus 706 ~Ll~G~pGtGKT~lA~aia~~l~~~~--------~~~~~~~~l~~~~~-----------~g~~e~~~~~-~f~~a~~~~p 765 (976)
++|+|+||+|||++++.++..+.... ++.+.+...-..-. .......+.. +...+.....
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNKR 82 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCCc
Confidence 78999999999999999987643321 11222211111000 0011111111 1122334556
Q ss_pred ceEeccccchhHHHHH----HHHHHHHHHHHhh-CCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHH
Q 002045 766 SILYIPQFNLWWENAH----EQLRAVLLTLLEE-LPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSL 840 (976)
Q Consensus 766 ~ilfiDEid~l~~~~~----~~~~~~l~~ll~~-~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~ 840 (976)
.+|+||.+|.+..... ..+...|..++.. +.+...++|.+.+... ..+.. .+.....+.+...+..+..+
T Consensus 83 ~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~-~~~~~----~~~~~~~~~l~~~~~~~~~~ 157 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAF-PDLRR----RLKQAQILELEPFSEEDIKQ 157 (166)
T ss_pred eEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChH-HHHHH----hcCCCcEEEECCCCHHHHHH
Confidence 7899999999986433 2455556666665 3444444444333222 22221 22212578899999999999
Q ss_pred HHHHHHH
Q 002045 841 FLGRLIE 847 (976)
Q Consensus 841 i~~~~l~ 847 (976)
+++..+.
T Consensus 158 ~~~~~f~ 164 (166)
T PF05729_consen 158 YLRKYFS 164 (166)
T ss_pred HHHHHhh
Confidence 9998775
No 488
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.93 E-value=3.8e-05 Score=89.67 Aligned_cols=150 Identities=11% Similarity=0.165 Sum_probs=91.9
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecC-------CcccccCCC---------CCChHHHHHHHHHHHH----hc
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLG-------LPALLSDPS---------AKTPEEALVHIFGEAR----RT 763 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~-------~~~l~~~~~---------~g~~e~~~~~~f~~a~----~~ 763 (976)
.+.||+||-|||||++|+.+|+.++..+-.... |-.+..+.+ ....-..+|.+.+.+. ..
T Consensus 39 hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ 118 (515)
T COG2812 39 HAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEG 118 (515)
T ss_pred hhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccc
Confidence 369999999999999999999987554311100 001110100 0112235666666654 23
Q ss_pred CCceEeccccchhHHHHHHHHHHHHHHHHhhCC--CCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHH
Q 002045 764 TPSILYIPQFNLWWENAHEQLRAVLLTLLEELP--SHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLF 841 (976)
Q Consensus 764 ~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~--~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i 841 (976)
..-|.+|||+|.|... .++.||+-++ +.+-+||+|||+- .-++. ..+-| -..|.|..-+.++....
T Consensus 119 ryKVyiIDEvHMLS~~-------afNALLKTLEEPP~hV~FIlATTe~--~Kip~--TIlSR-cq~f~fkri~~~~I~~~ 186 (515)
T COG2812 119 RYKVYIIDEVHMLSKQ-------AFNALLKTLEEPPSHVKFILATTEP--QKIPN--TILSR-CQRFDFKRLDLEEIAKH 186 (515)
T ss_pred cceEEEEecHHhhhHH-------HHHHHhcccccCccCeEEEEecCCc--CcCch--hhhhc-cccccccCCCHHHHHHH
Confidence 3569999999987643 3555665553 3556666666664 45665 22222 24677888899999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCC
Q 002045 842 LGRLIEAAVSVVLEGRSKKPQESVSLPELPKVP 874 (976)
Q Consensus 842 ~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~ 874 (976)
|..++.+ .....++..|..|+++.
T Consensus 187 L~~i~~~---------E~I~~e~~aL~~ia~~a 210 (515)
T COG2812 187 LAAILDK---------EGINIEEDALSLIARAA 210 (515)
T ss_pred HHHHHHh---------cCCccCHHHHHHHHHHc
Confidence 9888874 23444455566666665
No 489
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.93 E-value=3.8e-05 Score=90.51 Aligned_cols=189 Identities=20% Similarity=0.241 Sum_probs=108.5
Q ss_pred cccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhH
Q 002045 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWV 459 (976)
Q Consensus 380 ~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~ 459 (976)
.++|.......+...+.. + ......++|+|.+||||+++|+++....... ..+|+.++|..+....+
T Consensus 140 ~lig~s~~~~~~~~~i~~----------~-~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~--~~~~i~~~c~~~~~~~~ 206 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIAL----------V-APSEATVLIHGDSGTGKELVARAIHASSARS--EKPLVTLNCAALNESLL 206 (441)
T ss_pred ceEecCHHHHHHHHHHhh----------c-cCCCCeEEEEecCCCCHHHHHHHHHHcCCCC--CCCeeeeeCCCCCHHHH
Confidence 355655555555443322 1 1345689999999999999999998765432 36788899876543222
Q ss_pred hHHHHHHHHHHHH---------------HHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCC-------
Q 002045 460 GEAERQLKLLFEE---------------AQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS------- 517 (976)
Q Consensus 460 g~~~~~l~~~f~~---------------a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~------- 517 (976)
.. .+|.. .....+.+||||||+.|. ..++..|+..++.-..
