Query 002045
Match_columns 976
No_of_seqs 864 out of 5350
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 10:02:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002045.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002045hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 1.9E-77 6.6E-82 728.7 26.5 526 374-935 199-759 (806)
2 1ypw_A Transitional endoplasmi 100.0 5.8E-55 2E-59 542.0 28.0 489 374-898 199-701 (806)
3 4b4t_J 26S protease regulatory 100.0 3.4E-44 1.1E-48 403.4 23.8 249 372-642 141-392 (405)
4 4b4t_I 26S protease regulatory 100.0 3.3E-43 1.1E-47 395.5 23.5 251 371-643 174-427 (437)
5 4b4t_M 26S protease regulatory 100.0 1.7E-42 5.8E-47 395.8 23.8 253 372-646 174-429 (434)
6 4b4t_H 26S protease regulatory 100.0 2.6E-42 8.7E-47 392.1 23.8 248 372-641 202-452 (467)
7 4b4t_L 26S protease subunit RP 100.0 2.2E-42 7.5E-47 395.2 23.2 250 372-643 174-426 (437)
8 4b4t_K 26S protease regulatory 100.0 3E-41 1E-45 385.4 22.0 246 372-639 165-414 (428)
9 3cf2_A TER ATPase, transitiona 100.0 1.4E-39 4.6E-44 396.4 14.0 285 349-643 451-747 (806)
10 4b4t_J 26S protease regulatory 100.0 7.8E-36 2.7E-40 335.5 13.4 229 640-898 131-372 (405)
11 4b4t_I 26S protease regulatory 100.0 5.2E-35 1.8E-39 329.1 11.6 222 647-898 172-406 (437)
12 3hu3_A Transitional endoplasmi 100.0 1.3E-33 4.3E-38 330.9 21.0 285 374-664 199-484 (489)
13 4b4t_L 26S protease subunit RP 100.0 2.2E-34 7.6E-39 329.1 13.3 227 642-898 166-405 (437)
14 2x8a_A Nuclear valosin-contain 100.0 2.1E-33 7.1E-38 306.3 19.3 261 374-645 5-270 (274)
15 4b4t_M 26S protease regulatory 100.0 7E-34 2.4E-38 324.7 15.7 225 644-898 168-405 (434)
16 1xwi_A SKD1 protein; VPS4B, AA 100.0 4.8E-33 1.6E-37 310.8 20.0 229 373-608 6-235 (322)
17 3eie_A Vacuolar protein sortin 100.0 1.2E-32 4E-37 308.2 21.3 230 372-609 11-241 (322)
18 4b4t_H 26S protease regulatory 100.0 1.3E-33 4.6E-38 320.7 13.2 220 649-898 201-433 (467)
19 4b4t_K 26S protease regulatory 100.0 2E-33 7E-38 320.8 12.5 221 648-898 163-397 (428)
20 3cf0_A Transitional endoplasmi 100.0 2.3E-32 7.7E-37 302.9 18.6 264 373-642 9-284 (301)
21 2qp9_X Vacuolar protein sortin 100.0 6.4E-32 2.2E-36 305.9 21.2 226 374-607 46-272 (355)
22 1r6b_X CLPA protein; AAA+, N-t 100.0 7.4E-31 2.5E-35 326.9 30.5 419 375-849 182-669 (758)
23 3pxi_A Negative regulator of g 100.0 2.7E-30 9.2E-35 321.4 26.7 411 375-850 176-679 (758)
24 2zan_A Vacuolar protein sortin 100.0 5.8E-31 2E-35 306.6 18.8 229 373-608 128-357 (444)
25 2ce7_A Cell division protein F 100.0 2.5E-30 8.6E-35 300.3 23.3 246 374-642 11-259 (476)
26 3h4m_A Proteasome-activating n 100.0 1.2E-29 4E-34 278.7 22.0 248 373-642 11-261 (285)
27 2qz4_A Paraplegin; AAA+, SPG7, 100.0 2E-29 6.9E-34 273.0 19.0 248 374-643 1-253 (262)
28 3d8b_A Fidgetin-like protein 1 100.0 8.2E-29 2.8E-33 280.8 22.1 258 374-643 79-338 (357)
29 3b9p_A CG5977-PA, isoform A; A 100.0 7.9E-29 2.7E-33 273.8 19.5 258 374-643 16-276 (297)
30 1lv7_A FTSH; alpha/beta domain 100.0 1E-28 3.5E-33 267.1 19.9 244 374-640 7-253 (257)
31 1qvr_A CLPB protein; coiled co 100.0 1.6E-28 5.6E-33 308.5 22.7 207 375-604 166-393 (854)
32 2dhr_A FTSH; AAA+ protein, hex 100.0 2.1E-28 7.3E-33 285.7 20.1 247 374-643 26-275 (499)
33 3vfd_A Spastin; ATPase, microt 100.0 3.3E-28 1.1E-32 279.3 20.8 258 373-642 109-368 (389)
34 1ixz_A ATP-dependent metallopr 99.9 5.3E-27 1.8E-31 253.2 22.7 241 373-636 10-253 (254)
35 1ypw_A Transitional endoplasmi 99.9 2.5E-29 8.7E-34 312.1 0.2 265 372-642 470-746 (806)
36 1iy2_A ATP-dependent metallopr 99.9 7.5E-26 2.6E-30 247.6 24.1 242 372-636 33-277 (278)
37 2r62_A Cell division protease 99.9 2.7E-28 9.2E-33 265.4 0.7 250 374-646 6-260 (268)
38 3cf0_A Transitional endoplasmi 99.9 4.1E-26 1.4E-30 252.6 9.6 225 644-898 2-239 (301)
39 1xwi_A SKD1 protein; VPS4B, AA 99.9 3.2E-26 1.1E-30 255.6 7.8 223 649-900 4-235 (322)
40 3eie_A Vacuolar protein sortin 99.9 1.9E-25 6.4E-30 249.7 5.3 224 648-901 9-241 (322)
41 2x8a_A Nuclear valosin-contain 99.9 1.3E-24 4.5E-29 236.7 11.3 224 650-898 3-236 (274)
42 2qp9_X Vacuolar protein sortin 99.9 5.1E-25 1.7E-29 249.2 5.4 222 649-900 43-273 (355)
43 2c9o_A RUVB-like 1; hexameric 99.9 1.6E-24 5.5E-29 253.5 5.6 203 374-598 32-262 (456)
44 2zan_A Vacuolar protein sortin 99.9 1.7E-24 5.7E-29 252.2 2.5 224 648-900 125-357 (444)
45 2ce7_A Cell division protein F 99.9 7.5E-23 2.6E-27 237.6 14.5 215 652-897 11-238 (476)
46 3t15_A Ribulose bisphosphate c 99.9 6.8E-23 2.3E-27 225.7 9.2 175 408-594 31-222 (293)
47 3hu3_A Transitional endoplasmi 99.9 1.5E-22 5.2E-27 237.0 12.5 217 652-898 199-425 (489)
48 3h4m_A Proteasome-activating n 99.9 8.2E-22 2.8E-26 216.1 13.9 218 651-898 11-241 (285)
49 1lv7_A FTSH; alpha/beta domain 99.9 1.5E-21 5.1E-26 210.8 15.2 217 651-898 6-235 (257)
50 3d8b_A Fidgetin-like protein 1 99.9 2.6E-22 8.8E-27 227.4 6.8 221 650-900 77-307 (357)
51 3b9p_A CG5977-PA, isoform A; A 99.8 2.6E-22 8.9E-27 221.5 3.9 221 650-900 14-245 (297)
52 2dhr_A FTSH; AAA+ protein, hex 99.8 3.4E-21 1.2E-25 224.9 12.8 215 652-897 26-253 (499)
53 3vfd_A Spastin; ATPase, microt 99.8 6.3E-22 2.1E-26 227.0 5.4 227 644-900 102-338 (389)
54 2qz4_A Paraplegin; AAA+, SPG7, 99.8 4.2E-21 1.4E-25 207.5 11.6 216 653-897 2-231 (262)
55 3syl_A Protein CBBX; photosynt 99.8 1.6E-20 5.4E-25 208.3 15.0 218 380-607 32-266 (309)
56 1g41_A Heat shock protein HSLU 99.8 1.1E-20 3.9E-25 216.1 10.5 169 380-562 16-189 (444)
57 3t15_A Ribulose bisphosphate c 99.8 5.1E-21 1.7E-25 210.7 6.9 162 703-883 36-221 (293)
58 1ixz_A ATP-dependent metallopr 99.8 6.5E-20 2.2E-24 197.6 14.7 218 650-898 9-239 (254)
59 2r62_A Cell division protease 99.8 6.7E-21 2.3E-25 206.9 5.5 213 652-895 6-233 (268)
60 3dai_A ATPase family AAA domai 99.8 2.3E-19 7.9E-24 171.7 9.7 86 891-976 3-88 (130)
61 1iy2_A ATP-dependent metallopr 99.8 5.5E-19 1.9E-23 193.0 13.6 216 651-897 34-262 (278)
62 3uk6_A RUVB-like 2; hexameric 99.8 5.6E-18 1.9E-22 192.5 19.0 223 374-639 39-330 (368)
63 3d7c_A General control of amin 99.8 1.2E-18 4E-23 162.5 8.4 78 899-976 8-85 (112)
64 2i7k_A Bromodomain-containing 99.8 1.3E-18 4.5E-23 162.8 8.6 78 899-976 9-86 (117)
65 2d9e_A Peregrin; four-helix bu 99.7 1.5E-18 5.1E-23 163.7 7.7 76 901-976 10-85 (121)
66 2oss_A HUNK1 protein, bromodom 99.7 2.9E-18 9.7E-23 163.2 8.4 78 899-976 22-101 (127)
67 4alg_A Bromodomain-containing 99.7 3.2E-18 1.1E-22 168.2 8.4 79 898-976 32-112 (154)
68 3hme_A Bromodomain-containing 99.7 4.1E-18 1.4E-22 161.2 8.1 78 899-976 14-91 (123)
69 3nxb_A CAT eye syndrome critic 99.7 3.2E-18 1.1E-22 160.7 6.8 78 899-976 17-94 (116)
70 1ofh_A ATP-dependent HSL prote 99.7 1.3E-17 4.6E-22 184.4 13.1 243 380-639 16-299 (310)
71 1e6i_A Transcriptional activat 99.7 4.6E-18 1.6E-22 160.4 7.7 73 904-976 19-91 (121)
72 2dat_A Possible global transcr 99.7 6.8E-18 2.3E-22 159.9 8.3 64 913-976 34-97 (123)
73 3q2e_A Bromodomain and WD repe 99.7 6.7E-18 2.3E-22 160.1 8.2 78 899-976 11-88 (123)
74 3g0l_A Hwalp4, bromodomain adj 99.7 7.1E-18 2.4E-22 158.6 8.1 73 904-976 19-91 (117)
75 3rcw_A Bromodomain-containing 99.7 7.2E-18 2.4E-22 162.7 7.9 79 898-976 13-91 (135)
76 3mb3_A PH-interacting protein; 99.7 8.6E-18 3E-22 162.1 8.1 78 899-976 22-99 (135)
77 3m6a_A ATP-dependent protease 99.7 1.2E-17 4E-22 198.9 10.6 232 375-639 77-341 (543)
78 3p1f_A CREB-binding protein; s 99.7 7.4E-18 2.5E-22 158.9 7.0 78 899-976 12-92 (119)
79 3hws_A ATP-dependent CLP prote 99.7 4.8E-17 1.6E-21 184.7 14.5 241 381-637 17-347 (363)
80 3pfi_A Holliday junction ATP-d 99.7 3E-16 1E-20 176.1 20.3 196 375-605 25-236 (338)
81 2grc_A Probable global transcr 99.7 1.5E-17 5E-22 158.8 8.0 65 912-976 32-96 (129)
82 2z4s_A Chromosomal replication 99.7 3.3E-16 1.1E-20 181.9 20.9 228 372-640 98-333 (440)
83 3mb4_A Protein polybromo-1; PB 99.7 1.6E-17 5.6E-22 157.6 7.9 64 913-976 36-99 (124)
84 2dkw_A Hypothetical protein KI 99.7 7.4E-18 2.5E-22 160.7 5.1 78 894-976 8-85 (131)
85 3uv4_A Second bromodomain of h 99.7 2.5E-17 8.7E-22 162.2 8.6 78 899-976 30-108 (158)
86 3mqm_A Probable histone-lysine 99.7 1.8E-17 6.2E-22 157.8 7.3 64 913-976 30-93 (126)
87 3jvl_A Bromodomain-containing 99.7 1.5E-17 5.1E-22 157.1 6.3 73 904-976 15-92 (120)
88 3cmw_A Protein RECA, recombina 99.7 3.2E-18 1.1E-22 221.5 2.0 111 703-815 1080-1223(1706)
89 3k2j_A Protein polybromo-1; PB 99.7 3E-17 1E-21 156.5 8.2 65 912-976 37-101 (130)
90 2ouo_A HUNK1 protein, bromodom 99.7 3.5E-17 1.2E-21 156.3 8.6 73 904-976 28-105 (130)
91 1d2n_A N-ethylmaleimide-sensit 99.7 1.9E-16 6.6E-21 172.2 15.6 206 379-600 33-246 (272)
92 3ljw_A Protein polybromo-1; al 99.7 2.7E-17 9.2E-22 155.2 7.4 65 912-976 28-92 (120)
93 3fkm_X Signaling protein; brom 99.7 2.1E-17 7.2E-22 164.4 6.1 78 899-976 22-101 (166)
94 2chg_A Replication factor C sm 99.7 5.3E-16 1.8E-20 161.9 16.6 191 374-600 12-208 (226)
95 3iu5_A Protein polybromo-1; PB 99.7 5.2E-17 1.8E-21 152.3 6.9 64 913-976 26-89 (116)
96 1l8q_A Chromosomal replication 99.7 1.9E-15 6.3E-20 168.8 20.6 202 373-602 5-214 (324)
97 2yyn_A Transcription intermedi 99.7 7.9E-17 2.7E-21 154.9 8.1 72 904-976 26-99 (135)
98 3tlp_A Protein polybromo-1; PB 99.7 2E-16 6.7E-21 155.4 10.7 84 893-976 26-109 (150)
99 1hqc_A RUVB; extended AAA-ATPa 99.6 1.7E-15 5.8E-20 168.8 17.9 192 375-600 8-215 (324)
100 3bos_A Putative DNA replicatio 99.6 1.4E-15 4.7E-20 161.4 15.4 196 374-606 23-227 (242)
101 3cmw_A Protein RECA, recombina 99.6 9.4E-16 3.2E-20 198.6 16.7 156 374-530 1015-1218(1706)
102 1um8_A ATP-dependent CLP prote 99.6 2.3E-15 7.9E-20 171.6 16.9 243 380-639 22-365 (376)
103 2ri7_A Nucleosome-remodeling f 99.6 2.7E-16 9.1E-21 159.0 8.0 75 902-976 76-150 (174)
104 3pxg_A Negative regulator of g 99.6 8.5E-16 2.9E-20 179.9 13.1 193 375-605 176-387 (468)
105 3pvs_A Replication-associated 99.6 3.2E-15 1.1E-19 173.4 17.2 208 375-640 22-245 (447)
106 2v1u_A Cell division control p 99.6 1.3E-14 4.4E-19 165.3 21.1 231 375-639 15-276 (387)
107 1jbk_A CLPB protein; beta barr 99.6 2.2E-15 7.6E-20 153.4 12.1 164 375-561 18-194 (195)
108 1njg_A DNA polymerase III subu 99.6 1E-14 3.5E-19 154.1 17.3 192 374-600 18-232 (250)
109 4fcw_A Chaperone protein CLPB; 99.6 3.6E-15 1.2E-19 165.1 14.4 209 380-607 18-282 (311)
110 3te6_A Regulatory protein SIR3 99.6 3.8E-15 1.3E-19 163.9 14.0 203 381-607 22-290 (318)
111 4akg_A Glutathione S-transfera 99.6 8.7E-15 3E-19 197.6 19.7 332 412-776 1266-1679(2695)
112 2c9o_A RUVB-like 1; hexameric 99.6 2.2E-17 7.5E-22 193.1 -5.8 139 703-847 63-240 (456)
113 1iqp_A RFCS; clamp loader, ext 99.6 1.6E-14 5.5E-19 160.7 17.6 194 374-599 20-215 (327)
114 3u61_B DNA polymerase accessor 99.6 1.5E-14 5E-19 161.4 15.8 185 374-598 21-218 (324)
115 3uv5_A Transcription initiatio 99.6 1.7E-15 5.8E-20 163.1 7.8 79 898-976 14-92 (265)
116 2chq_A Replication factor C sm 99.6 9.3E-15 3.2E-19 162.1 13.8 194 374-599 12-207 (319)
117 3pxi_A Negative regulator of g 99.6 9.9E-15 3.4E-19 181.4 14.4 205 379-606 491-727 (758)
118 1sxj_A Activator 1 95 kDa subu 99.6 6.1E-15 2.1E-19 175.0 11.7 194 374-586 34-243 (516)
119 1sxj_B Activator 1 37 kDa subu 99.6 2.7E-14 9.4E-19 158.6 15.8 191 374-600 16-213 (323)
120 3o36_A Transcription intermedi 99.5 3E-15 1E-19 152.4 6.8 73 903-976 86-160 (184)
121 1g8p_A Magnesium-chelatase 38 99.5 1.7E-14 5.7E-19 162.5 13.6 224 374-641 19-324 (350)
122 3aad_A Transcription initiatio 99.5 4.4E-15 1.5E-19 161.7 8.3 78 899-976 48-125 (292)
123 1sxj_D Activator 1 41 kDa subu 99.5 2.3E-14 8E-19 161.4 14.3 197 374-602 32-241 (353)
124 3uv5_A Transcription initiatio 99.5 5.3E-15 1.8E-19 159.2 8.4 69 908-976 147-215 (265)
125 1r6b_X CLPA protein; AAA+, N-t 99.5 3.3E-14 1.1E-18 176.8 16.2 200 379-606 458-718 (758)
126 1in4_A RUVB, holliday junction 99.5 2.1E-13 7.1E-18 152.8 19.9 213 376-639 22-250 (334)
127 2r44_A Uncharacterized protein 99.5 8.4E-14 2.9E-18 155.7 16.6 209 378-640 26-298 (331)
128 1d2n_A N-ethylmaleimide-sensit 99.5 5.8E-15 2E-19 160.5 7.0 139 703-847 64-210 (272)
129 3aad_A Transcription initiatio 99.5 1.3E-14 4.6E-19 158.0 8.3 68 909-976 181-248 (292)
130 3u5n_A E3 ubiquitin-protein li 99.5 1.2E-14 4.2E-19 150.6 7.4 73 902-975 85-160 (207)
131 2p65_A Hypothetical protein PF 99.5 5.6E-14 1.9E-18 142.5 12.0 156 376-553 19-187 (187)
132 2qby_B CDC6 homolog 3, cell di 99.5 1.4E-13 4.7E-18 157.0 16.2 201 378-603 19-252 (384)
133 1jr3_A DNA polymerase III subu 99.5 1.3E-13 4.4E-18 156.6 15.7 192 374-600 11-225 (373)
134 3syl_A Protein CBBX; photosynt 99.5 2.9E-14 1E-18 157.7 9.7 138 703-848 67-219 (309)
135 2ro1_A Transcription intermedi 99.5 7.2E-15 2.5E-19 149.5 3.9 68 904-975 82-154 (189)
136 2qby_A CDC6 homolog 1, cell di 99.5 3.8E-13 1.3E-17 152.9 18.1 230 374-639 15-272 (386)
137 2r0y_A Chromatin structure-rem 99.5 2.1E-14 7.3E-19 157.1 6.7 66 911-976 176-241 (311)
138 1sxj_E Activator 1 40 kDa subu 99.5 2.2E-13 7.4E-18 153.7 14.6 193 374-600 9-241 (354)
139 1qvr_A CLPB protein; coiled co 99.5 1.7E-13 5.9E-18 172.1 13.9 205 378-607 557-823 (854)
140 2r10_A Chromatin structure-rem 99.5 3.9E-14 1.3E-18 158.8 6.9 66 911-976 226-291 (361)
141 1sxj_C Activator 1 40 kDa subu 99.4 3.4E-13 1.1E-17 151.5 13.8 179 373-586 19-203 (340)
142 1fnn_A CDC6P, cell division co 99.4 3.6E-12 1.2E-16 145.3 22.1 209 375-606 13-257 (389)
143 2bjv_A PSP operon transcriptio 99.4 6.5E-13 2.2E-17 143.6 13.2 198 376-602 3-239 (265)
144 3m6a_A ATP-dependent protease 99.4 5.8E-14 2E-18 167.1 4.8 138 703-847 108-267 (543)
145 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 3.9E-13 1.3E-17 157.2 11.1 198 380-609 23-272 (500)
146 1ofh_A ATP-dependent HSL prote 99.4 6.6E-13 2.2E-17 146.5 8.7 138 703-844 50-213 (310)
147 3hws_A ATP-dependent CLP prote 99.3 7.7E-13 2.6E-17 149.9 7.4 91 703-794 51-156 (363)
148 3cmu_A Protein RECA, recombina 99.3 9.1E-12 3.1E-16 163.2 18.2 111 703-814 1427-1567(2050)
149 1ojl_A Transcriptional regulat 99.3 1E-12 3.6E-17 144.9 7.9 193 380-601 3-233 (304)
150 2r10_A Chromatin structure-rem 99.3 5.6E-13 1.9E-17 149.4 5.1 60 915-976 97-157 (361)
151 3vkg_A Dynein heavy chain, cyt 99.3 4.6E-12 1.6E-16 171.9 14.7 340 412-775 1303-1715(3245)
152 2r0y_A Chromatin structure-rem 99.3 8.2E-13 2.8E-17 144.6 5.6 61 914-976 46-107 (311)
153 1g41_A Heat shock protein HSLU 99.3 6.1E-13 2.1E-17 152.2 4.2 129 703-842 50-188 (444)
154 1jbk_A CLPB protein; beta barr 99.3 2.1E-13 7E-18 138.7 -0.3 132 704-842 44-194 (195)
155 3pfi_A Holliday junction ATP-d 99.3 6.9E-12 2.4E-16 140.5 11.3 127 704-847 56-198 (338)
156 3te6_A Regulatory protein SIR3 99.3 3.1E-12 1.1E-16 140.7 6.3 138 703-848 45-213 (318)
157 1a5t_A Delta prime, HOLB; zinc 99.2 3.5E-11 1.2E-15 134.6 14.1 179 383-598 6-207 (334)
158 3uk6_A RUVB-like 2; hexameric 99.2 4.1E-12 1.4E-16 144.0 5.4 135 704-847 71-273 (368)
159 1hqc_A RUVB; extended AAA-ATPa 99.2 7.5E-11 2.6E-15 131.0 13.9 128 704-847 39-182 (324)
160 3f9v_A Minichromosome maintena 99.2 1.3E-12 4.6E-17 156.7 -1.2 168 380-567 296-492 (595)
161 3cmu_A Protein RECA, recombina 99.2 9E-12 3.1E-16 163.2 6.2 169 634-808 655-867 (2050)
162 1l8q_A Chromosomal replication 99.2 1.4E-11 4.8E-16 137.2 6.3 136 704-847 38-180 (324)
163 3pxg_A Negative regulator of g 99.2 1.4E-11 4.7E-16 144.2 5.6 125 704-847 202-339 (468)
164 1um8_A ATP-dependent CLP prote 99.2 4.5E-11 1.5E-15 136.1 9.7 90 703-794 72-177 (376)
165 3n70_A Transport activator; si 99.1 2.5E-11 8.5E-16 118.7 6.0 115 380-530 2-116 (145)
166 1w5s_A Origin recognition comp 99.1 5.6E-10 1.9E-14 128.2 18.4 215 376-606 19-276 (412)
167 3u61_B DNA polymerase accessor 99.1 1E-10 3.5E-15 130.1 11.8 128 704-850 49-182 (324)
168 4fcw_A Chaperone protein CLPB; 99.1 4.7E-11 1.6E-15 131.9 8.9 139 704-850 48-233 (311)
169 3pvs_A Replication-associated 99.1 4.3E-11 1.5E-15 138.7 8.9 125 704-847 51-179 (447)
170 2v1u_A Cell division control p 99.1 1.1E-10 3.8E-15 132.6 12.0 141 704-848 45-216 (387)
171 3k1j_A LON protease, ATP-depen 99.1 1.1E-10 3.9E-15 140.8 12.5 220 374-637 36-373 (604)
172 2z4s_A Chromosomal replication 99.1 1.3E-11 4.4E-16 143.2 4.0 167 704-889 131-306 (440)
173 3co5_A Putative two-component 99.1 1E-11 3.5E-16 121.1 2.5 112 380-530 5-116 (143)
174 2p65_A Hypothetical protein PF 99.1 6.4E-12 2.2E-16 127.2 1.0 124 704-834 44-187 (187)
175 4akg_A Glutathione S-transfera 99.1 3.9E-10 1.3E-14 152.8 17.2 167 413-601 645-838 (2695)
176 1sxj_A Activator 1 95 kDa subu 99.1 6.6E-11 2.3E-15 140.2 7.6 178 653-847 35-223 (516)
177 3co5_A Putative two-component 99.1 2.8E-11 9.4E-16 118.1 3.3 93 704-814 28-120 (143)
178 2gno_A DNA polymerase III, gam 99.1 1.6E-10 5.3E-15 127.3 9.4 147 383-565 1-152 (305)
179 3n70_A Transport activator; si 99.1 3.8E-11 1.3E-15 117.3 3.2 94 704-814 25-120 (145)
180 2chg_A Replication factor C sm 99.1 7.7E-10 2.6E-14 114.9 13.0 127 704-847 39-175 (226)
181 2qby_A CDC6 homolog 1, cell di 99.0 1.1E-09 3.9E-14 124.1 13.8 142 704-847 46-211 (386)
182 2qby_B CDC6 homolog 3, cell di 99.0 3.5E-10 1.2E-14 128.6 9.6 136 704-847 46-211 (384)
183 1g8p_A Magnesium-chelatase 38 99.0 4.1E-10 1.4E-14 126.4 9.5 137 704-846 46-232 (350)
184 3iu6_A Protein polybromo-1; PB 99.0 5.6E-10 1.9E-14 106.3 8.4 60 913-976 28-87 (147)
185 2r44_A Uncharacterized protein 99.0 9E-10 3.1E-14 122.9 8.9 131 704-847 47-199 (331)
186 2bjv_A PSP operon transcriptio 98.9 4.6E-10 1.6E-14 121.1 5.9 136 704-847 30-191 (265)
187 1ojl_A Transcriptional regulat 98.9 1.7E-10 5.7E-15 127.3 2.1 133 704-846 26-186 (304)
188 3bos_A Putative DNA replicatio 98.9 7.7E-10 2.6E-14 116.8 6.3 128 704-847 53-188 (242)
189 3lqh_A Histone-lysine N-methyl 98.9 1.3E-09 4.4E-14 109.1 5.8 69 897-976 74-142 (183)
190 1sxj_B Activator 1 37 kDa subu 98.9 5.6E-09 1.9E-13 115.5 11.5 126 705-847 44-180 (323)
191 2chq_A Replication factor C sm 98.9 2.5E-09 8.6E-14 118.1 7.7 130 705-847 40-175 (319)
192 1sxj_D Activator 1 41 kDa subu 98.8 1E-08 3.5E-13 115.1 12.2 127 704-847 59-206 (353)
193 1njg_A DNA polymerase III subu 98.8 6.5E-09 2.2E-13 109.2 9.9 133 705-847 47-199 (250)
194 3ec2_A DNA replication protein 98.8 9E-09 3.1E-13 104.1 10.2 101 375-489 6-112 (180)
195 2qen_A Walker-type ATPase; unk 98.8 1.1E-07 3.7E-12 106.2 20.0 192 374-597 7-247 (350)
196 1in4_A RUVB, holliday junction 98.8 1.2E-08 4.3E-13 113.8 11.3 127 704-847 52-194 (334)
197 3vkg_A Dynein heavy chain, cyt 98.8 7.6E-08 2.6E-12 131.4 20.9 165 414-600 605-797 (3245)
198 3nbx_X ATPase RAVA; AAA+ ATPas 98.8 1.3E-09 4.5E-14 127.4 3.3 135 704-844 42-194 (500)
199 1iqp_A RFCS; clamp loader, ext 98.8 9E-09 3.1E-13 114.0 9.9 127 704-847 47-183 (327)
200 1fnn_A CDC6P, cell division co 98.8 8.6E-09 2.9E-13 117.1 9.5 139 705-848 46-208 (389)
201 1sxj_E Activator 1 40 kDa subu 98.7 1.2E-07 4.3E-12 106.3 14.7 128 705-847 38-207 (354)
202 1a5t_A Delta prime, HOLB; zinc 98.7 7.6E-08 2.6E-12 107.5 12.7 128 704-845 25-179 (334)
203 2gno_A DNA polymerase III, gam 98.7 4.7E-08 1.6E-12 107.4 10.4 125 704-846 19-152 (305)
204 1jr3_A DNA polymerase III subu 98.7 5.7E-08 1.9E-12 109.8 10.7 127 705-848 40-193 (373)
205 3f8t_A Predicted ATPase involv 98.6 4.9E-08 1.7E-12 110.9 9.7 214 381-640 215-484 (506)
206 1ny5_A Transcriptional regulat 98.6 6.6E-08 2.2E-12 110.1 10.0 194 379-602 137-369 (387)
207 3f9v_A Minichromosome maintena 98.6 4.8E-09 1.7E-13 125.8 0.3 131 705-847 329-491 (595)
208 2fna_A Conserved hypothetical 98.6 6.7E-07 2.3E-11 99.9 17.5 190 375-597 9-251 (357)
209 1sxj_C Activator 1 40 kDa subu 98.6 1.8E-07 6.1E-12 104.6 12.5 126 705-847 48-183 (340)
210 2krk_A 26S protease regulatory 98.6 3.9E-08 1.3E-12 86.5 5.0 78 548-642 7-84 (86)
211 2kjq_A DNAA-related protein; s 98.6 2.7E-08 9.1E-13 97.5 4.4 105 412-546 35-142 (149)
212 2vhj_A Ntpase P4, P4; non- hyd 98.6 1.7E-08 5.7E-13 110.0 2.8 122 409-536 119-241 (331)
213 3dzd_A Transcriptional regulat 98.6 8.9E-08 3E-12 108.2 8.7 191 380-601 130-359 (368)
214 3kw6_A 26S protease regulatory 98.5 7.8E-08 2.7E-12 83.1 6.1 74 550-640 1-74 (78)
215 2w58_A DNAI, primosome compone 98.5 1.9E-07 6.4E-12 96.0 9.7 103 375-490 21-128 (202)
216 3ec2_A DNA replication protein 98.5 2.9E-08 1E-12 100.2 3.1 100 704-814 39-147 (180)
217 1w5s_A Origin recognition comp 98.5 3.3E-07 1.1E-11 104.9 10.8 141 704-847 51-229 (412)
218 2kjq_A DNAA-related protein; s 98.5 2E-07 6.9E-12 91.2 7.6 92 704-815 37-130 (149)
219 1ny5_A Transcriptional regulat 98.4 1.4E-07 4.6E-12 107.5 4.5 138 705-848 162-323 (387)
220 2vhj_A Ntpase P4, P4; non- hyd 98.4 2.7E-07 9.1E-12 100.6 6.2 106 705-816 125-240 (331)
221 2w58_A DNAI, primosome compone 98.4 5.1E-08 1.8E-12 100.3 0.2 106 704-816 55-165 (202)
222 2qgz_A Helicase loader, putati 98.4 1.9E-07 6.6E-12 102.8 4.8 100 376-489 121-226 (308)
223 3vlf_B 26S protease regulatory 98.4 3.2E-07 1.1E-11 81.1 5.2 75 553-644 2-76 (88)
224 3dzd_A Transcriptional regulat 98.3 3.1E-07 1.1E-11 103.7 5.6 137 705-847 154-313 (368)
225 2qgz_A Helicase loader, putati 98.3 1.2E-07 4.2E-12 104.4 1.3 106 704-816 153-264 (308)
226 1svm_A Large T antigen; AAA+ f 98.2 1E-06 3.5E-11 99.3 6.4 119 408-551 164-284 (377)
227 1tue_A Replication protein E1; 98.2 6.8E-07 2.3E-11 90.9 4.0 29 410-438 55-83 (212)
228 3aji_B S6C, proteasome (prosom 98.2 7.3E-07 2.5E-11 77.9 3.7 75 553-644 2-76 (83)
229 1jr3_D DNA polymerase III, del 98.2 9.6E-06 3.3E-10 90.6 13.8 163 411-600 16-189 (343)
230 2r2a_A Uncharacterized protein 98.2 5.2E-07 1.8E-11 92.6 2.9 130 414-553 6-154 (199)
231 1tue_A Replication protein E1; 98.0 8.4E-06 2.9E-10 82.9 7.1 26 704-729 59-84 (212)
232 2fna_A Conserved hypothetical 97.9 2.8E-05 9.6E-10 86.6 9.3 139 705-847 32-223 (357)
233 2dzn_B 26S protease regulatory 97.8 3.2E-06 1.1E-10 73.6 0.7 69 555-640 1-69 (82)
234 1u0j_A DNA replication protein 97.8 1.3E-05 4.3E-10 85.3 5.4 27 411-437 102-128 (267)
235 2qen_A Walker-type ATPase; unk 97.8 9.2E-05 3.2E-09 82.2 12.8 137 705-847 33-217 (350)
236 3k1j_A LON protease, ATP-depen 97.8 2.2E-05 7.6E-10 94.6 7.1 25 704-728 61-85 (604)
237 1ye8_A Protein THEP1, hypothet 97.8 0.00014 4.6E-09 73.2 11.7 24 415-438 2-25 (178)
238 2r2a_A Uncharacterized protein 97.7 8E-06 2.7E-10 83.7 1.8 125 705-835 7-155 (199)
239 3hr8_A Protein RECA; alpha and 97.7 6.2E-05 2.1E-09 83.9 9.0 83 409-491 57-153 (356)
240 1ye8_A Protein THEP1, hypothet 97.7 7.4E-05 2.5E-09 75.1 8.4 23 705-727 2-24 (178)
241 2w0m_A SSO2452; RECA, SSPF, un 97.6 9.3E-05 3.2E-09 77.1 8.7 41 409-449 19-59 (235)
242 1z6t_A APAF-1, apoptotic prote 97.6 0.00064 2.2E-08 81.5 16.8 173 379-588 124-321 (591)
243 2a5y_B CED-4; apoptosis; HET: 97.6 0.00036 1.2E-08 83.1 13.9 172 382-588 131-330 (549)
244 1xp8_A RECA protein, recombina 97.6 0.00013 4.5E-09 81.8 9.5 83 409-491 70-166 (366)
245 2zr9_A Protein RECA, recombina 97.6 7.3E-05 2.5E-09 83.5 6.9 83 409-491 57-153 (349)
246 3upu_A ATP-dependent DNA helic 97.5 0.00013 4.6E-09 84.7 8.4 55 374-442 19-74 (459)
247 1n0w_A DNA repair protein RAD5 97.5 0.00027 9.1E-09 74.2 9.3 29 409-437 20-48 (243)
248 1u94_A RECA protein, recombina 97.4 0.00027 9.2E-09 79.0 9.2 83 409-491 59-155 (356)
249 2cvh_A DNA repair and recombin 97.3 0.00015 5.2E-09 74.8 4.8 32 705-737 22-53 (220)
250 2krk_A 26S protease regulatory 97.3 7.5E-05 2.6E-09 65.4 1.9 57 830-899 8-65 (86)
251 3sfz_A APAF-1, apoptotic pepti 97.3 0.0027 9.1E-08 82.8 17.3 172 379-588 124-321 (1249)
252 3kw6_A 26S protease regulatory 97.3 7.5E-05 2.5E-09 64.1 1.6 55 831-898 1-56 (78)
253 2ehv_A Hypothetical protein PH 97.2 0.00076 2.6E-08 71.0 9.8 28 409-436 26-53 (251)
254 1n0w_A DNA repair protein RAD5 97.2 0.00022 7.4E-09 74.9 5.4 74 705-778 26-133 (243)
255 3io5_A Recombination and repai 97.2 0.00042 1.5E-08 75.1 7.6 81 409-492 25-126 (333)
256 2dr3_A UPF0273 protein PH0284; 97.2 0.0014 4.9E-08 68.6 11.4 42 409-450 19-60 (247)
257 1g5t_A COB(I)alamin adenosyltr 97.2 0.0018 6.2E-08 65.5 11.4 76 413-488 28-131 (196)
258 2z43_A DNA repair and recombin 97.2 0.00042 1.5E-08 76.6 7.2 82 409-490 103-216 (324)
259 1u0j_A DNA replication protein 97.2 0.0002 7E-09 76.1 4.2 24 704-727 105-128 (267)
260 1v5w_A DMC1, meiotic recombina 97.2 0.0006 2E-08 76.0 8.2 83 409-491 118-233 (343)
261 2cvh_A DNA repair and recombin 97.2 0.00025 8.7E-09 73.1 4.8 38 409-449 16-53 (220)
262 3hr8_A Protein RECA; alpha and 97.1 0.00071 2.4E-08 75.4 8.4 102 705-806 63-194 (356)
263 2orw_A Thymidine kinase; TMTK, 97.1 0.00051 1.7E-08 69.4 6.5 34 414-447 4-37 (184)
264 3dm5_A SRP54, signal recogniti 97.1 0.0018 6.1E-08 74.0 11.1 78 412-489 99-194 (443)
265 3e1s_A Exodeoxyribonuclease V, 97.1 0.00036 1.2E-08 83.1 5.5 103 413-529 204-317 (574)
266 2ehv_A Hypothetical protein PH 97.0 0.00096 3.3E-08 70.2 7.4 20 705-724 32-51 (251)
267 3vlf_B 26S protease regulatory 97.0 9.3E-05 3.2E-09 65.1 -0.5 52 834-898 2-54 (88)
268 3lda_A DNA repair protein RAD5 97.0 0.0012 4.2E-08 74.8 8.4 29 409-437 174-202 (400)
269 2r6a_A DNAB helicase, replicat 97.0 0.0014 5E-08 75.8 9.3 42 409-450 199-241 (454)
270 1svm_A Large T antigen; AAA+ f 96.9 0.00072 2.5E-08 76.0 5.4 98 704-824 170-274 (377)
271 3crm_A TRNA delta(2)-isopenten 96.9 0.00074 2.5E-08 74.0 5.3 42 705-747 7-48 (323)
272 1qhx_A CPT, protein (chloramph 96.9 0.0017 5.8E-08 64.5 7.6 26 413-438 3-28 (178)
273 1xp8_A RECA protein, recombina 96.8 0.0015 5.1E-08 73.2 7.7 74 705-778 76-166 (366)
274 3bh0_A DNAB-like replicative h 96.8 0.0042 1.4E-07 68.2 10.9 42 409-450 64-105 (315)
275 4a74_A DNA repair and recombin 96.8 0.0013 4.3E-08 68.3 6.4 29 409-437 21-49 (231)
276 2zr9_A Protein RECA, recombina 96.8 0.0012 4E-08 73.7 6.4 73 705-777 63-152 (349)
277 2iut_A DNA translocase FTSK; n 96.8 0.0029 9.8E-08 74.3 9.8 138 413-561 214-419 (574)
278 2eyu_A Twitching motility prot 96.8 0.00061 2.1E-08 72.8 3.8 77 410-486 22-107 (261)
279 3jvv_A Twitching mobility prot 96.8 0.0011 3.9E-08 73.9 6.1 74 412-486 122-205 (356)
280 3kl4_A SRP54, signal recogniti 96.8 0.0057 1.9E-07 69.8 11.8 78 412-489 96-191 (433)
281 2b8t_A Thymidine kinase; deoxy 96.8 0.0023 7.8E-08 66.5 7.8 76 413-489 12-101 (223)
282 2q6t_A DNAB replication FORK h 96.8 0.0034 1.2E-07 72.5 10.1 42 409-450 196-238 (444)
283 2z43_A DNA repair and recombin 96.7 0.0015 5.1E-08 72.1 6.5 74 705-778 109-217 (324)
284 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.00098 3.3E-08 69.1 4.6 102 705-810 25-168 (235)
285 3aji_B S6C, proteasome (prosom 96.7 0.00025 8.6E-09 61.6 -0.1 52 834-898 2-54 (83)
286 4a74_A DNA repair and recombin 96.7 0.0016 5.6E-08 67.4 6.1 22 705-726 27-48 (231)
287 1nlf_A Regulatory protein REPA 96.7 0.0078 2.7E-07 64.7 11.6 31 409-439 26-56 (279)
288 2ius_A DNA translocase FTSK; n 96.7 0.0042 1.4E-07 72.3 9.9 74 479-562 299-374 (512)
289 2r8r_A Sensor protein; KDPD, P 96.7 0.0026 8.9E-08 65.8 7.2 39 413-451 6-44 (228)
290 1vma_A Cell division protein F 96.7 0.0078 2.7E-07 65.6 11.5 40 411-450 102-141 (306)
291 2dzn_B 26S protease regulatory 96.7 0.00061 2.1E-08 59.0 2.1 50 836-898 1-51 (82)
292 1cr0_A DNA primase/helicase; R 96.6 0.0075 2.6E-07 65.4 11.0 42 408-449 30-72 (296)
293 3l9o_A ATP-dependent RNA helic 96.6 0.015 5.2E-07 74.4 15.1 29 413-441 199-227 (1108)
294 3trf_A Shikimate kinase, SK; a 96.6 0.001 3.6E-08 66.6 3.4 32 704-736 6-37 (185)
295 2i1q_A DNA repair and recombin 96.5 0.0018 6.2E-08 71.3 5.5 29 409-437 94-122 (322)
296 2iut_A DNA translocase FTSK; n 96.5 0.011 3.6E-07 69.5 12.1 75 766-843 345-420 (574)
297 3jvv_A Twitching mobility prot 96.5 0.0022 7.6E-08 71.5 6.2 95 705-810 125-231 (356)
298 1u94_A RECA protein, recombina 96.5 0.0031 1.1E-07 70.3 7.3 74 705-778 65-155 (356)
299 3lda_A DNA repair protein RAD5 96.5 0.0021 7.1E-08 72.9 5.8 105 705-809 180-327 (400)
300 3f8t_A Predicted ATPase involv 96.5 0.00027 9.1E-09 80.5 -1.6 96 705-810 241-349 (506)
301 1pzn_A RAD51, DNA repair and r 96.5 0.0035 1.2E-07 69.9 7.4 30 408-437 126-155 (349)
302 4gp7_A Metallophosphoesterase; 96.5 0.0028 9.4E-08 63.0 5.9 18 705-722 11-28 (171)
303 2dr3_A UPF0273 protein PH0284; 96.5 0.0062 2.1E-07 63.7 8.9 22 705-726 25-46 (247)
304 1v5w_A DMC1, meiotic recombina 96.5 0.0041 1.4E-07 69.2 7.8 75 705-779 124-234 (343)
305 3vaa_A Shikimate kinase, SK; s 96.5 0.0016 5.3E-08 66.4 4.1 29 410-438 22-50 (199)
306 2b8t_A Thymidine kinase; deoxy 96.5 0.0043 1.5E-07 64.4 7.4 70 706-777 15-102 (223)
307 3umf_A Adenylate kinase; rossm 96.5 0.0078 2.7E-07 62.2 9.3 40 410-456 26-65 (217)
308 2gxq_A Heat resistant RNA depe 96.5 0.011 3.9E-07 59.9 10.5 21 413-433 38-58 (207)
309 1vt4_I APAF-1 related killer D 96.4 0.015 5E-07 72.5 13.0 44 381-436 130-173 (1221)
310 3vaa_A Shikimate kinase, SK; s 96.4 0.0014 4.7E-08 66.9 3.4 32 704-736 26-57 (199)
311 2zts_A Putative uncharacterize 96.4 0.0057 1.9E-07 64.1 8.3 41 409-449 26-67 (251)
312 1gvn_B Zeta; postsegregational 96.4 0.0063 2.2E-07 65.8 8.8 27 411-437 31-57 (287)
313 1pzn_A RAD51, DNA repair and r 96.4 0.0036 1.2E-07 69.8 6.7 23 705-727 133-155 (349)
314 1qhx_A CPT, protein (chloramph 96.4 0.0017 5.8E-08 64.6 3.7 32 704-736 4-35 (178)
315 3iij_A Coilin-interacting nucl 96.4 0.0018 6.1E-08 64.7 3.6 31 704-735 12-42 (180)
316 3trf_A Shikimate kinase, SK; a 96.3 0.0019 6.4E-08 64.7 3.8 26 413-438 5-30 (185)
317 2ewv_A Twitching motility prot 96.3 0.001 3.6E-08 74.8 2.0 82 405-486 128-218 (372)
318 2i3b_A HCR-ntpase, human cance 96.3 0.0028 9.7E-08 64.1 5.1 24 415-438 3-26 (189)
319 1y63_A LMAJ004144AAA protein; 96.3 0.0015 5.2E-08 65.6 3.0 33 704-736 11-43 (184)
320 1qde_A EIF4A, translation init 96.3 0.013 4.3E-07 60.5 10.2 54 375-430 13-68 (224)
321 2orw_A Thymidine kinase; TMTK, 96.3 0.00096 3.3E-08 67.3 1.4 22 705-726 5-26 (184)
322 1cr0_A DNA primase/helicase; R 96.3 0.0052 1.8E-07 66.7 7.4 23 705-727 37-59 (296)
323 4gp7_A Metallophosphoesterase; 96.3 0.0016 5.3E-08 64.8 2.8 22 411-432 7-28 (171)
324 1kht_A Adenylate kinase; phosp 96.3 0.003 1E-07 63.4 4.9 34 414-447 4-37 (192)
325 2iyv_A Shikimate kinase, SK; t 96.3 0.002 6.7E-08 64.6 3.5 32 704-736 3-34 (184)
326 1q57_A DNA primase/helicase; d 96.3 0.011 3.6E-07 69.4 10.3 43 409-451 238-281 (503)
327 2p5t_B PEZT; postsegregational 96.3 0.0073 2.5E-07 64.0 8.0 28 411-438 30-57 (253)
328 3a4m_A L-seryl-tRNA(SEC) kinas 96.3 0.0084 2.9E-07 63.8 8.5 40 413-454 4-43 (260)
329 2rhm_A Putative kinase; P-loop 96.2 0.0026 8.8E-08 64.0 4.2 29 410-438 2-30 (193)
330 4a1f_A DNAB helicase, replicat 96.2 0.024 8.2E-07 62.5 12.2 43 409-451 42-84 (338)
331 3kb2_A SPBC2 prophage-derived 96.2 0.0025 8.5E-08 62.7 3.9 31 705-736 3-33 (173)
332 2xau_A PRE-mRNA-splicing facto 96.2 0.013 4.5E-07 72.2 11.2 60 376-437 72-133 (773)
333 2fz4_A DNA repair protein RAD2 96.2 0.009 3.1E-07 62.7 8.4 23 415-437 110-132 (237)
334 3dm5_A SRP54, signal recogniti 96.2 0.0087 3E-07 68.3 8.8 103 704-808 101-224 (443)
335 1nks_A Adenylate kinase; therm 96.2 0.0033 1.1E-07 63.1 4.8 33 415-447 3-35 (194)
336 2ius_A DNA translocase FTSK; n 96.2 0.022 7.4E-07 66.3 12.1 76 765-843 297-374 (512)
337 1w36_D RECD, exodeoxyribonucle 96.2 0.014 4.7E-07 70.1 10.8 26 414-439 165-190 (608)
338 2px0_A Flagellar biosynthesis 96.2 0.013 4.5E-07 63.6 9.7 40 412-451 104-144 (296)
339 1via_A Shikimate kinase; struc 96.2 0.0021 7.3E-08 63.8 3.0 30 705-735 6-35 (175)
340 2i1q_A DNA repair and recombin 96.1 0.0042 1.5E-07 68.3 5.4 22 705-726 100-121 (322)
341 2cdn_A Adenylate kinase; phosp 96.1 0.0029 9.9E-08 64.4 3.7 31 705-736 22-52 (201)
342 1y63_A LMAJ004144AAA protein; 96.1 0.004 1.4E-07 62.5 4.7 28 411-438 8-36 (184)
343 3iij_A Coilin-interacting nucl 96.1 0.0039 1.3E-07 62.1 4.5 27 412-438 10-36 (180)
344 1jr3_D DNA polymerase III, del 96.0 0.0012 4.1E-08 73.4 0.5 127 704-847 19-156 (343)
345 1kht_A Adenylate kinase; phosp 96.0 0.0064 2.2E-07 60.9 5.9 24 705-728 5-28 (192)
346 3bgw_A DNAB-like replicative h 96.0 0.036 1.2E-06 63.7 12.9 42 409-450 193-234 (444)
347 3e1s_A Exodeoxyribonuclease V, 96.0 0.0073 2.5E-07 71.9 7.3 91 704-809 205-317 (574)
348 2eyu_A Twitching motility prot 96.0 0.0054 1.9E-07 65.4 5.5 70 705-774 27-108 (261)
349 3kl4_A SRP54, signal recogniti 96.0 0.0078 2.7E-07 68.7 6.9 105 704-808 98-223 (433)
350 2ze6_A Isopentenyl transferase 96.0 0.0037 1.3E-07 66.4 4.0 31 706-737 4-34 (253)
351 2rhm_A Putative kinase; P-loop 96.0 0.0032 1.1E-07 63.3 3.2 31 704-735 6-36 (193)
352 1zuh_A Shikimate kinase; alpha 96.0 0.0033 1.1E-07 61.9 3.2 31 705-736 9-39 (168)
353 1via_A Shikimate kinase; struc 95.9 0.0043 1.5E-07 61.6 4.0 24 415-438 6-29 (175)
354 3b6e_A Interferon-induced heli 95.9 0.014 4.9E-07 59.4 8.1 24 414-437 49-72 (216)
355 3upu_A ATP-dependent DNA helic 95.9 0.01 3.5E-07 68.8 7.6 24 705-728 47-70 (459)
356 2yvu_A Probable adenylyl-sulfa 95.9 0.0077 2.6E-07 60.3 5.7 37 411-447 11-47 (186)
357 2pl3_A Probable ATP-dependent 95.9 0.03 1E-06 58.2 10.5 56 374-432 23-81 (236)
358 4g1u_C Hemin import ATP-bindin 95.9 0.0043 1.5E-07 66.4 3.9 28 410-437 34-61 (266)
359 3lw7_A Adenylate kinase relate 95.9 0.0031 1E-07 62.0 2.6 29 705-735 3-31 (179)
360 2p5t_B PEZT; postsegregational 95.9 0.0097 3.3E-07 63.0 6.5 36 704-740 33-68 (253)
361 3bor_A Human initiation factor 95.8 0.023 7.8E-07 59.3 9.3 59 374-434 28-88 (237)
362 3uie_A Adenylyl-sulfate kinase 95.8 0.0081 2.8E-07 61.1 5.6 32 411-442 23-54 (200)
363 3t61_A Gluconokinase; PSI-biol 95.8 0.0052 1.8E-07 62.5 4.2 32 704-736 19-50 (202)
364 2pt7_A CAG-ALFA; ATPase, prote 95.8 0.0084 2.9E-07 66.2 6.1 69 704-775 172-251 (330)
365 3foz_A TRNA delta(2)-isopenten 95.8 0.0067 2.3E-07 65.7 5.0 44 704-748 11-54 (316)
366 1kag_A SKI, shikimate kinase I 95.8 0.0046 1.6E-07 61.0 3.5 29 704-733 5-33 (173)
367 3lw7_A Adenylate kinase relate 95.8 0.012 4E-07 57.7 6.4 23 415-438 3-25 (179)
368 1nn5_A Similar to deoxythymidy 95.8 0.0086 2.9E-07 61.2 5.6 34 412-445 8-41 (215)
369 3kb2_A SPBC2 prophage-derived 95.8 0.0046 1.6E-07 60.8 3.4 24 415-438 3-26 (173)
370 3llm_A ATP-dependent RNA helic 95.8 0.047 1.6E-06 56.9 11.3 23 413-435 76-98 (235)
371 3dl0_A Adenylate kinase; phosp 95.8 0.0041 1.4E-07 64.0 3.1 31 705-736 2-32 (216)
372 1e6c_A Shikimate kinase; phosp 95.8 0.0039 1.3E-07 61.5 2.8 31 705-736 4-34 (173)
373 1aky_A Adenylate kinase; ATP:A 95.7 0.0042 1.4E-07 64.2 3.1 31 704-735 5-35 (220)
374 3a8t_A Adenylate isopentenyltr 95.7 0.0059 2E-07 67.1 4.4 43 705-748 42-84 (339)
375 1kag_A SKI, shikimate kinase I 95.7 0.0049 1.7E-07 60.8 3.4 25 414-438 5-29 (173)
376 2c95_A Adenylate kinase 1; tra 95.7 0.0042 1.4E-07 62.6 2.9 32 704-736 10-41 (196)
377 1t6n_A Probable ATP-dependent 95.7 0.064 2.2E-06 54.9 12.1 61 375-437 13-75 (220)
378 3cm0_A Adenylate kinase; ATP-b 95.7 0.0038 1.3E-07 62.5 2.5 30 705-735 6-35 (186)
379 2wwf_A Thymidilate kinase, put 95.7 0.0094 3.2E-07 60.8 5.6 34 412-445 9-42 (212)
380 1vec_A ATP-dependent RNA helic 95.7 0.027 9.3E-07 57.0 9.0 20 413-432 40-59 (206)
381 3fb4_A Adenylate kinase; psych 95.7 0.0046 1.6E-07 63.6 3.2 31 705-736 2-32 (216)
382 1tev_A UMP-CMP kinase; ploop, 95.7 0.0039 1.3E-07 62.6 2.6 32 704-736 4-35 (196)
383 2iyv_A Shikimate kinase, SK; t 95.7 0.0055 1.9E-07 61.2 3.7 24 415-438 4-27 (184)
384 3io5_A Recombination and repai 95.7 0.0074 2.5E-07 65.5 4.8 73 705-777 30-124 (333)
385 1zd8_A GTP:AMP phosphotransfer 95.7 0.0041 1.4E-07 64.6 2.7 31 704-735 8-38 (227)
386 3exa_A TRNA delta(2)-isopenten 95.7 0.0075 2.6E-07 65.4 4.8 43 705-748 5-47 (322)
387 1zuh_A Shikimate kinase; alpha 95.7 0.0059 2E-07 60.0 3.7 26 413-438 7-32 (168)
388 3umf_A Adenylate kinase; rossm 95.7 0.0052 1.8E-07 63.5 3.3 36 703-741 29-64 (217)
389 1vma_A Cell division protein F 95.7 0.023 7.9E-07 61.9 8.7 71 705-775 106-197 (306)
390 3sr0_A Adenylate kinase; phosp 95.7 0.012 4.3E-07 60.2 6.2 35 415-456 2-36 (206)
391 1hv8_A Putative ATP-dependent 95.7 0.034 1.2E-06 61.5 10.3 62 375-437 5-68 (367)
392 3a4m_A L-seryl-tRNA(SEC) kinas 95.7 0.021 7.3E-07 60.6 8.3 35 705-739 6-42 (260)
393 2fz4_A DNA repair protein RAD2 95.6 0.015 5.3E-07 60.9 7.0 29 705-734 110-138 (237)
394 2pt5_A Shikimate kinase, SK; a 95.6 0.0054 1.8E-07 60.2 3.2 31 705-736 2-32 (168)
395 2c95_A Adenylate kinase 1; tra 95.6 0.0072 2.5E-07 60.8 4.2 27 412-438 8-34 (196)
396 3ber_A Probable ATP-dependent 95.6 0.046 1.6E-06 57.6 10.6 55 375-432 42-99 (249)
397 1w36_D RECD, exodeoxyribonucle 95.6 0.016 5.5E-07 69.5 7.8 24 704-727 165-188 (608)
398 2bwj_A Adenylate kinase 5; pho 95.6 0.0048 1.6E-07 62.3 2.8 32 704-736 13-44 (199)
399 3sr0_A Adenylate kinase; phosp 95.6 0.0057 2E-07 62.7 3.3 28 706-734 3-30 (206)
400 1ak2_A Adenylate kinase isoenz 95.6 0.0052 1.8E-07 64.2 3.1 31 704-735 17-47 (233)
401 3crm_A TRNA delta(2)-isopenten 95.6 0.018 6.3E-07 62.9 7.4 33 414-451 6-38 (323)
402 1nlf_A Regulatory protein REPA 95.6 0.013 4.6E-07 62.9 6.3 23 705-727 32-54 (279)
403 3tlx_A Adenylate kinase 2; str 95.5 0.005 1.7E-07 64.9 2.8 32 704-736 30-61 (243)
404 2ewv_A Twitching motility prot 95.5 0.011 3.6E-07 66.5 5.6 70 705-774 138-219 (372)
405 2plr_A DTMP kinase, probable t 95.5 0.013 4.4E-07 59.7 5.9 29 413-441 4-32 (213)
406 2yhs_A FTSY, cell division pro 95.5 0.021 7.3E-07 65.8 8.1 37 410-446 290-326 (503)
407 1aky_A Adenylate kinase; ATP:A 95.5 0.0094 3.2E-07 61.5 4.8 27 412-438 3-29 (220)
408 1tev_A UMP-CMP kinase; ploop, 95.5 0.0077 2.6E-07 60.4 4.0 26 413-438 3-28 (196)
409 1ly1_A Polynucleotide kinase; 95.5 0.0066 2.2E-07 60.1 3.5 22 414-435 3-24 (181)
410 1qf9_A UMP/CMP kinase, protein 95.5 0.0056 1.9E-07 61.4 2.9 31 704-735 7-37 (194)
411 1zak_A Adenylate kinase; ATP:A 95.5 0.0049 1.7E-07 63.8 2.5 30 704-734 6-35 (222)
412 1ly1_A Polynucleotide kinase; 95.5 0.0038 1.3E-07 61.9 1.7 21 705-725 4-24 (181)
413 1zp6_A Hypothetical protein AT 95.5 0.0066 2.3E-07 60.9 3.4 27 410-436 6-32 (191)
414 1zu4_A FTSY; GTPase, signal re 95.5 0.039 1.3E-06 60.5 9.9 41 410-450 102-142 (320)
415 2vli_A Antibiotic resistance p 95.5 0.0059 2E-07 60.8 3.0 29 704-733 6-34 (183)
416 1zp6_A Hypothetical protein AT 95.5 0.0059 2E-07 61.3 2.9 33 705-738 11-43 (191)
417 1gvn_B Zeta; postsegregational 95.5 0.0085 2.9E-07 64.8 4.3 37 704-741 34-70 (287)
418 1q0u_A Bstdead; DEAD protein, 95.5 0.013 4.3E-07 60.4 5.5 56 376-434 4-62 (219)
419 2cdn_A Adenylate kinase; phosp 95.5 0.0089 3E-07 60.7 4.2 26 413-438 20-45 (201)
420 1e6c_A Shikimate kinase; phosp 95.4 0.0092 3.1E-07 58.7 4.2 25 414-438 3-27 (173)
421 1ls1_A Signal recognition part 95.4 0.068 2.3E-06 57.9 11.5 76 412-487 97-190 (295)
422 1qf9_A UMP/CMP kinase, protein 95.4 0.0098 3.4E-07 59.5 4.5 26 413-438 6-31 (194)
423 2ze6_A Isopentenyl transferase 95.4 0.0079 2.7E-07 63.8 3.8 24 415-438 3-26 (253)
424 3cm0_A Adenylate kinase; ATP-b 95.4 0.0074 2.5E-07 60.3 3.4 26 413-438 4-29 (186)
425 1ukz_A Uridylate kinase; trans 95.4 0.0072 2.4E-07 61.4 3.3 31 705-736 17-47 (203)
426 3be4_A Adenylate kinase; malar 95.4 0.0057 2E-07 63.1 2.6 31 705-736 7-37 (217)
427 2bwj_A Adenylate kinase 5; pho 95.4 0.0092 3.2E-07 60.2 4.1 26 413-438 12-37 (199)
428 3t61_A Gluconokinase; PSI-biol 95.4 0.0092 3.1E-07 60.6 4.1 26 413-438 18-43 (202)
429 1zd8_A GTP:AMP phosphotransfer 95.4 0.007 2.4E-07 62.9 3.2 28 411-438 5-32 (227)
430 1zak_A Adenylate kinase; ATP:A 95.4 0.0083 2.9E-07 62.0 3.7 27 412-438 4-30 (222)
431 2j37_W Signal recognition part 95.3 0.05 1.7E-06 63.3 10.5 40 411-450 99-138 (504)
432 1e4v_A Adenylate kinase; trans 95.3 0.007 2.4E-07 62.2 3.0 30 705-735 2-31 (214)
433 1ak2_A Adenylate kinase isoenz 95.3 0.013 4.5E-07 61.1 5.1 26 413-438 16-41 (233)
434 1tf7_A KAIC; homohexamer, hexa 95.3 0.046 1.6E-06 64.3 10.4 83 409-491 277-385 (525)
435 3tlx_A Adenylate kinase 2; str 95.3 0.01 3.5E-07 62.5 4.3 28 411-438 27-54 (243)
436 1knq_A Gluconate kinase; ALFA/ 95.3 0.0086 2.9E-07 59.2 3.5 29 705-734 10-38 (175)
437 4eun_A Thermoresistant glucoki 95.3 0.01 3.5E-07 60.3 4.1 28 411-438 27-54 (200)
438 3p32_A Probable GTPase RV1496/ 95.3 0.051 1.7E-06 60.5 10.1 39 412-450 78-116 (355)
439 3iuy_A Probable ATP-dependent 95.3 0.064 2.2E-06 55.3 10.2 56 374-432 17-76 (228)
440 2bbw_A Adenylate kinase 4, AK4 95.3 0.01 3.4E-07 62.5 4.0 27 412-438 26-52 (246)
441 1knq_A Gluconate kinase; ALFA/ 95.3 0.011 3.7E-07 58.5 4.0 26 413-438 8-33 (175)
442 1z6t_A APAF-1, apoptotic prote 95.2 0.09 3.1E-06 62.7 12.7 21 705-725 149-169 (591)
443 3be4_A Adenylate kinase; malar 95.2 0.0096 3.3E-07 61.4 3.6 25 414-438 6-30 (217)
444 1w4r_A Thymidine kinase; type 95.2 0.033 1.1E-06 56.1 7.3 68 706-776 23-103 (195)
445 3fe2_A Probable ATP-dependent 95.2 0.073 2.5E-06 55.6 10.4 56 374-432 27-85 (242)
446 2v54_A DTMP kinase, thymidylat 95.2 0.01 3.5E-07 60.2 3.6 33 704-736 5-37 (204)
447 1g5t_A COB(I)alamin adenosyltr 95.2 0.025 8.6E-07 57.1 6.3 109 705-816 30-169 (196)
448 1p9r_A General secretion pathw 95.2 0.026 8.9E-07 64.2 7.2 76 412-487 166-246 (418)
449 2pt7_A CAG-ALFA; ATPase, prote 95.2 0.004 1.4E-07 68.8 0.5 73 412-487 170-250 (330)
450 3rlf_A Maltose/maltodextrin im 95.1 0.011 3.9E-07 66.1 4.1 28 410-437 26-53 (381)
451 1m7g_A Adenylylsulfate kinase; 95.1 0.017 5.8E-07 59.2 5.2 31 411-441 23-54 (211)
452 2xxa_A Signal recognition part 95.1 0.088 3E-06 60.2 11.6 76 411-486 98-192 (433)
453 1vpl_A ABC transporter, ATP-bi 95.1 0.017 5.7E-07 61.4 5.0 28 410-437 38-65 (256)
454 3tui_C Methionine import ATP-b 95.1 0.0082 2.8E-07 66.9 2.7 28 410-437 51-78 (366)
455 2oxc_A Probable ATP-dependent 95.1 0.049 1.7E-06 56.4 8.6 56 374-431 22-79 (230)
456 3gfo_A Cobalt import ATP-bindi 95.1 0.011 3.9E-07 63.3 3.7 28 410-437 31-58 (275)
457 2vli_A Antibiotic resistance p 95.1 0.0074 2.5E-07 60.0 2.2 26 413-438 5-30 (183)
458 2r6a_A DNAB helicase, replicat 95.1 0.021 7.3E-07 65.9 6.3 32 705-736 205-239 (454)
459 1ukz_A Uridylate kinase; trans 95.1 0.013 4.4E-07 59.5 4.0 27 412-438 14-40 (203)
460 2ga8_A Hypothetical 39.9 kDa p 95.1 0.026 8.8E-07 62.4 6.5 48 382-438 2-49 (359)
461 3fmo_B ATP-dependent RNA helic 95.0 0.037 1.3E-06 60.1 7.8 54 375-431 91-149 (300)
462 3thx_B DNA mismatch repair pro 95.0 0.06 2.1E-06 67.1 10.6 27 410-436 670-696 (918)
463 1j8m_F SRP54, signal recogniti 95.0 0.058 2E-06 58.5 9.3 38 413-450 98-135 (297)
464 1nn5_A Similar to deoxythymidy 95.0 0.01 3.4E-07 60.7 3.0 24 704-727 10-33 (215)
465 2ffh_A Protein (FFH); SRP54, s 95.0 0.18 6.2E-06 57.3 13.7 39 412-450 97-135 (425)
466 2pt5_A Shikimate kinase, SK; a 95.0 0.013 4.4E-07 57.4 3.7 24 415-438 2-25 (168)
467 2qor_A Guanylate kinase; phosp 95.0 0.012 4E-07 60.1 3.5 29 410-438 9-37 (204)
468 1m7g_A Adenylylsulfate kinase; 95.0 0.019 6.6E-07 58.8 5.1 33 705-737 27-62 (211)
469 1rz3_A Hypothetical protein rb 95.0 0.05 1.7E-06 55.2 8.1 37 411-447 20-56 (201)
470 2q6t_A DNAB replication FORK h 95.0 0.024 8.2E-07 65.3 6.4 32 705-736 202-236 (444)
471 3eph_A TRNA isopentenyltransfe 95.0 0.015 5.1E-07 65.3 4.5 42 705-747 4-45 (409)
472 1kgd_A CASK, peripheral plasma 95.0 0.015 5.2E-07 58.0 4.1 26 412-437 4-29 (180)
473 3c8u_A Fructokinase; YP_612366 95.0 0.023 7.7E-07 58.1 5.5 41 411-451 20-60 (208)
474 2pbr_A DTMP kinase, thymidylat 95.0 0.013 4.4E-07 58.8 3.6 31 706-736 3-35 (195)
475 3fb4_A Adenylate kinase; psych 95.0 0.013 4.3E-07 60.2 3.6 24 415-438 2-25 (216)
476 1tf7_A KAIC; homohexamer, hexa 95.0 0.062 2.1E-06 63.3 10.0 92 705-796 283-404 (525)
477 2ga8_A Hypothetical 39.9 kDa p 95.0 0.013 4.5E-07 64.7 3.8 30 704-734 25-54 (359)
478 2xb4_A Adenylate kinase; ATP-b 95.0 0.011 3.9E-07 61.2 3.2 29 706-735 3-31 (223)
479 2v3c_C SRP54, signal recogniti 94.9 0.048 1.6E-06 62.4 8.5 39 412-450 98-136 (432)
480 3nh6_A ATP-binding cassette SU 94.9 0.019 6.3E-07 62.6 4.8 29 409-437 76-104 (306)
481 2axn_A 6-phosphofructo-2-kinas 94.9 0.062 2.1E-06 63.0 9.7 33 413-445 35-67 (520)
482 1s2m_A Putative ATP-dependent 94.9 0.049 1.7E-06 61.2 8.5 61 374-436 19-81 (400)
483 3dl0_A Adenylate kinase; phosp 94.8 0.012 4E-07 60.5 2.9 24 415-438 2-25 (216)
484 3b9q_A Chloroplast SRP recepto 94.8 0.041 1.4E-06 59.9 7.4 37 410-446 97-133 (302)
485 2j41_A Guanylate kinase; GMP, 94.8 0.016 5.4E-07 58.8 3.9 27 411-437 4-30 (207)
486 2pbr_A DTMP kinase, thymidylat 94.8 0.018 6.3E-07 57.6 4.4 27 415-441 2-28 (195)
487 3b6e_A Interferon-induced heli 94.8 0.015 5.1E-07 59.3 3.7 23 704-726 49-71 (216)
488 2z0h_A DTMP kinase, thymidylat 94.8 0.023 8E-07 57.0 5.1 29 416-444 3-31 (197)
489 4eun_A Thermoresistant glucoki 94.8 0.016 5.4E-07 58.9 3.7 24 704-727 30-53 (200)
490 2jaq_A Deoxyguanosine kinase; 94.8 0.014 4.9E-07 58.9 3.4 24 415-438 2-25 (205)
491 2pez_A Bifunctional 3'-phospho 94.8 0.028 9.7E-07 55.7 5.5 38 412-451 4-41 (179)
492 2jaq_A Deoxyguanosine kinase; 94.7 0.014 4.8E-07 59.0 3.2 27 706-733 3-29 (205)
493 3eiq_A Eukaryotic initiation f 94.7 0.038 1.3E-06 62.4 7.1 56 376-434 40-98 (414)
494 1cke_A CK, MSSA, protein (cyti 94.7 0.016 5.4E-07 59.9 3.6 29 705-734 7-35 (227)
495 2qm8_A GTPase/ATPase; G protei 94.7 0.092 3.1E-06 58.0 10.0 42 410-451 52-93 (337)
496 1nks_A Adenylate kinase; therm 94.7 0.012 4.2E-07 58.8 2.6 24 705-728 3-26 (194)
497 3thx_A DNA mismatch repair pro 94.7 0.14 4.9E-06 63.9 12.7 24 413-436 662-685 (934)
498 2if2_A Dephospho-COA kinase; a 94.7 0.011 3.9E-07 59.9 2.4 30 705-736 3-32 (204)
499 1fuu_A Yeast initiation factor 94.7 0.057 1.9E-06 60.4 8.4 57 374-432 19-77 (394)
500 1cke_A CK, MSSA, protein (cyti 94.7 0.025 8.7E-07 58.3 5.1 25 414-438 6-30 (227)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.9e-77 Score=728.65 Aligned_cols=526 Identities=32% Similarity=0.496 Sum_probs=423.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
+.++|+||+|+++++++|++++.+|+.+|++|..+|+.+|+|||||||||||||++|++||++++ ++|+.+++++
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg-----~~~~~v~~~~ 273 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG-----AFFFLINGPE 273 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT-----CEEEEEEHHH
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC-----CeEEEEEhHH
Confidence 68999999999999999999999999999999999999999999999999999999999999986 7899999999
Q ss_pred HHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCcccc
Q 002045 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAI 533 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~~l 533 (976)
++++|+|+++..++.+|..|...+||||||||||.|++.+....+....+++++|+.+|+++...++|+||++||+++.|
T Consensus 274 l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 274 IMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp HHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTS
T ss_pred hhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhc
Confidence 99999999999999999999999999999999999999988777777889999999999999888999999999999999
Q ss_pred chhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCcccc
Q 002045 534 DGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYT 613 (976)
Q Consensus 534 d~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~~~~~ 613 (976)
|++|+|+|||++.|+|+.|+.++|.+||+.+++...+..+.+ +..||..|.||+++||.++|++|++.|+++....+..
T Consensus 354 D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd-l~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~ 432 (806)
T 3cf2_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD-LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432 (806)
T ss_dssp CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC-HHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC-HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999999999999999999999999999998877665544 4789999999999999999999999999987654443
Q ss_pred Ccccccc-cccceeEeehhhhhcccccccccccccccccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhc
Q 002045 614 SDDKFLI-DVDSVTVEKYHFIEAMSTITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCML 692 (976)
Q Consensus 614 ~~~~~~~-~~~~~~it~~df~~al~~i~p~~~r~~~~~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~ 692 (976)
....... ......++.+||..|+..+.|+..+......+.+.|.+++++....+++.+. +..++.+++.|.++|+
T Consensus 433 ~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~---v~~p~~~p~~f~~~g~- 508 (806)
T 3cf2_A 433 EDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQEL---VQYPVEHPDKFLKFGM- 508 (806)
T ss_dssp TCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTT---TTTTTTCSGGGSSSCC-
T ss_pred cccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHHH---HHhhhhCHHHHHhcCC-
Confidence 3322111 1235679999999999999999999999999999999999998888777766 3446777877777654
Q ss_pred cCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccc
Q 002045 693 SHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQ 772 (976)
Q Consensus 693 ~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDE 772 (976)
.+++|+|||||||||||++|+|||+++ +.+|+.++.++++++| +|++|++++++|..|+..+||||||||
T Consensus 509 --------~~~~gvLl~GPPGtGKT~lAkaiA~e~-~~~f~~v~~~~l~s~~-vGese~~vr~lF~~Ar~~~P~IifiDE 578 (806)
T 3cf2_A 509 --------TPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISIKGPELLTMW-FGESEANVREIFDKARQAAPCVLFFDE 578 (806)
T ss_dssp --------CCCSCCEEESSTTSSHHHHHHHHHHTT-TCEEEECCHHHHHTTT-CSSCHHHHHHHHHHHHTTCSEEEECSC
T ss_pred --------CCCceEEEecCCCCCchHHHHHHHHHh-CCceEEeccchhhccc-cchHHHHHHHHHHHHHHcCCceeechh
Confidence 236799999999999999999999998 8999999999999997 899999999999999999999999999
Q ss_pred cchhHHH----------HHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHH
Q 002045 773 FNLWWEN----------AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSL 840 (976)
Q Consensus 773 id~l~~~----------~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~ 840 (976)
||+|++. ..++++++|+++|+++....+|+||||||+| +.||+ +.+|++| .+|+|++|+.++|.+
T Consensus 579 iDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p-~~lD~--AllRpgRfd~~i~v~lPd~~~R~~ 655 (806)
T 3cf2_A 579 LDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRP-DIIDP--AILRPGRLDQLIYIPLPDEKSRVA 655 (806)
T ss_dssp GGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCS-SSSCH--HHHSTTTSCCEEEC-----CHHHH
T ss_pred hhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCc-hhCCH--hHcCCCcceEEEEECCcCHHHHHH
Confidence 9999743 2357899999999999988999999999999 89999 8888555 899999999999999
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHH-HHHHHHHHhHhh-hh---------------
Q 002045 841 FLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPKASELKAKV-EAEQHALRRLRM-CL--------------- 903 (976)
Q Consensus 841 i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~sg~s~aelk~~~-ea~~~alreLr~-~L--------------- 903 (976)
||+.++. +.+...++++..|++.+++++| ++|+++| +|.+.++++.-. .+
T Consensus 656 il~~~l~----------~~~~~~~~dl~~la~~t~g~SG---adi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~ 722 (806)
T 3cf2_A 656 ILKANLR----------KSPVAKDVDLEFLAKMTNGFSG---ADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEV 722 (806)
T ss_dssp TTTTTSS----------CC--CCC-------------------CHHHHHHHHHHHHHHHHHC------------------
T ss_pred HHHHHhc----------CCCCCCCCCHHHHHHhCCCCCH---HHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCcccccc
Confidence 9998886 3455678999999999966666 9999999 999999887311 10
Q ss_pred -----hhhhccccccccccccccCCCCCCccchHHHh
Q 002045 904 -----RDVCNRMLYDKRFSAFHYPVTDEDAPNYRSII 935 (976)
Q Consensus 904 -----~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I 935 (976)
...+.+.++..+.....+.|+++++..|..|-
T Consensus 723 ~~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~ 759 (806)
T 3cf2_A 723 EEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFA 759 (806)
T ss_dssp -----CCC----CCTTTC---------------CCCC
T ss_pred ccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 01234445556666667777777777666654
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=5.8e-55 Score=542.02 Aligned_cols=489 Identities=33% Similarity=0.527 Sum_probs=407.3
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
+.++|++|+|++.+++.|++++.+|+.+|++|..+++.++.+|||+||||||||++|++||..++ ..++.+++.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~-----~~~i~v~~~~ 273 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG-----AFFFLINGPE 273 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT-----CEEEEEEHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC-----CcEEEEEchH
Confidence 57899999999999999999999999999999999999999999999999999999999999874 6789999999
Q ss_pred HHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCcccc
Q 002045 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAI 533 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~~l 533 (976)
+.+.+.|+....++.+|..+....|++|||||+|.+++.+.........+++..|+.+|++......++||++||.++.+
T Consensus 274 l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 274 IMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp HSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred hhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 99999999999999999999999999999999999998877666666788999999999998888899999999999999
Q ss_pred chhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCcccc
Q 002045 534 DGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYT 613 (976)
Q Consensus 534 d~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~~~~~ 613 (976)
++++++++||...+.++.|+.++|.+||+.++....+..... +..++..+.||+++++..+|.+|+..++++....+..
T Consensus 354 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~-l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~ 432 (806)
T 1ypw_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD-LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432 (806)
T ss_dssp CTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCC-THHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSC
T ss_pred CHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccch-hHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccch
Confidence 999999999999999999999999999999998876654433 4789999999999999999999999998876543322
Q ss_pred Ccccc-cccccceeEeehhhhhcccccccccccccccccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhc
Q 002045 614 SDDKF-LIDVDSVTVEKYHFIEAMSTITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCML 692 (976)
Q Consensus 614 ~~~~~-~~~~~~~~it~~df~~al~~i~p~~~r~~~~~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~ 692 (976)
..... ........++..+|..++....+...+......+.+.|.++.+++...+.+.+.+. .+..++..+..++
T Consensus 433 ~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl~~vk~~l~~~v~---~~~~~~~~~~~~~-- 507 (806)
T 1ypw_A 433 EDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFG-- 507 (806)
T ss_dssp HHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCCCCHHHHHHTTTT---SSSSSCTTTTCCC--
T ss_pred hhhccchhhhhhhhhhhhhhhccccccCchhhhhhcccCccccccccccchhhhhhHHHHHH---hhhhchHHHHhcC--
Confidence 11110 00113445788899999999999888888888899999999998877777766532 2334443333333
Q ss_pred cCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccc
Q 002045 693 SHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQ 772 (976)
Q Consensus 693 ~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDE 772 (976)
+.++.++||+||||||||++|++||.++ +.+++.+++++++++| +|+++..++.+|+.|+...||||||||
T Consensus 508 -------~~~~~~vLL~GppGtGKT~Lakala~~~-~~~~i~v~~~~l~~~~-~g~~~~~i~~~f~~a~~~~p~vl~iDE 578 (806)
T 1ypw_A 508 -------MTPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISIKGPELLTMW-FGESEANVREIFDKARQAAPCVLFFDE 578 (806)
T ss_dssp -------CCCCCCCCCBCCTTSSHHHHHHHHHHHH-TCCCCCCCCSSSTTCC-TTTSSHHHHHHHHHHHHHCSBCCCCSS
T ss_pred -------CCCCceeEEECCCCCCHHHHHHHHHHHh-CCCEEEEechHhhhhh-cCccHHHHHHHHHHHHhcCCeEEEEEC
Confidence 2335689999999999999999999998 7899999999999887 799999999999999999999999999
Q ss_pred cchhHHH----------HHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcC--CccEEEecCCCHHHHHH
Q 002045 773 FNLWWEN----------AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFP--LRSVYQVEKPSTEDRSL 840 (976)
Q Consensus 773 id~l~~~----------~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~--~r~~i~v~~P~~~er~~ 840 (976)
||.++.. ...++++.|++.|+.+....+|+||+|||++ +.||+ +.+++ +..+|+|++|+.++|.+
T Consensus 579 id~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~-~~ld~--allrpgRf~~~i~~~~p~~~~r~~ 655 (806)
T 1ypw_A 579 LDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRP-DIIDP--AILRPGRLDQLIYIPLPDEKSRVA 655 (806)
T ss_dssp HHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSC-GGGSC--TTSSGGGTTSCCCCCCCCCSHHHH
T ss_pred hhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCc-ccCCH--HHhCccccCceeecCCCCHHHHHH
Confidence 9998632 3455566666666666667899999999999 88999 88874 34788899999999999
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHH-HHHHHHHHh
Q 002045 841 FLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPKASELKAKV-EAEQHALRR 898 (976)
Q Consensus 841 i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~sg~s~aelk~~~-ea~~~alre 898 (976)
||+.++. ......++++..|+..+.+++| ++|.++| ++.+.++++
T Consensus 656 Il~~~l~----------~~~~~~~~~l~~la~~t~g~sg---adi~~l~~~a~~~a~~~ 701 (806)
T 1ypw_A 656 ILKANLR----------KSPVAKDVDLEFLAKMTNGFSG---ADLTEICQRACKLAIRE 701 (806)
T ss_dssp HTTTTTS----------CC----CCCCSCSCGGGSSSCC---HHHHHHHHHHHHHHHSC
T ss_pred HHHHHhc----------cCCCCcccCHHHHHHhccccCH---HHHHHHHHHHHHHHHHH
Confidence 9998876 3444567899999999866655 9999999 888888765
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-44 Score=403.37 Aligned_cols=249 Identities=39% Similarity=0.661 Sum_probs=229.4
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecc
Q 002045 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (976)
Q Consensus 372 ~~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~ 451 (976)
..|.++|+||+|++++|++|+++|.+|+.+|++|..+|+++|+|||||||||||||++|+|+|++++ ++|+.+++
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~-----~~f~~v~~ 215 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD-----CKFIRVSG 215 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT-----CEEEEEEG
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC-----CCceEEEh
Confidence 3488999999999999999999999999999999999999999999999999999999999999996 89999999
Q ss_pred hhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChh---hhhHHHHHHHHHHHhhccCCCCcEEEEecCC
Q 002045 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ---EQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (976)
Q Consensus 452 ~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~---~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn 528 (976)
++++++|+|+++..++.+|..|+..+||||||||||++++.+.... .....+++.+||..|+++....+|+||+|||
T Consensus 216 s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATN 295 (405)
T 4b4t_J 216 AELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATN 295 (405)
T ss_dssp GGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEES
T ss_pred HHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccC
Confidence 9999999999999999999999999999999999999998875432 3345678999999999999999999999999
Q ss_pred CccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 002045 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (976)
Q Consensus 529 ~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~ 608 (976)
+|+.||+||+|||||+..|+|++|+.++|.+||+.++++..+..+.+ +..||..|.||||+||.++|++|++.|+++..