T Consensus 207 ~~------~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~-----------~~~q~~l~~~l~~~~~~~~~~~~ 269 (441)
T PRK10365 207 ES------ELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS-----------PMMQVRLLRAIQEREVQRVGSNQ 269 (441)
T ss_pred HH------HhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCC-----------HHHHHHHHHHHccCcEEeCCCCc
Confidence 11 11110 112235699999999984 3455667777653210
Q ss_pred --CCcEEEEecCCCccccchhhcCCCCCcc-------ccCCCCCCHHHH----HHHHHHHHhcC----C---CCCCHHHH
Q 002045 518 --RGQVVLIGATNRVDAIDGALRRPGRFDR-------EFNFPLPGCEAR----AEILDIHTRKW----K---QPPSRELK 577 (976)
Q Consensus 518 --~~~vivI~atn~~~~ld~aL~r~gRf~~-------~i~~~~P~~~er----~~Il~~~l~~~----~---~~~~~~~l 577 (976)
..++.||++|+..- . .+..+|+|.. .+.+..|...+| ..++..++..+ . ..++.+.+
T Consensus 270 ~~~~~~rii~~t~~~~--~-~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~ 346 (441)
T PRK10365 270 TISVDVRLIAATHRDL--A-AEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAM 346 (441)
T ss_pred eeeeceEEEEeCCCCH--H-HHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHH
Confidence 11456777766521 1 1222344422 344555555544 34444444432 1 23677777
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHH
Q 002045 578 SELAASCVGYCGADLKALCTEAAI 601 (976)
Q Consensus 578 ~~lA~~t~G~s~~dI~~l~~~A~~ 601 (976)
..|..+.=--+.+++.++++.++.
T Consensus 347 ~~L~~~~wpgN~reL~~~~~~~~~ 370 (441)
T PRK10365 347 DLLIHYDWPGNIRELENAVERAVV 370 (441)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHH
Confidence 777766534466788888887664
No 490
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.93 E-value=2.7e-05 Score=93.39 Aligned_cols=176 Identities=16% Similarity=0.114 Sum_probs=106.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhHhHH--HHHH--------HHHHHHHHhcCCcEEEE
Q 002045 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEA--ERQL--------KLLFEEAQRNQPSIIFF 483 (976)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~g~~--~~~l--------~~~f~~a~~~~p~VL~i 483 (976)
.||||.|+.|||||+++++++..+.. ..+|..+..+--....+|.. +..+ ..++..|.. .||||
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~---~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~l 99 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPA---GTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVL 99 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCC---CCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEe
Confidence 58999999999999999999998753 13443332222112223321 1111 112222222 49999
Q ss_pred ccccccCCCCCChhhhhHHHHHHHHHHHhhccC-----------CCCcEEEEecCCCc---cccchhhcCCCCCccccCC
Q 002045 484 DEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-----------SRGQVVLIGATNRV---DAIDGALRRPGRFDREFNF 549 (976)
Q Consensus 484 DEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~-----------~~~~vivI~atn~~---~~ld~aL~r~gRf~~~i~~ 549 (976)
||+..+ ...+++.|+..|+.-. ....+++|++.|.. ..|+++|+. ||+..+.+
T Consensus 100 De~n~~-----------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v 166 (584)
T PRK13406 100 AMAERL-----------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDL 166 (584)
T ss_pred cCcccC-----------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEc
Confidence 999776 5678999999997421 12467888875432 238888998 99999999
Q ss_pred CCCCHHHHH-------HHHHHHHhcCCCCCCHHHHHHHHHHcc--CC-CHHHHHHHHHHHHHHHHHhhC
Q 002045 550 PLPGCEARA-------EILDIHTRKWKQPPSRELKSELAASCV--GY-CGADLKALCTEAAIRAFREKY 608 (976)
Q Consensus 550 ~~P~~~er~-------~Il~~~l~~~~~~~~~~~l~~lA~~t~--G~-s~~dI~~l~~~A~~~a~~~~~ 608 (976)
+.++..+.. .|....-.--...+++..+..++..+. |. +.+....+++-|...|..+..