T Consensus 296 rpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd-l~~lA~~t~G~SGADi~~l~~eA~~~Air~~~ 374 (405)
T 4b4t_J 296 RLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN-LRKVAEKMNGCSGADVKGVCTEAGMYALRERR 374 (405)
T ss_dssp CSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC-HHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC-HHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999887765544 48999999999999999999999999998643
Q ss_pred CccccCcccccccccceeEeehhhhhcccccccc
Q 002045 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPA 642 (976)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~it~~df~~al~~i~p~ 642 (976)
..|+.+||..|+..+.+.
T Consensus 375 ----------------~~vt~~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 375 ----------------IHVTQEDFELAVGKVMNK 392 (405)
T ss_dssp ----------------SBCCHHHHHHHHHHHHHH
T ss_pred ----------------CCcCHHHHHHHHHHHhCc
Confidence 248889999999887654
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-43 Score=395.54 Aligned_cols=251 Identities=37% Similarity=0.627 Sum_probs=230.0
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEec
Q 002045 371 QVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (976)
Q Consensus 371 ~~~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~ 450 (976)
...|.++|+||+|++++|++|++.|.+|+.+|++|..+|+++|+|||||||||||||++|+|||++++ ++|+.++
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~-----~~fi~v~ 248 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS-----ATFLRIV 248 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT-----CEEEEEE
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC-----CCEEEEE
Confidence 34589999999999999999999999999999999999999999999999999999999999999996 8999999
Q ss_pred chhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChh---hhhHHHHHHHHHHHhhccCCCCcEEEEecC
Q 002045 451 GADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ---EQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (976)
Q Consensus 451 ~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~---~~~~~~~~~~Ll~~ld~~~~~~~vivI~at 527 (976)
+++++++|+|+++..++.+|..|+..+||||||||||++++.|.... +.....++.+||..|+++....+|+||+||
T Consensus 249 ~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaAT 328 (437)
T 4b4t_I 249 GSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMAT 328 (437)
T ss_dssp SGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEE
T ss_pred HHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeC
Confidence 99999999999999999999999999999999999999999885433 234567889999999999999999999999
Q ss_pred CCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhh
Q 002045 528 NRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREK 607 (976)
Q Consensus 528 n~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~ 607 (976)
|+|+.||+||+|||||+..|+|++|+.++|.+||+.+++...+..+.+ ++.||..|.||||+||.++|++|++.|+++.
T Consensus 329 Nrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd-l~~LA~~T~GfSGADI~~l~~eA~~~Air~~ 407 (437)
T 4b4t_I 329 NKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN-LETLVTTKDDLSGADIQAMCTEAGLLALRER 407 (437)
T ss_dssp SCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC-HHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT
T ss_pred CChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC-HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999887665544 4899999999999999999999999999874
Q ss_pred CCccccCcccccccccceeEeehhhhhccccccccc
Q 002045 608 YPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAA 643 (976)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~it~~df~~al~~i~p~~ 643 (976)
. ..|+.+||..|+..+.+..
T Consensus 408 ~----------------~~It~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 408 R----------------MQVTAEDFKQAKERVMKNK 427 (437)
T ss_dssp C----------------SCBCHHHHHHHHHHHHHHH
T ss_pred C----------------CccCHHHHHHHHHHHhCCC
Confidence 3 2378899999998876643
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-42 Score=395.82 Aligned_cols=253 Identities=35% Similarity=0.605 Sum_probs=231.9
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecc
Q 002045 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (976)
Q Consensus 372 ~~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~ 451 (976)
..|.++|+||+|++++|++|++.|.+|+.+|++|..+|+++|+|||||||||||||++|+|+|++++ ++|+.+++
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~-----~~f~~v~~ 248 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN-----ATFLKLAA 248 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT-----CEEEEEEG
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC-----CCEEEEeh
Confidence 3588999999999999999999999999999999999999999999999999999999999999996 89999999
Q ss_pred hhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhh---hhHHHHHHHHHHHhhccCCCCcEEEEecCC
Q 002045 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQE---QIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (976)
Q Consensus 452 ~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~---~~~~~~~~~Ll~~ld~~~~~~~vivI~atn 528 (976)
++++++|+|+++..++.+|..|+..+||||||||+|.|++.|..... .....++.+||..|+++....+|+||+|||
T Consensus 249 s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTN 328 (434)
T 4b4t_M 249 PQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATN 328 (434)
T ss_dssp GGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECS
T ss_pred hhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999998865443 234567889999999999889999999999
Q ss_pred CccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 002045 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (976)
Q Consensus 529 ~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~ 608 (976)
+|+.||+||+|||||+..|+|++|+.++|.+||+.+++...+..+.+ +..||..|.||||+||.++|++|++.|+++..
T Consensus 329 rp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd-l~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~ 407 (434)
T 4b4t_M 329 RVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN-WQELARSTDEFNGAQLKAVTVEAGMIALRNGQ 407 (434)
T ss_dssp SCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC-HHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC-HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999887665544 48899999999999999999999999998743
Q ss_pred CccccCcccccccccceeEeehhhhhcccccccccccc
Q 002045 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHRG 646 (976)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~it~~df~~al~~i~p~~~r~ 646 (976)
. .|+.+||..|+..+.+...+.
T Consensus 408 ~----------------~i~~~Df~~Al~~v~~~~~~~ 429 (434)
T 4b4t_M 408 S----------------SVKHEDFVEGISEVQARKSKS 429 (434)
T ss_dssp S----------------SBCHHHHHHHHHSCSSSCCCC
T ss_pred C----------------CcCHHHHHHHHHHHhCCCCcC
Confidence 2 378899999999998865433
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-42 Score=392.10 Aligned_cols=248 Identities=38% Similarity=0.665 Sum_probs=227.7
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecc
Q 002045 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (976)
Q Consensus 372 ~~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~ 451 (976)
..|.|+|+||+|++++|++|+++|.+|+.+|++|..+|+++|+|||||||||||||++|+|||++++ ++|+.+++
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~-----~~fi~vs~ 276 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD-----ATFIRVIG 276 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT-----CEEEEEEG
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC-----CCeEEEEh
Confidence 3478999999999999999999999999999999999999999999999999999999999999996 88999999
Q ss_pred hhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChh---hhhHHHHHHHHHHHhhccCCCCcEEEEecCC
Q 002045 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ---EQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (976)
Q Consensus 452 ~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~---~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn 528 (976)
++++++|+|+++..++.+|..|+..+||||||||+|.+++.|.... ......++.+||..|+++....+|+||+|||
T Consensus 277 s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATN 356 (467)
T 4b4t_H 277 SELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATN 356 (467)
T ss_dssp GGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECS
T ss_pred HHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCC
Confidence 9999999999999999999999999999999999999999885433 2345678889999999999999999999999
Q ss_pred CccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 002045 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (976)
Q Consensus 529 ~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~ 608 (976)
+|+.||+||+|||||++.|+|++|+.++|.+||+.+++...+..+.+ ++.||..|.||||+||.++|++|++.|+++..
T Consensus 357 rpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd-l~~LA~~T~GfSGADI~~l~~eAa~~Air~~~ 435 (467)
T 4b4t_H 357 RPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR-WELISRLCPNSTGAELRSVCTEAGMFAIRARR 435 (467)
T ss_dssp CTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC-HHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC-HHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999887765544 48899999999999999999999999998753
Q ss_pred CccccCcccccccccceeEeehhhhhccccccc
Q 002045 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITP 641 (976)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~it~~df~~al~~i~p 641 (976)
. .|+.+||..|+..+..
T Consensus 436 ~----------------~it~~Df~~Al~kV~~ 452 (467)
T 4b4t_H 436 K----------------VATEKDFLKAVDKVIS 452 (467)
T ss_dssp S----------------SBCHHHHHHHHHHHHH
T ss_pred C----------------ccCHHHHHHHHHHHhc
Confidence 2 3788999999887754
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-42 Score=395.25 Aligned_cols=250 Identities=37% Similarity=0.641 Sum_probs=229.6
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecc
Q 002045 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (976)
Q Consensus 372 ~~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~ 451 (976)
..|.++|+||+|++++|++|+++|.+|+.+|++|..+|+++|+|||||||||||||++|+|||++++ ++|+.+++
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~-----~~~~~v~~ 248 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG-----ANFIFSPA 248 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT-----CEEEEEEG
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEeh
Confidence 3589999999999999999999999999999999999999999999999999999999999999996 88999999
Q ss_pred hhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChh---hhhHHHHHHHHHHHhhccCCCCcEEEEecCC
Q 002045 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ---EQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (976)
Q Consensus 452 ~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~---~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn 528 (976)
++++++|+|+++..++.+|..|...+||||||||||++++.|...+ +.....++.+||..|+++...++|+||+|||
T Consensus 249 s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATN 328 (437)
T 4b4t_L 249 SGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATN 328 (437)
T ss_dssp GGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEES
T ss_pred hhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecC
Confidence 9999999999999999999999999999999999999999875432 3345678899999999999999999999999
Q ss_pred CccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 002045 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (976)
Q Consensus 529 ~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~ 608 (976)
+|+.||+||+|||||+..|+|++|+.++|.+||+.+++......+.+ +..||..|.||||+||.++|++|++.|+++..
T Consensus 329 rp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d-l~~lA~~t~G~sGADi~~l~~eA~~~air~~~ 407 (437)
T 4b4t_L 329 RPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD-FEAAVKMSDGFNGADIRNCATEAGFFAIRDDR 407 (437)
T ss_dssp STTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC-HHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC-HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999887665544 48999999999999999999999999998643
Q ss_pred CccccCcccccccccceeEeehhhhhccccccccc
Q 002045 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAA 643 (976)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~it~~df~~al~~i~p~~ 643 (976)
. .|+.+||..|+..+.+..
T Consensus 408 ~----------------~i~~~d~~~Al~~v~~~~ 426 (437)
T 4b4t_L 408 D----------------HINPDDLMKAVRKVAEVK 426 (437)
T ss_dssp S----------------SBCHHHHHHHHHHHHHTC
T ss_pred C----------------CCCHHHHHHHHHHHHhcc
Confidence 2 378899999998877643
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-41 Score=385.44 Aligned_cols=246 Identities=36% Similarity=0.588 Sum_probs=225.8
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecc
Q 002045 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (976)
Q Consensus 372 ~~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~ 451 (976)
..|.++|+||+|++++|+.|++.+.+|+.+|++|..+|+++|+|||||||||||||++|+|+|++++ ++|+.+++
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~-----~~~~~v~~ 239 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK-----AAFIRVNG 239 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT-----CEEEEEEG
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 3478999999999999999999999999999999999999999999999999999999999999996 89999999
Q ss_pred hhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCh---hhhhHHHHHHHHHHHhhccCCCCcEEEEecCC
Q 002045 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (976)
Q Consensus 452 ~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~---~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn 528 (976)
++++++|+|+++..++.+|..|+..+||||||||+|.+++.|... .+....+++.+||..|+++....+|+||+|||
T Consensus 240 ~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN 319 (428)
T 4b4t_K 240 SEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATN 319 (428)
T ss_dssp GGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEES
T ss_pred chhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecC
Confidence 999999999999999999999999999999999999999887433 23446789999999999999999999999999
Q ss_pred CccccchhhcCCCCCccccCCC-CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhh
Q 002045 529 RVDAIDGALRRPGRFDREFNFP-LPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREK 607 (976)
Q Consensus 529 ~~~~ld~aL~r~gRf~~~i~~~-~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~ 607 (976)
+|+.||++|+|||||+..|+|| +|+.++|..||+.++++..+..+.+ ++.||..|.||||+||.++|++|++.|+++.
T Consensus 320 ~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d-l~~lA~~t~G~sgadi~~l~~eA~~~a~r~~ 398 (428)
T 4b4t_K 320 RADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD-LDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN 398 (428)
T ss_dssp CSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC-HHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC-HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999997 8999999999999999887665544 5899999999999999999999999999874
Q ss_pred CCccccCcccccccccceeEeehhhhhccccc
Q 002045 608 YPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (976)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~it~~df~~al~~i 639 (976)
.. .|+.+||..|+...
T Consensus 399 ~~----------------~i~~~d~~~A~~~~ 414 (428)
T 4b4t_K 399 RY----------------VILQSDLEEAYATQ 414 (428)
T ss_dssp CS----------------SBCHHHHHHHHHHH
T ss_pred CC----------------CCCHHHHHHHHHHh
Confidence 32 37889999988654
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.4e-39 Score=396.44 Aligned_cols=285 Identities=33% Similarity=0.588 Sum_probs=205.2
Q ss_pred HhhhcccccCCCCCCCCCCCCcccCCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHH
Q 002045 349 ALTSGIQTAGPSSKGGADIQPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTL 428 (976)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~ 428 (976)
++...+....|+....... ..+.++|++|+|++++|+.|++++.+|+.+|++|.++|+.++++||||||||||||+
T Consensus 451 Df~~Al~~~~ps~~r~~~~----~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~ 526 (806)
T 3cf2_A 451 DFRWALSQSNPSALRETVV----EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTL 526 (806)
T ss_dssp HHHHHHSSSSCCCCCCCCC----BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHH
T ss_pred HHHHHHHhCCCcccccccc----cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchH
Confidence 3444555666665544322 237899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCcEEEEEecchhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCh---hhhhHHHHH
Q 002045 429 IARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIV 505 (976)
Q Consensus 429 laralA~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~---~~~~~~~~~ 505 (976)
+|+++|++++ .+|+.+++++++++|+|+++..++.+|..|+..+||||||||||+|++.|+.. ......+++
T Consensus 527 lAkaiA~e~~-----~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~ 601 (806)
T 3cf2_A 527 LAKAIANECQ-----ANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVI 601 (806)
T ss_dssp HHHHHHHTTT-----CEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHH
T ss_pred HHHHHHHHhC-----CceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHH
Confidence 9999999986 89999999999999999999999999999999999999999999999988643 234567899
Q ss_pred HHHHHHhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcc
Q 002045 506 STLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCV 585 (976)
Q Consensus 506 ~~Ll~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~ 585 (976)
++||..|+++....+|+||+|||+|+.||++|+|||||++.|+|++|+.++|.+||+.++++..+..+.+ +..||..|.
T Consensus 602 ~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~d-l~~la~~t~ 680 (806)
T 3cf2_A 602 NQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD-LEFLAKMTN 680 (806)
T ss_dssp HHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC------------
T ss_pred HHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCC-HHHHHHhCC
Confidence 9999999999998999999999999999999999999999999999999999999999999887765555 488999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhCCccccCccc---------ccccccceeEeehhhhhccccccccc
Q 002045 586 GYCGADLKALCTEAAIRAFREKYPQVYTSDDK---------FLIDVDSVTVEKYHFIEAMSTITPAA 643 (976)
Q Consensus 586 G~s~~dI~~l~~~A~~~a~~~~~~~~~~~~~~---------~~~~~~~~~it~~df~~al~~i~p~~ 643 (976)
||||+||.++|++|++.|+++........... ...+.....|+.+||..|+..++|+.
T Consensus 681 g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSv 747 (806)
T 3cf2_A 681 GFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 747 (806)
T ss_dssp -----CHHHHHHHHHHHHHHHHHC-----------------------CCC----CCTTTC-------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCC
Confidence 99999999999999999999864322111000 01111234689999999999998864
No 10
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-36 Score=335.49 Aligned_cols=229 Identities=17% Similarity=0.183 Sum_probs=196.2
Q ss_pred ccccccccccccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhH
Q 002045 640 TPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHL 719 (976)
Q Consensus 640 ~p~~~r~~~~~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~l 719 (976)
.|..........|.++|.+|+|++..++++.+.+ ..|+.+++.|.++|+.+ |+|+|||||||||||++
T Consensus 131 ~~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v---~~Pl~~pe~f~~~gi~~---------prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 131 DPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVI---ELPVKHPELFESLGIAQ---------PKGVILYGPPGTGKTLL 198 (405)
T ss_dssp SCCTTSCEEECSCSCCGGGSCSCHHHHHHHHHHT---HHHHHCHHHHHHHTCCC---------CCCEEEESCSSSSHHHH
T ss_pred CchhhhccccCCCCCCHHHhCCHHHHHHHHHHHH---HHHHhCHHHHHhCCCCC---------CCceEEeCCCCCCHHHH
Confidence 3445555666789999999999988888777663 33788899999988633 67999999999999999
Q ss_pred HHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH----------HHHHHHHHHH
Q 002045 720 GPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN----------AHEQLRAVLL 789 (976)
Q Consensus 720 A~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~----------~~~~~~~~l~ 789 (976)
|+|||+++ +.+|+.+++++++++| +|+++++++.+|..|+..+||||||||||++++. ...+++..|+
T Consensus 199 AkAiA~e~-~~~f~~v~~s~l~sk~-vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL 276 (405)
T 4b4t_J 199 ARAVAHHT-DCKFIRVSGAELVQKY-IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELL 276 (405)
T ss_dssp HHHHHHHH-TCEEEEEEGGGGSCSS-TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHH
T ss_pred HHHHHHhh-CCCceEEEhHHhhccc-cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHH
Confidence 99999998 8999999999999997 7999999999999999999999999999999842 2245567777
Q ss_pred HHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCC
Q 002045 790 TLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSL 867 (976)
Q Consensus 790 ~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl 867 (976)
+.|+++....+|+||||||+| +.||+ |.+|+|| ..|+|++|+.++|.+||+.++. +.....++++
T Consensus 277 ~~lDg~~~~~~V~vIaATNrp-d~LDp--AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~----------~~~l~~dvdl 343 (405)
T 4b4t_J 277 NQLDGFETSKNIKIIMATNRL-DILDP--ALLRPGRIDRKIEFPPPSVAARAEILRIHSR----------KMNLTRGINL 343 (405)
T ss_dssp HHHHTTTCCCCEEEEEEESCS-SSSCH--HHHSTTSSCCEEECCCCCHHHHHHHHHHHHT----------TSBCCSSCCH
T ss_pred HhhhccCCCCCeEEEeccCCh-hhCCH--hHcCCCcCceEEEcCCcCHHHHHHHHHHHhc----------CCCCCccCCH
Confidence 778888888899999999999 99999 8888666 8999999999999999999887 3455678899
Q ss_pred CCCCCCCCCCCCCchhHHHHHH-HHHHHHHHh
Q 002045 868 PELPKVPTVESGPKASELKAKV-EAEQHALRR 898 (976)
Q Consensus 868 ~~La~~~~~~sg~s~aelk~~~-ea~~~alre 898 (976)
..||..+++++ +++|+++| +|.+.++++
T Consensus 344 ~~lA~~t~G~S---GADi~~l~~eA~~~Air~ 372 (405)
T 4b4t_J 344 RKVAEKMNGCS---GADVKGVCTEAGMYALRE 372 (405)
T ss_dssp HHHHHHCCSCC---HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCC---HHHHHHHHHHHHHHHHHc
Confidence 99999995555 59999999 899998876
No 11
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-35 Score=329.08 Aligned_cols=222 Identities=18% Similarity=0.183 Sum_probs=191.2
Q ss_pred cccccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHh
Q 002045 647 ATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHE 726 (976)
Q Consensus 647 ~~~~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~ 726 (976)
.....+.++|.+|+|++..++++.+.+ ..++.+++.|.++|+. +|+|+|||||||||||++|+|||++
T Consensus 172 ~~~~~p~v~~~DIgGld~~k~~L~e~v---~~Pl~~pe~f~~~Gi~---------~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 172 KMDKSPTESYSDIGGLESQIQEIKESV---ELPLTHPELYEEMGIK---------PPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp EEESSCCCCGGGTCSCHHHHHHHHHHH---HHHHHCCHHHHHHTCC---------CCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred eeccCCCCcceecCcHHHHHHHHHHHH---HHHHhCHHHHHhCCCC---------CCCCCceECCCCchHHHHHHHHHHH
Confidence 344678999999999988888777763 2367788899988853 3689999999999999999999999
Q ss_pred hcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH----------HHHHHHHHHHHHHhhCC
Q 002045 727 LEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN----------AHEQLRAVLLTLLEELP 796 (976)
Q Consensus 727 l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~----------~~~~~~~~l~~ll~~~~ 796 (976)
+ +.+|+.+++++++++| +|+++++++.+|..|+..+||||||||||+++.. ...+.+..|+..|++..
T Consensus 240 ~-~~~fi~v~~s~l~sk~-vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 240 T-SATFLRIVGSELIQKY-LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp H-TCEEEEEESGGGCCSS-SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred h-CCCEEEEEHHHhhhcc-CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence 8 8999999999999997 7999999999999999999999999999999843 22455666777777778
Q ss_pred CCCCEEEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCC
Q 002045 797 SHLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVP 874 (976)
Q Consensus 797 ~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~ 874 (976)
...+|+||||||+| +.||+ |.+|++| ..|+|++|+.++|.+||+.++. +.....++++..||..+
T Consensus 318 ~~~~ViVIaATNrp-d~LDp--ALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~----------~~~l~~dvdl~~LA~~T 384 (437)
T 4b4t_I 318 DRGDVKVIMATNKI-ETLDP--ALIRPGRIDRKILFENPDLSTKKKILGIHTS----------KMNLSEDVNLETLVTTK 384 (437)
T ss_dssp CSSSEEEEEEESCS-TTCCT--TSSCTTTEEEEECCCCCCHHHHHHHHHHHHT----------TSCBCSCCCHHHHHHHC
T ss_pred CCCCEEEEEeCCCh-hhcCH--HHhcCCceeEEEEcCCcCHHHHHHHHHHHhc----------CCCCCCcCCHHHHHHhC
Confidence 88899999999999 99999 9999777 7889999999999999999987 34556778999999999
Q ss_pred CCCCCCchhHHHHHH-HHHHHHHHh
Q 002045 875 TVESGPKASELKAKV-EAEQHALRR 898 (976)
Q Consensus 875 ~~~sg~s~aelk~~~-ea~~~alre 898 (976)
.+++ +++|+++| +|.+.++++
T Consensus 385 ~GfS---GADI~~l~~eA~~~Air~ 406 (437)
T 4b4t_I 385 DDLS---GADIQAMCTEAGLLALRE 406 (437)
T ss_dssp CSCC---HHHHHHHHHHHHHHHHHT
T ss_pred CCCC---HHHHHHHHHHHHHHHHHc
Confidence 6555 59999999 899999876
No 12
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=1.3e-33 Score=330.88 Aligned_cols=285 Identities=42% Similarity=0.670 Sum_probs=241.7
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
+.++|++|+|++.+++.|++++.+|+.++++|..+|+.++.+|||+||||||||++|+++|+.++ .+|+.+++.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~-----~~fv~vn~~~ 273 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG-----AFFFLINGPE 273 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS-----SEEEEEEHHH
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC-----CCEEEEEchH
Confidence 46789999999999999999999999999999999999999999999999999999999999874 7899999999
Q ss_pred HHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCcccc
Q 002045 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAI 533 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~~l 533 (976)
+.+.++|+....++.+|..+....|+||||||||.|++.+..........++..|+..|++.....+++||++||.++.|
T Consensus 274 l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~L 353 (489)
T 3hu3_A 274 IMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (489)
T ss_dssp HHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGB
T ss_pred hhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCcccc
Confidence 99999999999999999999999999999999999999887666667788999999999988888899999999999999
Q ss_pred chhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCcccc
Q 002045 534 DGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYT 613 (976)
Q Consensus 534 d~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~~~~~ 613 (976)
+++++++|||...|+|+.|+.++|.+||+.+++...+..+.. +..++..+.||++++|.+||++|+..++++....+..
T Consensus 354 d~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~-l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~ 432 (489)
T 3hu3_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD-LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432 (489)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCC-HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCT
T ss_pred CHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhh-HHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999999999999999999999999999998877665444 4789999999999999999999999999987665433
Q ss_pred Cccccc-ccccceeEeehhhhhcccccccccccccccccCCCcccchhhhHH
Q 002045 614 SDDKFL-IDVDSVTVEKYHFIEAMSTITPAAHRGATVHSRPLSLVVAPCLQR 664 (976)
Q Consensus 614 ~~~~~~-~~~~~~~it~~df~~al~~i~p~~~r~~~~~~~~~~~~~i~~l~~ 664 (976)
...... .......|+.+||..|+..+.|+..+...+..+.+.|++++|-..
T Consensus 433 ~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~~ 484 (489)
T 3hu3_A 433 EDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRSH 484 (489)
T ss_dssp TCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC---------------
T ss_pred cccccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCcc
Confidence 322111 112345689999999999999999999999999999999998754
No 13
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-34 Score=329.13 Aligned_cols=227 Identities=13% Similarity=0.157 Sum_probs=194.1
Q ss_pred ccccccccccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHH
Q 002045 642 AAHRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGP 721 (976)
Q Consensus 642 ~~~r~~~~~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~ 721 (976)
..........+.++|.+|+|++..++++.+.+ ..|+.+++.|.++|+.+ |+|+|||||||||||++|+
T Consensus 166 ~~~~~~~~~~p~v~~~digGl~~~k~~l~e~v---~~pl~~p~~f~~~g~~~---------prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 166 LVYNMTSFEQGEITFDGIGGLTEQIRELREVI---ELPLKNPEIFQRVGIKP---------PKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp CCSSCEEEESCSSCSGGGCSCHHHHHHHHHHH---HHHHHCHHHHHHHCCCC---------CCEEEEESCTTSSHHHHHH
T ss_pred hhheeeeccCCCCChhHhCChHHHHHHHHHHH---HHHHhCHHHHHhCCCCC---------CCeEEEECCCCCcHHHHHH
Confidence 33344455688999999999988888777663 33677889999988533 6899999999999999999
Q ss_pred HHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH----------HHHHHHHHHHHH
Q 002045 722 AILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN----------AHEQLRAVLLTL 791 (976)
Q Consensus 722 aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~----------~~~~~~~~l~~l 791 (976)
|||+++ +.+|+.+++++++++| +|++++.++.+|..|+..+||||||||||+++.. ....++..|++.
T Consensus 234 AiA~e~-~~~~~~v~~s~l~sk~-~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~ 311 (437)
T 4b4t_L 234 AVAATI-GANFIFSPASGIVDKY-IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQ 311 (437)
T ss_dssp HHHHHH-TCEEEEEEGGGTCCSS-SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHH
T ss_pred HHHHHh-CCCEEEEehhhhcccc-chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHH
Confidence 999998 8999999999999997 7999999999999999999999999999999742 234556677777
Q ss_pred HhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCC
Q 002045 792 LEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPE 869 (976)
Q Consensus 792 l~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~ 869 (976)
|+++.+..+|+||||||+| +.||+ |.+|+|| ..|+|++|+.++|.+||+.++. +.....++++..
T Consensus 312 lDg~~~~~~vivI~ATNrp-~~LDp--AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~----------~~~~~~d~dl~~ 378 (437)
T 4b4t_L 312 MDGFDNLGQTKIIMATNRP-DTLDP--ALLRPGRLDRKVEIPLPNEAGRLEIFKIHTA----------KVKKTGEFDFEA 378 (437)
T ss_dssp HHSSSCTTSSEEEEEESST-TSSCT--TTTSTTSEEEEECCCCCCHHHHHHHHHHHHH----------TSCBCSCCCHHH
T ss_pred hhcccCCCCeEEEEecCCc-hhhCH--HHhCCCccceeeecCCcCHHHHHHHHHHHhc----------CCCCCcccCHHH
Confidence 8888888899999999999 89999 8888877 7899999999999999999998 355567889999
Q ss_pred CCCCCCCCCCCchhHHHHHH-HHHHHHHHh
Q 002045 870 LPKVPTVESGPKASELKAKV-EAEQHALRR 898 (976)
Q Consensus 870 La~~~~~~sg~s~aelk~~~-ea~~~alre 898 (976)
|+..|.+++ +++|+++| +|.+.++++
T Consensus 379 lA~~t~G~s---GADi~~l~~eA~~~air~ 405 (437)
T 4b4t_L 379 AVKMSDGFN---GADIRNCATEAGFFAIRD 405 (437)
T ss_dssp HHHTCCSCC---HHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCCC---HHHHHHHHHHHHHHHHHc
Confidence 999995555 59999999 898988876
No 14
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.1e-33 Score=306.27 Aligned_cols=261 Identities=37% Similarity=0.620 Sum_probs=208.3
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
|.++|+||+|++++|+.|++.+.+|+.+++.+..+++..+.|++|+||||||||+++++||..++ ..++.+++.+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~-----~~~i~i~g~~ 79 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG-----LNFISVKGPE 79 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT-----CEEEEEETTT
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC-----CCEEEEEcHH
Confidence 67999999999999999999999999999999999999999999999999999999999999875 4688999999
Q ss_pred HHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCcccc
Q 002045 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAI 533 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~~l 533 (976)
+...++|+.+..+..+|+.+....|+|+|+||+|.+++.+.........+++.+++..|++......++++++||.|+.|
T Consensus 80 l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 80 LLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII 159 (274)
T ss_dssp TCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS
T ss_pred HHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC
Confidence 98889999999999999999888899999999999887654322222345778899999988888889999999999999
Q ss_pred chhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCC---CCCCHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhhC
Q 002045 534 DGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWK---QPPSRELKSELAAS--CVGYCGADLKALCTEAAIRAFREKY 608 (976)
Q Consensus 534 d~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~---~~~~~~~l~~lA~~--t~G~s~~dI~~l~~~A~~~a~~~~~ 608 (976)
|++++|||||+..|+|+.|+.++|.+||+.+++... ...+. .+..+|.. |.||+|+||.++|++|++.++++..
T Consensus 160 D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~ 238 (274)
T 2x8a_A 160 DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADV-NLEAIAGDLRCDCYTGADLSALVREASICALRQEM 238 (274)
T ss_dssp CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTC-CHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCcccc-CHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999986522 22222 34788886 4599999999999999999998754
Q ss_pred CccccCcccccccccceeEeehhhhhccccccccccc
Q 002045 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHR 645 (976)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~it~~df~~al~~i~p~~~r 645 (976)
...... .......|+.+||..|+..++|+..+
T Consensus 239 ~~~~~~-----~~~~~~~i~~~df~~al~~~~ps~~~ 270 (274)
T 2x8a_A 239 ARQKSG-----NEKGELKVSHKHFEEAFKKVRSSISK 270 (274)
T ss_dssp ----------------CCBCHHHHHHHHTTCCCCC--
T ss_pred hhcccc-----ccccCCeecHHHHHHHHHHhcCCCCh
Confidence 321111 11223469999999999999987543
No 15
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-34 Score=324.75 Aligned_cols=225 Identities=17% Similarity=0.218 Sum_probs=190.7
Q ss_pred ccccccccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHH
Q 002045 644 HRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAI 723 (976)
Q Consensus 644 ~r~~~~~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~ai 723 (976)
........+.++|.+++|++..++++.+. |..|+.+++.|.++|+.+ |+|+|||||||||||++|+||
T Consensus 168 ~~~~~~~~p~~t~~digGl~~~k~~l~e~---v~~pl~~pe~f~~~g~~~---------prGvLLyGPPGTGKTllAkAi 235 (434)
T 4b4t_M 168 KAMEVDEKPTETYSDVGGLDKQIEELVEA---IVLPMKRADKFKDMGIRA---------PKGALMYGPPGTGKTLLARAC 235 (434)
T ss_dssp SCCEEESSCSCCGGGSCSCHHHHHHHHHH---THHHHHCSHHHHHHCCCC---------CCEEEEESCTTSSHHHHHHHH
T ss_pred hhcccCCCCCCChHhcCcHHHHHHHHHHH---HHHHHhCHHHHHhCCCCC---------CCeeEEECcCCCCHHHHHHHH
Confidence 33444568899999999998888887766 333677889999987533 679999999999999999999
Q ss_pred HHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH----------HHHHHHHHHHHHHh
Q 002045 724 LHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN----------AHEQLRAVLLTLLE 793 (976)
Q Consensus 724 a~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~----------~~~~~~~~l~~ll~ 793 (976)
|+++ +.+|+.+++++++++| +|++++.++.+|..|+..+||||||||||+++.. .....+..|++.|+
T Consensus 236 A~e~-~~~f~~v~~s~l~~~~-vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ld 313 (434)
T 4b4t_M 236 AAQT-NATFLKLAAPQLVQMY-IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLD 313 (434)
T ss_dssp HHHH-TCEEEEEEGGGGCSSC-SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHT
T ss_pred HHHh-CCCEEEEehhhhhhcc-cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhh
Confidence 9998 8999999999999997 8999999999999999999999999999999732 12334555666667
Q ss_pred hCCCCCCEEEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCC
Q 002045 794 ELPSHLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELP 871 (976)
Q Consensus 794 ~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La 871 (976)
++.+..+|+||||||+| +.||+ |.+|++| ..|+|++|+.++|.+||+.++.+ .....++++..||
T Consensus 314 g~~~~~~ViVIaaTNrp-~~LD~--AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~----------~~~~~dvdl~~lA 380 (434)
T 4b4t_M 314 GFSSDDRVKVLAATNRV-DVLDP--ALLRSGRLDRKIEFPLPSEDSRAQILQIHSRK----------MTTDDDINWQELA 380 (434)
T ss_dssp TSCSSCSSEEEEECSSC-CCCCT--TTCSTTSEEEEEECCCCCHHHHHHHHHHHHHH----------SCBCSCCCHHHHH
T ss_pred ccCCCCCEEEEEeCCCc-hhcCH--hHhcCCceeEEEEeCCcCHHHHHHHHHHHhcC----------CCCCCcCCHHHHH
Confidence 77777899999999999 89999 8888776 88999999999999999999983 4445678999999
Q ss_pred CCCCCCCCCchhHHHHHH-HHHHHHHHh
Q 002045 872 KVPTVESGPKASELKAKV-EAEQHALRR 898 (976)
Q Consensus 872 ~~~~~~sg~s~aelk~~~-ea~~~alre 898 (976)
..+.+++| ++|+++| +|.+.++++
T Consensus 381 ~~t~G~sG---ADi~~l~~eA~~~a~r~ 405 (434)
T 4b4t_M 381 RSTDEFNG---AQLKAVTVEAGMIALRN 405 (434)
T ss_dssp HHCSSCCH---HHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCH---HHHHHHHHHHHHHHHHc
Confidence 99965554 9999999 888988876
No 16
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.8e-33 Score=310.84 Aligned_cols=229 Identities=37% Similarity=0.644 Sum_probs=210.0
Q ss_pred CCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecch
Q 002045 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (976)
Q Consensus 373 ~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~ 452 (976)
.+.++|++|+|++.+|+.|++++.+|+.++++|... ..++++||||||||||||++|+++|+++. ..+|+.++++
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~ala~~~~----~~~~~~i~~~ 80 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEAN----NSTFFSISSS 80 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTT-CCCCSEEEEESSSSSCHHHHHHHHHHHTT----SCEEEEEECC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCC-CCCCceEEEECCCCccHHHHHHHHHHHcC----CCcEEEEEhH
Confidence 368999999999999999999999999999999853 57789999999999999999999999873 3678999999
Q ss_pred hHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCC-CCcEEEEecCCCcc
Q 002045 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS-RGQVVLIGATNRVD 531 (976)
Q Consensus 453 ~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~-~~~vivI~atn~~~ 531 (976)
++.+.|+|.++..++.+|..+...+|+||||||||.|++.+.........+++.+|+..|+++.. ..+++||++||.++
T Consensus 81 ~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 81 DLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp SSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred HHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 99999999999999999999999999999999999999888766666678899999999998753 57899999999999
Q ss_pred ccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 002045 532 AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (976)
Q Consensus 532 ~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~ 608 (976)
.++++++| ||+..++++.|+.++|.+||+.++......+++..+..||..+.||+|+||.++|++|++.++++..
T Consensus 161 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~ 235 (322)
T 1xwi_A 161 VLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQ 235 (322)
T ss_dssp TSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHH
T ss_pred cCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999888777888889999999999999999999999999998753
No 17
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=1.2e-32 Score=308.19 Aligned_cols=230 Identities=35% Similarity=0.640 Sum_probs=207.9
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecc
Q 002045 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (976)
Q Consensus 372 ~~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~ 451 (976)
..+.++|++|+|++.+++.|++++.+|+.++++|.. +..++.+|||+||||||||++|+++|++++ .+|+.+++
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~-----~~~~~v~~ 84 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEAN-----STFFSVSS 84 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHT-----CEEEEEEH
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHC-----CCEEEEch
Confidence 447899999999999999999999999999999987 457789999999999999999999999985 78999999
Q ss_pred hhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC-CCCcEEEEecCCCc
Q 002045 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-SRGQVVLIGATNRV 530 (976)
Q Consensus 452 ~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~-~~~~vivI~atn~~ 530 (976)
+++.+.|+|+.+..++.+|..+....|+||||||||.|++.+.........+++..|+..|+++. ....++||++||.+
T Consensus 85 ~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~ 164 (322)
T 3eie_A 85 SDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP 164 (322)
T ss_dssp HHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCG
T ss_pred HHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCCh
Confidence 99999999999999999999999999999999999999988766555566788999999999874 56789999999999
Q ss_pred cccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCC
Q 002045 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (976)
Q Consensus 531 ~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~ 609 (976)
+.|+++|++ ||+..++++.|+.++|.+||+.++......++...+..|+..+.||++++|.++|++|+..++++...
T Consensus 165 ~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~ 241 (322)
T 3eie_A 165 WQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQS 241 (322)
T ss_dssp GGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHH
T ss_pred hhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999 99999999999999999999999999888888888899999999999999999999999999998654
No 18
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-33 Score=320.70 Aligned_cols=220 Identities=15% Similarity=0.165 Sum_probs=187.4
Q ss_pred cccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhc
Q 002045 649 VHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELE 728 (976)
Q Consensus 649 ~~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~ 728 (976)
...|.++|.+|+|++..++++.+.+ ..++.+++.|.++|+.+ |+|+|||||||||||++|+|||+++
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V---~~pl~~pe~f~~~Gi~p---------prGILLyGPPGTGKTlLAkAiA~e~- 267 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVV---ELPLLSPERFATLGIDP---------PKGILLYGPPGTGKTLCARAVANRT- 267 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHT---HHHHHCHHHHHHHTCCC---------CSEEEECSCTTSSHHHHHHHHHHHH-
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHH---HHHhcCHHHHHHCCCCC---------CCceEeeCCCCCcHHHHHHHHHhcc-
Confidence 3578899999999988888777663 23677888999988633 6899999999999999999999998
Q ss_pred CCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH----------HHHHHHHHHHHHHhhCCCC
Q 002045 729 KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN----------AHEQLRAVLLTLLEELPSH 798 (976)
Q Consensus 729 ~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~----------~~~~~~~~l~~ll~~~~~~ 798 (976)
+.+|+.+++++++++| +|+++++++.+|..|+..+||||||||+|.++.. .....+..|++.|++....
T Consensus 268 ~~~fi~vs~s~L~sk~-vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 346 (467)
T 4b4t_H 268 DATFIRVIGSELVQKY-VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR 346 (467)
T ss_dssp TCEEEEEEGGGGCCCS-SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT
T ss_pred CCCeEEEEhHHhhccc-CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC
Confidence 8999999999999997 8999999999999999999999999999999732 1234455566666777778
Q ss_pred CCEEEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCC
Q 002045 799 LPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTV 876 (976)
Q Consensus 799 ~~v~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~ 876 (976)
.+|+||||||+| +.||+ |.+|++| ..|+|++|+.++|.+||+.++. +.....++++..|+..+.+
T Consensus 347 ~~ViVIaATNrp-d~LDp--ALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~----------~~~l~~dvdl~~LA~~T~G 413 (467)
T 4b4t_H 347 GNIKVMFATNRP-NTLDP--ALLRPGRIDRKVEFSLPDLEGRANIFRIHSK----------SMSVERGIRWELISRLCPN 413 (467)
T ss_dssp TTEEEEEECSCT-TSBCH--HHHSTTTCCEEECCCCCCHHHHHHHHHHHHT----------TSCBCSSCCHHHHHHHCCS
T ss_pred CcEEEEeCCCCc-ccCCh--hhhccccccEEEEeCCcCHHHHHHHHHHHhc----------CCCCCCCCCHHHHHHHCCC
Confidence 899999999999 89999 7777555 8999999999999999999987 3455667899999999955
Q ss_pred CCCCchhHHHHHH-HHHHHHHHh
Q 002045 877 ESGPKASELKAKV-EAEQHALRR 898 (976)
Q Consensus 877 ~sg~s~aelk~~~-ea~~~alre 898 (976)
+ ++++|+++| +|.+.++++
T Consensus 414 f---SGADI~~l~~eAa~~Air~ 433 (467)
T 4b4t_H 414 S---TGAELRSVCTEAGMFAIRA 433 (467)
T ss_dssp C---CHHHHHHHHHHHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHHHHHHc
Confidence 5 559999999 899988876
No 19
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-33 Score=320.81 Aligned_cols=221 Identities=16% Similarity=0.177 Sum_probs=192.0
Q ss_pred ccccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhh
Q 002045 648 TVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHEL 727 (976)
Q Consensus 648 ~~~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l 727 (976)
....+.++|.+++|+...++++.+.+ ..++.+++.|.++|+. +|+|+|||||||||||++|+|||+++
T Consensus 163 ~~~~p~v~~~digGl~~~k~~l~e~v---~~pl~~p~~~~~~g~~---------~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 163 ENEKPDVTYADVGGLDMQKQEIREAV---ELPLVQADLYEQIGID---------PPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHH---HHHHHCHHHHHHHCCC---------CCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHhccHHHHHHHHHHHH---HHHHhCHHHHHhCCCC---------CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34578899999999988888877763 2367778888888753 36899999999999999999999998
Q ss_pred cCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH----------HHHHHHHHHHHHHhhCCC
Q 002045 728 EKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN----------AHEQLRAVLLTLLEELPS 797 (976)
Q Consensus 728 ~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~----------~~~~~~~~l~~ll~~~~~ 797 (976)
+.+|+.+++++++++| +|+++.+++.+|..|+..+||||||||+|+++.. ...++++.|++.|+++..
T Consensus 231 -~~~~~~v~~~~l~~~~-~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~ 308 (428)
T 4b4t_K 231 -KAAFIRVNGSEFVHKY-LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ 308 (428)
T ss_dssp -TCEEEEEEGGGTCCSS-CSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS
T ss_pred -CCCeEEEecchhhccc-cchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC
Confidence 8999999999999997 7999999999999999999999999999999843 345678888899999988
Q ss_pred CCCEEEEEecCCCcccCcCCCCCCcCCc--cEEEec-CCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCC
Q 002045 798 HLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVE-KPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVP 874 (976)
Q Consensus 798 ~~~v~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~-~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~ 874 (976)
..+|+||||||+| +.||+ |.+|+|| ..|+|+ +|+.++|..||+.++. +.....++++..|+..+
T Consensus 309 ~~~v~vI~aTN~~-~~LD~--AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~----------~~~l~~~~dl~~lA~~t 375 (428)
T 4b4t_K 309 STNVKVIMATNRA-DTLDP--ALLRPGRLDRKIEFPSLRDRRERRLIFGTIAS----------KMSLAPEADLDSLIIRN 375 (428)
T ss_dssp SCSEEEEEEESCS-SSCCH--HHHSSSSEEEEEECCSSCCHHHHHHHHHHHHH----------SSCBCTTCCHHHHHHHT
T ss_pred CCCEEEEEecCCh-hhcCh--hhhcCCcceEEEEcCCCCCHHHHHHHHHHHhc----------CCCCCcccCHHHHHHHC
Confidence 8899999999999 89999 8888777 678885 8999999999999988 34556778999999999
Q ss_pred CCCCCCchhHHHHHH-HHHHHHHHh
Q 002045 875 TVESGPKASELKAKV-EAEQHALRR 898 (976)
Q Consensus 875 ~~~sg~s~aelk~~~-ea~~~alre 898 (976)
.+++ +++|+++| +|.+.++++
T Consensus 376 ~G~s---gadi~~l~~eA~~~a~r~ 397 (428)
T 4b4t_K 376 DSLS---GAVIAAIMQEAGLRAVRK 397 (428)
T ss_dssp TTCC---HHHHHHHHHHHHHHHHHT
T ss_pred CCCC---HHHHHHHHHHHHHHHHHC
Confidence 5554 59999999 899999876
No 20
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.98 E-value=2.3e-32 Score=302.86 Aligned_cols=264 Identities=35% Similarity=0.632 Sum_probs=220.9
Q ss_pred CCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecch
Q 002045 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (976)
Q Consensus 373 ~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~ 452 (976)
.+.++|++|+|++.+++.|++++.+|+.+|+.|..+++.++.++||+||||||||++|+++|+.++ .+|+.+++.
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~-----~~~i~v~~~ 83 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISIKGP 83 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT-----CEEEEECHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC-----CCEEEEEhH
Confidence 378999999999999999999999999999999999999999999999999999999999999885 789999999
Q ss_pred hHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCh---hhhhHHHHHHHHHHHhhccCCCCcEEEEecCCC
Q 002045 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (976)
Q Consensus 453 ~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~---~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~ 529 (976)
++.+.++|..+..++.+|..+....|+||||||+|.|++.++.. ......+++.+|+..|+++....+++||++||.
T Consensus 84 ~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~ 163 (301)
T 3cf0_A 84 ELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNR 163 (301)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESC
T ss_pred HHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCC
Confidence 99999999999999999999999999999999999997654321 112235678889999998877788999999999
Q ss_pred ccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCC
Q 002045 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (976)
Q Consensus 530 ~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~ 609 (976)
++.|+++++|+|||+..|+|+.|+.++|.+||+.+++......+.+ +..++..+.||+|+||.++|+.|+..++++...
T Consensus 164 ~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~-~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~ 242 (301)
T 3cf0_A 164 PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD-LEFLAKMTNGFSGADLTEICQRACKLAIRESIE 242 (301)
T ss_dssp GGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC-HHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998876543333 478999999999999999999999999876532
Q ss_pred ccccCccc-------ccc--cccceeEeehhhhhcccccccc
Q 002045 610 QVYTSDDK-------FLI--DVDSVTVEKYHFIEAMSTITPA 642 (976)
Q Consensus 610 ~~~~~~~~-------~~~--~~~~~~it~~df~~al~~i~p~ 642 (976)
........ ... ......|+.+||..|+..+.|+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s 284 (301)
T 3cf0_A 243 SEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 284 (301)
T ss_dssp HHC--------------------CCCBCHHHHHHHHTTCCCS
T ss_pred hhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCC
Confidence 11000000 000 0112358889999999888764
No 21
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.98 E-value=6.4e-32 Score=305.86 Aligned_cols=226 Identities=36% Similarity=0.660 Sum_probs=199.9
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
+.++|++|+|++.+++.|++++.+|+.++++|.. +..++.+|||+||||||||++|+++|+.++ .+|+.+++.+
T Consensus 46 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~-----~~~~~v~~~~ 119 (355)
T 2qp9_X 46 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEAN-----STFFSVSSSD 119 (355)
T ss_dssp -CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHT-----CEEEEEEHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhC-----CCEEEeeHHH
Confidence 6789999999999999999999999999999987 557889999999999999999999999995 7899999999
Q ss_pred HHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCC-CCcEEEEecCCCccc
Q 002045 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS-RGQVVLIGATNRVDA 532 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~-~~~vivI~atn~~~~ 532 (976)
+...|+|..+..++.+|..+....|+||||||||.|.+.+..........++.+|+..|+++.. ..+++||++||.++.
T Consensus 120 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ 199 (355)
T 2qp9_X 120 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQ 199 (355)
T ss_dssp HHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGG
T ss_pred HhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCccc
Confidence 9999999999999999999999999999999999999877665556677889999999998754 568999999999999
Q ss_pred cchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhh
Q 002045 533 IDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREK 607 (976)
Q Consensus 533 ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~ 607 (976)
|+++++| ||+..+++++|+.++|.+||+.++......++...+..||..+.||++++|.++|++|++.++++.
T Consensus 200 ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~ 272 (355)
T 2qp9_X 200 LDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 272 (355)
T ss_dssp SCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999999988777788888999999999999999999999999999875
No 22
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.97 E-value=7.4e-31 Score=326.86 Aligned_cols=419 Identities=17% Similarity=0.215 Sum_probs=282.9
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC-----CcEEEEEe
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYMR 449 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~~ 449 (976)
.-.|++|+|.+..++.+.+++.. ..+.++||+||||||||++|+++|..+.... ....++.+
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred cCCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 34788999999999998887653 3567899999999999999999999985432 24567777
Q ss_pred cchhHH--hhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecC
Q 002045 450 KGADVL--SKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (976)
Q Consensus 450 ~~~~l~--~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~at 527 (976)
+...++ ..+.|..+..++.+|..+....++||||||+|.|++.+..... ...+. ..+..+...+.+.+|++|
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~--~~~~~----~~L~~~l~~~~~~~I~at 322 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG--QVDAA----NLIKPLLSSGKIRVIGST 322 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSC--HHHHH----HHHSSCSSSCCCEEEEEE
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcc--hHHHH----HHHHHHHhCCCeEEEEEe
Confidence 777666 3578888999999999988877899999999999876544221 12222 333333446788999999
Q ss_pred CCcc-----ccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHccCC-----CHHHHH
Q 002045 528 NRVD-----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK----WKQPPSRELKSELAASCVGY-----CGADLK 593 (976)
Q Consensus 528 n~~~-----~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~----~~~~~~~~~l~~lA~~t~G~-----s~~dI~ 593 (976)
|.++ .++++|.+ ||. .+.|+.|+.+++.+||+.++.. ..+.++++.+..++..+.+| .+..+.
T Consensus 323 ~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i 399 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_dssp CHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHH
T ss_pred CchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHH
Confidence 8754 47889998 997 6999999999999999987765 45667888888888776654 455777
Q ss_pred HHHHHHHHHHHHhhCCccccCcccccccccceeEeehhhhhcccccccccccccccccCCCcccchhhhHHHHHHHhhhh
Q 002045 594 ALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYI 673 (976)
Q Consensus 594 ~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~i~p~~~r~~~~~~~~~~~~~i~~l~~~l~~~~~~l 673 (976)
.++.+|+..+...... .....++.+++..++..+.. ++...+.|.....+....+.+...
T Consensus 400 ~lld~a~~~~~~~~~~------------~~~~~v~~~di~~~~~~~~~-------ip~~~~~~~~~~~l~~l~~~l~~~- 459 (758)
T 1r6b_X 400 DVIDEAGARARLMPVS------------KRKKTVNVADIESVVARIAR-------IPEKSVSQSDRDTLKNLGDRLKML- 459 (758)
T ss_dssp HHHHHHHHHHHHSSSC------------CCCCSCCHHHHHHHHHHHSC-------CCCCCSSSSHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHhccccc------------ccCCccCHHHHHHHHHHhcC-------CCccccchhHHHHHHHHHHHHHhh-
Confidence 8888776543321100 11234777888888776542 122344455554443332222221
Q ss_pred cccCCCCCCchHHHh----hhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCC-----
Q 002045 674 SDIFPPLGMSSELTK----LCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDP----- 744 (976)
Q Consensus 674 ~~i~~~~~~~~~~~~----~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~----- 744 (976)
+ ..+...... +.....|...|-.+..++||+||||||||++|+++|+.+ +.+++.++++++....
T Consensus 460 --v---~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l-~~~~~~i~~s~~~~~~~~~~l 533 (758)
T 1r6b_X 460 --V---FGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL-GIELLRFDMSEYMERHTVSRL 533 (758)
T ss_dssp --S---CSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH-TCEEEEEEGGGCSSSSCCSSS
T ss_pred --c---cCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh-cCCEEEEechhhcchhhHhhh
Confidence 1 122222111 112223444443333469999999999999999999998 7899999988775421
Q ss_pred ------CCCChHHHHHHHHHHHHhcCCceEeccccchhHHHHHHHHHHHHHHHHhhCC---------CCCCEEEEEecCC
Q 002045 745 ------SAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHEQLRAVLLTLLEELP---------SHLPILLLGSSSV 809 (976)
Q Consensus 745 ------~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~---------~~~~v~vi~ttn~ 809 (976)
++|.. ....+...++...++|||||||+++.+ .+.+.|+++|+.-. ...+++||+|||.
T Consensus 534 ~g~~~g~~g~~--~~~~l~~~~~~~~~~vl~lDEi~~~~~----~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~ 607 (758)
T 1r6b_X 534 IGAPPGYVGFD--QGGLLTDAVIKHPHAVLLLDEIEKAHP----DVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNA 607 (758)
T ss_dssp CCCCSCSHHHH--HTTHHHHHHHHCSSEEEEEETGGGSCH----HHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECS
T ss_pred cCCCCCCcCcc--ccchHHHHHHhCCCcEEEEeCccccCH----HHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCc
Confidence 12211 112345555666779999999999765 45666777776421 1357889999998
Q ss_pred Cccc------------------------CcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHHHH
Q 002045 810 PLAE------------------------VEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAA 849 (976)
Q Consensus 810 ~~~~------------------------Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~~~ 849 (976)
+... +.+ ..+.+...+|.|++|+.+++..|++..+...
T Consensus 608 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~ 669 (758)
T 1r6b_X 608 GVRETERKSIGLIHQDNSTDAMEEIKKIFTP--EFRNRLDNIIWFDHLSTDVIHQVVDKFIVEL 669 (758)
T ss_dssp SCC-----------------CHHHHHHHSCH--HHHTTCSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred chhhhhhcccCccccchHHHHHHHHHHhcCH--HHHhhCCcceeeCCCCHHHHHHHHHHHHHHH
Confidence 6322 222 2222333678999999999999999998753
No 23
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.97 E-value=2.7e-30 Score=321.36 Aligned_cols=411 Identities=17% Similarity=0.209 Sum_probs=249.6
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC-----CcEEEEEe
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYMR 449 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~~ 449 (976)
.-.|++|+|.+..++.|..++.. ....++||+||||||||++|+++|+.+.... ....++.+
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred hCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 35688999999999999887754 4456899999999999999999999984321 24556666
Q ss_pred cchhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCC
Q 002045 450 KGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (976)
Q Consensus 450 ~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~ 529 (976)
++ ...|.|+.+..++.+|..+....++||||| . .....+.|+..|+ .+.+.||++||.
T Consensus 243 ~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~----------~~~~~~~L~~~l~----~~~v~~I~at~~ 300 (758)
T 3pxi_A 243 DM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------AIDASNILKPSLA----RGELQCIGATTL 300 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCCTT----SSSCEEEEECCT
T ss_pred cc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----C----------chhHHHHHHHHHh----cCCEEEEeCCCh
Confidence 65 456788888999999999998889999999 1 1223334444444 668999999999
Q ss_pred cc-----ccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHcc-----CCCHHHHHHH
Q 002045 530 VD-----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK----WKQPPSRELKSELAASCV-----GYCGADLKAL 595 (976)
Q Consensus 530 ~~-----~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~----~~~~~~~~~l~~lA~~t~-----G~s~~dI~~l 595 (976)
.. .++++|++ || ..|.|+.|+.+++.+||+.++.. .+..+++..+..++..+. ++.+.....+
T Consensus 301 ~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~l 377 (758)
T 3pxi_A 301 DEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDL 377 (758)
T ss_dssp TTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHH
T ss_pred HHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHH
Confidence 87 69999999 99 56999999999999999987766 456678888877777654 3455666777
Q ss_pred HHHHHHHHHHhhCCcccc---------------------Cccc----------------------c--cccccceeEeeh
Q 002045 596 CTEAAIRAFREKYPQVYT---------------------SDDK----------------------F--LIDVDSVTVEKY 630 (976)
Q Consensus 596 ~~~A~~~a~~~~~~~~~~---------------------~~~~----------------------~--~~~~~~~~it~~ 630 (976)
+..|+..+.......-.. .... + ........++..
T Consensus 378 l~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~ 457 (758)
T 3pxi_A 378 IDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVD 457 (758)
T ss_dssp HHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHHCC---CCTH
T ss_pred HHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccCHH
Confidence 777765443332110000 0000 0 000001122233
Q ss_pred hhhhcccccccccccccccccCCCccc---chhhhHHHHHHHhhhhcccCCCCCCchHHHh----hhhccCCCCCCcccC
Q 002045 631 HFIEAMSTITPAAHRGATVHSRPLSLV---VAPCLQRHLQKAMNYISDIFPPLGMSSELTK----LCMLSHGSAIPLVYR 703 (976)
Q Consensus 631 df~~al~~i~p~~~r~~~~~~~~~~~~---~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~----~~~~~~g~~~p~~~~ 703 (976)
++...+..+.... ...+... .+..++..+. . .+ ..+...... +.....|...|..+.
T Consensus 458 ~i~~~v~~~~~ip-------~~~~~~~~~~~l~~l~~~l~---~---~v---iGq~~a~~~l~~~i~~~~~~~~~~~~p~ 521 (758)
T 3pxi_A 458 DIAMVVSSWTGVP-------VSKIAQTETDKLLNMENILH---S---RV---IGQDEAVVAVAKAVRRARAGLKDPKRPI 521 (758)
T ss_dssp HHHHHHHTTC--------------CHHHHSCC-CHHHHHH---T---TS---CSCHHHHHHHHHHHHHHTTTCSCTTSCS
T ss_pred HHHHHHHHHhCCC-------hHHhhHHHHHHHHHHHHHHh---C---cC---cChHHHHHHHHHHHHHHHcccCCCCCCc
Confidence 3333322221100 0000000 0001111111 0 01 112211111 111122333343323
Q ss_pred CceeeccCCCCcHhhHHHHHHHhh--cCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHEL--EKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAH 781 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l--~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~~ 781 (976)
.++||+||||||||++|+++|+.+ .+.+|+.++++++...+. .. ...++..++...++|||||||+.+.+
T Consensus 522 ~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~-~~----~~~l~~~~~~~~~~vl~lDEi~~~~~--- 593 (758)
T 3pxi_A 522 GSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHS-TS----GGQLTEKVRRKPYSVVLLDAIEKAHP--- 593 (758)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCC-CC-------CHHHHHHCSSSEEEEECGGGSCH---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccc-cc----cchhhHHHHhCCCeEEEEeCccccCH---
Confidence 369999999999999999999986 347899999999887653 22 22344455566779999999999765
Q ss_pred HHHHHHHHHHHhhCC---------CCCCEEEEEecCCCccc-----------CcCCCCCCcCCccEEEecCCCHHHHHHH
Q 002045 782 EQLRAVLLTLLEELP---------SHLPILLLGSSSVPLAE-----------VEGDPSTVFPLRSVYQVEKPSTEDRSLF 841 (976)
Q Consensus 782 ~~~~~~l~~ll~~~~---------~~~~v~vi~ttn~~~~~-----------Ld~~~~~~~~~r~~i~v~~P~~~er~~i 841 (976)
.+.+.|+++|+.-. ...+++||+|||.+... +.+ ..+.+...+|.|++|+.+++..|
T Consensus 594 -~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p--~l~~Rl~~~i~~~~l~~~~~~~i 670 (758)
T 3pxi_A 594 -DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRP--EFINRIDEIIVFHSLEKKHLTEI 670 (758)
T ss_dssp -HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCH--HHHTTSSEEEECC--CHHHHHHH
T ss_pred -HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCH--HHHhhCCeEEecCCCCHHHHHHH
Confidence 44556677776521 24578899999976332 333 22233336889999999999999
Q ss_pred HHHHHHHHH
Q 002045 842 LGRLIEAAV 850 (976)
Q Consensus 842 ~~~~l~~~~ 850 (976)
++.++....
T Consensus 671 ~~~~l~~~~ 679 (758)
T 3pxi_A 671 VSLMSDQLT 679 (758)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987643
No 24
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.97 E-value=5.8e-31 Score=306.61 Aligned_cols=229 Identities=37% Similarity=0.649 Sum_probs=199.2
Q ss_pred CCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecch
Q 002045 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (976)
Q Consensus 373 ~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~ 452 (976)
.+.++|++|+|++.+++.|.+++.+|+.++++|... ..++++|||+||||||||++|+++|+.+. ..+|+.++++
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~-~~~~~~vLL~GppGtGKT~lA~aia~~~~----~~~~~~v~~~ 202 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEAN----NSTFFSISSS 202 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGG-GCCCSEEEEECSTTSSHHHHHHHHHHHCC----SSEEEEECCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhcc-CCCCceEEEECCCCCCHHHHHHHHHHHcC----CCCEEEEeHH
Confidence 367899999999999999999999999999998753 46789999999999999999999999872 2678999999
Q ss_pred hHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCC-CCcEEEEecCCCcc
Q 002045 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS-RGQVVLIGATNRVD 531 (976)
Q Consensus 453 ~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~-~~~vivI~atn~~~ 531 (976)
++++.|+|..+..++.+|..+....|+||||||||.|++.+.........+++.+|+..|+++.. ..+++||++||.++
T Consensus 203 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~ 282 (444)
T 2zan_A 203 DLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 282 (444)
T ss_dssp ---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGG
T ss_pred HHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCcc
Confidence 99999999999999999999999999999999999999887666556677899999999998753 57899999999999
Q ss_pred ccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 002045 532 AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (976)
Q Consensus 532 ~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~ 608 (976)
.|+++|+| ||+..+++++|+.++|..||+.++......+++..+..||..+.||+|+||.++|++|++.++++..
T Consensus 283 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~ 357 (444)
T 2zan_A 283 VLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQ 357 (444)
T ss_dssp GSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHH
T ss_pred ccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999998887777788889999999999999999999999999998753
No 25
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.97 E-value=2.5e-30 Score=300.26 Aligned_cols=246 Identities=39% Similarity=0.617 Sum_probs=214.0
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
+.++|++|+|+++++++|++++.+ +..+..|..+++..++++||+||||||||++|+++|.+++ ++|+.+++++
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~-----~~f~~is~~~ 84 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN-----VPFFHISGSD 84 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT-----CCEEEEEGGG
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC-----CCeeeCCHHH
Confidence 578999999999999999999887 7789999999999999999999999999999999999985 7889999999
Q ss_pred HHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCh---hhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCc
Q 002045 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~---~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~ 530 (976)
+...++|.....++.+|..+....||||||||+|.|.+.++.. ......+++.+|+..|+++....+++||++||.+
T Consensus 85 ~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 85 FVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp TTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 9999999999999999999999999999999999998876532 2233457889999999987777789999999999
Q ss_pred cccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCc
Q 002045 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQ 610 (976)
Q Consensus 531 ~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~~ 610 (976)
+.++++++|+|||+..|.|+.|+.++|.+|++.+++...+..+.+ +..+|..+.||+++||.++|++|+..+.++..
T Consensus 165 ~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~-l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~-- 241 (476)
T 2ce7_A 165 DILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN-LEIIAKRTPGFVGADLENLVNEAALLAAREGR-- 241 (476)
T ss_dssp GGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC-HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC--
T ss_pred hhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh-HHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCC--
Confidence 999999999999999999999999999999999998876543333 57799999999999999999999998886532
Q ss_pred cccCcccccccccceeEeehhhhhcccccccc
Q 002045 611 VYTSDDKFLIDVDSVTVEKYHFIEAMSTITPA 642 (976)
Q Consensus 611 ~~~~~~~~~~~~~~~~it~~df~~al~~i~p~ 642 (976)
..|+.+||..++..+.+.
T Consensus 242 --------------~~I~~~dl~~al~~v~~~ 259 (476)
T 2ce7_A 242 --------------DKITMKDFEEAIDRVIAG 259 (476)
T ss_dssp --------------SSBCHHHHHHHHHHHC--
T ss_pred --------------CeecHHHHHHHHHHHhcC
Confidence 237888999998877643
No 26
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=1.2e-29 Score=278.67 Aligned_cols=248 Identities=42% Similarity=0.701 Sum_probs=218.7
Q ss_pred CCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecch
Q 002045 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (976)
Q Consensus 373 ~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~ 452 (976)
.+.++|++|+|++.+++.|.+++..|+.+++++..+|+.++.++||+||||||||++|+++|+.++ .+++.+++.
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~-----~~~~~v~~~ 85 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN-----ATFIRVVGS 85 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT-----CEEEEEEGG
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEehH
Confidence 468899999999999999999999999999999999999999999999999999999999999985 688899999
Q ss_pred hHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCh---hhhhHHHHHHHHHHHhhccCCCCcEEEEecCCC
Q 002045 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (976)
Q Consensus 453 ~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~---~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~ 529 (976)
++...+.|.....+..+|..+....|+||||||+|.|++.+... ........+..++..++++....+++||+|||.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~ 165 (285)
T 3h4m_A 86 ELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNR 165 (285)
T ss_dssp GGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSC
T ss_pred HHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC
Confidence 99999999999999999999999999999999999998776543 223345667777788877777788999999999
Q ss_pred ccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCC
Q 002045 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (976)
Q Consensus 530 ~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~ 609 (976)
++.+++++++++||+..+.|+.|+.+++.+||+.++.......+.. +..++..+.|+++++|..+|+.|...|+.+...
T Consensus 166 ~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~-~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~ 244 (285)
T 3h4m_A 166 PDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN-LEEIAKMTEGCVGAELKAICTEAGMNAIRELRD 244 (285)
T ss_dssp GGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC-HHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred chhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999998876654433 478999999999999999999999999886432
Q ss_pred ccccCcccccccccceeEeehhhhhcccccccc
Q 002045 610 QVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPA 642 (976)
Q Consensus 610 ~~~~~~~~~~~~~~~~~it~~df~~al~~i~p~ 642 (976)
.|+.+||..++..+...
T Consensus 245 ----------------~I~~~d~~~al~~~~~~ 261 (285)
T 3h4m_A 245 ----------------YVTMDDFRKAVEKIMEK 261 (285)
T ss_dssp ----------------SBCHHHHHHHHHHHHHH
T ss_pred ----------------cCCHHHHHHHHHHHHhc
Confidence 37888998888776543
No 27
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.96 E-value=2e-29 Score=272.98 Aligned_cols=248 Identities=35% Similarity=0.594 Sum_probs=196.4
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
+.++|++|+|++.+++.|++++.+ +.+++.|..+|+..+.++||+||||||||++|+++|+.++ .+++.+++.+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~-----~~~~~~~~~~ 74 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ-----VPFLAMAGAE 74 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT-----CCEEEEETTT
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEechHH
Confidence 358899999999999999999877 7788899999999999999999999999999999999985 6788899999
Q ss_pred HHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChh----hhhHHHHHHHHHHHhhccCCCCcEEEEecCCC
Q 002045 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ----EQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~----~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~ 529 (976)
+...+.|.....+..+|..+....|+||||||+|.|+..+.... .......+..|+..+++.....+++||++||.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~ 154 (262)
T 2qz4_A 75 FVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNR 154 (262)
T ss_dssp TSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESC
T ss_pred HHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCC
Confidence 98888899999999999999988899999999999987654322 12234567788888887777778999999999
Q ss_pred ccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHH-HHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 002045 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSREL-KSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (976)
Q Consensus 530 ~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~-l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~ 608 (976)
++.++++++++|||+..++|+.|+.++|.+||+.++...+....... +..++..+.|+++++|.++|+.|+..+.++..
T Consensus 155 ~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~ 234 (262)
T 2qz4_A 155 ADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGH 234 (262)
T ss_dssp GGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC------
T ss_pred hhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999998887766553 47899999999999999999999988776432
Q ss_pred CccccCcccccccccceeEeehhhhhccccccccc
Q 002045 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAA 643 (976)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~it~~df~~al~~i~p~~ 643 (976)
..|+.+||..++..+.+..
T Consensus 235 ----------------~~i~~~d~~~a~~~~~~~~ 253 (262)
T 2qz4_A 235 ----------------TSVHTLNFEYAVERVLAGT 253 (262)
T ss_dssp ------------------CCBCCHHHHHHHHHHHH
T ss_pred ----------------CCCCHHHHHHHHHHhccCh
Confidence 2477888888887765543
No 28
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.96 E-value=8.2e-29 Score=280.81 Aligned_cols=258 Identities=33% Similarity=0.585 Sum_probs=216.8
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
+.++|++|+|++.+++.|++++.+|+.++++|...+ .++.+|||+||||||||++|+++|+.++ .+|+.+++++
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~-----~~~~~i~~~~ 152 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSG-----ATFFSISASS 152 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTT-----CEEEEEEGGG
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcC-----CeEEEEehHH
Confidence 568999999999999999999999999999887765 6788999999999999999999999874 7899999999
Q ss_pred HHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCC--CCcEEEEecCCCcc
Q 002045 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS--RGQVVLIGATNRVD 531 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~--~~~vivI~atn~~~ 531 (976)
+...+.|.....++.+|..+....|+||||||||.|++.+..........++..|+..|++... ..+++||++||.++
T Consensus 153 l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~ 232 (357)
T 3d8b_A 153 LTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ 232 (357)
T ss_dssp GCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGG
T ss_pred hhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChh
Confidence 9999999999999999999999999999999999999877655555567888899999987642 46799999999999
Q ss_pred ccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCcc
Q 002045 532 AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQV 611 (976)
Q Consensus 532 ~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~~~ 611 (976)
.+++++++ ||...++++.|+.++|.+|++.++......++...+..|+..+.||++++|..+|+.|+..++++.....
T Consensus 233 ~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~ 310 (357)
T 3d8b_A 233 EIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTAD 310 (357)
T ss_dssp GBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC--
T ss_pred hCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999 9999999999999999999999998888788888899999999999999999999999999988643211
Q ss_pred ccCcccccccccceeEeehhhhhccccccccc
Q 002045 612 YTSDDKFLIDVDSVTVEKYHFIEAMSTITPAA 643 (976)
Q Consensus 612 ~~~~~~~~~~~~~~~it~~df~~al~~i~p~~ 643 (976)
.. .........|+..||..++..+.|+.
T Consensus 311 ~~----~~~~~~~~~i~~~d~~~al~~~~ps~ 338 (357)
T 3d8b_A 311 IA----TITPDQVRPIAYIDFENAFRTVRPSV 338 (357)
T ss_dssp ------------CCCBCHHHHHHHHHHHGGGC
T ss_pred hc----cccccccCCcCHHHHHHHHHhcCCCC
Confidence 11 11112234588899999998888753
No 29
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.96 E-value=7.9e-29 Score=273.80 Aligned_cols=258 Identities=34% Similarity=0.546 Sum_probs=216.1
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
+.++|++|+|++.+++.|.+++..|+.++++|..++ .++.++||+||||||||++|+++|+.++ .+|+.+++++
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~-----~~~~~i~~~~ 89 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECS-----ATFLNISAAS 89 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTT-----CEEEEEESTT
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhC-----CCeEEeeHHH
Confidence 678999999999999999999999999999988765 5678999999999999999999999885 6888999999
Q ss_pred HHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCC---CcEEEEecCCCc
Q 002045 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSR---GQVVLIGATNRV 530 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~---~~vivI~atn~~ 530 (976)
+...+.|.....++.+|..+....|+||||||+|.+++.+..........++..|+..+++.... ..++||++||.+
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~ 169 (297)
T 3b9p_A 90 LTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRP 169 (297)
T ss_dssp TSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCG
T ss_pred HhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCCh
Confidence 99999999999999999999999999999999999998765544444567778888888876543 579999999999
Q ss_pred cccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCc
Q 002045 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQ 610 (976)
Q Consensus 531 ~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~~ 610 (976)
+.+++++++ ||...++++.|+.+++..|++.++...+..++...+..++..+.||++++|.++|+.|+..++++....
T Consensus 170 ~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~ 247 (297)
T 3b9p_A 170 QELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVE 247 (297)
T ss_dssp GGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--
T ss_pred hhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999 999999999999999999999999988777888888999999999999999999999999999875422
Q ss_pred cccCcccccccccceeEeehhhhhccccccccc
Q 002045 611 VYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAA 643 (976)
Q Consensus 611 ~~~~~~~~~~~~~~~~it~~df~~al~~i~p~~ 643 (976)
.... ........|+.+||..|+..+.|+.
T Consensus 248 ~~~~----~~~~~~~~i~~~d~~~a~~~~~~s~ 276 (297)
T 3b9p_A 248 QVKC----LDISAMRAITEQDFHSSLKRIRRSV 276 (297)
T ss_dssp ----------CCCCCCCCHHHHHHHTTSCCCSS
T ss_pred hccc----ccccccCCcCHHHHHHHHHHcCCCC
Confidence 1111 1111234588999999998887653
No 30
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.96 E-value=1e-28 Score=267.09 Aligned_cols=244 Identities=36% Similarity=0.599 Sum_probs=206.0
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
+..+|++|+|++.+++.|.+++.+ +.++..+..++...+.++||+||||||||++|+++|+.++ .+++.+++.+
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~-----~~~~~i~~~~ 80 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK-----VPFFTISGSD 80 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT-----CCEEEECSCS
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC-----CCEEEEeHHH
Confidence 578999999999999999998876 7788888888989999999999999999999999999885 5688899999
Q ss_pred HHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCh---hhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCc
Q 002045 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~---~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~ 530 (976)
+...+.|.....++.+|..+....|+||||||+|.|.+.+... .......++..++..++++....+++||++||.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~ 160 (257)
T 1lv7_A 81 FVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRP 160 (257)
T ss_dssp STTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCT
T ss_pred HHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCc
Confidence 8888888888889999999998889999999999998765432 1223456788899999988777889999999999
Q ss_pred cccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCc
Q 002045 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQ 610 (976)
Q Consensus 531 ~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~~ 610 (976)
+.+++++.+++||+..+.++.|+.++|.+|++.+++...+..+.. +..++..+.||++++|.++|+.|+..|..+..
T Consensus 161 ~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~-~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~-- 237 (257)
T 1lv7_A 161 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID-AAIIARGTPGFSGADLANLVNEAALFAARGNK-- 237 (257)
T ss_dssp TTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC-HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC--
T ss_pred hhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcccc-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC--
Confidence 999999999999999999999999999999999998776543333 46789999999999999999999999887542
Q ss_pred cccCcccccccccceeEeehhhhhcccccc
Q 002045 611 VYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (976)
Q Consensus 611 ~~~~~~~~~~~~~~~~it~~df~~al~~i~ 640 (976)
..|+.+||..++..+.
T Consensus 238 --------------~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 238 --------------RVVSMVEFEKAKDKIM 253 (257)
T ss_dssp --------------SSBCHHHHHHHHHHHT
T ss_pred --------------CcccHHHHHHHHHHHh
Confidence 2378888888876553
No 31
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.96 E-value=1.6e-28 Score=308.55 Aligned_cols=207 Identities=26% Similarity=0.281 Sum_probs=140.6
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC-----CcEEEEEe
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYMR 449 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~~ 449 (976)
..+|++++|.+..+..+..++.. ....++||+||||||||++|+++|+.+.... ....++.+
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred cCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 45788999999999888887643 3456899999999999999999999985421 24678888
Q ss_pred cchhHH--hhhHhHHHHHHHHHHHHHHhc-CCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEec
Q 002045 450 KGADVL--SKWVGEAERQLKLLFEEAQRN-QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGA 526 (976)
Q Consensus 450 ~~~~l~--~~~~g~~~~~l~~~f~~a~~~-~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~a 526 (976)
++..++ ..+.|+.+..+..+|..+... .++||||||+|.|.+.+...+ ...+.+.|...++ .+.+.+|++
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g---~~~~~~~L~~~l~----~~~i~~I~a 305 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG---AVDAGNMLKPALA----RGELRLIGA 305 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHH----TTCCCEEEE
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc---hHHHHHHHHHHHh----CCCeEEEEe
Confidence 888876 467888899999999998875 689999999999986644322 2233444555554 356788999
Q ss_pred CCCcc----ccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHccC-----CCHHHHH
Q 002045 527 TNRVD----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW----KQPPSRELKSELAASCVG-----YCGADLK 593 (976)
Q Consensus 527 tn~~~----~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~----~~~~~~~~l~~lA~~t~G-----~s~~dI~ 593 (976)
||.++ .++++|.+ ||.. |.|+.|+.+++.+||+.++..+ ...++++.+..++..+.| |.+....
T Consensus 306 t~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai 382 (854)
T 1qvr_A 306 TTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAI 382 (854)
T ss_dssp ECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHH
T ss_pred cCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHH
Confidence 88765 37999999 9975 9999999999999998776643 566778888877776644 4566666
Q ss_pred HHHHHHHHHHH
Q 002045 594 ALCTEAAIRAF 604 (976)
Q Consensus 594 ~l~~~A~~~a~ 604 (976)
.++.+|+..+.
T Consensus 383 ~lldea~a~~~ 393 (854)
T 1qvr_A 383 DLIDEAAARLR 393 (854)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666654433
No 32
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.96 E-value=2.1e-28 Score=285.72 Aligned_cols=247 Identities=38% Similarity=0.582 Sum_probs=214.0
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
+.++|++|+|+++++.+|++++.+ +..+..|..+++..++++||+||||||||+||++||..+. .+|+.+++.+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~ 99 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSD 99 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGG
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhH
Confidence 678999999999999999999877 6788899999999999999999999999999999999874 6789999999
Q ss_pred HHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCh---hhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCc
Q 002045 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~---~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~ 530 (976)
+...++|.....++.+|+.+....|||+||||||.+...+... ........+.+|+..|++......++||++||.|
T Consensus 100 ~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p 179 (499)
T 2dhr_A 100 FVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRP 179 (499)
T ss_dssp GTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCG
T ss_pred HHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCCh
Confidence 9988999998899999999887789999999999998766431 1233457788999999988877789999999999
Q ss_pred cccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCc
Q 002045 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQ 610 (976)
Q Consensus 531 ~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~~ 610 (976)
+.||++++|+|||+..|.|+.|+.++|.+||+.+++...+..+.. +..+|..+.||+|+||.++|++|+..+.++..
T Consensus 180 ~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~-l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~-- 256 (499)
T 2dhr_A 180 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD-LALLAKRTPGFVGADLENLLNEAALLAAREGR-- 256 (499)
T ss_dssp GGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSST-THHHHTTSCSCCHHHHHHHHHHHHHHHTTTCC--
T ss_pred hhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC--
Confidence 999999999999999999999999999999999987765543333 47899999999999999999999988775421
Q ss_pred cccCcccccccccceeEeehhhhhccccccccc
Q 002045 611 VYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAA 643 (976)
Q Consensus 611 ~~~~~~~~~~~~~~~~it~~df~~al~~i~p~~ 643 (976)
..|+.+||..++..+.+..
T Consensus 257 --------------~~It~~dl~~al~~v~~~~ 275 (499)
T 2dhr_A 257 --------------RKITMKDLEEAADRVMMLP 275 (499)
T ss_dssp --------------SSCCSHHHHHHHHHHTTCS
T ss_pred --------------CccCHHHHHHHHHHHhccc
Confidence 2378899999998876543
No 33
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.96 E-value=3.3e-28 Score=279.28 Aligned_cols=258 Identities=34% Similarity=0.570 Sum_probs=210.2
Q ss_pred CCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecch
Q 002045 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (976)
Q Consensus 373 ~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~ 452 (976)
.+.++|++|+|++.+++.|.+++.+|+.++++|..++ .++.+|||+||||||||++|+++|+.++ .+|+.+++.
T Consensus 109 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~-----~~~~~v~~~ 182 (389)
T 3vfd_A 109 GTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESN-----ATFFNISAA 182 (389)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTT-----CEEEEECSC
T ss_pred CCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhc-----CcEEEeeHH
Confidence 3678999999999999999999999999999988776 5678999999999999999999999875 789999999
Q ss_pred hHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCC--CCcEEEEecCCCc
Q 002045 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS--RGQVVLIGATNRV 530 (976)
Q Consensus 453 ~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~--~~~vivI~atn~~ 530 (976)
.+...++|.....+..+|..+....|+||||||||.|+..+..........++..|+..|++... ...++||++||.+
T Consensus 183 ~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~ 262 (389)
T 3vfd_A 183 SLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRP 262 (389)
T ss_dssp CC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCG
T ss_pred HhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCc
Confidence 99999999999999999999999999999999999998877655555677888899999987654 4679999999999
Q ss_pred cccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCc
Q 002045 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQ 610 (976)
Q Consensus 531 ~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~~ 610 (976)
+.|++++++ ||...|+|+.|+.++|..||+.++...+..++...+..|+..+.||++++|..||+.|+..++++....
T Consensus 263 ~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~ 340 (389)
T 3vfd_A 263 QELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPE 340 (389)
T ss_dssp GGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC
T ss_pred hhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999 999899999999999999999999988888888899999999999999999999999999999875432
Q ss_pred cccCcccccccccceeEeehhhhhcccccccc
Q 002045 611 VYTSDDKFLIDVDSVTVEKYHFIEAMSTITPA 642 (976)
Q Consensus 611 ~~~~~~~~~~~~~~~~it~~df~~al~~i~p~ 642 (976)
.... ........|+.+||..++..+.+.
T Consensus 341 ~~~~----~~~~~~~~i~~~d~~~al~~~~~s 368 (389)
T 3vfd_A 341 QVKN----MSASEMRNIRLSDFTESLKKIKRS 368 (389)
T ss_dssp ---C----CSSSCCCCCCHHHHHHHHHHCCCS
T ss_pred hhhc----cchhhcCCcCHHHHHHHHHHcCCC
Confidence 2211 111223457888999888877654
No 34
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.95 E-value=5.3e-27 Score=253.20 Aligned_cols=241 Identities=39% Similarity=0.597 Sum_probs=201.3
Q ss_pred CCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecch
Q 002045 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (976)
Q Consensus 373 ~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~ 452 (976)
.+.++|++|+|++.++.++++++.. +..+..+..+++..+.|++|+||||||||++++++|..+. ..++.+++.
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~ 83 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS 83 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHH
Confidence 4688999999999999999998776 5678888999999999999999999999999999999874 567888898
Q ss_pred hHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCh---hhhhHHHHHHHHHHHhhccCCCCcEEEEecCCC
Q 002045 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (976)
Q Consensus 453 ~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~---~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~ 529 (976)
++...+.+.....+..+|+.+....|+++||||+|.++..+... .......++..++..|++......++++++||.
T Consensus 84 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~ 163 (254)
T 1ixz_A 84 DFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNR 163 (254)
T ss_dssp HHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESC
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCC
Confidence 88888888888888999999887789999999999987655321 122345678888999988777777899999999
Q ss_pred ccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCC
Q 002045 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (976)
Q Consensus 530 ~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~ 609 (976)
|+.+|++++|++||+..++|+.|+.++|.+||+.+++...+..+.. +..+|..+.|++++||.++|+.|+..+..+..
T Consensus 164 p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~- 241 (254)
T 1ixz_A 164 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD-LALLAKRTPGFVGADLENLLNEAALLAAREGR- 241 (254)
T ss_dssp GGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCC-HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC-
T ss_pred chhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccC-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC-
Confidence 9999999999999999999999999999999999987765443332 57899999999999999999999998887532
Q ss_pred ccccCcccccccccceeEeehhhhhcc
Q 002045 610 QVYTSDDKFLIDVDSVTVEKYHFIEAM 636 (976)
Q Consensus 610 ~~~~~~~~~~~~~~~~~it~~df~~al 636 (976)
..|+.+||..++
T Consensus 242 ---------------~~I~~~dl~~a~ 253 (254)
T 1ixz_A 242 ---------------RKITMKDLEEAA 253 (254)
T ss_dssp ---------------SSBCHHHHHHHT
T ss_pred ---------------CCcCHHHHHHHh
Confidence 136777777654
No 35
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.94 E-value=2.5e-29 Score=312.13 Aligned_cols=265 Identities=35% Similarity=0.614 Sum_probs=212.7
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecc
Q 002045 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (976)
Q Consensus 372 ~~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~ 451 (976)
..+.++|++++|++.+++.|.+++.+|+.++..|..+++.++.++||+||||||||++|+++|..++ ..|+.+++
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~-----~~~i~v~~ 544 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISIKG 544 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT-----CCCCCCCC
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC-----CCEEEEec
Confidence 3478999999999999999999999999999999999999999999999999999999999999995 56788899
Q ss_pred hhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCh---hhhhHHHHHHHHHHHhhccCCCCcEEEEecCC
Q 002045 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (976)
Q Consensus 452 ~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~---~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn 528 (976)
+++.+.|+|+.+..++.+|..+....||||||||||.|++.+... ......+++++||..|+++....+++||+|||
T Consensus 545 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN 624 (806)
T 1ypw_A 545 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN 624 (806)
T ss_dssp SSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCB
T ss_pred hHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecC
Confidence 999999999999999999999999999999999999999877543 23456789999999999988888999999999
Q ss_pred CccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 002045 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (976)
Q Consensus 529 ~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~ 608 (976)
+++.||++++|||||+..|+|+.|+.+++.+||+.+++...+..+.+ +..|+..+.||++++|.++|++|+..++++..
T Consensus 625 ~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~-l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~ 703 (806)
T 1ypw_A 625 RPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD-LEFLAKMTNGFSGADLTEICQRACKLAIRESI 703 (806)
T ss_dssp SCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCC-CSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC-
T ss_pred CcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccC-HHHHHHhccccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998766543333 36788999999999999999999999998754
Q ss_pred CccccCcccc---------cccccceeEeehhhhhcccccccc
Q 002045 609 PQVYTSDDKF---------LIDVDSVTVEKYHFIEAMSTITPA 642 (976)
Q Consensus 609 ~~~~~~~~~~---------~~~~~~~~it~~df~~al~~i~p~ 642 (976)
.......... ........|+.+||..++..++|.
T Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s 746 (806)
T 1ypw_A 704 ESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 746 (806)
T ss_dssp -----------------------CCTTTTTTSSCCCCCC----
T ss_pred HHHHhhhhhhcccccccccccccccCccCHHHHHHHHHhCCCC
Confidence 3211100000 000112347788888887766654
No 36
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.94 E-value=7.5e-26 Score=247.62 Aligned_cols=242 Identities=39% Similarity=0.592 Sum_probs=201.0
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecc
Q 002045 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (976)
Q Consensus 372 ~~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~ 451 (976)
..+.++|++|+|+++++.+|++++.. +..+..+..+++..+.+++|+||||||||++++++|..+. ..++.+++
T Consensus 33 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~ 106 (278)
T 1iy2_A 33 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASG 106 (278)
T ss_dssp CCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEH
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC-----CCEEEecH
Confidence 34789999999999999999998776 5678888889999999999999999999999999999874 56788889
Q ss_pred hhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCh---hhhhHHHHHHHHHHHhhccCCCCcEEEEecCC
Q 002045 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (976)
Q Consensus 452 ~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~---~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn 528 (976)
.++...+.+.....+..+|+.+....|+++||||+|.+...+... ........+..++..|++......++++++||
T Consensus 107 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~ 186 (278)
T 1iy2_A 107 SDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATN 186 (278)
T ss_dssp HHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEES
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecC
Confidence 888888888888888999999987789999999999987654321 11234567788888888777667789999999
Q ss_pred CccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 002045 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (976)
Q Consensus 529 ~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~ 608 (976)
.|+.||++++|++||+..|+|+.|+.++|.+||+.+++...+..+.. +..+|..+.|++++||.++|+.|+..+..+..
T Consensus 187 ~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~ 265 (278)
T 1iy2_A 187 RPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD-LALLAKRTPGFVGADLENLLNEAALLAAREGR 265 (278)
T ss_dssp CTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCC-HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccC-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999987765443332 57899999999999999999999988876532
Q ss_pred CccccCcccccccccceeEeehhhhhcc
Q 002045 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAM 636 (976)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~it~~df~~al 636 (976)
..|+.+||..++
T Consensus 266 ----------------~~I~~~dl~~a~ 277 (278)
T 1iy2_A 266 ----------------RKITMKDLEEAA 277 (278)
T ss_dssp ----------------CSBCHHHHHHHT
T ss_pred ----------------CCcCHHHHHHHh
Confidence 136777777664
No 37
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.94 E-value=2.7e-28 Score=265.42 Aligned_cols=250 Identities=38% Similarity=0.592 Sum_probs=201.3
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
+.++|++|+|++.+++.|.+++.+ +.+++.|..++...+.++||+||||||||++|+++|+.++ .+|+.+++..
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~-----~~~~~v~~~~ 79 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH-----VPFFSMGGSS 79 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT-----CCCCCCCSCT
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC-----CCEEEechHH
Confidence 578999999999999999998876 7899999999999999999999999999999999999985 5677788888
Q ss_pred HHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChh----hhhHHHHHHHHHHHhhccCC-CCcEEEEecCC
Q 002045 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ----EQIHNSIVSTLLALMDGLDS-RGQVVLIGATN 528 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~----~~~~~~~~~~Ll~~ld~~~~-~~~vivI~atn 528 (976)
+...+.|.....++.+|..+....|+||||||+|.|.+.+...+ ......++..|+..+++... ...++||++||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn 159 (268)
T 2r62_A 80 FIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATN 159 (268)
T ss_dssp TTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBS
T ss_pred HHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecC
Confidence 88877777766778889999888899999999999987643211 01112345667777776543 34589999999
Q ss_pred CccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 002045 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (976)
Q Consensus 529 ~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~ 608 (976)
.++.++++++++|||+..++|+.|+.++|.+||+.++.......+.. +..++..+.|+++++|.++|+.|+..|..+.
T Consensus 160 ~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~- 237 (268)
T 2r62_A 160 RPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVN-LQEVAKLTAGLAGADLANIINEAALLAGRNN- 237 (268)
T ss_dssp CCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCC-TTTTTSSSCSSCHHHHHHHHHHHHHTTSSSC-
T ss_pred CchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccC-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-
Confidence 99999999999999999999999999999999999998765543322 4678889999999999999999987665431
Q ss_pred CccccCcccccccccceeEeehhhhhcccccccccccc
Q 002045 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHRG 646 (976)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~it~~df~~al~~i~p~~~r~ 646 (976)
...|+.+++..++..+.+...+.
T Consensus 238 ---------------~~~i~~~~~~~a~~~~~~~~~~~ 260 (268)
T 2r62_A 238 ---------------QKEVRQQHLKEAVERGIAGLEKK 260 (268)
T ss_dssp ---------------CCSCCHHHHHTSCTTCCCCCC--
T ss_pred ---------------cCCcCHHHHHHHHHHHhhcchhh
Confidence 12478889999988887765443
No 38
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.92 E-value=4.1e-26 Score=252.57 Aligned_cols=225 Identities=20% Similarity=0.285 Sum_probs=181.2
Q ss_pred ccccccccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHH
Q 002045 644 HRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAI 723 (976)
Q Consensus 644 ~r~~~~~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~ai 723 (976)
.++.....+.+.|.++.|+...++.+.+.+.. ++.+++.+..+++.+ +.++||+||||||||++|++|
T Consensus 2 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~---~~~~~~~~~~~~~~~---------~~~vLL~Gp~GtGKT~la~al 69 (301)
T 3cf0_A 2 LRETVVEVPQVTWEDIGGLEDVKRELQELVQY---PVEHPDKFLKFGMTP---------SKGVLFYGPPGCGKTLLAKAI 69 (301)
T ss_dssp CCCCCEECCCCCGGGSCSCHHHHHHHHHHHHH---HHHCHHHHHHHCCCC---------CSEEEEECSSSSSHHHHHHHH
T ss_pred CccccccCCCCCHHHhCCHHHHHHHHHHHHHH---HhhCHHHHHHcCCCC---------CceEEEECCCCcCHHHHHHHH
Confidence 34555667889999999998887777766432 345566676666422 468999999999999999999
Q ss_pred HHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHHH----------HHHHHHHHHHHHh
Q 002045 724 LHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENA----------HEQLRAVLLTLLE 793 (976)
Q Consensus 724 a~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~----------~~~~~~~l~~ll~ 793 (976)
|.++ +.+++.++++++++.| .|+++..++.+|..|+...|+||||||||.+.... ..++...|+..|+
T Consensus 70 a~~~-~~~~i~v~~~~l~~~~-~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~ 147 (301)
T 3cf0_A 70 ANEC-QANFISIKGPELLTMW-FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMD 147 (301)
T ss_dssp HHHT-TCEEEEECHHHHHHHH-HTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHH
T ss_pred HHHh-CCCEEEEEhHHHHhhh-cCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhh
Confidence 9998 7899999999998876 68889999999999999999999999999998642 2456778888898
Q ss_pred hCCCCCCEEEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCC
Q 002045 794 ELPSHLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELP 871 (976)
Q Consensus 794 ~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La 871 (976)
++....+|+||+|||++ +.|++ +.++++| .+++|++|+.++|.+||+.++.. .....++++..|+
T Consensus 148 ~~~~~~~v~vi~atn~~-~~ld~--al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~----------~~~~~~~~~~~la 214 (301)
T 3cf0_A 148 GMSTKKNVFIIGATNRP-DIIDP--AILRPGRLDQLIYIPLPDEKSRVAILKANLRK----------SPVAKDVDLEFLA 214 (301)
T ss_dssp SSCTTSSEEEEEEESCG-GGSCG--GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT----------SCBCSSCCHHHHH
T ss_pred cccCCCCEEEEEecCCc-cccCh--HHhcCCccceEEecCCcCHHHHHHHHHHHHcc----------CCCCccchHHHHH
Confidence 88777899999999999 88888 6666333 78999999999999999988862 2334567788888
Q ss_pred CCCCCCCCCchhHHHHHH-HHHHHHHHh
Q 002045 872 KVPTVESGPKASELKAKV-EAEQHALRR 898 (976)
Q Consensus 872 ~~~~~~sg~s~aelk~~~-ea~~~alre 898 (976)
..+.+++| ++|+++| ++...++++
T Consensus 215 ~~~~g~sg---~dl~~l~~~a~~~a~~~ 239 (301)
T 3cf0_A 215 KMTNGFSG---ADLTEICQRACKLAIRE 239 (301)
T ss_dssp HTCSSCCH---HHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCH---HHHHHHHHHHHHHHHHH
Confidence 88855554 8999999 777777765
No 39
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.92 E-value=3.2e-26 Score=255.59 Aligned_cols=223 Identities=17% Similarity=0.262 Sum_probs=176.6
Q ss_pred cccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhc
Q 002045 649 VHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELE 728 (976)
Q Consensus 649 ~~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~ 728 (976)
...+.+.|.+++|++..++.+.+.+.. ++.+++.+. |. ..++.++||+||||||||++|+++|+++.
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~---p~~~~~~~~-------~~---~~~~~~iLL~GppGtGKT~la~ala~~~~ 70 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVIL---PIKFPHLFT-------GK---RTPWRGILLFGPPGTGKSYLAKAVATEAN 70 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHH---HHHCGGGSC-------TT---CCCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHH---HHhCHHHHh-------CC---CCCCceEEEECCCCccHHHHHHHHHHHcC
Confidence 346788999999998877777665321 222232222 11 12256899999999999999999999986
Q ss_pred CCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH-------HHHHHHHHHHHHHhhCC-CCCC
Q 002045 729 KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLEELP-SHLP 800 (976)
Q Consensus 729 ~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~-------~~~~~~~~l~~ll~~~~-~~~~ 800 (976)
+.+|+.+++++++++| .|++++.++.+|..|+...|+||||||||.+.+. ...++.+.|++.|+++. ...+
T Consensus 71 ~~~~~~i~~~~l~~~~-~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 71 NSTFFSISSSDLVSKW-LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp SCEEEEEECCSSCCSS-CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred CCcEEEEEhHHHHhhh-hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 7899999999999886 7999999999999999999999999999999642 35677788888888875 3678
Q ss_pred EEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCC
Q 002045 801 ILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGP 880 (976)
Q Consensus 801 v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~sg~ 880 (976)
|+||+|||.+ +.|++ +.++++..+++|++|+.++|.+||+.++.. ......+.++..|+..+.++
T Consensus 150 v~vI~atn~~-~~ld~--al~rRf~~~i~i~~P~~~~r~~il~~~l~~---------~~~~l~~~~l~~la~~t~G~--- 214 (322)
T 1xwi_A 150 ILVLGATNIP-WVLDS--AIRRRFEKRIYIPLPEPHARAAMFKLHLGT---------TQNSLTEADFRELGRKTDGY--- 214 (322)
T ss_dssp EEEEEEESCT-TTSCH--HHHHTCCEEEECCCCCHHHHHHHHHHHHTT---------CCBCCCHHHHHHHHHTCTTC---
T ss_pred EEEEEecCCc-ccCCH--HHHhhcCeEEEeCCcCHHHHHHHHHHHHhc---------CCCCCCHHHHHHHHHHcCCC---
Confidence 9999999999 88988 666666688899999999999999998862 11123456788889888555
Q ss_pred chhHHHHHH-HHHHHHHHhHh
Q 002045 881 KASELKAKV-EAEQHALRRLR 900 (976)
Q Consensus 881 s~aelk~~~-ea~~~alreLr 900 (976)
++++|..+| ++.+.+++++.
T Consensus 215 sgadl~~l~~~A~~~a~r~~~ 235 (322)
T 1xwi_A 215 SGADISIIVRDALMQPVRKVQ 235 (322)
T ss_dssp CHHHHHHHHHHHHTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 559999999 88888888743
No 40
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.91 E-value=1.9e-25 Score=249.73 Aligned_cols=224 Identities=17% Similarity=0.218 Sum_probs=176.2
Q ss_pred ccccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhh
Q 002045 648 TVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHEL 727 (976)
Q Consensus 648 ~~~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l 727 (976)
....+.+.|.++.|+...++.+.+.+.. ++..+..+.. ...++.++||+||||||||++|++||+++
T Consensus 9 ~~~~~~~~~~di~G~~~~~~~l~~~i~~---~~~~~~~~~~----------~~~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 9 LSEKPNVKWEDVAGLEGAKEALKEAVIL---PVKFPHLFKG----------NRKPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHTHH---HHHCGGGCCT----------TCCCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred eecCCCCCHHHhcChHHHHHHHHHHHHH---HHhCHHHHhc----------CCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4457788999999998888777766321 1222222111 11225689999999999999999999998
Q ss_pred cCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH-------HHHHHHHHHHHHHhhCC-CCC
Q 002045 728 EKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLEELP-SHL 799 (976)
Q Consensus 728 ~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~-------~~~~~~~~l~~ll~~~~-~~~ 799 (976)
+.+|+.+++++++++| .|+++..++.+|..|+...|+||||||||.+... ...++...|+..|+++. ...
T Consensus 76 -~~~~~~v~~~~l~~~~-~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 76 -NSTFFSVSSSDLVSKW-MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp -TCEEEEEEHHHHHTTT-GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred -CCCEEEEchHHHhhcc-cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 7899999999999886 7999999999999999999999999999999743 23567788888888874 467
Q ss_pred CEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCC
Q 002045 800 PILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESG 879 (976)
Q Consensus 800 ~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~sg 879 (976)
+|+||+|||.+ +.|++ +.++++..+++|++|+.++|.+||+.++.. ......+.++..|+..+.+
T Consensus 154 ~v~vi~atn~~-~~ld~--al~~Rf~~~i~~~~p~~~~r~~il~~~~~~---------~~~~~~~~~l~~la~~t~g--- 218 (322)
T 3eie_A 154 GVLVLGATNIP-WQLDS--AIRRRFERRIYIPLPDLAARTTMFEINVGD---------TPCVLTKEDYRTLGAMTEG--- 218 (322)
T ss_dssp CEEEEEEESCG-GGSCH--HHHHHCCEEEECCCCCHHHHHHHHHHHHTT---------CCCCCCHHHHHHHHHTTTT---
T ss_pred ceEEEEecCCh-hhCCH--HHHcccCeEEEeCCCCHHHHHHHHHHHhcc---------CCCCCCHHHHHHHHHHcCC---
Confidence 89999999999 78988 666666688899999999999999998862 1222345677888888855
Q ss_pred CchhHHHHHH-HHHHHHHHhHhh
Q 002045 880 PKASELKAKV-EAEQHALRRLRM 901 (976)
Q Consensus 880 ~s~aelk~~~-ea~~~alreLr~ 901 (976)
+++++|..+| ++.+.+++++..
T Consensus 219 ~sg~di~~l~~~a~~~a~r~~~~ 241 (322)
T 3eie_A 219 YSGSDIAVVVKDALMQPIRKIQS 241 (322)
T ss_dssp CCHHHHHHHHHHHTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhh
Confidence 4559999999 888888888544
No 41
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.91 E-value=1.3e-24 Score=236.71 Aligned_cols=224 Identities=19% Similarity=0.273 Sum_probs=170.0
Q ss_pred ccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcC
Q 002045 650 HSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEK 729 (976)
Q Consensus 650 ~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~ 729 (976)
..+.+.|.+++|+....+++.+.+ ..++..+..+..+++. .++|+||+||||||||+||++||..+ +
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~---------~~~GvlL~Gp~GtGKTtLakala~~~-~ 69 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLV---------TPAGVLLAGPPGCGKTLLAKAVANES-G 69 (274)
T ss_dssp ---------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCC---------CCSEEEEESSTTSCHHHHHHHHHHHT-T
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCC---------CCCeEEEECCCCCcHHHHHHHHHHHc-C
Confidence 346789999999988877776653 2345566777776642 25689999999999999999999997 6
Q ss_pred CCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHHH-------HHHHHHHHHHHHhhCCCCCCEE
Q 002045 730 FPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENA-------HEQLRAVLLTLLEELPSHLPIL 802 (976)
Q Consensus 730 ~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~-------~~~~~~~l~~ll~~~~~~~~v~ 802 (976)
.+++.++..++.+.| .|++++.++.+|+.|+...|||+||||++.++... ..++.+.++..|++......++
T Consensus 70 ~~~i~i~g~~l~~~~-~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i 148 (274)
T 2x8a_A 70 LNFISVKGPELLNMY-VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVF 148 (274)
T ss_dssp CEEEEEETTTTCSST-THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEE
T ss_pred CCEEEEEcHHHHhhh-hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEE
Confidence 789999999988776 68889999999999998999999999999976321 1245667777888877788999
Q ss_pred EEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCC
Q 002045 803 LLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGP 880 (976)
Q Consensus 803 vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~sg~ 880 (976)
++|+||+| +.||+ +.+|++| ..|+|++|+.++|.+||+.++.+. .......++++..|+..+. ..|+
T Consensus 149 ~ia~tn~p-~~LD~--al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~-------~~~~~~~~~~~~~la~~~~-~~g~ 217 (274)
T 2x8a_A 149 IMAATNRP-DIIDP--AILRPGRLDKTLFVGLPPPADRLAILKTITKNG-------TKPPLDADVNLEAIAGDLR-CDCY 217 (274)
T ss_dssp EEEEESCG-GGSCH--HHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTT-------BTTBBCTTCCHHHHHTCSG-GGSC
T ss_pred EEeecCCh-hhCCH--hhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcc-------cCCCCccccCHHHHHHhhc-cCCc
Confidence 99999999 88999 7666444 888899999999999999887520 0123345788888988752 1355
Q ss_pred chhHHHHHH-HHHHHHHHh
Q 002045 881 KASELKAKV-EAEQHALRR 898 (976)
Q Consensus 881 s~aelk~~~-ea~~~alre 898 (976)
++++|.++| +|.+.++++
T Consensus 218 sgadl~~l~~~a~~~a~~~ 236 (274)
T 2x8a_A 218 TGADLSALVREASICALRQ 236 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 669999999 888888876
No 42
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.90 E-value=5.1e-25 Score=249.23 Aligned_cols=222 Identities=17% Similarity=0.229 Sum_probs=168.4
Q ss_pred cccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhc
Q 002045 649 VHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELE 728 (976)
Q Consensus 649 ~~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~ 728 (976)
...+.+.|.++.|+...++.+.+.+.. ++.++..+.. ...++.++||+||||||||++|++||+++
T Consensus 43 ~~~~~~~~~di~G~~~~~~~l~~~v~~---~~~~~~~~~~----------~~~~~~~iLL~GppGtGKT~la~ala~~~- 108 (355)
T 2qp9_X 43 SEKPNVKWEDVAGLEGAKEALKEAVIL---PVKFPHLFKG----------NRKPTSGILLYGPPGTGKSYLAKAVATEA- 108 (355)
T ss_dssp ----CCCGGGSCCGGGHHHHHHHHTHH---HHHCGGGGCS----------SCCCCCCEEEECSTTSCHHHHHHHHHHHH-
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHH---HHhCHHHHhc----------CCCCCceEEEECCCCCcHHHHHHHHHHHh-
Confidence 346678899999998877777665321 1222222221 11224689999999999999999999998
Q ss_pred CCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH-------HHHHHHHHHHHHHhhCCC-CCC
Q 002045 729 KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLEELPS-HLP 800 (976)
Q Consensus 729 ~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~-------~~~~~~~~l~~ll~~~~~-~~~ 800 (976)
+.+|+.+++++++++| .|+++..++.+|..|+...|+||||||||.+... ...++.+.|+.+|+++.. ..+
T Consensus 109 ~~~~~~v~~~~l~~~~-~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 109 NSTFFSVSSSDLVSKW-MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp TCEEEEEEHHHHHSCC----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred CCCEEEeeHHHHhhhh-cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 7899999999999886 7899999999999999999999999999999743 335667888888888754 678
Q ss_pred EEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCC
Q 002045 801 ILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGP 880 (976)
Q Consensus 801 v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~sg~ 880 (976)
|+||+|||.+ +.|++ +.++++..+++|++|+.++|.+||+.++.. ......+.++..|+..+.+ +
T Consensus 188 v~vI~atn~~-~~ld~--al~rRf~~~i~i~~P~~~~r~~il~~~l~~---------~~~~~~~~~l~~la~~t~G---~ 252 (355)
T 2qp9_X 188 VLVLGATNIP-WQLDS--AIRRRFERRIYIPLPDLAARTTMFEINVGD---------TPSVLTKEDYRTLGAMTEG---Y 252 (355)
T ss_dssp EEEEEEESCG-GGSCH--HHHHTCCEEEECCCCCHHHHHHHHHHHHTT---------SCBCCCHHHHHHHHHHTTT---C
T ss_pred eEEEeecCCc-ccCCH--HHHcccCEEEEeCCcCHHHHHHHHHHHHhh---------CCCCCCHHHHHHHHHHcCC---C
Confidence 9999999999 78888 666666688899999999999999988862 1112345678888888854 4
Q ss_pred chhHHHHHH-HHHHHHHHhHh
Q 002045 881 KASELKAKV-EAEQHALRRLR 900 (976)
Q Consensus 881 s~aelk~~~-ea~~~alreLr 900 (976)
++++|..+| ++.+.++++..
T Consensus 253 sg~dl~~l~~~A~~~a~~~~~ 273 (355)
T 2qp9_X 253 SGSDIAVVVKDALMQPIRKIQ 273 (355)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 559999999 88888888743
No 43
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.89 E-value=1.6e-24 Score=253.51 Aligned_cols=203 Identities=22% Similarity=0.272 Sum_probs=141.0
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
+...|++|+|++++++.+..++.. ...+..+++++||+||||||||++|+++|+.++. .++|+.+++++
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~--------~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~---~~~~~~~~~~~ 100 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVEL--------IKSKKMAGRAVLLAGPPGTGKTALALAIAQELGS---KVPFCPMVGSE 100 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHH--------HHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCT---TSCEEEEEGGG
T ss_pred hhhchhhccCHHHHHHHHHHHHHH--------HHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCC---CceEEEEeHHH
Confidence 566789999999999999887754 1235567899999999999999999999999853 37899999999
Q ss_pred HHhhhHhHHHHHHHHHHHHH---HhcCCcEEEEccccccCCCCCChhhhhHH-------------------HHHHHHHHH
Q 002045 454 VLSKWVGEAERQLKLLFEEA---QRNQPSIIFFDEIDGLAPVRSSKQEQIHN-------------------SIVSTLLAL 511 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a---~~~~p~VL~iDEid~L~~~r~~~~~~~~~-------------------~~~~~Ll~~ 511 (976)
+.+.++|+++. +..+|..+ ....||||||||+|.|++.+......... .+...++..
T Consensus 101 ~~~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~ 179 (456)
T 2c9o_A 101 VYSTEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFES 179 (456)
T ss_dssp GCCSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHH
T ss_pred HHHHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHH
Confidence 99999999987 89999998 67789999999999999887554221111 112234444
Q ss_pred hh--ccCCCCcEEEEecCCCccccchhhcCCCCCcc--ccCCCCCC--HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcc
Q 002045 512 MD--GLDSRGQVVLIGATNRVDAIDGALRRPGRFDR--EFNFPLPG--CEARAEILDIHTRKWKQPPSRELKSELAASCV 585 (976)
Q Consensus 512 ld--~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~--~i~~~~P~--~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~ 585 (976)
++ +....+.++|+++||.++.+++++.|+|||+. .+.+|.|+ ..+|.+|++.+.. ..++.++..+.
T Consensus 180 l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~--------~dl~~~a~~t~ 251 (456)
T 2c9o_A 180 LQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL--------HDLDVANARPQ 251 (456)
T ss_dssp HHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH--------HHHHHTC----
T ss_pred HhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH--------HHHHHHHHhCC
Confidence 43 22333445666999999999999999999998 56667774 4677777765442 24678888899
Q ss_pred CCCHHHHHHHHHH
Q 002045 586 GYCGADLKALCTE 598 (976)
Q Consensus 586 G~s~~dI~~l~~~ 598 (976)
| |+||.++|..
T Consensus 252 g--gadl~~l~~~ 262 (456)
T 2c9o_A 252 G--GQDILSMMGQ 262 (456)
T ss_dssp -------------
T ss_pred C--hhHHHHHHhh
Confidence 8 8999888753
No 44
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.89 E-value=1.7e-24 Score=252.18 Aligned_cols=224 Identities=17% Similarity=0.248 Sum_probs=165.3
Q ss_pred ccccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhh
Q 002045 648 TVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHEL 727 (976)
Q Consensus 648 ~~~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l 727 (976)
....+.+.|.++.|+...++.+.+.+.. ++.++..+... ..++.++||+||||||||++|++||.++
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~---p~~~~~~~~~~----------~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVIL---PIKFPHLFTGK----------RTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTH---HHHCTTTTSGG----------GCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHH---HhhCHHHhhcc----------CCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 3456788999999998887777665321 22222222110 1124689999999999999999999998
Q ss_pred cCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH-------HHHHHHHHHHHHHhhCC-CCC
Q 002045 728 EKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLEELP-SHL 799 (976)
Q Consensus 728 ~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~-------~~~~~~~~l~~ll~~~~-~~~ 799 (976)
.+.+|+.++++++++.| .|+++..++.+|..|+...|+||||||||.+.+. ...++.+.|++.|+++. ...
T Consensus 192 ~~~~~~~v~~~~l~~~~-~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 270 (444)
T 2zan_A 192 NNSTFFSISSSDLVSKW-LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 270 (444)
T ss_dssp CSSEEEEECCC----------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCS
T ss_pred CCCCEEEEeHHHHHhhh-cchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCC
Confidence 67899999999999886 7888999999999999999999999999999632 34566666777776664 367
Q ss_pred CEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCC
Q 002045 800 PILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESG 879 (976)
Q Consensus 800 ~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~sg 879 (976)
+|+||+|||.+ +.|++ +.++++..+++|++|+.++|..||+.++.. ......+.++..|+..+.+
T Consensus 271 ~v~vI~atn~~-~~ld~--al~rRf~~~i~i~~P~~~~r~~il~~~l~~---------~~~~l~~~~l~~la~~t~G--- 335 (444)
T 2zan_A 271 GILVLGATNIP-WVLDS--AIRRRFEKRIYIPLPEAHARAAMFRLHLGS---------TQNSLTEADFQELGRKTDG--- 335 (444)
T ss_dssp SCEEEEEESCG-GGSCH--HHHTTCCEEEECCCCCHHHHHHHHHHHHTT---------SCEECCHHHHHHHHHHTTT---
T ss_pred CEEEEecCCCc-cccCH--HHHhhcceEEEeCCcCHHHHHHHHHHHHhc---------CCCCCCHHHHHHHHHHcCC---
Confidence 89999999999 88888 666665578899999999999999998862 1111345678888888854
Q ss_pred CchhHHHHHH-HHHHHHHHhHh
Q 002045 880 PKASELKAKV-EAEQHALRRLR 900 (976)
Q Consensus 880 ~s~aelk~~~-ea~~~alreLr 900 (976)
+++++|..+| ++.+.+++++.
T Consensus 336 ~sgadl~~l~~~a~~~a~r~~~ 357 (444)
T 2zan_A 336 YSGADISIIVRDALMQPVRKVQ 357 (444)
T ss_dssp CCHHHHHHHHHHHHTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 4559999999 88888888743
No 45
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.88 E-value=7.5e-23 Score=237.58 Aligned_cols=215 Identities=19% Similarity=0.253 Sum_probs=168.4
Q ss_pred CCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcCCC
Q 002045 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFP 731 (976)
Q Consensus 652 ~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~~ 731 (976)
+.+.|.++.|+...++++.+.+..+ ..+..+..+++ ..++++||+||||||||++|++||.++ +.+
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l----~~~~~~~~~g~---------~~p~gvLL~GppGtGKT~Laraia~~~-~~~ 76 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFL----KDPSKFNRIGA---------RMPKGILLVGPPGTGKTLLARAVAGEA-NVP 76 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHH----HCTHHHHTTTC---------CCCSEEEEECCTTSSHHHHHHHHHHHH-TCC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHh----hChHHHhhcCC---------CCCCeEEEECCCCCCHHHHHHHHHHHc-CCC
Confidence 4567888888877777776654322 23445555543 224689999999999999999999998 789
Q ss_pred eeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH----------HHHHHHHHHHHHHhhCCCCCCE
Q 002045 732 VHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN----------AHEQLRAVLLTLLEELPSHLPI 801 (976)
Q Consensus 732 ~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~----------~~~~~~~~l~~ll~~~~~~~~v 801 (976)
|+.+++++++..+ .|..+..++.+|..|+...||||||||||.+... .....++.|+..|+.+....+|
T Consensus 77 f~~is~~~~~~~~-~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 77 FFHISGSDFVELF-VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp EEEEEGGGTTTCC-TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred eeeCCHHHHHHHH-hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 9999999998775 7888999999999999999999999999998642 1234567777777777667799
Q ss_pred EEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCC
Q 002045 802 LLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESG 879 (976)
Q Consensus 802 ~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~sg 879 (976)
+||+|||++ +.|++ +.++++| .++.|++|+.++|.+||+.++. ......++++..|+..++ |
T Consensus 156 iVIaaTn~~-~~Ld~--allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~----------~~~l~~~v~l~~la~~t~---G 219 (476)
T 2ce7_A 156 IVMAATNRP-DILDP--ALLRPGRFDKKIVVDPPDMLGRKKILEIHTR----------NKPLAEDVNLEIIAKRTP---G 219 (476)
T ss_dssp EEEEEESCG-GGSCG--GGGSTTSSCEEEECCCCCHHHHHHHHHHHHT----------TSCBCTTCCHHHHHHTCT---T
T ss_pred EEEEecCCh-hhhch--hhcccCcceeEeecCCCCHHHHHHHHHHHHH----------hCCCcchhhHHHHHHhcC---C
Confidence 999999998 88988 5555444 6888999999999999998876 233345677888888774 5
Q ss_pred CchhHHHHHH-HHHHHHHH
Q 002045 880 PKASELKAKV-EAEQHALR 897 (976)
Q Consensus 880 ~s~aelk~~~-ea~~~alr 897 (976)
+++++|.++| ++...+.+
T Consensus 220 ~sgadL~~lv~~Aal~A~~ 238 (476)
T 2ce7_A 220 FVGADLENLVNEAALLAAR 238 (476)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 5559999999 77777664
No 46
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.87 E-value=6.8e-23 Score=225.66 Aligned_cols=175 Identities=18% Similarity=0.247 Sum_probs=134.9
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhHhHHHHHHHHHHHHH----HhcCCcEEEE
Q 002045 408 YHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEA----QRNQPSIIFF 483 (976)
Q Consensus 408 ~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a----~~~~p~VL~i 483 (976)
.+.++|.++|||||||||||++|+++|+.++ .+|+.++++++.+.++|.....++.+|..+ +...|+||||
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~-----~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~i 105 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMG-----INPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFI 105 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHT-----CCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEE
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 3567889999999999999999999999995 778899999999999999999999999988 4668999999
Q ss_pred ccccccCCCCCChh--hhhHHHHHHHHHHHhhccC-----------CCCcEEEEecCCCccccchhhcCCCCCccccCCC
Q 002045 484 DEIDGLAPVRSSKQ--EQIHNSIVSTLLALMDGLD-----------SRGQVVLIGATNRVDAIDGALRRPGRFDREFNFP 550 (976)
Q Consensus 484 DEid~L~~~r~~~~--~~~~~~~~~~Ll~~ld~~~-----------~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~ 550 (976)
||||.+++.+.... ......++..|+.+|++.. ...+++||+|||.++.|+++|+|+|||+..|++
T Consensus 106 DEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~- 184 (293)
T 3t15_A 106 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA- 184 (293)
T ss_dssp ECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC-
T ss_pred echhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC-
Confidence 99999987543221 1234567789999987433 456799999999999999999999999988874
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHH
Q 002045 551 LPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKA 594 (976)
Q Consensus 551 ~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~ 594 (976)
|+.++|.+|++.++....+. ...++..+.||++++|..
T Consensus 185 -P~~~~r~~Il~~~~~~~~~~-----~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 185 -PTREDRIGVCTGIFRTDNVP-----AEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp -CCHHHHHHHHHHHHGGGCCC-----HHHHHHHHHHSCSCCHHH
T ss_pred -cCHHHHHHHHHHhccCCCCC-----HHHHHHHhCCCCcccHHH
Confidence 69999999999888765432 356778888888888764
No 47
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.87 E-value=1.5e-22 Score=237.04 Aligned_cols=217 Identities=18% Similarity=0.277 Sum_probs=177.3
Q ss_pred CCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcCCC
Q 002045 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFP 731 (976)
Q Consensus 652 ~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~~ 731 (976)
..+.|.++.|+...++.+.+.+.. ++..+..+..++... +.++||+||||||||++|++||+.+ +.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~---~l~~~~~~~~~g~~~---------~~~vLL~GppGtGKT~lAraia~~~-~~~ 265 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVEL---PLRHPALFKAIGVKP---------PRGILLYGPPGTGKTLIARAVANET-GAF 265 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHH---HHHCHHHHHHHTCCC---------CCEEEEECSTTSSHHHHHHHHHHHC-SSE
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHH---HhhCHHHHHhcCCCC---------CCcEEEECcCCCCHHHHHHHHHHHh-CCC
Confidence 456788888888888887776533 344566677665422 4689999999999999999999998 789
Q ss_pred eeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH-------HHHHHHHHHHHHHhhCCCCCCEEEE
Q 002045 732 VHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLEELPSHLPILLL 804 (976)
Q Consensus 732 ~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~-------~~~~~~~~l~~ll~~~~~~~~v~vi 804 (976)
|+.++++.+.+.+ .|+++..++.+|..|....|+||||||||.+.+. ....+...|+.+|+.+.....++||
T Consensus 266 fv~vn~~~l~~~~-~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vI 344 (489)
T 3hu3_A 266 FFLINGPEIMSKL-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM 344 (489)
T ss_dssp EEEEEHHHHHTSC-TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEE
T ss_pred EEEEEchHhhhhh-cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEE
Confidence 9999999999886 6999999999999999999999999999999742 4457788899999998888899999
Q ss_pred EecCCCcccCcCCCCCCc--CCccEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCch
Q 002045 805 GSSSVPLAEVEGDPSTVF--PLRSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPKA 882 (976)
Q Consensus 805 ~ttn~~~~~Ld~~~~~~~--~~r~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~sg~s~ 882 (976)
+|||++ +.|++ +.++ +++.+++|++|+.++|.+||+.++. ......+.++..|+..+.+ +++
T Consensus 345 aaTn~~-~~Ld~--al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~----------~~~l~~~~~l~~la~~t~g---~s~ 408 (489)
T 3hu3_A 345 AATNRP-NSIDP--ALRRFGRFDREVDIGIPDATGRLEILQIHTK----------NMKLADDVDLEQVANETHG---HVG 408 (489)
T ss_dssp EEESCG-GGBCG--GGGSTTSSCEEEECCCCCHHHHHHHHHHHTT----------TSCBCTTCCHHHHHHTCTT---CCH
T ss_pred EecCCc-cccCH--HHhCCCcCceEEEeCCCCHHHHHHHHHHHHh----------cCCCcchhhHHHHHHHccC---CcH
Confidence 999999 78888 4444 3337899999999999999998876 2344456778888888854 455
Q ss_pred hHHHHHH-HHHHHHHHh
Q 002045 883 SELKAKV-EAEQHALRR 898 (976)
Q Consensus 883 aelk~~~-ea~~~alre 898 (976)
++|..+| ++...++++
T Consensus 409 ~dL~~L~~~A~~~a~r~ 425 (489)
T 3hu3_A 409 ADLAALCSEAALQAIRK 425 (489)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 9999999 888877776
No 48
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.86 E-value=8.2e-22 Score=216.10 Aligned_cols=218 Identities=21% Similarity=0.267 Sum_probs=167.4
Q ss_pred cCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcCC
Q 002045 651 SRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKF 730 (976)
Q Consensus 651 ~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~ 730 (976)
.+.+.|.++.|++..++.+...+.. ++..+..+..+++. .+.++||+||||||||++|+++|+.+ +.
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~---~~~~~~~~~~~~~~---------~~~~~ll~G~~GtGKT~la~~la~~~-~~ 77 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVEL---PLKHPELFEKVGIE---------PPKGILLYGPPGTGKTLLAKAVATET-NA 77 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHH---HHHCHHHHHHHCCC---------CCSEEEEESSSSSSHHHHHHHHHHHT-TC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHH---HhhCHHHHHhcCCC---------CCCeEEEECCCCCcHHHHHHHHHHHh-CC
Confidence 4567889999998888887776432 23445566666532 24689999999999999999999998 78
Q ss_pred CeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH----------HHHHHHHHHHHHHhhCCCCCC
Q 002045 731 PVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN----------AHEQLRAVLLTLLEELPSHLP 800 (976)
Q Consensus 731 ~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~----------~~~~~~~~l~~ll~~~~~~~~ 800 (976)
+++.+++..++..+ .|..+..+..+|..++...|+||||||||.+... .....+..++..++.+....+
T Consensus 78 ~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 156 (285)
T 3h4m_A 78 TFIRVVGSELVKKF-IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGD 156 (285)
T ss_dssp EEEEEEGGGGCCCS-TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSS
T ss_pred CEEEEehHHHHHhc-cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 99999999998876 7899999999999999999999999999999632 222333334444455566678
Q ss_pred EEEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 002045 801 ILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVES 878 (976)
Q Consensus 801 v~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~s 878 (976)
++||+|||.+ +.|++ +.++++| .++.|++|+.++|.+||+.++. ......+.++..|+..+.
T Consensus 157 ~~vI~ttn~~-~~l~~--~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~----------~~~~~~~~~~~~l~~~~~--- 220 (285)
T 3h4m_A 157 VKIIGATNRP-DILDP--AILRPGRFDRIIEVPAPDEKGRLEILKIHTR----------KMNLAEDVNLEEIAKMTE--- 220 (285)
T ss_dssp EEEEEECSCG-GGBCH--HHHSTTSEEEEEECCCCCHHHHHHHHHHHHT----------TSCBCTTCCHHHHHHHCT---
T ss_pred EEEEEeCCCc-hhcCH--HHcCCCcCCeEEEECCCCHHHHHHHHHHHHh----------cCCCCCcCCHHHHHHHcC---
Confidence 9999999998 88887 5555333 6899999999999999998876 233345567788888884
Q ss_pred CCchhHHHHHH-HHHHHHHHh
Q 002045 879 GPKASELKAKV-EAEQHALRR 898 (976)
Q Consensus 879 g~s~aelk~~~-ea~~~alre 898 (976)
|++++++..+| .+...++.+
T Consensus 221 g~~~~~i~~l~~~a~~~a~~~ 241 (285)
T 3h4m_A 221 GCVGAELKAICTEAGMNAIRE 241 (285)
T ss_dssp TCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHh
Confidence 45569999998 777777665
No 49
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.86 E-value=1.5e-21 Score=210.81 Aligned_cols=217 Identities=17% Similarity=0.219 Sum_probs=160.2
Q ss_pred cCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcCC
Q 002045 651 SRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKF 730 (976)
Q Consensus 651 ~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~ 730 (976)
.+...|.++.|+...++++...+..+ ..+..+..++. ..+.++||+||||||||++|+++|+.+ +.
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~~----~~~~~~~~~~~---------~~~~~vll~G~~GtGKT~la~~la~~~-~~ 71 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEYL----REPSRFQKLGG---------KIPKGVLMVGPPGTGKTLLAKAIAGEA-KV 71 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHHH----HCGGGC--------------CCCCEEEEECCTTSCHHHHHHHHHHHH-TC
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHHH----hCHHHHHHcCC---------CCCCeEEEECcCCCCHHHHHHHHHHHc-CC
Confidence 34567888888877766665543221 12223333332 224689999999999999999999998 77
Q ss_pred CeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHHH----------HHHHHHHHHHHHhhCCCCCC
Q 002045 731 PVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENA----------HEQLRAVLLTLLEELPSHLP 800 (976)
Q Consensus 731 ~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~----------~~~~~~~l~~ll~~~~~~~~ 800 (976)
+++.++++.+...+ .|..+..++.+|+.|....|+||||||||.+.... ....++.++..|+.+....+
T Consensus 72 ~~~~i~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (257)
T 1lv7_A 72 PFFTISGSDFVEMF-VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 150 (257)
T ss_dssp CEEEECSCSSTTSC-CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSC
T ss_pred CEEEEeHHHHHHHh-hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCC
Confidence 99999999888765 68889999999999999899999999999987431 23556667777777777778
Q ss_pred EEEEEecCCCcccCcCCCCCCcCC--ccEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 002045 801 ILLLGSSSVPLAEVEGDPSTVFPL--RSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVES 878 (976)
Q Consensus 801 v~vi~ttn~~~~~Ld~~~~~~~~~--r~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~s 878 (976)
++||+|||.+ +.|++ +.++++ ..+++|++|+.++|.+||+.++.. .....+.++..++..+ .
T Consensus 151 ~~vI~~tn~~-~~l~~--~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~----------~~l~~~~~~~~la~~~---~ 214 (257)
T 1lv7_A 151 IIVIAATNRP-DVLDP--ALLRPGRFDRQVVVGLPDVRGREQILKVHMRR----------VPLAPDIDAAIIARGT---P 214 (257)
T ss_dssp EEEEEEESCT-TTSCG--GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT----------SCBCTTCCHHHHHHTC---T
T ss_pred EEEEEeeCCc-hhCCH--HHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc----------CCCCccccHHHHHHHc---C
Confidence 9999999999 78887 544432 368889999999999999988762 2233345555566555 5
Q ss_pred CCchhHHHHHH-HHHHHHHHh
Q 002045 879 GPKASELKAKV-EAEQHALRR 898 (976)
Q Consensus 879 g~s~aelk~~~-ea~~~alre 898 (976)
|+++++|..++ ++...+..+
T Consensus 215 G~~~~dl~~l~~~a~~~a~~~ 235 (257)
T 1lv7_A 215 GFSGADLANLVNEAALFAARG 235 (257)
T ss_dssp TCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHh
Confidence 66779999998 666666543
No 50
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.85 E-value=2.6e-22 Score=227.41 Aligned_cols=221 Identities=17% Similarity=0.239 Sum_probs=165.7
Q ss_pred ccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcC
Q 002045 650 HSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEK 729 (976)
Q Consensus 650 ~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~ 729 (976)
..+.+.|.++.|+...++.+.+.+.. ++..+..+..++ ..+.++||+||||||||++|++||+.+ +
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~---~~~~~~~~~~~~----------~~~~~vLl~GppGtGKT~la~aia~~~-~ 142 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVW---PMLRPDIFTGLR----------GPPKGILLFGPPGTGKTLIGKCIASQS-G 142 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHH---HHHCTTTSCGGG----------SCCSEEEEESSTTSSHHHHHHHHHHHT-T
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHH---HhhChHhHhhcc----------CCCceEEEECCCCCCHHHHHHHHHHHc-C
Confidence 34577889998888877777766421 111122121111 124689999999999999999999998 7
Q ss_pred CCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH-------HHHHHHHHHHHHHhhCC--CCCC
Q 002045 730 FPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLEELP--SHLP 800 (976)
Q Consensus 730 ~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~-------~~~~~~~~l~~ll~~~~--~~~~ 800 (976)
.+|+.++++.++..| .|+.+..++.+|..|+...|+||||||||.+... ....+.+.|+..|+++. ...+
T Consensus 143 ~~~~~i~~~~l~~~~-~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~ 221 (357)
T 3d8b_A 143 ATFFSISASSLTSKW-VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDR 221 (357)
T ss_dssp CEEEEEEGGGGCCSS-TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCC
T ss_pred CeEEEEehHHhhccc-cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 899999999999876 7899999999999999999999999999999642 23456667777777654 2568
Q ss_pred EEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCC
Q 002045 801 ILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGP 880 (976)
Q Consensus 801 v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~sg~ 880 (976)
|+||+|||.+ +.|++ +.++++..+++|++|+.++|.+||+.++.. ......+.++..|+..+. |+
T Consensus 222 v~vI~atn~~-~~l~~--~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~---------~~~~l~~~~l~~la~~t~---G~ 286 (357)
T 3d8b_A 222 ILVVGATNRP-QEIDE--AARRRLVKRLYIPLPEASARKQIVINLMSK---------EQCCLSEEEIEQIVQQSD---AF 286 (357)
T ss_dssp EEEEEEESCG-GGBCH--HHHTTCCEEEECCCCCHHHHHHHHHHHHHT---------SCBCCCHHHHHHHHHHTT---TC
T ss_pred EEEEEecCCh-hhCCH--HHHhhCceEEEeCCcCHHHHHHHHHHHHhh---------cCCCccHHHHHHHHHHcC---CC
Confidence 9999999998 78888 555555578899999999999999998872 111123345666777774 45
Q ss_pred chhHHHHHH-HHHHHHHHhHh
Q 002045 881 KASELKAKV-EAEQHALRRLR 900 (976)
Q Consensus 881 s~aelk~~~-ea~~~alreLr 900 (976)
++++|..+| .+...+++++.
T Consensus 287 s~~dl~~l~~~a~~~~ir~l~ 307 (357)
T 3d8b_A 287 SGADMTQLCREASLGPIRSLQ 307 (357)
T ss_dssp CHHHHHHHHHHHHTHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHHhh
Confidence 559999999 77777787754
No 51
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.84 E-value=2.6e-22 Score=221.48 Aligned_cols=221 Identities=23% Similarity=0.312 Sum_probs=165.1
Q ss_pred ccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcC
Q 002045 650 HSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEK 729 (976)
Q Consensus 650 ~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~ 729 (976)
..+.+.|.++.|....++.+...+.. +..+++.+..++ ..+.++||+||||||||++|+++|..+ +
T Consensus 14 ~~~~~~~~~i~G~~~~~~~l~~~i~~---~~~~~~~~~~~~----------~~~~~vll~Gp~GtGKT~la~~la~~~-~ 79 (297)
T 3b9p_A 14 GGAKVEWTDIAGQDVAKQALQEMVIL---PSVRPELFTGLR----------APAKGLLLFGPPGNGKTLLARAVATEC-S 79 (297)
T ss_dssp CSSCCCGGGSCCCHHHHHHHHHHTHH---HHHCGGGSCGGG----------CCCSEEEEESSSSSCHHHHHHHHHHHT-T
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHh---hhhCHHHHhcCC----------CCCCeEEEECcCCCCHHHHHHHHHHHh-C
Confidence 34677888888887777777665321 111122222111 114689999999999999999999998 7
Q ss_pred CCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH-------HHHHHHHHHHHHHhhCCC---CC
Q 002045 730 FPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLEELPS---HL 799 (976)
Q Consensus 730 ~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~-------~~~~~~~~l~~ll~~~~~---~~ 799 (976)
.+++.++++.+.+.+ .|+++..++.+|..+....|+||||||+|.+... ....+...|+..++.... ..
T Consensus 80 ~~~~~i~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 158 (297)
T 3b9p_A 80 ATFLNISAASLTSKY-VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGD 158 (297)
T ss_dssp CEEEEEESTTTSSSS-CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------
T ss_pred CCeEEeeHHHHhhcc-cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 899999999998876 7899999999999999999999999999999743 234566778888887754 36
Q ss_pred CEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCC
Q 002045 800 PILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESG 879 (976)
Q Consensus 800 ~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~sg 879 (976)
.++||+|||.+ +.|++ +.+++++.++++++|+.++|..||+.++.. ......+.++..|+..+. |
T Consensus 159 ~v~vi~~tn~~-~~l~~--~l~~R~~~~i~~~~p~~~~r~~il~~~~~~---------~~~~~~~~~~~~la~~~~---g 223 (297)
T 3b9p_A 159 RIVVLAATNRP-QELDE--AALRRFTKRVYVSLPDEQTRELLLNRLLQK---------QGSPLDTEALRRLAKITD---G 223 (297)
T ss_dssp CEEEEEEESCG-GGBCH--HHHHHCCEEEECCCCCHHHHHHHHHHHHGG---------GSCCSCHHHHHHHHHHTT---T
T ss_pred cEEEEeecCCh-hhCCH--HHHhhCCeEEEeCCcCHHHHHHHHHHHHHh---------cCCCCCHHHHHHHHHHcC---C
Confidence 79999999999 77887 555555578899999999999999988863 111223345666777774 4
Q ss_pred CchhHHHHHH-HHHHHHHHhHh
Q 002045 880 PKASELKAKV-EAEQHALRRLR 900 (976)
Q Consensus 880 ~s~aelk~~~-ea~~~alreLr 900 (976)
+++++|..+| ++...+++++.
T Consensus 224 ~~~~~l~~l~~~a~~~a~r~~~ 245 (297)
T 3b9p_A 224 YSGSDLTALAKDAALEPIRELN 245 (297)
T ss_dssp CCHHHHHHHHHHHTTHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHh
Confidence 5558999998 77788887754
No 52
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.84 E-value=3.4e-21 Score=224.92 Aligned_cols=215 Identities=18% Similarity=0.239 Sum_probs=162.5
Q ss_pred CCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcCCC
Q 002045 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFP 731 (976)
Q Consensus 652 ~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~~ 731 (976)
+.++|.++.|+...+.++.+.+..+ ..+..+..++ +..++|+||+||||||||+||++||.++ +.+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l----~~~~~~~~lg---------~~ip~GvLL~GppGtGKTtLaraIa~~~-~~~ 91 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFL----KNPSRFHEMG---------ARIPKGVLLVGPPGVGKTHLARAVAGEA-RVP 91 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHH----HCGGGTTTTS---------CCCCSEEEEECSSSSSHHHHHHHHHHHT-TCC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHh----hchhhhhhcc---------CCCCceEEEECCCCCCHHHHHHHHHHHh-CCC
Confidence 5677888888877766665543221 1122233332 2235789999999999999999999998 689
Q ss_pred eeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH----------HHHHHHHHHHHHHhhCCCCCCE
Q 002045 732 VHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN----------AHEQLRAVLLTLLEELPSHLPI 801 (976)
Q Consensus 732 ~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~----------~~~~~~~~l~~ll~~~~~~~~v 801 (976)
++.++++++...+ .|.....++.+|+.|+...||||||||||.+... .....++.|+..|++......+
T Consensus 92 ~i~i~g~~~~~~~-~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~v 170 (499)
T 2dhr_A 92 FITASGSDFVEMF-VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI 170 (499)
T ss_dssp EEEEEGGGGTSSC-TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCC
T ss_pred EEEEehhHHHHhh-hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccE
Confidence 9999999888765 7888889999999998888999999999998632 1224455556666666666789
Q ss_pred EEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCC
Q 002045 802 LLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESG 879 (976)
Q Consensus 802 ~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~sg 879 (976)
+||++||+| +.||+ +.++++| .++.|++|+..+|.+||+.++. +.....++++..|+..+++
T Consensus 171 iviAatn~p-~~LD~--aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~----------~~~l~~dv~l~~lA~~t~G--- 234 (499)
T 2dhr_A 171 VVMAATNRP-DILDP--ALLRPGRFDRQIAIDAPDVKGREQILRIHAR----------GKPLAEDVDLALLAKRTPG--- 234 (499)
T ss_dssp EEEECCSCG-GGSCT--TTSSTTSSCCEEECCCCCHHHHHHHHHHTTS----------SSCCCCSSTTHHHHTTSCS---
T ss_pred EEEEecCCh-hhcCc--ccccccccceEEecCCCCHHHHHHHHHHHHh----------cCCCChHHHHHHHHHhcCC---
Confidence 999999999 78998 6666444 7899999999999999987764 2344567788888888854
Q ss_pred CchhHHHHHH-HHHHHHHH
Q 002045 880 PKASELKAKV-EAEQHALR 897 (976)
Q Consensus 880 ~s~aelk~~~-ea~~~alr 897 (976)
+++++|++++ ++...+.+
T Consensus 235 ~~gadL~~lv~~Aa~~A~~ 253 (499)
T 2dhr_A 235 FVGADLENLLNEAALLAAR 253 (499)
T ss_dssp CCHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 4559999999 77666653
No 53
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.84 E-value=6.3e-22 Score=227.03 Aligned_cols=227 Identities=22% Similarity=0.270 Sum_probs=160.8
Q ss_pred ccccccccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHH
Q 002045 644 HRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAI 723 (976)
Q Consensus 644 ~r~~~~~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~ai 723 (976)
.+......+.+.|.++.|....++.+..++.. +...+..+..++ ..+.++||+||||||||++|++|
T Consensus 102 ~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~---~~~~~~~~~~~~----------~~~~~vLL~GppGtGKT~la~ai 168 (389)
T 3vfd_A 102 MNEIVDNGTAVKFDDIAGQDLAKQALQEIVIL---PSLRPELFTGLR----------APARGLLLFGPPGNGKTMLAKAV 168 (389)
T ss_dssp GGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHH---HHHCTTTSCGGG----------CCCSEEEEESSTTSCHHHHHHHH
T ss_pred HhhhhccCCCCChHHhCCHHHHHHHHHHHHHH---hccCHHHhcccC----------CCCceEEEECCCCCCHHHHHHHH
Confidence 33444456778899998888887777766421 111111111111 11468999999999999999999
Q ss_pred HHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH-------HHHHHHHHHHHHHhhCC
Q 002045 724 LHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLEELP 796 (976)
Q Consensus 724 a~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~-------~~~~~~~~l~~ll~~~~ 796 (976)
|+.+ +.+|+.+++..+.+.| .|+++..+..+|..|+...|+||||||||.++.. ....+...|+..|+++.
T Consensus 169 a~~~-~~~~~~v~~~~l~~~~-~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 246 (389)
T 3vfd_A 169 AAES-NATFFNISAASLTSKY-VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQ 246 (389)
T ss_dssp HHHT-TCEEEEECSCCC--------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC
T ss_pred HHhh-cCcEEEeeHHHhhccc-cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccc
Confidence 9998 7899999999999876 7888999999999999999999999999999633 24566677777777665
Q ss_pred C--CCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCC
Q 002045 797 S--HLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVP 874 (976)
Q Consensus 797 ~--~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~ 874 (976)
. ...|+||+|||.+ +.|++ +.++++..+++|++|+.++|..||+.++.. ......+.++..|+..+
T Consensus 247 ~~~~~~v~vI~atn~~-~~l~~--~l~~R~~~~i~i~~p~~~~r~~il~~~~~~---------~~~~l~~~~~~~la~~~ 314 (389)
T 3vfd_A 247 SAGDDRVLVMGATNRP-QELDE--AVLRRFIKRVYVSLPNEETRLLLLKNLLCK---------QGSPLTQKELAQLARMT 314 (389)
T ss_dssp -----CEEEEEEESCG-GGCCH--HHHTTCCEEEECCCCCHHHHHHHHHHHHTT---------SCCCSCHHHHHHHHHHT
T ss_pred ccCCCCEEEEEecCCc-hhcCH--HHHcCcceEEEcCCcCHHHHHHHHHHHHHh---------cCCCCCHHHHHHHHHHc
Confidence 3 5689999999998 78887 555555578889999999999999988762 11222334556677677
Q ss_pred CCCCCCchhHHHHHH-HHHHHHHHhHh
Q 002045 875 TVESGPKASELKAKV-EAEQHALRRLR 900 (976)
Q Consensus 875 ~~~sg~s~aelk~~~-ea~~~alreLr 900 (976)
. |++.++|..++ .+...+++++.
T Consensus 315 ~---g~~~~~l~~L~~~a~~~~~rel~ 338 (389)
T 3vfd_A 315 D---GYSGSDLTALAKDAALGPIRELK 338 (389)
T ss_dssp T---TCCHHHHHHHHHHHTTHHHHTSC
T ss_pred C---CCCHHHHHHHHHHHHHHHHHhhh
Confidence 4 45558998888 77777777744
No 54
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.84 E-value=4.2e-21 Score=207.47 Aligned_cols=216 Identities=17% Similarity=0.243 Sum_probs=146.0
Q ss_pred CCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcCCCe
Q 002045 653 PLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFPV 732 (976)
Q Consensus 653 ~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~~~ 732 (976)
.+.|.++.|+...++.+.+.+..+ ..+..+..+|+ ..+.++||+||||||||++|+++|+++ +.++
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~----~~~~~~~~~g~---------~~~~~vll~G~~GtGKT~la~~la~~~-~~~~ 67 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYL----KSPERFLQLGA---------KVPKGALLLGPPGCGKTLLAKAVATEA-QVPF 67 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHH----HCCC------C---------CCCCEEEEESCTTSSHHHHHHHHHHHH-TCCE
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHH----HCHHHHHHcCC---------CCCceEEEECCCCCCHHHHHHHHHHHh-CCCE
Confidence 456777777776666665543221 12223333332 224689999999999999999999998 7899
Q ss_pred eecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHHH-----------HHHHHHHHHHHHhhCCCCCCE
Q 002045 733 HSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENA-----------HEQLRAVLLTLLEELPSHLPI 801 (976)
Q Consensus 733 ~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~-----------~~~~~~~l~~ll~~~~~~~~v 801 (976)
+.++++.+...+ .|.++..+..+|..|....|+||||||||.+.... ....+..|+..++......++
T Consensus 68 ~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 146 (262)
T 2qz4_A 68 LAMAGAEFVEVI-GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHV 146 (262)
T ss_dssp EEEETTTTSSSS-TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCE
T ss_pred EEechHHHHhhc-cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCE
Confidence 999999988765 78889999999999999899999999999996432 123344455556665556789
Q ss_pred EEEEecCCCcccCcCCCCCCc--CCccEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCC
Q 002045 802 LLLGSSSVPLAEVEGDPSTVF--PLRSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESG 879 (976)
Q Consensus 802 ~vi~ttn~~~~~Ld~~~~~~~--~~r~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~sg 879 (976)
+||+|||.+ +.|++ +.++ ++...++|++|+.++|.+||+.++... ......+..+..|+..+. |
T Consensus 147 ~vi~~tn~~-~~ld~--~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~--------~~~~~~~~~~~~l~~~~~---g 212 (262)
T 2qz4_A 147 IVLASTNRA-DILDG--ALMRPGRLDRHVFIDLPTLQERREIFEQHLKSL--------KLTQSSTFYSQRLAELTP---G 212 (262)
T ss_dssp EEEEEESCG-GGGGS--GGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHT--------TCCBTHHHHHHHHHHTCT---T
T ss_pred EEEecCCCh-hhcCH--HHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhC--------CCCcchhhHHHHHHHHCC---C
Confidence 999999998 77888 5555 333788899999999999999998741 111111112355666664 4
Q ss_pred CchhHHHHHH-HHHHHHHH
Q 002045 880 PKASELKAKV-EAEQHALR 897 (976)
Q Consensus 880 ~s~aelk~~~-ea~~~alr 897 (976)
+++++|..++ ++...+.+
T Consensus 213 ~~~~~l~~l~~~a~~~a~~ 231 (262)
T 2qz4_A 213 FSGADIANICNEAALHAAR 231 (262)
T ss_dssp CCHHHHHHHHHHHHTC---
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 4558898888 55555443
No 55
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.83 E-value=1.6e-20 Score=208.27 Aligned_cols=218 Identities=20% Similarity=0.223 Sum_probs=176.6
Q ss_pred cccChHHHHHHHHHHHHcccCChhHHhhcCCCC---CceEEEEcCCCChHHHHHHHHHHHHhhcCC--cEEEEEecchhH
Q 002045 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITP---PRGVLLCGPPGTGKTLIARALACAASKAGQ--KVSFYMRKGADV 454 (976)
Q Consensus 380 ~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~---~~~vLL~GppGtGKT~laralA~~l~~~~~--~~~~~~~~~~~l 454 (976)
+|+|++.+++.|.+++..+. .+..+..+|+.+ +.++||+||||||||++|+++|+.+...+. ..+++.+++.++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 69999999999999988743 466676666543 457999999999999999999999976543 457889999999
Q ss_pred HhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCcc---
Q 002045 455 LSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVD--- 531 (976)
Q Consensus 455 ~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~--- 531 (976)
...++|.....+..+|..+ .++||||||+|.|+..+.. ......++..|+..|+. ...+++||++||...
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~--~~~~~~~i~~~~~~~~~~ 183 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMEN--NRDDLVVILAGYADRMEN 183 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHH--CTTTCEEEEEECHHHHHH
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhc--CCCCEEEEEeCChHHHHH
Confidence 9999998888888888876 4569999999999865432 22346678889999885 345678888888754
Q ss_pred --ccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHc-------cCCCHHHHHHHHHHHHHH
Q 002045 532 --AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASC-------VGYCGADLKALCTEAAIR 602 (976)
Q Consensus 532 --~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t-------~G~s~~dI~~l~~~A~~~ 602 (976)
.++++|++ ||+..|.|++|+.+++.+|++.++...+..++.+.+..++... ..-+++++.+++..|+..
T Consensus 184 ~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~ 261 (309)
T 3syl_A 184 FFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLR 261 (309)
T ss_dssp HHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHH
T ss_pred HHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHH
Confidence 25789998 9999999999999999999999999988888998888888763 223589999999999887
Q ss_pred HHHhh
Q 002045 603 AFREK 607 (976)
Q Consensus 603 a~~~~ 607 (976)
+..+.
T Consensus 262 ~~~r~ 266 (309)
T 3syl_A 262 QANRL 266 (309)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 56
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.82 E-value=1.1e-20 Score=216.06 Aligned_cols=169 Identities=20% Similarity=0.226 Sum_probs=82.2
Q ss_pred cccChHHHHHHHHHHHHcccCChhHHhhcCC-CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHh-h
Q 002045 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHI-TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS-K 457 (976)
Q Consensus 380 ~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~-~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~-~ 457 (976)
+|+|++++|+.|..++..|..++.++..+.. .++.++||+||||||||++|+++|..++ .+|+.++++.+.. .
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~-----~~~~~v~~~~~~~~g 90 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN-----APFIKVEATKFTEVG 90 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEGGGGC---
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC-----CCceeecchhhcccc
Confidence 5899999999999999877666665554443 2578999999999999999999999985 7889999988887 5
Q ss_pred hHhH-HHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEec-CCCccccch
Q 002045 458 WVGE-AERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGA-TNRVDAIDG 535 (976)
Q Consensus 458 ~~g~-~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~a-tn~~~~ld~ 535 (976)
|+|. .+..++.+|..+... +++||++.+.. ........+++.+|+..|+++.....+ +++ ||+++.|++
T Consensus 91 ~vG~d~e~~lr~lf~~a~~~----~~~De~d~~~~---~~~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~ 161 (444)
T 1g41_A 91 YVGKEVDSIIRDLTDSAMKL----VRQQEIAKNRA---RAEDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRK 161 (444)
T ss_dssp -CCCCTHHHHHHHHHHHHHH----HHHHHHHSCC----------------------------------------------
T ss_pred eeeccHHHHHHHHHHHHHhc----chhhhhhhhhc---cchhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHH
Confidence 8885 788999999988764 45899887753 233445678999999999998766554 444 999999999
Q ss_pred hhcCCCCCccccCCCCCCHH-HHHHHHH
Q 002045 536 ALRRPGRFDREFNFPLPGCE-ARAEILD 562 (976)
Q Consensus 536 aL~r~gRf~~~i~~~~P~~~-er~~Il~ 562 (976)
+|+|+|||++.|+++.|+.. .+.+|+.
T Consensus 162 aL~rggr~D~~i~i~lP~~~~~~~ei~~ 189 (444)
T 1g41_A 162 KLREGQLDDKEIEIDVSAGVSMGVEIMA 189 (444)
T ss_dssp ----------------------------
T ss_pred HHHcCCCcceEEEEcCCCCccchhhhhc
Confidence 99999999999999999976 6677664
No 57
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.82 E-value=5.1e-21 Score=210.68 Aligned_cols=162 Identities=14% Similarity=0.159 Sum_probs=123.3
Q ss_pred CCceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHH----HhcCCceEeccccchhHH
Q 002045 703 RPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEA----RRTTPSILYIPQFNLWWE 778 (976)
Q Consensus 703 ~~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a----~~~~p~ilfiDEid~l~~ 778 (976)
|.++||+||||||||++|++||+.+ +.+|+.++++++.++| +|+++..++.+|..| +...||||||||||++++
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l-~~~~i~v~~~~l~~~~-~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM-GINPIMMSAGELESGN-AGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG 113 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH-TCCCEEEEHHHHHCC----HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-CCCEEEEeHHHhhhcc-CchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcC
Confidence 5689999999999999999999999 8999999999999886 799999999999998 577899999999999986
Q ss_pred HH---------HHHHHHHHHHHHhhCC-----------CCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHH
Q 002045 779 NA---------HEQLRAVLLTLLEELP-----------SHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDR 838 (976)
Q Consensus 779 ~~---------~~~~~~~l~~ll~~~~-----------~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er 838 (976)
.. ...+.+.|+++|+.+. ...+|+||+|||.+ +.|++ +.++++|.-..+..|+.++|
T Consensus 114 ~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~-~~ld~--al~R~~R~d~~i~~P~~~~r 190 (293)
T 3t15_A 114 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDF-STLYA--PLIRDGRMEKFYWAPTREDR 190 (293)
T ss_dssp ----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSC-CC--C--HHHHHHHEEEEEECCCHHHH
T ss_pred CCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCc-ccCCH--HHhCCCCCceeEeCcCHHHH
Confidence 32 2256788899987443 45689999999999 88998 77776663333447899999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCchh
Q 002045 839 SLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPKAS 883 (976)
Q Consensus 839 ~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~sg~s~a 883 (976)
.+||+.++. ...+++..|+..+.++++....
T Consensus 191 ~~Il~~~~~--------------~~~~~~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 191 IGVCTGIFR--------------TDNVPAEDVVKIVDNFPGQSID 221 (293)
T ss_dssp HHHHHHHHG--------------GGCCCHHHHHHHHHHSCSCCHH
T ss_pred HHHHHHhcc--------------CCCCCHHHHHHHhCCCCcccHH
Confidence 999997775 1245667777777777775443
No 58
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.82 E-value=6.5e-20 Score=197.60 Aligned_cols=218 Identities=18% Similarity=0.255 Sum_probs=159.8
Q ss_pred ccCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcC
Q 002045 650 HSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEK 729 (976)
Q Consensus 650 ~~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~ 729 (976)
..+.++|.++.++.....++...+..+ ..+..+..+++ ..++|++|+||||||||+++++|+..+ +
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~~----~~~~~~~~~~~---------~~~~g~ll~G~~G~GKTtl~~~i~~~~-~ 74 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEFL----KNPSRFHEMGA---------RIPKGVLLVGPPGVGKTHLARAVAGEA-R 74 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHHH----HCHHHHHHTTC---------CCCSEEEEECCTTSSHHHHHHHHHHHT-T
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHH----HCHHHHHHcCC---------CCCCeEEEECCCCCCHHHHHHHHHHHh-C
Confidence 345677888877766655554432211 12334444432 224689999999999999999999998 5
Q ss_pred CCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH----------HHHHHHHHHHHHHhhCCCCC
Q 002045 730 FPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN----------AHEQLRAVLLTLLEELPSHL 799 (976)
Q Consensus 730 ~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~----------~~~~~~~~l~~ll~~~~~~~ 799 (976)
.+++.++...+...+ .|.....+..+|+.+....|+++||||||.+... ......+.++..|++.....
T Consensus 75 ~~~i~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~ 153 (254)
T 1ixz_A 75 VPFITASGSDFVEMF-VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 153 (254)
T ss_dssp CCEEEEEHHHHHHSC-TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTC
T ss_pred CCEEEeeHHHHHHHH-hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCC
Confidence 889999887776654 6777888999999998888999999999998632 11234555666666666677
Q ss_pred CEEEEEecCCCcccCcCCCCCCcCCc--cEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCC
Q 002045 800 PILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVE 877 (976)
Q Consensus 800 ~v~vi~ttn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~ 877 (976)
.++++++||.| +.||+ +.++++| .+++|++|+.++|.+||+.++. ......++++..|+..+.
T Consensus 154 ~~i~~a~t~~p-~~ld~--~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~----------~~~~~~~~~~~~la~~~~-- 218 (254)
T 1ixz_A 154 AIVVMAATNRP-DILDP--ALLRPGRFDRQIAIDAPDVKGREQILRIHAR----------GKPLAEDVDLALLAKRTP-- 218 (254)
T ss_dssp CEEEEEEESCG-GGSCG--GGGSTTSSCEEEECCSCCHHHHHHHHHHHHT----------TSCBCTTCCHHHHHHTCT--
T ss_pred CEEEEEccCCc-hhCCH--HHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc----------CCCCCcccCHHHHHHHcC--
Confidence 89999999999 88998 5555433 7889999999999999997765 233345677778888774
Q ss_pred CCCchhHHHHHH-HHHHHHHHh
Q 002045 878 SGPKASELKAKV-EAEQHALRR 898 (976)
Q Consensus 878 sg~s~aelk~~~-ea~~~alre 898 (976)
|+++++|+.++ ++...+.++
T Consensus 219 -G~~~~dl~~~~~~a~~~a~~~ 239 (254)
T 1ixz_A 219 -GFVGADLENLLNEAALLAARE 239 (254)
T ss_dssp -TCCHHHHHHHHHHHHHHHHHT
T ss_pred -CCCHHHHHHHHHHHHHHHHHh
Confidence 55559999998 666666543
No 59
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.81 E-value=6.7e-21 Score=206.90 Aligned_cols=213 Identities=20% Similarity=0.272 Sum_probs=151.8
Q ss_pred CCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcCCC
Q 002045 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFP 731 (976)
Q Consensus 652 ~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~~ 731 (976)
+...|.++.|....++.+...+.. +..+..+..++.. .+.++||+||||||||++|+++|..+ +.+
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~~----~~~~~~~~~~~~~---------~~~~vll~G~~GtGKT~la~~la~~~-~~~ 71 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVDF----LKYPERYANLGAK---------IPKGVLLVGPPGTGKTLLAKAVAGEA-HVP 71 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHHH----HHCHHHHHHHSCC---------CCSCCCCBCSSCSSHHHHHHHHHHHH-TCC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH----HHChHHHHHCCCC---------CCceEEEECCCCCcHHHHHHHHHHHh-CCC
Confidence 455677776665555555444322 2234556555532 24679999999999999999999998 789
Q ss_pred eeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHHHHH-----------HHHHHHHHHHhhCCC-CC
Q 002045 732 VHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHE-----------QLRAVLLTLLEELPS-HL 799 (976)
Q Consensus 732 ~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~~~-----------~~~~~l~~ll~~~~~-~~ 799 (976)
++.+++..+...+ .|.++..++.+|..|....|+||||||+|.+...... .++..|+..|+.... ..
T Consensus 72 ~~~v~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (268)
T 2r62_A 72 FFSMGGSSFIEMF-VGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENA 150 (268)
T ss_dssp CCCCCSCTTTTSC-SSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCS
T ss_pred EEEechHHHHHhh-cchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCC
Confidence 9999999888765 6777777888999999989999999999999753211 122333344443332 34
Q ss_pred CEEEEEecCCCcccCcCCCCCCcCC--ccEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCC
Q 002045 800 PILLLGSSSVPLAEVEGDPSTVFPL--RSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVE 877 (976)
Q Consensus 800 ~v~vi~ttn~~~~~Ld~~~~~~~~~--r~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~ 877 (976)
+++||+|||.+ +.|++ +.++++ ..+++|++|+.++|.+||+.++. ......+.++..|+..+.++
T Consensus 151 ~v~vi~ttn~~-~~ld~--~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~----------~~~~~~~~~~~~la~~~~g~ 217 (268)
T 2r62_A 151 PVIVLAATNRP-EILDP--ALMRPGRFDRQVLVDKPDFNGRVEILKVHIK----------GVKLANDVNLQEVAKLTAGL 217 (268)
T ss_dssp CCEEEECBSCC-TTSCG--GGGSSSSSCCCCBCCCCCTTTHHHHHHHHTS----------SSCCCSSCCTTTTTSSSCSS
T ss_pred CEEEEEecCCc-hhcCH--hHcCCCCCCeEEEecCcCHHHHHHHHHHHHh----------cCCCCCccCHHHHHHHcCCC
Confidence 69999999999 77887 555533 36788999999999999988775 23334567889999888555
Q ss_pred CCCchhHHHHHH-HHHHHH
Q 002045 878 SGPKASELKAKV-EAEQHA 895 (976)
Q Consensus 878 sg~s~aelk~~~-ea~~~a 895 (976)
+ +++|..++ .+...+
T Consensus 218 ~---g~dl~~l~~~a~~~a 233 (268)
T 2r62_A 218 A---GADLANIINEAALLA 233 (268)
T ss_dssp C---HHHHHHHHHHHHHTT
T ss_pred C---HHHHHHHHHHHHHHH
Confidence 4 48999888 454444
No 60
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.78 E-value=2.3e-19 Score=171.69 Aligned_cols=86 Identities=37% Similarity=0.729 Sum_probs=83.1
Q ss_pred HHHHHHHhHhhhhhhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Q 002045 891 AEQHALRRLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNA 970 (976)
Q Consensus 891 a~~~alreLr~~L~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na 970 (976)
..++.+++|+.+|+.++..+..++.+++|..||++..+|+|+++|++||||+||++||+++.|.|+++|.+||.|||+||
T Consensus 3 ~ee~~l~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na 82 (130)
T 3dai_A 3 QEEDTFRELRIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNA 82 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCccHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCC
Q 002045 971 KVSTCA 976 (976)
Q Consensus 971 ~~yn~~ 976 (976)
++||++
T Consensus 83 ~~yN~~ 88 (130)
T 3dai_A 83 LEYNPD 88 (130)
T ss_dssp HHHCCS
T ss_pred HHHCCC
Confidence 999985
No 61
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.78 E-value=5.5e-19 Score=193.01 Aligned_cols=216 Identities=18% Similarity=0.249 Sum_probs=155.2
Q ss_pred cCCCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcCC
Q 002045 651 SRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKF 730 (976)
Q Consensus 651 ~~~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~ 730 (976)
.+.+.|.++.+.+....++...+..+ .....+..+++ ..++|++|+||||||||+|+++|+..+ ..
T Consensus 34 ~~~~~~~~i~g~~~~~~~l~~l~~~~----~~~~~l~~~~~---------~~~~gvll~Gp~GtGKTtl~~~i~~~~-~~ 99 (278)
T 1iy2_A 34 APKVTFKDVAGAEEAKEELKEIVEFL----KNPSRFHEMGA---------RIPKGVLLVGPPGVGKTHLARAVAGEA-RV 99 (278)
T ss_dssp CCCCCGGGSSSCHHHHHHHHHHHHHH----HCHHHHHHTTC---------CCCCEEEEECCTTSSHHHHHHHHHHHT-TC
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHH----HCHHHHHHcCC---------CCCCeEEEECCCcChHHHHHHHHHHHc-CC
Confidence 35677888877776666555442221 12334444432 224679999999999999999999998 58
Q ss_pred CeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH----------HHHHHHHHHHHHHhhCCCCCC
Q 002045 731 PVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN----------AHEQLRAVLLTLLEELPSHLP 800 (976)
Q Consensus 731 ~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~----------~~~~~~~~l~~ll~~~~~~~~ 800 (976)
+++.++...+...+ .+.....+..+|+.+....|+++|||||+.+... .....+..++..|++......
T Consensus 100 ~~i~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~ 178 (278)
T 1iy2_A 100 PFITASGSDFVEMF-VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 178 (278)
T ss_dssp CEEEEEHHHHHHST-TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCC
T ss_pred CEEEecHHHHHHHH-hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCC
Confidence 89999887776554 5777788999999998888999999999988632 112334444455555555667
Q ss_pred EEEEEecCCCcccCcCCCCCCcCC--ccEEEecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 002045 801 ILLLGSSSVPLAEVEGDPSTVFPL--RSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVES 878 (976)
Q Consensus 801 v~vi~ttn~~~~~Ld~~~~~~~~~--r~~i~v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~s 878 (976)
++++++||.| +.||+ +.++++ ..+++|++|+.++|.+||+.++. ......++++..|+..+ .
T Consensus 179 ~i~~a~t~~p-~~ld~--~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~----------~~~~~~~~~~~~la~~~---~ 242 (278)
T 1iy2_A 179 IVVMAATNRP-DILDP--ALLRPGRFDRQIAIDAPDVKGREQILRIHAR----------GKPLAEDVDLALLAKRT---P 242 (278)
T ss_dssp EEEEEEESCT-TSSCH--HHHSTTSSCCEEECCCCCHHHHHHHHHHHHT----------TSCBCTTCCHHHHHHTC---T
T ss_pred EEEEEecCCc-hhCCH--hHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc----------cCCCCcccCHHHHHHHc---C
Confidence 9999999999 88998 444432 27899999999999999997765 23334556777788777 4
Q ss_pred CCchhHHHHHH-HHHHHHHH
Q 002045 879 GPKASELKAKV-EAEQHALR 897 (976)
Q Consensus 879 g~s~aelk~~~-ea~~~alr 897 (976)
|+++++|+.++ ++...+.+
T Consensus 243 G~~~~dl~~l~~~a~~~a~~ 262 (278)
T 1iy2_A 243 GFVGADLENLLNEAALLAAR 262 (278)
T ss_dssp TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 55559999988 56665554
No 62
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.77 E-value=5.6e-18 Score=192.50 Aligned_cols=223 Identities=19% Similarity=0.166 Sum_probs=162.7
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
|..+|++|+|++.+++.+..++.. ...+..++.++||+||||||||++|+++|+.+.. ..+|+.+++..
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~--------~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~---~~~~~~~~~~~ 107 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEM--------IREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP---DTPFTAIAGSE 107 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHH--------HHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS---SCCEEEEEGGG
T ss_pred cCcchhhccChHHHHHHHHHHHHH--------HHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc---cCCcccccchh
Confidence 556699999999999887665543 1123345689999999999999999999999863 24666666655
Q ss_pred HHhhhH-------------------------------------------------hHHHHHHHHHHHHHHh-----c---
Q 002045 454 VLSKWV-------------------------------------------------GEAERQLKLLFEEAQR-----N--- 476 (976)
Q Consensus 454 l~~~~~-------------------------------------------------g~~~~~l~~~f~~a~~-----~--- 476 (976)
+...++ |.....++..+..+.. +
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~ 187 (368)
T 3uk6_A 108 IFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAE 187 (368)
T ss_dssp GSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC--
T ss_pred hhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhcccc
Confidence 332221 2222334444443322 1
Q ss_pred -CCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecC-----------CCccccchhhcCCCCCc
Q 002045 477 -QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT-----------NRVDAIDGALRRPGRFD 544 (976)
Q Consensus 477 -~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~at-----------n~~~~ld~aL~r~gRf~ 544 (976)
.|+||||||+|.|. ...+..|+..++.. ...++++++. |.+..++++|++ ||.