T Consensus 167 ~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr 235 (584)
T PRK13406 167 DGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGR 235 (584)
T ss_pred CCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCC
Confidence 988765432 233222211245566776666554433 33 445555556666655555443
No 491
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.92 E-value=4.6e-05 Score=81.33 Aligned_cols=125 Identities=14% Similarity=0.092 Sum_probs=80.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCc-----------------EEEEEecchhHHhhhHhHHHHHHHHHHHHH
Q 002045 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQK-----------------VSFYMRKGADVLSKWVGEAERQLKLLFEEA 473 (976)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~-----------------~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a 473 (976)
.++..+||+||.|+||..+|.++|+.+...... ..++.+.... ....+.+.....+.+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~-~~I~id~ir~l~~~l~~~s 83 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQK-NPIKKEDALSIINKLNRPS 83 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCc-ccCCHHHHHHHHHHHccCc
Confidence 456789999999999999999999887543211 1111111110 0011222222222222222
Q ss_pred -HhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCC
Q 002045 474 -QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLP 552 (976)
Q Consensus 474 -~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P 552 (976)
..+..-|++|+++|.| .....+.||..++. ...++++|.+|+.++.+-+.+++ |+ ..+.|+.+
T Consensus 84 ~e~~~~KV~II~~ae~m-----------~~~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RC-q~~~~~~~ 147 (261)
T PRK05818 84 VESNGKKIYIIYGIEKL-----------NKQSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RC-VQYVVLSK 147 (261)
T ss_pred hhcCCCEEEEeccHhhh-----------CHHHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--he-eeeecCCh
Confidence 1223469999999988 45677889999994 56678888889989999999999 76 44667666
No 492
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.91 E-value=2.8e-05 Score=72.63 Aligned_cols=25 Identities=40% Similarity=0.704 Sum_probs=22.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhc
Q 002045 416 VLLCGPPGTGKTLIARALACAASKA 440 (976)
Q Consensus 416 vLL~GppGtGKT~laralA~~l~~~ 440 (976)
|+|+||||+|||++|+.||+.+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999988643
No 493
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.90 E-value=4.5e-05 Score=85.13 Aligned_cols=133 Identities=21% Similarity=0.192 Sum_probs=81.4
Q ss_pred CCceeeccCCCCcHhhHHHHHHHhhcCCC---------eeecCCccccc--C-C-CCCC--------------------h
Q 002045 703 RPRLLLCGSEGTGVDHLGPAILHELEKFP---------VHSLGLPALLS--D-P-SAKT--------------------P 749 (976)
Q Consensus 703 ~~~~Ll~G~pGtGKT~lA~aia~~l~~~~---------~~~~~~~~l~~--~-~-~~g~--------------------~ 749 (976)
++.+||+||+|+||+++|.++|..+-+.. +...+-|+++- . | ..|. .
T Consensus 26 ~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~ 105 (314)
T PRK07399 26 APAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIR 105 (314)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhccccccccccCc
Confidence 35799999999999999999999863321 11112222220 0 0 0011 0
Q ss_pred HHHHHHHHHHHHh----cCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCc
Q 002045 750 EEALVHIFGEARR----TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLR 825 (976)
Q Consensus 750 e~~~~~~f~~a~~----~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r 825 (976)
-..++.+...+.. ....|++||++|.+... ..+.|+..|+..+ . .+||+ +|+.+ +.|.+ . +++.-
T Consensus 106 id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~----aaNaLLK~LEEPp-~-~~fIL-i~~~~-~~Ll~--T-I~SRc 174 (314)
T PRK07399 106 LEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEA----AANALLKTLEEPG-N-GTLIL-IAPSP-ESLLP--T-IVSRC 174 (314)
T ss_pred HHHHHHHHHHHccCcccCCceEEEEEchhhcCHH----HHHHHHHHHhCCC-C-CeEEE-EECCh-HhCcH--H-HHhhc
Confidence 1245666554432 34579999999987654 3445777777765 3 45555 44556 44444 2 33323
Q ss_pred cEEEecCCCHHHHHHHHHHHH
Q 002045 826 SVYQVEKPSTEDRSLFLGRLI 846 (976)
Q Consensus 826 ~~i~v~~P~~~er~~i~~~~l 846 (976)
.++.|.+|+.++..++++...
T Consensus 175 q~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 175 QIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred eEEecCCCCHHHHHHHHHHhh
Confidence 688899999999988888553
No 494
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.89 E-value=2.8e-05 Score=88.13 Aligned_cols=106 Identities=25% Similarity=0.402 Sum_probs=62.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHHhh-cCCcEEEEEecch--hHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccc
Q 002045 410 ITPPRGVLLCGPPGTGKTLIARALACAASK-AGQKVSFYMRKGA--DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEI 486 (976)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~~-~~~~~~~~~~~~~--~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEi 486 (976)
..+++|++||||+|+|||+|.-+....+.. ...+++|...-.. .-+..+.|. ..-+..+.+..... ..||+|||+
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~-~~~l~~va~~l~~~-~~lLcfDEF 136 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQ-DDPLPQVADELAKE-SRLLCFDEF 136 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCC-CccHHHHHHHHHhc-CCEEEEeee
Confidence 467899999999999999999999888754 2234444321110 011111111 11122333333332 239999999
Q ss_pred cccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCC
Q 002045 487 DGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (976)
Q Consensus 487 d~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~ 529 (976)
+-- +-....++..|+..+- ..++++|+|+|.
T Consensus 137 ~V~--------DiaDAmil~rLf~~l~----~~gvvlVaTSN~ 167 (362)
T PF03969_consen 137 QVT--------DIADAMILKRLFEALF----KRGVVLVATSNR 167 (362)
T ss_pred ecc--------chhHHHHHHHHHHHHH----HCCCEEEecCCC
Confidence 743 1224566666776554 246888999987
No 495
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.89 E-value=8.8e-05 Score=74.02 Aligned_cols=104 Identities=14% Similarity=0.180 Sum_probs=60.5
Q ss_pred eeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCccccc----------------------CCC-CCChHHHHHHHHHHH
Q 002045 706 LLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLS----------------------DPS-AKTPEEALVHIFGEA 760 (976)
Q Consensus 706 ~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~----------------------~~~-~g~~e~~~~~~f~~a 760 (976)
++|+|+||+|||+++..++..+. +.+++.++...... .+. ....+.....++..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 68999999999999999988753 23444444322111 100 011111222345556
Q ss_pred HhcCCceEeccccchhHHHHH-------HHHHHHHHHHHhhCCCCCCEEEEEecCCC
Q 002045 761 RRTTPSILYIPQFNLWWENAH-------EQLRAVLLTLLEELPSHLPILLLGSSSVP 810 (976)
Q Consensus 761 ~~~~p~ilfiDEid~l~~~~~-------~~~~~~l~~ll~~~~~~~~v~vi~ttn~~ 810 (976)
....|.+|+|||+..+..... ..+.+.|..++..+... ++-||++++..
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~vv~~~~~~ 137 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKG-GVTVIFTLQVP 137 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcC-CceEEEEEecC
Confidence 677889999999999875432 23445555555555433 44444454444
No 496
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.89 E-value=1.3e-05 Score=86.58 Aligned_cols=139 Identities=21% Similarity=0.254 Sum_probs=96.0
Q ss_pred eeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCccccc--------CCCCCChHHHHHHHHHHHHhcCCceEeccccch
Q 002045 706 LLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLS--------DPSAKTPEEALVHIFGEARRTTPSILYIPQFNL 775 (976)
Q Consensus 706 ~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~--------~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~ 775 (976)
+||.|.+||||.++|+++..... ..||+.++|+.+-. +|-.|. +--..+|+.|.. +-||+|||-.