T Consensus 188 ~~~~vl~IDEi~~l~-----------~~~~~~L~~~le~~--~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~ 252 (368)
T 3uk6_A 188 IIPGVLFIDEVHMLD-----------IESFSFLNRALESD--MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLL 252 (368)
T ss_dssp -CBCEEEEESGGGSB-----------HHHHHHHHHHTTCT--TCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEE
T ss_pred ccCceEEEhhccccC-----------hHHHHHHHHHhhCc--CCCeeeeecccceeeeeccCCCCcccCCHHHHh--hcc
Confidence 16799999999884 34666778877743 2345554443 346779999999 886
Q ss_pred cccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCccccCcccccccccc
Q 002045 545 REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDS 624 (976)
Q Consensus 545 ~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~ 624 (976)
. +.|++|+.+++.+|++..+...+..++.+.++.++..+.+.+++++.++|..|+..|..+..
T Consensus 253 ~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~---------------- 315 (368)
T 3uk6_A 253 I-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKG---------------- 315 (368)
T ss_dssp E-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTC----------------
T ss_pred E-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC----------------
Confidence 5 89999999999999999998888889999999999999867899999999999988876532
Q ss_pred eeEeehhhhhccccc
Q 002045 625 VTVEKYHFIEAMSTI 639 (976)
Q Consensus 625 ~~it~~df~~al~~i 639 (976)
..|+.+++..++..+
T Consensus 316 ~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 316 TEVQVDDIKRVYSLF 330 (368)
T ss_dssp SSBCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHh
Confidence 237778888777653
No 63
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.75 E-value=1.2e-18 Score=162.48 Aligned_cols=78 Identities=27% Similarity=0.458 Sum_probs=72.5
Q ss_pred HhhhhhhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 899 LRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 899 Lr~~L~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
|+..+..++..+..++.+++|..||++..+|+|+++|++||||+||++||++|.|.|+.+|.+||+|||+||++||++
T Consensus 8 l~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 85 (112)
T 3d7c_A 8 LYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPP 85 (112)
T ss_dssp HHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHcCCCchhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHCCC
Confidence 445556777888888999999999999999999999999999999999999999999999999999999999999985
No 64
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=162.76 Aligned_cols=78 Identities=27% Similarity=0.485 Sum_probs=72.3
Q ss_pred HhhhhhhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 899 LRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 899 Lr~~L~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
++..+..++..+..++.+++|..||++..+|+|+++|++||||+||++||++|.|.|+++|.+||+|||+||++||+|
T Consensus 9 l~~~l~~il~~L~~~~~~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~ 86 (117)
T 2i7k_A 9 LQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKP 86 (117)
T ss_dssp HHHHHHHHHHHHHTSSGGGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHHHHhCcccHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 455566777777778889999999999999999999999999999999999999999999999999999999999986
No 65
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-18 Score=163.65 Aligned_cols=76 Identities=26% Similarity=0.434 Sum_probs=70.5
Q ss_pred hhhhhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 901 MCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 901 ~~L~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
..++.++..+..++.+++|..||++..+|+|+++|++||||+||++||+++.|.++++|.+||.|||+||++||++
T Consensus 10 ~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 85 (121)
T 2d9e_A 10 ILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAK 85 (121)
T ss_dssp HHHHHHHHHHHHHCSSCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHcCCccHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 3455677777778889999999999999999999999999999999999999999999999999999999999985
No 66
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.73 E-value=2.9e-18 Score=163.19 Aligned_cols=78 Identities=27% Similarity=0.445 Sum_probs=70.8
Q ss_pred HhhhhhhhhccccccccccccccCCCCC--CccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 899 LRMCLRDVCNRMLYDKRFSAFHYPVTDE--DAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 899 Lr~~L~~il~~l~~~~~~~~F~~PV~~~--~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
|+.+++.++..+..++.+++|..||++. .+|+|+++|++||||+||++||++++|.++++|.+||.|||+||++||++
T Consensus 22 l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 101 (127)
T 2oss_A 22 LQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKP 101 (127)
T ss_dssp HHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 3444566777777888999999999975 89999999999999999999999999999999999999999999999975
No 67
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.73 E-value=3.2e-18 Score=168.19 Aligned_cols=79 Identities=25% Similarity=0.422 Sum_probs=72.5
Q ss_pred hHhhhhhhhhccccccccccccccCCCCC--CccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcC
Q 002045 898 RLRMCLRDVCNRMLYDKRFSAFHYPVTDE--DAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTC 975 (976)
Q Consensus 898 eLr~~L~~il~~l~~~~~~~~F~~PV~~~--~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~ 975 (976)
+|+.+++.++..+..++.+++|..||++. ++|+|+++|++||||+||++||++++|.++++|++||+|||.||++||+
T Consensus 32 ~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~YN~ 111 (154)
T 4alg_A 32 QLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNK 111 (154)
T ss_dssp HHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34555667777888889999999999997 7999999999999999999999999999999999999999999999998
Q ss_pred C
Q 002045 976 A 976 (976)
Q Consensus 976 ~ 976 (976)
+
T Consensus 112 ~ 112 (154)
T 4alg_A 112 P 112 (154)
T ss_dssp T
T ss_pred C
Confidence 5
No 68
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.73 E-value=4.1e-18 Score=161.25 Aligned_cols=78 Identities=27% Similarity=0.482 Sum_probs=72.9
Q ss_pred HhhhhhhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 899 LRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 899 Lr~~L~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
++.++..++..+..++.+++|..||++..+|+|+++|++||||+||++||+++.|.++++|.+||.|||+||.+||++
T Consensus 14 ~~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 91 (123)
T 3hme_A 14 IQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRP 91 (123)
T ss_dssp HHHHHHHHHHHHHTTCTTCSSSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHhCCccHhhcCCCChhhccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 455667778888889999999999999999999999999999999999999999999999999999999999999986
No 69
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.72 E-value=3.2e-18 Score=160.73 Aligned_cols=78 Identities=26% Similarity=0.412 Sum_probs=71.9
Q ss_pred HhhhhhhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 899 LRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 899 Lr~~L~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
+...|..++..+..++.+++|..||++..+|+|+++|++||||+||++||+++.|.|+++|.+||.|||+||++||++
T Consensus 17 ~~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 94 (116)
T 3nxb_A 17 DFTAMYKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGE 94 (116)
T ss_dssp HHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCCcHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 344456677788888899999999999999999999999999999999999999999999999999999999999985
No 70
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.72 E-value=1.3e-17 Score=184.36 Aligned_cols=243 Identities=18% Similarity=0.246 Sum_probs=167.0
Q ss_pred cccChHHHHHHHHHHHHcccCChhHHhhc-CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHh-h
Q 002045 380 DIGGLSEYIDALKEMVFFPLLYPDFFASY-HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS-K 457 (976)
Q Consensus 380 ~i~G~~~~k~~l~~~v~~pl~~~~~~~~~-~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~-~ 457 (976)
.|+|++.+++.|..++..++....+...+ +...+.++||+||||||||++|+++|+.++ .+++.++++.+.. .
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~-----~~~~~i~~~~~~~~~ 90 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN-----APFIKVEATKFTEVG 90 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT-----CCEEEEEGGGGSSCC
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEcchhcccCC
Confidence 48999999999998876532222111111 013567999999999999999999999985 5678888887765 4
Q ss_pred hHhHH-HHHHHHHHHHH-----HhcCCcEEEEccccccCCCCCChh-hhhHHHHHHHHHHHhhccC--------CCCcEE
Q 002045 458 WVGEA-ERQLKLLFEEA-----QRNQPSIIFFDEIDGLAPVRSSKQ-EQIHNSIVSTLLALMDGLD--------SRGQVV 522 (976)
Q Consensus 458 ~~g~~-~~~l~~~f~~a-----~~~~p~VL~iDEid~L~~~r~~~~-~~~~~~~~~~Ll~~ld~~~--------~~~~vi 522 (976)
++|.. ...+..++..+ ....++||||||+|.+.+...... ......++..|+..|++.. ....++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 170 (310)
T 1ofh_A 91 YVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHIL 170 (310)
T ss_dssp SGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCE
T ss_pred ccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEE
Confidence 55432 23455555422 112357999999999987653222 2223446778888888531 234677
Q ss_pred EEec----CCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHH----H-------H--hcCCCCCCHHHHHHHHHHcc
Q 002045 523 LIGA----TNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDI----H-------T--RKWKQPPSRELKSELAASCV 585 (976)
Q Consensus 523 vI~a----tn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~----~-------l--~~~~~~~~~~~l~~lA~~t~ 585 (976)
||++ ++.+..++++|.+ ||...|.|++|+.+++.+|++. + + ....+.++++.++.|+..+.
T Consensus 171 ~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~ 248 (310)
T 1ofh_A 171 FIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAF 248 (310)
T ss_dssp EEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHH
T ss_pred EEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhh
Confidence 8887 5577889999998 9998899999999999999983 1 1 12223578888888988773
Q ss_pred -------CCCHHHHHHHHHHHHHHHHHhhCCccccCcccccccccceeEeehhhhhccccc
Q 002045 586 -------GYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (976)
Q Consensus 586 -------G~s~~dI~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~i 639 (976)
+.+.+.+.++|..+...+...... .......|+.+++..++...
T Consensus 249 ~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~----------~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 249 RVNEKTENIGARRLHTVMERLMDKISFSASD----------MNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HHHHHSCCCTTHHHHHHHHHHSHHHHHHGGG----------CTTCEEEECHHHHHHHTCSS
T ss_pred hhcccccccCcHHHHHHHHHHHHhhhcCCcc----------ccCCEEEEeeHHHHHHHHhh
Confidence 467889999998877655433211 01123458888888887654
No 71
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.72 E-value=4.6e-18 Score=160.43 Aligned_cols=73 Identities=25% Similarity=0.499 Sum_probs=68.6
Q ss_pred hhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 904 RDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 904 ~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
..++..+..++.+++|..||++..+|+|+++|++||||+||++||+++.|.|+.+|.+||.|||+||++||++
T Consensus 19 ~~il~~l~~~~~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 91 (121)
T 1e6i_A 19 QNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGE 91 (121)
T ss_dssp HHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHcCCCchhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4566677778899999999999999999999999999999999999999999999999999999999999985
No 72
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=6.8e-18 Score=159.89 Aligned_cols=64 Identities=20% Similarity=0.370 Sum_probs=61.5
Q ss_pred cccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 913 DKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 913 ~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
+..+++|..||+...+|+|+++|++||||+||++||++++|.++++|.+||+|||+||++||++
T Consensus 34 ~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 97 (123)
T 2dat_A 34 RQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLE 97 (123)
T ss_dssp CBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHHHHHHHHSCT
T ss_pred CeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4568999999999999999999999999999999999999999999999999999999999985
No 73
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.72 E-value=6.7e-18 Score=160.05 Aligned_cols=78 Identities=31% Similarity=0.503 Sum_probs=72.3
Q ss_pred HhhhhhhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 899 LRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 899 Lr~~L~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
|+..+..++..+..++.+++|..||++..+|+|+.+|++||||+||++||+++.|.++++|.+||.|||.||+.||++
T Consensus 11 ~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 88 (123)
T 3q2e_A 11 WKKQCKELVNLIFQCEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYTPN 88 (123)
T ss_dssp HHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhCCCcHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 455556777888888899999999999999999999999999999999999999999999999999999999999974
No 74
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.72 E-value=7.1e-18 Score=158.56 Aligned_cols=73 Identities=26% Similarity=0.445 Sum_probs=68.8
Q ss_pred hhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 904 RDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 904 ~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
..++..+..++.+++|..||++..+|+|+++|++||||+||++||+++.|.++++|.+||.|||+||+.||++
T Consensus 19 ~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 91 (117)
T 3g0l_A 19 SMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNED 91 (117)
T ss_dssp HHHHHHHHTSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHhCCCchhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4566777778889999999999999999999999999999999999999999999999999999999999986
No 75
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.71 E-value=7.2e-18 Score=162.66 Aligned_cols=79 Identities=29% Similarity=0.486 Sum_probs=74.6
Q ss_pred hHhhhhhhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 898 RLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 898 eLr~~L~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
.++.+++.++..+..++.+++|..||++..+|+|+.+|++||||+||++||+++.|.++++|.+||.|||+||++||++
T Consensus 13 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 91 (135)
T 3rcw_A 13 PLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNAR 91 (135)
T ss_dssp HHHHHHHHHHHHHHHTCTTCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHhCCcchhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 3666778888888889999999999999999999999999999999999999999999999999999999999999975
No 76
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.71 E-value=8.6e-18 Score=162.09 Aligned_cols=78 Identities=29% Similarity=0.470 Sum_probs=70.7
Q ss_pred HhhhhhhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 899 LRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 899 Lr~~L~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
|+..+..++..+..++.+++|..||++..+|+|+++|++||||+||++||+++.|.|+++|.+||.|||.||++||++
T Consensus 22 l~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 99 (135)
T 3mb3_A 22 WKKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTPS 99 (135)
T ss_dssp HHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhCCCChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 333445666777778889999999999999999999999999999999999999999999999999999999999975
No 77
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.71 E-value=1.2e-17 Score=198.93 Aligned_cols=232 Identities=19% Similarity=0.221 Sum_probs=149.4
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhH
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l 454 (976)
.....+++|+++++..+.+.+...... ..+ ++.+++|+||||||||++|+++|..+. .++..+++..+
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l~~~~------~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~i~~~~~ 144 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAVQKLT------KSL-KGPILCLAGPPGVGKTSLAKSIAKSLG-----RKFVRISLGGV 144 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHHHHHS------SSC-CSCEEEEESSSSSSHHHHHHHHHHHHT-----CEEEEECCCC-
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhc------ccC-CCCEEEEECCCCCCHHHHHHHHHHhcC-----CCeEEEEeccc
Confidence 344567999999999998876542111 111 566899999999999999999999985 45666665443
Q ss_pred Hh---------hhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCC--------
Q 002045 455 LS---------KWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS-------- 517 (976)
Q Consensus 455 ~~---------~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~-------- 517 (976)
.. .|+|.....+...|..+....| ||||||||.+.+... ...+..|+..|+....
T Consensus 145 ~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~-------~~~~~~LL~~ld~~~~~~~~~~~~ 216 (543)
T 3m6a_A 145 RDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR-------GDPSSAMLEVLDPEQNSSFSDHYI 216 (543)
T ss_dssp -------------------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSS
T ss_pred chhhhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc-------cCHHHHHHHHHhhhhcceeecccC
Confidence 22 5666666667777777655556 999999999975432 1245667777764321
Q ss_pred -----CCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhc-----C-----CCCCCHHHHHHHHH
Q 002045 518 -----RGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK-----W-----KQPPSRELKSELAA 582 (976)
Q Consensus 518 -----~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~-----~-----~~~~~~~~l~~lA~ 582 (976)
..+++||+|||.++.++++|++ || .+|.|+.|+.+++..|++.++.. . .+.++.+.+..++.
T Consensus 217 ~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~-~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~ 293 (543)
T 3m6a_A 217 EETFDLSKVLFIATANNLATIPGPLRD--RM-EIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIR 293 (543)
T ss_dssp CCCCBCSSCEEEEECSSTTTSCHHHHH--HE-EEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHH
T ss_pred CeeecccceEEEeccCccccCCHHHHh--hc-ceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHH
Confidence 1568999999999999999999 99 47999999999999999987622 2 33557788888777
Q ss_pred HccC-CCHHHHHHHHHHHHHHHHHhhCCccccCcccccccccceeEeehhhhhccccc
Q 002045 583 SCVG-YCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (976)
Q Consensus 583 ~t~G-~s~~dI~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~i 639 (976)
...+ ...++|++.+..++..+...... .......|+.+++..++...
T Consensus 294 ~~~~~~~vR~L~~~i~~~~~~aa~~~~~----------~~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 294 YYTREAGVRSLERQLAAICRKAAKAIVA----------EERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp HHCCCSSSHHHHHHHHHHHHHHHHHHHT----------TCCSCCEECTTTTHHHHCSC
T ss_pred hCChhhchhHHHHHHHHHHHHHHHHHHh----------cCCcceecCHHHHHHHhCCc
Confidence 5554 34455555544444433332211 01123457777777666543
No 78
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.71 E-value=7.4e-18 Score=158.95 Aligned_cols=78 Identities=31% Similarity=0.500 Sum_probs=68.6
Q ss_pred Hhhhhhhhhccccc-cccccccccCCCCC--CccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcC
Q 002045 899 LRMCLRDVCNRMLY-DKRFSAFHYPVTDE--DAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTC 975 (976)
Q Consensus 899 Lr~~L~~il~~l~~-~~~~~~F~~PV~~~--~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~ 975 (976)
++..|..++..+.. ++.+++|..||++. ++|+|+++|++||||+||++||+++.|.|+++|.+||.|||+||++||+
T Consensus 12 l~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 91 (119)
T 3p1f_A 12 LRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNR 91 (119)
T ss_dssp HHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 33444555555544 66889999999997 7999999999999999999999999999999999999999999999997
Q ss_pred C
Q 002045 976 A 976 (976)
Q Consensus 976 ~ 976 (976)
+
T Consensus 92 ~ 92 (119)
T 3p1f_A 92 K 92 (119)
T ss_dssp T
T ss_pred C
Confidence 5
No 79
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.70 E-value=4.8e-17 Score=184.66 Aligned_cols=241 Identities=19% Similarity=0.227 Sum_probs=164.3
Q ss_pred ccChHHHHHHHHHHHHcccCChhHHh--hcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHh-h
Q 002045 381 IGGLSEYIDALKEMVFFPLLYPDFFA--SYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS-K 457 (976)
Q Consensus 381 i~G~~~~k~~l~~~v~~pl~~~~~~~--~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~-~ 457 (976)
|+|++.+++.|..++..+........ .....++.+|||+||||||||++|++||+.++ .+|+.++++.+.. .
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~-----~~~~~~~~~~l~~~~ 91 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD-----VPFTMADATTLTEAG 91 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHTTCH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC-----CCEEEechHHhcccc
Confidence 79999999999998854221111000 01113578999999999999999999999984 6789999998875 4
Q ss_pred hHhHH-HHHHHHHHHHH----HhcCCcEEEEccccccCCCCCChh---hhhHHHHHHHHHHHhhccCC-----------C
Q 002045 458 WVGEA-ERQLKLLFEEA----QRNQPSIIFFDEIDGLAPVRSSKQ---EQIHNSIVSTLLALMDGLDS-----------R 518 (976)
Q Consensus 458 ~~g~~-~~~l~~~f~~a----~~~~p~VL~iDEid~L~~~r~~~~---~~~~~~~~~~Ll~~ld~~~~-----------~ 518 (976)
|+|.. ...+..+|..+ ....++||||||||.+.+.+.... ......++..|+..|++... .
T Consensus 92 ~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~ 171 (363)
T 3hws_A 92 YVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQ 171 (363)
T ss_dssp HHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC--------------
T ss_pred cccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCC
Confidence 78875 55667777665 334567999999999987754432 22234589999999984310 0
Q ss_pred CcEEEEecCCC--------c----------c------------------------------c-----cchhhcCCCCCcc
Q 002045 519 GQVVLIGATNR--------V----------D------------------------------A-----IDGALRRPGRFDR 545 (976)
Q Consensus 519 ~~vivI~atn~--------~----------~------------------------------~-----ld~aL~r~gRf~~ 545 (976)
.++++|+|||. . . . +.++|.. ||+.
T Consensus 172 ~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~ 249 (363)
T 3hws_A 172 QEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPV 249 (363)
T ss_dssp --CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCE
T ss_pred CceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCe
Confidence 12334444443 1 0 1 5677777 9999
Q ss_pred ccCCCCCCHHHHHHHHHH----HHh---------cCCCCCCHHHHHHHHH--HccCCCHHHHHHHHHHHHHHHHHhhCCc
Q 002045 546 EFNFPLPGCEARAEILDI----HTR---------KWKQPPSRELKSELAA--SCVGYCGADLKALCTEAAIRAFREKYPQ 610 (976)
Q Consensus 546 ~i~~~~P~~~er~~Il~~----~l~---------~~~~~~~~~~l~~lA~--~t~G~s~~dI~~l~~~A~~~a~~~~~~~ 610 (976)
++.|++|+.+++.+|+.. ++. ...+.+++++++.|+. ....+..++|++++..+...++.+....
T Consensus 250 ~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~ 329 (363)
T 3hws_A 250 VATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSM 329 (363)
T ss_dssp EEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTC
T ss_pred eeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999985 221 2234568888888886 4455677899999999998888764321
Q ss_pred cccCcccccccccceeEeehhhhhccc
Q 002045 611 VYTSDDKFLIDVDSVTVEKYHFIEAMS 637 (976)
Q Consensus 611 ~~~~~~~~~~~~~~~~it~~df~~al~ 637 (976)
.+...+.|+.+++...+.
T Consensus 330 ---------~~~~~~~I~~~~v~~~~~ 347 (363)
T 3hws_A 330 ---------EDVEKVVIDESVIDGQSE 347 (363)
T ss_dssp ---------CCSEEEECHHHHTTCCSC
T ss_pred ---------cCCceeEEcHHHHhCcCC
Confidence 011234566666665543
No 80
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.70 E-value=3e-16 Score=176.11 Aligned_cols=196 Identities=22% Similarity=0.241 Sum_probs=150.5
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhH
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l 454 (976)
+.+|++|+|.+.+++.|..++.... ....++.+|||+||||||||++|+++|+.++ .+|+.+++..+
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l~~~~--------~~~~~~~~vll~G~~GtGKT~la~~ia~~~~-----~~~~~~~~~~~ 91 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFIAAAK--------KRNECLDHILFSGPAGLGKTTLANIISYEMS-----ANIKTTAAPMI 91 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHHH--------HTTSCCCCEEEECSTTSSHHHHHHHHHHHTT-----CCEEEEEGGGC
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHH--------hcCCCCCeEEEECcCCCCHHHHHHHHHHHhC-----CCeEEecchhc
Confidence 4589999999999999998876521 1124567899999999999999999999875 56777777654
Q ss_pred HhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCC----------------C
Q 002045 455 LSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS----------------R 518 (976)
Q Consensus 455 ~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~----------------~ 518 (976)
.. .+ .+..++.. ...+++||||||+.+. ..++..|+..|+.... .
T Consensus 92 ~~--~~----~~~~~~~~--~~~~~vl~lDEi~~l~-----------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T 3pfi_A 92 EK--SG----DLAAILTN--LSEGDILFIDEIHRLS-----------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDL 152 (338)
T ss_dssp CS--HH----HHHHHHHT--CCTTCEEEEETGGGCC-----------HHHHHHHHHHHHTSCC---------CCCCCCCC
T ss_pred cc--hh----HHHHHHHh--ccCCCEEEEechhhcC-----------HHHHHHHHHHHHhccchhhcccCccccceecCC
Confidence 21 12 22222222 2457899999999884 3456667777764321 1
Q ss_pred CcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHH
Q 002045 519 GQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTE 598 (976)
Q Consensus 519 ~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~ 598 (976)
..++||++||....++++|++ ||+..+.|++|+.+++..|++.++...+..++.+.+..++..+.| +.+.+.+++..
T Consensus 153 ~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~ 229 (338)
T 3pfi_A 153 PKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKR 229 (338)
T ss_dssp CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHH
T ss_pred CCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHH
Confidence 148999999999999999999 999999999999999999999999988888888988999996665 56888888888
Q ss_pred HHHHHHH
Q 002045 599 AAIRAFR 605 (976)
Q Consensus 599 A~~~a~~ 605 (976)
+...+..
T Consensus 230 ~~~~a~~ 236 (338)
T 3pfi_A 230 VRDFADV 236 (338)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7655544
No 81
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.70 E-value=1.5e-17 Score=158.83 Aligned_cols=65 Identities=20% Similarity=0.348 Sum_probs=62.1
Q ss_pred ccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 912 YDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 912 ~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
.+..+++|..||+...+|+|+++|++||||+||++||.++.|.|+.+|.+||.|||+||++||++
T Consensus 32 ~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~~yN~~ 96 (129)
T 2grc_A 32 GRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLE 96 (129)
T ss_dssp CCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCT
T ss_pred cCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 34578999999999999999999999999999999999999999999999999999999999985
No 82
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.70 E-value=3.3e-16 Score=181.90 Aligned_cols=228 Identities=15% Similarity=0.168 Sum_probs=160.7
Q ss_pred cCCCCCccccc-ChHH--HHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEE
Q 002045 372 VDESVSFDDIG-GLSE--YIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM 448 (976)
Q Consensus 372 ~~~~~~~~~i~-G~~~--~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~ 448 (976)
.++..+|++++ |..+ .+..+..+...| + . +.+++|+||||||||++|+++++.+........++.
T Consensus 98 l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~ 165 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSFAYHAALEVAKHP----------G-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMY 165 (440)
T ss_dssp CCTTCSGGGCCCCTTTHHHHHHHHHHHHST----------T-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEE
T ss_pred CCCCCChhhcCCCCchHHHHHHHHHHHhCC----------C-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 34677999976 6433 444444444331 1 2 568999999999999999999999866533456778
Q ss_pred ecchhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCC
Q 002045 449 RKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (976)
Q Consensus 449 ~~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn 528 (976)
+++..+...+.+.........|.......++||||||++.+.... .....|+..++.+...+..+||++.+
T Consensus 166 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~---------~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 166 ITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT---------GVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp EEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH---------HHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred eeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh---------HHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 888887665554433222223333333367899999999986421 22334555555444456677777766
Q ss_pred Cccc---cchhhcCCCCCc--cccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Q 002045 529 RVDA---IDGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRA 603 (976)
Q Consensus 529 ~~~~---ld~aL~r~gRf~--~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a 603 (976)
.+.. ++++|++ ||. .++.+++|+.+++.+||+..+...++.++.+++..|+..+.| +.+++.+++..+...+
T Consensus 237 ~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 237 EPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_dssp CGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 6665 7889988 775 789999999999999999999877778888888999988875 7889999998887766
Q ss_pred HHhhCCccccCcccccccccceeEeehhhhhcccccc
Q 002045 604 FREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (976)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~i~ 640 (976)
.... ..|+.+++..++....
T Consensus 314 ~~~~-----------------~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 314 ETTG-----------------KEVDLKEAILLLKDFI 333 (440)
T ss_dssp HHSS-----------------SCCCHHHHHHHTSTTT
T ss_pred HHhC-----------------CCCCHHHHHHHHHHHh
Confidence 5421 1267777777776654
No 83
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.70 E-value=1.6e-17 Score=157.62 Aligned_cols=64 Identities=17% Similarity=0.313 Sum_probs=62.0
Q ss_pred cccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 913 DKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 913 ~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
++.+++|..||+...+|+|+++|++||||+||++||+++.|.++++|.+||.|||+||++||++
T Consensus 36 ~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 99 (124)
T 3mb4_A 36 RRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEP 99 (124)
T ss_dssp CBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCT
T ss_pred CcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 6678999999999999999999999999999999999999999999999999999999999985
No 84
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=7.4e-18 Score=160.67 Aligned_cols=78 Identities=42% Similarity=0.755 Sum_probs=74.3
Q ss_pred HHHHhHhhhhhhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhh
Q 002045 894 HALRRLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVS 973 (976)
Q Consensus 894 ~alreLr~~L~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 973 (976)
+.+++|+.+++.++..+..++.+++|..| +|+|+++|++||||+||++||.++.|.|+.+|.+||.|||+||++|
T Consensus 8 ~~~~~L~~~~~~il~~l~~~~~~~~F~~P-----~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~y 82 (131)
T 2dkw_A 8 NTLRELRLFLRDVTKRLATDKRFNIFSKP-----VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEY 82 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHSGGGCTTSSC-----CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhCccchhhcCc-----CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 56778888899999999999999999998 8999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 002045 974 TCA 976 (976)
Q Consensus 974 n~~ 976 (976)
|++
T Consensus 83 N~~ 85 (131)
T 2dkw_A 83 NPD 85 (131)
T ss_dssp CCC
T ss_pred CCC
Confidence 985
No 85
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.69 E-value=2.5e-17 Score=162.19 Aligned_cols=78 Identities=29% Similarity=0.518 Sum_probs=69.6
Q ss_pred Hhhhhhhhhc-cccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 899 LRMCLRDVCN-RMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 899 Lr~~L~~il~-~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
+...|..++. ++..++.+++|..||++..+|+|+.+|++||||+||++||.++.|.++++|.+||.|||+||++||++
T Consensus 30 l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~ 108 (158)
T 3uv4_A 30 FSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGP 108 (158)
T ss_dssp HHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCCchhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 3344444544 36678889999999999999999999999999999999999999999999999999999999999985
No 86
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.69 E-value=1.8e-17 Score=157.84 Aligned_cols=64 Identities=22% Similarity=0.274 Sum_probs=61.6
Q ss_pred cccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 913 DKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 913 ~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
+..+++|..||++..+|+|+++|++||||+||++||+++.|.|+++|.+||.|||+||++||++
T Consensus 30 ~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 93 (126)
T 3mqm_A 30 QALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKYYGR 93 (126)
T ss_dssp CBTTGGGSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHCT
T ss_pred CChhHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4568999999999999999999999999999999999999999999999999999999999985
No 87
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.69 E-value=1.5e-17 Score=157.10 Aligned_cols=73 Identities=27% Similarity=0.414 Sum_probs=65.7
Q ss_pred hhhhcccccccc---ccccccCCCCCC--ccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 904 RDVCNRMLYDKR---FSAFHYPVTDED--APNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 904 ~~il~~l~~~~~---~~~F~~PV~~~~--~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
..+|..+..++. +|+|..||++.. +|+|+++|++||||+||++||+++.|.|+++|.+||+|||+||++||++
T Consensus 15 ~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 92 (120)
T 3jvl_A 15 SGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYKYNPP 92 (120)
T ss_dssp HHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 345555555555 899999999987 9999999999999999999999999999999999999999999999985
No 88
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.69 E-value=3.2e-18 Score=221.50 Aligned_cols=111 Identities=13% Similarity=0.060 Sum_probs=83.0
Q ss_pred CCc--eeeccCCCCcHhhHHHHHHHhh--cCCCeeecCCcccc------------cCCCCCC----hHHHHHHHHHHHHh
Q 002045 703 RPR--LLLCGSEGTGVDHLGPAILHEL--EKFPVHSLGLPALL------------SDPSAKT----PEEALVHIFGEARR 762 (976)
Q Consensus 703 ~~~--~Ll~G~pGtGKT~lA~aia~~l--~~~~~~~~~~~~l~------------~~~~~g~----~e~~~~~~f~~a~~ 762 (976)
|+| +|+|||||||||++|++++.+. ++-+.+.|+..+++ ++| +++ +|++++.+|..|++
T Consensus 1080 p~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~-~~~~~~~~e~~l~~~~~~ar~ 1158 (1706)
T 3cmw_A 1080 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNL-LCSQPDTGEQALEICDALARS 1158 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGC-EEECCSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHH-hhccccchHHHHHHHHHHHHh
Confidence 355 9999999999999999999874 23343344443433 454 467 89999999999999
Q ss_pred cCCceEeccccchhHHH-------------HHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCc
Q 002045 763 TTPSILYIPQFNLWWEN-------------AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVE 815 (976)
Q Consensus 763 ~~p~ilfiDEid~l~~~-------------~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld 815 (976)
..||+||||++++|.+. ...++++++++.|+.+....+|+|| +||+..+.+.
T Consensus 1159 ~~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~~~~~~ 1223 (1706)
T 3cmw_A 1159 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQIRMKIG 1223 (1706)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECEEECTT
T ss_pred cCCeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccccccch
Confidence 99999999999988754 2234567777777777667788888 7787755554
No 89
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.69 E-value=3e-17 Score=156.51 Aligned_cols=65 Identities=20% Similarity=0.274 Sum_probs=62.5
Q ss_pred ccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 912 YDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 912 ~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
.++.+++|..||+...+|+|+++|++||||+||++||+++.|.|+++|.+||+|||.||++||++
T Consensus 37 g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~ 101 (130)
T 3k2j_A 37 GQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVP 101 (130)
T ss_dssp SCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred CCCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 46668999999999999999999999999999999999999999999999999999999999986
No 90
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.69 E-value=3.5e-17 Score=156.30 Aligned_cols=73 Identities=26% Similarity=0.400 Sum_probs=65.2
Q ss_pred hhhhccccccc---cccccccCCCCC--CccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 904 RDVCNRMLYDK---RFSAFHYPVTDE--DAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 904 ~~il~~l~~~~---~~~~F~~PV~~~--~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
..||..+..++ .+++|..||++. ++|+|+++|++||||+||++||+++.|.|+++|.+||+|||+||++||++
T Consensus 28 ~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~ 105 (130)
T 2ouo_A 28 SGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPP 105 (130)
T ss_dssp HHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 34566665554 378999999986 49999999999999999999999999999999999999999999999985
No 91
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.68 E-value=1.9e-16 Score=172.20 Aligned_cols=206 Identities=20% Similarity=0.243 Sum_probs=142.6
Q ss_pred ccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhH-Hhh
Q 002045 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV-LSK 457 (976)
Q Consensus 379 ~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l-~~~ 457 (976)
..++|.....+.+...... ....+...+..++.++||+||||||||++|+++|+.++ .+|+.+++++. ++.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~---l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~-----~~~~~i~~~~~~~g~ 104 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGEL---LVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN-----FPFIKICSPDKMIGF 104 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHH---HHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT-----CSEEEEECGGGCTTC
T ss_pred cCCCCccHHHHHHHHHHHH---HHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEeCHHHhcCC
Confidence 4577877766666553211 11223333456778999999999999999999999975 56677766542 222
Q ss_pred hHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC-CCCcEEEEecCCCccccch-
Q 002045 458 WVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-SRGQVVLIGATNRVDAIDG- 535 (976)
Q Consensus 458 ~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~-~~~~vivI~atn~~~~ld~- 535 (976)
..+.....++.+|..+....++||||||||.|++.+... ......++..|+..++... ....++||++||.++.+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~ 183 (272)
T 1d2n_A 105 SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEM 183 (272)
T ss_dssp CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT-TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC-hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchh
Confidence 223344567888888887778999999999997654322 2234567777777777654 3346889999999988888
Q ss_pred hhcCCCCCccccCCCCCCH-HHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCC----CHHHHHHHHHHHH
Q 002045 536 ALRRPGRFDREFNFPLPGC-EARAEILDIHTRKWKQPPSRELKSELAASCVGY----CGADLKALCTEAA 600 (976)
Q Consensus 536 aL~r~gRf~~~i~~~~P~~-~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~----s~~dI~~l~~~A~ 600 (976)
.+.+ ||+..|.+|+++. ++...++.. .. .++.+.+..++..+.|+ +.+++.+++..|.
T Consensus 184 ~l~~--rf~~~i~~p~l~~r~~i~~i~~~---~~--~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~ 246 (272)
T 1d2n_A 184 EMLN--AFSTTIHVPNIATGEQLLEALEL---LG--NFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSL 246 (272)
T ss_dssp TCTT--TSSEEEECCCEEEHHHHHHHHHH---HT--CSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHT
T ss_pred hhhc--ccceEEcCCCccHHHHHHHHHHh---cC--CCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHh
Confidence 5555 9998999887765 555555443 22 34677788999999987 5667777666553
No 92
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.68 E-value=2.7e-17 Score=155.16 Aligned_cols=65 Identities=31% Similarity=0.473 Sum_probs=61.9
Q ss_pred ccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 912 YDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 912 ~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
.+..+++|..||+...+|+|+++|++||||+||++||+++.|.++++|.+||.|||+||++||++
T Consensus 28 g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 92 (120)
T 3ljw_A 28 GRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEP 92 (120)
T ss_dssp SCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHSCT
T ss_pred CCcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 34558999999999999999999999999999999999999999999999999999999999985
No 93
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.68 E-value=2.1e-17 Score=164.44 Aligned_cols=78 Identities=22% Similarity=0.391 Sum_probs=69.7
Q ss_pred HhhhhhhhhccccccccccccccCCCCC--CccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 899 LRMCLRDVCNRMLYDKRFSAFHYPVTDE--DAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 899 Lr~~L~~il~~l~~~~~~~~F~~PV~~~--~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
++..+..++..+..++.+++|..||++. .+|+|+.+|++||||+||++||.++.|.++.+|++||+|||.||++||++
T Consensus 22 ~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~ 101 (166)
T 3fkm_X 22 WYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSLYNTS 101 (166)
T ss_dssp HHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4455567788888899999999999986 69999999999999999999999999999999999999999999999986
No 94
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.67 E-value=5.3e-16 Score=161.94 Aligned_cols=191 Identities=25% Similarity=0.179 Sum_probs=142.2
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
....|++++|.+.+++.|..++.. ....++||+||||||||++|+++++.+...+....++.+++..
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 78 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHT-------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc
Confidence 456789999999999999988754 1233599999999999999999999986655556677777654
Q ss_pred HHhhhHhHHHHHHHHHHHHHH------hcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecC
Q 002045 454 VLSKWVGEAERQLKLLFEEAQ------RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~------~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~at 527 (976)
.... ..+...+.... ...++||||||+|.+. ...+..|+..++.. ..++++|++|
T Consensus 79 ~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~l~~~l~~~--~~~~~~i~~~ 139 (226)
T 2chg_A 79 ERGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALT-----------ADAQAALRRTMEMY--SKSCRFILSC 139 (226)
T ss_dssp TTCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSC-----------HHHHHHHHHHHHHT--TTTEEEEEEE
T ss_pred ccCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhcC-----------HHHHHHHHHHHHhc--CCCCeEEEEe
Confidence 3221 11122222221 2457899999999884 22345566666642 3467888889
Q ss_pred CCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 002045 528 NRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAA 600 (976)
Q Consensus 528 n~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~ 600 (976)
|.+..+++++.+ ||. .+.|++|+.++..+++...+...+..++.+.+..++..+.| +.+.+.+++..++
T Consensus 140 ~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~ 208 (226)
T 2chg_A 140 NYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAA 208 (226)
T ss_dssp SCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred CChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 998899999998 886 89999999999999999998877777888888899988766 5566666666554
No 95
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.66 E-value=5.2e-17 Score=152.35 Aligned_cols=64 Identities=20% Similarity=0.345 Sum_probs=61.6
Q ss_pred cccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 913 DKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 913 ~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
++.+++|..||+...+|+|+++|++||||+||++||+++.|.|+++|.+||+|||+||++||++
T Consensus 26 ~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 89 (116)
T 3iu5_A 26 RLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSYYKP 89 (116)
T ss_dssp CBGGGGGSSCCCGGGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCT
T ss_pred CeeeHHhcCCCCcccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4568999999999999999999999999999999999999999999999999999999999985
No 96
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.66 E-value=1.9e-15 Score=168.76 Aligned_cols=202 Identities=13% Similarity=0.185 Sum_probs=145.1
Q ss_pred CCCCCccccc-C--hHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEe
Q 002045 373 DESVSFDDIG-G--LSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR 449 (976)
Q Consensus 373 ~~~~~~~~i~-G--~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~ 449 (976)
.+..+|++++ | .......+..++..| ...+.+++|+||||||||++|+++++.+...+ ..++.+
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~-----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~--~~~~~i 71 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALENL-----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRG--YRVIYS 71 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTT-----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTT--CCEEEE
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhCc-----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCC--CEEEEE
Confidence 3677899986 4 444555666655442 12457899999999999999999999986543 567778
Q ss_pred cchhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCC
Q 002045 450 KGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (976)
Q Consensus 450 ~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~ 529 (976)
++.++...+.+.........|.... ..++||||||++.+...+ ..+..|+..++.....+..+||++++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~---------~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 72 SADDFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE---------RTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp EHHHHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH---------HHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred EHHHHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh---------HHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 8888876665554432222333322 237799999999986321 123334444443333456777878777
Q ss_pred cc---ccchhhcCCCCCc--cccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Q 002045 530 VD---AIDGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIR 602 (976)
Q Consensus 530 ~~---~ld~aL~r~gRf~--~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~ 602 (976)
+. .++++|.+ ||. .++.|++ +.+++.+|++.++...+..++++.++.|+..+ | +.+++.+++..+...
T Consensus 142 ~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 142 PQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLK 214 (324)
T ss_dssp GGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHH
T ss_pred hHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHc
Confidence 76 57899988 885 6789999 99999999999999888889999999999999 4 678888888776644
No 97
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.66 E-value=7.9e-17 Score=154.91 Aligned_cols=72 Identities=29% Similarity=0.421 Sum_probs=66.6
Q ss_pred hhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhC--CCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 904 RDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDS--GHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 904 ~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~--~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
..+|..+..++.+++|..||+. .+|+|+++|++||||+||++||++ +.|.|+++|.+||+|||+||++||++
T Consensus 26 ~~il~~L~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~ 99 (135)
T 2yyn_A 26 ERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEP 99 (135)
T ss_dssp HHHHHHHHTSGGGGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHhCccchhhcCCCcc-cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4566777778899999999998 799999999999999999999998 58999999999999999999999975
No 98
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.66 E-value=2e-16 Score=155.45 Aligned_cols=84 Identities=19% Similarity=0.303 Sum_probs=70.3
Q ss_pred HHHHHhHhhhhhhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhh
Q 002045 893 QHALRRLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKV 972 (976)
Q Consensus 893 ~~alreLr~~L~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 972 (976)
...+..+-..+.+.......+..+++|..||+...+|+|+++|++||||+||++||+++.|.++++|++||+|||+||++
T Consensus 26 ~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 105 (150)
T 3tlp_A 26 KQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARH 105 (150)
T ss_dssp HHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 33344443443434333445777999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCC
Q 002045 973 STCA 976 (976)
Q Consensus 973 yn~~ 976 (976)
||++
T Consensus 106 yN~~ 109 (150)
T 3tlp_A 106 YNEE 109 (150)
T ss_dssp HSCT
T ss_pred HCCC
Confidence 9985
No 99
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.65 E-value=1.7e-15 Score=168.80 Aligned_cols=192 Identities=23% Similarity=0.269 Sum_probs=143.8
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhH
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l 454 (976)
..+|++++|.+.++..|..++... ... ...+.++||+||||||||++|+++++.++ .+++.+++..+
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~-------~~~-~~~~~~vll~G~~GtGKT~la~~i~~~~~-----~~~~~~~~~~~ 74 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAA-------KAR-KEPLEHLLLFGPPGLGKTTLAHVIAHELG-----VNLRVTSGPAI 74 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHH-------HHH-CSCCCCCEEECCTTCCCHHHHHHHHHHHT-----CCEEEECTTTC
T ss_pred cccHHHhhCHHHHHHHHHHHHHHH-------Hcc-CCCCCcEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEecccc
Confidence 457899999999999998887541 111 13457899999999999999999999885 55667777654
Q ss_pred HhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC----------------CC
Q 002045 455 LSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD----------------SR 518 (976)
Q Consensus 455 ~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~----------------~~ 518 (976)
.. ...+...|..+ ...+++|||||+|.+. ...+..|+..++... ..
T Consensus 75 ~~------~~~l~~~l~~~-~~~~~~l~lDEi~~l~-----------~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~ 136 (324)
T 1hqc_A 75 EK------PGDLAAILANS-LEEGDILFIDEIHRLS-----------RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLEL 136 (324)
T ss_dssp CS------HHHHHHHHTTT-CCTTCEEEETTTTSCC-----------HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEEC
T ss_pred CC------hHHHHHHHHHh-ccCCCEEEEECCcccc-----------cchHHHHHHHHHhhhhHHhccccccccccccCC
Confidence 21 11112222210 1457799999999884 234455666665321 01
Q ss_pred CcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHH
Q 002045 519 GQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTE 598 (976)
Q Consensus 519 ~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~ 598 (976)
..+++|++||.+..++++|.+ ||..++.|++|+.+++..++..++...+..++.+.+..++..+.| +.+.+.+++..
T Consensus 137 ~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~ 213 (324)
T 1hqc_A 137 PRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRR 213 (324)
T ss_dssp CCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHH
Confidence 357899999999999999988 998899999999999999999999888888899999999999866 56788888776
Q ss_pred HH
Q 002045 599 AA 600 (976)
Q Consensus 599 A~ 600 (976)
+.
T Consensus 214 ~~ 215 (324)
T 1hqc_A 214 VR 215 (324)
T ss_dssp HT
T ss_pred HH
Confidence 64
No 100
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.64 E-value=1.4e-15 Score=161.36 Aligned_cols=196 Identities=14% Similarity=0.106 Sum_probs=137.0
Q ss_pred CCCCcccccC---hHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEec
Q 002045 374 ESVSFDDIGG---LSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (976)
Q Consensus 374 ~~~~~~~i~G---~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~ 450 (976)
+..+|++++| ...++..|..++.. ..+.++||+||||||||++|+++++.+...+.. ++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~--~~~~~ 87 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERR--SFYIP 87 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCC--EEEEE
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCe--EEEEE
Confidence 4578889886 34666667666543 245789999999999999999999999876544 44555
Q ss_pred chhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcE-EEEecCCC
Q 002045 451 GADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQV-VLIGATNR 529 (976)
Q Consensus 451 ~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~v-ivI~atn~ 529 (976)
+.++...+.. .+.. ...+.||||||++.+... ......|+..++.....+.+ +|++++..
T Consensus 88 ~~~~~~~~~~--------~~~~--~~~~~vliiDe~~~~~~~---------~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 88 LGIHASISTA--------LLEG--LEQFDLICIDDVDAVAGH---------PLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGGGGGSCGG--------GGTT--GGGSSEEEEETGGGGTTC---------HHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred HHHHHHHHHH--------HHHh--ccCCCEEEEeccccccCC---------HHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 6655433211 1111 134679999999988532 11123344444433333444 55555544
Q ss_pred cc---ccchhhcCCCCCc--cccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q 002045 530 VD---AIDGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAF 604 (976)
Q Consensus 530 ~~---~ld~aL~r~gRf~--~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~ 604 (976)
+. .+.+.+.+ ||. .++.|++|+.+++.+++..++...+..++.+.++.++..+.| +.+++.+++..+...+.
T Consensus 149 ~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~ 225 (242)
T 3bos_A 149 PMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASM 225 (242)
T ss_dssp TTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHH
Confidence 43 35577877 775 789999999999999999999888888899999999998866 78899999998887765
Q ss_pred Hh
Q 002045 605 RE 606 (976)
Q Consensus 605 ~~ 606 (976)
..
T Consensus 226 ~~ 227 (242)
T 3bos_A 226 VH 227 (242)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 101
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.64 E-value=9.4e-16 Score=198.62 Aligned_cols=156 Identities=16% Similarity=0.205 Sum_probs=116.0
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCC----------hhHHhh------cC------------CCCCceEEEEcCCCCh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLY----------PDFFAS------YH------------ITPPRGVLLCGPPGTG 425 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~----------~~~~~~------~~------------~~~~~~vLL~GppGtG 425 (976)
..++|++|+|++++|..+.+.+.+|+.+ ++.|.. .| ++..+.+|||||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 4589999999999999999999999844 556665 22 3344459999999999
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEEecc--hhHH--------hhhHhH----HHHHHHHHHHHHHhcCCcEEEEccccccCC
Q 002045 426 KTLIARALACAASKAGQKVSFYMRKG--ADVL--------SKWVGE----AERQLKLLFEEAQRNQPSIIFFDEIDGLAP 491 (976)
Q Consensus 426 KT~laralA~~l~~~~~~~~~~~~~~--~~l~--------~~~~g~----~~~~l~~~f~~a~~~~p~VL~iDEid~L~~ 491 (976)
||++|++++.+....+....|+.+.. .+++ .+|+++ ++..++.+|..|+...||+||+|++++|+|
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 99999999999887766667776655 4444 566777 899999999999999999999999999999
Q ss_pred CCCC---h---hhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCc
Q 002045 492 VRSS---K---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (976)
Q Consensus 492 ~r~~---~---~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~ 530 (976)
.+.. . ......+++++++..|++.....+|+|| +||+.
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 8421 1 1245677899999999987766778777 66664
No 102
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.63 E-value=2.3e-15 Score=171.63 Aligned_cols=243 Identities=19% Similarity=0.240 Sum_probs=153.9
Q ss_pred cccChHHHHHHHHHHHHcccCChhHHh-----------------hcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC
Q 002045 380 DIGGLSEYIDALKEMVFFPLLYPDFFA-----------------SYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ 442 (976)
Q Consensus 380 ~i~G~~~~k~~l~~~v~~pl~~~~~~~-----------------~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~ 442 (976)
.|+|++.+++.|..++..+........ .....++.++||+||||||||++|+++|+.++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~---- 97 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD---- 97 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT----
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC----
Confidence 489999999999988743322211100 01124567899999999999999999999884
Q ss_pred cEEEEEecchhHH-hhhHhHH-HHHHHHHHHHH----HhcCCcEEEEccccccCCCCCChh---hhhHHHHHHHHHHHhh
Q 002045 443 KVSFYMRKGADVL-SKWVGEA-ERQLKLLFEEA----QRNQPSIIFFDEIDGLAPVRSSKQ---EQIHNSIVSTLLALMD 513 (976)
Q Consensus 443 ~~~~~~~~~~~l~-~~~~g~~-~~~l~~~f~~a----~~~~p~VL~iDEid~L~~~r~~~~---~~~~~~~~~~Ll~~ld 513 (976)
.+|+.+++..+. ..++|.. ...+..++..+ ....++||||||+|.+.+.+.... +.....++..|+..|+
T Consensus 98 -~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le 176 (376)
T 1um8_A 98 -IPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVE 176 (376)
T ss_dssp -CCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHH
T ss_pred -CCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhh
Confidence 567778877654 3455543 33444554432 234577999999999986532211 1112237888999988
Q ss_pred ccC-------------------CCCcEEEEecCCC-----------------------------------------cccc
Q 002045 514 GLD-------------------SRGQVVLIGATNR-----------------------------------------VDAI 533 (976)
Q Consensus 514 ~~~-------------------~~~~vivI~atn~-----------------------------------------~~~l 533 (976)
+.. ...++++|+++|. ...+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 256 (376)
T 1um8_A 177 GSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGL 256 (376)
T ss_dssp CCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTC
T ss_pred ccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCC
Confidence 531 1245567776652 0124
Q ss_pred chhhcCCCCCccccCCCCCCHHHHHHHHHH----HH---------hcCCCCCCHHHHHHHHHHcc--CCCHHHHHHHHHH
Q 002045 534 DGALRRPGRFDREFNFPLPGCEARAEILDI----HT---------RKWKQPPSRELKSELAASCV--GYCGADLKALCTE 598 (976)
Q Consensus 534 d~aL~r~gRf~~~i~~~~P~~~er~~Il~~----~l---------~~~~~~~~~~~l~~lA~~t~--G~s~~dI~~l~~~ 598 (976)
.+.|.+ ||+.++.|++++.++...|+.. ++ ....+.++.+++..|+.... ....+.+.+++..
T Consensus 257 ~p~l~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~ 334 (376)
T 1um8_A 257 IPELIG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIED 334 (376)
T ss_dssp CHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHH
T ss_pred ChHHhc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHH
Confidence 566666 8888899999999999999962 21 12245578888899988754 3567999999999
Q ss_pred HHHHHHHhhCCccccCcccccccccceeEeehhhhhccccc
Q 002045 599 AAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (976)
Q Consensus 599 A~~~a~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~i 639 (976)
+...++.+.... ......|+.+++..++..+
T Consensus 335 ~~~~~~~~~~~~----------~~~~~~i~~~~v~~~~~~~ 365 (376)
T 1um8_A 335 FCLDIMFDLPKL----------KGSEVRITKDCVLKQAEPL 365 (376)
T ss_dssp HHHHHHHTGGGG----------TTSEEEECHHHHTTSSCCE
T ss_pred HHHHHHhhccCC----------CCCEEEEeHHHhcCCCCce
Confidence 988887754321 1234567888877655443
No 103
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.63 E-value=2.7e-16 Score=158.98 Aligned_cols=75 Identities=32% Similarity=0.475 Sum_probs=70.0
Q ss_pred hhhhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 902 CLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 902 ~L~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
.+..+|..+..++.+++|..||++..+|+|+++|++||||+||++||+++.|.|+++|.+||+|||+||++||++
T Consensus 76 ~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 150 (174)
T 2ri7_A 76 GLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPS 150 (174)
T ss_dssp HHHHHHHHHHTSGGGTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHhhhhhhhhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 345677777788899999999999999999999999999999999999999999999999999999999999975
No 104
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.63 E-value=8.5e-16 Score=179.91 Aligned_cols=193 Identities=25% Similarity=0.295 Sum_probs=141.0
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC-----CcEEEEEe
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYMR 449 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~~ 449 (976)
.-+|++|+|.+..++.+..++.. ....++||+||||||||++|+++|..+.... ....++.+
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred cCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 45788999999999999887754 3456899999999999999999999985422 24567777
Q ss_pred cchhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCC
Q 002045 450 KGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (976)
Q Consensus 450 ~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~ 529 (976)
++. ..+.|+.+..++.+|..+....++||||| . .....+.|+..|+ .+.+.||++||.
T Consensus 243 ~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~----------~~~a~~~L~~~L~----~g~v~vI~at~~ 300 (468)
T 3pxg_A 243 DMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------AIDASNILKPSLA----RGELQCIGATTL 300 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCCTT----SSSCEEEEECCT
T ss_pred eCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----C----------chhHHHHHHHhhc----CCCEEEEecCCH
Confidence 776 66788888889999999998889999999 1 1123333444443 568999999999
Q ss_pred cc-----ccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHccCCC-----HHHHHHH
Q 002045 530 VD-----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK----WKQPPSRELKSELAASCVGYC-----GADLKAL 595 (976)
Q Consensus 530 ~~-----~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~----~~~~~~~~~l~~lA~~t~G~s-----~~dI~~l 595 (976)
++ .++++|.+ ||. .|.|+.|+.+++..||+.++.. .+..++++.+..++..+.+|. +.....+
T Consensus 301 ~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~l 377 (468)
T 3pxg_A 301 DEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDL 377 (468)
T ss_dssp TTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHH
T ss_pred HHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHH
Confidence 87 58999999 996 5999999999999999988776 567788888888888776654 3467777
Q ss_pred HHHHHHHHHH
Q 002045 596 CTEAAIRAFR 605 (976)
Q Consensus 596 ~~~A~~~a~~ 605 (976)
+.+|+..+..
T Consensus 378 l~~a~~~~~~ 387 (468)
T 3pxg_A 378 IDEAGSKVRL 387 (468)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777755443
No 105
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.62 E-value=3.2e-15 Score=173.40 Aligned_cols=208 Identities=19% Similarity=0.213 Sum_probs=146.6
Q ss_pred CCCcccccChHHHH---HHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecc
Q 002045 375 SVSFDDIGGLSEYI---DALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (976)
Q Consensus 375 ~~~~~~i~G~~~~k---~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~ 451 (976)
..+|++++|++.++ ..|..++.. ....++||+||||||||++|++||+.++ ..|+.+++
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~-------------~~~~~vLL~GppGtGKTtlAr~ia~~~~-----~~f~~l~a 83 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEA-------------GHLHSMILWGPPGTGKTTLAEVIARYAN-----ADVERISA 83 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHH-------------TCCCEEEEECSTTSSHHHHHHHHHHHTT-----CEEEEEET
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHc-------------CCCcEEEEECCCCCcHHHHHHHHHHHhC-----CCeEEEEe
Confidence 46899999999998 677776654 1236899999999999999999999985 56777765
Q ss_pred hhHHhhhHhHHHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecC
Q 002045 452 ADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (976)
Q Consensus 452 ~~l~~~~~g~~~~~l~~~f~~a~----~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~at 527 (976)
.... ...++.++..+. ...++||||||||.|.. ..+..|+..++. +.++||++|
T Consensus 84 ~~~~-------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~-----------~~q~~LL~~le~----~~v~lI~at 141 (447)
T 3pvs_A 84 VTSG-------VKEIREAIERARQNRNAGRRTILFVDEVHRFNK-----------SQQDAFLPHIED----GTITFIGAT 141 (447)
T ss_dssp TTCC-------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT----TSCEEEEEE
T ss_pred ccCC-------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH-----------HHHHHHHHHHhc----CceEEEecC
Confidence 4321 122333444333 34678999999999842 344567777773 456666665
Q ss_pred --CCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhc-------CCCCCCHHHHHHHHHHccCCCHHHHHHHHHH
Q 002045 528 --NRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK-------WKQPPSRELKSELAASCVGYCGADLKALCTE 598 (976)
Q Consensus 528 --n~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~-------~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~ 598 (976)
|....++++|++ |+. ++.|++|+.+++..|+...+.. ....++++.++.|+..+.| ..+.+.+++..
T Consensus 142 t~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~ 217 (447)
T 3pvs_A 142 TENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEM 217 (447)
T ss_dssp SSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHH
T ss_pred CCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 445579999999 875 7889999999999999999876 4456788899999999765 66777787777
Q ss_pred HHHHHHHhhCCccccCcccccccccceeEeehhhhhcccccc
Q 002045 599 AAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (976)
Q Consensus 599 A~~~a~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~i~ 640 (976)
++..+... ......|+.+++..++....
T Consensus 218 a~~~a~~~--------------~~~~~~It~e~v~~~l~~~~ 245 (447)
T 3pvs_A 218 MADMAEVD--------------DSGKRVLKPELLTEIAGERS 245 (447)
T ss_dssp HHHHSCBC--------------TTSCEECCHHHHHHHHTCCC
T ss_pred HHHhcccc--------------cCCCCccCHHHHHHHHhhhh
Confidence 66432110 00123578888887776543
No 106
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.61 E-value=1.3e-14 Score=165.30 Aligned_cols=231 Identities=22% Similarity=0.197 Sum_probs=157.6
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc----CCcEEEEEec
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA----GQKVSFYMRK 450 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~----~~~~~~~~~~ 450 (976)
...+++++|.+..++.|..++...+ ....+.+++|+||||||||++|+++++.+... +....++.++
T Consensus 15 ~~~p~~~~gr~~~~~~l~~~l~~~~---------~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (387)
T 2v1u_A 15 DYVPDVLPHREAELRRLAEVLAPAL---------RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN 85 (387)
T ss_dssp TCCCSCCTTCHHHHHHHHHTTGGGT---------SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHH---------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE
Confidence 3445789999999999988764311 12456789999999999999999999988543 2347788888
Q ss_pred chhHH------hhhH----------hH-HHHHHHHHHHHHHh-cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHh
Q 002045 451 GADVL------SKWV----------GE-AERQLKLLFEEAQR-NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALM 512 (976)
Q Consensus 451 ~~~l~------~~~~----------g~-~~~~l~~~f~~a~~-~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~l 512 (976)
+.... .... |. ....+..++..+.. ..++||||||+|.+...+ ....++..|+.++
T Consensus 86 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~------~~~~~l~~l~~~~ 159 (387)
T 2v1u_A 86 ARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP------GGQDLLYRITRIN 159 (387)
T ss_dssp TTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST------THHHHHHHHHHGG
T ss_pred CCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC------CCChHHHhHhhch
Confidence 75422 1111 11 22234444444433 347899999999885321 1335566666666
Q ss_pred hccCCCCcEEEEecCCCc---cccchhhcCCCCCcc-ccCCCCCCHHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHcc-
Q 002045 513 DGLDSRGQVVLIGATNRV---DAIDGALRRPGRFDR-EFNFPLPGCEARAEILDIHTRK--WKQPPSRELKSELAASCV- 585 (976)
Q Consensus 513 d~~~~~~~vivI~atn~~---~~ld~aL~r~gRf~~-~i~~~~P~~~er~~Il~~~l~~--~~~~~~~~~l~~lA~~t~- 585 (976)
+......+++||++||.+ ..+++.+.+ ||.. .+.|++|+.+++.+|++..+.. ....++.+.++.++..+.
T Consensus 160 ~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~ 237 (387)
T 2v1u_A 160 QELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAR 237 (387)
T ss_dssp GCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHS
T ss_pred hhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHH
Confidence 543214578888888887 678899988 8875 8999999999999999988864 345567777888888887
Q ss_pred --CCCHHHHHHHHHHHHHHHHHhhCCccccCcccccccccceeEeehhhhhccccc
Q 002045 586 --GYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (976)
Q Consensus 586 --G~s~~dI~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~i 639 (976)
| ..+.+.++|..|+..+..... ..|+.+++..++...
T Consensus 238 ~~G-~~r~~~~~l~~a~~~a~~~~~----------------~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 238 EHG-DARRALDLLRVAGEIAERRRE----------------ERVRREHVYSARAEI 276 (387)
T ss_dssp SSC-CHHHHHHHHHHHHHHHHHTTC----------------SCBCHHHHHHHHHHH
T ss_pred hcc-CHHHHHHHHHHHHHHHHHcCC----------------CCcCHHHHHHHHHHH
Confidence 5 567778888888766654321 236677777766544
No 107
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.61 E-value=2.2e-15 Score=153.38 Aligned_cols=164 Identities=24% Similarity=0.333 Sum_probs=119.1
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC-----CcEEEEEe
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYMR 449 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~~ 449 (976)
...|++++|.++.++.+.+.+.. ..+.++||+||||||||++|+++++.+.... ....++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred hccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 34688899999998888877543 3457899999999999999999999986421 13567778
Q ss_pred cchhHH--hhhHhHHHHHHHHHHHHHHh-cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEec
Q 002045 450 KGADVL--SKWVGEAERQLKLLFEEAQR-NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGA 526 (976)
Q Consensus 450 ~~~~l~--~~~~g~~~~~l~~~f~~a~~-~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~a 526 (976)
++..+. ..+.+.....+..++..+.. ..++||||||+|.+.+.+...... .+...|...++ .+++.+|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~---~~~~~l~~~~~----~~~~~~i~~ 157 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAM---DAGNMLKPALA----RGELHCVGA 157 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CC---CCHHHHHHHHH----TTSCCEEEE
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchH---HHHHHHHHhhc----cCCeEEEEe
Confidence 887776 35567777778888876654 457899999999997553221111 12223333333 346778888
Q ss_pred CCCcc-----ccchhhcCCCCCccccCCCCCCHHHHHHHH
Q 002045 527 TNRVD-----AIDGALRRPGRFDREFNFPLPGCEARAEIL 561 (976)
Q Consensus 527 tn~~~-----~ld~aL~r~gRf~~~i~~~~P~~~er~~Il 561 (976)
||.+. .+++++.+ ||. .+.|+.|+.+++.+||
T Consensus 158 ~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 158 TTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred CCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 88876 68899999 897 6899999999998876
No 108
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.60 E-value=1e-14 Score=154.11 Aligned_cols=192 Identities=20% Similarity=0.202 Sum_probs=141.1
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCc----------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQK---------- 443 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~---------- 443 (976)
....|++++|.+.+++.|..++... ..+..++|+||||||||++++++++.+......
T Consensus 18 ~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (250)
T 1njg_A 18 RPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 85 (250)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHH
T ss_pred CCccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 3456889999999999998887541 334579999999999999999999988643210
Q ss_pred ---------EEEEEecchhHHhhhHhHHHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHH
Q 002045 444 ---------VSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (976)
Q Consensus 444 ---------~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~----~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~ 510 (976)
..++.+..... .....+..++..+. ...+.||||||+|.+. ...+..|+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~-----------~~~~~~l~~ 148 (250)
T 1njg_A 86 CREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFNALLK 148 (250)
T ss_dssp HHHHHTTCCSSEEEEETTCG------GGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC-----------HHHHHHHHH
T ss_pred HHHHhccCCcceEEecCccc------ccHHHHHHHHHHhhhchhcCCceEEEEECccccc-----------HHHHHHHHH
Confidence 01222222110 11223344444332 2347899999999873 335566777
Q ss_pred HhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 002045 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (976)
Q Consensus 511 ~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~ 590 (976)
.++.. ...+++|++|+.+..+++.+.+ |+ ..+.|++++.++..+++..++...+..++.+.+..++..+.| +++
T Consensus 149 ~l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~ 222 (250)
T 1njg_A 149 TLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLR 222 (250)
T ss_dssp HHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHH
T ss_pred HHhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHH
Confidence 77643 4568888888888889999988 65 689999999999999999999887788888888999999977 788
Q ss_pred HHHHHHHHHH
Q 002045 591 DLKALCTEAA 600 (976)
Q Consensus 591 dI~~l~~~A~ 600 (976)
.+.+++..|.
T Consensus 223 ~~~~~~~~~~ 232 (250)
T 1njg_A 223 DALSLTDQAI 232 (250)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888764
No 109
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.60 E-value=3.6e-15 Score=165.07 Aligned_cols=209 Identities=20% Similarity=0.210 Sum_probs=146.5
Q ss_pred cccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHh---
Q 002045 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS--- 456 (976)
Q Consensus 380 ~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~--- 456 (976)
.|+|++.+++.|...+..... .-...-.+..++||+||||||||++|+++|..+.... .+++.++++.+..
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~----~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~--~~~~~~~~~~~~~~~~ 91 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARA----GLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE--EAMIRIDMTEYMEKHA 91 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHH----TCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCG--GGEEEEEGGGCCSTTH
T ss_pred hcCCHHHHHHHHHHHHHHHhc----CCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCC--cceEEeeccccccccc
Confidence 588999999999888754210 0000113345899999999999999999999986433 3466677765432
Q ss_pred --hhHhHHHH-----HHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCC---------CCc
Q 002045 457 --KWVGEAER-----QLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS---------RGQ 520 (976)
Q Consensus 457 --~~~g~~~~-----~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~---------~~~ 520 (976)
.++|.... ....+.........+||||||+|.+. ..++..|+..|+.... ..+
T Consensus 92 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~-----------~~~~~~Ll~~le~~~~~~~~~~~~~~~~ 160 (311)
T 4fcw_A 92 VSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAH-----------PDVFNILLQMLDDGRLTDSHGRTVDFRN 160 (311)
T ss_dssp HHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSC-----------HHHHHHHHHHHHHSEEECTTSCEEECTT
T ss_pred HHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcC-----------HHHHHHHHHHHhcCEEEcCCCCEEECCC
Confidence 22211000 00122233334445799999999883 4567778888764321 136
Q ss_pred EEEEecCCC--------------------------ccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcC------
Q 002045 521 VVLIGATNR--------------------------VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW------ 568 (976)
Q Consensus 521 vivI~atn~--------------------------~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~------ 568 (976)
++||+|||. ...++++|.+ ||+..+.|++|+.+++..|++.++...
T Consensus 161 ~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~ 238 (311)
T 4fcw_A 161 TVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAE 238 (311)
T ss_dssp EEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHT
T ss_pred cEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 789999998 4567888888 999999999999999999999877652
Q ss_pred ---CCCCCHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHhh
Q 002045 569 ---KQPPSRELKSELAASCV--GYCGADLKALCTEAAIRAFREK 607 (976)
Q Consensus 569 ---~~~~~~~~l~~lA~~t~--G~s~~dI~~l~~~A~~~a~~~~ 607 (976)
...++.++++.|+...- ..+.++|.+++..+...++.+.
T Consensus 239 ~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~ 282 (311)
T 4fcw_A 239 KRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQK 282 (311)
T ss_dssp TTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHH
T ss_pred CCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHH
Confidence 34578888899998765 5778999999998888776543
No 110
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.60 E-value=3.8e-15 Score=163.87 Aligned_cols=203 Identities=6% Similarity=0.078 Sum_probs=143.7
Q ss_pred ccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC-----CcEEEEEecchhHH
Q 002045 381 IGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYMRKGADVL 455 (976)
Q Consensus 381 i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~~~~~~l~ 455 (976)
|.|.++.+..|..++... +.-..+.++||+||||||||++++++++++.... ..+.++.++|..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~---------i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDS---------LMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHH---------HHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHH---------hcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 678888888887665432 2235678999999999999999999999996432 24678888885432
Q ss_pred h----------hhH------hHHHHHHHHHHHHH--HhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCC
Q 002045 456 S----------KWV------GEAERQLKLLFEEA--QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS 517 (976)
Q Consensus 456 ~----------~~~------g~~~~~l~~~f~~a--~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~ 517 (976)
+ .+. +.+...+..+|..+ ....++||||||+|.|. ...++..|+.+.. ..
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~----------~q~~L~~l~~~~~--~~ 160 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL----------SEKILQYFEKWIS--SK 160 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC----------CTHHHHHHHHHHH--CS
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh----------cchHHHHHHhccc--cc
Confidence 2 111 22445677777764 34567899999999997 1346667776654 34
Q ss_pred CCcEEEEecCCCccc----cchhhcCCCCCc-cccCCCCCCHHHHHHHHHHHHhcCCC----------------------
Q 002045 518 RGQVVLIGATNRVDA----IDGALRRPGRFD-REFNFPLPGCEARAEILDIHTRKWKQ---------------------- 570 (976)
Q Consensus 518 ~~~vivI~atn~~~~----ld~aL~r~gRf~-~~i~~~~P~~~er~~Il~~~l~~~~~---------------------- 570 (976)
..+++||+++|..+. |++++++ ||. .+|.|++|+.++..+|++..+.....
T Consensus 161 ~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~ 238 (318)
T 3te6_A 161 NSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQ 238 (318)
T ss_dssp SCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC----
T ss_pred CCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccc
Confidence 567899999988754 5666666 785 68999999999999999988766421
Q ss_pred -------------CCCHHHHHHHHHH---ccCCCHHHHHHHHHHHHHHHHHhh
Q 002045 571 -------------PPSRELKSELAAS---CVGYCGADLKALCTEAAIRAFREK 607 (976)
Q Consensus 571 -------------~~~~~~l~~lA~~---t~G~s~~dI~~l~~~A~~~a~~~~ 607 (976)
.+++++++.+|+. ..| ..+..-++|+.|+..+-.+.
T Consensus 239 ~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~G-D~R~Al~ilr~A~~~ae~e~ 290 (318)
T 3te6_A 239 NQKIPDNVIVINHKINNKITQLIAKNVANVSG-STEKAFKICEAAVEISKKDF 290 (318)
T ss_dssp ----CTTEEEECEECCHHHHHHHHHHHHHHHC-SHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccCHHHHHHHHHHHHhhCC-hHHHHHHHHHHHHHHHHHHH
Confidence 2577888888774 344 33444566777777776543
No 111
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.59 E-value=8.7e-15 Score=197.63 Aligned_cols=332 Identities=15% Similarity=0.139 Sum_probs=173.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhHhHHHHHHHHHHHHHH---------------hc
Q 002045 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ---------------RN 476 (976)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~---------------~~ 476 (976)
..++|||+||||||||++|+.+.... . ...++.++.+...+. ..+...+.... .+
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~--~--~~~~~~infsa~ts~------~~~~~~i~~~~~~~~~~~g~~~~P~~~g 1335 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNS--S--LYDVVGINFSKDTTT------EHILSALHRHTNYVTTSKGLTLLPKSDI 1335 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSC--S--SCEEEEEECCTTCCH------HHHHHHHHHHBCCEEETTTEEEEEBSSS
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcC--C--CCceEEEEeecCCCH------HHHHHHHHHHhhhccccCCccccCCCCC
Confidence 35799999999999999996554432 1 244555555443321 12233333220 12
Q ss_pred CCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCC-C-------CcEEEEecCCCcc-----ccchhhcCCCCC
Q 002045 477 QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS-R-------GQVVLIGATNRVD-----AIDGALRRPGRF 543 (976)
Q Consensus 477 ~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~-~-------~~vivI~atn~~~-----~ld~aL~r~gRf 543 (976)
.++||||||++.... ...+.+....++.+++.. .++.. . .++.+|+|||++. .|+++|+| ||
T Consensus 1336 k~~VlFiDEinmp~~--d~yg~q~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf 1410 (2695)
T 4akg_A 1336 KNLVLFCDEINLPKL--DKYGSQNVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA 1410 (2695)
T ss_dssp SCEEEEEETTTCSCC--CSSSCCHHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE
T ss_pred ceEEEEecccccccc--cccCchhHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee
Confidence 357999999986433 222333334444444421 11111 1 2589999999995 69999999 88
Q ss_pred ccccCCCCCCHHHHHHHHHHHHhcCCCCC-C------------HHHHHHHHHH-------ccCCCHHHHHHHHHHHHHH-
Q 002045 544 DREFNFPLPGCEARAEILDIHTRKWKQPP-S------------RELKSELAAS-------CVGYCGADLKALCTEAAIR- 602 (976)
Q Consensus 544 ~~~i~~~~P~~~er~~Il~~~l~~~~~~~-~------------~~~l~~lA~~-------t~G~s~~dI~~l~~~A~~~- 602 (976)
.+|+++.|+.+++..|+..++..+-... + .+++..+... .--|+.+||..+++-....
T Consensus 1411 -~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll~~~ 1489 (2695)
T 4akg_A 1411 -AILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYTAI 1489 (2695)
T ss_dssp -EEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHHHHH
T ss_pred -eEEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHHhcC
Confidence 7899999999999999998876532110 0 0111222211 1246788888777643322
Q ss_pred ------------------HHHhhCCccccCcccccccccceeEeehhhhhccc---ccccccccccccccCCCcccch--
Q 002045 603 ------------------AFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMS---TITPAAHRGATVHSRPLSLVVA-- 659 (976)
Q Consensus 603 ------------------a~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~---~i~p~~~r~~~~~~~~~~~~~i-- 659 (976)
+.+-..+++....+......--..+...+|..... ...|.. ...--...+..+
T Consensus 1490 ~~~~~~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~~l~~~~~~~f~~~~~~~~~~~~~~----f~df~~~~Y~~v~~ 1565 (2695)
T 4akg_A 1490 NTGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDKYLPNQDLGNISSTSLL----FSGLLSLDFKEVNK 1565 (2695)
T ss_dssp HTSSCCCHHHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHHHHSCCSCCCCCSTTTCC----EESSSSSSCEECCH
T ss_pred chhhhccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccchhhhccCCce----eeecCCCcceecCH
Confidence 12222222221111111000000000111110000 000000 000000012222
Q ss_pred hhhHHHHHHHhhhhccc---CCCCCCchHHH------hhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcCC
Q 002045 660 PCLQRHLQKAMNYISDI---FPPLGMSSELT------KLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKF 730 (976)
Q Consensus 660 ~~l~~~l~~~~~~l~~i---~~~~~~~~~~~------~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~ 730 (976)
..+...+++.+..-... ...+-....+. ++... | +.++||+|.+||||++|++..|+.. ++
T Consensus 1566 ~~l~~~l~~~l~~yn~~~~~m~LVlF~dai~Hi~RI~Ril~~------p---~G~~LLvGvgGsGkqSltrLaa~i~-~~ 1635 (2695)
T 4akg_A 1566 TDLVNFIEERFKTFCDEELEVPMVIHESMVDHILRIDRALKQ------V---QGHMMLIGASRTGKTILTRFVAWLN-GL 1635 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCCCCCCHHHHHHHHHHHHHHHS------S---SEEEEEECTTTSCHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHHHHHhhcCCceeeeHHHHHHHHHHHHHHHcC------C---CCCEEEECCCCCcHHHHHHHHHHHh-CC
Confidence 22333333332221111 11111222222 22111 1 3479999999999999999999997 88
Q ss_pred CeeecCCcccccCCCCCChHHHHHHHHHHHHh-cCCceEeccccchh
Q 002045 731 PVHSLGLPALLSDPSAKTPEEALVHIFGEARR-TTPSILYIPQFNLW 776 (976)
Q Consensus 731 ~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~-~~p~ilfiDEid~l 776 (976)
.++.+... .+|...+..+.++.++..|-. ..|.|++|++.+-.
T Consensus 1636 ~~fqi~~~---~~Y~~~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi~ 1679 (2695)
T 4akg_A 1636 KIVQPKIH---RHSNLSDFDMILKKAISDCSLKESRTCLIIDESNIL 1679 (2695)
T ss_dssp EEECCCCC---TTCCHHHHHHHHHHHHHHHHHSCCCEEEEEETTTCC
T ss_pred eeEEEEee---CCCCHHHHHHHHHHHHHHcCCCCCceEEEEeccccc
Confidence 89988744 345445667889999988854 55677778777653
No 112
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.59 E-value=2.2e-17 Score=193.06 Aligned_cols=139 Identities=19% Similarity=0.206 Sum_probs=103.0
Q ss_pred CCceeeccCCCCcHhhHHHHHHHhhcC--CCeeecCCcccccCCCCCChHHHHHHHHHHH---HhcCCceEeccccchhH
Q 002045 703 RPRLLLCGSEGTGVDHLGPAILHELEK--FPVHSLGLPALLSDPSAKTPEEALVHIFGEA---RRTTPSILYIPQFNLWW 777 (976)
Q Consensus 703 ~~~~Ll~G~pGtGKT~lA~aia~~l~~--~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a---~~~~p~ilfiDEid~l~ 777 (976)
+.++||+||||||||++|+++|+++ + .+|+.++++.++++| .|+++. ++.+|..| +...||||||||||.++
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l-~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~ 139 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQEL-GSKVPFCPMVGSEVYSTE-IKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELT 139 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH-CTTSCEEEEEGGGGCCSS-SCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEE
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHh-CCCceEEEEeHHHHHHHh-hhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcc
Confidence 4689999999999999999999998 5 899999999999887 788887 99999999 78889999999999998
Q ss_pred HHHHHH--------H------------------HHHHHHHHh--hCCCCCCEEEEEecCCCcccCcCCCCCCcCCc----
Q 002045 778 ENAHEQ--------L------------------RAVLLTLLE--ELPSHLPILLLGSSSVPLAEVEGDPSTVFPLR---- 825 (976)
Q Consensus 778 ~~~~~~--------~------------------~~~l~~ll~--~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r---- 825 (976)
...... . ...++..|+ .+.....|+|+||||++ +.+++ +.+|++|
T Consensus 140 ~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~i~attn~~-~~ld~--a~~r~~rfd~~ 216 (456)
T 2c9o_A 140 PCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAV-KRQGR--CDTYATEFDLE 216 (456)
T ss_dssp EC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTTCCTTEEEEEETTTCCE-EEEEE--ETTSCCTTSCS
T ss_pred cccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhccCCCCCEEEEEcCCCCc-ccCCh--hhcCCcccCcc
Confidence 432111 0 111333333 22345567777898888 88888 4444444
Q ss_pred cEEEecCCC--HHHHHHHHHHHHH
Q 002045 826 SVYQVEKPS--TEDRSLFLGRLIE 847 (976)
Q Consensus 826 ~~i~v~~P~--~~er~~i~~~~l~ 847 (976)
..++++.|+ .++|.+||+.++.
T Consensus 217 ~~~~v~~p~~~~~~R~~il~~~~~ 240 (456)
T 2c9o_A 217 AEEYVPLPKGDVHKKKEIIQDVTL 240 (456)
T ss_dssp SSSEECCCCSCSEEEEEEEEEEEH
T ss_pred eeEecCCCchhHHHHHHHHHHHHH
Confidence 245677774 4778888775543
No 113
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.59 E-value=1.6e-14 Score=160.73 Aligned_cols=194 Identities=23% Similarity=0.192 Sum_probs=139.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
.+.+|++++|++.+++.|..++.. ....++||+||||||||++|+++++.+........++.+++++
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVKT-------------GSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD 86 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHH-------------TCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC
T ss_pred CCCCHHHhhCCHHHHHHHHHHHHc-------------CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc
Confidence 456799999999999999887754 1223699999999999999999999986444344566677655
Q ss_pred HHhhhHhHHHHHHHHHHHHH--HhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCcc
Q 002045 454 VLSKWVGEAERQLKLLFEEA--QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVD 531 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a--~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~ 531 (976)
.... ......+..+.... ....+.||||||+|.+. ...+..|+..++.. ...+++|++||.+.
T Consensus 87 ~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~L~~~le~~--~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 87 ERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALT-----------QDAQQALRRTMEMF--SSNVRFILSCNYSS 151 (327)
T ss_dssp HHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC-----------HHHHHHHHHHHHHT--TTTEEEEEEESCGG
T ss_pred cCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC-----------HHHHHHHHHHHHhc--CCCCeEEEEeCCcc
Confidence 3221 11111111111100 01347799999999884 23456677777743 34677888888888
Q ss_pred ccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHH
Q 002045 532 AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEA 599 (976)
Q Consensus 532 ~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A 599 (976)
.+.+++.+ |+. .+.|++++.++...++...+...+..++.+.+..++..+.| +.+.+.+++..+
T Consensus 152 ~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~ 215 (327)
T 1iqp_A 152 KIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAA 215 (327)
T ss_dssp GSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred ccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 89999988 775 78999999999999999999888888889998999988866 455555555543
No 114
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.57 E-value=1.5e-14 Score=161.40 Aligned_cols=185 Identities=18% Similarity=0.185 Sum_probs=134.7
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
.+.+|++++|++.++..|..++.. -..+..+|++||||||||++|+++|+.++ ..++.+++++
T Consensus 21 rP~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~~~ 83 (324)
T 3u61_B 21 RPSTIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNGSD 83 (324)
T ss_dssp CCCSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEETTT
T ss_pred CCCCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEcccc
Confidence 456899999999999999988763 14456788889999999999999999985 7788888765
Q ss_pred HHhhhHhHHHHHHHHHHHHHHhc-----CCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCC
Q 002045 454 VLSKWVGEAERQLKLLFEEAQRN-----QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~~~-----~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn 528 (976)
.. ...++..+...... .+.||||||+|.|.+ ......|+..++.. ..+++||++||
T Consensus 84 ~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~~~~~~L~~~le~~--~~~~~iI~~~n 144 (324)
T 3u61_B 84 CK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------AESQRHLRSFMEAY--SSNCSIIITAN 144 (324)
T ss_dssp CC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------HHHHHHHHHHHHHH--GGGCEEEEEES
T ss_pred cC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------HHHHHHHHHHHHhC--CCCcEEEEEeC
Confidence 32 22333333333222 467999999998841 33556677777743 24678888999
Q ss_pred CccccchhhcCCCCCccccCCCCCCHHHHHHHHHH-------HHhcCCCCCCH-HHHHHHHHHccCCCHHHHHHHHHH
Q 002045 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDI-------HTRKWKQPPSR-ELKSELAASCVGYCGADLKALCTE 598 (976)
Q Consensus 529 ~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~-------~l~~~~~~~~~-~~l~~lA~~t~G~s~~dI~~l~~~ 598 (976)
.+..++++|.+ || .++.|+.|+.+++.+|+.. .+...++.+++ +.+..++..+.|... .+.+++..