T Consensus 230 LLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg~--~gk~GffE~Ang---GTVlLDeIgE 304 (511)
T COG3283 230 LLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGD--EGKKGFFEQANG---GTVLLDEIGE 304 (511)
T ss_pred eEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCCC--CCccchhhhccC---CeEEeehhhh
Confidence 89999999999999999887532 37999999975522 232332 223456776654 4699999998
Q ss_pred hHHHHHHHHHHHHHHHHhhCC---------CCCCEEEEEecCCCcccCcCCCCCCcCCc-----cEEEecCCCHHHHHHH
Q 002045 776 WWENAHEQLRAVLLTLLEELP---------SHLPILLLGSSSVPLAEVEGDPSTVFPLR-----SVYQVEKPSTEDRSLF 841 (976)
Q Consensus 776 l~~~~~~~~~~~l~~ll~~~~---------~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r-----~~i~v~~P~~~er~~i 841 (976)
+.+.-+.. |+.+|++-. -.-+|-|||||..+...|-. .+.|+.. +|..+..|...+|..-
T Consensus 305 mSp~lQaK----LLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~--~g~fReDLfyRLNVLtl~~PpLRer~~d 378 (511)
T COG3283 305 MSPRLQAK----LLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQ--KGKFREDLFYRLNVLTLNLPPLRERPQD 378 (511)
T ss_pred cCHHHHHH----HHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHh--cCchHHHHHHHhheeeecCCccccCccc
Confidence 77655544 556665421 14478999999988555555 5555543 8999999999999876
Q ss_pred HHHHHHHHHhhhhc
Q 002045 842 LGRLIEAAVSVVLE 855 (976)
Q Consensus 842 ~~~~l~~~~~~~~~ 855 (976)
+.-+..-+...+.+
T Consensus 379 i~pL~e~Fv~q~s~ 392 (511)
T COG3283 379 IMPLAELFVQQFSD 392 (511)
T ss_pred chHHHHHHHHHHHH
Confidence 66665554444433
No 497
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.88 E-value=3.3e-05 Score=77.11 Aligned_cols=76 Identities=28% Similarity=0.347 Sum_probs=48.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh--HHhh------------------h--HhHHHHHHHHHHHHH
Q 002045 416 VLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD--VLSK------------------W--VGEAERQLKLLFEEA 473 (976)
Q Consensus 416 vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~--l~~~------------------~--~g~~~~~l~~~f~~a 473 (976)
++|+||||+|||+++..++..+...+..+.|+...... .... + ..............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 78999999999999999999987665555555443221 1100 0 000111112234455
Q ss_pred HhcCCcEEEEccccccCC
Q 002045 474 QRNQPSIIFFDEIDGLAP 491 (976)
Q Consensus 474 ~~~~p~VL~iDEid~L~~ 491 (976)
....+.+|+|||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 566788999999998864
No 498
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=97.87 E-value=6.6e-06 Score=101.09 Aligned_cols=78 Identities=27% Similarity=0.388 Sum_probs=72.1
Q ss_pred HhhhhhhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 899 LRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 899 Lr~~L~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
+...+..+++++...+...+|..||+...+++||.||+.||||.|+++.+....|.+-++|+.|+.||++|..+||.|
T Consensus 1262 ~ss~l~~i~n~~~~~~~t~~f~~Pv~~k~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~ 1339 (1563)
T KOG0008|consen 1262 LSSILETIINQARSSPNTYPFPTPVNAKEVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGP 1339 (1563)
T ss_pred cccchHHHHHHHhcCCCCcCCCCccchhhccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCc
Confidence 445666777888888889999999999999999999999999999999999999999999999999999999999975
No 499
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.87 E-value=3.7e-05 Score=71.78 Aligned_cols=86 Identities=16% Similarity=0.202 Sum_probs=51.6
Q ss_pred eeeccCCCCcHhhHHHHHHHhhcC-------CCeeecCC-cccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhH
Q 002045 706 LLLCGSEGTGVDHLGPAILHELEK-------FPVHSLGL-PALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWW 777 (976)
Q Consensus 706 ~Ll~G~pGtGKT~lA~aia~~l~~-------~~~~~~~~-~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~ 777 (976)
|.|+|+||+|||++|+.|+..+.. ..++..+. ....++| ..+ .|++|||+....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY-----------------~~q-~vvi~DD~~~~~ 62 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGY-----------------QGQ-PVVIIDDFGQDN 62 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhcc-----------------CCC-cEEEEeecCccc
Confidence 579999999999999999987531 12222121 2233333 222 577899999876
Q ss_pred HHHHHHHHHHHHHHHhhCC-------------CCCCEEEEEecCC
Q 002045 778 ENAHEQLRAVLLTLLEELP-------------SHLPILLLGSSSV 809 (976)
Q Consensus 778 ~~~~~~~~~~l~~ll~~~~-------------~~~~v~vi~ttn~ 809 (976)
..........|+.+++..+ .....+||+|||.
T Consensus 63 ~~~~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 63 DGYNYSDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred cccchHHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCCC
Confidence 4422234555666665421 1334677888873
No 500
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.86 E-value=3.6e-06 Score=91.35 Aligned_cols=65 Identities=32% Similarity=0.428 Sum_probs=59.9
Q ss_pred ccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 912 YDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 912 ~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
.+..-..|..||.+...|+|.++|+.|||+.|++.|++.++|.++-+|..|.+||+.||..||.+
T Consensus 33 sKdp~q~fafplt~~map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~ 97 (418)
T KOG1828|consen 33 SKDPKQKFAFPLTDKMAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLH 97 (418)
T ss_pred ccChhhhhccccchhhccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcC
Confidence 34445668889999999999999999999999999999999999999999999999999999964
Done!