T Consensus 145 ~~~~l~~~l~s--R~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R-~a~~~L~~ 218 (324)
T 3u61_B 145 NIDGIIKPLQS--RC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFR-KTIGELDS 218 (324)
T ss_dssp SGGGSCTTHHH--HS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTT-HHHHHHHH
T ss_pred CccccCHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHH-HHHHHHHH
Confidence 99999999999 88 4799999999987666543 33445667777 888899998776443 33344443
No 115
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.57 E-value=1.7e-15 Score=163.08 Aligned_cols=79 Identities=30% Similarity=0.407 Sum_probs=73.9
Q ss_pred hHhhhhhhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 898 RLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 898 eLr~~L~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
.|+..|..++..+..++.+++|..||++..+|+|+.+|++||||+||++||.++.|.++.+|++||.|||+||++||++
T Consensus 14 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 92 (265)
T 3uv5_A 14 TLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGP 92 (265)
T ss_dssp HHHHHHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCCchhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCCC
Confidence 3555667788888889999999999999999999999999999999999999999999999999999999999999985
No 116
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.57 E-value=9.3e-15 Score=162.05 Aligned_cols=194 Identities=24% Similarity=0.175 Sum_probs=138.7
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
.+.+|++++|++.+++.|..++.. ....++||+||||||||++|+++++.+........++.+++++
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 78 (319)
T 2chq_A 12 RPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (319)
T ss_dssp SCSSGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTS
T ss_pred CCCCHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcc
Confidence 456899999999999988776542 1223499999999999999999999985444445566677665
Q ss_pred HHhhhHhHHHHHHHHHHHHH--HhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCcc
Q 002045 454 VLSKWVGEAERQLKLLFEEA--QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVD 531 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a--~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~ 531 (976)
..+. ......+..+.... ....+.||||||+|.+. ......|+..++. ....+++|++||.+.
T Consensus 79 ~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~L~~~le~--~~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 79 ERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALT-----------ADAQAALRRTMEM--YSKSCRFILSCNYVS 143 (319)
T ss_dssp TTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC-----------HHHHHTTGGGTSS--SSSSEEEEEEESCGG
T ss_pred ccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC-----------HHHHHHHHHHHHh--cCCCCeEEEEeCChh
Confidence 3221 11111111111000 01347899999999884 2345567777764 345678888899999
Q ss_pred ccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHH
Q 002045 532 AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEA 599 (976)
Q Consensus 532 ~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A 599 (976)
.+.+++.+ |+. .+.|++|+.+++.+++...+...+..++.+.+..++..+.| +.+.+.+++..+
T Consensus 144 ~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~ 207 (319)
T 2chq_A 144 RIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGA 207 (319)
T ss_dssp GSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHH
T ss_pred hcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 99999998 774 89999999999999999999988888899998999977765 445555555444
No 117
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.56 E-value=9.9e-15 Score=181.37 Aligned_cols=205 Identities=20% Similarity=0.205 Sum_probs=148.4
Q ss_pred ccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhh
Q 002045 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKW 458 (976)
Q Consensus 379 ~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~ 458 (976)
..|+|++.++..|...+...... ....-.+..++||+||||||||++|+++|+.+... ..+|+.++++.+...+
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~----~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~~~~~~ 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAG----LKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKH 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTT----CSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGGGCSSC
T ss_pred CcCcChHHHHHHHHHHHHHHHcc----cCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechhccccc
Confidence 46899999999998887652100 00011222379999999999999999999998543 3578899999887765
Q ss_pred HhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC---------CCCcEEEEecCCC
Q 002045 459 VGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD---------SRGQVVLIGATNR 529 (976)
Q Consensus 459 ~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~---------~~~~vivI~atn~ 529 (976)
... ...++..+....++|||||||+.+ ...+++.|+..|+... ...+++||+|||.
T Consensus 565 ~~~----~~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 565 STS----GGQLTEKVRRKPYSVVLLDAIEKA-----------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp CCC-------CHHHHHHCSSSEEEEECGGGS-----------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ccc----cchhhHHHHhCCCeEEEEeCcccc-----------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 443 122334445556789999999987 3567888888887522 2236789999996
Q ss_pred ccc------------cchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcC---------CCCCCHHHHHHHHHH--ccC
Q 002045 530 VDA------------IDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW---------KQPPSRELKSELAAS--CVG 586 (976)
Q Consensus 530 ~~~------------ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~---------~~~~~~~~l~~lA~~--t~G 586 (976)
+.. +.|+|.+ ||+.+|.|++|+.+++..|+..++... .+.+++++++.|+.. ...
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~ 707 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLE 707 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTT
T ss_pred ChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCC
Confidence 433 6788888 999999999999999999998877542 345788888889874 345
Q ss_pred CCHHHHHHHHHHHHHHHHHh
Q 002045 587 YCGADLKALCTEAAIRAFRE 606 (976)
Q Consensus 587 ~s~~dI~~l~~~A~~~a~~~ 606 (976)
+..++|++++..+....+.+
T Consensus 708 ~~~R~L~~~i~~~v~~~l~~ 727 (758)
T 3pxi_A 708 YGARPLRRAIQKHVEDRLSE 727 (758)
T ss_dssp TTTTTHHHHHHHHTHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHH
Confidence 67789999998887766654
No 118
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.56 E-value=6.1e-15 Score=174.96 Aligned_cols=194 Identities=19% Similarity=0.202 Sum_probs=132.8
Q ss_pred CCCCcccccChHHHHHHHHHHHHcc-cCChhHHhhcCC---CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEe
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFP-LLYPDFFASYHI---TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR 449 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~p-l~~~~~~~~~~~---~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~ 449 (976)
.+.+|++|+|++.+++.|.+++... ...+..|...|. .++.++||+||||||||++|+++|+.++ ..++.+
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~-----~~~i~i 108 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG-----YDILEQ 108 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT-----CEEEEE
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC-----CCEEEE
Confidence 4568999999999999999988641 111222333333 2568999999999999999999999984 678888
Q ss_pred cchhHHhhhHhHHHH-------HHHHHHHHH-----HhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCC
Q 002045 450 KGADVLSKWVGEAER-------QLKLLFEEA-----QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS 517 (976)
Q Consensus 450 ~~~~l~~~~~g~~~~-------~l~~~f~~a-----~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~ 517 (976)
+++++.........- .+..+|..+ ....++||||||+|.|..... ..+..|+..++. .
T Consensus 109 n~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~--------~~l~~L~~~l~~--~ 178 (516)
T 1sxj_A 109 NASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR--------GGVGQLAQFCRK--T 178 (516)
T ss_dssp CTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST--------THHHHHHHHHHH--C
T ss_pred eCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH--------HHHHHHHHHHHh--c
Confidence 887765443221110 012233322 124578999999999975321 124456666653 2
Q ss_pred CCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccC
Q 002045 518 RGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVG 586 (976)
Q Consensus 518 ~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G 586 (976)
...+++|+++.....+. .+. |+...|.|+.|+.+++.++|...+...+..++.+.+..|+..+.|
T Consensus 179 ~~~iIli~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G 243 (516)
T 1sxj_A 179 STPLILICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG 243 (516)
T ss_dssp SSCEEEEESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT
T ss_pred CCCEEEEEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 33456665554433444 344 455789999999999999999988877777888888999988866
No 119
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=2.7e-14 Score=158.55 Aligned_cols=191 Identities=16% Similarity=0.107 Sum_probs=140.1
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
.+.+|++++|++.+++.|..++.. + ..+ ++||+||||||||++|+++++.+........++.+++.+
T Consensus 16 ~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 82 (323)
T 1sxj_B 16 RPQVLSDIVGNKETIDRLQQIAKD-----------G-NMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD 82 (323)
T ss_dssp CCSSGGGCCSCTHHHHHHHHHHHS-----------C-CCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS
T ss_pred CCCCHHHHHCCHHHHHHHHHHHHc-----------C-CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc
Confidence 456789999999999999888754 1 223 499999999999999999999985443345566677654
Q ss_pred HHhhhHhHHHHHHHHHHHHHH-------hcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEec
Q 002045 454 VLSKWVGEAERQLKLLFEEAQ-------RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGA 526 (976)
Q Consensus 454 l~~~~~g~~~~~l~~~f~~a~-------~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~a 526 (976)
..+ ...++.++.... ...+.||||||+|.+. ......|+..++.. ...+++|++
T Consensus 83 ~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~-----------~~~~~~L~~~le~~--~~~~~~il~ 143 (323)
T 1sxj_B 83 DRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT-----------AGAQQALRRTMELY--SNSTRFAFA 143 (323)
T ss_dssp CCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC-----------HHHHHTTHHHHHHT--TTTEEEEEE
T ss_pred ccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCC-----------HHHHHHHHHHHhcc--CCCceEEEE
Confidence 321 123344444433 2347899999999884 23355677777643 346777788
Q ss_pred CCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 002045 527 TNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAA 600 (976)
Q Consensus 527 tn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~ 600 (976)
||.+..+.+++.+ |+. .+.|++|+.+++.+++...+...+..++.+.+..++..+.|. .+.+.+++..++
T Consensus 144 ~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~a~~~l~~~~ 213 (323)
T 1sxj_B 144 CNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGD-MRQAINNLQSTV 213 (323)
T ss_dssp ESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred eCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHH
Confidence 8888899999998 764 899999999999999999988777788888889999988764 444445554443
No 120
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.55 E-value=3e-15 Score=152.43 Aligned_cols=73 Identities=29% Similarity=0.408 Sum_probs=66.9
Q ss_pred hhhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhC--CCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 903 LRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDS--GHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 903 L~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~--~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
+..+|..+..++.+++|..||+. .+|+|+++|++||||+||++||++ +.|.|+++|++||+|||+||++||++
T Consensus 86 c~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~~yN~~ 160 (184)
T 3o36_A 86 CERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEP 160 (184)
T ss_dssp HHHHHHHHHHSTTCHHHHSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHhchhhhhhcccccc-CCCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 45567777778889999999996 489999999999999999999998 78999999999999999999999975
No 121
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.55 E-value=1.7e-14 Score=162.46 Aligned_cols=224 Identities=22% Similarity=0.233 Sum_probs=142.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc----CCc------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA----GQK------ 443 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~----~~~------ 443 (976)
+..+|++|+|.+.++..+...+.. ....++||+||||||||++|+++++.+... +..
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 567899999999987765444332 123469999999999999999999987521 000
Q ss_pred ------------------EEEEEecchhHHhhhHhHHHHHHHHHHHHH---------HhcCCcEEEEccccccCCCCCCh
Q 002045 444 ------------------VSFYMRKGADVLSKWVGEAERQLKLLFEEA---------QRNQPSIIFFDEIDGLAPVRSSK 496 (976)
Q Consensus 444 ------------------~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a---------~~~~p~VL~iDEid~L~~~r~~~ 496 (976)
.+++.+.........+|... +...+... ....++|||||||+.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~------ 157 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDECNLLE------ 157 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC------
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCEEEEeChhhCC------
Confidence 01221111100111122100 01111111 11235699999999884
Q ss_pred hhhhHHHHHHHHHHHhhcc----CC-------CCcEEEEecCCCcc-ccchhhcCCCCCccccCCCCC-CHHHHHHHHHH
Q 002045 497 QEQIHNSIVSTLLALMDGL----DS-------RGQVVLIGATNRVD-AIDGALRRPGRFDREFNFPLP-GCEARAEILDI 563 (976)
Q Consensus 497 ~~~~~~~~~~~Ll~~ld~~----~~-------~~~vivI~atn~~~-~ld~aL~r~gRf~~~i~~~~P-~~~er~~Il~~ 563 (976)
..++..|+..|+.- .. ...++||++||... .++++|++ ||...+.++.| +.+++.+|++.
T Consensus 158 -----~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 158 -----DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp -----HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 34556677776631 11 12688999999744 79999999 99888999999 67777788865
Q ss_pred HH-----------------------------hcCCCCCCHHHHHHHHHHccCC---CHHHHHHHHHHHHHHHHHhhCCcc
Q 002045 564 HT-----------------------------RKWKQPPSRELKSELAASCVGY---CGADLKALCTEAAIRAFREKYPQV 611 (976)
Q Consensus 564 ~l-----------------------------~~~~~~~~~~~l~~lA~~t~G~---s~~dI~~l~~~A~~~a~~~~~~~~ 611 (976)
.+ ....+.+++++++.|+....+. +.+.+.++++.|...|..+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~--- 307 (350)
T 1g8p_A 231 RDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGA--- 307 (350)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCC---
Confidence 21 1123467888888888776653 568899999888877765432
Q ss_pred ccCcccccccccceeEeehhhhhccccccc
Q 002045 612 YTSDDKFLIDVDSVTVEKYHFIEAMSTITP 641 (976)
Q Consensus 612 ~~~~~~~~~~~~~~~it~~df~~al~~i~p 641 (976)
..|+.+|+..++..+..
T Consensus 308 -------------~~v~~~~v~~a~~~~l~ 324 (350)
T 1g8p_A 308 -------------TAVGRDHLKRVATMALS 324 (350)
T ss_dssp -------------SBCCHHHHHHHHHHHHG
T ss_pred -------------CcCCHHHHHHHHHHHHh
Confidence 13677788777765543
No 122
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.55 E-value=4.4e-15 Score=161.73 Aligned_cols=78 Identities=31% Similarity=0.413 Sum_probs=73.1
Q ss_pred HhhhhhhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 899 LRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 899 Lr~~L~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
+...+..++..+..++.+++|..||++..+|+|+++|++||||+||++||+++.|.++.+|.+||.|||+||++||++
T Consensus 48 l~~~~~~il~~l~~~~~a~~F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 125 (292)
T 3aad_A 48 LSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGP 125 (292)
T ss_dssp HHHHHHHHHHHHSSSTTCGGGSSSCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHhCCcchhhcCCCCchhcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcCC
Confidence 455667788888889999999999999999999999999999999999999999999999999999999999999985
No 123
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=2.3e-14 Score=161.38 Aligned_cols=197 Identities=18% Similarity=0.157 Sum_probs=138.1
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-CCcEEEEEecch
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYMRKGA 452 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~~~~~ 452 (976)
.+.+|++|+|++++++.|..++.. ....++||+||||||||++|+++|+.+... .....++.++++
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 98 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKS-------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS 98 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTC-------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhc-------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc
Confidence 567899999999999999887643 122359999999999999999999998532 112345566665
Q ss_pred hHHhhhHhHHHHHHHHHHHH------------HHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCc
Q 002045 453 DVLSKWVGEAERQLKLLFEE------------AQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQ 520 (976)
Q Consensus 453 ~l~~~~~g~~~~~l~~~f~~------------a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~ 520 (976)
+... .+.....+..+... .....+.||||||+|.+. ......|+..|+... ..
T Consensus 99 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~-----------~~~~~~Ll~~le~~~--~~ 163 (353)
T 1sxj_D 99 DERG--ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT-----------ADAQSALRRTMETYS--GV 163 (353)
T ss_dssp SCCC--HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC-----------HHHHHHHHHHHHHTT--TT
T ss_pred cccc--hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC-----------HHHHHHHHHHHHhcC--CC
Confidence 4311 11111111111110 001235699999999884 234566777777543 34
Q ss_pred EEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 002045 521 VVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAA 600 (976)
Q Consensus 521 vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~ 600 (976)
+.+|++||.+..+.+++++ |+. .+.|++|+.++...++...+...+..++.+.+..++..+.|. .+.+.+++..++
T Consensus 164 ~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~-~r~~~~~l~~~~ 239 (353)
T 1sxj_D 164 TRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGD-LRRGITLLQSAS 239 (353)
T ss_dssp EEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSC-HHHHHHHHHHTH
T ss_pred ceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHH
Confidence 5666678888899999998 775 789999999999999999998888888999999999998874 555556666555
Q ss_pred HH
Q 002045 601 IR 602 (976)
Q Consensus 601 ~~ 602 (976)
..
T Consensus 240 ~~ 241 (353)
T 1sxj_D 240 KG 241 (353)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 124
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.54 E-value=5.3e-15 Score=159.23 Aligned_cols=69 Identities=32% Similarity=0.532 Sum_probs=65.6
Q ss_pred ccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 908 NRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 908 ~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
..+..++.+++|..||++..+|+|+.+|++||||+||++||.++.|.|+++|.+||.|||+||++||++
T Consensus 147 ~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~ 215 (265)
T 3uv5_A 147 QKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGP 215 (265)
T ss_dssp HTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHhhhhhHHHhCCCChhHhCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 346678889999999999999999999999999999999999999999999999999999999999985
No 125
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.54 E-value=3.3e-14 Score=176.81 Aligned_cols=200 Identities=21% Similarity=0.282 Sum_probs=149.6
Q ss_pred ccccChHHHHHHHHHHHHcccCChhHHhhcCC----CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhH
Q 002045 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHI----TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (976)
Q Consensus 379 ~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~----~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l 454 (976)
..|+|++.++..|..++.. ...|+ .+..++||+||||||||++|+++|+.++ .+|+.++++++
T Consensus 458 ~~v~g~~~~~~~l~~~i~~--------~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~ 524 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKM--------ARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEY 524 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHH--------HHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGC
T ss_pred hhccCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhh
Confidence 3589999999998887754 12233 2345899999999999999999999984 67888888876
Q ss_pred Hhh------------hHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCC-----
Q 002045 455 LSK------------WVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS----- 517 (976)
Q Consensus 455 ~~~------------~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~----- 517 (976)
... |+|..+. ..+...+....++|||||||+.+ ...+++.|+..|+...-
T Consensus 525 ~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~~~~~~~~g 591 (758)
T 1r6b_X 525 MERHTVSRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNILLQVMDNGTLTDNNG 591 (758)
T ss_dssp SSSSCCSSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEEETTT
T ss_pred cchhhHhhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCcccc-----------CHHHHHHHHHHhcCcEEEcCCC
Confidence 542 5554332 22344445566789999999987 35688888888874211
Q ss_pred ----CCcEEEEecCCCcc-------------------------ccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcC
Q 002045 518 ----RGQVVLIGATNRVD-------------------------AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW 568 (976)
Q Consensus 518 ----~~~vivI~atn~~~-------------------------~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~ 568 (976)
-.+++||+|||... .+.++|++ ||+.+|.|++|+.+++..|+..++...
T Consensus 592 ~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~ 669 (758)
T 1r6b_X 592 RKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVEL 669 (758)
T ss_dssp EEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHH
Confidence 14688999999743 57788888 999999999999999999999887632
Q ss_pred ---------CCCCCHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHh
Q 002045 569 ---------KQPPSRELKSELAASC--VGYCGADLKALCTEAAIRAFRE 606 (976)
Q Consensus 569 ---------~~~~~~~~l~~lA~~t--~G~s~~dI~~l~~~A~~~a~~~ 606 (976)
.+.+++++++.|+... ..+..+.+.++++.+...++.+
T Consensus 670 ~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~ 718 (758)
T 1r6b_X 670 QVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_dssp HHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHH
T ss_pred HHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHH
Confidence 3457888888888754 3456889999988888765554
No 126
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.53 E-value=2.1e-13 Score=152.79 Aligned_cols=213 Identities=18% Similarity=0.223 Sum_probs=148.4
Q ss_pred CCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHH
Q 002045 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVL 455 (976)
Q Consensus 376 ~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~ 455 (976)
.+|++++|.+.++..|...+... ...+ .++.+++|+|||||||||+++++|..++ ..+...++..+.
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~-------~~~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~-----~~~~~~sg~~~~ 88 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAA-------KMRG-EVLDHVLLAGPPGLGKTTLAHIIASELQ-----TNIHVTSGPVLV 88 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHH-------HHHT-CCCCCEEEESSTTSSHHHHHHHHHHHHT-----CCEEEEETTTCC
T ss_pred ccHHHccCcHHHHHHHHHHHHHH-------HhcC-CCCCeEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEechHhc
Confidence 47888999999888887766431 0011 3457899999999999999999999985 334444443321
Q ss_pred hhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCC----------------CC
Q 002045 456 SKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS----------------RG 519 (976)
Q Consensus 456 ~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~----------------~~ 519 (976)
. + ..+..++.. ....+|+||||+|.|.+ .+...|+..++.... -.
T Consensus 89 ~---~---~~l~~~~~~--~~~~~v~~iDE~~~l~~-----------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~ 149 (334)
T 1in4_A 89 K---Q---GDMAAILTS--LERGDVLFIDEIHRLNK-----------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQ 149 (334)
T ss_dssp S---H---HHHHHHHHH--CCTTCEEEEETGGGCCH-----------HHHHHHHHHHHTSCCCC---------------C
T ss_pred C---H---HHHHHHHHH--ccCCCEEEEcchhhcCH-----------HHHHHHHHHHHhcccceeeccCcccccccccCC
Confidence 1 1 112222221 23457999999998852 123334444432210 12
Q ss_pred cEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHH
Q 002045 520 QVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEA 599 (976)
Q Consensus 520 ~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A 599 (976)
.+.++++|+.+..|++++++ ||...+.|++|+.+++.+|++......+..++.+.+..||..+.| +++.+.++++.+
T Consensus 150 ~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~ 226 (334)
T 1in4_A 150 PFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRV 226 (334)
T ss_dssp CCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHH
T ss_pred CeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 46778899999999999999 998889999999999999999998888888889999999999887 567888888887
Q ss_pred HHHHHHhhCCccccCcccccccccceeEeehhhhhccccc
Q 002045 600 AIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (976)
Q Consensus 600 ~~~a~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~i 639 (976)
...|..... ..|+.+++..++..+
T Consensus 227 ~~~a~~~~~----------------~~It~~~v~~al~~~ 250 (334)
T 1in4_A 227 RDMLTVVKA----------------DRINTDIVLKTMEVL 250 (334)
T ss_dssp HHHHHHHTC----------------SSBCHHHHHHHHHHH
T ss_pred HHHHHHcCC----------------CCcCHHHHHHHHHHh
Confidence 766654322 125666666666553
No 127
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.52 E-value=8.4e-14 Score=155.75 Aligned_cols=209 Identities=21% Similarity=0.177 Sum_probs=140.6
Q ss_pred cccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecch-----
Q 002045 378 FDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA----- 452 (976)
Q Consensus 378 ~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~----- 452 (976)
+.+|+|++.++..+...+.. ..++||+||||||||++|+++|+.++ ..++.+++.
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~-----~~~~~i~~~~~~~~ 85 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMD-----LDFHRIQFTPDLLP 85 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTT-----CCEEEEECCTTCCH
T ss_pred ccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhC-----CCeEEEecCCCCCh
Confidence 45789999999888776543 25899999999999999999999885 344444442
Q ss_pred -hHHhhhHhHHHHHHHHHHHHHHhcC---CcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhcc---------CCCC
Q 002045 453 -DVLSKWVGEAERQLKLLFEEAQRNQ---PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGL---------DSRG 519 (976)
Q Consensus 453 -~l~~~~~g~~~~~l~~~f~~a~~~~---p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~---------~~~~ 519 (976)
+++........ ...|. ...+ .+||||||++.+. ...+..|+..|+.. ....
T Consensus 86 ~~l~g~~~~~~~---~~~~~--~~~g~l~~~vl~iDEi~~~~-----------~~~~~~Ll~~l~~~~~~~~g~~~~~~~ 149 (331)
T 2r44_A 86 SDLIGTMIYNQH---KGNFE--VKKGPVFSNFILADEVNRSP-----------AKVQSALLECMQEKQVTIGDTTYPLDN 149 (331)
T ss_dssp HHHHEEEEEETT---TTEEE--EEECTTCSSEEEEETGGGSC-----------HHHHHHHHHHHHHSEEEETTEEEECCS
T ss_pred hhcCCceeecCC---CCceE--eccCcccccEEEEEccccCC-----------HHHHHHHHHHHhcCceeeCCEEEECCC
Confidence 22211110000 00000 0011 2699999999873 34566677777632 1234
Q ss_pred cEEEEecCCCcc-----ccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcC----------------------CCCC
Q 002045 520 QVVLIGATNRVD-----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW----------------------KQPP 572 (976)
Q Consensus 520 ~vivI~atn~~~-----~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~----------------------~~~~ 572 (976)
.++||+|+|+.+ .++++|++ ||...+.++.|+.+++.+||+..+... .+.+
T Consensus 150 ~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~ 227 (331)
T 2r44_A 150 PFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTI 227 (331)
T ss_dssp SCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBC
T ss_pred CEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCC
Confidence 678888888654 28999999 998889999999999999999887653 3445
Q ss_pred CHHHHHHHHHHc-------------------cCCCHHHHHHHHHHHHHHHHHhhCCccccCcccccccccceeEeehhhh
Q 002045 573 SRELKSELAASC-------------------VGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFI 633 (976)
Q Consensus 573 ~~~~l~~lA~~t-------------------~G~s~~dI~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~it~~df~ 633 (976)
++++++.++... .|.+.+.+..+++.|...|...... .++.+|+.
T Consensus 228 ~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~----------------~v~~~dv~ 291 (331)
T 2r44_A 228 SESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRD----------------YVLPEDIK 291 (331)
T ss_dssp CHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCS----------------BCCHHHHH
T ss_pred CHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCC----------------CCCHHHHH
Confidence 666666665532 2568888888888877666654321 36777887
Q ss_pred hcccccc
Q 002045 634 EAMSTIT 640 (976)
Q Consensus 634 ~al~~i~ 640 (976)
.++..+.
T Consensus 292 ~~~~~vl 298 (331)
T 2r44_A 292 EVAYDIL 298 (331)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7776553
No 128
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.52 E-value=5.8e-15 Score=160.45 Aligned_cols=139 Identities=20% Similarity=0.294 Sum_probs=102.6
Q ss_pred CCceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHH----
Q 002045 703 RPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWE---- 778 (976)
Q Consensus 703 ~~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~---- 778 (976)
+.++||+||||||||++|+++|+.+ +.+++.+++++.+.++..+.....++.+|..+....++||||||||.+++
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~-~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~ 142 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEES-NFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPI 142 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH-TCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh-CCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCC
Confidence 3579999999999999999999997 78999998876554433333346788899999888899999999999943
Q ss_pred --HHHHHHHHHHHHHHhhCC-CCCCEEEEEecCCCcccCcC-CCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 779 --NAHEQLRAVLLTLLEELP-SHLPILLLGSSSVPLAEVEG-DPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 779 --~~~~~~~~~l~~ll~~~~-~~~~v~vi~ttn~~~~~Ld~-~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
..+..+++.|..+++... ....++||+|||.+ +.|++ .+..+|. .+ |..|+..+|.+|++.+..
T Consensus 143 ~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~-~~l~~~~l~~rf~--~~--i~~p~l~~r~~i~~i~~~ 210 (272)
T 1d2n_A 143 GPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRK-DVLQEMEMLNAFS--TT--IHVPNIATGEQLLEALEL 210 (272)
T ss_dssp TTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCH-HHHHHTTCTTTSS--EE--EECCCEEEHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCCh-hhcchhhhhcccc--eE--EcCCCccHHHHHHHHHHh
Confidence 345677777878777664 35688999999988 66765 2333332 34 455666667666665543
No 129
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.51 E-value=1.3e-14 Score=157.96 Aligned_cols=68 Identities=32% Similarity=0.536 Sum_probs=64.8
Q ss_pred cccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 909 RMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 909 ~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
.+..+..+++|..||++..+|+|+++|++||||+||++||+++.|.|+.+|.+||.|||+||++||++
T Consensus 181 ~l~~~~~s~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~ 248 (292)
T 3aad_A 181 KMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGP 248 (292)
T ss_dssp TGGGSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCT
T ss_pred hhhcCcchhHHHhcccccccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 45667889999999999999999999999999999999999999999999999999999999999985
No 130
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.51 E-value=1.2e-14 Score=150.63 Aligned_cols=73 Identities=29% Similarity=0.429 Sum_probs=67.3
Q ss_pred hhhhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhC---CCCCCHHHHHHHHHHHHHHHhhhcC
Q 002045 902 CLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDS---GHYVTCSAFLQDVDLIVTNAKVSTC 975 (976)
Q Consensus 902 ~L~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~---~~Y~~~~~f~~D~~li~~Na~~yn~ 975 (976)
.+..+|..+..++.+++|..||+. .+|+|+.+|++||||+||++||++ +.|.|+++|.+||+|||+||++||+
T Consensus 85 ~c~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na~~yN~ 160 (207)
T 3u5n_A 85 KCERLLLYLYCHELSIEFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNE 160 (207)
T ss_dssp HHHHHHHHHHTSTTCGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhhhhccCCh-hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHHHHHHCC
Confidence 345677777888899999999987 799999999999999999999997 7999999999999999999999996
No 131
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.51 E-value=5.6e-14 Score=142.50 Aligned_cols=156 Identities=24% Similarity=0.351 Sum_probs=112.8
Q ss_pred CCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC-----CcEEEEEec
Q 002045 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYMRK 450 (976)
Q Consensus 376 ~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~~~ 450 (976)
..|++++|.+..+..+.+.+.. ..+.++||+||||||||++|+++++.+.... ....++.++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred cccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 4688899999988888776543 3456899999999999999999999985421 135677777
Q ss_pred chhHHh--hhHhHHHHHHHHHHHHHHhc-CCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecC
Q 002045 451 GADVLS--KWVGEAERQLKLLFEEAQRN-QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (976)
Q Consensus 451 ~~~l~~--~~~g~~~~~l~~~f~~a~~~-~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~at 527 (976)
+..+.. .+.+.....+..++..+... .++||||||+|.+.+.+..... ...+...|...++ ...++||+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~--~~~~~~~l~~~~~----~~~~~ii~~~ 159 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEG--ALDAGNILKPMLA----RGELRCIGAT 159 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTT--SCCTHHHHHHHHH----TTCSCEEEEE
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccccc--chHHHHHHHHHHh----cCCeeEEEec
Confidence 777653 35666777788888777665 6789999999999755431111 1123333444444 3567888888
Q ss_pred CCcc-----ccchhhcCCCCCccccCCCCCC
Q 002045 528 NRVD-----AIDGALRRPGRFDREFNFPLPG 553 (976)
Q Consensus 528 n~~~-----~ld~aL~r~gRf~~~i~~~~P~ 553 (976)
|.+. .++++|++ ||.. +.++.|+
T Consensus 160 ~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 160 TVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp CHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred CHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 8765 58999999 9974 8888885
No 132
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.50 E-value=1.4e-13 Score=156.97 Aligned_cols=201 Identities=19% Similarity=0.161 Sum_probs=137.6
Q ss_pred cccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC-----C-cEEEEEecc
Q 002045 378 FDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----Q-KVSFYMRKG 451 (976)
Q Consensus 378 ~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~-~~~~~~~~~ 451 (976)
.++++|.+..++.|..++...+. ...+.+++|+||||||||++|+++++.+.... . ...++.+++
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 47899999999999887754211 14467999999999999999999999885431 1 366777776
Q ss_pred hhHH-------hhhHhHH------------HHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHH-HHHHHHH
Q 002045 452 ADVL-------SKWVGEA------------ERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSI-VSTLLAL 511 (976)
Q Consensus 452 ~~l~-------~~~~g~~------------~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~-~~~Ll~~ 511 (976)
.... ...+... ...+..++..+....+ ||||||+|.+..... ..+ +..|+..
T Consensus 90 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~-------~~~~l~~l~~~ 161 (384)
T 2qby_B 90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRG-------GDIVLYQLLRS 161 (384)
T ss_dssp HHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTT-------SHHHHHHHHTS
T ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCC-------CceeHHHHhcC
Confidence 6533 1111111 2223344443333333 999999998853210 122 3444433
Q ss_pred hhccCCCCcEEEEecCCCc---cccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHccC
Q 002045 512 MDGLDSRGQVVLIGATNRV---DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK--WKQPPSRELKSELAASCVG 586 (976)
Q Consensus 512 ld~~~~~~~vivI~atn~~---~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~--~~~~~~~~~l~~lA~~t~G 586 (976)
. .++.||++||.+ ..+++++.+ ||...+.|++|+.+++.+|+...+.. ....++.+.++.++..+.+
T Consensus 162 ~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~ 233 (384)
T 2qby_B 162 D------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAK 233 (384)
T ss_dssp S------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHT
T ss_pred C------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHh
Confidence 2 678888899886 568899888 88779999999999999999998863 2345677788888888872
Q ss_pred --CCHHHHHHHHHHHHHHH
Q 002045 587 --YCGADLKALCTEAAIRA 603 (976)
Q Consensus 587 --~s~~dI~~l~~~A~~~a 603 (976)
-..+.+.++|..|...+
T Consensus 234 ~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 234 EHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp TCCCHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHHh
Confidence 23456667777766443
No 133
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.50 E-value=1.3e-13 Score=156.56 Aligned_cols=192 Identities=20% Similarity=0.207 Sum_probs=140.2
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCc----------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQK---------- 443 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~---------- 443 (976)
.+.+|++++|++.+++.|...+.. + ..+..+||+||+|||||++|+++|+.+......
T Consensus 11 rp~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 78 (373)
T 1jr3_A 11 RPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 78 (373)
T ss_dssp CCCSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHH
T ss_pred CCCchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 345788999999999999888753 1 334578999999999999999999998643210
Q ss_pred ---------EEEEEecchhHHhhhHhHHHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHH
Q 002045 444 ---------VSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (976)
Q Consensus 444 ---------~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~----~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~ 510 (976)
..++.+++... .....++.++..+. ...+.||||||+|.|. ...+..|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~Ll~ 141 (373)
T 1jr3_A 79 CREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFNALLK 141 (373)
T ss_dssp HHHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC-----------HHHHHHHHH
T ss_pred HHHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhc-----------HHHHHHHHH
Confidence 01222222110 00112344454443 2346799999999883 234567778
Q ss_pred HhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 002045 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (976)
Q Consensus 511 ~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~ 590 (976)
.++. ....+++|++|+.+..+.+.+.+ |+ ..+.|++|+.++..+++...+...+..++.+.+..++..+.| +.+
T Consensus 142 ~le~--~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r 215 (373)
T 1jr3_A 142 TLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLR 215 (373)
T ss_dssp HHHS--CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHH
T ss_pred HHhc--CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHH
Confidence 7874 34578888888888888999988 76 689999999999999999999888888888888999999877 677
Q ss_pred HHHHHHHHHH
Q 002045 591 DLKALCTEAA 600 (976)
Q Consensus 591 dI~~l~~~A~ 600 (976)
.+.+++..+.
T Consensus 216 ~~~~~l~~~~ 225 (373)
T 1jr3_A 216 DALSLTDQAI 225 (373)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7778777664
No 134
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.50 E-value=2.9e-14 Score=157.69 Aligned_cols=138 Identities=12% Similarity=0.135 Sum_probs=106.5
Q ss_pred CCceeeccCCCCcHhhHHHHHHHhhcC------CCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchh
Q 002045 703 RPRLLLCGSEGTGVDHLGPAILHELEK------FPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLW 776 (976)
Q Consensus 703 ~~~~Ll~G~pGtGKT~lA~aia~~l~~------~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l 776 (976)
..++||+||||||||++|+++|+.+.. .+++.+++..+.+.+ .|.+...+..+|..+ .++||||||||.+
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~~~---~~~vl~iDEid~l 142 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQY-IGHTAPKTKEVLKRA---MGGVLFIDEAYYL 142 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSS-TTCHHHHHHHHHHHH---TTSEEEEETGGGS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhc-ccccHHHHHHHHHhc---CCCEEEEEChhhh
Confidence 346999999999999999999998632 379999999998776 688888898898877 4689999999998
Q ss_pred HHH-----HHHHHHHHHHHHHhhCCCCCCEEEEEecCCCc-c---cCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 777 WEN-----AHEQLRAVLLTLLEELPSHLPILLLGSSSVPL-A---EVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 777 ~~~-----~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~-~---~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
+.. ....+.+.|+.+|+.. ..+++||+|||.+. + .+++ +.+.++..++.|++|+.+++..||+.++.
T Consensus 143 ~~~~~~~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~~~~~~~~~~~~~--~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 143 YRPDNERDYGQEAIEILLQVMENN--RDDLVVILAGYADRMENFFQSNP--GFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp CCCC---CCTHHHHHHHHHHHHHC--TTTCEEEEEECHHHHHHHHHHST--THHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred ccCCCcccccHHHHHHHHHHHhcC--CCCEEEEEeCChHHHHHHHhhCH--HHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 632 2456667777777753 34678888887541 1 1345 33333337899999999999999999987
Q ss_pred H
Q 002045 848 A 848 (976)
Q Consensus 848 ~ 848 (976)
.
T Consensus 219 ~ 219 (309)
T 3syl_A 219 D 219 (309)
T ss_dssp H
T ss_pred H
Confidence 4
No 135
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.49 E-value=7.2e-15 Score=149.46 Aligned_cols=68 Identities=21% Similarity=0.212 Sum_probs=62.2
Q ss_pred hhhhccccccccccccccCCCCCCccchHHHhc--CCCCHHHHHHHHhCC---CCCCHHHHHHHHHHHHHHHhhhcC
Q 002045 904 RDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQ--NPMDLATLLQRVDSG---HYVTCSAFLQDVDLIVTNAKVSTC 975 (976)
Q Consensus 904 ~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~--~Pmdl~ti~~kl~~~---~Y~~~~~f~~D~~li~~Na~~yn~ 975 (976)
..+|..+..++.+|+|..||+ |+||.+|+ +||||+||++||+++ +|.++++|++||+|||+||++||+
T Consensus 82 ~~iL~~l~~~~~s~pF~~pV~----~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N~~~yN~ 154 (189)
T 2ro1_A 82 ERVLLALFCHEPCRPLHQLAT----DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLTE 154 (189)
T ss_dssp HHHHHHHHHSTTHHHHHSCSC----CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhhcccCccchhhcCCCC----hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHCC
Confidence 446666667888999999998 57999998 899999999999999 999999999999999999999995
No 136
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=3.8e-13 Score=152.92 Aligned_cols=230 Identities=19% Similarity=0.197 Sum_probs=153.7
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC-cEEEEEecch
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ-KVSFYMRKGA 452 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~-~~~~~~~~~~ 452 (976)
+...+++++|.+..++.|.+++...+. ...+..++|+||+|||||++++++++.+..... ...++.+++.
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 344557899999999999887643110 145678999999999999999999998854321 3566677765
Q ss_pred hHH------hhh----------HhH-HHHHHHHHHHHHHhcC-CcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhc
Q 002045 453 DVL------SKW----------VGE-AERQLKLLFEEAQRNQ-PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDG 514 (976)
Q Consensus 453 ~l~------~~~----------~g~-~~~~l~~~f~~a~~~~-p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~ 514 (976)
... ... .+. .......++..+.... |+||||||++.+..... ..++..|+..++.
T Consensus 86 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~-------~~~l~~l~~~~~~ 158 (386)
T 2qby_A 86 QIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN-------DDILYKLSRINSE 158 (386)
T ss_dssp HHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC-------STHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc-------CHHHHHHhhchhh
Confidence 322 110 010 2223444444444433 88999999998863211 2356667777764
Q ss_pred cCCCCcEEEEecCCCc---cccchhhcCCCCCc-cccCCCCCCHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHcc---
Q 002045 515 LDSRGQVVLIGATNRV---DAIDGALRRPGRFD-REFNFPLPGCEARAEILDIHTRKW--KQPPSRELKSELAASCV--- 585 (976)
Q Consensus 515 ~~~~~~vivI~atn~~---~~ld~aL~r~gRf~-~~i~~~~P~~~er~~Il~~~l~~~--~~~~~~~~l~~lA~~t~--- 585 (976)
. ...++.||++|+.+ ..+++.+.+ ||. ..+.|++++.++..+|+...+... ...++.+.+..++..+.
T Consensus 159 ~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (386)
T 2qby_A 159 V-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREH 235 (386)
T ss_dssp C-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTT
T ss_pred c-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhc
Confidence 4 34578888888876 457778877 665 489999999999999999877532 34667888888888877
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhCCccccCcccccccccceeEeehhhhhccccc
Q 002045 586 GYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (976)
Q Consensus 586 G~s~~dI~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~i 639 (976)
| +...+.++|..|+..+..... ..|+.+++..++...
T Consensus 236 G-~~r~~~~ll~~a~~~a~~~~~----------------~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 236 G-DARRALDLLRVSGEIAERMKD----------------TKVKEEYVYMAKEEI 272 (386)
T ss_dssp C-CHHHHHHHHHHHHHHHHHTTC----------------SSCCHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHHhcCC----------------CccCHHHHHHHHHHH
Confidence 5 456677788888766654321 236667777665544
No 137
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.48 E-value=2.1e-14 Score=157.12 Aligned_cols=66 Identities=26% Similarity=0.392 Sum_probs=63.3
Q ss_pred cccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 911 LYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 911 ~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
..++.+++|..||++..+|+|+++|++||||+||++||++++|.++++|.+||+|||+||++||++
T Consensus 176 ~~~~~s~~F~~pvd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~ 241 (311)
T 2r0y_A 176 DKVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDP 241 (311)
T ss_dssp CSSCTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCT
T ss_pred cCCccHHHHhCCCChhhcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 456789999999999999999999999999999999999999999999999999999999999985
No 138
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.47 E-value=2.2e-13 Score=153.73 Aligned_cols=193 Identities=17% Similarity=0.200 Sum_probs=131.5
Q ss_pred CCCCcccccChHHHHHHHHHHH-HcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC-cE-------
Q 002045 374 ESVSFDDIGGLSEYIDALKEMV-FFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ-KV------- 444 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v-~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~-~~------- 444 (976)
.+.+|++++|++.+++.|+.++ .. + ..+ +++|+||+|||||++++++|..+..... .+
T Consensus 9 rP~~~~~~vg~~~~~~~l~~~~~~~-----------~-~~~-~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~ 75 (354)
T 1sxj_E 9 RPKSLNALSHNEELTNFLKSLSDQP-----------R-DLP-HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF 75 (354)
T ss_dssp CCCSGGGCCSCHHHHHHHHTTTTCT-----------T-CCC-CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------
T ss_pred CCCCHHHhcCCHHHHHHHHHHHhhC-----------C-CCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceee
Confidence 4568999999999998887765 21 1 223 3999999999999999999997633211 00
Q ss_pred ----------------EEEEecchhHHhhhHhHHHHHHHHHHHHHH--------------hcCCcEEEEccccccCCCCC
Q 002045 445 ----------------SFYMRKGADVLSKWVGEAERQLKLLFEEAQ--------------RNQPSIIFFDEIDGLAPVRS 494 (976)
Q Consensus 445 ----------------~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~--------------~~~p~VL~iDEid~L~~~r~ 494 (976)
.++.+++...... . ...++.++..+. ...|.||||||++.|.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~---- 147 (354)
T 1sxj_E 76 VTASNRKLELNVVSSPYHLEITPSDMGNN---D-RIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT---- 147 (354)
T ss_dssp ----------CCEECSSEEEECCC----C---C-HHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC----
T ss_pred cccccccceeeeecccceEEecHhhcCCc---c-hHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC----
Confidence 1223332221100 0 002333333321 2356799999999863
Q ss_pred ChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCC-
Q 002045 495 SKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPS- 573 (976)
Q Consensus 495 ~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~- 573 (976)
......|+..|+... .++.||.+|+.+..+.+.+++ |+ ..+.|++|+.+++..+++..+...+..++
T Consensus 148 -------~~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (354)
T 1sxj_E 148 -------KDAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLET 215 (354)
T ss_dssp -------HHHHHHHHHHHHHST--TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEECC
T ss_pred -------HHHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCc
Confidence 334556777777543 357777888888889999998 77 78999999999999999999988777777
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHH
Q 002045 574 RELKSELAASCVGYCGADLKALCTEAA 600 (976)
Q Consensus 574 ~~~l~~lA~~t~G~s~~dI~~l~~~A~ 600 (976)
++.+..++..+.| +.+++.+++..++
T Consensus 216 ~~~l~~i~~~~~G-~~r~a~~~l~~~~ 241 (354)
T 1sxj_E 216 KDILKRIAQASNG-NLRVSLLMLESMA 241 (354)
T ss_dssp SHHHHHHHHHHTT-CHHHHHHHHTHHH
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 8888899988866 4555555555444
No 139
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.46 E-value=1.7e-13 Score=172.10 Aligned_cols=205 Identities=22% Similarity=0.263 Sum_probs=147.3
Q ss_pred cccccChHHHHHHHHHHHHcccCChhHHhhcCC----CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 378 FDDIGGLSEYIDALKEMVFFPLLYPDFFASYHI----TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 378 ~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~----~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
+..|+|++.++..|...+... ..|+ .|..++||+||||||||++|++++..+...+ .+|+.++++.
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~--------~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~--~~~i~i~~~~ 626 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRA--------RAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE--EAMIRIDMTE 626 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHH--------GGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSG--GGEEEECTTT
T ss_pred hcccCCcHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC--CcEEEEechh
Confidence 356899999999998887541 1121 2335899999999999999999999985432 5677888876
Q ss_pred HHhh------------hHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC-----
Q 002045 454 VLSK------------WVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD----- 516 (976)
Q Consensus 454 l~~~------------~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~----- 516 (976)
+... |+|... ...+...+....++|||||||+.+ ...+++.|+..|+...
T Consensus 627 ~~~~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~l~~~~~~~~~ 693 (854)
T 1qvr_A 627 YMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKA-----------HPDVFNILLQILDDGRLTDSH 693 (854)
T ss_dssp CCSSGGGGGC----------------CHHHHHHHCSSEEEEESSGGGS-----------CHHHHHHHHHHHTTTEECCSS
T ss_pred ccchhHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEeccccc-----------CHHHHHHHHHHhccCceECCC
Confidence 5432 223221 123334444555689999999987 3568888999987432
Q ss_pred ----CCCcEEEEecCCCc--------------------------cccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHh
Q 002045 517 ----SRGQVVLIGATNRV--------------------------DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTR 566 (976)
Q Consensus 517 ----~~~~vivI~atn~~--------------------------~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~ 566 (976)
...+++||+|||.. ..+.+.|.. ||+.++.|.+|+.+++..|+..++.
T Consensus 694 g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~ 771 (854)
T 1qvr_A 694 GRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLS 771 (854)
T ss_dssp SCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred CCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHH
Confidence 11367899999972 124566766 8999999999999999999988776
Q ss_pred c---------CCCCCCHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHhh
Q 002045 567 K---------WKQPPSRELKSELAASCV--GYCGADLKALCTEAAIRAFREK 607 (976)
Q Consensus 567 ~---------~~~~~~~~~l~~lA~~t~--G~s~~dI~~l~~~A~~~a~~~~ 607 (976)
. ..+.+++++++.|+.... .++.++|.+++..+...++.+.
T Consensus 772 ~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~ 823 (854)
T 1qvr_A 772 YLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQK 823 (854)
T ss_dssp HHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 3 234578889999998766 6788999999999887776653
No 140
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.46 E-value=3.9e-14 Score=158.78 Aligned_cols=66 Identities=26% Similarity=0.392 Sum_probs=63.2
Q ss_pred cccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 911 LYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 911 ~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
..++.+++|..||++..+|+|+++|++||||+||++||++++|.++++|.+||.|||+||++||++
T Consensus 226 ~~~~~s~~F~~pvd~~~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~ 291 (361)
T 2r10_A 226 DKVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDP 291 (361)
T ss_dssp CSSCTTGGGSSCCCTTTCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCT
T ss_pred cCCcchhcccCCCChhhcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 356789999999999999999999999999999999999999999999999999999999999985
No 141
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.45 E-value=3.4e-13 Score=151.50 Aligned_cols=179 Identities=20% Similarity=0.204 Sum_probs=131.6
Q ss_pred CCCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecch
Q 002045 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (976)
Q Consensus 373 ~~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~ 452 (976)
..+.+|++++|++.+++.|...+.. | ..+ ++||+||||||||++|+++|+.+........+..++++
T Consensus 19 ~rp~~~~~~~g~~~~~~~L~~~i~~-----------g-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 85 (340)
T 1sxj_C 19 YRPETLDEVYGQNEVITTVRKFVDE-----------G-KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNAS 85 (340)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHT-----------T-CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTT
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCc
Confidence 3556899999999999999887753 1 222 49999999999999999999998654444456666665
Q ss_pred hHHhhhHhHHHHHHHHHHHHHHh------cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEec
Q 002045 453 DVLSKWVGEAERQLKLLFEEAQR------NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGA 526 (976)
Q Consensus 453 ~l~~~~~g~~~~~l~~~f~~a~~------~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~a 526 (976)
+..+ . ..++..+..... ..+.|++|||+|.|. ......|+..++.. ...+.+|++
T Consensus 86 ~~~~--~----~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~-----------~~~~~~L~~~le~~--~~~~~~il~ 146 (340)
T 1sxj_C 86 DDRG--I----DVVRNQIKDFASTRQIFSKGFKLIILDEADAMT-----------NAAQNALRRVIERY--TKNTRFCVL 146 (340)
T ss_dssp SCCS--H----HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC-----------HHHHHHHHHHHHHT--TTTEEEEEE
T ss_pred cccc--H----HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhcC--CCCeEEEEE
Confidence 4211 1 122333322221 236799999999884 23456678888754 345667778
Q ss_pred CCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccC
Q 002045 527 TNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVG 586 (976)
Q Consensus 527 tn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G 586 (976)
||.+..+.+++++ |+. .+.|+.++.++..+++...+...++.++...+..++..+.|
T Consensus 147 ~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G 203 (340)
T 1sxj_C 147 ANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG 203 (340)
T ss_dssp ESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT
T ss_pred ecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 8999999999999 774 78899999999999999988777777888888888887766
No 142
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.44 E-value=3.6e-12 Score=145.25 Aligned_cols=209 Identities=18% Similarity=0.124 Sum_probs=143.7
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCc--eEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecch
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPR--GVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~--~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~ 452 (976)
...+++++|.+..++.|..++...+ . + ..+. +++|+||||||||+++++++..+.... ...++.+++.
T Consensus 13 ~~~p~~l~gr~~~~~~l~~~l~~~~------~--~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~ 82 (389)
T 1fnn_A 13 SYVPKRLPHREQQLQQLDILLGNWL------R--N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGF 82 (389)
T ss_dssp TCCCSCCTTCHHHHHHHHHHHHHHH------H--S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETT
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHH------c--C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCc
Confidence 3445789999999999988875411 1 1 2334 899999999999999999999986441 2456666654
Q ss_pred hHH------hhhH----------h-HHHHHHHHHHHHHHh-cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhc
Q 002045 453 DVL------SKWV----------G-EAERQLKLLFEEAQR-NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDG 514 (976)
Q Consensus 453 ~l~------~~~~----------g-~~~~~l~~~f~~a~~-~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~ 514 (976)
... .... + ........+...+.. ..|.||||||+|.+ ....+..|+.+++.
T Consensus 83 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-----------~~~~~~~L~~~~~~ 151 (389)
T 1fnn_A 83 IYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----------APDILSTFIRLGQE 151 (389)
T ss_dssp TCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-----------CHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-----------chHHHHHHHHHHHh
Confidence 321 1111 1 011222223232322 45889999999988 23466677777764
Q ss_pred cCC--CCcEEEEecCCCc---cccchhhcCCCCCcc-ccCCCCCCHHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHcc-
Q 002045 515 LDS--RGQVVLIGATNRV---DAIDGALRRPGRFDR-EFNFPLPGCEARAEILDIHTRK--WKQPPSRELKSELAASCV- 585 (976)
Q Consensus 515 ~~~--~~~vivI~atn~~---~~ld~aL~r~gRf~~-~i~~~~P~~~er~~Il~~~l~~--~~~~~~~~~l~~lA~~t~- 585 (976)
... ..++.||++||.+ ..+++.+.+ ||.. .+.|++++.++..+++...+.. ....++.+.+..++..+.
T Consensus 152 ~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (389)
T 1fnn_A 152 ADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGA 229 (389)
T ss_dssp HHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSB
T ss_pred CCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhh
Confidence 322 1478888888877 557777777 7764 7999999999999999988764 233677888899999984
Q ss_pred -------CCCHHHHHHHHHHHHHHHHHh
Q 002045 586 -------GYCGADLKALCTEAAIRAFRE 606 (976)
Q Consensus 586 -------G~s~~dI~~l~~~A~~~a~~~ 606 (976)
+-..+.+.++|..|+..+..+
T Consensus 230 ~~~~~~~~G~~r~~~~~l~~a~~~a~~~ 257 (389)
T 1fnn_A 230 QTPLDTNRGDARLAIDILYRSAYAAQQN 257 (389)
T ss_dssp SSTTCTTSCCHHHHHHHHHHHHHHHHHT
T ss_pred cccCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 235678888888888776654
No 143
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.42 E-value=6.5e-13 Score=143.64 Aligned_cols=198 Identities=19% Similarity=0.146 Sum_probs=121.1
Q ss_pred CCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHH
Q 002045 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVL 455 (976)
Q Consensus 376 ~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~ 455 (976)
.+|++|+|.+..+..+.+.+... ...+.+|||+||||||||++|+++++.+... ..+|+.++++.+.
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~-----------~~~~~~vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~~~ 69 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAALN 69 (265)
T ss_dssp -------CCCHHHHHHHHHHHHH-----------TTSCSCEEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGGSC
T ss_pred cccccceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCCCC
Confidence 47889999999988887766542 1234689999999999999999999887533 2567888887653
Q ss_pred hhh-----HhHHHHH-------HHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC-------
Q 002045 456 SKW-----VGEAERQ-------LKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD------- 516 (976)
Q Consensus 456 ~~~-----~g~~~~~-------l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~------- 516 (976)
... +|..... ....|.. ..+++||||||+.+. ..++..|+..|+...
T Consensus 70 ~~~~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~-----------~~~q~~Ll~~l~~~~~~~~g~~ 135 (265)
T 2bjv_A 70 ENLLDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAP-----------MMVQEKLLRVIEYGELERVGGS 135 (265)
T ss_dssp HHHHHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGSC-----------HHHHHHHHHHHHHCEECCCCC-
T ss_pred hhHHHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhcC-----------HHHHHHHHHHHHhCCeecCCCc
Confidence 221 1110000 0112222 235699999999884 345566777776321
Q ss_pred --CCCcEEEEecCCCc-c------ccchhhcCCCCCc-cccCCCCCCH--HHHHHHHHHHHh----cCCC----CCCHHH
Q 002045 517 --SRGQVVLIGATNRV-D------AIDGALRRPGRFD-REFNFPLPGC--EARAEILDIHTR----KWKQ----PPSREL 576 (976)
Q Consensus 517 --~~~~vivI~atn~~-~------~ld~aL~r~gRf~-~~i~~~~P~~--~er~~Il~~~l~----~~~~----~~~~~~ 576 (976)
...++.||++||.+ . .+.+.|.+ ||. ..|.+|+... ++...+++.++. ..+. .++.+.
T Consensus 136 ~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a 213 (265)
T 2bjv_A 136 QPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERA 213 (265)
T ss_dssp -CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHH
T ss_pred ccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHH
Confidence 12357788888873 2 25677777 774 3456665543 455555554443 2332 567888
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHH
Q 002045 577 KSELAASCVGYCGADLKALCTEAAIR 602 (976)
Q Consensus 577 l~~lA~~t~G~s~~dI~~l~~~A~~~ 602 (976)
+..|....-..+.++|.+++..++..
T Consensus 214 ~~~L~~~~~~gn~reL~~~l~~~~~~ 239 (265)
T 2bjv_A 214 RETLLNYRWPGNIRELKNVVERSVYR 239 (265)
T ss_dssp HHHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 88787665344667888888887643
No 144
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.41 E-value=5.8e-14 Score=167.12 Aligned_cols=138 Identities=12% Similarity=0.197 Sum_probs=96.6
Q ss_pred CCceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCccccc---------CCCCCChHHHHHHHHHHHHhcCCceEecccc
Q 002045 703 RPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLS---------DPSAKTPEEALVHIFGEARRTTPSILYIPQF 773 (976)
Q Consensus 703 ~~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~---------~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEi 773 (976)
.+.+||+||||||||++|++||..+ +.+++.+++..+.. . ++|.....+..+|..|....| |||||||
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l-~~~~~~i~~~~~~~~~~~~g~~~~-~ig~~~~~~~~~~~~a~~~~~-vl~lDEi 184 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSL-GRKFVRISLGGVRDESEIRGHRRT-YVGAMPGRIIQGMKKAGKLNP-VFLLDEI 184 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHH-TCEEEEECCCC---------------------CHHHHHHTTCSSSE-EEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc-CCCeEEEEecccchhhhhhhHHHH-HhccCchHHHHHHHHhhccCC-EEEEhhh
Confidence 3579999999999999999999998 67888888765432 3 356667778888888876665 9999999
Q ss_pred chhHHHHHHHHHHHHHHHHhhCCC-------------CCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHH
Q 002045 774 NLWWENAHEQLRAVLLTLLEELPS-------------HLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSL 840 (976)
Q Consensus 774 d~l~~~~~~~~~~~l~~ll~~~~~-------------~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~ 840 (976)
|.+....+....+.|+.+|+.... ...++||+|||.+ ..|++ +.+.++ .+|.|+.|+.+++..
T Consensus 185 d~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~-~~l~~--aL~~R~-~vi~~~~~~~~e~~~ 260 (543)
T 3m6a_A 185 DKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNL-ATIPG--PLRDRM-EIINIAGYTEIEKLE 260 (543)
T ss_dssp SSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSST-TTSCH--HHHHHE-EEEECCCCCHHHHHH
T ss_pred hhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCcc-ccCCH--HHHhhc-ceeeeCCCCHHHHHH
Confidence 999876555555666666653221 1578999999998 77887 555554 578999999999999
Q ss_pred HHHHHHH
Q 002045 841 FLGRLIE 847 (976)
Q Consensus 841 i~~~~l~ 847 (976)
||+.++.
T Consensus 261 Il~~~l~ 267 (543)
T 3m6a_A 261 IVKDHLL 267 (543)
T ss_dssp HHHHTHH
T ss_pred HHHHHHH
Confidence 9999874
No 145
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.41 E-value=3.9e-13 Score=157.15 Aligned_cols=198 Identities=20% Similarity=0.138 Sum_probs=126.0
Q ss_pred cccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecc-----hhH
Q 002045 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG-----ADV 454 (976)
Q Consensus 380 ~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~-----~~l 454 (976)
.|+|.+.+++.+...+.. ..+|||+||||||||++|+++|..+... ..|..+.+ +++
T Consensus 23 ~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~~---~~f~~~~~~~~t~~dL 84 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNA---RAFEYLMTRFSTPEEV 84 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSSC---CEEEEECCTTCCHHHH
T ss_pred hhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhhh---hHHHHHHHhcCCHHHh
Confidence 478999998887665432 3589999999999999999999977421 23333332 333
Q ss_pred HhhhHhHHHHHHHHHHHHHHhc---CCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC--------CCCcEEE
Q 002045 455 LSKWVGEAERQLKLLFEEAQRN---QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD--------SRGQVVL 523 (976)
Q Consensus 455 ~~~~~g~~~~~l~~~f~~a~~~---~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~--------~~~~viv 523 (976)
++.+.+..... ...|..+..+ .++|||||||+.+ ...++..|+..|+... .....++
T Consensus 85 ~G~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~-----------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~i 152 (500)
T 3nbx_X 85 FGPLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERQFRNGAHVEKIPMRLL 152 (500)
T ss_dssp HCCBC-----------CBCCTTSGGGCSEEEEESGGGC-----------CHHHHHHHHHHHHSSEEECSSSEEECCCCEE
T ss_pred cCcccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhh-----------cHHHHHHHHHHHHHHhccCCCCcCCcchhhh
Confidence 33222211111 1122212111 3679999999876 3457778888886311 1122245
Q ss_pred EecCCCccc---cchhhcCCCCCccccCCCCCCH-HHHHHHHHHHHhc-----------------------CCCCCCHHH
Q 002045 524 IGATNRVDA---IDGALRRPGRFDREFNFPLPGC-EARAEILDIHTRK-----------------------WKQPPSREL 576 (976)
Q Consensus 524 I~atn~~~~---ld~aL~r~gRf~~~i~~~~P~~-~er~~Il~~~l~~-----------------------~~~~~~~~~ 576 (976)
|+|||++.. +.+++.+ ||...+.+++|+. +++..|++..... ..+.+++++
T Consensus 153 I~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v 230 (500)
T 3nbx_X 153 VAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHV 230 (500)
T ss_dssp EEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHH
T ss_pred hhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHH
Confidence 677775322 3458888 9988899999987 7788888765421 134456666
Q ss_pred HHHHHHHc---------cCCCHHHHHHHHHHHHHHHHHhhCC
Q 002045 577 KSELAASC---------VGYCGADLKALCTEAAIRAFREKYP 609 (976)
Q Consensus 577 l~~lA~~t---------~G~s~~dI~~l~~~A~~~a~~~~~~ 609 (976)
++.++... .|.+.+.+..+++.|...|......
T Consensus 231 ~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~ 272 (500)
T 3nbx_X 231 FELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRS 272 (500)
T ss_dssp HHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCc
Confidence 66666554 4789999999998888777776543
No 146
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.36 E-value=6.6e-13 Score=146.55 Aligned_cols=138 Identities=16% Similarity=0.199 Sum_probs=99.5
Q ss_pred CCceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCccccc-CCCCCChHHHHHHHHHHH-----HhcCCceEeccccchh
Q 002045 703 RPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLS-DPSAKTPEEALVHIFGEA-----RRTTPSILYIPQFNLW 776 (976)
Q Consensus 703 ~~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~-~~~~g~~e~~~~~~f~~a-----~~~~p~ilfiDEid~l 776 (976)
+.++||+||||||||++|+++|+.+ +.+++.++++.+.. +|.....+..+..++..+ ....++||||||||.+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l 128 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKI 128 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH-TCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh-CCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhc
Confidence 3579999999999999999999998 78999999988876 443334455677777633 1123689999999999
Q ss_pred HHHH--------HHHHHHHHHHHHhhCC--------CCCCEEEEEec----CCCcccCcCCCCCCcCCccEEEecCCCHH
Q 002045 777 WENA--------HEQLRAVLLTLLEELP--------SHLPILLLGSS----SVPLAEVEGDPSTVFPLRSVYQVEKPSTE 836 (976)
Q Consensus 777 ~~~~--------~~~~~~~l~~ll~~~~--------~~~~v~vi~tt----n~~~~~Ld~~~~~~~~~r~~i~v~~P~~~ 836 (976)
.... ...+.+.|+.+|+... ....++||+|+ +.+ ..+++ +.+.++..++.|++|+.+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~--~l~~R~~~~i~~~~~~~~ 205 (310)
T 1ofh_A 129 CKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARP-SDLIP--ELQGRLPIRVELTALSAA 205 (310)
T ss_dssp SCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCG-GGSCH--HHHHTCCEEEECCCCCHH
T ss_pred CccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCc-ccCCH--HHHhhCCceEEcCCcCHH
Confidence 7432 2234566777777531 23467788884 444 56666 333333367899999999
Q ss_pred HHHHHHHH
Q 002045 837 DRSLFLGR 844 (976)
Q Consensus 837 er~~i~~~ 844 (976)
++.+|++.
T Consensus 206 ~~~~il~~ 213 (310)
T 1ofh_A 206 DFERILTE 213 (310)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHh
Confidence 99999983
No 147
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.34 E-value=7.7e-13 Score=149.93 Aligned_cols=91 Identities=21% Similarity=0.356 Sum_probs=72.8
Q ss_pred CCceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCCh-HHHHHHHHHHH----HhcCCceEeccccchhH
Q 002045 703 RPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTP-EEALVHIFGEA----RRTTPSILYIPQFNLWW 777 (976)
Q Consensus 703 ~~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~-e~~~~~~f~~a----~~~~p~ilfiDEid~l~ 777 (976)
+.++||+||||||||++|++||+.+ +.+|+.++++.+....+.|.. +..+..+|..+ ....++||||||||.+.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~-~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~ 129 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL-DVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKIS 129 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT-TCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc-CCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhc
Confidence 4579999999999999999999998 789999999888755335654 56677788776 45568999999999987
Q ss_pred HH----------HHHHHHHHHHHHHhh
Q 002045 778 EN----------AHEQLRAVLLTLLEE 794 (976)
Q Consensus 778 ~~----------~~~~~~~~l~~ll~~ 794 (976)
.. ....+.+.|+.+|++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~Ll~~leg 156 (363)
T 3hws_A 130 RKSDNPSITRDVSGEGVQQALLKLIEG 156 (363)
T ss_dssp CCSSCC---CHHHHHHHHHHHHHHHHC
T ss_pred ccccccccccccchHHHHHHHHHHhcC
Confidence 43 223477888888883
No 148
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.33 E-value=9.1e-12 Score=163.15 Aligned_cols=111 Identities=14% Similarity=0.078 Sum_probs=76.2
Q ss_pred CCceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcccc-----cCC----------CCCChHHHHHHHHHHHHhcCC
Q 002045 703 RPRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALL-----SDP----------SAKTPEEALVHIFGEARRTTP 765 (976)
Q Consensus 703 ~~~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~-----~~~----------~~g~~e~~~~~~f~~a~~~~p 765 (976)
+..++|+||||||||+||.+++.+.. +..+..++....+ ..+ .....|+.++.++..++...|
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~ 1506 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 1506 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhcCCC
Confidence 45799999999999999999988742 2233333433221 000 123667888889999999999
Q ss_pred ceEeccccchhHHHH-------------HHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccC
Q 002045 766 SILYIPQFNLWWENA-------------HEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEV 814 (976)
Q Consensus 766 ~ilfiDEid~l~~~~-------------~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~L 814 (976)
++||||+++.+.+.. +.++++.++..|..+....+++|| +||..+..+
T Consensus 1507 ~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI-~tNq~~~~~ 1567 (2050)
T 3cmu_A 1507 DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQIRMKI 1567 (2050)
T ss_dssp SEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEE-EEECEEECT
T ss_pred CEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEE-EEccccccc
Confidence 999999999877531 456666666666666556677777 456553443
No 149
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.33 E-value=1e-12 Score=144.92 Aligned_cols=193 Identities=21% Similarity=0.217 Sum_probs=123.0
Q ss_pred cccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhh-
Q 002045 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKW- 458 (976)
Q Consensus 380 ~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~- 458 (976)
+|+|.+..+..+.+.+... ...+.+|||+||||||||++|++++...... ..+|+.++|+.+....
T Consensus 3 ~iig~s~~~~~~~~~~~~~-----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~--~~~~v~v~~~~~~~~l~ 69 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMV-----------APSDATVLIHGDSGTGKELVARALHACSARS--DRPLVTLNCAALNESLL 69 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHH-----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCS--SSCCCEEECSSCCHHHH
T ss_pred CcEECCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCchHHHHHHHHHHhCccc--CCCeEEEeCCCCChHHH
Confidence 5889999888888876542 1446789999999999999999999876433 3567777776543321
Q ss_pred ----HhHH-------HHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC---------CC
Q 002045 459 ----VGEA-------ERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD---------SR 518 (976)
Q Consensus 459 ----~g~~-------~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~---------~~ 518 (976)
+|.. .......|..+. +++||||||+.|. ..++..|+..|+... ..
T Consensus 70 ~~~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~-----------~~~q~~Ll~~l~~~~~~~~g~~~~~~ 135 (304)
T 1ojl_A 70 ESELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDIS-----------PLMQVRLLRAIQEREVQRVGSNQTIS 135 (304)
T ss_dssp HHHHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCC-----------HHHHHHHHHHHHSSBCCBTTBCCCCB
T ss_pred HHHhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCC-----------HHHHHHHHHHHhcCEeeecCCccccc
Confidence 1110 001122344443 4599999999884 245667777776432 12
Q ss_pred CcEEEEecCCCc-c------ccchhhcCCCCCc-cccCCCCCC--HHHHHHHHHHHHhc----C---CCCCCHHHHHHHH
Q 002045 519 GQVVLIGATNRV-D------AIDGALRRPGRFD-REFNFPLPG--CEARAEILDIHTRK----W---KQPPSRELKSELA 581 (976)
Q Consensus 519 ~~vivI~atn~~-~------~ld~aL~r~gRf~-~~i~~~~P~--~~er~~Il~~~l~~----~---~~~~~~~~l~~lA 581 (976)
..+.||++||.. . .+.+.|.. ||. ..|.+|+.. .++...++..++.. . ...++.+.+..|.
T Consensus 136 ~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~ 213 (304)
T 1ojl_A 136 VDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLI 213 (304)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHH
T ss_pred CCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHH
Confidence 357888899874 1 23445555 553 235566554 35555566655443 2 2457788888888
Q ss_pred HHccCCCHHHHHHHHHHHHH
Q 002045 582 ASCVGYCGADLKALCTEAAI 601 (976)
Q Consensus 582 ~~t~G~s~~dI~~l~~~A~~ 601 (976)
.+.-.-+.+++.+++..++.
T Consensus 214 ~~~wpGnvReL~~~l~~~~~ 233 (304)
T 1ojl_A 214 HYDWPGNIRELENAIERAVV 233 (304)
T ss_dssp HCCCSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHH
Confidence 77633466788888887764
No 150
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.32 E-value=5.6e-13 Score=149.37 Aligned_cols=60 Identities=28% Similarity=0.344 Sum_probs=55.9
Q ss_pred cccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCC-CHHHHHHHHHHHHHHHhhhcCC
Q 002045 915 RFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYV-TCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 915 ~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~-~~~~f~~D~~li~~Na~~yn~~ 976 (976)
.+++|..||+...+|+||++|++||||+||++|| +.|. ++++|++||.|||+||++||++
T Consensus 97 ~~~~F~~p~~~~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~yN~~ 157 (361)
T 2r10_A 97 IFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEY 157 (361)
T ss_dssp HHGGGSSCCCTTTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHHHBCS
T ss_pred ccHHhcCCCCcccCCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhhcCCC
Confidence 4789999999999999999999999999999998 4555 8999999999999999999986
No 151
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.32 E-value=4.6e-12 Score=171.90 Aligned_cols=340 Identities=15% Similarity=0.159 Sum_probs=165.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhHhHHHHHHHHHHHHH----H------------h
Q 002045 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEA----Q------------R 475 (976)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a----~------------~ 475 (976)
...+|||+||||||||+++..+...+. ...++.++.+..... ..+...++.. . .
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~----~~~~~~infS~~Tta------~~l~~~~e~~~e~~~~~~~G~~~~p~~~ 1372 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFP----DFEVVSLNFSSATTP------ELLLKTFDHHCEYKRTPSGETVLRPTQL 1372 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCT----TEEEEEECCCTTCCH------HHHHHHHHHHEEEEECTTSCEEEEESST
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCC----CCceEEEEeeCCCCH------HHHHHHHhhcceEEeccCCCcccCCCcC
Confidence 346899999999999988765443321 245566666543321 1222222210 0 1
Q ss_pred cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCC-------CCcEEEEecCCCcc-----ccchhhcCCCCC
Q 002045 476 NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS-------RGQVVLIGATNRVD-----AIDGALRRPGRF 543 (976)
Q Consensus 476 ~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~-------~~~vivI~atn~~~-----~ld~aL~r~gRf 543 (976)
+...||||||++.-. ....+.+..-.++.+++..-.-+.. -.++.+|+|+|+|. .|+++|.| ||
T Consensus 1373 Gk~~VlFiDDiNmp~--~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F 1448 (3245)
T 3vkg_A 1373 GKWLVVFCDEINLPS--TDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HA 1448 (3245)
T ss_dssp TCEEEEEETTTTCCC--CCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TC
T ss_pred CceEEEEecccCCCC--ccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hc
Confidence 223699999998532 2323333333444444432111111 13578999999884 49999999 88
Q ss_pred ccccCCCCCCHHHHHHHHHHHHhcCCCC------CCHHHHH-------HHHHH-------ccCCCHHHHHHHHHHHHHH-
Q 002045 544 DREFNFPLPGCEARAEILDIHTRKWKQP------PSRELKS-------ELAAS-------CVGYCGADLKALCTEAAIR- 602 (976)
Q Consensus 544 ~~~i~~~~P~~~er~~Il~~~l~~~~~~------~~~~~l~-------~lA~~-------t~G~s~~dI~~l~~~A~~~- 602 (976)
.+|+++.|+.++...|+..++..+... ....+.. .+... ..-|+.+||..+++-....
T Consensus 1449 -~vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGll~~~ 1527 (3245)
T 3vkg_A 1449 -PILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALLEAI 1527 (3245)
T ss_dssp -CEEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHHHHHH
T ss_pred -eEEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHHHHHhc
Confidence 459999999999999987665442111 1111111 11111 1236888888877653321
Q ss_pred ------------------HHHhhCCccccCcccccccccceeEeehhhhhcccc--cccccccccccccCCCcccchhhh
Q 002045 603 ------------------AFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMST--ITPAAHRGATVHSRPLSLVVAPCL 662 (976)
Q Consensus 603 ------------------a~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~--i~p~~~r~~~~~~~~~~~~~i~~l 662 (976)
+.|-..+++....+......--..+...+|...-.. ..|... ..... ..........+
T Consensus 1528 ~~~~~~~~~~lvrLW~HE~~RVF~DRLv~~~Dr~~f~~~l~~~~~~~F~~~~~~~~~~pllf-~~f~~-~~Y~~v~~~~l 1605 (3245)
T 3vkg_A 1528 QTMDGCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDEVALKHFPSVNLDALKRPILY-SNWLT-KDYQPVNRSDL 1605 (3245)
T ss_dssp HTSSCCCTTHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHHHHCTTSCGGGGCSSCCC-CSSCC-----CCCHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCcchhhhcccCcch-hhhcc-ccCccCCHHHH
Confidence 111112211111111110000000111111100000 000000 00000 00000112233
Q ss_pred HHHHHHHhhhhcc---cCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcc
Q 002045 663 QRHLQKAMNYISD---IFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPA 739 (976)
Q Consensus 663 ~~~l~~~~~~l~~---i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~ 739 (976)
...+++.+..-.. -...+-+...+..+.--..-...| +.++||+|..|+||++|++..|+.. ++.++.+..
T Consensus 1606 ~~~l~~~L~~yn~~~~~m~LVlF~daleHv~RI~RIL~qp---~GhaLLVGvgGSGkqSLtrLAa~i~-~~~vfqi~i-- 1679 (3245)
T 3vkg_A 1606 REYVKARLKVFYEEELDVPLVLFNEVLDHILRIDRVFRQP---QGHALLIGVSGGGKSVLSRFVAWMN-GLSIYTIKV-- 1679 (3245)
T ss_dssp HHHHHHHHHTTC------CCCCCHHHHHHHHHHHHHHTST---TCCEEEEESTTSSHHHHHHHHHHHT-TCEEECCC---
T ss_pred HHHHHHHHHHHHhcccCceEEeHHHHHHHHHHHHHHHccC---CCCeEEecCCCCcHHHHHHHHHHHh-CCeeEEEee--
Confidence 3333332221110 001111122222211000000112 3579999999999999999999996 888888874
Q ss_pred cccCCCCCChHHHHHHHHHHHH-hcCCceEeccccch
Q 002045 740 LLSDPSAKTPEEALVHIFGEAR-RTTPSILYIPQFNL 775 (976)
Q Consensus 740 l~~~~~~g~~e~~~~~~f~~a~-~~~p~ilfiDEid~ 775 (976)
..+|...+..+.++.++..|- ...|.|++|+|.+-
T Consensus 1680 -~k~Y~~~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi 1715 (3245)
T 3vkg_A 1680 -NNNYKSSDFDDDLRMLLKRAGCKEEKICFIFDESNV 1715 (3245)
T ss_dssp ----CCHHHHHHHHHHHHHHHHTSCCCEEEEEEGGGC
T ss_pred -eCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecccc
Confidence 345655677788999998885 45567777877654
No 152
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.31 E-value=8.2e-13 Score=144.59 Aligned_cols=61 Identities=28% Similarity=0.341 Sum_probs=56.7
Q ss_pred ccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCC-CHHHHHHHHHHHHHHHhhhcCC
Q 002045 914 KRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYV-TCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 914 ~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~-~~~~f~~D~~li~~Na~~yn~~ 976 (976)
..+++|..||+...+|+|+++|++||||+||++|| +.|. ++++|++||+|||+||++||++
T Consensus 46 ~~~~~F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~~yN~~ 107 (311)
T 2r0y_A 46 DIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEY 107 (311)
T ss_dssp HHHGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHHHHSCT
T ss_pred chhHHhcCCCCcccCCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHHHccCC
Confidence 45789999999999999999999999999999998 5555 8999999999999999999986
No 153
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.31 E-value=6.1e-13 Score=152.23 Aligned_cols=129 Identities=10% Similarity=0.055 Sum_probs=58.6
Q ss_pred CCceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCccccc-CCCCC-ChHHHHHHHHHHHHhcCCceEeccccchhHHH-
Q 002045 703 RPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLS-DPSAK-TPEEALVHIFGEARRTTPSILYIPQFNLWWEN- 779 (976)
Q Consensus 703 ~~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~-~~~~g-~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~- 779 (976)
+.++||+||||||||++|+++|..+ +.+|+.++++.+.. +| +| ..+..++.+|..|... +++||++.+...
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l-~~~~~~v~~~~~~~~g~-vG~d~e~~lr~lf~~a~~~----~~~De~d~~~~~~ 123 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEATKFTEVGY-VGKEVDSIIRDLTDSAMKL----VRQQEIAKNRARA 123 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT-TCCEEEEEGGGGC-----CCCCTHHHHHHHHHHHHHH----HHHHHHHSCC---
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHc-CCCceeecchhhcccce-eeccHHHHHHHHHHHHHhc----chhhhhhhhhccc
Confidence 4689999999999999999999998 78999999988887 45 66 5899999999998774 568999887533
Q ss_pred ---HHHHHHHHHHHHHhhCCCCCCEEEEEe-cCCCcccCcCCCCCCcCCc--cEEEecCCCHH-HHHHHH
Q 002045 780 ---AHEQLRAVLLTLLEELPSHLPILLLGS-SSVPLAEVEGDPSTVFPLR--SVYQVEKPSTE-DRSLFL 842 (976)
Q Consensus 780 ---~~~~~~~~l~~ll~~~~~~~~v~vi~t-tn~~~~~Ld~~~~~~~~~r--~~i~v~~P~~~-er~~i~ 842 (976)
..+++++.|++.|+++.+...| +++ ||++ +.||+ +.++++| ..|+|++|+.. .|.+||
T Consensus 124 ~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~-~~ld~--aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 124 EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTR-QAFRK--KLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp ----------------------------------------------------------------------
T ss_pred hhhHHHHHHHHHHHHhhcccccccc--ccccccCH-HHHHH--HHHcCCCcceEEEEcCCCCccchhhhh
Confidence 4567788888888888665554 455 9999 89999 7777665 88899999987 788876
No 154
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.30 E-value=2.1e-13 Score=138.69 Aligned_cols=132 Identities=18% Similarity=0.216 Sum_probs=91.2
Q ss_pred CceeeccCCCCcHhhHHHHHHHhh---------cCCCeeecCCcccccC-CCCCChHHHHHHHHHHHHh-cCCceEeccc
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHEL---------EKFPVHSLGLPALLSD-PSAKTPEEALVHIFGEARR-TTPSILYIPQ 772 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l---------~~~~~~~~~~~~l~~~-~~~g~~e~~~~~~f~~a~~-~~p~ilfiDE 772 (976)
.++||+||||||||++|+++++.+ .+.+++.+++..++.+ ...|.....+..++..+.. ..|+||||||
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe 123 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDE 123 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEET
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeC
Confidence 469999999999999999999986 3577888888776632 1245666778888876644 4578999999
Q ss_pred cchhHHHH----HHHHHHHHHHHHhhCCCCCCEEEEEecCCCcc----cCcCCCCCCcCCccEEEecCCCHHHHHHHH
Q 002045 773 FNLWWENA----HEQLRAVLLTLLEELPSHLPILLLGSSSVPLA----EVEGDPSTVFPLRSVYQVEKPSTEDRSLFL 842 (976)
Q Consensus 773 id~l~~~~----~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~----~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~ 842 (976)
++.+.... ...+.+.|..++. ...+.||++||.+.. .+++ +.+.++ ..+.|++|+.+++.+||
T Consensus 124 ~~~l~~~~~~~~~~~~~~~l~~~~~----~~~~~~i~~~~~~~~~~~~~~~~--~l~~r~-~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 124 LHTMVGAGKADGAMDAGNMLKPALA----RGELHCVGATTLDEYRQYIEKDA--ALERRF-QKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp GGGGTT------CCCCHHHHHHHHH----TTSCCEEEEECHHHHHHHTTTCH--HHHTTE-EEEECCCCCHHHHHTTC
T ss_pred HHHHhccCcccchHHHHHHHHHhhc----cCCeEEEEeCCHHHHHHHHhcCH--HHHHHh-ceeecCCCCHHHHHHHh
Confidence 99997432 1223444545553 346777888887621 3454 333332 26889999999999876
No 155
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.29 E-value=6.9e-12 Score=140.49 Aligned_cols=127 Identities=17% Similarity=0.235 Sum_probs=93.4
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHEQ 783 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~~~~ 783 (976)
.++||+||||||||++|+++|+.+ +.+|+.++++.+- ....+..++.. ...++|||||||+.+....+..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~-~~~~~~~~~~~~~-------~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~ 125 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM-SANIKTTAAPMIE-------KSGDLAAILTN--LSEGDILFIDEIHRLSPAIEEV 125 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT-TCCEEEEEGGGCC-------SHHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh-CCCeEEecchhcc-------chhHHHHHHHh--ccCCCEEEEechhhcCHHHHHH
Confidence 479999999999999999999997 7789988876542 12344444443 3467999999999987654444
Q ss_pred HHHHHHHHHhhCC----------------CCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 784 LRAVLLTLLEELP----------------SHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 784 ~~~~l~~ll~~~~----------------~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
|+..|+... ...+++||+|||.. ..+++ +.+.++..++.|++|+.+++..|++.++.
T Consensus 126 ----Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~-~~l~~--~L~~R~~~~i~l~~~~~~e~~~il~~~~~ 198 (338)
T 3pfi_A 126 ----LYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRA-GMLSN--PLRDRFGMQFRLEFYKDSELALILQKAAL 198 (338)
T ss_dssp ----HHHHHHTSCC---------CCCCCCCCCCCEEEEEESCG-GGSCH--HHHTTCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred ----HHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCc-cccCH--HHHhhcCEEeeCCCcCHHHHHHHHHHHHH
Confidence 444554321 01248899999988 56766 44444447899999999999999998876
No 156
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.26 E-value=3.1e-12 Score=140.69 Aligned_cols=138 Identities=9% Similarity=0.080 Sum_probs=98.2
Q ss_pred CCceeeccCCCCcHhhHHHHHHHhhc---------CCCeeecCCcccccC---------------CCCCChHHHHHHHHH
Q 002045 703 RPRLLLCGSEGTGVDHLGPAILHELE---------KFPVHSLGLPALLSD---------------PSAKTPEEALVHIFG 758 (976)
Q Consensus 703 ~~~~Ll~G~pGtGKT~lA~aia~~l~---------~~~~~~~~~~~l~~~---------------~~~g~~e~~~~~~f~ 758 (976)
+++++|+||||||||++++++++++. .+.++.+++..+.+. ...|.+.+.+..+|.
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~ 124 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYIT 124 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Confidence 46799999999999999999999873 356788887654321 113456778888998
Q ss_pred HH--HhcCCceEeccccchhHHHHHHHHHHHHHHHHhhCC-CCCCEEEEEecCCCccc----CcCCCCCCcCCccEEEec
Q 002045 759 EA--RRTTPSILYIPQFNLWWENAHEQLRAVLLTLLEELP-SHLPILLLGSSSVPLAE----VEGDPSTVFPLRSVYQVE 831 (976)
Q Consensus 759 ~a--~~~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~-~~~~v~vi~ttn~~~~~----Ld~~~~~~~~~r~~i~v~ 831 (976)
.+ ....++||||||||.+. .+ . +|..++++.. ...+++||+++|.. +. |++.+.+++. ..+|.|+
T Consensus 125 ~~~~~~~~~~ii~lDE~d~l~--~q-~---~L~~l~~~~~~~~s~~~vI~i~n~~-d~~~~~L~~~v~SR~~-~~~i~F~ 196 (318)
T 3te6_A 125 NVPKAKKRKTLILIQNPENLL--SE-K---ILQYFEKWISSKNSKLSIICVGGHN-VTIREQINIMPSLKAH-FTEIKLN 196 (318)
T ss_dssp HSCGGGSCEEEEEEECCSSSC--CT-H---HHHHHHHHHHCSSCCEEEEEECCSS-CCCHHHHHTCHHHHTT-EEEEECC
T ss_pred HhhhccCCceEEEEecHHHhh--cc-h---HHHHHHhcccccCCcEEEEEEecCc-ccchhhcchhhhccCC-ceEEEeC
Confidence 75 34568999999999998 22 2 3444554432 35689999999987 32 3331122222 2578899
Q ss_pred CCCHHHHHHHHHHHHHH
Q 002045 832 KPSTEDRSLFLGRLIEA 848 (976)
Q Consensus 832 ~P~~~er~~i~~~~l~~ 848 (976)
+++.++...|++.-+..
T Consensus 197 pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 197 KVDKNELQQMIITRLKS 213 (318)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999999874
No 157
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.24 E-value=3.5e-11 Score=134.64 Aligned_cols=179 Identities=14% Similarity=0.111 Sum_probs=122.1
Q ss_pred ChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCc-------------------
Q 002045 383 GLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQK------------------- 443 (976)
Q Consensus 383 G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~------------------- 443 (976)
-+.++.+.|...+.. -..+..+||+||||+|||++|+++|+.+......
T Consensus 6 w~~~~~~~l~~~i~~------------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~ 73 (334)
T 1a5t_A 6 WLRPDFEKLVASYQA------------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTH 73 (334)
T ss_dssp GGHHHHHHHHHHHHT------------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHc------------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 346666667666543 1445679999999999999999999998643211
Q ss_pred EEEEEecchhHHhhhHhHHHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCC
Q 002045 444 VSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRG 519 (976)
Q Consensus 444 ~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~----~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~ 519 (976)
..++.+.+..- +.. .....++.+++.+.. +...|+||||+|.|. ....+.|+..|+. ...
T Consensus 74 ~d~~~~~~~~~-~~~--~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~-----------~~a~naLLk~lEe--p~~ 137 (334)
T 1a5t_A 74 PDYYTLAPEKG-KNT--LGVDAVREVTEKLNEHARLGGAKVVWVTDAALLT-----------DAAANALLKTLEE--PPA 137 (334)
T ss_dssp TTEEEECCCTT-CSS--BCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBC-----------HHHHHHHHHHHTS--CCT
T ss_pred CCEEEEecccc-CCC--CCHHHHHHHHHHHhhccccCCcEEEEECchhhcC-----------HHHHHHHHHHhcC--CCC
Confidence 12333333200 000 112335555555442 336799999999984 3456778888884 445
Q ss_pred cEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHH
Q 002045 520 QVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTE 598 (976)
Q Consensus 520 ~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~ 598 (976)
++++|.+||.++.+.+.+++ |+ ..+.|++|+.++..+++.... .++++.+..++..+.| +.+.+.+++..
T Consensus 138 ~~~~Il~t~~~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G-~~r~a~~~l~~ 207 (334)
T 1a5t_A 138 ETWFFLATREPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAG-SPGAALALFQG 207 (334)
T ss_dssp TEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTT-CHHHHHHTTSS
T ss_pred CeEEEEEeCChHhCcHHHhh--cc-eeeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCC-CHHHHHHHhcc
Confidence 78888888889999999999 77 579999999999999998765 4567777788887766 44444444443
No 158
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.23 E-value=4.1e-12 Score=144.03 Aligned_cols=135 Identities=16% Similarity=0.186 Sum_probs=87.5
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcC-CCeeecCCcccccCC--------------------------------------
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEK-FPVHSLGLPALLSDP-------------------------------------- 744 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~-~~~~~~~~~~l~~~~-------------------------------------- 744 (976)
.++||+||||||||++|+++|+.+.. .+++.+++..+++.+
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~ 150 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSR 150 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcc
Confidence 57999999999999999999999843 477777765533322
Q ss_pred ----------CCCChHHHHHHHHHHHHh---------cCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEE
Q 002045 745 ----------SAKTPEEALVHIFGEARR---------TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLG 805 (976)
Q Consensus 745 ----------~~g~~e~~~~~~f~~a~~---------~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ 805 (976)
..|+....++.+|..+.. ..|+||||||||.+... ..+.|+.+++.. ..+++|++
T Consensus 151 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~~----~~~~L~~~le~~--~~~~~ii~ 224 (368)
T 3uk6_A 151 TQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIE----SFSFLNRALESD--MAPVLIMA 224 (368)
T ss_dssp ---CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBHH----HHHHHHHHTTCT--TCCEEEEE
T ss_pred cccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccChH----HHHHHHHHhhCc--CCCeeeee
Confidence 023334455666655433 12789999999998653 334455555432 33566666
Q ss_pred ecC----------CCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 806 SSS----------VPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 806 ttn----------~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
|++ .++..|++ +.+.++ .++.|++|+.+++..|++..+.
T Consensus 225 t~~~~~~i~~t~~~~~~~l~~--~l~sR~-~~i~~~~~~~~e~~~il~~~~~ 273 (368)
T 3uk6_A 225 TNRGITRIRGTSYQSPHGIPI--DLLDRL-LIVSTTPYSEKDTKQILRIRCE 273 (368)
T ss_dssp ESCSEEECBTSSCEEETTCCH--HHHTTE-EEEEECCCCHHHHHHHHHHHHH
T ss_pred cccceeeeeccCCCCcccCCH--HHHhhc-cEEEecCCCHHHHHHHHHHHHH
Confidence 542 12245655 333332 3578999999999999998877
No 159
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.20 E-value=7.5e-11 Score=131.04 Aligned_cols=128 Identities=23% Similarity=0.286 Sum_probs=92.0
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHEQ 783 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~~~~ 783 (976)
.++||+||||||||++|+++++.+ +.+++.++++.+. ....+..+|..+ ...+++||||||+.+....+..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~-~~~~~~~~~~~~~-------~~~~l~~~l~~~-~~~~~~l~lDEi~~l~~~~~~~ 109 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHEL-GVNLRVTSGPAIE-------KPGDLAAILANS-LEEGDILFIDEIHRLSRQAEEH 109 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHH-TCCEEEECTTTCC-------SHHHHHHHHTTT-CCTTCEEEETTTTSCCHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh-CCCEEEEeccccC-------ChHHHHHHHHHh-ccCCCEEEEECCcccccchHHH
Confidence 469999999999999999999998 6788888866542 122333333321 1457899999999987655544
Q ss_pred HHHHHHHHHhhCC----------------CCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 784 LRAVLLTLLEELP----------------SHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 784 ~~~~l~~ll~~~~----------------~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
|+.+|+... ...+++||+|||.+ ..+++ +.+.++..++.|++|+.+++..|++.++.
T Consensus 110 ----L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~-~~~~~--~l~~R~~~~i~l~~~~~~e~~~~l~~~~~ 182 (324)
T 1hqc_A 110 ----LYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRP-GLITA--PLLSRFGIVEHLEYYTPEELAQGVMRDAR 182 (324)
T ss_dssp ----HHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCC-SSCSC--STTTTCSCEEECCCCCHHHHHHHHHHHHH
T ss_pred ----HHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCc-ccCCH--HHHhcccEEEecCCCCHHHHHHHHHHHHH
Confidence 444444321 01357899999988 66776 44444346899999999999999988776
No 160
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.19 E-value=1.3e-12 Score=156.70 Aligned_cols=168 Identities=21% Similarity=0.179 Sum_probs=98.4
Q ss_pred cccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhH
Q 002045 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWV 459 (976)
Q Consensus 380 ~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~ 459 (976)
.|+|++.+|..|..++.. ..+.......+....+|||+||||||||++|+++|+.+....+... ...++..+.....
T Consensus 296 ~I~G~e~vk~al~~~l~~--g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~-~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 296 SIYGHWELKEALALALFG--GVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTG-KGSTAAGLTAAVV 372 (595)
T ss_dssp TTSCCHHHHHHHTTTTTC--CCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCT-TCSTTTTSEEECS
T ss_pred hhcChHHHHHHHHHHHhC--CCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCC-Cccccccccceee
Confidence 589999988777433221 0000000012234458999999999999999999988742211000 0012222211111
Q ss_pred hHHH----HHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCC-----------CCcEEEE
Q 002045 460 GEAE----RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS-----------RGQVVLI 524 (976)
Q Consensus 460 g~~~----~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~-----------~~~vivI 524 (976)
.... ......+..| ..+||||||||.+. ...+..|+..|+...- ..++.||
T Consensus 373 ~~~~~g~~~~~~G~l~~A---~~gil~IDEid~l~-----------~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vI 438 (595)
T 3f9v_A 373 REKGTGEYYLEAGALVLA---DGGIAVIDEIDKMR-----------DEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVI 438 (595)
T ss_dssp SGGGTSSCSEEECHHHHH---SSSEECCTTTTCCC-----------SHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEE
T ss_pred eccccccccccCCeeEec---CCCcEEeehhhhCC-----------HhHhhhhHHHHhCCEEEEecCCcEEEecCceEEE
Confidence 0000 0000112222 24599999999884 2356678888864221 2367899
Q ss_pred ecCCCcc-------------ccchhhcCCCCCccc-cCCCCCCHHHHHHHHHHHHhc
Q 002045 525 GATNRVD-------------AIDGALRRPGRFDRE-FNFPLPGCEARAEILDIHTRK 567 (976)
Q Consensus 525 ~atn~~~-------------~ld~aL~r~gRf~~~-i~~~~P~~~er~~Il~~~l~~ 567 (976)
+|||++. .|+++|++ ||+.. +..+.|+.+ ...|+++.+..
T Consensus 439 aatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 439 AAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp EEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred EEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 9999986 78999999 99754 455667766 77777776654
No 161
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.18 E-value=9e-12 Score=163.19 Aligned_cols=169 Identities=9% Similarity=0.016 Sum_probs=83.1
Q ss_pred hcccccccccccccccccCCCcccchhhhHHHHHHHhhh--------hcccCC------CCCCchHHHhhhhccCCCCCC
Q 002045 634 EAMSTITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNY--------ISDIFP------PLGMSSELTKLCMLSHGSAIP 699 (976)
Q Consensus 634 ~al~~i~p~~~r~~~~~~~~~~~~~i~~l~~~l~~~~~~--------l~~i~~------~~~~~~~~~~~~~~~~g~~~p 699 (976)
.++....|..++......+.++|.+...+...+..+-.. +..+.. +... ..+.++- ..| .
T Consensus 655 ~a~~~~~ps~L~e~~~~~~~v~~~~~~~i~~a~~~i~~~f~~~~~~~l~~~~~~~~~~i~TG~-~eLD~ll--ggG---G 728 (2050)
T 3cmu_A 655 PNSTTGSTGSMGHTTGAMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGS-LSLDIAL--GAG---G 728 (2050)
T ss_dssp CCC----------------CCSTTHHHHHHHHHHHHHHHHCTTSEEEGGGCTTTSCCEECCSC-HHHHHHH--SSS---S
T ss_pred hhcccCCHHHHHhhhccccCCcHHHHHHHHHHHHHHHHhhccccccchhhhhhcccceeecCC-hHHHHHh--ccC---C
Confidence 566777788888888888899998655555444443211 111100 0011 1222221 000 1
Q ss_pred cccCCceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcccccCCC---CC--------ChHHHHHHHHHHHHh----
Q 002045 700 LVYRPRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPS---AK--------TPEEALVHIFGEARR---- 762 (976)
Q Consensus 700 ~~~~~~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~~~~---~g--------~~e~~~~~~f~~a~~---- 762 (976)
+.+..-++|+|+||+|||+||..+|..+. +.+++.++....+.... .| ..+.++.+++..++.
T Consensus 729 l~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~ 808 (2050)
T 3cmu_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 808 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhc
Confidence 11234589999999999999999998753 33577777654333210 01 122335556655554
Q ss_pred cCCceEeccccchhHH-HH------------HHHHHHHHHHHHhhCCCCCCEEEEEecC
Q 002045 763 TTPSILYIPQFNLWWE-NA------------HEQLRAVLLTLLEELPSHLPILLLGSSS 808 (976)
Q Consensus 763 ~~p~ilfiDEid~l~~-~~------------~~~~~~~l~~ll~~~~~~~~v~vi~ttn 808 (976)
..|++||||.++.+.. .. ..+.++.++..|..+....+|.||+++.
T Consensus 809 ~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Q 867 (2050)
T 3cmu_A 809 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 867 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred cCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 6799999999999874 11 1233455555666665455666665543
No 162
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.17 E-value=1.4e-11 Score=137.21 Aligned_cols=136 Identities=15% Similarity=0.191 Sum_probs=89.0
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHH--H
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWE--N 779 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~--~ 779 (976)
.++||+||||||||++|+++++.+. +.+++.+++..+...+ .+.........|..+.. .++|||||||+.+.. .
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~~ 115 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAM-VEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKER 115 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH-HHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHH-HHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCChH
Confidence 4699999999999999999999863 5688888877664332 12111111122333322 479999999999875 4
Q ss_pred HHHHHHHHHHHHHhhCCCCCCEEEEEecCCCccc---CcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 780 AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAE---VEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 780 ~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~---Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
.+..+...|..+.+ ....+||++++.+ .. +++.+..++....++.|++ +.+++..||+..+.
T Consensus 116 ~~~~l~~~l~~~~~----~~~~iii~~~~~~-~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~ 180 (324)
T 1l8q_A 116 TQIEFFHIFNTLYL----LEKQIILASDRHP-QKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLK 180 (324)
T ss_dssp HHHHHHHHHHHHHH----TTCEEEEEESSCG-GGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----CCCeEEEEecCCh-HHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHH
Confidence 45555555444442 3345666666555 53 3442333333236788999 99999999998886
No 163
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.16 E-value=1.4e-11 Score=144.24 Aligned_cols=125 Identities=19% Similarity=0.285 Sum_probs=86.3
Q ss_pred CceeeccCCCCcHhhHHHHHHHhh---------cCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccc
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHEL---------EKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFN 774 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l---------~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid 774 (976)
.++||+||||||||++|+++|+.+ .+.+++.+++. .. +.|+.+..++.+|..+....|+|||||
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~-~~g~~e~~~~~~~~~~~~~~~~iLfiD--- 274 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TK-YRGEFEDRLKKVMDEIRQAGNIILFID--- 274 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--------------CTTHHHHHHHHHTCCCCEEEEC---
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---cc-ccchHHHHHHHHHHHHHhcCCeEEEEe---
Confidence 479999999999999999999986 35678888877 33 478888899999999999899999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCc----ccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 775 LWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPL----AEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 775 ~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~----~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
......+.| +..+. ...+.||+|||.+. ..+++ +.++++ .+|.|+.|+.+++..||+.++.
T Consensus 275 -----~~~~a~~~L---~~~L~-~g~v~vI~at~~~e~~~~~~~~~--al~~Rf-~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 275 -----AAIDASNIL---KPSLA-RGELQCIGATTLDEYRKYIEKDA--ALERRF-QPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp -----C-----------CCCTT-SSSCEEEEECCTTTTHHHHTTCS--HHHHSE-EEEECCCCCHHHHHHHHHHTTT
T ss_pred -----CchhHHHHH---HHhhc-CCCEEEEecCCHHHHHHHhhcCH--HHHHhC-ccceeCCCCHHHHHHHHHHHHH
Confidence 111222223 33333 45788999999883 14666 444443 3688999999999999997765
No 164
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.16 E-value=4.5e-11 Score=136.07 Aligned_cols=90 Identities=18% Similarity=0.350 Sum_probs=63.4
Q ss_pred CCceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCccccc-CCCCCC-hHHHHHHHHHHH----HhcCCceEeccccchh
Q 002045 703 RPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLS-DPSAKT-PEEALVHIFGEA----RRTTPSILYIPQFNLW 776 (976)
Q Consensus 703 ~~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~-~~~~g~-~e~~~~~~f~~a----~~~~p~ilfiDEid~l 776 (976)
+.++||+||||||||++|+++|+.+ +.+++.+++..+.. +| .|. .+..+..+|..+ ....++|||||||+.+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l-~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l 149 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL-DIPIAISDATSLTEAGY-VGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKI 149 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT-TCCEEEEEGGGCC---------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh-CCCEEEecchhhhhcCc-CCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHH
Confidence 3579999999999999999999998 78999999887753 44 444 355666666543 2446899999999998
Q ss_pred HHHH----------HHHHHHHHHHHHhh
Q 002045 777 WENA----------HEQLRAVLLTLLEE 794 (976)
Q Consensus 777 ~~~~----------~~~~~~~l~~ll~~ 794 (976)
.... +..+.+.|+.+|++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~Ll~~le~ 177 (376)
T 1um8_A 150 SRLSENRSITRDVSGEGVQQALLKIVEG 177 (376)
T ss_dssp --------------CHHHHHHHHHHHHC
T ss_pred hhhcCCCceecccchHHHHHHHHHHhhc
Confidence 7541 12367778888874
No 165
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.15 E-value=2.5e-11 Score=118.68 Aligned_cols=115 Identities=23% Similarity=0.226 Sum_probs=78.4
Q ss_pred cccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhH
Q 002045 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWV 459 (976)
Q Consensus 380 ~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~ 459 (976)
+|+|.+..+..+.+.+... .....+|||+||||||||++|+++++.....+ .+|+ +++..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~--~~~v-~~~~~~~~~-- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQ--GEFV-YRELTPDNA-- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTT--SCCE-EEECCTTTS--
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccC--CCEE-EECCCCCcc--
Confidence 5789898888888776541 13456899999999999999999998764333 4566 777765443
Q ss_pred hHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCc
Q 002045 460 GEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (976)
Q Consensus 460 g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~ 530 (976)
.....+|..+. .++|||||||.|. ..++..|+..|.. ...++.||++||.+
T Consensus 66 ----~~~~~~~~~a~---~g~l~ldei~~l~-----------~~~q~~Ll~~l~~--~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 ----PQLNDFIALAQ---GGTLVLSHPEHLT-----------REQQYHLVQLQSQ--EHRPFRLIGIGDTS 116 (145)
T ss_dssp ----SCHHHHHHHHT---TSCEEEECGGGSC-----------HHHHHHHHHHHHS--SSCSSCEEEEESSC
T ss_pred ----hhhhcHHHHcC---CcEEEEcChHHCC-----------HHHHHHHHHHHhh--cCCCEEEEEECCcC
Confidence 12334455443 4599999999884 3455667777753 23456778888763
No 166
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.15 E-value=5.6e-10 Score=128.16 Aligned_cols=215 Identities=16% Similarity=0.104 Sum_probs=136.6
Q ss_pred CCcccccChHHHHHHHHHHH-HcccCChhHHhhcCC-CCCceEEE--EcCCCChHHHHHHHHHHHHhhc----CCcEEEE
Q 002045 376 VSFDDIGGLSEYIDALKEMV-FFPLLYPDFFASYHI-TPPRGVLL--CGPPGTGKTLIARALACAASKA----GQKVSFY 447 (976)
Q Consensus 376 ~~~~~i~G~~~~k~~l~~~v-~~pl~~~~~~~~~~~-~~~~~vLL--~GppGtGKT~laralA~~l~~~----~~~~~~~ 447 (976)
...+.++|.+..++.|.+++ ...+. +. ..+..++| +||+|||||++++++++.+... +....++
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~--------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~ 90 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLS--------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQA 90 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHT--------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhc--------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEE
Confidence 34467999999999998876 43110 10 23568999 9999999999999999987542 1124556
Q ss_pred Eecchh------HHhhhH----------hH-HHHHHHHHHHHHH-hcCCcEEEEccccccCCCCCChhhhhHHHHHHHHH
Q 002045 448 MRKGAD------VLSKWV----------GE-AERQLKLLFEEAQ-RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLL 509 (976)
Q Consensus 448 ~~~~~~------l~~~~~----------g~-~~~~l~~~f~~a~-~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll 509 (976)
.+++.. ++.... +. ....+..+..... ...|.||||||+|.+...... ...++..|+
T Consensus 91 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~-----~~~~l~~l~ 165 (412)
T 1w5s_A 91 YVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI-----AAEDLYTLL 165 (412)
T ss_dssp EEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTS-----CHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCc-----chHHHHHHH
Confidence 666532 221111 10 1122223332222 345889999999988532110 134455555
Q ss_pred HHhhccCC-C--CcEEEEecCCCcc---ccc---hhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcC--CCCCCHHHHH
Q 002045 510 ALMDGLDS-R--GQVVLIGATNRVD---AID---GALRRPGRFDREFNFPLPGCEARAEILDIHTRKW--KQPPSRELKS 578 (976)
Q Consensus 510 ~~ld~~~~-~--~~vivI~atn~~~---~ld---~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~--~~~~~~~~l~ 578 (976)
..+..... . .++.||++++.+. .++ +.+.+ +|...+.|++++.++..+|+...+... ...++.+.+.
T Consensus 166 ~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~ 243 (412)
T 1w5s_A 166 RVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLE 243 (412)
T ss_dssp THHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHH
T ss_pred HHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHH
Confidence 55554321 2 5788888887654 244 55666 565559999999999999998766532 2346777888
Q ss_pred HHHHHcc------CCCHHHHHHHHHHHHHHHHHh
Q 002045 579 ELAASCV------GYCGADLKALCTEAAIRAFRE 606 (976)
Q Consensus 579 ~lA~~t~------G~s~~dI~~l~~~A~~~a~~~ 606 (976)
.++..+. | .+..+..++..+...+..+
T Consensus 244 ~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~ 276 (412)
T 1w5s_A 244 LISDVYGEDKGGDG-SARRAIVALKMACEMAEAM 276 (412)
T ss_dssp HHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHc
Confidence 8888888 6 4667788888777665543
No 167
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.15 E-value=1e-10 Score=130.11 Aligned_cols=128 Identities=13% Similarity=0.143 Sum_probs=91.6
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhc-----CCceEeccccchhH-
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRT-----TPSILYIPQFNLWW- 777 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~-----~p~ilfiDEid~l~- 777 (976)
..+||+||||||||++|+++++.+ +.+++.++++.. + ...++.++..+... .++||||||+|.+.
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l-~~~~~~i~~~~~------~--~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~ 119 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDV-NADMMFVNGSDC------K--IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL 119 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHT-TEEEEEEETTTC------C--HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHh-CCCEEEEccccc------C--HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc
Confidence 347888999999999999999998 678888885431 2 34556555543333 56899999999997
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHHHHH
Q 002045 778 ENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAAV 850 (976)
Q Consensus 778 ~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~~~~ 850 (976)
.... +.|+.+|+... ..+.||+|||.+ ..+++ +.+.++ .++.|++|+.++|.+|++.++....
T Consensus 120 ~~~~----~~L~~~le~~~--~~~~iI~~~n~~-~~l~~--~l~sR~-~~i~~~~~~~~e~~~il~~~~~~l~ 182 (324)
T 3u61_B 120 AESQ----RHLRSFMEAYS--SNCSIIITANNI-DGIIK--PLQSRC-RVITFGQPTDEDKIEMMKQMIRRLT 182 (324)
T ss_dssp HHHH----HHHHHHHHHHG--GGCEEEEEESSG-GGSCT--THHHHS-EEEECCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHhCC--CCcEEEEEeCCc-cccCH--HHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 5443 34555555433 356677788988 56776 433333 4789999999999999888776543
No 168
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.15 E-value=4.7e-11 Score=131.87 Aligned_cols=139 Identities=12% Similarity=0.121 Sum_probs=91.9
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcccccCC-----------CCCChHHHHHHHHHHHHhcCCceEec
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDP-----------SAKTPEEALVHIFGEARRTTPSILYI 770 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~~~-----------~~g~~e~~~~~~f~~a~~~~p~ilfi 770 (976)
..+||+||||||||++|++||+.+. +.+++.++++.+.... +.|... ...+........++||||
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~--~~~~~~~~~~~~~~vl~l 125 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILF 125 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTT--CCHHHHHHHHCSSEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccc--cchHHHHHHhCCCeEEEE
Confidence 3699999999999999999999863 3468888876654321 011110 012333334445689999
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhCC---------CCCCEEEEEecCCC-------------------------cccCcC
Q 002045 771 PQFNLWWENAHEQLRAVLLTLLEELP---------SHLPILLLGSSSVP-------------------------LAEVEG 816 (976)
Q Consensus 771 DEid~l~~~~~~~~~~~l~~ll~~~~---------~~~~v~vi~ttn~~-------------------------~~~Ld~ 816 (976)
|||+.+.... .+.|+.+|+... ...+++||+|||.. ...+++
T Consensus 126 DEi~~l~~~~----~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~ 201 (311)
T 4fcw_A 126 DAIEKAHPDV----FNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRP 201 (311)
T ss_dssp ETGGGSCHHH----HHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCH
T ss_pred eChhhcCHHH----HHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCH
Confidence 9999986644 445666665432 12478899999982 123333
Q ss_pred CCCCCcCCccEEEecCCCHHHHHHHHHHHHHHHH
Q 002045 817 DPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAAV 850 (976)
Q Consensus 817 ~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~~~~ 850 (976)
..+.+...++.|.+|+.+++..|++.++....
T Consensus 202 --~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~ 233 (311)
T 4fcw_A 202 --EFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLR 233 (311)
T ss_dssp --HHHTTCSEEEECCCCCHHHHHHHHHHHTHHHH
T ss_pred --HHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 22233336788999999999999999887643
No 169
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.15 E-value=4.3e-11 Score=138.67 Aligned_cols=125 Identities=19% Similarity=0.289 Sum_probs=85.7
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHh----cCCceEeccccchhHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARR----TTPSILYIPQFNLWWEN 779 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~----~~p~ilfiDEid~l~~~ 779 (976)
+++||+||||||||++|++|++.+ +.+|+.++.. +.....++.+|..|.. ..++|||||||+.+...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~-~~~f~~l~a~--------~~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~ 121 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA-NADVERISAV--------TSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS 121 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT-TCEEEEEETT--------TCCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC---
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh-CCCeEEEEec--------cCCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH
Confidence 479999999999999999999998 6778877632 2234567777777653 45799999999998765
Q ss_pred HHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 780 AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 780 ~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
.++ .|+..|+. ...++|.+||..+...+++ +.+.+. .++.|.+|+.+++..|++..+.
T Consensus 122 ~q~----~LL~~le~---~~v~lI~att~n~~~~l~~--aL~sR~-~v~~l~~l~~edi~~il~~~l~ 179 (447)
T 3pvs_A 122 QQD----AFLPHIED---GTITFIGATTENPSFELNS--ALLSRA-RVYLLKSLSTEDIEQVLTQAME 179 (447)
T ss_dssp -------CCHHHHHT---TSCEEEEEESSCGGGSSCH--HHHTTE-EEEECCCCCHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHhc---CceEEEecCCCCcccccCH--HHhCce-eEEeeCCcCHHHHHHHHHHHHH
Confidence 443 34445543 3344444555555345555 333332 4788999999999999998887
No 170
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.14 E-value=1.1e-10 Score=132.58 Aligned_cols=141 Identities=13% Similarity=0.074 Sum_probs=90.4
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc--------CCCeeecCCcccccCC---------------CCCC-hHHHHHHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE--------KFPVHSLGLPALLSDP---------------SAKT-PEEALVHIFGE 759 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~--------~~~~~~~~~~~l~~~~---------------~~g~-~e~~~~~~f~~ 759 (976)
.+++|+||||||||++|+++++.+. +.+++.+++....+.+ ..|. ....+..++..
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 124 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKR 124 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 4799999999999999999999762 4567778765422100 1122 23335555555
Q ss_pred HHhc-CCceEeccccchhHHHH-HHHHHHHHHHHHhhCCC---CCCEEEEEecCCCc--ccCcCCCCCCcCCccEEEecC
Q 002045 760 ARRT-TPSILYIPQFNLWWENA-HEQLRAVLLTLLEELPS---HLPILLLGSSSVPL--AEVEGDPSTVFPLRSVYQVEK 832 (976)
Q Consensus 760 a~~~-~p~ilfiDEid~l~~~~-~~~~~~~l~~ll~~~~~---~~~v~vi~ttn~~~--~~Ld~~~~~~~~~r~~i~v~~ 832 (976)
+... .|+||||||++.+.... .. ..|..++..+.. ..++.||++||.++ ..+++.+..++. ..++.|++
T Consensus 125 l~~~~~~~vlilDEi~~l~~~~~~~---~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~-~~~i~l~~ 200 (387)
T 2v1u_A 125 LSRLRGIYIIVLDEIDFLPKRPGGQ---DLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLG-EVELVFPP 200 (387)
T ss_dssp HTTSCSEEEEEEETTTHHHHSTTHH---HHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTT-SEECCBCC
T ss_pred HhccCCeEEEEEccHhhhcccCCCC---hHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCC-CeEEeeCC
Confidence 5433 37899999999987642 22 334455554432 45788888888772 233332222222 14788999
Q ss_pred CCHHHHHHHHHHHHHH
Q 002045 833 PSTEDRSLFLGRLIEA 848 (976)
Q Consensus 833 P~~~er~~i~~~~l~~ 848 (976)
|+.+++..||+..+..
T Consensus 201 l~~~~~~~il~~~~~~ 216 (387)
T 2v1u_A 201 YTAPQLRDILETRAEE 216 (387)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988873
No 171
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.14 E-value=1.1e-10 Score=140.83 Aligned_cols=220 Identities=23% Similarity=0.301 Sum_probs=134.8
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecch-
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA- 452 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~- 452 (976)
+...|++++|++.+++.|...+.. ..+++|+||||||||++|++||..+........++..+..
T Consensus 36 rp~~l~~i~G~~~~l~~l~~~i~~---------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~ 100 (604)
T 3k1j_A 36 PEKLIDQVIGQEHAVEVIKTAANQ---------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPED 100 (604)
T ss_dssp CSSHHHHCCSCHHHHHHHHHHHHT---------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTC
T ss_pred cccccceEECchhhHhhccccccC---------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccc
Confidence 456789999999999888776643 2589999999999999999999987533211111100000
Q ss_pred ---------------hHHhhhHhH--------------------------------------HHHHHHHHHH--------
Q 002045 453 ---------------DVLSKWVGE--------------------------------------AERQLKLLFE-------- 471 (976)
Q Consensus 453 ---------------~l~~~~~g~--------------------------------------~~~~l~~~f~-------- 471 (976)
.+....... .......+|.
T Consensus 101 ~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~ 180 (604)
T 3k1j_A 101 ENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQ 180 (604)
T ss_dssp TTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC-
T ss_pred ccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhh
Confidence 000000000 0000011111
Q ss_pred ---------------HHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC-------------------C
Q 002045 472 ---------------EAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-------------------S 517 (976)
Q Consensus 472 ---------------~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~-------------------~ 517 (976)
.+....+.+|||||++.|. ..++..|+..|+.-. .
T Consensus 181 ~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~-----------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~ 249 (604)
T 3k1j_A 181 SGGLGTPAHERVEPGMIHRAHKGVLFIDEIATLS-----------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPV 249 (604)
T ss_dssp ---CCCCGGGGEECCHHHHTTTSEEEETTGGGSC-----------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCE
T ss_pred cCCccccccccccCceeeecCCCEEEEechhhCC-----------HHHHHHHHHHHHcCcEEecccccccccccCCCCcc
Confidence 0112245699999999873 345667777775211 1
Q ss_pred CCcEEEEecCCCc--cccchhhcCCCCCc---cccCCCC--C-CHHHHHHHHHHHHhc-----CCCCCCHHHHHHHHHHc
Q 002045 518 RGQVVLIGATNRV--DAIDGALRRPGRFD---REFNFPL--P-GCEARAEILDIHTRK-----WKQPPSRELKSELAASC 584 (976)
Q Consensus 518 ~~~vivI~atn~~--~~ld~aL~r~gRf~---~~i~~~~--P-~~~er~~Il~~~l~~-----~~~~~~~~~l~~lA~~t 584 (976)
..++.||++||+. ..++++|++ ||. ..+.|+. + ..+....+++.+... ....++.+.+..|....
T Consensus 250 p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~ 327 (604)
T 3k1j_A 250 PCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREA 327 (604)
T ss_dssp ECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHH
T ss_pred ceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHH
Confidence 1367899999986 579999999 885 3455543 2 345566666544432 23467888888887754
Q ss_pred ---cC------CCHHHHHHHHHHHHHHHHHhhCCccccCcccccccccceeEeehhhhhccc
Q 002045 585 ---VG------YCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMS 637 (976)
Q Consensus 585 ---~G------~s~~dI~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~ 637 (976)
.| .+.+++.++++.|...|..+... .|+.+|+..|+.
T Consensus 328 ~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~----------------~I~~edv~~A~~ 373 (604)
T 3k1j_A 328 QKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKK----------------YVEREDVIEAVK 373 (604)
T ss_dssp HHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCS----------------SBCHHHHHHHHH
T ss_pred hhhhccccccccCHHHHHHHHHHHHHHHHhcCcc----------------cccHHHHHHHHH
Confidence 45 26899999999987766554322 367777777763
No 172
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.14 E-value=1.3e-11 Score=143.23 Aligned_cols=167 Identities=17% Similarity=0.211 Sum_probs=101.5
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc----CCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHH-
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE----KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWE- 778 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~----~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~- 778 (976)
.+++|+||||||||+||++|++.+. +.+++.+++..+...+ .+.........|.......|+||||||++.+..
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDL-VDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHH-HHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH-HHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 4699999999999999999999862 5677888766654321 111111111123333333689999999999985
Q ss_pred -HHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCccc---CcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHHHHHhhhh
Q 002045 779 -NAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAE---VEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAAVSVVL 854 (976)
Q Consensus 779 -~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~---Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~~~~~~~~ 854 (976)
..+..++..|..+.+ ....+||+ |+.++.. +++.+..+|....++.|++|+.++|..||+..+...
T Consensus 210 ~~~q~~l~~~l~~l~~----~~~~iIit-t~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~----- 279 (440)
T 2z4s_A 210 TGVQTELFHTFNELHD----SGKQIVIC-SDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIE----- 279 (440)
T ss_dssp HHHHHHHHHHHHHHHT----TTCEEEEE-ESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHH-----
T ss_pred hHHHHHHHHHHHHHHH----CCCeEEEE-ECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHc-----
Confidence 455555555554442 33455554 5554355 333223333323678899999999999999888631
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHH
Q 002045 855 EGRSKKPQESVSLPELPKVPTVESGPKASELKAKV 889 (976)
Q Consensus 855 ~~~~~~~~~~~dl~~La~~~~~~sg~s~aelk~~~ 889 (976)
+.. ..+..+..|+... +.+.+++..++
T Consensus 280 ---~~~-i~~e~l~~la~~~----~gn~R~l~~~L 306 (440)
T 2z4s_A 280 ---HGE-LPEEVLNFVAENV----DDNLRRLRGAI 306 (440)
T ss_dssp ---TCC-CCTTHHHHHHHHC----CSCHHHHHHHH
T ss_pred ---CCC-CCHHHHHHHHHhc----CCCHHHHHHHH
Confidence 111 2222244455443 23667777766
No 173
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.13 E-value=1e-11 Score=121.11 Aligned_cols=112 Identities=18% Similarity=0.233 Sum_probs=78.9
Q ss_pred cccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhH
Q 002045 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWV 459 (976)
Q Consensus 380 ~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~ 459 (976)
+++|.+..++.+.+.+... . ..+.+|||+||||||||++|++++.... +|+.+++..+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~-------~----~~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~~~~~~- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAA-------A----KRTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVEYLIDM- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHH-------H----TCSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTTHHHHC-
T ss_pred CceeCCHHHHHHHHHHHHH-------h----CCCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhhCChHh-
Confidence 4789999988888877541 1 3456799999999999999999998753 78888988766543
Q ss_pred hHHHHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCc
Q 002045 460 GEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (976)
Q Consensus 460 g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~ 530 (976)
...+|..+. +++|||||+|.+. ...+..|+..|+... ..++.||++||.+
T Consensus 67 ------~~~~~~~a~---~~~l~lDei~~l~-----------~~~q~~Ll~~l~~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 ------PMELLQKAE---GGVLYVGDIAQYS-----------RNIQTGITFIIGKAE-RCRVRVIASCSYA 116 (143)
T ss_dssp ------HHHHHHHTT---TSEEEEEECTTCC-----------HHHHHHHHHHHHHHT-TTTCEEEEEEEEC
T ss_pred ------hhhHHHhCC---CCeEEEeChHHCC-----------HHHHHHHHHHHHhCC-CCCEEEEEecCCC
Confidence 344555443 4599999999884 234556677776432 3457788888763
No 174
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.13 E-value=6.4e-12 Score=127.19 Aligned_cols=124 Identities=19% Similarity=0.243 Sum_probs=85.3
Q ss_pred CceeeccCCCCcHhhHHHHHHHhh---------cCCCeeecCCcccccC-CCCCChHHHHHHHHHHHHhc-CCceEeccc
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHEL---------EKFPVHSLGLPALLSD-PSAKTPEEALVHIFGEARRT-TPSILYIPQ 772 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l---------~~~~~~~~~~~~l~~~-~~~g~~e~~~~~~f~~a~~~-~p~ilfiDE 772 (976)
.++||+||||||||++|+++++.+ .+.+++.+++..++.. .+.|.....+..++..+... .|+||||||
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe 123 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDE 123 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeC
Confidence 469999999999999999999986 3567788877666531 12456666788888777665 678999999
Q ss_pred cchhH-----HHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCc----ccCcCCCCCCcCCccEEEecCCC
Q 002045 773 FNLWW-----ENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPL----AEVEGDPSTVFPLRSVYQVEKPS 834 (976)
Q Consensus 773 id~l~-----~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~----~~Ld~~~~~~~~~r~~i~v~~P~ 834 (976)
++.+. ......+.+.|..+++ ...++||++||.+. ..+++ +.++++ ..+.|++|+
T Consensus 124 ~~~l~~~~~~~~~~~~~~~~l~~~~~----~~~~~ii~~~~~~~~~~~~~~~~--~l~~R~-~~i~i~~p~ 187 (187)
T 2p65_A 124 IHTVVGAGAVAEGALDAGNILKPMLA----RGELRCIGATTVSEYRQFIEKDK--ALERRF-QQILVEQPS 187 (187)
T ss_dssp GGGGSSSSSSCTTSCCTHHHHHHHHH----TTCSCEEEEECHHHHHHHTTTCH--HHHHHE-EEEECCSCC
T ss_pred HHHhcccccccccchHHHHHHHHHHh----cCCeeEEEecCHHHHHHHHhccH--HHHHhc-CcccCCCCC
Confidence 99997 2222344555555554 35677888888762 13554 333332 257788875
No 175
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.11 E-value=3.9e-10 Score=152.84 Aligned_cols=167 Identities=19% Similarity=0.196 Sum_probs=101.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCC
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPV 492 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~ 492 (976)
..++++.||+|||||.+|+++|+.++ ..++.++|.+-+.. ..+..+|..+... +++++||||+.+-+.
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg-----~~~v~~nc~e~ld~------~~lg~~~~g~~~~-Gaw~~~DE~nr~~~e 712 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLG-----RVVVVFNCDDSFDY------QVLSRLLVGITQI-GAWGCFDEFNRLDEK 712 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTT-----CCCEEEETTSSCCH------HHHHHHHHHHHHH-TCEEEEETTTSSCHH
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhC-----CcEEEEECCCCCCh------hHhhHHHHHHHhc-CCEeeehhhhhcChH
Confidence 35799999999999999999999997 45667777654321 2235556555544 369999999987421
Q ss_pred CCChhhhhHHHHHHHHHHHhhc-----------cCCCCcEEEEecCCC----ccccchhhcCCCCCccccCCCCCCHHHH
Q 002045 493 RSSKQEQIHNSIVSTLLALMDG-----------LDSRGQVVLIGATNR----VDAIDGALRRPGRFDREFNFPLPGCEAR 557 (976)
Q Consensus 493 r~~~~~~~~~~~~~~Ll~~ld~-----------~~~~~~vivI~atn~----~~~ld~aL~r~gRf~~~i~~~~P~~~er 557 (976)
.-......+..++..+.. +.-...+.|++|.|+ ...|+++|++ || +.|.+..|+.+..
T Consensus 713 ----vLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i 785 (2695)
T 4akg_A 713 ----VLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTI 785 (2695)
T ss_dssp ----HHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHH
Confidence 001111122222333311 111235667788884 3458999988 77 6799999999988
Q ss_pred HHHHHHHHhcCCCCCCHHHH-------HHHHHHcc-----CCCHHHHHHHHHHHHH
Q 002045 558 AEILDIHTRKWKQPPSRELK-------SELAASCV-----GYCGADLKALCTEAAI 601 (976)
Q Consensus 558 ~~Il~~~l~~~~~~~~~~~l-------~~lA~~t~-----G~s~~dI~~l~~~A~~ 601 (976)
.+|+-.... ......+. ..+.+... .|.-+.++.++..|..
T Consensus 786 ~ei~l~s~G---f~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~ 838 (2695)
T 4akg_A 786 AEMILQIMG---FEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSP 838 (2695)
T ss_dssp HHHHHHHHH---CSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHhcC---CCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHH
Confidence 888643221 21111111 12222222 2677888888876653
No 176
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.10 E-value=6.6e-11 Score=140.25 Aligned_cols=178 Identities=12% Similarity=0.084 Sum_probs=105.4
Q ss_pred CCcccchhhhHHHHHHHhhhhcccCCCCCCchHHHhhhhccCCCCCCcccCCceeeccCCCCcHhhHHHHHHHhhcCCCe
Q 002045 653 PLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFPV 732 (976)
Q Consensus 653 ~~~~~~i~~l~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~Ll~G~pGtGKT~lA~aia~~l~~~~~ 732 (976)
+..+.++.|.+..++.+..++.... .....++...|.. +...++++||+||||||||++|+++|+++ +.++
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~-------~~~~~~~~~~g~~-~~~~~~~lLL~GppGtGKTtla~~la~~l-~~~~ 105 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWE-------NSKKNSFKHAGKD-GSGVFRAAMLYGPPGIGKTTAAHLVAQEL-GYDI 105 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHH-------HHHHTTTCCCCTT-STTSCSEEEEECSTTSSHHHHHHHHHHHT-TCEE
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhH-------hhchhhccccCcc-CCCCCcEEEEECCCCCCHHHHHHHHHHHc-CCCE
Confidence 3455666666666776666643210 0011111111111 11124579999999999999999999998 7899
Q ss_pred eecCCcccccCCCCCCh------HHHHHHHHHHH-----HhcCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCE
Q 002045 733 HSLGLPALLSDPSAKTP------EEALVHIFGEA-----RRTTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPI 801 (976)
Q Consensus 733 ~~~~~~~l~~~~~~g~~------e~~~~~~f~~a-----~~~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v 801 (976)
+.++++.+.+.+...+. ...+..+|..+ ....++||||||||.+..... ..++.|..+++.. ..++
T Consensus 106 i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~-~~l~~L~~~l~~~--~~~i 182 (516)
T 1sxj_A 106 LEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR-GGVGQLAQFCRKT--STPL 182 (516)
T ss_dssp EEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST-THHHHHHHHHHHC--SSCE
T ss_pred EEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH-HHHHHHHHHHHhc--CCCE
Confidence 99998765432110000 00012233322 235678999999999976433 2345566666652 3355
Q ss_pred EEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 802 LLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 802 ~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
++|+++... ..|.+ +++...++.|++|+.+++.++++.++.
T Consensus 183 Ili~~~~~~-~~l~~----l~~r~~~i~f~~~~~~~~~~~L~~i~~ 223 (516)
T 1sxj_A 183 ILICNERNL-PKMRP----FDRVCLDIQFRRPDANSIKSRLMTIAI 223 (516)
T ss_dssp EEEESCTTS-STTGG----GTTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred EEEEcCCCC-ccchh----hHhceEEEEeCCCCHHHHHHHHHHHHH
Confidence 555544332 23332 223236888999999999999988776
No 177
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.09 E-value=2.8e-11 Score=118.07 Aligned_cols=93 Identities=14% Similarity=0.206 Sum_probs=68.6
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHEQ 783 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~~~~ 783 (976)
.++||+||||||||++|++|++.+ . +|+.+++..+...+ ...+|..|. +++||||||+.+....+..
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~-~-~~~~~~~~~~~~~~--------~~~~~~~a~---~~~l~lDei~~l~~~~q~~ 94 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNG-T-PWVSPARVEYLIDM--------PMELLQKAE---GGVLYVGDIAQYSRNIQTG 94 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTT-S-CEECCSSTTHHHHC--------HHHHHHHTT---TSEEEEEECTTCCHHHHHH
T ss_pred CcEEEECCCCccHHHHHHHHHHhC-C-CeEEechhhCChHh--------hhhHHHhCC---CCeEEEeChHHCCHHHHHH
Confidence 469999999999999999999987 3 89999887665332 455666553 5799999999998765555
Q ss_pred HHHHHHHHHhhCCCCCCEEEEEecCCCcccC
Q 002045 784 LRAVLLTLLEELPSHLPILLLGSSSVPLAEV 814 (976)
Q Consensus 784 ~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~L 814 (976)
+ +.+|+... ...+.||+|||.++..+
T Consensus 95 L----l~~l~~~~-~~~~~iI~~tn~~~~~~ 120 (143)
T 3co5_A 95 I----TFIIGKAE-RCRVRVIASCSYAAGSD 120 (143)
T ss_dssp H----HHHHHHHT-TTTCEEEEEEEECTTTC
T ss_pred H----HHHHHhCC-CCCEEEEEecCCCHHHH
Confidence 4 44444332 34677888999774544
No 178
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.08 E-value=1.6e-10 Score=127.25 Aligned_cols=147 Identities=9% Similarity=0.104 Sum_probs=104.5
Q ss_pred ChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-CCcEEEEEecchhHHhhhHhH
Q 002045 383 GLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYMRKGADVLSKWVGE 461 (976)
Q Consensus 383 G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~~~~~~l~~~~~g~ 461 (976)
|++++++.|+..+.. + . ..++|||||||+|||++|+++|+.+... .....++.++++.- ..
T Consensus 1 g~~~~~~~L~~~i~~-----------~-~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~---~~-- 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-----------S-E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE---NI-- 62 (305)
T ss_dssp ---CHHHHHHHHHHT-----------C-S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS---CB--
T ss_pred ChHHHHHHHHHHHHC-----------C-C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC---CC--
Confidence 567778888877654 1 2 4589999999999999999999875421 11234556665420 01
Q ss_pred HHHHHHHHHHHHHhc----CCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCccccchhh
Q 002045 462 AERQLKLLFEEAQRN----QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGAL 537 (976)
Q Consensus 462 ~~~~l~~~f~~a~~~----~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~aL 537 (976)
.-..++.+++.+... ...|+||||+|.|. ....+.|+..|+. ....+++|.+|+.+..|.+++
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~lt-----------~~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~~tI 129 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT-----------QQAANAFLKALEE--PPEYAVIVLNTRRWHYLLPTI 129 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC-----------HHHHHHTHHHHHS--CCTTEEEEEEESCGGGSCHHH
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHhC-----------HHHHHHHHHHHhC--CCCCeEEEEEECChHhChHHH
Confidence 123356666666432 24699999999984 3456789999984 445677777888889999999
Q ss_pred cCCCCCccccCCCCCCHHHHHHHHHHHH
Q 002045 538 RRPGRFDREFNFPLPGCEARAEILDIHT 565 (976)
Q Consensus 538 ~r~gRf~~~i~~~~P~~~er~~Il~~~l 565 (976)
++ | ++.|++|+.++..+++...+
T Consensus 130 ~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 130 KS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred Hc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 99 7 89999999999999998776
No 179
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.07 E-value=3.8e-11 Score=117.32 Aligned_cols=94 Identities=17% Similarity=0.094 Sum_probs=67.2
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAH 781 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~~ 781 (976)
..+||+||||||||++|++|++... +.+|+ ++++.+... .....+|..| .+++||||||+.+....+
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~-------~~~~~~~~~a---~~g~l~ldei~~l~~~~q 93 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA-------PQLNDFIALA---QGGTLVLSHPEHLTREQQ 93 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-------SCHHHHHHHH---TTSCEEEECGGGSCHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-------hhhhcHHHHc---CCcEEEEcChHHCCHHHH
Confidence 3599999999999999999999742 46788 888766543 1244556555 457999999999987666
Q ss_pred HHHHHHHHHHHhhCCCCCCEEEEEecCCCcccC
Q 002045 782 EQLRAVLLTLLEELPSHLPILLLGSSSVPLAEV 814 (976)
Q Consensus 782 ~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~L 814 (976)
..++ .+|... ...+.||+|||.++..+
T Consensus 94 ~~Ll----~~l~~~--~~~~~~I~~t~~~~~~~ 120 (145)
T 3n70_A 94 YHLV----QLQSQE--HRPFRLIGIGDTSLVEL 120 (145)
T ss_dssp HHHH----HHHHSS--SCSSCEEEEESSCHHHH
T ss_pred HHHH----HHHhhc--CCCEEEEEECCcCHHHH
Confidence 5544 444332 33567888999875544
No 180
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.06 E-value=7.7e-10 Score=114.85 Aligned_cols=127 Identities=17% Similarity=0.157 Sum_probs=85.0
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc----CCCeeecCCcccccCCCCCChHHHHHHHHHHHH------hcCCceEecccc
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE----KFPVHSLGLPALLSDPSAKTPEEALVHIFGEAR------RTTPSILYIPQF 773 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~----~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~------~~~p~ilfiDEi 773 (976)
+++||+||||||||++|+++++.+. ...++.+++.... ....+...+.... ...++||||||+
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~ 111 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER-------GIDVVRHKIKEFARTAPIGGAPFKIIFLDEA 111 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTT-------CHHHHHHHHHHHHTSCCSTTCSCEEEEEETG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccccc-------ChHHHHHHHHHHhcccCCCccCceEEEEeCh
Confidence 3599999999999999999998752 2345655543322 1223333332222 246789999999
Q ss_pred chhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 774 NLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 774 d~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
+.+..... ..|..+++... ..+.||+|||.+ ..+++ +.+.++ .++.|++|+.++..++++.++.
T Consensus 112 ~~l~~~~~----~~l~~~l~~~~--~~~~~i~~~~~~-~~~~~--~l~~r~-~~i~~~~~~~~~~~~~l~~~~~ 175 (226)
T 2chg_A 112 DALTADAQ----AALRRTMEMYS--KSCRFILSCNYV-SRIIE--PIQSRC-AVFRFKPVPKEAMKKRLLEICE 175 (226)
T ss_dssp GGSCHHHH----HHHHHHHHHTT--TTEEEEEEESCG-GGSCH--HHHTTS-EEEECCCCCHHHHHHHHHHHHH
T ss_pred hhcCHHHH----HHHHHHHHhcC--CCCeEEEEeCCh-hhcCH--HHHHhC-ceeecCCCCHHHHHHHHHHHHH
Confidence 99876443 34556666533 366777788877 55555 323232 3788999999999999998876
No 181
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.03 E-value=1.1e-09 Score=124.07 Aligned_cols=142 Identities=11% Similarity=0.132 Sum_probs=92.0
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc-----CCCeeecCCcccc----------cCC-----CCCC-hHHHHHHHHHHHHh
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE-----KFPVHSLGLPALL----------SDP-----SAKT-PEEALVHIFGEARR 762 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~-----~~~~~~~~~~~l~----------~~~-----~~g~-~e~~~~~~f~~a~~ 762 (976)
..++|+||||||||+++++++..+. +.+++.+++.... ... ..|. ....+..++.....
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 125 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRD 125 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc
Confidence 4699999999999999999999763 4567777754221 100 0122 23345556655554
Q ss_pred cC-CceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCc--ccCcCCCCCCcCCccEEEecCCCHHHHH
Q 002045 763 TT-PSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPL--AEVEGDPSTVFPLRSVYQVEKPSTEDRS 839 (976)
Q Consensus 763 ~~-p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~--~~Ld~~~~~~~~~r~~i~v~~P~~~er~ 839 (976)
.. |+||||||++.+.......++..|...++.+ ...++.||++||.+. ..+++.+..++. ..++.|++++.++..
T Consensus 126 ~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~-~~~~~~~I~~~~~~~~~~~~~~~~~~r~~-~~~i~l~~l~~~~~~ 203 (386)
T 2qby_A 126 YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV-NKSKISFIGITNDVKFVDLLDPRVKSSLS-EEEIIFPPYNAEELE 203 (386)
T ss_dssp CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC-CC--EEEEEEESCGGGGGGCTTHHHHTTT-TEEEEECCCCHHHHH
T ss_pred cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc-CCCeEEEEEEECCCChHhhhCHHHhccCC-CeeEEeCCCCHHHHH
Confidence 43 8999999999987543234445555556554 345788888888762 233431112222 147889999999999
Q ss_pred HHHHHHHH
Q 002045 840 LFLGRLIE 847 (976)
Q Consensus 840 ~i~~~~l~ 847 (976)
+||+..+.
T Consensus 204 ~il~~~~~ 211 (386)
T 2qby_A 204 DILTKRAQ 211 (386)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998776
No 182
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.03 E-value=3.5e-10 Score=128.60 Aligned_cols=136 Identities=18% Similarity=0.155 Sum_probs=89.1
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc----------CCCeeecCCcccc-c-------------CC---CCCC-hHHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE----------KFPVHSLGLPALL-S-------------DP---SAKT-PEEALVH 755 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~----------~~~~~~~~~~~l~-~-------------~~---~~g~-~e~~~~~ 755 (976)
..++|+||||||||++|+++++.+. +.+++.+++.... + +. ..|. ....+..
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 125 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDK 125 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHH
Confidence 4799999999999999999999751 5677887754432 0 00 0122 2334555
Q ss_pred HHHHHHhcCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCc--ccCcCCCCCCcCCccEEEecCC
Q 002045 756 IFGEARRTTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPL--AEVEGDPSTVFPLRSVYQVEKP 833 (976)
Q Consensus 756 ~f~~a~~~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~--~~Ld~~~~~~~~~r~~i~v~~P 833 (976)
++..+....+ ||||||+|.+.......+ .+..++... .++.||+|||.++ ..+++ +.+.++..++.|++|
T Consensus 126 l~~~l~~~~~-vlilDEi~~l~~~~~~~~--~l~~l~~~~---~~~~iI~~t~~~~~~~~l~~--~l~sr~~~~i~l~~l 197 (384)
T 2qby_B 126 IKNGTRNIRA-IIYLDEVDTLVKRRGGDI--VLYQLLRSD---ANISVIMISNDINVRDYMEP--RVLSSLGPSVIFKPY 197 (384)
T ss_dssp HHHHHSSSCE-EEEEETTHHHHHSTTSHH--HHHHHHTSS---SCEEEEEECSSTTTTTTSCH--HHHHTCCCEEEECCC
T ss_pred HHHHhccCCC-EEEEECHHHhccCCCCce--eHHHHhcCC---cceEEEEEECCCchHhhhCH--HHHhcCCCeEEECCC
Confidence 5555544443 999999999875421221 133344333 6888999999772 23443 222222248999999
Q ss_pred CHHHHHHHHHHHHH
Q 002045 834 STEDRSLFLGRLIE 847 (976)
Q Consensus 834 ~~~er~~i~~~~l~ 847 (976)
+.++..+||+..+.
T Consensus 198 ~~~~~~~il~~~~~ 211 (384)
T 2qby_B 198 DAEQLKFILSKYAE 211 (384)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998886
No 183
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.02 E-value=4.1e-10 Score=126.41 Aligned_cols=137 Identities=20% Similarity=0.238 Sum_probs=81.3
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcC------CCeeecCCc-ccc----------------cCCCCCChHHHH------H
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEK------FPVHSLGLP-ALL----------------SDPSAKTPEEAL------V 754 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~------~~~~~~~~~-~l~----------------~~~~~g~~e~~~------~ 754 (976)
.++||+||||||||++|+++++.+.. .++...... .+. .....|.++..+ .
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 125 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIE 125 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHH
T ss_pred ceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeechhh
Confidence 36999999999999999999998742 221110000 000 000012222221 1
Q ss_pred HHHHHH---------HhcCCceEeccccchhHHHHHHHHHHHHHHHHhh----CCC-------CCCEEEEEecCCCcccC
Q 002045 755 HIFGEA---------RRTTPSILYIPQFNLWWENAHEQLRAVLLTLLEE----LPS-------HLPILLLGSSSVPLAEV 814 (976)
Q Consensus 755 ~~f~~a---------~~~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~----~~~-------~~~v~vi~ttn~~~~~L 814 (976)
..|..+ ....++|||||||+.+....... |+.+|+. +.. ...++||+|||.....+
T Consensus 126 ~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~----Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l 201 (350)
T 1g8p_A 126 RAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDL----LLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDL 201 (350)
T ss_dssp HHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHH----HHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCC
T ss_pred hhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHH----HHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCC
Confidence 222222 11236899999999987655444 4445543 111 13789999999653356
Q ss_pred cCCCCCCcCCccEEEecCC-CHHHHHHHHHHHH
Q 002045 815 EGDPSTVFPLRSVYQVEKP-STEDRSLFLGRLI 846 (976)
Q Consensus 815 d~~~~~~~~~r~~i~v~~P-~~~er~~i~~~~l 846 (976)
++ +.+.++..++.|++| +.+++..|++.++
T Consensus 202 ~~--~L~~R~~~~~~l~~~~~~~~~~~il~~~~ 232 (350)
T 1g8p_A 202 RP--QLLDRFGLSVEVLSPRDVETRVEVIRRRD 232 (350)
T ss_dssp CH--HHHTTCSEEEECCCCCSHHHHHHHHHHHH
T ss_pred CH--HHHhhcceEEEcCCCCcHHHHHHHHHHHH
Confidence 66 444444466889888 6778889998754
No 184
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.01 E-value=5.6e-10 Score=106.31 Aligned_cols=60 Identities=12% Similarity=0.215 Sum_probs=53.9
Q ss_pred cccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 913 DKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 913 ~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
+..+.+|...++.. |+||. +.||+|.+|++||+.+.|.++++|..||.|||+||++||.+
T Consensus 28 R~lsd~F~~LPsk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~NAr~yN~e 87 (147)
T 3iu6_A 28 RCYSDSLAEIPAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERARRMNRT 87 (147)
T ss_dssp CBGGGGGTTCCSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCT
T ss_pred CcchHHHhHCCCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 34456788877766 78987 99999999999999999999999999999999999999985
No 185
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.95 E-value=9e-10 Score=122.91 Aligned_cols=131 Identities=14% Similarity=0.161 Sum_probs=82.9
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcc------cccCCCCCChHHHHHHHHHHHHhcC---CceEeccccc
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPA------LLSDPSAKTPEEALVHIFGEARRTT---PSILYIPQFN 774 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~------l~~~~~~g~~e~~~~~~f~~a~~~~---p~ilfiDEid 774 (976)
.++||+||||||||++|+++|+.+ +.+++.+.+.. +++....+... ..| ....+ .+|||||||+
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~-~~~~~~i~~~~~~~~~~l~g~~~~~~~~----~~~--~~~~g~l~~~vl~iDEi~ 119 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTM-DLDFHRIQFTPDLLPSDLIGTMIYNQHK----GNF--EVKKGPVFSNFILADEVN 119 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHT-TCCEEEEECCTTCCHHHHHEEEEEETTT----TEE--EEEECTTCSSEEEEETGG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh-CCCeEEEecCCCCChhhcCCceeecCCC----Cce--EeccCcccccEEEEEccc
Confidence 469999999999999999999998 67887776521 11110000000 000 00112 3799999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhC---------CCCCCEEEEEecCCCcc----cCcCCCCCCcCCccEEEecCCCHHHHHHH
Q 002045 775 LWWENAHEQLRAVLLTLLEEL---------PSHLPILLLGSSSVPLA----EVEGDPSTVFPLRSVYQVEKPSTEDRSLF 841 (976)
Q Consensus 775 ~l~~~~~~~~~~~l~~ll~~~---------~~~~~v~vi~ttn~~~~----~Ld~~~~~~~~~r~~i~v~~P~~~er~~i 841 (976)
.+...... .|+..|+.- ....+++||+|+|.... .|++ +.+.++..++.|+.|+.+++.+|
T Consensus 120 ~~~~~~~~----~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~--~l~~Rf~~~i~i~~p~~~~~~~i 193 (331)
T 2r44_A 120 RSPAKVQS----ALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPE--AQVDRFMMKIHLTYLDKESELEV 193 (331)
T ss_dssp GSCHHHHH----HHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCH--HHHTTSSEEEECCCCCHHHHHHH
T ss_pred cCCHHHHH----HHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCH--HHHhheeEEEEcCCCCHHHHHHH
Confidence 97665444 455555432 12346778888884310 1555 33334345688999999999999
Q ss_pred HHHHHH
Q 002045 842 LGRLIE 847 (976)
Q Consensus 842 ~~~~l~ 847 (976)
++..+.
T Consensus 194 l~~~~~ 199 (331)
T 2r44_A 194 MRRVSN 199 (331)
T ss_dssp HHHHHC
T ss_pred HHhccc
Confidence 997765
No 186
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.95 E-value=4.6e-10 Score=121.14 Aligned_cols=136 Identities=18% Similarity=0.180 Sum_probs=79.2
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcccccC--------CCCCChHHH---HHHHHHHHHhcCCceEec
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSD--------PSAKTPEEA---LVHIFGEARRTTPSILYI 770 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~~--------~~~g~~e~~---~~~~f~~a~~~~p~ilfi 770 (976)
..+||+||||||||++|++|++.+. +.+|+.++++.+... ...|..... ...+|.. ..+++|||
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~l 106 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFL 106 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC---------CCCCHHHH---TTTSEEEE
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcccccccccccccchhhh---cCCcEEEE
Confidence 4699999999999999999999864 257999987765211 000000000 0112332 24689999
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhCC---------CCCCEEEEEecCCCcccC-cC--CCCCCcCCc-cEEEecCCCHHH
Q 002045 771 PQFNLWWENAHEQLRAVLLTLLEELP---------SHLPILLLGSSSVPLAEV-EG--DPSTVFPLR-SVYQVEKPSTED 837 (976)
Q Consensus 771 DEid~l~~~~~~~~~~~l~~ll~~~~---------~~~~v~vi~ttn~~~~~L-d~--~~~~~~~~r-~~i~v~~P~~~e 837 (976)
|||+.+....+.. |+.+|+... ....+.||+|||.++..+ .. ....++. | .++.+.+|+..+
T Consensus 107 DEi~~l~~~~q~~----Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~-Rl~~~~i~lp~L~~ 181 (265)
T 2bjv_A 107 DELATAPMMVQEK----LLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD-ALAFDVVQLPPLRE 181 (265)
T ss_dssp ESGGGSCHHHHHH----HHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH-HHCSEEEECCCGGG
T ss_pred echHhcCHHHHHH----HHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH-hhcCcEEeCCChhh
Confidence 9999988765544 445554321 124678889999863332 11 0011111 2 245677888877
Q ss_pred HHHHHHHHHH
Q 002045 838 RSLFLGRLIE 847 (976)
Q Consensus 838 r~~i~~~~l~ 847 (976)
|.+.+..++.
T Consensus 182 R~~di~~l~~ 191 (265)
T 2bjv_A 182 RESDIMLMAE 191 (265)
T ss_dssp CHHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 6554444433
No 187
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.94 E-value=1.7e-10 Score=127.25 Aligned_cols=133 Identities=22% Similarity=0.226 Sum_probs=82.1
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCccccc--------CC----CCCChHHHHHHHHHHHHhcCCceEe
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLS--------DP----SAKTPEEALVHIFGEARRTTPSILY 769 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~--------~~----~~g~~e~~~~~~f~~a~~~~p~ilf 769 (976)
..+||+|+||||||++|++|++.+. +.+|+.++++.+.. ++ +.|... .....|..| .+++||
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~-~~~g~~~~a---~~g~L~ 101 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADK-RREGRFVEA---DGGTLF 101 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---C-CCCCHHHHH---TTSEEE
T ss_pred CcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhh-hhcCHHHhc---CCCEEE
Confidence 4699999999999999999999753 46899998765421 11 111111 112345444 357999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhhCC---------CCCCEEEEEecCCCcccCcCCCCCCcCC----c-cEEEecCCCH
Q 002045 770 IPQFNLWWENAHEQLRAVLLTLLEELP---------SHLPILLLGSSSVPLAEVEGDPSTVFPL----R-SVYQVEKPST 835 (976)
Q Consensus 770 iDEid~l~~~~~~~~~~~l~~ll~~~~---------~~~~v~vi~ttn~~~~~Ld~~~~~~~~~----r-~~i~v~~P~~ 835 (976)
||||+.+....+.. |+.+|+... ....+.||+|||.+...+-. ...|+. | .++.|.+|..
T Consensus 102 LDEi~~l~~~~q~~----Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~--~g~fr~~L~~Rl~~~~i~lPpL 175 (304)
T 1ojl_A 102 LDEIGDISPLMQVR----LLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVS--AGRFRQDLYYRLNVVAIEMPSL 175 (304)
T ss_dssp EESCTTCCHHHHHH----HHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHH--HTSSCHHHHHHHSSEEEECCCS
T ss_pred EeccccCCHHHHHH----HHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHH--hCCcHHHHHhhcCeeEEeccCH
Confidence 99999998755544 445555431 12468899999987333222 233331 2 3677888887
Q ss_pred HHHHHHHHHHH
Q 002045 836 EDRSLFLGRLI 846 (976)
Q Consensus 836 ~er~~i~~~~l 846 (976)
.+|.+.+..++
T Consensus 176 ~eR~edi~~l~ 186 (304)
T 1ojl_A 176 RQRREDIPLLA 186 (304)
T ss_dssp GGGGGGHHHHH
T ss_pred HHhHhhHHHHH
Confidence 77665333333
No 188
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.92 E-value=7.7e-10 Score=116.76 Aligned_cols=128 Identities=16% Similarity=0.124 Sum_probs=81.8
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHHH-
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENA- 780 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~- 780 (976)
.++||+||||||||++|+++++.+. +.+++.+++..+...+ . .++... ..+.||||||++.+....
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~--~~~~vliiDe~~~~~~~~~ 121 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASIS-T--------ALLEGL--EQFDLICIDDVDAVAGHPL 121 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSC-G--------GGGTTG--GGSSEEEEETGGGGTTCHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH-H--------HHHHhc--cCCCEEEEeccccccCCHH
Confidence 5799999999999999999999863 3677778777665432 1 111111 347899999999987543
Q ss_pred -HHHHHHHHHHHHhhCCCCCCE-EEEEecCCCcccCcCCC-CCCcCC--ccEEEecCCCHHHHHHHHHHHHH
Q 002045 781 -HEQLRAVLLTLLEELPSHLPI-LLLGSSSVPLAEVEGDP-STVFPL--RSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 781 -~~~~~~~l~~ll~~~~~~~~v-~vi~ttn~~~~~Ld~~~-~~~~~~--r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
...+. .+|+.......+ +|++++..+ ..+.... +.+.++ ..++.|++|+.+++.++++.++.
T Consensus 122 ~~~~l~----~~l~~~~~~~~~~ii~~~~~~~-~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~ 188 (242)
T 3bos_A 122 WEEAIF----DLYNRVAEQKRGSLIVSASASP-MEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAA 188 (242)
T ss_dssp HHHHHH----HHHHHHHHHCSCEEEEEESSCT-TTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHH
T ss_pred HHHHHH----HHHHHHHHcCCCeEEEEcCCCH-HHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHH
Confidence 34433 444333222333 555444433 4333211 122221 26889999999999999998886
No 189
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=98.88 E-value=1.3e-09 Score=109.13 Aligned_cols=69 Identities=25% Similarity=0.390 Sum_probs=57.5
Q ss_pred HhHhhhhhhhhccccccccccccccCCCCCCccchHHHhcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 002045 897 RRLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKVSTCA 976 (976)
Q Consensus 897 reLr~~L~~il~~l~~~~~~~~F~~PV~~~~~pdY~~~I~~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~li~~Na~~yn~~ 976 (976)
.+|...|..||..+..++..++|.... ++.||||.||++||+++.|.|+.+|+.||.|||+||.+||.+
T Consensus 74 ~el~~~l~~vl~~L~~~~~s~~~~~y~-----------~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~~~ 142 (183)
T 3lqh_A 74 KELQISLKQVLTALLNSRTTSHLLRYR-----------QQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGG 142 (183)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHTCC-----------C--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHhccccHhhhhhh-----------hcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCC
Confidence 344555667778888888899987742 499999999999999999999999999999999999999974
No 190
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.87 E-value=5.6e-09 Score=115.51 Aligned_cols=126 Identities=14% Similarity=0.071 Sum_probs=86.7
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc----CCCeeecCCcccccCCCCCChHHHHHHHHHHHH-------hcCCceEecccc
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE----KFPVHSLGLPALLSDPSAKTPEEALVHIFGEAR-------RTTPSILYIPQF 773 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~----~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~-------~~~p~ilfiDEi 773 (976)
++||+||||||||++|+++++.+. ..+++.++.+... ....++.++..+. ...+.||||||+
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~ 116 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR-------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEA 116 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC-------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc-------ChHHHHHHHHHHHhccccCCCCCceEEEEECc
Confidence 599999999999999999999852 2346666654321 1345566665544 233789999999
Q ss_pred chhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 774 NLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 774 d~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
|.+.... .+.|..+|+..+ ..+.||.+||.+ ..+.+ +.+.+ -.++.|++|+.++..++++..+.
T Consensus 117 ~~l~~~~----~~~L~~~le~~~--~~~~~il~~~~~-~~l~~--~l~sr-~~~i~~~~~~~~~~~~~l~~~~~ 180 (323)
T 1sxj_B 117 DSMTAGA----QQALRRTMELYS--NSTRFAFACNQS-NKIIE--PLQSQ-CAILRYSKLSDEDVLKRLLQIIK 180 (323)
T ss_dssp GGSCHHH----HHTTHHHHHHTT--TTEEEEEEESCG-GGSCH--HHHTT-SEEEECCCCCHHHHHHHHHHHHH
T ss_pred ccCCHHH----HHHHHHHHhccC--CCceEEEEeCCh-hhchh--HHHhh-ceEEeecCCCHHHHHHHHHHHHH
Confidence 9987543 334556666543 355666677776 45554 22222 24888999999999999998876
No 191
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.85 E-value=2.5e-09 Score=118.08 Aligned_cols=130 Identities=15% Similarity=0.113 Sum_probs=83.4
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcC----CCeeecCCcccccCCCCCChHHHHHHHHHHH--HhcCCceEeccccchhHH
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEK----FPVHSLGLPALLSDPSAKTPEEALVHIFGEA--RRTTPSILYIPQFNLWWE 778 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~----~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a--~~~~p~ilfiDEid~l~~ 778 (976)
++||+||||||||++|+++++.+.+ .+++.++++...+ .......+..+.... ....+.||||||+|.+..
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~ 116 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG---IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA 116 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC---TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC---hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH
Confidence 5999999999999999999998522 3466777654332 112122222222110 014478999999999865
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 779 NAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 779 ~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
... +.|..+|+.. ...++||++||.+ ..+.+ +.+.++ .++.|.+|+.+++..+++.++.
T Consensus 117 ~~~----~~L~~~le~~--~~~~~~i~~~~~~-~~l~~--~l~sr~-~~i~~~~~~~~~~~~~l~~~~~ 175 (319)
T 2chq_A 117 DAQ----AALRRTMEMY--SKSCRFILSCNYV-SRIIE--PIQSRC-AVFRFKPVPKEAMKKRLLEICE 175 (319)
T ss_dssp HHH----HTTGGGTSSS--SSSEEEEEEESCG-GGSCH--HHHTTC-EEEECCCCCHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHhc--CCCCeEEEEeCCh-hhcch--HHHhhC-eEEEecCCCHHHHHHHHHHHHH
Confidence 432 3344444332 3467777788877 45554 222222 4888999999999999988876
No 192
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.84 E-value=1e-08 Score=115.06 Aligned_cols=127 Identities=15% Similarity=0.099 Sum_probs=83.3
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc-----CCCeeecCCcccccCCCCCChHHHHHHHHHHHHh----------------
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE-----KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARR---------------- 762 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~-----~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~---------------- 762 (976)
+++||+||||||||++|+++++.+. ...++.++++.... ...++..+.....
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERG-------ISIVREKVKNFARLTVSKPSKHDLENYPC 131 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCC-------HHHHTTHHHHHHHSCCCCCCTTHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccc-------hHHHHHHHHHHhhhcccccchhhcccCCC
Confidence 3599999999999999999999863 23566666554321 1223332222111
Q ss_pred cCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHH
Q 002045 763 TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFL 842 (976)
Q Consensus 763 ~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~ 842 (976)
..+.||||||++.+..... +.|+.+|+.... .+.+|.+||.+ ..+.+ +.+.+. .++.|.+|+.++...++
T Consensus 132 ~~~~vliiDE~~~l~~~~~----~~Ll~~le~~~~--~~~~il~~~~~-~~l~~--~l~sR~-~~i~~~~~~~~~~~~~l 201 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADAQ----SALRRTMETYSG--VTRFCLICNYV-TRIID--PLASQC-SKFRFKALDASNAIDRL 201 (353)
T ss_dssp CSCEEEEETTGGGSCHHHH----HHHHHHHHHTTT--TEEEEEEESCG-GGSCH--HHHHHS-EEEECCCCCHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHH----HHHHHHHHhcCC--CceEEEEeCch-hhCcc--hhhccC-ceEEeCCCCHHHHHHHH
Confidence 2346999999999876544 445566665543 34455567777 45555 333332 47889999999999999
Q ss_pred HHHHH
Q 002045 843 GRLIE 847 (976)
Q Consensus 843 ~~~l~ 847 (976)
+..+.
T Consensus 202 ~~~~~ 206 (353)
T 1sxj_D 202 RFISE 206 (353)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88776
No 193
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.84 E-value=6.5e-09 Score=109.17 Aligned_cols=133 Identities=15% Similarity=0.215 Sum_probs=83.7
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCC-eeecC--------------Cccccc-CCCCCChHHHHHHHHHHHH----hcC
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFP-VHSLG--------------LPALLS-DPSAKTPEEALVHIFGEAR----RTT 764 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~-~~~~~--------------~~~l~~-~~~~g~~e~~~~~~f~~a~----~~~ 764 (976)
.+||+||||||||++|+++++.+.... +.... ...++. ..........+..++..+. ...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 126 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCC
Confidence 589999999999999999999863211 10000 001110 0001122344556665543 234
Q ss_pred CceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHH
Q 002045 765 PSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGR 844 (976)
Q Consensus 765 p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~ 844 (976)
|.||||||++.+... ..+.|+.+|+.. ...++||++||.+ ..+++ ..+.+ ..++.|++|+.++..++++.
T Consensus 127 ~~vlviDe~~~l~~~----~~~~l~~~l~~~--~~~~~~i~~t~~~-~~~~~--~l~~r-~~~i~l~~l~~~e~~~~l~~ 196 (250)
T 1njg_A 127 FKVYLIDEVHMLSRH----SFNALLKTLEEP--PEHVKFLLATTDP-QKLPV--TILSR-CLQFHLKALDVEQIRHQLEH 196 (250)
T ss_dssp SEEEEEETGGGSCHH----HHHHHHHHHHSC--CTTEEEEEEESCG-GGSCH--HHHTT-SEEEECCCCCHHHHHHHHHH
T ss_pred ceEEEEECcccccHH----HHHHHHHHHhcC--CCceEEEEEeCCh-HhCCH--HHHHH-hhhccCCCCCHHHHHHHHHH
Confidence 789999999997543 334455666543 3467777888877 45554 22222 26788999999999999998
Q ss_pred HHH
Q 002045 845 LIE 847 (976)
Q Consensus 845 ~l~ 847 (976)
++.
T Consensus 197 ~~~ 199 (250)
T 1njg_A 197 ILN 199 (250)
T ss_dssp HHH
T ss_pred HHH
Confidence 886
No 194
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.83 E-value=9e-09 Score=104.06 Aligned_cols=101 Identities=17% Similarity=0.251 Sum_probs=61.2
Q ss_pred CCCcccccC----hHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHh-hcCCcEEEEEe
Q 002045 375 SVSFDDIGG----LSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAAS-KAGQKVSFYMR 449 (976)
Q Consensus 375 ~~~~~~i~G----~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~-~~~~~~~~~~~ 449 (976)
..+|+++++ +..+++.+++++.. +....+.+++|+||||||||+++++++..+. ..+..+.+ +
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~--~ 73 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVHN----------FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF--F 73 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHHS----------CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE--E
T ss_pred hCccccccCCCHHHHHHHHHHHHHHHh----------ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE--E
Confidence 457888765 34444445444432 3344567999999999999999999999986 44544333 4
Q ss_pred cchhHHhhhHhHHHHH-HHHHHHHHHhcCCcEEEEcccccc
Q 002045 450 KGADVLSKWVGEAERQ-LKLLFEEAQRNQPSIIFFDEIDGL 489 (976)
Q Consensus 450 ~~~~l~~~~~g~~~~~-l~~~f~~a~~~~p~VL~iDEid~L 489 (976)
+..+++..+....... ...++.. ...|.+|||||++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 74 DTKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSE 112 (180)
T ss_dssp EHHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSS
T ss_pred EHHHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCC
Confidence 5555554332221110 0112222 235779999999754
No 195
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.82 E-value=1.1e-07 Score=106.18 Aligned_cols=192 Identities=17% Similarity=0.093 Sum_probs=116.8
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~ 453 (976)
+......++|.+..++.|.+++.. + ..++|+||+|+|||++++.+++.++ + +.+++..
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~--~~~~~~~ 64 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP-----G--ILIDCRE 64 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS-----E--EEEEHHH
T ss_pred CCCChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC-----c--EEEEeec
Confidence 344556799999999999887642 1 5899999999999999999998752 3 3333322
Q ss_pred H------------HhhhH---h-------------------------HHHHHHHHHHHHHHhcCCcEEEEccccccCCCC
Q 002045 454 V------------LSKWV---G-------------------------EAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVR 493 (976)
Q Consensus 454 l------------~~~~~---g-------------------------~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r 493 (976)
. +.... + .....+..+...+....|.||||||++.+....
T Consensus 65 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~ 144 (350)
T 2qen_A 65 LYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG 144 (350)
T ss_dssp HHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT
T ss_pred ccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC
Confidence 1 11100 0 011112222222222348899999999885310
Q ss_pred CChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCccccc---------hhhcCCCCCccccCCCCCCHHHHHHHHHHH
Q 002045 494 SSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAID---------GALRRPGRFDREFNFPLPGCEARAEILDIH 564 (976)
Q Consensus 494 ~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~~ld---------~aL~r~gRf~~~i~~~~P~~~er~~Il~~~ 564 (976)
. .....++..|...++.. .++.+|.++.....+. ..+. ||+...+.+++.+.++..+++...
T Consensus 145 ~----~~~~~~~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~ 215 (350)
T 2qen_A 145 S----RGGKELLALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRG 215 (350)
T ss_dssp T----TTTHHHHHHHHHHHHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHH
T ss_pred c----cchhhHHHHHHHHHHhc---CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHH
Confidence 0 00123344444444432 2455555554322111 1122 356668999999999999999988
Q ss_pred HhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHH
Q 002045 565 TRKWKQPPSRELKSELAASCVGYCGADLKALCT 597 (976)
Q Consensus 565 l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~ 597 (976)
+...+...+...+..+...+.|+. .-+..++.
T Consensus 216 ~~~~~~~~~~~~~~~i~~~tgG~P-~~l~~~~~ 247 (350)
T 2qen_A 216 FREVNLDVPENEIEEAVELLDGIP-GWLVVFGV 247 (350)
T ss_dssp HHTTTCCCCHHHHHHHHHHHTTCH-HHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHhCCCH-HHHHHHHH
Confidence 776666677888888999998864 44555543
No 196
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.80 E-value=1.2e-08 Score=113.84 Aligned_cols=127 Identities=18% Similarity=0.313 Sum_probs=84.5
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHEQ 783 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~~~~ 783 (976)
.+++|+|||||||||||++||..+ +.++...+.+.+. ....+..++... ..++|+||||++.+.....+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l-~~~~~~~sg~~~~-------~~~~l~~~~~~~--~~~~v~~iDE~~~l~~~~~e~ 121 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL-QTNIHVTSGPVLV-------KQGDMAAILTSL--ERGDVLFIDEIHRLNKAVEEL 121 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH-TCCEEEEETTTCC-------SHHHHHHHHHHC--CTTCEEEEETGGGCCHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh-CCCEEEEechHhc-------CHHHHHHHHHHc--cCCCEEEEcchhhcCHHHHHH
Confidence 469999999999999999999998 5666555433222 122344444322 246899999999987643333
Q ss_pred HHHHHHHHHhhCC-------C---------CCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 784 LRAVLLTLLEELP-------S---------HLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 784 ~~~~l~~ll~~~~-------~---------~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
|...+.... . -..+.++++|+.+ ..|++.+..++ ..++.+++|+.+++.+|++.+..
T Consensus 122 ----L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~-~~Ls~~l~sR~--~l~~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 122 ----LYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRS-GLLSSPLRSRF--GIILELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp ----HHHHHHTSCCCC---------------CCCEEEEEESCG-GGSCHHHHTTC--SEEEECCCCCHHHHHHHHHHHHH
T ss_pred ----HHHHHHhcccceeeccCcccccccccCCCeEEEEecCCc-ccCCHHHHHhc--CceeeCCCCCHHHHHHHHHHHHH
Confidence 333332211 0 1245677788887 67776333333 36788999999999999998776
No 197
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.80 E-value=7.6e-08 Score=131.35 Aligned_cols=165 Identities=17% Similarity=0.182 Sum_probs=96.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCCCC
Q 002045 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVR 493 (976)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r 493 (976)
.+..+.||+|||||.+++.+|+.++ ..++.++|.+-+.. ..+..+|..+... .+..+||||+.+-..
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lg-----r~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl~~~- 671 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLG-----RFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRLEER- 671 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTT-----CCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSSCHH-
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhC-----CeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcCCHH-
Confidence 4678999999999999999999997 45667777654321 1234455554443 358999999987310
Q ss_pred CChhhhhHHHHHHHHHHHhh----------c--cCCCCcEEEEecCCC----ccccchhhcCCCCCccccCCCCCCHHHH
Q 002045 494 SSKQEQIHNSIVSTLLALMD----------G--LDSRGQVVLIGATNR----VDAIDGALRRPGRFDREFNFPLPGCEAR 557 (976)
Q Consensus 494 ~~~~~~~~~~~~~~Ll~~ld----------~--~~~~~~vivI~atn~----~~~ld~aL~r~gRf~~~i~~~~P~~~er 557 (976)
.-......+..+...+. + +.-...+.|++|.|+ ...|+.+|.. || +.|.+..|+.+..
T Consensus 672 ---vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~i 745 (3245)
T 3vkg_A 672 ---ILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREMI 745 (3245)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHHH
Confidence 00000111111111111 1 111235677888885 3468999998 77 5699999999887
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHH-------Hc-----cCCCHHHHHHHHHHHH
Q 002045 558 AEILDIHTRKWKQPPSRELKSELAA-------SC-----VGYCGADLKALCTEAA 600 (976)
Q Consensus 558 ~~Il~~~l~~~~~~~~~~~l~~lA~-------~t-----~G~s~~dI~~l~~~A~ 600 (976)
.+|+- -..++.....+...+.. +. ..|.-+.|+.++..|.
T Consensus 746 ~ei~L---~s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG 797 (3245)
T 3vkg_A 746 AQVML---YSQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAG 797 (3245)
T ss_dssp HHHHH---HTTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHH
T ss_pred HHHHH---HHcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHH
Confidence 77753 23333322222111111 11 2356678888877665
No 198
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.80 E-value=1.3e-09 Score=127.38 Aligned_cols=135 Identities=10% Similarity=0.029 Sum_probs=73.2
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcC-CCeeecCC-----cccccCCCCCChHHHHHHHHHHHHhc---CCceEeccccc
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEK-FPVHSLGL-----PALLSDPSAKTPEEALVHIFGEARRT---TPSILYIPQFN 774 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~-~~~~~~~~-----~~l~~~~~~g~~e~~~~~~f~~a~~~---~p~ilfiDEid 774 (976)
.++||+||||||||++|++||+.+.. .+|..+.+ +++++.+ .+..... ...|..+... .++|||||||+
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~-~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~ 119 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL-SIQALKD-EGRYERLTSGYLPEAEIVFLDEIW 119 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCB-C-----------CBCCTTSGGGCSEEEEESGG
T ss_pred CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcc-cHHHHhh-chhHHhhhccCCCcceeeeHHhHh
Confidence 47999999999999999999998732 12333322 3344322 2221111 1223222222 47899999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhC----CC----CCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCH-HHHHHHHHH
Q 002045 775 LWWENAHEQLRAVLLTLLEEL----PS----HLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPST-EDRSLFLGR 844 (976)
Q Consensus 775 ~l~~~~~~~~~~~l~~ll~~~----~~----~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~-~er~~i~~~ 844 (976)
.+.+.. .+.|+..|+.- .+ ....++|+|||..+......-+.+.++...+.++.|+. +++..|++.
T Consensus 120 r~~~~~----q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~ 194 (500)
T 3nbx_X 120 KAGPAI----LNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTS 194 (500)
T ss_dssp GCCHHH----HHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTC
T ss_pred hhcHHH----HHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhc
Confidence 866544 44566666431 11 11224566777542311000022333336677899987 778888864
No 199
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.80 E-value=9e-09 Score=114.02 Aligned_cols=127 Identities=17% Similarity=0.208 Sum_probs=82.0
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcC----CCeeecCCcccccCCCCCChHHHHHHHHHH-HH-----hcCCceEecccc
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEK----FPVHSLGLPALLSDPSAKTPEEALVHIFGE-AR-----RTTPSILYIPQF 773 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~----~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~-a~-----~~~p~ilfiDEi 773 (976)
+++||+||||||||++|+++++.+.+ ..++.+++++..+ ...++..+.. +. ...+.||||||+
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~ 119 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG-------INVIREKVKEFARTKPIGGASFKIIFLDEA 119 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHH-------HHTTHHHHHHHHHSCCGGGCSCEEEEEETG
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCc-------hHHHHHHHHHHHhhCCcCCCCCeEEEEeCC
Confidence 35999999999999999999998632 2355555433211 1112222222 11 134789999999
Q ss_pred chhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 774 NLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 774 d~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
|.+..... +.|+.+|+... ..+.||++||.+ ..+.+ +.+.++ .++.|++|+.++...+++..+.
T Consensus 120 ~~l~~~~~----~~L~~~le~~~--~~~~~i~~~~~~-~~l~~--~l~sr~-~~~~~~~l~~~~~~~~l~~~~~ 183 (327)
T 1iqp_A 120 DALTQDAQ----QALRRTMEMFS--SNVRFILSCNYS-SKIIE--PIQSRC-AIFRFRPLRDEDIAKRLRYIAE 183 (327)
T ss_dssp GGSCHHHH----HHHHHHHHHTT--TTEEEEEEESCG-GGSCH--HHHHTE-EEEECCCCCHHHHHHHHHHHHH
T ss_pred CcCCHHHH----HHHHHHHHhcC--CCCeEEEEeCCc-cccCH--HHHhhC-cEEEecCCCHHHHHHHHHHHHH
Confidence 99865443 44556666543 356667778877 44554 222221 4788999999999999987775
No 200
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.79 E-value=8.6e-09 Score=117.14 Aligned_cols=139 Identities=12% Similarity=0.024 Sum_probs=87.4
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc---CCCeeecCCcccccC------------C---CCC-ChHHHHHHHHHHHHh-cC
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE---KFPVHSLGLPALLSD------------P---SAK-TPEEALVHIFGEARR-TT 764 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~---~~~~~~~~~~~l~~~------------~---~~g-~~e~~~~~~f~~a~~-~~ 764 (976)
.++|+||||||||+++++++..+. +.+++.+++....+. . ..| ........+...... ..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 125 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDL 125 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCC
Confidence 699999999999999999999874 346777775433210 0 012 222333333333333 44
Q ss_pred CceEeccccchhHHHHHHHHHHHHHHHHhhCCC--CCCEEEEEecCCCc--ccCcCCCCCCcCCccEEEecCCCHHHHHH
Q 002045 765 PSILYIPQFNLWWENAHEQLRAVLLTLLEELPS--HLPILLLGSSSVPL--AEVEGDPSTVFPLRSVYQVEKPSTEDRSL 840 (976)
Q Consensus 765 p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~--~~~v~vi~ttn~~~--~~Ld~~~~~~~~~r~~i~v~~P~~~er~~ 840 (976)
|.||||||++.+. ......|..+++.+.. ..++.||++||.+. ..+.+.+..++. ..++.|++++.++..+
T Consensus 126 ~~vlilDE~~~l~----~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~-~~~i~~~pl~~~~~~~ 200 (389)
T 1fnn_A 126 YMFLVLDDAFNLA----PDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMG-KYVIRFSPYTKDQIFD 200 (389)
T ss_dssp CEEEEEETGGGSC----HHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHT-TCEEECCCCBHHHHHH
T ss_pred eEEEEEECccccc----hHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCC-CceEEeCCCCHHHHHH
Confidence 8899999999982 3444455555544332 25788888888771 112221111222 1378899999999999
Q ss_pred HHHHHHHH
Q 002045 841 FLGRLIEA 848 (976)
Q Consensus 841 i~~~~l~~ 848 (976)
|++..+..
T Consensus 201 ~l~~~~~~ 208 (389)
T 1fnn_A 201 ILLDRAKA 208 (389)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988863
No 201
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.68 E-value=1.2e-07 Score=106.33 Aligned_cols=128 Identities=17% Similarity=0.158 Sum_probs=79.0
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCC----------------------------eeecCCcccccCCCCCChHHHHHHH
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFP----------------------------VHSLGLPALLSDPSAKTPEEALVHI 756 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~----------------------------~~~~~~~~l~~~~~~g~~e~~~~~~ 756 (976)
++||+||+|||||+++++++..+.+.. ++.++... . .......++.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~ 112 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD----M-GNNDRIVIQEL 112 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC---------CCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhh----c-CCcchHHHHHH
Confidence 499999999999999999999642211 11121111 0 01111134555
Q ss_pred HHHHH--------------hcCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCc
Q 002045 757 FGEAR--------------RTTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVF 822 (976)
Q Consensus 757 f~~a~--------------~~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~ 822 (976)
+..+. ...|.||+|||++.+..... +.|...|..... .+.||.+|+.+ ..+.+ ..+.
T Consensus 113 i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~----~~L~~~le~~~~--~~~~Il~t~~~-~~l~~--~l~s 183 (354)
T 1sxj_E 113 LKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQ----AALRRTMEKYSK--NIRLIMVCDSM-SPIIA--PIKS 183 (354)
T ss_dssp HHHHTTTTC------------CCEEEEEECTTSSCHHHH----HHHHHHHHHSTT--TEEEEEEESCS-CSSCH--HHHT
T ss_pred HHHHHHhccccccccccccCCCCeEEEEeCccccCHHHH----HHHHHHHHhhcC--CCEEEEEeCCH-HHHHH--HHHh
Confidence 44432 22567999999999655443 345566665543 45566667776 34444 2222
Q ss_pred CCccEEEecCCCHHHHHHHHHHHHH
Q 002045 823 PLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 823 ~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
+ -.++.|++|+.+++.++++.++.
T Consensus 184 R-~~~~~~~~~~~~~~~~~l~~~~~ 207 (354)
T 1sxj_E 184 Q-CLLIRCPAPSDSEISTILSDVVT 207 (354)
T ss_dssp T-SEEEECCCCCHHHHHHHHHHHHH
T ss_pred h-ceEEecCCcCHHHHHHHHHHHHH
Confidence 2 26888999999999999998876
No 202
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.68 E-value=7.6e-08 Score=107.45 Aligned_cols=128 Identities=16% Similarity=0.117 Sum_probs=83.5
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCC-----------------------eeecCCcccccCCCCCChHHHHHHHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFP-----------------------VHSLGLPALLSDPSAKTPEEALVHIFGEA 760 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~-----------------------~~~~~~~~l~~~~~~g~~e~~~~~~f~~a 760 (976)
..+||+||||||||++|+++|+.+.... ++.++...- ...-.-..++.+++.+
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~----~~~~~i~~ir~l~~~~ 100 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG----KNTLGVDAVREVTEKL 100 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT----CSSBCHHHHHHHHHHT
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc----CCCCCHHHHHHHHHHH
Confidence 4599999999999999999999874321 222221100 0112234677777776
Q ss_pred Hh----cCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHH
Q 002045 761 RR----TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTE 836 (976)
Q Consensus 761 ~~----~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~ 836 (976)
.. ....|++|||+|.+.... .+.|+..|+.- ...+++|.+||.+ ..|.+ ..+.+ -.++.|++|+.+
T Consensus 101 ~~~~~~~~~kvviIdead~l~~~a----~naLLk~lEep--~~~~~~Il~t~~~-~~l~~--ti~SR-c~~~~~~~~~~~ 170 (334)
T 1a5t_A 101 NEHARLGGAKVVWVTDAALLTDAA----ANALLKTLEEP--PAETWFFLATREP-ERLLA--TLRSR-CRLHYLAPPPEQ 170 (334)
T ss_dssp TSCCTTSSCEEEEESCGGGBCHHH----HHHHHHHHTSC--CTTEEEEEEESCG-GGSCH--HHHTT-SEEEECCCCCHH
T ss_pred hhccccCCcEEEEECchhhcCHHH----HHHHHHHhcCC--CCCeEEEEEeCCh-HhCcH--HHhhc-ceeeeCCCCCHH
Confidence 53 235799999999987543 34456666543 3356666677777 55555 22222 257889999999
Q ss_pred HHHHHHHHH
Q 002045 837 DRSLFLGRL 845 (976)
Q Consensus 837 er~~i~~~~ 845 (976)
+...+++..
T Consensus 171 ~~~~~L~~~ 179 (334)
T 1a5t_A 171 YAVTWLSRE 179 (334)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999888755
No 203
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.67 E-value=4.7e-08 Score=107.39 Aligned_cols=125 Identities=13% Similarity=0.070 Sum_probs=84.7
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc-----CCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcC----CceEeccccc
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE-----KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTT----PSILYIPQFN 774 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~-----~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~----p~ilfiDEid 774 (976)
+.+||+||||||||++|+++|+.+. ...++.++...- ...-..++.++..+...+ ..|+||||+|
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~------~~~id~ir~li~~~~~~p~~~~~kvviIdead 92 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE------NIGIDDIRTIKDFLNYSPELYTRKYVIVHDCE 92 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS------CBCHHHHHHHHHHHTSCCSSSSSEEEEETTGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC------CCCHHHHHHHHHHHhhccccCCceEEEeccHH
Confidence 4799999999999999999998641 335666654310 122346788888876432 3699999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHH
Q 002045 775 LWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLI 846 (976)
Q Consensus 775 ~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l 846 (976)
.+.... .+.|+..|+..+ . .+++|.+|+.+ ..|.+ .+++ | ++.|.+|+.++...+++..+
T Consensus 93 ~lt~~a----~naLLk~LEep~-~-~t~fIl~t~~~-~kl~~---tI~S-R-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 93 RMTQQA----ANAFLKALEEPP-E-YAVIVLNTRRW-HYLLP---TIKS-R-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp GBCHHH----HHHTHHHHHSCC-T-TEEEEEEESCG-GGSCH---HHHT-T-SEEEECCCCHHHHHHHHHHH
T ss_pred HhCHHH----HHHHHHHHhCCC-C-CeEEEEEECCh-HhChH---HHHc-e-eEeCCCCCHHHHHHHHHHHh
Confidence 986544 345667776533 3 44444455656 44444 2333 3 88899999999999888765
No 204
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.65 E-value=5.7e-08 Score=109.80 Aligned_cols=127 Identities=14% Similarity=0.207 Sum_probs=83.0
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCC-----------------------eeecCCcccccCCCCCChHHHHHHHHHHHH
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFP-----------------------VHSLGLPALLSDPSAKTPEEALVHIFGEAR 761 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~-----------------------~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~ 761 (976)
.+||+||+|||||++|+++++.+.... ++.++... ......++.++..+.
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~ 112 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS-------RTKVEDTRDLLDNVQ 112 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTC-------SCCSSCHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccc-------cCCHHHHHHHHHHHh
Confidence 589999999999999999999874311 11111110 011224566666654
Q ss_pred h----cCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHH
Q 002045 762 R----TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTED 837 (976)
Q Consensus 762 ~----~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~e 837 (976)
. ..+.||||||+|.+.... .+.|+.+|+..+ ..+++|++|+.+ ..+.+ ..+.+ -.++.|.+|+.++
T Consensus 113 ~~~~~~~~~vliiDe~~~l~~~~----~~~Ll~~le~~~--~~~~~Il~~~~~-~~l~~--~l~sr-~~~i~~~~l~~~~ 182 (373)
T 1jr3_A 113 YAPARGRFKVYLIDEVHMLSRHS----FNALLKTLEEPP--EHVKFLLATTDP-QKLPV--TILSR-CLQFHLKALDVEQ 182 (373)
T ss_dssp SCCSSSSSEEEEEECGGGSCHHH----HHHHHHHHHSCC--SSEEEEEEESCG-GGSCH--HHHTT-SEEEECCCCCHHH
T ss_pred hccccCCeEEEEEECcchhcHHH----HHHHHHHHhcCC--CceEEEEEeCCh-HhCcH--HHHhh-eeEeeCCCCCHHH
Confidence 2 346899999999986533 345666666543 366667777766 44444 22222 2688899999999
Q ss_pred HHHHHHHHHHH
Q 002045 838 RSLFLGRLIEA 848 (976)
Q Consensus 838 r~~i~~~~l~~ 848 (976)
...+++..+..
T Consensus 183 ~~~~l~~~~~~ 193 (373)
T 1jr3_A 183 IRHQLEHILNE 193 (373)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988763
No 205
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.64 E-value=4.9e-08 Score=110.85 Aligned_cols=214 Identities=15% Similarity=0.044 Sum_probs=125.1
Q ss_pred ccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHH-HHHHhhcCCcEEEEEecchh---HHh
Q 002045 381 IGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARAL-ACAASKAGQKVSFYMRKGAD---VLS 456 (976)
Q Consensus 381 i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laral-A~~l~~~~~~~~~~~~~~~~---l~~ 456 (976)
|.|++.+|..|.-.+.-.. .. ++...||||.|+||| ||++|+++ ++.+. ...|....++. +..
T Consensus 215 I~G~e~vK~aLll~L~GG~--~k------~rgdihVLL~G~PGt-KS~Lar~i~~~i~p----R~~ft~g~~ss~~gLt~ 281 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCV--GK------NSERLHVLLAGYPVV-CSEILHHVLDHLAP----RGVYVDLRRTELTDLTA 281 (506)
T ss_dssp STTCHHHHHHHHHHHTTCC--SS------GGGCCCEEEESCHHH-HHHHHHHHHHHTCS----SEEEEEGGGCCHHHHSE
T ss_pred cCCCHHHHHHHHHHHcCCc--cc------cCCceeEEEECCCCh-HHHHHHHHHHHhCC----CeEEecCCCCCccCceE
Confidence 8899988877755543210 00 122348999999999 99999999 66542 23343332221 111
Q ss_pred hhHhHH-HHHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC-------CCCcEEEEecCC
Q 002045 457 KWVGEA-ERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-------SRGQVVLIGATN 528 (976)
Q Consensus 457 ~~~g~~-~~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~-------~~~~vivI~atn 528 (976)
...+.+ ...-...+..|.. .|+|||||+.+ ....+..|+..|+.-. -...+.||+|+|
T Consensus 282 s~r~~tG~~~~~G~l~LAdg---Gvl~lDEIn~~-----------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~N 347 (506)
T 3f8t_A 282 VLKEDRGWALRAGAAVLADG---GILAVDHLEGA-----------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAIN 347 (506)
T ss_dssp EEEESSSEEEEECHHHHTTT---SEEEEECCTTC-----------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEEC
T ss_pred EEEcCCCcccCCCeeEEcCC---CeeehHhhhhC-----------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeC
Confidence 100000 0000011222323 39999999887 4567788888887321 124688999999
Q ss_pred Ccc-----------ccchhhcCCCCCcccc-CCCCCCHH-------------HHHHHHHHHHh--cCCCCCCHHHHHHHH
Q 002045 529 RVD-----------AIDGALRRPGRFDREF-NFPLPGCE-------------ARAEILDIHTR--KWKQPPSRELKSELA 581 (976)
Q Consensus 529 ~~~-----------~ld~aL~r~gRf~~~i-~~~~P~~~-------------er~~Il~~~l~--~~~~~~~~~~l~~lA 581 (976)
+.. .|++++++ ||+..+ .++.|+.+ ...+++. +++ .....+++++.+.|.
T Consensus 348 P~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~-~ar~~~~~p~ls~ea~~yI~ 424 (506)
T 3f8t_A 348 PGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLL-YAIREHPAPELTEEARKRLE 424 (506)
T ss_dssp CCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHH-HHHHHCSCCEECHHHHHHHH
T ss_pred cccccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHH-HHHhcCCCceeCHHHHHHHH
Confidence 865 68889999 996643 44555432 2333332 233 334455655443332
Q ss_pred H-----------------HccCCCHHHHHHHHHHHHHHHHHhhCCccccCcccccccccceeEeehhhhhcccccc
Q 002045 582 A-----------------SCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (976)
Q Consensus 582 ~-----------------~t~G~s~~dI~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~i~ 640 (976)
. ...|.|++.+..|++-|...|..+... .++.+|+..|+.-+.
T Consensus 425 ~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~----------------~V~~eDV~~Ai~L~~ 484 (506)
T 3f8t_A 425 HWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSD----------------DVEPEDVDIAAELVD 484 (506)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCS----------------EECHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcC----------------CCCHHHHHHHHHHHH
Confidence 1 134788999999999888888776543 377788887766544
No 206
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.62 E-value=6.6e-08 Score=110.13 Aligned_cols=194 Identities=20% Similarity=0.238 Sum_probs=115.4
Q ss_pred ccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhh
Q 002045 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKW 458 (976)
Q Consensus 379 ~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~ 458 (976)
..++|.......+.+.+.. + .....+|||+|++|||||++|+++....... ..+|+.++|+.+....
T Consensus 137 ~~~ig~s~~m~~l~~~i~~----------~-a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~--~~~fv~v~~~~~~~~~ 203 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKK----------I-SCAECPVLITGESGVGKEVVARLIHKLSDRS--KEPFVALNVASIPRDI 203 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHH----------H-TTCCSCEEEECSTTSSHHHHHHHHHHHSTTT--TSCEEEEETTTSCHHH
T ss_pred hhhhhccHHhhHHHHHHHH----------h-cCCCCCeEEecCCCcCHHHHHHHHHHhcCCC--CCCeEEEecCCCCHHH
Confidence 4567766666666665543 1 1345679999999999999999999876433 3578899987654321
Q ss_pred -----HhHHH-------HHHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC-----C----
Q 002045 459 -----VGEAE-------RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-----S---- 517 (976)
Q Consensus 459 -----~g~~~-------~~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~-----~---- 517 (976)
+|... .....+|..|.. .+||||||+.|. ..++..|+..|+.-. .
T Consensus 204 ~~~elfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l~-----------~~~q~~Ll~~l~~~~~~~~g~~~~~ 269 (387)
T 1ny5_A 204 FEAELFGYEKGAFTGAVSSKEGFFELADG---GTLFLDEIGELS-----------LEAQAKLLRVIESGKFYRLGGRKEI 269 (387)
T ss_dssp HHHHHHCBCTTSSTTCCSCBCCHHHHTTT---SEEEEESGGGCC-----------HHHHHHHHHHHHHSEECCBTCCSBE
T ss_pred HHHHhcCCCCCCCCCcccccCCceeeCCC---cEEEEcChhhCC-----------HHHHHHHHHHHhcCcEEeCCCCcee
Confidence 11100 001223444443 499999999883 456777888776311 1
Q ss_pred CCcEEEEecCCCccccchhhcCCCCCcc-------ccCCCCCCH----HHHHHHHHHHHhc----CC---CCCCHHHHHH
Q 002045 518 RGQVVLIGATNRVDAIDGALRRPGRFDR-------EFNFPLPGC----EARAEILDIHTRK----WK---QPPSRELKSE 579 (976)
Q Consensus 518 ~~~vivI~atn~~~~ld~aL~r~gRf~~-------~i~~~~P~~----~er~~Il~~~l~~----~~---~~~~~~~l~~ 579 (976)
..++.||++||.. +...+ ..|+|.. .+.+..|.. ++...++..++.. .+ ..++.+.+..
T Consensus 270 ~~~~rii~at~~~--l~~~~-~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 346 (387)
T 1ny5_A 270 EVNVRILAATNRN--IKELV-KEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQEL 346 (387)
T ss_dssp ECCCEEEEEESSC--HHHHH-HTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHH
T ss_pred eccEEEEEeCCCC--HHHHH-HcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 1256788898872 22222 2234422 223334444 4555555554433 22 2357777777
Q ss_pred HHHHccCCCHHHHHHHHHHHHHH
Q 002045 580 LAASCVGYCGADLKALCTEAAIR 602 (976)
Q Consensus 580 lA~~t~G~s~~dI~~l~~~A~~~ 602 (976)
|..+.---+-++|++++..|+..
T Consensus 347 l~~~~wpGNvreL~~~i~~~~~~ 369 (387)
T 1ny5_A 347 LLSYPWYGNVRELKNVIERAVLF 369 (387)
T ss_dssp HHHSCCTTHHHHHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHHHHHHh
Confidence 77655333557999998887753
No 207
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.61 E-value=4.8e-09 Score=125.83 Aligned_cols=131 Identities=9% Similarity=0.080 Sum_probs=80.4
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeeec----CCcccccCCC----CCChHHHHHHHHHHHHhcCCceEeccccchh
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSL----GLPALLSDPS----AKTPEEALVHIFGEARRTTPSILYIPQFNLW 776 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~----~~~~l~~~~~----~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l 776 (976)
++||+||||||||++|+++|+.+. ..++.. ....+..... .|.... ....+..| ..+|||||||+.+
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~-r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~-~~G~l~~A---~~gil~IDEid~l 403 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAP-RAVYTTGKGSTAAGLTAAVVREKGTGEYYL-EAGALVLA---DGGIAVIDEIDKM 403 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCS-CEECCCTTCSTTTTSEEECSSGGGTSSCSE-EECHHHHH---SSSEECCTTTTCC
T ss_pred ceEEECCCchHHHHHHHHHHHhCC-CceecCCCccccccccceeeeccccccccc-cCCeeEec---CCCcEEeehhhhC
Confidence 799999999999999999999873 333332 2222221110 111000 00122223 3589999999998
Q ss_pred HHHHHHHHHHHHHHHHhhCC-----------CCCCEEEEEecCCCcc------------cCcCCCCCCcCCc-cEEEecC
Q 002045 777 WENAHEQLRAVLLTLLEELP-----------SHLPILLLGSSSVPLA------------EVEGDPSTVFPLR-SVYQVEK 832 (976)
Q Consensus 777 ~~~~~~~~~~~l~~ll~~~~-----------~~~~v~vi~ttn~~~~------------~Ld~~~~~~~~~r-~~i~v~~ 832 (976)
....+. .|+..|+.-. ...++.||||||.+.. .|++ +.+.++. .++.++.
T Consensus 404 ~~~~q~----~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~--aLl~RFDl~~~~~~~ 477 (595)
T 3f9v_A 404 RDEDRV----AIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPP--TILSRFDLIFILKDQ 477 (595)
T ss_dssp CSHHHH----HHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCS--SSGGGCSCCEEECCT
T ss_pred CHhHhh----hhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCH--HHHhhCeEEEEeCCC
Confidence 765444 4555665321 1347789999997721 5776 6666654 3444677
Q ss_pred CCHHHHHHHHHHHHH
Q 002045 833 PSTEDRSLFLGRLIE 847 (976)
Q Consensus 833 P~~~er~~i~~~~l~ 847 (976)
|+.+ ...|.++++.
T Consensus 478 ~~~e-~~~i~~~il~ 491 (595)
T 3f9v_A 478 PGEQ-DRELANYILD 491 (595)
T ss_dssp THHH-HHHHHHHHHT
T ss_pred CCHH-HHHHHHHHHH
Confidence 7777 7788877775
No 208
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.60 E-value=6.7e-07 Score=99.87 Aligned_cols=190 Identities=17% Similarity=0.075 Sum_probs=109.7
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecch--
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA-- 452 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~-- 452 (976)
......++|.+..++.|.+ +.. ..++|+||+|+|||++++.+++.+.. .+.++...+.
T Consensus 9 ~~~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~---~~~~~~~~~~~~ 68 (357)
T 2fna_A 9 KDNRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNL---PYIYLDLRKFEE 68 (357)
T ss_dssp CCSGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTC---CEEEEEGGGGTT
T ss_pred CCCHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCC---CEEEEEchhhcc
Confidence 3455678999998888876 421 47999999999999999999998742 2333333221
Q ss_pred -------hHHhhhHhHH-----------------------------------HHHHHHHHHHHHhc--CCcEEEEccccc
Q 002045 453 -------DVLSKWVGEA-----------------------------------ERQLKLLFEEAQRN--QPSIIFFDEIDG 488 (976)
Q Consensus 453 -------~l~~~~~g~~-----------------------------------~~~l~~~f~~a~~~--~p~VL~iDEid~ 488 (976)
.++....... ...+..++...... .|.||||||+|.
T Consensus 69 ~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~ 148 (357)
T 2fna_A 69 RNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQE 148 (357)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGG
T ss_pred ccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHH
Confidence 1111100000 01233444444432 388999999998
Q ss_pred cCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCccccchh-----hc--CCCCCccccCCCCCCHHHHHHHH
Q 002045 489 LAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGA-----LR--RPGRFDREFNFPLPGCEARAEIL 561 (976)
Q Consensus 489 L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~a-----L~--r~gRf~~~i~~~~P~~~er~~Il 561 (976)
+..... ..++..|...++.. .++.||.+++....+... .. -.+|+...+.+++++.++..+++
T Consensus 149 ~~~~~~-------~~~~~~l~~~~~~~---~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l 218 (357)
T 2fna_A 149 LVKLRG-------VNLLPALAYAYDNL---KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFL 218 (357)
T ss_dssp GGGCTT-------CCCHHHHHHHHHHC---TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHH
T ss_pred hhccCc-------hhHHHHHHHHHHcC---CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHH
Confidence 853100 11122222233321 245555555543222211 00 12356678899999999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHH
Q 002045 562 DIHTRKWKQPPSRELKSELAASCVGYCGADLKALCT 597 (976)
Q Consensus 562 ~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~ 597 (976)
...+...+...+.. ..+...+.|+. .-+..++.
T Consensus 219 ~~~~~~~~~~~~~~--~~i~~~t~G~P-~~l~~~~~ 251 (357)
T 2fna_A 219 RRGFQEADIDFKDY--EVVYEKIGGIP-GWLTYFGF 251 (357)
T ss_dssp HHHHHHHTCCCCCH--HHHHHHHCSCH-HHHHHHHH
T ss_pred HHHHHHcCCCCCcH--HHHHHHhCCCH-HHHHHHHH
Confidence 88776444444433 67888888864 44555544
No 209
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.59 E-value=1.8e-07 Score=104.63 Aligned_cols=126 Identities=11% Similarity=0.082 Sum_probs=80.9
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCC----CeeecCCcccccCCCCCChHHHHHHHHHHHHh------cCCceEeccccc
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKF----PVHSLGLPALLSDPSAKTPEEALVHIFGEARR------TTPSILYIPQFN 774 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~----~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~------~~p~ilfiDEid 774 (976)
++||+||||||||++|+++|+.+.+. .++.++.+... | ...++.++..... ..+.|++|||+|
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~-----~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~ 120 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR-----G--IDVVRNQIKDFASTRQIFSKGFKLIILDEAD 120 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC-----S--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccc-----c--HHHHHHHHHHHHhhcccCCCCceEEEEeCCC
Confidence 59999999999999999999986432 24555543321 1 2344444433221 236899999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 775 LWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 775 ~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
.+..... +.|+.+|+..+. .+.+|.+||.+ ..+.+ +.+.+ -.++.|.+++.++..+++..++.
T Consensus 121 ~l~~~~~----~~L~~~le~~~~--~~~~il~~n~~-~~i~~--~i~sR-~~~~~~~~l~~~~~~~~l~~~~~ 183 (340)
T 1sxj_C 121 AMTNAAQ----NALRRVIERYTK--NTRFCVLANYA-HKLTP--ALLSQ-CTRFRFQPLPQEAIERRIANVLV 183 (340)
T ss_dssp GSCHHHH----HHHHHHHHHTTT--TEEEEEEESCG-GGSCH--HHHTT-SEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCCHHHH----HHHHHHHhcCCC--CeEEEEEecCc-cccch--hHHhh-ceeEeccCCCHHHHHHHHHHHHH
Confidence 9875443 446666665543 34455566766 44544 22222 14788999999998888887764
No 210
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.57 E-value=3.9e-08 Score=86.48 Aligned_cols=78 Identities=33% Similarity=0.486 Sum_probs=67.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCccccCcccccccccceeE
Q 002045 548 NFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTV 627 (976)
Q Consensus 548 ~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~i 627 (976)
.-.+|+.++|.+||+.+++++.+..+.+ +..||..|.||||+||.++|++|++.++++.. ..|
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvd-l~~LA~~T~G~SGADL~~l~~eAa~~alr~~~----------------~~I 69 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGIN-LRKIAELMPGASGAEVKGVCTEAGMYALRERR----------------VHV 69 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCC-CHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTC----------------SEE
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccC-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcC----------------CCC
Confidence 4578999999999999999887654444 48899999999999999999999999998752 358
Q ss_pred eehhhhhcccccccc
Q 002045 628 EKYHFIEAMSTITPA 642 (976)
Q Consensus 628 t~~df~~al~~i~p~ 642 (976)
+.+||..|+..+.|.
T Consensus 70 ~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 70 TQEDFEMAVAKVMQK 84 (86)
T ss_dssp CHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHccC
Confidence 999999999888764
No 211
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.57 E-value=2.7e-08 Score=97.52 Aligned_cols=105 Identities=17% Similarity=0.265 Sum_probs=63.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccccCC
Q 002045 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAP 491 (976)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~L~~ 491 (976)
+...++|+||+|+|||+|+++++..+...+.. .+.+++.++... +....+.||+|||++.+.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~--~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~ 97 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKN--AAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGN 97 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCC--EEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCc--EEEEcHHHhhHH---------------HHHhCCCEEEEeCccccCh
Confidence 45689999999999999999999998655433 344555554432 0123477999999987642
Q ss_pred CCCChhhhhHHHHHHHHHHHhhccCCCCcE-EEEecCCCccccc--hhhcCCCCCccc
Q 002045 492 VRSSKQEQIHNSIVSTLLALMDGLDSRGQV-VLIGATNRVDAID--GALRRPGRFDRE 546 (976)
Q Consensus 492 ~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~v-ivI~atn~~~~ld--~aL~r~gRf~~~ 546 (976)
. . ...|+..++.....+.. +||++...|..+. +.|.+ |+..-
T Consensus 98 ~--------~---~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g 142 (149)
T 2kjq_A 98 E--------E---QALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRT--RMAYC 142 (149)
T ss_dssp H--------H---HHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHH--HGGGS
T ss_pred H--------H---HHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHH--HHhcC
Confidence 1 1 22344444333333333 5554443454332 67776 66443
No 212
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.56 E-value=1.7e-08 Score=110.03 Aligned_cols=122 Identities=17% Similarity=0.185 Sum_probs=67.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhhhHhHHHHHHHHHHHHHHhcCCcEEEEccccc
Q 002045 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDG 488 (976)
Q Consensus 409 ~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEid~ 488 (976)
|+.+...++|+||||||||+||.++|... +..+.|+.....+.+..+....+..+..+++.+.... +||||+++.
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~---G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~a 193 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEAL---GGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKN 193 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHH---HTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTT
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhC---CCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccc
Confidence 34556778999999999999999999873 3345566652222222222344555566666665554 999999999
Q ss_pred cCCCCCChhh-hhHHHHHHHHHHHhhccCCCCcEEEEecCCCccccchh
Q 002045 489 LAPVRSSKQE-QIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGA 536 (976)
Q Consensus 489 L~~~r~~~~~-~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~a 536 (976)
+.+....... ....+.+.+++..|..+....++.+|+++|. ...+++
T Consensus 194 L~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp-~s~dea 241 (331)
T 2vhj_A 194 VIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP-TSNDDK 241 (331)
T ss_dssp TC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC-SSCSSS
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCC-cccchh
Confidence 8654322100 0011233344444433322335677777773 344443
No 213
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.56 E-value=8.9e-08 Score=108.21 Aligned_cols=191 Identities=23% Similarity=0.301 Sum_probs=116.1
Q ss_pred cccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHhh--
Q 002045 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSK-- 457 (976)
Q Consensus 380 ~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~~-- 457 (976)
.++|.......+.+.+... . .....+||+|++||||+++|+++........ .|+.++|+.+...
T Consensus 130 ~~ig~s~~~~~~~~~~~~~-------a----~~~~~vli~GesGtGKe~lAr~ih~~s~r~~---~fv~vnc~~~~~~~~ 195 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKI-------A----KSKAPVLITGESGTGKEIVARLIHRYSGRKG---AFVDLNCASIPQELA 195 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHH-------H----TSCSCEEEECCTTSSHHHHHHHHHHHHCCCS---CEEEEESSSSCTTTH
T ss_pred cccccchHHHHHHhhhhhh-------h----ccchhheEEeCCCchHHHHHHHHHHhccccC---CcEEEEcccCChHHH
Confidence 5778777777776655331 1 2345699999999999999999998775443 2889999765322
Q ss_pred ---hHhHHHH-------HHHHHHHHHHhcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccC-----CC----
Q 002045 458 ---WVGEAER-------QLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-----SR---- 518 (976)
Q Consensus 458 ---~~g~~~~-------~l~~~f~~a~~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~-----~~---- 518 (976)
.+|.... .....|..|.. .+||||||+.|. ..++..|+..|+.-. ..
T Consensus 196 ~~~lfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~ 261 (368)
T 3dzd_A 196 ESELFGHEKGAFTGALTRKKGKLELADQ---GTLFLDEVGELD-----------QRVQAKLLRVLETGSFTRLGGNQKIE 261 (368)
T ss_dssp HHHHHEECSCSSSSCCCCEECHHHHTTT---SEEEEETGGGSC-----------HHHHHHHHHHHHHSEECCBTCCCBEE
T ss_pred HHHhcCccccccCCcccccCChHhhcCC---CeEEecChhhCC-----------HHHHHHHHHHHHhCCcccCCCCccee
Confidence 1111000 01123444433 399999999883 567777888886321 11
Q ss_pred CcEEEEecCCCccccchhhcCCCCCcc---------ccCCCCCCH--HHHHHHHHHHHhc----CC---CCCCHHHHHHH
Q 002045 519 GQVVLIGATNRVDAIDGALRRPGRFDR---------EFNFPLPGC--EARAEILDIHTRK----WK---QPPSRELKSEL 580 (976)
Q Consensus 519 ~~vivI~atn~~~~ld~aL~r~gRf~~---------~i~~~~P~~--~er~~Il~~~l~~----~~---~~~~~~~l~~l 580 (976)
-.+.||++||.. +...+ ..|+|.. .|.+|+... ++...++..++.. .+ ..++.+.+..|
T Consensus 262 ~~~rii~at~~~--l~~~v-~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 338 (368)
T 3dzd_A 262 VDIRVISATNKN--LEEEI-KKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYL 338 (368)
T ss_dssp CCCEEEEEESSC--HHHHH-HTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHH
T ss_pred eeeEEEEecCCC--HHHHH-HcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 146688888862 22221 2233422 355665544 5555666555543 22 34778888777
Q ss_pred HHHccCCCHHHHHHHHHHHHH
Q 002045 581 AASCVGYCGADLKALCTEAAI 601 (976)
Q Consensus 581 A~~t~G~s~~dI~~l~~~A~~ 601 (976)
..+.=--+-+++++++..|+.
T Consensus 339 ~~~~wpGNvreL~n~i~~~~~ 359 (368)
T 3dzd_A 339 MKQEWKGNVRELKNLIERAVI 359 (368)
T ss_dssp HTCCCTTHHHHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHHHHHH
Confidence 766523355788888887764
No 214
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.55 E-value=7.8e-08 Score=83.07 Aligned_cols=74 Identities=36% Similarity=0.541 Sum_probs=63.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCccccCcccccccccceeEee
Q 002045 550 PLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEK 629 (976)
Q Consensus 550 ~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~it~ 629 (976)
|+|+.++|.+||+.+++++.+..+.+ +..||..|.||||+||.++|++|++.++++.. ..|+.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~d-l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~----------------~~i~~ 63 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGIN-LRKIAELMPGASGAEVKGVCTEAGMYALRERR----------------VHVTQ 63 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCC-HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC----------------SEECH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccC-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC----------------CCCCH
Confidence 68999999999999999887654444 58999999999999999999999999998742 35899
Q ss_pred hhhhhcccccc
Q 002045 630 YHFIEAMSTIT 640 (976)
Q Consensus 630 ~df~~al~~i~ 640 (976)
+||..|+..+.
T Consensus 64 ~d~~~Al~~v~ 74 (78)
T 3kw6_A 64 EDFEMAVAKVM 74 (78)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987764
No 215
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.53 E-value=1.9e-07 Score=96.05 Aligned_cols=103 Identities=16% Similarity=0.191 Sum_probs=60.4
Q ss_pred CCCcccccChH----HHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEec
Q 002045 375 SVSFDDIGGLS----EYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (976)
Q Consensus 375 ~~~~~~i~G~~----~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~ 450 (976)
..+|+++++.. .+++.+..++... + ....+.+++|+||||||||++|++++..+...+.. ++.++
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~--~~~~~ 89 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEY---E------PGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVS--SLIVY 89 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHC---C------SSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCC--EEEEE
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHh---h------hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCe--EEEEE
Confidence 45788877644 2344444444321 0 00123799999999999999999999999766543 44556
Q ss_pred chhHHhhhHhHHH-HHHHHHHHHHHhcCCcEEEEccccccC
Q 002045 451 GADVLSKWVGEAE-RQLKLLFEEAQRNQPSIIFFDEIDGLA 490 (976)
Q Consensus 451 ~~~l~~~~~g~~~-~~l~~~f~~a~~~~p~VL~iDEid~L~ 490 (976)
+.++...+..... ..+..++..... +.+|||||++.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 90 VPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred hHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 6665543322110 011223333332 3599999997653
No 216
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.52 E-value=2.9e-08 Score=100.23 Aligned_cols=100 Identities=13% Similarity=0.093 Sum_probs=57.4
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc---CCCeeecCCcccccCCC----CCChHHHHHHHHHHHHhcCCceEeccccchh
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE---KFPVHSLGLPALLSDPS----AKTPEEALVHIFGEARRTTPSILYIPQFNLW 776 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~---~~~~~~~~~~~l~~~~~----~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l 776 (976)
.+++|+||||||||+|+++++..+. +..++.++..+++..+. .+... .++.. -..|.||+|||++..
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDT----KFLKT--VLNSPVLVLDDLGSE 112 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCS----HHHHH--HHTCSEEEEETCSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHH----HHHHH--hcCCCEEEEeCCCCC
Confidence 5699999999999999999999863 44555555544432110 00101 11222 235789999999853
Q ss_pred H--HHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccC
Q 002045 777 W--ENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEV 814 (976)
Q Consensus 777 ~--~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~L 814 (976)
. ..... .|..+|+.... .+..+|.|||.++..+
T Consensus 113 ~~~~~~~~----~l~~ll~~~~~-~~~~ii~tsn~~~~~~ 147 (180)
T 3ec2_A 113 RLSDWQRE----LISYIITYRYN-NLKSTIITTNYSLQRE 147 (180)
T ss_dssp CCCHHHHH----HHHHHHHHHHH-TTCEEEEECCCCSCC-
T ss_pred cCCHHHHH----HHHHHHHHHHH-cCCCEEEEcCCChhHh
Confidence 2 22233 33344433321 2345666888774443
No 217
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.47 E-value=3.3e-07 Score=104.90 Aligned_cols=141 Identities=12% Similarity=0.077 Sum_probs=85.9
Q ss_pred Cceee--ccCCCCcHhhHHHHHHHhhc--------CCCeeecCCccccc------------CC---CCCC-hHHHHHHHH
Q 002045 704 PRLLL--CGSEGTGVDHLGPAILHELE--------KFPVHSLGLPALLS------------DP---SAKT-PEEALVHIF 757 (976)
Q Consensus 704 ~~~Ll--~G~pGtGKT~lA~aia~~l~--------~~~~~~~~~~~l~~------------~~---~~g~-~e~~~~~~f 757 (976)
..++| +||||||||+|++++++.+. +..++.+++....+ +. ..|. ....+..+.
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~ 130 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALV 130 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 35888 99999999999999998763 34566666422110 00 0122 122233333
Q ss_pred HHHH-hcCCceEeccccchhHHH--HHHHHHHHHHHHHhhCCC-C--CCEEEEEecCCCccc---Cc---CCCCCCcCCc
Q 002045 758 GEAR-RTTPSILYIPQFNLWWEN--AHEQLRAVLLTLLEELPS-H--LPILLLGSSSVPLAE---VE---GDPSTVFPLR 825 (976)
Q Consensus 758 ~~a~-~~~p~ilfiDEid~l~~~--~~~~~~~~l~~ll~~~~~-~--~~v~vi~ttn~~~~~---Ld---~~~~~~~~~r 825 (976)
.... ...|.||+|||++.+... ....++..|..++..+.. . .++.||+||+.+ .. ++ +.....+.
T Consensus 131 ~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~-~~~~~l~~~~~~~~~~~~-- 207 (412)
T 1w5s_A 131 DNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDV-RALSYMREKIPQVESQIG-- 207 (412)
T ss_dssp HHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEET-HHHHHHHHHCHHHHTTCS--
T ss_pred HHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccc-cHHHHHhhhcchhhhhcC--
Confidence 3322 245889999999998642 123444445555655541 3 688888888766 32 22 21112222
Q ss_pred cEEEecCCCHHHHHHHHHHHHH
Q 002045 826 SVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 826 ~~i~v~~P~~~er~~i~~~~l~ 847 (976)
..+.+++++.++..+||+..+.
T Consensus 208 ~~i~l~~l~~~e~~~ll~~~~~ 229 (412)
T 1w5s_A 208 FKLHLPAYKSRELYTILEQRAE 229 (412)
T ss_dssp EEEECCCCCHHHHHHHHHHHHH
T ss_pred CeeeeCCCCHHHHHHHHHHHHH
Confidence 2388999999999999988776
No 218
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.47 E-value=2e-07 Score=91.20 Aligned_cols=92 Identities=15% Similarity=0.123 Sum_probs=59.6
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHHHH
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAH 781 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~~ 781 (976)
..++|+||+|+|||+|+++++..+. +..++.++..++... +....|.||+|||++.+.....
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~----------------~~~~~~~lLilDE~~~~~~~~~ 100 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT----------------DAAFEAEYLAVDQVEKLGNEEQ 100 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC----------------GGGGGCSEEEEESTTCCCSHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH----------------HHHhCCCEEEEeCccccChHHH
Confidence 4689999999999999999999763 334666666555432 1123578999999999765454
Q ss_pred HHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCc
Q 002045 782 EQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVE 815 (976)
Q Consensus 782 ~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld 815 (976)
..+...+..+.+. ...++|| |||.++..+.
T Consensus 101 ~~l~~li~~~~~~---g~~~iii-ts~~~p~~l~ 130 (149)
T 2kjq_A 101 ALLFSIFNRFRNS---GKGFLLL-GSEYTPQQLV 130 (149)
T ss_dssp HHHHHHHHHHHHH---TCCEEEE-EESSCTTTSS
T ss_pred HHHHHHHHHHHHc---CCcEEEE-ECCCCHHHcc
Confidence 4444444444432 2223444 6665545554
No 219
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.39 E-value=1.4e-07 Score=107.53 Aligned_cols=138 Identities=17% Similarity=0.199 Sum_probs=87.1
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCccccc--------CC----CCCChHHHHHHHHHHHHhcCCceEec
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLS--------DP----SAKTPEEALVHIFGEARRTTPSILYI 770 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~--------~~----~~g~~e~~~~~~f~~a~~~~p~ilfi 770 (976)
.+||+|++||||+++|++|+.... ..+|+.++++.+-. ++ +.|... ....+|..|. .++|||
T Consensus 162 ~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~-~~~g~~~~a~---~gtlfl 237 (387)
T 1ny5_A 162 PVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVS-SKEGFFELAD---GGTLFL 237 (387)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCS-CBCCHHHHTT---TSEEEE
T ss_pred CeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCccc-ccCCceeeCC---CcEEEE
Confidence 489999999999999999998743 25899999875421 11 111111 1123455443 479999
Q ss_pred cccchhHHHHHHHHHHHHHHH-HhhCCC----CCCEEEEEecCCCcccCcCCCCCCcCCc-----cEEEecCCCHHHHHH
Q 002045 771 PQFNLWWENAHEQLRAVLLTL-LEELPS----HLPILLLGSSSVPLAEVEGDPSTVFPLR-----SVYQVEKPSTEDRSL 840 (976)
Q Consensus 771 DEid~l~~~~~~~~~~~l~~l-l~~~~~----~~~v~vi~ttn~~~~~Ld~~~~~~~~~r-----~~i~v~~P~~~er~~ 840 (976)
|||+.+....+..+++.|..- +..+.. ...+.||+|||.....+-. .+.|+.. .++.+..|...+|.+
T Consensus 238 dei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~--~g~fr~dl~~rl~~~~i~lPpLreR~~ 315 (387)
T 1ny5_A 238 DEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVK--EGKFREDLYYRLGVIEIEIPPLRERKE 315 (387)
T ss_dssp ESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHH--TTSSCHHHHHHHTTEEEECCCGGGCHH
T ss_pred cChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHH--cCCccHHHHHhhcCCeecCCcchhccc
Confidence 999999887777655544321 111211 2467899999987444433 5555532 567788899888765
Q ss_pred HHHHHHHH
Q 002045 841 FLGRLIEA 848 (976)
Q Consensus 841 i~~~~l~~ 848 (976)
-+..++..
T Consensus 316 Di~~l~~~ 323 (387)
T 1ny5_A 316 DIIPLANH 323 (387)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 44444443
No 220
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.37 E-value=2.7e-07 Score=100.58 Aligned_cols=106 Identities=12% Similarity=0.046 Sum_probs=65.5
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCC--eeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHHHHH
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFP--VHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHE 782 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~--~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~~~~ 782 (976)
.+||+||||||||+||.++|... +.+ |+.+...+.++.+ ....+..+..++..+.... +||||+++.+......
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~~-G~~VlyIs~~~eE~v~~~-~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~ 200 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEAL-GGKDKYATVRFGEPLSGY-NTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGG 200 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHHH-HTTSCCEEEEBSCSSTTC-BCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-----
T ss_pred EEEEEcCCCCCHHHHHHHHHHhC-CCCEEEEEecchhhhhhh-hcCHHHHHHHHHHHHhhCC--EEEEeccccccccccc
Confidence 47999999999999999999873 434 5555224444443 2556667777777776654 9999999998643221
Q ss_pred --------HHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcC
Q 002045 783 --------QLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEG 816 (976)
Q Consensus 783 --------~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~ 816 (976)
+..+.++..|..+-...++.+|+++|.. .+++
T Consensus 201 ~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp~--s~de 240 (331)
T 2vhj_A 201 NTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPT--SNDD 240 (331)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHTCEEEEECCCS--SCSS
T ss_pred ccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCCc--ccch
Confidence 3233333344333233456677788833 4444
No 221
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.36 E-value=5.1e-08 Score=100.30 Aligned_cols=106 Identities=15% Similarity=0.173 Sum_probs=58.9
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH--
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-- 779 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~-- 779 (976)
.+++|+||||||||++|+++++.+. +.+++.++++.++......-....+..++..... +.+|||||++.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~~~~~ 132 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEAMSSW 132 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC---CC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCcCCHH
Confidence 5799999999999999999999763 3566666665543211000000012233333333 469999999765322
Q ss_pred HHHHHHH-HHHHHHhhCCCCCCEEEEEecCCCcccCcC
Q 002045 780 AHEQLRA-VLLTLLEELPSHLPILLLGSSSVPLAEVEG 816 (976)
Q Consensus 780 ~~~~~~~-~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~ 816 (976)
.+..++. .+..... ....+|.|||.++..|..
T Consensus 133 ~~~~ll~~~l~~~~~-----~~~~~i~tsn~~~~~l~~ 165 (202)
T 2w58_A 133 VRDDVFGPILQYRMF-----ENLPTFFTSNFDMQQLAH 165 (202)
T ss_dssp GGGTTHHHHHHHHHH-----TTCCEEEEESSCHHHHHH
T ss_pred HHHHHHHHHHHHHHh-----CCCCEEEEcCCCHHHHHH
Confidence 2333332 2222221 123466788877566554
No 222
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.36 E-value=1.9e-07 Score=102.84 Aligned_cols=100 Identities=20% Similarity=0.285 Sum_probs=58.7
Q ss_pred CCcccccChH----HHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHh-hcCCcEEEEEec
Q 002045 376 VSFDDIGGLS----EYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAAS-KAGQKVSFYMRK 450 (976)
Q Consensus 376 ~~~~~i~G~~----~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~-~~~~~~~~~~~~ 450 (976)
.+|+++.+.. .++..+..++.. ++-....+++|+||||||||+||+++|+.+. ..+..+.+ ++
T Consensus 121 ~tfd~f~~~~~~~~~~~~~~~~~i~~----------~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~--~~ 188 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSAILDFVEQ----------YPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTL--LH 188 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHHHHHHHHH----------CSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEE--EE
T ss_pred CCHhhCcCCChHHHHHHHHHHHHHHh----------ccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEE--EE
Confidence 5788876532 233444444432 1112357999999999999999999999998 77655444 45
Q ss_pred chhHHhhhHhHH-HHHHHHHHHHHHhcCCcEEEEcccccc
Q 002045 451 GADVLSKWVGEA-ERQLKLLFEEAQRNQPSIIFFDEIDGL 489 (976)
Q Consensus 451 ~~~l~~~~~g~~-~~~l~~~f~~a~~~~p~VL~iDEid~L 489 (976)
+.+++..+.... ...+..++.... .+.||||||++..
T Consensus 189 ~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 189 FPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred HHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 555554332210 011112222222 3459999999654
No 223
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.36 E-value=3.2e-07 Score=81.10 Aligned_cols=75 Identities=24% Similarity=0.421 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCccccCcccccccccceeEeehhh
Q 002045 553 GCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHF 632 (976)
Q Consensus 553 ~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~it~~df 632 (976)
+.++|.+||+.++++.++..+.+ +..||..|.||||+||.++|++|++.++++... .|+..||
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvd-l~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~----------------~i~~~df 64 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIR-WELISRLCPNSTGAELRSVCTEAGMFAIRARRK----------------VATEKDF 64 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCC-HHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCS----------------SBCHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccC-HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccc----------------cCCHHHH
Confidence 45789999999999988765554 489999999999999999999999999997432 3899999
Q ss_pred hhcccccccccc
Q 002045 633 IEAMSTITPAAH 644 (976)
Q Consensus 633 ~~al~~i~p~~~ 644 (976)
..|+..+.+...
T Consensus 65 ~~Al~~v~~~~~ 76 (88)
T 3vlf_B 65 LKAVDKVISGYK 76 (88)
T ss_dssp HHHHHHHTC---
T ss_pred HHHHHHHhcCcc
Confidence 999998876543
No 224
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.33 E-value=3.1e-07 Score=103.75 Aligned_cols=137 Identities=18% Similarity=0.164 Sum_probs=83.5
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcC-CCeeecCCcccccCC------------CCCChHHHHHHHHHHHHhcCCceEecc
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEK-FPVHSLGLPALLSDP------------SAKTPEEALVHIFGEARRTTPSILYIP 771 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~-~~~~~~~~~~l~~~~------------~~g~~e~~~~~~f~~a~~~~p~ilfiD 771 (976)
.+||+|++||||+++|++|+..... .+|+.++|+.+-... +.|... .-...|..| ..++||||
T Consensus 154 ~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~-~~~g~~~~a---~~gtlfld 229 (368)
T 3dzd_A 154 PVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALT-RKKGKLELA---DQGTLFLD 229 (368)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCC-CEECHHHHT---TTSEEEEE
T ss_pred hheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCccc-ccCChHhhc---CCCeEEec
Confidence 4999999999999999999987532 239999987643211 011100 011244444 34689999
Q ss_pred ccchhHHHHHHHHHHHHHHH-HhhCCC----CCCEEEEEecCCCcccCcCCCCCCcCCc-----cEEEecCCCHHHHHHH
Q 002045 772 QFNLWWENAHEQLRAVLLTL-LEELPS----HLPILLLGSSSVPLAEVEGDPSTVFPLR-----SVYQVEKPSTEDRSLF 841 (976)
Q Consensus 772 Eid~l~~~~~~~~~~~l~~l-l~~~~~----~~~v~vi~ttn~~~~~Ld~~~~~~~~~r-----~~i~v~~P~~~er~~i 841 (976)
||+.+....+..++..|..- +..+.+ ...+-||+|||.....+-. .+.|+.. .++.+.+|...+|.+-
T Consensus 230 ei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~--~g~fr~dL~~rl~~~~i~lPpLreR~~D 307 (368)
T 3dzd_A 230 EVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIK--KGNFREDLYYRLSVFQIYLPPLRERGKD 307 (368)
T ss_dssp TGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHH--TTSSCHHHHHHHTSEEEECCCGGGSTTH
T ss_pred ChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHH--cCCccHHHHHHhCCeEEeCCChhhchhh
Confidence 99999887777654444211 111111 2357789999977444333 5555532 5777888888777543
Q ss_pred HHHHHH
Q 002045 842 LGRLIE 847 (976)
Q Consensus 842 ~~~~l~ 847 (976)
+..++.
T Consensus 308 i~~l~~ 313 (368)
T 3dzd_A 308 VILLAE 313 (368)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 225
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.30 E-value=1.2e-07 Score=104.42 Aligned_cols=106 Identities=18% Similarity=0.236 Sum_probs=59.5
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc---CCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH-
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE---KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN- 779 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~---~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~- 779 (976)
.+++|+||||||||+||.+||+.+. +.+++.+.++.++......-....+..++.... .+.||||||++.....
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~~~~~ 230 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAEQATS 230 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-----
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCCCCH
Confidence 5799999999999999999999764 356776766655432100000111222233332 3469999999764321
Q ss_pred -HHHHHHH-HHHHHHhhCCCCCCEEEEEecCCCcccCcC
Q 002045 780 -AHEQLRA-VLLTLLEELPSHLPILLLGSSSVPLAEVEG 816 (976)
Q Consensus 780 -~~~~~~~-~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~ 816 (976)
....++. .|...+.. +..+|.|||.++..|..
T Consensus 231 ~~~~~ll~~ll~~r~~~-----~~~~IitSN~~~~~l~~ 264 (308)
T 2qgz_A 231 WVRDEVLQVILQYRMLE-----ELPTFFTSNYSFADLER 264 (308)
T ss_dssp -CTTTTHHHHHHHHHHH-----TCCEEEEESSCHHHHHT
T ss_pred HHHHHHHHHHHHHHHHC-----CCcEEEECCCCHHHHHH
Confidence 2222333 23222211 22467788988777765
No 226
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.21 E-value=1e-06 Score=99.26 Aligned_cols=119 Identities=20% Similarity=0.178 Sum_probs=75.6
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhH-HhhhHhHHHHHHHHHHHHHHhcCCcEEEEccc
Q 002045 408 YHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV-LSKWVGEAERQLKLLFEEAQRNQPSIIFFDEI 486 (976)
Q Consensus 408 ~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l-~~~~~g~~~~~l~~~f~~a~~~~p~VL~iDEi 486 (976)
++++++..++|+||||+||||++++++..++ ..++.+..... ...++| .+ .+..++|+|++
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~-----g~~~~~~~~~~~~~~~lg-------~~------~q~~~~l~dd~ 225 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCG-----GKALNVNLPLDRLNFELG-------VA------IDQFLVVFEDV 225 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHC-----CEEECCSSCTTTHHHHHG-------GG------TTCSCEEETTC
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcC-----CcEEEEeccchhHHHHHH-------Hh------cchhHHHHHHH
Confidence 4678888999999999999999999998763 22332332211 011111 11 23457899999
Q ss_pred cccCC-CCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCC
Q 002045 487 DGLAP-VRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPL 551 (976)
Q Consensus 487 d~L~~-~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~ 551 (976)
+.+.. .+...... .......+...+++ .+.|+++||+++.+ +++.+||+++..+.+..
T Consensus 226 ~~~~~~~r~l~~~~-~~~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 226 KGTGGESRDLPSGQ-GINNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp CCSTTTTTTCCCCS-HHHHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHHHHHHhhccccC-cchHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 98875 22111100 10122344555553 35677889999999 78999999988777654
No 227
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.19 E-value=6.8e-07 Score=90.89 Aligned_cols=29 Identities=21% Similarity=0.464 Sum_probs=25.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHHh
Q 002045 410 ITPPRGVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~ 438 (976)
++..+++|||||||||||++|.++|+.+.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45567899999999999999999999984
No 228
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.19 E-value=7.3e-07 Score=77.89 Aligned_cols=75 Identities=21% Similarity=0.258 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCccccCcccccccccceeEeehhh
Q 002045 553 GCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHF 632 (976)
Q Consensus 553 ~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~it~~df 632 (976)
+.++|.+||+.+++++.+..+.+ +..||..|.||||+||.++|++|++.++++.. ..|+..||
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vd-l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~----------------~~i~~~df 64 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVD-LEDYVARPDKISGADINSICQESGMLAVRENR----------------YIVLAKDF 64 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCC-THHHHTSSCCCCHHHHHHHHHHHHHGGGTSCC----------------SSBCHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccC-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc----------------CCcCHHHH
Confidence 67899999999999987654444 58999999999999999999999999887642 34899999
Q ss_pred hhcccccccccc
Q 002045 633 IEAMSTITPAAH 644 (976)
Q Consensus 633 ~~al~~i~p~~~ 644 (976)
..|+..+.|...
T Consensus 65 ~~Al~~~~ps~~ 76 (83)
T 3aji_B 65 EKAYKTVIKKDE 76 (83)
T ss_dssp HHHHHHHCC---
T ss_pred HHHHHHHccCch
Confidence 999999988643
No 229
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.19 E-value=9.6e-06 Score=90.60 Aligned_cols=163 Identities=13% Similarity=0.043 Sum_probs=108.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCC-cEEEEEecchhHHhhhHhHHHHHHHHHHHHHH----hcCCcEEEEcc
Q 002045 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQ-KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDE 485 (976)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~-~~~~~~~~~~~l~~~~~g~~~~~l~~~f~~a~----~~~p~VL~iDE 485 (976)
..+..+|||||+|+||+++++++++.+...+. ....+.+++. ..++.+++.+. -+...||+|||
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~plf~~~kvvii~~ 84 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN-----------TDWNAIFSLCQAMSLFASRQTLLLLL 84 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTT-----------CCHHHHHHHHHHHHHCCSCEEEEEEC
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCC-----------CCHHHHHHHhcCcCCccCCeEEEEEC
Confidence 34568999999999999999999998765442 2223334321 11223333332 23356999999
Q ss_pred ccc-cCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCC-----ccccchhhcCCCCCccccCCCCCCHHHHHH
Q 002045 486 IDG-LAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR-----VDAIDGALRRPGRFDREFNFPLPGCEARAE 559 (976)
Q Consensus 486 id~-L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~-----~~~ld~aL~r~gRf~~~i~~~~P~~~er~~ 559 (976)
+|. +. ....+.|+..++... .+.++|+++++. ...+.+++.+ |. .++.|..++..+...
T Consensus 85 ~~~kl~-----------~~~~~aLl~~le~p~-~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 85 PENGPN-----------AAINEQLLTLTGLLH-DDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPR 149 (343)
T ss_dssp CSSCCC-----------TTHHHHHHHHHTTCB-TTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHH
T ss_pred CCCCCC-----------hHHHHHHHHHHhcCC-CCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHH
Confidence 998 63 224556778887533 233444444432 2346778877 54 578899999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 002045 560 ILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAA 600 (976)
Q Consensus 560 Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~ 600 (976)
.++..+...++.++.+.+..|+..+.| +.+.+.+.+...+
T Consensus 150 ~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~ 189 (343)
T 1jr3_D 150 WVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLS 189 (343)
T ss_dssp HHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHH
Confidence 999999999999999998888887765 4455555555443
No 230
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.18 E-value=5.2e-07 Score=92.61 Aligned_cols=130 Identities=17% Similarity=0.213 Sum_probs=74.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHh-----hcCCcEEEEEecchhHHhhhH----------hHHHH--HHHHHHHHH--H
Q 002045 414 RGVLLCGPPGTGKTLIARALACAAS-----KAGQKVSFYMRKGADVLSKWV----------GEAER--QLKLLFEEA--Q 474 (976)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~-----~~~~~~~~~~~~~~~l~~~~~----------g~~~~--~l~~~f~~a--~ 474 (976)
..+|++|+||+|||++|.+++.... ..+. .+++..+..++..... ..... ....+++-+ .
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~-r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 84 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGI-RRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP 84 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSC-CCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCc-eEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc
Confidence 3689999999999999987655542 2231 1222223222211110 00000 001222221 2
Q ss_pred hcCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCC
Q 002045 475 RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPG 553 (976)
Q Consensus 475 ~~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~ 553 (976)
.+..+||||||++.+.+.+....+.. .++..+.... ...+.||.+|+.+..|+.+++. |+...+++..|.
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~~------rll~~l~~~r-~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~ 154 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKIP------ENVQWLNTHR-HQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNK 154 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCCC------HHHHGGGGTT-TTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECS
T ss_pred ccCceEEEEEChhhhccCccccchhH------HHHHHHHhcC-cCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCcc
Confidence 34467999999999976653222111 2555555433 3345667777778999999988 998888887653
No 231
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.98 E-value=8.4e-06 Score=82.88 Aligned_cols=26 Identities=27% Similarity=0.589 Sum_probs=23.6
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcC
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEK 729 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~ 729 (976)
.++||+||||||||++|.++|+.+.+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46999999999999999999999844
No 232
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.85 E-value=2.8e-05 Score=86.56 Aligned_cols=139 Identities=19% Similarity=0.158 Sum_probs=79.9
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCccc--------------------------------ccCCC------C
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPAL--------------------------------LSDPS------A 746 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l--------------------------------~~~~~------~ 746 (976)
.++|+||+|+|||+|++.+++.+. ..++.+++... +.... .
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 110 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELN-LPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGN 110 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT-CCEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSS
T ss_pred cEEEECCCCCCHHHHHHHHHHhcC-CCEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecce
Confidence 589999999999999999999863 34555554321 00000 0
Q ss_pred C-C------hHHHHHHHHHHHHhc--CCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCc--ccC-
Q 002045 747 K-T------PEEALVHIFGEARRT--TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPL--AEV- 814 (976)
Q Consensus 747 g-~------~e~~~~~~f~~a~~~--~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~--~~L- 814 (976)
+ . ....+..++...... .|.||+|||++.+.......+...|..+++.. .++.||.|++... ..+
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~---~~~~~i~~g~~~~~l~~~l 187 (357)
T 2fna_A 111 EIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAYDNL---KRIKFIMSGSEMGLLYDYL 187 (357)
T ss_dssp SEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHHHHHHHC---TTEEEEEEESSHHHHHHHT
T ss_pred EEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHHHHHHcC---CCeEEEEEcCchHHHHHHH
Confidence 0 0 011244454444332 38999999999876521223344454455543 2565666655431 111
Q ss_pred --cCCCCCCcCC-ccEEEecCCCHHHHHHHHHHHHH
Q 002045 815 --EGDPSTVFPL-RSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 815 --d~~~~~~~~~-r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
......++.. ...+.+.+.+.++..+++...+.
T Consensus 188 ~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~ 223 (357)
T 2fna_A 188 RVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQ 223 (357)
T ss_dssp TTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHH
T ss_pred hccCCCCccccCccceeecCCCCHHHHHHHHHHHHH
Confidence 1111122211 15788999999999999988765
No 233
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=97.82 E-value=3.2e-06 Score=73.59 Aligned_cols=69 Identities=23% Similarity=0.247 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCccccCcccccccccceeEeehhhhh
Q 002045 555 EARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIE 634 (976)
Q Consensus 555 ~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s~~dI~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~it~~df~~ 634 (976)
++|.+||+.+++++.+..+.+ +..||..|.||||+||.++|++|++.++++.. ..|+.+||..
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vd-l~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~----------------~~i~~~df~~ 63 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEAD-LDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR----------------YVILQSDLEE 63 (82)
T ss_dssp -------------CEECTTCC-STTTTTSSCCCCHHHHHHHHHHHHHHHHHTTC----------------SEECHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCC-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc----------------CCcCHHHHHH
Confidence 468899999998876544433 47899999999999999999999999999742 2589999999
Q ss_pred cccccc
Q 002045 635 AMSTIT 640 (976)
Q Consensus 635 al~~i~ 640 (976)
|+..+.
T Consensus 64 Al~~v~ 69 (82)
T 2dzn_B 64 AYATQV 69 (82)
T ss_dssp HHHTTC
T ss_pred HHHHHH
Confidence 998875
No 234
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.82 E-value=1.3e-05 Score=85.34 Aligned_cols=27 Identities=41% Similarity=0.509 Sum_probs=24.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHH
Q 002045 411 TPPRGVLLCGPPGTGKTLIARALACAA 437 (976)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l 437 (976)
++.++|+||||||||||++|.+||+.+
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 345689999999999999999999975
No 235
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.82 E-value=9.2e-05 Score=82.15 Aligned_cols=137 Identities=15% Similarity=0.088 Sum_probs=78.2
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCccc-------------------ccC----------------CCC---
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPAL-------------------LSD----------------PSA--- 746 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l-------------------~~~----------------~~~--- 746 (976)
.++|+||+|+|||+|++.+++.+ + ++.+++... +.. ...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNER-P--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPR 109 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS-S--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGG
T ss_pred eEEEECCCcCCHHHHHHHHHHHc-C--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccc
Confidence 58999999999999999999875 3 444443211 000 000
Q ss_pred -CChHHHHHHHHHHHHhcCCceEeccccchhHH---HHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCc--ccC---cCC
Q 002045 747 -KTPEEALVHIFGEARRTTPSILYIPQFNLWWE---NAHEQLRAVLLTLLEELPSHLPILLLGSSSVPL--AEV---EGD 817 (976)
Q Consensus 747 -g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~---~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~--~~L---d~~ 817 (976)
......+..+...+....|.||+|||++.+.. .....+...|..+++.. .++.||.|+.... ..+ ...
T Consensus 110 ~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l~~~~~ 186 (350)
T 2qen_A 110 KLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDY 186 (350)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHC---TTEEEEEEESSHHHHHHHHCTTCT
T ss_pred cchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhc---CCeEEEEECCcHHHHHHHHhhcCC
Confidence 01122222233333333489999999999864 12334555566666554 2555555554321 111 111
Q ss_pred CCCCc-CCccEEEecCCCHHHHHHHHHHHHH
Q 002045 818 PSTVF-PLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 818 ~~~~~-~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
...++ +....+.+.+.+.++-.+++...+.
T Consensus 187 ~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~ 217 (350)
T 2qen_A 187 ESPLYGRIAGEVLVKPFDKDTSVEFLKRGFR 217 (350)
T ss_dssp TSTTTTCCCEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCccccCccceeeCCCCCHHHHHHHHHHHHH
Confidence 11222 1124788999999999999887665
No 236
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.77 E-value=2.2e-05 Score=94.57 Aligned_cols=25 Identities=40% Similarity=0.575 Sum_probs=22.7
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE 728 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~ 728 (976)
..+||+||||||||++|++|+..+.
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 3699999999999999999999863
No 237
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.77 E-value=0.00014 Score=73.20 Aligned_cols=24 Identities=25% Similarity=0.585 Sum_probs=22.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHh
Q 002045 415 GVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (976)
.+.|+||+|+|||||++.|+..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999885
No 238
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.72 E-value=8e-06 Score=83.72 Aligned_cols=125 Identities=11% Similarity=0.120 Sum_probs=65.5
Q ss_pred ceeeccCCCCcHhhHHHHHHHhh-------cC-CCeeecCCcccccCCC------------CCC--hHHHHHHHHHHHHh
Q 002045 705 RLLLCGSEGTGVDHLGPAILHEL-------EK-FPVHSLGLPALLSDPS------------AKT--PEEALVHIFGEARR 762 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l-------~~-~~~~~~~~~~l~~~~~------------~g~--~e~~~~~~f~~a~~ 762 (976)
-.||+|+||||||++|.+++... .+ .+++..++..|...+. .++ ....+...+..+.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~- 85 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE- 85 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc-
Confidence 47899999999999998865442 23 4565555554433221 111 0112222221122
Q ss_pred cCCceEeccccchhHHHH--HHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCCccEEEecCCCH
Q 002045 763 TTPSILYIPQFNLWWENA--HEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPST 835 (976)
Q Consensus 763 ~~p~ilfiDEid~l~~~~--~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~r~~i~v~~P~~ 835 (976)
..++||+|||++.+++.. .-+..+ ++..|.... ...+-||.+|+.+ ..|+. +.+.+....+++..|..
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~~r-ll~~l~~~r-~~~~~iil~tq~~-~~l~~--~lr~ri~~~~~l~~~~~ 155 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKIPE-NVQWLNTHR-HQGIDIFVLTQGP-KLLDQ--NLRTLVRKHYHIASNKM 155 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCCCH-HHHGGGGTT-TTTCEEEEEESCG-GGBCH--HHHTTEEEEEEEEECSS
T ss_pred cCceEEEEEChhhhccCccccchhHH-HHHHHHhcC-cCCeEEEEECCCH-HHHhH--HHHHHhheEEEEcCccc
Confidence 347899999999996431 111111 333343222 3344445555655 77876 32222225566665543
No 239
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.71 E-value=6.2e-05 Score=83.94 Aligned_cols=83 Identities=25% Similarity=0.294 Sum_probs=53.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh--HHhhhH------------hHHHHHHHHHHHHHH
Q 002045 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD--VLSKWV------------GEAERQLKLLFEEAQ 474 (976)
Q Consensus 409 ~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~--l~~~~~------------g~~~~~l~~~f~~a~ 474 (976)
|+++..-++|+||||+|||+|+..++..+...+..+.|+...... ....-+ ...+..+..+...+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 467778899999999999999999999887666556555433210 011001 112222322222333
Q ss_pred hcCCcEEEEccccccCC
Q 002045 475 RNQPSIIFFDEIDGLAP 491 (976)
Q Consensus 475 ~~~p~VL~iDEid~L~~ 491 (976)
...+.+|+||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 46788999999998875
No 240
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.69 E-value=7.4e-05 Score=75.13 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=21.1
Q ss_pred ceeeccCCCCcHhhHHHHHHHhh
Q 002045 705 RLLLCGSEGTGVDHLGPAILHEL 727 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l 727 (976)
.+.|+||+|+|||||+++|+..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 241
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.64 E-value=9.3e-05 Score=77.06 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=31.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEe
Q 002045 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR 449 (976)
Q Consensus 409 ~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~ 449 (976)
|+.+...++|+||+|+|||++++.++..+...+..+.++..
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 45667789999999999999999999776554545555543
No 242
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.62 E-value=0.00064 Score=81.51 Aligned_cols=173 Identities=17% Similarity=0.100 Sum_probs=94.7
Q ss_pred ccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHH---hhcC-CcEEEEEecch--
Q 002045 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAA---SKAG-QKVSFYMRKGA-- 452 (976)
Q Consensus 379 ~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l---~~~~-~~~~~~~~~~~-- 452 (976)
..++|.+..++.|.+.+... ....+-|+|+||+|+|||+||..+++.. .... ..+.++.+...
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~ 192 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDK 192 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCH
T ss_pred CeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCch
Confidence 45899999999998886531 1234679999999999999999998643 2222 13455554432
Q ss_pred -hHHhhhH------h-----------HHHHHHHHHHHHHHh-cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhh
Q 002045 453 -DVLSKWV------G-----------EAERQLKLLFEEAQR-NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMD 513 (976)
Q Consensus 453 -~l~~~~~------g-----------~~~~~l~~~f~~a~~-~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld 513 (976)
.++..+. + ........+...... ..|.+||||+++.. . .+..+
T Consensus 193 ~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-------------~----~l~~l- 254 (591)
T 1z6t_A 193 SGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-------------W----VLKAF- 254 (591)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-------------H----HHHTT-
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-------------H----HHHHh-
Confidence 1111110 0 011111222222222 26889999999742 0 12222
Q ss_pred ccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCC
Q 002045 514 GLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYC 588 (976)
Q Consensus 514 ~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s 588 (976)
..+..||.||...... ..+. +....+..+...+.++-.++|...+.... .........|+..+.|+.
T Consensus 255 ----~~~~~ilvTsR~~~~~-~~~~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~i~~~~~G~P 321 (591)
T 1z6t_A 255 ----DSQCQILLTTRDKSVT-DSVM--GPKYVVPVESSLGKEKGLEILSLFVNMKK-ADLPEQAHSIIKECKGSP 321 (591)
T ss_dssp ----CSSCEEEEEESCGGGG-TTCC--SCEEEEECCSSCCHHHHHHHHHHHHTSCG-GGSCTHHHHHHHHHTTCH
T ss_pred ----cCCCeEEEECCCcHHH-HhcC--CCceEeecCCCCCHHHHHHHHHHHhCCCc-ccccHHHHHHHHHhCCCc
Confidence 1234455565543221 1111 11111122246788999999988775421 111345578999998864
No 243
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.59 E-value=0.00036 Score=83.06 Aligned_cols=172 Identities=13% Similarity=0.078 Sum_probs=97.5
Q ss_pred cChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHH----HHhhcCCcEEEEEecch-----
Q 002045 382 GGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALAC----AASKAGQKVSFYMRKGA----- 452 (976)
Q Consensus 382 ~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~----~l~~~~~~~~~~~~~~~----- 452 (976)
+|.+..++.|.+++... +-...+.|.|+|++|+|||+||+.+++ ........+.|+.+...
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 49999999998887431 112356789999999999999999997 33333334455555442
Q ss_pred -hHHhhhH---hHH-------------HHHHHHHHHHHHhcC-CcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhc
Q 002045 453 -DVLSKWV---GEA-------------ERQLKLLFEEAQRNQ-PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDG 514 (976)
Q Consensus 453 -~l~~~~~---g~~-------------~~~l~~~f~~a~~~~-p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~ 514 (976)
.+..... +.. ...+...+....... .++|+||+++... .+ .+.. .
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~------------~~--~~~~-~-- 263 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE------------TI--RWAQ-E-- 263 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH------------HH--HHHH-H--
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch------------hh--cccc-c--
Confidence 1111111 100 111233333343454 7899999997531 11 1111 1
Q ss_pred cCCCCcEEEEecCCCccccchhhcCCCCCccccCCCCCCHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHccCCC
Q 002045 515 LDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQ-PPSRELKSELAASCVGYC 588 (976)
Q Consensus 515 ~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~-~~~~~~l~~lA~~t~G~s 588 (976)
.+..||.||.... +...+. .....+.++..+.++-.++|..+...... .........|+..+.|+.
T Consensus 264 ----~gs~ilvTTR~~~-v~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 264 ----LRLRCLVTTRDVE-ISNAAS---QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp ----TTCEEEEEESBGG-GGGGCC---SCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred ----CCCEEEEEcCCHH-HHHHcC---CCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCh
Confidence 2334555665422 211111 12346889999999999999887533221 111234577888888863
No 244
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.59 E-value=0.00013 Score=81.78 Aligned_cols=83 Identities=27% Similarity=0.393 Sum_probs=54.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecch--hHHhhhHh------------HHHHHHHHHHHHHH
Q 002045 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA--DVLSKWVG------------EAERQLKLLFEEAQ 474 (976)
Q Consensus 409 ~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~--~l~~~~~g------------~~~~~l~~~f~~a~ 474 (976)
|+++...++|+||||+|||++|..+|..+...+..+.|+....+ .+.....| ..+..+..+...+.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 56777889999999999999999999888766666766655432 11111111 11222222222233
Q ss_pred hcCCcEEEEccccccCC
Q 002045 475 RNQPSIIFFDEIDGLAP 491 (976)
Q Consensus 475 ~~~p~VL~iDEid~L~~ 491 (976)
...+.+||||.+..|.+
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 45688999999999975
No 245
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.56 E-value=7.3e-05 Score=83.51 Aligned_cols=83 Identities=25% Similarity=0.337 Sum_probs=54.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecch--hHHhhhHh------------HHHHHHHHHHHHHH
Q 002045 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA--DVLSKWVG------------EAERQLKLLFEEAQ 474 (976)
Q Consensus 409 ~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~--~l~~~~~g------------~~~~~l~~~f~~a~ 474 (976)
|+++..-++|+||||+|||+|+..++..+...+..+.|+....+ .......| ..+..+..+...+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 56777889999999999999999999888766666666654431 11111111 12222222222333
Q ss_pred hcCCcEEEEccccccCC
Q 002045 475 RNQPSIIFFDEIDGLAP 491 (976)
Q Consensus 475 ~~~p~VL~iDEid~L~~ 491 (976)
...|.+||||++..+.+
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 55689999999999874
No 246
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.51 E-value=0.00013 Score=84.72 Aligned_cols=55 Identities=24% Similarity=0.410 Sum_probs=38.0
Q ss_pred CCCCccccc-ChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC
Q 002045 374 ESVSFDDIG-GLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ 442 (976)
Q Consensus 374 ~~~~~~~i~-G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~ 442 (976)
.+.+|++|- ++..++..+...+.. ....++|.|+||||||+++.+++..+...+.
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~--------------~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKE--------------KKHHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHS--------------SSCEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCccccCCHHHHHHHHHHHHHHhc--------------CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 456777764 455555555444332 1238999999999999999999999977664
No 247
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.47 E-value=0.00027 Score=74.21 Aligned_cols=29 Identities=31% Similarity=0.268 Sum_probs=25.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHH
Q 002045 409 HITPPRGVLLCGPPGTGKTLIARALACAA 437 (976)
Q Consensus 409 ~~~~~~~vLL~GppGtGKT~laralA~~l 437 (976)
|+++..-++|+||||+|||++++.+|..+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46777889999999999999999999853
No 248
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.43 E-value=0.00027 Score=79.00 Aligned_cols=83 Identities=23% Similarity=0.362 Sum_probs=53.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecch--hHHhhhHhH-----------HHHHHHHHHH-HHH
Q 002045 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA--DVLSKWVGE-----------AERQLKLLFE-EAQ 474 (976)
Q Consensus 409 ~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~--~l~~~~~g~-----------~~~~l~~~f~-~a~ 474 (976)
|+++...++|+|+||+|||++|..+|..+...+..+.|+....+ ......+|. ....+..++. .+.
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 46778889999999999999999999888776666666654321 111111110 1112222332 233
Q ss_pred hcCCcEEEEccccccCC
Q 002045 475 RNQPSIIFFDEIDGLAP 491 (976)
Q Consensus 475 ~~~p~VL~iDEid~L~~ 491 (976)
...+.+||||.+..+.+
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 56788999999998874
No 249
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.30 E-value=0.00015 Score=74.84 Aligned_cols=32 Identities=16% Similarity=0.031 Sum_probs=25.3
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeeecCC
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLGL 737 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~ 737 (976)
-++|+||||+|||+++..++. ..+.+++.++.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~ 53 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL-LSGKKVAYVDT 53 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-HHCSEEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHH-HcCCcEEEEEC
Confidence 478999999999999999988 34555655554
No 250
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=97.28 E-value=7.5e-05 Score=65.36 Aligned_cols=57 Identities=25% Similarity=0.251 Sum_probs=47.6
Q ss_pred ecCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHH-HHHHHHHHhH
Q 002045 830 VEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPKASELKAKV-EAEQHALRRL 899 (976)
Q Consensus 830 v~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~sg~s~aelk~~~-ea~~~alreL 899 (976)
-.+|+.++|.+||+.++. +.+...+++|..|+..|+|||| ++|+++| +|.+.++++.
T Consensus 8 ~~~Pd~~~R~~IL~~~l~----------~~~l~~dvdl~~LA~~T~G~SG---ADL~~l~~eAa~~alr~~ 65 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSR----------KMNLTRGINLRKIAELMPGASG---AEVKGVCTEAGMYALRER 65 (86)
T ss_dssp CCCCCHHHHHHHHHHHTT----------TSEECTTCCCHHHHHTCSSCCH---HHHHHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHHc----------CCCCCcccCHHHHHHHcCCCCH---HHHHHHHHHHHHHHHHHc
Confidence 468999999999999987 3344568999999999965555 9999999 9999998873
No 251
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.27 E-value=0.0027 Score=82.84 Aligned_cols=172 Identities=16% Similarity=0.128 Sum_probs=97.6
Q ss_pred ccccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHh---hcC-CcEEEEEecch--
Q 002045 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAAS---KAG-QKVSFYMRKGA-- 452 (976)
Q Consensus 379 ~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~---~~~-~~~~~~~~~~~-- 452 (976)
..++|.+..+++|.+.+... -...+-|.|+|+.|+|||+||+.+++... ... ..+-++.+...
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 192 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK 192 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH
T ss_pred ceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCc
Confidence 45899999999999987531 12345688999999999999999887642 112 23335554431
Q ss_pred -hHHhhh------Hh----------HHHHHHHHHHHHHHh--cCCcEEEEccccccCCCCCChhhhhHHHHHHHHHHHhh
Q 002045 453 -DVLSKW------VG----------EAERQLKLLFEEAQR--NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMD 513 (976)
Q Consensus 453 -~l~~~~------~g----------~~~~~l~~~f~~a~~--~~p~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld 513 (976)
.+.... ++ .....+...+..... ..+.+|+||+++... .+.
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--------------------~~~ 252 (1249)
T 3sfz_A 193 SGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--------------------VLK 252 (1249)
T ss_dssp HHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH--------------------HHT
T ss_pred hHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH--------------------HHH
Confidence 111100 00 011122222222222 237899999997431 122
Q ss_pred ccCCCCcEEEEecCCCccccchhhcCCCCCccccCCCC-CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCC
Q 002045 514 GLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPL-PGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYC 588 (976)
Q Consensus 514 ~~~~~~~vivI~atn~~~~ld~aL~r~gRf~~~i~~~~-P~~~er~~Il~~~l~~~~~~~~~~~l~~lA~~t~G~s 588 (976)
.+. .+..||.||....... .+. .....+.++. .+.++-.++|........... .....+|++.+.|+.
T Consensus 253 ~~~--~~~~ilvTtR~~~~~~-~~~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~-~~~~~~i~~~~~glP 321 (1249)
T 3sfz_A 253 AFD--NQCQILLTTRDKSVTD-SVM---GPKHVVPVESGLGREKGLEILSLFVNMKKEDL-PAEAHSIIKECKGSP 321 (1249)
T ss_dssp TTC--SSCEEEEEESSTTTTT-TCC---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTC-CTHHHHHHHHTTTCH
T ss_pred hhc--CCCEEEEEcCCHHHHH-hhc---CCceEEEecCCCCHHHHHHHHHHhhCCChhhC-cHHHHHHHHHhCCCH
Confidence 221 2334555665432221 111 1234567775 888999999987775433222 344578999999874
No 252
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=97.26 E-value=7.5e-05 Score=64.13 Aligned_cols=55 Identities=24% Similarity=0.237 Sum_probs=46.1
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHH-HHHHHHHHh
Q 002045 831 EKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPKASELKAKV-EAEQHALRR 898 (976)
Q Consensus 831 ~~P~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~sg~s~aelk~~~-ea~~~alre 898 (976)
++|+.++|.+||+.++. +.....++++..|+..++|++ +++|.++| +|.+.++++
T Consensus 1 plPd~~~R~~Il~~~l~----------~~~~~~~~dl~~la~~t~G~S---GADi~~l~~eA~~~a~~~ 56 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSR----------KMNLTRGINLRKIAELMPGAS---GAEVKGVCTEAGMYALRE 56 (78)
T ss_dssp CCCCHHHHHHHHHHHHT----------TSEECTTCCHHHHHHTCTTCC---HHHHHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHhc----------CCCCCCccCHHHHHHHcCCCC---HHHHHHHHHHHHHHHHHh
Confidence 58999999999999987 233456799999999995555 49999999 999998876
No 253
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.25 E-value=0.00076 Score=70.96 Aligned_cols=28 Identities=36% Similarity=0.421 Sum_probs=24.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHH
Q 002045 409 HITPPRGVLLCGPPGTGKTLIARALACA 436 (976)
Q Consensus 409 ~~~~~~~vLL~GppGtGKT~laralA~~ 436 (976)
|+++..-+.|+||+|+|||||++.++..
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 5677788999999999999999999843
No 254
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.25 E-value=0.00022 Score=74.91 Aligned_cols=74 Identities=11% Similarity=0.051 Sum_probs=45.1
Q ss_pred ceeeccCCCCcHhhHHHHHHHh--hc------CCCeeecCCccccc-----------CCC------------CCChHH--
Q 002045 705 RLLLCGSEGTGVDHLGPAILHE--LE------KFPVHSLGLPALLS-----------DPS------------AKTPEE-- 751 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~--l~------~~~~~~~~~~~l~~-----------~~~------------~g~~e~-- 751 (976)
-++|+||||+|||+++..++.. +. +..++.++....+. ++. ....+.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 105 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQT 105 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCHHHHH
Confidence 4889999999999999999984 21 23455554332100 000 001111
Q ss_pred -HHHHHHHHHHhcCCceEeccccchhHH
Q 002045 752 -ALVHIFGEARRTTPSILYIPQFNLWWE 778 (976)
Q Consensus 752 -~~~~~f~~a~~~~p~ilfiDEid~l~~ 778 (976)
.+..+...+....|.+|+|||+..+..
T Consensus 106 ~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 106 QLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp HHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred HHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 123344445556799999999998863
No 255
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.24 E-value=0.00042 Score=75.13 Aligned_cols=81 Identities=16% Similarity=0.267 Sum_probs=48.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhc--CCcEEEEEecchhHH----hhhHh------------HHHHHHHHHH
Q 002045 409 HITPPRGVLLCGPPGTGKTLIARALACAASKA--GQKVSFYMRKGADVL----SKWVG------------EAERQLKLLF 470 (976)
Q Consensus 409 ~~~~~~~vLL~GppGtGKT~laralA~~l~~~--~~~~~~~~~~~~~l~----~~~~g------------~~~~~l~~~f 470 (976)
|+++. -++|+||||+|||+|+..++..+... +..+.|+ ++..-+ ..-+| ..+...-.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyI--d~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~ 101 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFY--DSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMV 101 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEE--ESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEE--eccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHH
Confidence 45655 68999999999999998888777654 4344443 332211 11111 1122201122
Q ss_pred HH---HHhcCCcEEEEccccccCCC
Q 002045 471 EE---AQRNQPSIIFFDEIDGLAPV 492 (976)
Q Consensus 471 ~~---a~~~~p~VL~iDEid~L~~~ 492 (976)
+. +....|.+|+||-|..|.+.
T Consensus 102 ~~l~~i~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 102 NQLDAIERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp HHHHTCCTTCCEEEEEECSTTCBCC
T ss_pred HHHHHhhccCceEEEEecccccccc
Confidence 22 24567999999999999853
No 256
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.21 E-value=0.0014 Score=68.62 Aligned_cols=42 Identities=31% Similarity=0.440 Sum_probs=32.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEec
Q 002045 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (976)
Q Consensus 409 ~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~ 450 (976)
|+.+...++|+||||+|||+++..+|..+...+..+-++...
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 567778899999999999999998887765555556555443
No 257
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.21 E-value=0.0018 Score=65.47 Aligned_cols=76 Identities=17% Similarity=0.181 Sum_probs=51.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecch-------hHHhhhH-----------------hHHHHHHHH
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA-------DVLSKWV-----------------GEAERQLKL 468 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~-------~l~~~~~-----------------g~~~~~l~~ 468 (976)
...|++|+++|.|||++|-++|-.+...|+++.|+..... .++..+. .........
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 3579999999999999999999999888988888754332 2333321 011233344
Q ss_pred HHHHHHh----cCCcEEEEccccc
Q 002045 469 LFEEAQR----NQPSIIFFDEIDG 488 (976)
Q Consensus 469 ~f~~a~~----~~p~VL~iDEid~ 488 (976)
.+..+.. ....+|+|||+-.
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~ 131 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTY 131 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHH
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCc
Confidence 4444443 4478999999954
No 258
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.19 E-value=0.00042 Score=76.56 Aligned_cols=82 Identities=17% Similarity=0.249 Sum_probs=51.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhc------CCcEEEEEecch---hHHhhh---Hh----------------
Q 002045 409 HITPPRGVLLCGPPGTGKTLIARALACAASKA------GQKVSFYMRKGA---DVLSKW---VG---------------- 460 (976)
Q Consensus 409 ~~~~~~~vLL~GppGtGKT~laralA~~l~~~------~~~~~~~~~~~~---~l~~~~---~g---------------- 460 (976)
|+++..-++|+||||+|||+++..+|..+... +..+-|+....+ .-+..+ +|
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 56778889999999999999999999876433 345555554432 111100 00
Q ss_pred HHH---HHHHHHHHHHHh-cCCcEEEEccccccC
Q 002045 461 EAE---RQLKLLFEEAQR-NQPSIIFFDEIDGLA 490 (976)
Q Consensus 461 ~~~---~~l~~~f~~a~~-~~p~VL~iDEid~L~ 490 (976)
..+ ..+..+...+.. ..+.+|+||.+..+.
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~ 216 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHF 216 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHh
Confidence 011 123334444445 678899999999886
No 259
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.17 E-value=0.0002 Score=76.06 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=22.2
Q ss_pred CceeeccCCCCcHhhHHHHHHHhh
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHEL 727 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l 727 (976)
.++||+||||||||++|.+||+.+
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhh
Confidence 479999999999999999999974
No 260
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.17 E-value=0.0006 Score=76.00 Aligned_cols=83 Identities=20% Similarity=0.191 Sum_probs=51.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhh------cCCcEEEEEecch---hHHhhh---H-----------------
Q 002045 409 HITPPRGVLLCGPPGTGKTLIARALACAASK------AGQKVSFYMRKGA---DVLSKW---V----------------- 459 (976)
Q Consensus 409 ~~~~~~~vLL~GppGtGKT~laralA~~l~~------~~~~~~~~~~~~~---~l~~~~---~----------------- 459 (976)
|+++..-++|+||||+|||+++..+|..+.. .+..+.|+..... .-+..+ +
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 5677788999999999999999999987433 2334555544431 111110 0
Q ss_pred --hHHHHHHHHHHHHHHh--cCCcEEEEccccccCC
Q 002045 460 --GEAERQLKLLFEEAQR--NQPSIIFFDEIDGLAP 491 (976)
Q Consensus 460 --g~~~~~l~~~f~~a~~--~~p~VL~iDEid~L~~ 491 (976)
.+....+..+...+.. ..+.+|+||.+..+..
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 1111222233344445 6688999999998863
No 261
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.17 E-value=0.00025 Score=73.14 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=29.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEe
Q 002045 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR 449 (976)
Q Consensus 409 ~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~ 449 (976)
|+++..-++|+||||+|||+++..+|. ..+..+.|+..
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~ 53 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDT 53 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEES
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEEC
Confidence 467788899999999999999999998 23444555543
No 262
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.14 E-value=0.00071 Score=75.36 Aligned_cols=102 Identities=12% Similarity=0.081 Sum_probs=60.3
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCccccc------------C---CCCCChHHHHHHHHHHHHhcCCce
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLS------------D---PSAKTPEEALVHIFGEARRTTPSI 767 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~------------~---~~~g~~e~~~~~~f~~a~~~~p~i 767 (976)
-++|+||||+|||+|+..++..+. +..++.++....+. . ......+..+..+...++...|.+
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dl 142 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVDL 142 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCCe
Confidence 378999999999999999988642 34555555433211 0 001233444444444455578999
Q ss_pred EeccccchhHHH-------------HHHHHHHHHHHHHhhCCCCCCEEEEEe
Q 002045 768 LYIPQFNLWWEN-------------AHEQLRAVLLTLLEELPSHLPILLLGS 806 (976)
Q Consensus 768 lfiDEid~l~~~-------------~~~~~~~~l~~ll~~~~~~~~v~vi~t 806 (976)
|+||.+..+.+. .+.+.+..++..|..+-...++.||.+
T Consensus 143 vVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i 194 (356)
T 3hr8_A 143 IVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT 194 (356)
T ss_dssp EEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred EEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 999999988741 123444455555555533344545544
No 263
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.13 E-value=0.00051 Score=69.36 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=26.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEE
Q 002045 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (976)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (976)
.-++++||+|+|||+++..++..+...+..+.++
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4578999999999999987777776556555443
No 264
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.08 E-value=0.0018 Score=73.97 Aligned_cols=78 Identities=24% Similarity=0.198 Sum_probs=54.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhH-----Hhhh-------------HhHHHHHHHHHHHHH
Q 002045 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV-----LSKW-------------VGEAERQLKLLFEEA 473 (976)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l-----~~~~-------------~g~~~~~l~~~f~~a 473 (976)
+|.-|+|+|++|+||||++..||..+...+..+.++..+.-.. +..| .......+...+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999999988887777665443100 0000 112334455667777
Q ss_pred HhcCCcEEEEcccccc
Q 002045 474 QRNQPSIIFFDEIDGL 489 (976)
Q Consensus 474 ~~~~p~VL~iDEid~L 489 (976)
....+.+||||..-.+
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7767889999987433
No 265
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.07 E-value=0.00036 Score=83.10 Aligned_cols=103 Identities=26% Similarity=0.432 Sum_probs=58.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh--HHhhhHhHHHHHHHHHHHHH---------HhcCCcEE
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD--VLSKWVGEAERQLKLLFEEA---------QRNQPSII 481 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~--l~~~~~g~~~~~l~~~f~~a---------~~~~p~VL 481 (976)
...++|+||||||||+++.+++..+...+..+.+...++.. .+....+.....+..++... ......+|
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvl 283 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLL 283 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEE
Confidence 35799999999999999999999988777666655433321 11111110000111121100 01124699
Q ss_pred EEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCC
Q 002045 482 FFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (976)
Q Consensus 482 ~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~ 529 (976)
||||+..+. ...+..|+..+ .....+++++-.+.
T Consensus 284 IIDEasml~-----------~~~~~~Ll~~~---~~~~~lilvGD~~Q 317 (574)
T 3e1s_A 284 IVDEVSMMG-----------DALMLSLLAAV---PPGARVLLVGDTDQ 317 (574)
T ss_dssp EECCGGGCC-----------HHHHHHHHTTS---CTTCEEEEEECTTS
T ss_pred EEcCccCCC-----------HHHHHHHHHhC---cCCCEEEEEecccc
Confidence 999998763 33444454433 34456777776554
No 266
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.00 E-value=0.00096 Score=70.19 Aligned_cols=20 Identities=30% Similarity=0.602 Sum_probs=18.6
Q ss_pred ceeeccCCCCcHhhHHHHHH
Q 002045 705 RLLLCGSEGTGVDHLGPAIL 724 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia 724 (976)
-++|+||+|+|||||+++|+
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 48899999999999999998
No 267
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=96.99 E-value=9.3e-05 Score=65.14 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHH-HHHHHHHHh
Q 002045 834 STEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPKASELKAKV-EAEQHALRR 898 (976)
Q Consensus 834 ~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~sg~s~aelk~~~-ea~~~alre 898 (976)
+.++|.+||+.++. +.+...++++..|+..|+|++| ++|.++| +|.+.++++
T Consensus 2 d~~~R~~Il~~~~~----------~~~~~~dvdl~~lA~~t~G~SG---ADl~~l~~eAa~~a~r~ 54 (88)
T 3vlf_B 2 DLEGRANIFRIHSK----------SMSVERGIRWELISRLCPNSTG---AELRSVCTEAGMFAIRA 54 (88)
T ss_dssp CSSHHHHHHHHHHT----------TSCBCSCCCHHHHHHTCSSCCH---HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHC----------CCCCCCccCHHHHHHHcCCCcH---HHHHHHHHHHHHHHHHh
Confidence 56789999999987 3455678999999999965555 9999999 899999987
No 268
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.97 E-value=0.0012 Score=74.79 Aligned_cols=29 Identities=24% Similarity=0.247 Sum_probs=24.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHH
Q 002045 409 HITPPRGVLLCGPPGTGKTLIARALACAA 437 (976)
Q Consensus 409 ~~~~~~~vLL~GppGtGKT~laralA~~l 437 (976)
|+.+..-++|+||||+|||+|++.+|-.+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHh
Confidence 67788899999999999999999876443
No 269
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.97 E-value=0.0014 Score=75.81 Aligned_cols=42 Identities=17% Similarity=0.301 Sum_probs=34.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhh-cCCcEEEEEec
Q 002045 409 HITPPRGVLLCGPPGTGKTLIARALACAASK-AGQKVSFYMRK 450 (976)
Q Consensus 409 ~~~~~~~vLL~GppGtGKT~laralA~~l~~-~~~~~~~~~~~ 450 (976)
|+.+..-++|.|+||+|||+++..+|..+.. .+..+.|+...
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 6788889999999999999999999988765 45567776644
No 270
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.88 E-value=0.00072 Score=76.03 Aligned_cols=98 Identities=12% Similarity=-0.019 Sum_probs=57.5
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCChHHHHHHHHHHHHhcCCceEeccccchhHHH----
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN---- 779 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~~---- 779 (976)
..++|+||||||||+++++|+..+.+ .++.+..+.. .....+..+ ....++|+|+++.+...
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~~g-~~~~~~~~~~-------~~~~~lg~~------~q~~~~l~dd~~~~~~~~r~l 235 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELCGG-KALNVNLPLD-------RLNFELGVA------IDQFLVVFEDVKGTGGESRDL 235 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCC-EEECCSSCTT-------THHHHHGGG------TTCSCEEETTCCCSTTTTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCC-cEEEEeccch-------hHHHHHHHh------cchhHHHHHHHHHHHHHHhhc
Confidence 46899999999999999999998743 4443332210 001112212 23467899999987641
Q ss_pred ---HHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcCCCCCCcCC
Q 002045 780 ---AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPL 824 (976)
Q Consensus 780 ---~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~~~~~~~~~ 824 (976)
........+...+++ .+.|+++||++ +.+ + +.++++
T Consensus 236 ~~~~~~~~~~~l~~~ldG-----~v~v~~~tn~~-~~l-~--alf~pg 274 (377)
T 1svm_A 236 PSGQGINNLDNLRDYLDG-----SVKVNLEKKHL-NKR-T--QIFPPG 274 (377)
T ss_dssp CCCSHHHHHHTTHHHHHC-----SSCEEECCSSS-CCE-E--ECCCCE
T ss_pred cccCcchHHHHHHHHhcC-----CCeEeeccCch-hhH-H--HhhcCc
Confidence 010012334445543 35577889998 666 3 444443
No 271
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.87 E-value=0.00074 Score=73.99 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=32.9
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCC
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAK 747 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g 747 (976)
.++|+||+|||||++|..||+.+ +..++.++.-.+..+..+|
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l-~~~iis~Ds~qvy~~~~ig 48 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL-PCELISVDSALIYRGMDIG 48 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS-CEEEEEECTTTTBTTCCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-CCcEEeccchhhhcCCCcc
Confidence 58999999999999999999998 5678887755444444344
No 272
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.87 E-value=0.0017 Score=64.54 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=23.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHh
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (976)
+..|+|+|+||+||||++++|+..++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35699999999999999999999875
No 273
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.85 E-value=0.0015 Score=73.23 Aligned_cols=74 Identities=15% Similarity=0.061 Sum_probs=46.2
Q ss_pred ceeeccCCCCcHhhHHHHHHHhh--cCCCeeecCCcccccCC---------------CCCChHHHHHHHHHHHHhcCCce
Q 002045 705 RLLLCGSEGTGVDHLGPAILHEL--EKFPVHSLGLPALLSDP---------------SAKTPEEALVHIFGEARRTTPSI 767 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l--~~~~~~~~~~~~l~~~~---------------~~g~~e~~~~~~f~~a~~~~p~i 767 (976)
-++|+|+||+|||++|..++..+ .+.+++.++...-+... -....+..+..+...++...+++
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~l 155 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDV 155 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSE
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCCE
Confidence 48899999999999999888763 23455555543211100 01122333333333444567899
Q ss_pred EeccccchhHH
Q 002045 768 LYIPQFNLWWE 778 (976)
Q Consensus 768 lfiDEid~l~~ 778 (976)
|+||.+..|..
T Consensus 156 VVIDsl~~l~~ 166 (366)
T 1xp8_A 156 VVVDSVAALTP 166 (366)
T ss_dssp EEEECTTTCCC
T ss_pred EEEeChHHhcc
Confidence 99999999873
No 274
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.82 E-value=0.0042 Score=68.22 Aligned_cols=42 Identities=24% Similarity=0.171 Sum_probs=34.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEec
Q 002045 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (976)
Q Consensus 409 ~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~ 450 (976)
|+.+..-++|.|+||+|||+++..+|..+...+..+-|+...
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 578888999999999999999999998876666566666543
No 275
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.82 E-value=0.0013 Score=68.29 Aligned_cols=29 Identities=31% Similarity=0.332 Sum_probs=25.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHH
Q 002045 409 HITPPRGVLLCGPPGTGKTLIARALACAA 437 (976)
Q Consensus 409 ~~~~~~~vLL~GppGtGKT~laralA~~l 437 (976)
|+.+..-+.|+||+|+|||||++.++..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56777789999999999999999999864
No 276
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.81 E-value=0.0012 Score=73.74 Aligned_cols=73 Identities=15% Similarity=0.052 Sum_probs=45.7
Q ss_pred ceeeccCCCCcHhhHHHHHHHhh--cCCCeeecCCccccc-------CC--------CCCChHHHHHHHHHHHHhcCCce
Q 002045 705 RLLLCGSEGTGVDHLGPAILHEL--EKFPVHSLGLPALLS-------DP--------SAKTPEEALVHIFGEARRTTPSI 767 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l--~~~~~~~~~~~~l~~-------~~--------~~g~~e~~~~~~f~~a~~~~p~i 767 (976)
-++|+|+||+|||+||..++..+ .+..++.++...-+. ++ .....++.+..+...++...|.+
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~l 142 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDI 142 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCE
Confidence 48899999999999999988653 233455444332111 00 00122333333444455667999
Q ss_pred EeccccchhH
Q 002045 768 LYIPQFNLWW 777 (976)
Q Consensus 768 lfiDEid~l~ 777 (976)
|+||++..+.
T Consensus 143 IVIDsl~~l~ 152 (349)
T 2zr9_A 143 IVIDSVAALV 152 (349)
T ss_dssp EEEECGGGCC
T ss_pred EEEcChHhhc
Confidence 9999999987
No 277
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.80 E-value=0.0029 Score=74.27 Aligned_cols=138 Identities=19% Similarity=0.276 Sum_probs=82.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcC--CcEEEEEecchhH-Hhhh------------------------HhHHHHH
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAASKAG--QKVSFYMRKGADV-LSKW------------------------VGEAERQ 465 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~--~~~~~~~~~~~~l-~~~~------------------------~g~~~~~ 465 (976)
..|+|+.|.+|+|||++++.+...+.... ..+.|+.++.... ++.| +.+.+.+
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg~eLs~~~~lPHl~~~Vvtd~~~a~~~L~~lv~EMerR 293 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKMLELSIYEGIPHLLCPVVTDMKEAANALRWSVAEMERR 293 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSSHHHHTTTTCTTBSSSCBCCHHHHHHHHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCChhhhHhhcCCCcccceeeCCHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999877664322 3577777765420 1111 1111111
Q ss_pred HHHHHHHH-----------H-h--------------------------cC-CcEEEEccccccCCCCCChhhhhHHHHHH
Q 002045 466 LKLLFEEA-----------Q-R--------------------------NQ-PSIIFFDEIDGLAPVRSSKQEQIHNSIVS 506 (976)
Q Consensus 466 l~~~f~~a-----------~-~--------------------------~~-p~VL~iDEid~L~~~r~~~~~~~~~~~~~ 506 (976)
.+ +|... . . .- +.+|||||++.|+.... ..+..
T Consensus 294 ~~-ll~~~gvrni~~Yn~~~~~~~~~G~~~~dp~~~~~~~~~~~~~~~~lP~ivvVIDE~~~L~~~~~-------~~~~~ 365 (574)
T 2iut_A 294 YR-LMAAMGVRNLAGFNRKVKDAEEAGTPLTDPLFRRESPDDEPPQLSTLPTIVVVVDEFADMMMIVG-------KKVEE 365 (574)
T ss_dssp HH-HHHHHTCSSHHHHHHHHHHHHHTTCCCBCTTCCCCSTTCCCCBCCCCCEEEEEESCCTTHHHHTC-------HHHHH
T ss_pred HH-HHHHcCCccHHHHHHHHHHHhhcccccccccccccccccccccccCCCcEEEEEeCHHHHhhhhh-------HHHHH
Confidence 11 11110 0 0 11 25899999998863211 12222
Q ss_pred HHHHHhhccCCCCcEEEEecCCCcc--ccchhhcCCCCCccccCCCCCCHHHHHHHH
Q 002045 507 TLLALMDGLDSRGQVVLIGATNRVD--AIDGALRRPGRFDREFNFPLPGCEARAEIL 561 (976)
Q Consensus 507 ~Ll~~ld~~~~~~~vivI~atn~~~--~ld~aL~r~gRf~~~i~~~~P~~~er~~Il 561 (976)
.|..++.. ...-++.+|.+|.+|. .|+..++. -|...|.|...+..+...||
T Consensus 366 ~L~~Iar~-GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~Dsr~IL 419 (574)
T 2iut_A 366 LIARIAQK-ARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKIDSRTIL 419 (574)
T ss_dssp HHHHHHHH-CTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHHHHHHH
T ss_pred HHHHHHHH-HhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHHHHHhc
Confidence 23233322 3345688888888877 68887776 67778888888888877776
No 278
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.79 E-value=0.00061 Score=72.79 Aligned_cols=77 Identities=21% Similarity=0.307 Sum_probs=46.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHHhhc-CCcEEEEEecchhH-------Hh-hhHhHHHHHHHHHHHHHHhcCCcE
Q 002045 410 ITPPRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYMRKGADV-------LS-KWVGEAERQLKLLFEEAQRNQPSI 480 (976)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~~~~~~l-------~~-~~~g~~~~~l~~~f~~a~~~~p~V 480 (976)
+.+...++|+||+|+||||++++++..+... ...+.+.......+ +. ..+|.....++..+..+....|.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~i 101 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 101 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSE
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCE
Confidence 3566679999999999999999999987543 22333222111000 00 001101112345566666678999
Q ss_pred EEEccc
Q 002045 481 IFFDEI 486 (976)
Q Consensus 481 L~iDEi 486 (976)
|++||.
T Consensus 102 lllDEp 107 (261)
T 2eyu_A 102 IFVGEM 107 (261)
T ss_dssp EEESCC
T ss_pred EEeCCC
Confidence 999998
No 279
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.79 E-value=0.0011 Score=73.95 Aligned_cols=74 Identities=22% Similarity=0.302 Sum_probs=44.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhc-CCcEEEEEecchhHH--------h-hhHhHHHHHHHHHHHHHHhcCCcEE
Q 002045 412 PPRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYMRKGADVL--------S-KWVGEAERQLKLLFEEAQRNQPSII 481 (976)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~~~~~~l~--------~-~~~g~~~~~l~~~f~~a~~~~p~VL 481 (976)
+...++|+||+|+||||++++++..+... +..+-.+. +..++. . ..++.....+...+..+....|.||
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e-d~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvi 200 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE-DPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDII 200 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE-SSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc-CcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEE
Confidence 34479999999999999999999988654 22222211 111110 0 0011111122335666777889999
Q ss_pred EEccc
Q 002045 482 FFDEI 486 (976)
Q Consensus 482 ~iDEi 486 (976)
++||+
T Consensus 201 llDEp 205 (356)
T 3jvv_A 201 LVGEM 205 (356)
T ss_dssp EESCC
T ss_pred ecCCC
Confidence 99998
No 280
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.78 E-value=0.0057 Score=69.81 Aligned_cols=78 Identities=27% Similarity=0.236 Sum_probs=51.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhH-----Hh---hhHh----------HHHHHHHHHHHHH
Q 002045 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV-----LS---KWVG----------EAERQLKLLFEEA 473 (976)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l-----~~---~~~g----------~~~~~l~~~f~~a 473 (976)
++.-++|+||+|+||||++..||..+...+..+.++..+.... +. ...| .....+...+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 4678899999999999999999999988887777766543110 00 0000 1112233444555
Q ss_pred HhcCCcEEEEcccccc
Q 002045 474 QRNQPSIIFFDEIDGL 489 (976)
Q Consensus 474 ~~~~p~VL~iDEid~L 489 (976)
....+.+|+||....+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 5456789999987543
No 281
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.77 E-value=0.0023 Score=66.49 Aligned_cols=76 Identities=17% Similarity=0.122 Sum_probs=47.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecch-----hHHhhhHhHH-----HHHHHHHHHHHHh----cCC
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA-----DVLSKWVGEA-----ERQLKLLFEEAQR----NQP 478 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~-----~l~~~~~g~~-----~~~l~~~f~~a~~----~~p 478 (976)
..-++++||+|+||||++..++..+...+..+-++..... .+.+. .|-. ......++..+.. ..+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~ 90 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDET 90 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 4567888999999999999999998877766665532211 11111 1100 0011234444443 347
Q ss_pred cEEEEcccccc
Q 002045 479 SIIFFDEIDGL 489 (976)
Q Consensus 479 ~VL~iDEid~L 489 (976)
.+|+|||+..|
T Consensus 91 dvViIDEaQ~l 101 (223)
T 2b8t_A 91 KVIGIDEVQFF 101 (223)
T ss_dssp CEEEECSGGGS
T ss_pred CEEEEecCccC
Confidence 89999999876
No 282
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.77 E-value=0.0034 Score=72.46 Aligned_cols=42 Identities=26% Similarity=0.357 Sum_probs=34.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhh-cCCcEEEEEec
Q 002045 409 HITPPRGVLLCGPPGTGKTLIARALACAASK-AGQKVSFYMRK 450 (976)
Q Consensus 409 ~~~~~~~vLL~GppGtGKT~laralA~~l~~-~~~~~~~~~~~ 450 (976)
|+.+..-++|+|+||+|||+++..+|..+.. .+..+-|+...
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 6788888999999999999999999988765 35566666554
No 283
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.72 E-value=0.0015 Score=72.11 Aligned_cols=74 Identities=7% Similarity=0.065 Sum_probs=45.8
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc--------CCCeeecCCcccc---------cCC------------C--CCChH---
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE--------KFPVHSLGLPALL---------SDP------------S--AKTPE--- 750 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~--------~~~~~~~~~~~l~---------~~~------------~--~g~~e--- 750 (976)
-++|+|+||+|||++|..++.... +.+++.++....+ ..+ + ....+
T Consensus 109 i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~ 188 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQI 188 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHH
T ss_pred EEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCHHHHH
Confidence 488999999999999999987631 2344555443211 000 0 00112
Q ss_pred HHHHHHHHHHHh-cCCceEeccccchhHH
Q 002045 751 EALVHIFGEARR-TTPSILYIPQFNLWWE 778 (976)
Q Consensus 751 ~~~~~~f~~a~~-~~p~ilfiDEid~l~~ 778 (976)
..+..+...++. ..+.+|+||.+..+..
T Consensus 189 ~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 189 AIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred HHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 123344445555 6789999999999874
No 284
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.71 E-value=0.00098 Score=69.15 Aligned_cols=102 Identities=16% Similarity=0.172 Sum_probs=55.1
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcc----c---------------------ccC--------CC--CC
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPA----L---------------------LSD--------PS--AK 747 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~----l---------------------~~~--------~~--~g 747 (976)
-++|+||||+|||++++.++..+. +..++.++... + +.. +. ..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQWSLVNL 104 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CTTBCSSC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCceeeecCC
Confidence 478999999999999999986421 22333332110 0 000 00 00
Q ss_pred ChHHHHHHHHHHHHhcCCc--eEeccccchhHHH---HHHHHHHHHHHHHhhCCCCCCEEEEEecCCC
Q 002045 748 TPEEALVHIFGEARRTTPS--ILYIPQFNLWWEN---AHEQLRAVLLTLLEELPSHLPILLLGSSSVP 810 (976)
Q Consensus 748 ~~e~~~~~~f~~a~~~~p~--ilfiDEid~l~~~---~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~ 810 (976)
+.+.....+...+....|. +|+|||+..+... ....+...|..+... .++.||.++...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~----~~~~vi~~~h~~ 168 (235)
T 2w0m_A 105 TPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNK----WNFTIYATSQYA 168 (235)
T ss_dssp CHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHH----TTEEEEEEEC--
T ss_pred CHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHh----CCCeEEEEeccC
Confidence 2233344455556667899 9999999987622 223444444443322 345555555533
No 285
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=96.69 E-value=0.00025 Score=61.58 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHH-HHHHHHHHh
Q 002045 834 STEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPKASELKAKV-EAEQHALRR 898 (976)
Q Consensus 834 ~~~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~sg~s~aelk~~~-ea~~~alre 898 (976)
+.++|.+||+.++. +.+...++++..|+..++|++| ++|.++| +|.+.++++
T Consensus 2 d~~~R~~Il~~~l~----------~~~~~~~vdl~~la~~t~G~SG---ADi~~l~~eA~~~a~~~ 54 (83)
T 3aji_B 2 DRRQKRLIFSTITS----------KMNLSEEVDLEDYVARPDKISG---ADINSICQESGMLAVRE 54 (83)
T ss_dssp CHHHHHHHHHHHHT----------TSCBCTTCCTHHHHTSSCCCCH---HHHHHHHHHHHHGGGTS
T ss_pred CHHHHHHHHHHHhC----------CCCCCcccCHHHHHHHcCCCCH---HHHHHHHHHHHHHHHHh
Confidence 67899999999987 3444568999999999955555 9999999 888888765
No 286
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.69 E-value=0.0016 Score=67.44 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=20.1
Q ss_pred ceeeccCCCCcHhhHHHHHHHh
Q 002045 705 RLLLCGSEGTGVDHLGPAILHE 726 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~ 726 (976)
-+.|+||+|+|||+|+++|+..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999974
No 287
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.68 E-value=0.0078 Score=64.70 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=26.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhh
Q 002045 409 HITPPRGVLLCGPPGTGKTLIARALACAASK 439 (976)
Q Consensus 409 ~~~~~~~vLL~GppGtGKT~laralA~~l~~ 439 (976)
|+....-++|+||+|+|||+|+..++..+..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4566778999999999999999999986653
No 288
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.67 E-value=0.0042 Score=72.30 Aligned_cols=74 Identities=20% Similarity=0.314 Sum_probs=45.3
Q ss_pred cEEEEccccccCCCCCChhhhhHHHHHHHHHHHhhccCCCCcEEEEecCCCcc--ccchhhcCCCCCccccCCCCCCHHH
Q 002045 479 SIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVD--AIDGALRRPGRFDREFNFPLPGCEA 556 (976)
Q Consensus 479 ~VL~iDEid~L~~~r~~~~~~~~~~~~~~Ll~~ld~~~~~~~vivI~atn~~~--~ld~aL~r~gRf~~~i~~~~P~~~e 556 (976)
.+|+|||+..++.. ....+. .++..+-.....-.+.+|.+|.+|. .++..++. .|...|.|...+..+
T Consensus 299 ivlvIDE~~~ll~~-------~~~~~~-~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~d 368 (512)
T 2ius_A 299 IVVLVDEFADLMMT-------VGKKVE-ELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKID 368 (512)
T ss_dssp EEEEEETHHHHHHH-------HHHHHH-HHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHHH
T ss_pred EEEEEeCHHHHHhh-------hhHHHH-HHHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCHHH
Confidence 38999999877521 111222 2222222112233577777887776 47777766 577778888888888
Q ss_pred HHHHHH
Q 002045 557 RAEILD 562 (976)
Q Consensus 557 r~~Il~ 562 (976)
...|+.
T Consensus 369 sr~ilg 374 (512)
T 2ius_A 369 SRTILD 374 (512)
T ss_dssp HHHHHS
T ss_pred HHHhcC
Confidence 877763
No 289
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.67 E-value=0.0026 Score=65.79 Aligned_cols=39 Identities=28% Similarity=0.278 Sum_probs=34.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecc
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~ 451 (976)
..+|++.|+||||||+++-.+|..+...|+.+.+..++.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 357999999999999999999999998898888877764
No 290
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.66 E-value=0.0078 Score=65.63 Aligned_cols=40 Identities=30% Similarity=0.395 Sum_probs=32.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEec
Q 002045 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (976)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~ 450 (976)
.++.-++|+||+|+||||++..+|..+...+..+.++..+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D 141 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 141 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 4567899999999999999999999987777666665543
No 291
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=96.65 E-value=0.00061 Score=58.96 Aligned_cols=50 Identities=22% Similarity=0.235 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHH-HHHHHHHHh
Q 002045 836 EDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPKASELKAKV-EAEQHALRR 898 (976)
Q Consensus 836 ~er~~i~~~~l~~~~~~~~~~~~~~~~~~~dl~~La~~~~~~sg~s~aelk~~~-ea~~~alre 898 (976)
++|.+||+.++.+ .+...+++|..|+..++|+| +++|.++| +|.+.++++
T Consensus 1 ~~R~~Il~~~l~~----------~~~~~~vdl~~lA~~t~G~S---GADi~~l~~eAa~~ai~~ 51 (82)
T 2dzn_B 1 MERRLIFGTIASK----------MSLAPEADLDSLIIRNDSLS---GAVIAAIMQEAGLRAVRK 51 (82)
T ss_dssp -----------------------CEECTTCCSTTTTTSSCCCC---HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcC----------CCCCCcCCHHHHHHHcCCCC---HHHHHHHHHHHHHHHHHh
Confidence 4789999999873 33456799999999996555 49999999 999999987
No 292
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.61 E-value=0.0075 Score=65.37 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=33.1
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-CCcEEEEEe
Q 002045 408 YHITPPRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYMR 449 (976)
Q Consensus 408 ~~~~~~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~~ 449 (976)
+++.+..-++|.||||+|||+|++.+|..+... +..+.++..
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 356778889999999999999999999887654 545555543
No 293
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.015 Score=74.40 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=21.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcC
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAASKAG 441 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~ 441 (976)
..++|++||+|+|||+++-..+......+
T Consensus 199 g~dvLV~ApTGSGKTlva~l~i~~~l~~g 227 (1108)
T 3l9o_A 199 GESVLVSAHTSAGKTVVAEYAIAQSLKNK 227 (1108)
T ss_dssp TCCEEEECCSSSHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 36799999999999998765554443334
No 294
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.55 E-value=0.001 Score=66.60 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=27.8
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecC
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLG 736 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~ 736 (976)
+.++|+|+||||||++|+.+|..+ +.+++..+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l-~~~~i~~d 37 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT-KRILYDSD 37 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH-CCCEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh-CCCEEECh
Confidence 468999999999999999999998 67777554
No 295
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.54 E-value=0.0018 Score=71.33 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=25.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHH
Q 002045 409 HITPPRGVLLCGPPGTGKTLIARALACAA 437 (976)
Q Consensus 409 ~~~~~~~vLL~GppGtGKT~laralA~~l 437 (976)
|+++..-++|+||||+|||++|..+|..+
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56777889999999999999999998764
No 296
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.54 E-value=0.011 Score=69.49 Aligned_cols=75 Identities=12% Similarity=0.149 Sum_probs=49.2
Q ss_pred ceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCc-ccCcCCCCCCcCCccEEEecCCCHHHHHHHHH
Q 002045 766 SILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPL-AEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLG 843 (976)
Q Consensus 766 ~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~-~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~~ 843 (976)
.+|+|||+..|+......+...|..++..-. ..+|.||.+|.+|. +.|+..+...+. ..|.+...+..+-..||-
T Consensus 345 ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GR-a~GIhLIlaTQRPs~d~I~~~Iran~~--~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 345 IVVVVDEFADMMMIVGKKVEELIARIAQKAR-AAGIHLILATQRPSVDVITGLIKANIP--TRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp EEEEESCCTTHHHHTCHHHHHHHHHHHHHCT-TTTEEEEEEESCCCTTTSCHHHHHTCC--EEEEECCSCHHHHHHHHS
T ss_pred EEEEEeCHHHHhhhhhHHHHHHHHHHHHHHh-hCCeEEEEEecCcccccccHHHHhhhc--cEEEEEcCCHHHHHHhcC
Confidence 5899999999987655555555655555443 55788888888882 145442233333 455578888887766663
No 297
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.53 E-value=0.0022 Score=71.53 Aligned_cols=95 Identities=18% Similarity=0.256 Sum_probs=55.5
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc---CCCeeecCCc-cc--------ccCCCCCChHHHHHHHHHHHHhcCCceEeccc
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE---KFPVHSLGLP-AL--------LSDPSAKTPEEALVHIFGEARRTTPSILYIPQ 772 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~---~~~~~~~~~~-~l--------~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDE 772 (976)
-++|+||+|+||||+.++++..+. +..++.+.-+ ++ +....++.....+..++..|-...|.||++||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 388999999999999999988653 2233332211 11 11101121112355577778889999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCC
Q 002045 773 FNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVP 810 (976)
Q Consensus 773 id~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~ 810 (976)
+-. ......+..+.. .+..||.|+...
T Consensus 205 p~d------~e~~~~~~~~~~-----~G~~vl~t~H~~ 231 (356)
T 3jvv_A 205 MRD------LETIRLALTAAE-----TGHLVFGTLHTT 231 (356)
T ss_dssp CCS------HHHHHHHHHHHH-----TTCEEEEEESCS
T ss_pred CCC------HHHHHHHHHHHh-----cCCEEEEEEccC
Confidence 962 222333333322 234467777655
No 298
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.53 E-value=0.0031 Score=70.33 Aligned_cols=74 Identities=14% Similarity=0.114 Sum_probs=45.6
Q ss_pred ceeeccCCCCcHhhHHHHHHHhh--cCCCeeecCCcccccC------------CC--CCChHHHHHHHH-HHHHhcCCce
Q 002045 705 RLLLCGSEGTGVDHLGPAILHEL--EKFPVHSLGLPALLSD------------PS--AKTPEEALVHIF-GEARRTTPSI 767 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l--~~~~~~~~~~~~l~~~------------~~--~g~~e~~~~~~f-~~a~~~~p~i 767 (976)
-++|+|+||+|||++|..++..+ .+.+++.++....+.. +. .-.+.+.+..++ ..++...+.+
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~l 144 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 144 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCCE
Confidence 48899999999999999988753 2345666654221110 00 001122333333 3344567899
Q ss_pred EeccccchhHH
Q 002045 768 LYIPQFNLWWE 778 (976)
Q Consensus 768 lfiDEid~l~~ 778 (976)
|+||.+..+..
T Consensus 145 VVIDsl~~l~~ 155 (356)
T 1u94_A 145 IVVDSVAALTP 155 (356)
T ss_dssp EEEECGGGCCC
T ss_pred EEEcCHHHhcc
Confidence 99999999873
No 299
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.51 E-value=0.0021 Score=72.89 Aligned_cols=105 Identities=10% Similarity=0.049 Sum_probs=55.3
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc--------CCCeeecCCccccc-----------CC---------CC---CCh---H
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE--------KFPVHSLGLPALLS-----------DP---------SA---KTP---E 750 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~--------~~~~~~~~~~~l~~-----------~~---------~~---g~~---e 750 (976)
-++|+||||||||+|++.++.... +..++.++....+. ++ .. -.. .
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~~~~~ 259 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQL 259 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCChHHHH
Confidence 488999999999999997763321 12255554332110 00 00 001 1
Q ss_pred HHHHHHHHHHHhcCCceEeccccchhHHH-H------H--HHHHHHHHHHHhhCCCCCCEEEEEecCC
Q 002045 751 EALVHIFGEARRTTPSILYIPQFNLWWEN-A------H--EQLRAVLLTLLEELPSHLPILLLGSSSV 809 (976)
Q Consensus 751 ~~~~~~f~~a~~~~p~ilfiDEid~l~~~-~------~--~~~~~~l~~ll~~~~~~~~v~vi~ttn~ 809 (976)
..+..+...+....|.+|+||++-.++.. . . .+....++..|..+-...++.||.++..
T Consensus 260 ~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 260 RLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp HHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 12333444445567999999999987632 1 1 2223445555555433334445555543
No 300
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=96.50 E-value=0.00027 Score=80.53 Aligned_cols=96 Identities=13% Similarity=-0.049 Sum_probs=54.3
Q ss_pred ceeeccCCCCcHhhHHHHH-HHhhcCCCeeecCCc---ccccCCC--CCChHHHHHHHHHHHHhcCCceEeccccchhHH
Q 002045 705 RLLLCGSEGTGVDHLGPAI-LHELEKFPVHSLGLP---ALLSDPS--AKTPEEALVHIFGEARRTTPSILYIPQFNLWWE 778 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~ai-a~~l~~~~~~~~~~~---~l~~~~~--~g~~e~~~~~~f~~a~~~~p~ilfiDEid~l~~ 778 (976)
++||.|+||| ||++|+++ ++.+....|....++ .|..... .| .. .-...+..| ...|||||||+.+..
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~~tG-~~-~~~G~l~LA---dgGvl~lDEIn~~~~ 314 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKEDRG-WA-LRAGAAVLA---DGGILAVDHLEGAPE 314 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEESSS-EE-EEECHHHHT---TTSEEEEECCTTCCH
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEcCCC-cc-cCCCeeEEc---CCCeeehHhhhhCCH
Confidence 7999999999 99999999 776533222211111 0110000 01 00 001122333 247999999999776
Q ss_pred HHHHHHHHHHHHHHhhC----C---CCCCEEEEEecCCC
Q 002045 779 NAHEQLRAVLLTLLEEL----P---SHLPILLLGSSSVP 810 (976)
Q Consensus 779 ~~~~~~~~~l~~ll~~~----~---~~~~v~vi~ttn~~ 810 (976)
..+.. |+..|++- . -..++.||||+|..
T Consensus 315 ~~qsa----LlEaMEe~~VtI~G~~lparf~VIAA~NP~ 349 (506)
T 3f8t_A 315 PHRWA----LMEAMDKGTVTVDGIALNARCAVLAAINPG 349 (506)
T ss_dssp HHHHH----HHHHHHHSEEEETTEEEECCCEEEEEECCC
T ss_pred HHHHH----HHHHHhCCcEEECCEEcCCCeEEEEEeCcc
Confidence 55554 44444431 1 13478899999976
No 301
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.49 E-value=0.0035 Score=69.89 Aligned_cols=30 Identities=30% Similarity=0.277 Sum_probs=26.7
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHH
Q 002045 408 YHITPPRGVLLCGPPGTGKTLIARALACAA 437 (976)
Q Consensus 408 ~~~~~~~~vLL~GppGtGKT~laralA~~l 437 (976)
.|+++..-+.|+||||+|||+|++.++..+
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356778889999999999999999999876
No 302
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.48 E-value=0.0028 Score=62.96 Aligned_cols=18 Identities=28% Similarity=0.519 Sum_probs=16.2
Q ss_pred ceeeccCCCCcHhhHHHH
Q 002045 705 RLLLCGSEGTGVDHLGPA 722 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~a 722 (976)
-+.|+||+|+||||++++
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999999994
No 303
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.47 E-value=0.0062 Score=63.70 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=18.9
Q ss_pred ceeeccCCCCcHhhHHHHHHHh
Q 002045 705 RLLLCGSEGTGVDHLGPAILHE 726 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~ 726 (976)
-++|+||||+|||++|..++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999998877654
No 304
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.47 E-value=0.0041 Score=69.20 Aligned_cols=75 Identities=11% Similarity=-0.007 Sum_probs=45.2
Q ss_pred ceeeccCCCCcHhhHHHHHHHhh--------cCCCeeecCCccccc---------C----------------CCCCC-hH
Q 002045 705 RLLLCGSEGTGVDHLGPAILHEL--------EKFPVHSLGLPALLS---------D----------------PSAKT-PE 750 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l--------~~~~~~~~~~~~l~~---------~----------------~~~g~-~e 750 (976)
-++|+|+||+|||++|..++... .+..++.++....+. . ....+ ..
T Consensus 124 i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e~~~ 203 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQM 203 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTTHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHHHHH
Confidence 37899999999999999998862 123444544332110 0 00011 11
Q ss_pred HHHHHHHHHHHh--cCCceEeccccchhHHH
Q 002045 751 EALVHIFGEARR--TTPSILYIPQFNLWWEN 779 (976)
Q Consensus 751 ~~~~~~f~~a~~--~~p~ilfiDEid~l~~~ 779 (976)
..+..+...++. ..+.+|+||.+..+...
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 222333444555 67899999999998743
No 305
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.47 E-value=0.0016 Score=66.43 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=24.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHHh
Q 002045 410 ITPPRGVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~ 438 (976)
+.+...|+|+|||||||||++++||..++
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34567899999999999999999999985
No 306
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.47 E-value=0.0043 Score=64.41 Aligned_cols=70 Identities=14% Similarity=0.084 Sum_probs=41.8
Q ss_pred eeeccCCCCcHhhHHHHHHHhh--cCCCeeecCCc-------ccccCCCCCCh-H----HHHHHHHHHHHh----cCCce
Q 002045 706 LLLCGSEGTGVDHLGPAILHEL--EKFPVHSLGLP-------ALLSDPSAKTP-E----EALVHIFGEARR----TTPSI 767 (976)
Q Consensus 706 ~Ll~G~pGtGKT~lA~aia~~l--~~~~~~~~~~~-------~l~~~~~~g~~-e----~~~~~~f~~a~~----~~p~i 767 (976)
+|++|++|+|||+++..+++.+ .+..++.+... .+.+.. |-. + .....++..++. ..+.+
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srl--G~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRT--GTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCC--CCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhc--CCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 6788999999999888877764 23444444211 222221 210 0 112345555554 34789
Q ss_pred EeccccchhH
Q 002045 768 LYIPQFNLWW 777 (976)
Q Consensus 768 lfiDEid~l~ 777 (976)
|+|||++.+.
T Consensus 93 ViIDEaQ~l~ 102 (223)
T 2b8t_A 93 IGIDEVQFFD 102 (223)
T ss_dssp EEECSGGGSC
T ss_pred EEEecCccCc
Confidence 9999999754
No 307
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.46 E-value=0.0078 Score=62.17 Aligned_cols=40 Identities=23% Similarity=0.391 Sum_probs=31.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHh
Q 002045 410 ITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS 456 (976)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~ 456 (976)
+..++-|+|.||||+||+|.|+.||+.++ +..++..+++.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g-------~~hIstGdllR 65 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFH-------FNHLSSGDLLR 65 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHC-------CEEECHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHC-------CceEcHHHHHH
Confidence 35567889999999999999999999885 34456666654
No 308
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.45 E-value=0.011 Score=59.90 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=17.0
Q ss_pred CceEEEEcCCCChHHHHHHHH
Q 002045 413 PRGVLLCGPPGTGKTLIARAL 433 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laral 433 (976)
.+++++++|+|+|||+++-..
T Consensus 38 ~~~~li~~~TGsGKT~~~~~~ 58 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFALP 58 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHHH
Confidence 367999999999999875443
No 309
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.45 E-value=0.015 Score=72.48 Aligned_cols=44 Identities=23% Similarity=0.257 Sum_probs=35.7
Q ss_pred ccChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 002045 381 IGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACA 436 (976)
Q Consensus 381 i~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~ 436 (976)
.+|.+..++.|.+.+... ...+-|.|+||.|+|||+||+.+++.
T Consensus 130 ~VGRe~eLeeL~elL~~~------------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL------------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC------------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc------------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 389999999998876431 22467899999999999999999863
No 310
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.44 E-value=0.0014 Score=66.85 Aligned_cols=32 Identities=34% Similarity=0.570 Sum_probs=27.5
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecC
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLG 736 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~ 736 (976)
..++|+|+|||||||+|++|+..+ +.+++..+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l-~~~~i~~d 57 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKL-NVPFIDLD 57 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH-TCCEEEHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc-CCCEEcch
Confidence 468999999999999999999998 67776554
No 311
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.43 E-value=0.0057 Score=64.11 Aligned_cols=41 Identities=32% Similarity=0.354 Sum_probs=30.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHH-HhhcCCcEEEEEe
Q 002045 409 HITPPRGVLLCGPPGTGKTLIARALACA-ASKAGQKVSFYMR 449 (976)
Q Consensus 409 ~~~~~~~vLL~GppGtGKT~laralA~~-l~~~~~~~~~~~~ 449 (976)
|+++..-++|+|+||+|||++|..+|.. +...+..+-|+..
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 5677888999999999999999887754 3333445555543
No 312
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.42 E-value=0.0063 Score=65.84 Aligned_cols=27 Identities=37% Similarity=0.607 Sum_probs=24.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHH
Q 002045 411 TPPRGVLLCGPPGTGKTLIARALACAA 437 (976)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l 437 (976)
..+..|+|+||||+||||+++.++..+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 446789999999999999999999876
No 313
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.39 E-value=0.0036 Score=69.82 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.9
Q ss_pred ceeeccCCCCcHhhHHHHHHHhh
Q 002045 705 RLLLCGSEGTGVDHLGPAILHEL 727 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l 727 (976)
-++|+||||+|||+|++.++..+
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999875
No 314
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.39 E-value=0.0017 Score=64.56 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=27.1
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecC
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLG 736 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~ 736 (976)
.-++|+|+||+||||+|++++..+ +.+++.++
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l-~~~~~~~~ 35 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL-PEPWLAFG 35 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS-SSCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc-CCCeEEec
Confidence 358899999999999999999998 56777654
No 315
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.35 E-value=0.0018 Score=64.66 Aligned_cols=31 Identities=26% Similarity=0.508 Sum_probs=26.3
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeec
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSL 735 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~ 735 (976)
+.++|+|+||+|||+++++++..+ +.+++.+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~-~~~~~~~ 42 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS-GLKYINV 42 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH-CCEEEEH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh-CCeEEEH
Confidence 469999999999999999999998 5555544
No 316
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.35 E-value=0.0019 Score=64.71 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=24.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHh
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (976)
+..|+|+|||||||||+++.||+.++
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999999985
No 317
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.34 E-value=0.001 Score=74.84 Aligned_cols=82 Identities=18% Similarity=0.287 Sum_probs=47.8
Q ss_pred HhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-CCcEEEEEecch-------hHHhh-hHhHHHHHHHHHHHHHHh
Q 002045 405 FASYHITPPRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYMRKGA-------DVLSK-WVGEAERQLKLLFEEAQR 475 (976)
Q Consensus 405 ~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~~~~~-------~l~~~-~~g~~~~~l~~~f~~a~~ 475 (976)
+..+.+.+...++|+||+|+||||++++++..+... ...+.++.-... .++.. .+|.....+...+..+..
T Consensus 128 l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~ 207 (372)
T 2ewv_A 128 VLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALR 207 (372)
T ss_dssp HHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTT
T ss_pred HHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhh
Confidence 333334666789999999999999999999987643 223322221100 00000 001011122344555556
Q ss_pred cCCcEEEEccc
Q 002045 476 NQPSIIFFDEI 486 (976)
Q Consensus 476 ~~p~VL~iDEi 486 (976)
..|.+|++||+
T Consensus 208 ~~pd~illdE~ 218 (372)
T 2ewv_A 208 EDPDVIFVGEM 218 (372)
T ss_dssp SCCSEEEESCC
T ss_pred hCcCEEEECCC
Confidence 68999999998
No 318
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.34 E-value=0.0028 Score=64.10 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=22.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHh
Q 002045 415 GVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (976)
.+.|+||+|+||||+++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 478999999999999999999874
No 319
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.34 E-value=0.0015 Score=65.61 Aligned_cols=33 Identities=30% Similarity=0.536 Sum_probs=26.7
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecC
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLG 736 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~ 736 (976)
..++|+|+||||||+++++++..+.+++++.++
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 458999999999999999999983266666544
No 320
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.34 E-value=0.013 Score=60.47 Aligned_cols=54 Identities=24% Similarity=0.194 Sum_probs=32.2
Q ss_pred CCCcccccChHHHHHHHHHHHHc-ccCC-hhHHhhcCCCCCceEEEEcCCCChHHHHH
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFF-PLLY-PDFFASYHITPPRGVLLCGPPGTGKTLIA 430 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~-pl~~-~~~~~~~~~~~~~~vLL~GppGtGKT~la 430 (976)
..+|+++.=.+.+++.|...-.. |..+ .+.+.. +...+++++++|+|+|||+++
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMP--IIEGHDVLAQAQSGTGKTGTF 68 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSSHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHH--HhcCCCEEEECCCCCcHHHHH
Confidence 45788886667777777664211 1101 111111 122467999999999999874
No 321
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.32 E-value=0.00096 Score=67.31 Aligned_cols=22 Identities=9% Similarity=-0.000 Sum_probs=18.0
Q ss_pred ceeeccCCCCcHhhHHHHHHHh
Q 002045 705 RLLLCGSEGTGVDHLGPAILHE 726 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~ 726 (976)
-++++||+|+|||+++..+++.
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999998666654
No 322
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.31 E-value=0.0052 Score=66.66 Aligned_cols=23 Identities=9% Similarity=0.156 Sum_probs=20.5
Q ss_pred ceeeccCCCCcHhhHHHHHHHhh
Q 002045 705 RLLLCGSEGTGVDHLGPAILHEL 727 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l 727 (976)
-++|+|+||+|||++++.|+..+
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998864
No 323
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.29 E-value=0.0016 Score=64.78 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.2
Q ss_pred CCCceEEEEcCCCChHHHHHHH
Q 002045 411 TPPRGVLLCGPPGTGKTLIARA 432 (976)
Q Consensus 411 ~~~~~vLL~GppGtGKT~lara 432 (976)
.++.-+.|+||+|+||||++++
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 4566789999999999999994
No 324
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.29 E-value=0.003 Score=63.35 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=27.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEE
Q 002045 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (976)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (976)
..|+|+|+||+||||+++.|+..++..+....++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i 37 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMV 37 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEE
Confidence 4699999999999999999999997655334444
No 325
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.28 E-value=0.002 Score=64.58 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=27.6
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecC
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLG 736 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~ 736 (976)
+.++|+|+||||||++|+.|+..+ +++++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l-g~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL-GVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH-TCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc-CCCEEeCc
Confidence 358999999999999999999998 67777654
No 326
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.28 E-value=0.011 Score=69.43 Aligned_cols=43 Identities=19% Similarity=0.163 Sum_probs=35.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-CCcEEEEEecc
Q 002045 409 HITPPRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYMRKG 451 (976)
Q Consensus 409 ~~~~~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~~~~ 451 (976)
|+.+..-++|.|+||+|||+++..+|..+... +..+.|+....
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 67788889999999999999999999888765 66677766543
No 327
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.26 E-value=0.0073 Score=63.99 Aligned_cols=28 Identities=36% Similarity=0.472 Sum_probs=25.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHh
Q 002045 411 TPPRGVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~ 438 (976)
..+..|+|+|+||+||||+++.|+..++
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4567899999999999999999999875
No 328
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.25 E-value=0.0084 Score=63.80 Aligned_cols=40 Identities=25% Similarity=0.304 Sum_probs=29.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhH
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l 454 (976)
+..|+|+|+||+||||+++.|+..+...++ .++.++...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~--~~i~~~~D~~ 43 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNI--DVIVLGSDLI 43 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTC--CEEEECTHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCC--EEEEECchHH
Confidence 457999999999999999999998765543 3333444443
No 329
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.25 E-value=0.0026 Score=64.02 Aligned_cols=29 Identities=34% Similarity=0.602 Sum_probs=25.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHHh
Q 002045 410 ITPPRGVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~ 438 (976)
+..+..|+|+|+||+||||+++.|+..++
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34567899999999999999999999885
No 330
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.25 E-value=0.024 Score=62.54 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=36.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecc
Q 002045 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (976)
Q Consensus 409 ~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~ 451 (976)
|+.+..-++|.|+||+|||+++..+|..+...+..+.|++...
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm 84 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM 84 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 6788888999999999999999999988877776777776543
No 331
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.24 E-value=0.0025 Score=62.74 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=26.6
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeeecC
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLG 736 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~ 736 (976)
-++|+|+|||||||+|+.|+..+ +.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l-~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL-KYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH-CCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCeeecCc
Confidence 37899999999999999999998 66776555
No 332
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.24 E-value=0.013 Score=72.19 Aligned_cols=60 Identities=20% Similarity=0.247 Sum_probs=36.1
Q ss_pred CCcccccChHHHHHHHHHHHHcccCC--hhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHH
Q 002045 376 VSFDDIGGLSEYIDALKEMVFFPLLY--PDFFASYHITPPRGVLLCGPPGTGKTLIARALACAA 437 (976)
Q Consensus 376 ~~~~~i~G~~~~k~~l~~~v~~pl~~--~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l 437 (976)
..|+++.-.....+.+...-..|... ..+... +.....++++||+|+|||+++..++...
T Consensus 72 ~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~--l~~~~~vii~gpTGSGKTtllp~ll~~~ 133 (773)
T 2xau_A 72 NPFTGREFTPKYVDILKIRRELPVHAQRDEFLKL--YQNNQIMVFVGETGSGKTTQIPQFVLFD 133 (773)
T ss_dssp CTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHH--HHHCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccccCCCHHHHHHHHHhhcCChHHHHHHHHHH--HhCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 35666655555666665554455322 111111 2334679999999999999777775443
No 333
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.23 E-value=0.009 Score=62.67 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHH
Q 002045 415 GVLLCGPPGTGKTLIARALACAA 437 (976)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l 437 (976)
.++|+||+|+|||.++.+++..+
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc
Confidence 59999999999999999888765
No 334
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.22 E-value=0.0087 Score=68.31 Aligned_cols=103 Identities=14% Similarity=0.174 Sum_probs=61.7
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcc-------------------cccCCCCCChHHHHHHHHHHHHh
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPA-------------------LLSDPSAKTPEEALVHIFGEARR 762 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~-------------------l~~~~~~g~~e~~~~~~f~~a~~ 762 (976)
.-++|+|++|+||||++..+|..+. +..+..+++.. ++..+....+...+...+..++.
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~ 180 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKS 180 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHh
Confidence 4588999999999999888887643 23333333211 12122223445556677888887
Q ss_pred cCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecC
Q 002045 763 TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSS 808 (976)
Q Consensus 763 ~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn 808 (976)
..+.+|+||.+-.+.. ...+...+..+.....+...++|+-++.
T Consensus 181 ~~~DvVIIDTaGrl~~--d~~lm~el~~i~~~~~pd~vlLVvDA~~ 224 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKE--DKALIEEMKQISNVIHPHEVILVIDGTI 224 (443)
T ss_dssp TTCSEEEEECCCCSSC--CHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred CCCCEEEEECCCcccc--hHHHHHHHHHHHHhhcCceEEEEEeCCC
Confidence 7789999998865432 1233334444444444555566665554
No 335
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.22 E-value=0.0033 Score=63.05 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=27.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEE
Q 002045 415 GVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (976)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (976)
.|+|.|+||+||||+++.|++.++..+..+.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 35 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKII 35 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence 589999999999999999999998666555544
No 336
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.20 E-value=0.022 Score=66.34 Aligned_cols=76 Identities=14% Similarity=0.203 Sum_probs=47.7
Q ss_pred Cc-eEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCc-ccCcCCCCCCcCCccEEEecCCCHHHHHHHH
Q 002045 765 PS-ILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPL-AEVEGDPSTVFPLRSVYQVEKPSTEDRSLFL 842 (976)
Q Consensus 765 p~-ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~-~~Ld~~~~~~~~~r~~i~v~~P~~~er~~i~ 842 (976)
|- +|+|||+..++......+...|..+... -...+|.+|.+|.+|. +.|+..+...+. ..|-|...+..+...|+
T Consensus 297 P~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~-gRa~GI~LIlaTQrp~~dvl~~~i~~n~~--~RI~lrv~s~~dsr~il 373 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTVGKKVEELIARLAQK-ARAAGIHLVLATQRPSVDVITGLIKANIP--TRIAFTVSSKIDSRTIL 373 (512)
T ss_dssp CEEEEEEETHHHHHHHHHHHHHHHHHHHHHH-CGGGTEEEEEEESCCCTTTSCHHHHHHCC--EEEEECCSSHHHHHHHH
T ss_pred CcEEEEEeCHHHHHhhhhHHHHHHHHHHHHH-hhhCCcEEEEEecCCccccccHHHHhhcC--CeEEEEcCCHHHHHHhc
Confidence 53 8899999998865555555544444433 3344777788889883 234432223333 44557888888887776
Q ss_pred H
Q 002045 843 G 843 (976)
Q Consensus 843 ~ 843 (976)
.
T Consensus 374 g 374 (512)
T 2ius_A 374 D 374 (512)
T ss_dssp S
T ss_pred C
Confidence 5
No 337
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.19 E-value=0.014 Score=70.06 Aligned_cols=26 Identities=38% Similarity=0.505 Sum_probs=22.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhh
Q 002045 414 RGVLLCGPPGTGKTLIARALACAASK 439 (976)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~ 439 (976)
..++++|+||||||+++..+...+..
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~ 190 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQ 190 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999988887753
No 338
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.19 E-value=0.013 Score=63.58 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=33.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhh-cCCcEEEEEecc
Q 002045 412 PPRGVLLCGPPGTGKTLIARALACAASK-AGQKVSFYMRKG 451 (976)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~-~~~~~~~~~~~~ 451 (976)
.+..++|+||+|+||||++..+|..+.. .|..+.++..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 4678999999999999999999999874 676777765543
No 339
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.15 E-value=0.0021 Score=63.79 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=25.8
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeeec
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSL 735 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~ 735 (976)
.++|+|+|||||||+|++||..+ +++++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l-~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL-DLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH-TCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc-CCCEEcc
Confidence 58999999999999999999998 6666543
No 340
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.11 E-value=0.0042 Score=68.34 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=19.8
Q ss_pred ceeeccCCCCcHhhHHHHHHHh
Q 002045 705 RLLLCGSEGTGVDHLGPAILHE 726 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~ 726 (976)
-++|+|+||+|||++|..++..
T Consensus 100 i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 100 VTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998875
No 341
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.11 E-value=0.0029 Score=64.37 Aligned_cols=31 Identities=32% Similarity=0.502 Sum_probs=27.0
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeeecC
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLG 736 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~ 736 (976)
.|+|+|+|||||||+|+.|+..+ +++++.++
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l-~~~~i~~d 52 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL-GIPQISTG 52 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH-TCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcEEehh
Confidence 58899999999999999999998 67776654
No 342
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.10 E-value=0.004 Score=62.46 Aligned_cols=28 Identities=36% Similarity=0.587 Sum_probs=24.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHH-Hh
Q 002045 411 TPPRGVLLCGPPGTGKTLIARALACA-AS 438 (976)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~-l~ 438 (976)
..+..|+|+|+|||||||+++.++.. ++
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g 36 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDG 36 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 34567999999999999999999998 44
No 343
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.08 E-value=0.0039 Score=62.13 Aligned_cols=27 Identities=37% Similarity=0.630 Sum_probs=24.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHh
Q 002045 412 PPRGVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~ 438 (976)
.+..|+|+|+||+||||++++++..++
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 356799999999999999999999885
No 344
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.04 E-value=0.0012 Score=73.42 Aligned_cols=127 Identities=13% Similarity=0.088 Sum_probs=77.5
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcC--C-CeeecCCcccccCCCCCChHHHHHHHHHHHHh----cCCceEeccccch-
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEK--F-PVHSLGLPALLSDPSAKTPEEALVHIFGEARR----TTPSILYIPQFNL- 775 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~--~-~~~~~~~~~l~~~~~~g~~e~~~~~~f~~a~~----~~p~ilfiDEid~- 775 (976)
+.+||+||+|+||++++.++++.+.. + ++..+. + .| +..+++++..+.. ...-|++|||++.
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~-~~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~k 88 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-------I-DP--NTDWNAIFSLCQAMSLFASRQTLLLLLPENG 88 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-------C-CT--TCCHHHHHHHHHHHHHCCSCEEEEEECCSSC
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-------e-cC--CCCHHHHHHHhcCcCCccCCeEEEEECCCCC
Confidence 56999999999999999999886522 1 111111 1 11 1245666665543 3356999999998
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcC---CCCCCcCCccEEEecCCCHHHHHHHHHHHHH
Q 002045 776 WWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEG---DPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (976)
Q Consensus 776 l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~---~~~~~~~~r~~i~v~~P~~~er~~i~~~~l~ 847 (976)
+.... .+.|+..|+..+ ...++|++|++.. ..+. ....+.....++.|.+++..+....++..+.
T Consensus 89 l~~~~----~~aLl~~le~p~-~~~~~il~~~~~~--~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~ 156 (343)
T 1jr3_D 89 PNAAI----NEQLLTLTGLLH-DDLLLIVRGNKLS--KAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAK 156 (343)
T ss_dssp CCTTH----HHHHHHHHTTCB-TTEEEEEEESCCC--TTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHH
T ss_pred CChHH----HHHHHHHHhcCC-CCeEEEEEcCCCC--hhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHH
Confidence 65433 344666676544 3456666665422 1111 0011122126888999999999988888776
No 345
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.04 E-value=0.0064 Score=60.88 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=22.0
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE 728 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~ 728 (976)
-++|+|+||+||||+++.|+..+.
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999873
No 346
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.04 E-value=0.036 Score=63.71 Aligned_cols=42 Identities=24% Similarity=0.171 Sum_probs=34.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEec
Q 002045 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (976)
Q Consensus 409 ~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~ 450 (976)
|+.+..-++|.|+||+|||+++..+|..+...+..+-|++..
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 678888899999999999999999998887666666666443
No 347
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.04 E-value=0.0073 Score=71.85 Aligned_cols=91 Identities=21% Similarity=0.361 Sum_probs=52.7
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcccccCCCCCChHHHH-----------HHHHHHH---------H
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPSAKTPEEAL-----------VHIFGEA---------R 761 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~l~~~~~~g~~e~~~-----------~~~f~~a---------~ 761 (976)
..++|.|+||||||+++.+++..+. +..++.+. + .|.....+ ..++... .
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A-------p-T~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~ 276 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA-------P-TGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLE 276 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE-------S-SHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec-------C-cHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcc
Confidence 3588999999999999999988653 22333221 1 11111111 1111100 0
Q ss_pred hcCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCC
Q 002045 762 RTTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSV 809 (976)
Q Consensus 762 ~~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~ 809 (976)
.....+|+|||+..+... .+..++..++....++++|-.+.
T Consensus 277 ~~~~dvlIIDEasml~~~-------~~~~Ll~~~~~~~~lilvGD~~Q 317 (574)
T 3e1s_A 277 PAPYDLLIVDEVSMMGDA-------LMLSLLAAVPPGARVLLVGDTDQ 317 (574)
T ss_dssp CCSCSEEEECCGGGCCHH-------HHHHHHTTSCTTCEEEEEECTTS
T ss_pred cccCCEEEEcCccCCCHH-------HHHHHHHhCcCCCEEEEEecccc
Confidence 113479999999876432 34455666676677888776553
No 348
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.02 E-value=0.0054 Score=65.39 Aligned_cols=70 Identities=11% Similarity=0.366 Sum_probs=42.4
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcC---CCeeecCCc--ccc-------cCCCCCChHHHHHHHHHHHHhcCCceEeccc
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEK---FPVHSLGLP--ALL-------SDPSAKTPEEALVHIFGEARRTTPSILYIPQ 772 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~---~~~~~~~~~--~l~-------~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDE 772 (976)
-++|+||+|+||||+.++++..+.. -.++....+ .+. ....+|.....++..+..|-...|.||++||
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~illlDE 106 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVGE 106 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEESC
T ss_pred EEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEeCC
Confidence 3789999999999999999986521 122221111 001 0000111112345666677677899999999
Q ss_pred cc
Q 002045 773 FN 774 (976)
Q Consensus 773 id 774 (976)
.-
T Consensus 107 p~ 108 (261)
T 2eyu_A 107 MR 108 (261)
T ss_dssp CC
T ss_pred CC
Confidence 95
No 349
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.00 E-value=0.0078 Score=68.67 Aligned_cols=105 Identities=13% Similarity=0.152 Sum_probs=57.4
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCc-------------------ccccCCCCCChHHHHHHHHHHHHh
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLP-------------------ALLSDPSAKTPEEALVHIFGEARR 762 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~-------------------~l~~~~~~g~~e~~~~~~f~~a~~ 762 (976)
.-++|+|++|+||||++..+|..+. +..+..+++. .++.......+.......+..+..
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~~ 177 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVK 177 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHHh
Confidence 3478999999999999998887542 2333332211 011111112233334456666666
Q ss_pred cCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecC
Q 002045 763 TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSS 808 (976)
Q Consensus 763 ~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn 808 (976)
..+.+|+||....+.......+...+..++..+.+...++|+-++.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCcc
Confidence 6789999999876431011223344444444444444455555544
No 350
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.98 E-value=0.0037 Score=66.36 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=27.5
Q ss_pred eeeccCCCCcHhhHHHHHHHhhcCCCeeecCC
Q 002045 706 LLLCGSEGTGVDHLGPAILHELEKFPVHSLGL 737 (976)
Q Consensus 706 ~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~ 737 (976)
++|+||||||||++|++||..+ +..++..+.
T Consensus 4 i~I~G~~GSGKSTla~~La~~~-~~~~i~~D~ 34 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQET-GWPVVALDR 34 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH-CCCEEECCS
T ss_pred EEEECCCCcCHHHHHHHHHhcC-CCeEEeccH
Confidence 7899999999999999999998 677877764
No 351
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.95 E-value=0.0032 Score=63.32 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=25.9
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeec
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSL 735 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~ 735 (976)
.-++|+|+||+||||+|+.++..+ +.+++..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l-~~~~i~~ 36 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL-RLPLLSK 36 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH-TCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc-CCeEecH
Confidence 358899999999999999999988 6666553
No 352
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.95 E-value=0.0033 Score=61.94 Aligned_cols=31 Identities=29% Similarity=0.374 Sum_probs=27.5
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeeecC
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLG 736 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~ 736 (976)
.++|.|+|||||||+|+.+|..+ +++++..+
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~l-g~~~id~D 39 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLAL-KLEVLDTD 39 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH-TCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh-CCCEEECh
Confidence 58999999999999999999998 77777654
No 353
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.94 E-value=0.0043 Score=61.57 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=22.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHh
Q 002045 415 GVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (976)
.|+|+|+||+||||++++||..++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 599999999999999999999985
No 354
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.93 E-value=0.014 Score=59.38 Aligned_cols=24 Identities=33% Similarity=0.659 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHH
Q 002045 414 RGVLLCGPPGTGKTLIARALACAA 437 (976)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l 437 (976)
.++++++|+|+|||+++-.++..+
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999998777654
No 355
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.91 E-value=0.01 Score=68.77 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.5
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE 728 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~ 728 (976)
.+||.|+||||||+++.+++..+.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998763
No 356
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.90 E-value=0.0077 Score=60.33 Aligned_cols=37 Identities=41% Similarity=0.454 Sum_probs=30.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEE
Q 002045 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (976)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (976)
..+..|+|+|+||+||||+++.++..+...+..+.++
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 3456799999999999999999999998766555443
No 357
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.89 E-value=0.03 Score=58.23 Aligned_cols=56 Identities=21% Similarity=0.192 Sum_probs=33.2
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhc---CCCCCceEEEEcCCCChHHHHHHH
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASY---HITPPRGVLLCGPPGTGKTLIARA 432 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~---~~~~~~~vLL~GppGtGKT~lara 432 (976)
+..+|+++.-...+.+.|.+.-.. .+.-+... .+...+++++++|+|+|||+++-.
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~~~~---~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~ 81 (236)
T 2pl3_A 23 EITRFSDFPLSKKTLKGLQEAQYR---LVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLV 81 (236)
T ss_dssp GCSBGGGSCCCHHHHHHHHHTTCC---BCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHH
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCC---CCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHH
Confidence 345688887666777777653211 11111110 012246899999999999996554
No 358
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.88 E-value=0.0043 Score=66.36 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHH
Q 002045 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (976)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (976)
+.+..-+.|.||+|+|||||+++|+..+
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4556678899999999999999998654
No 359
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.88 E-value=0.0031 Score=62.03 Aligned_cols=29 Identities=21% Similarity=0.349 Sum_probs=23.7
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeeec
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSL 735 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~ 735 (976)
-++|+|+||+||||+|+.+ ..+ +++++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~-g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER-GAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT-TCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHC-CCcEEEH
Confidence 4789999999999999999 665 6665554
No 360
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.85 E-value=0.0097 Score=63.02 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=28.4
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCccc
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPAL 740 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l 740 (976)
..++|+|+||+||||+|+.|+..+ +.+++.++...+
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l-~~~~~~~~~D~~ 68 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEF-QGNIVIIDGDSF 68 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHT-TTCCEEECGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc-CCCcEEEecHHH
Confidence 458999999999999999999987 445566665444
No 361
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=95.83 E-value=0.023 Score=59.33 Aligned_cols=59 Identities=19% Similarity=0.131 Sum_probs=33.3
Q ss_pred CCCCcccccChHHHHHHHHHHHHc-ccCCh-hHHhhcCCCCCceEEEEcCCCChHHHHHHHHH
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFF-PLLYP-DFFASYHITPPRGVLLCGPPGTGKTLIARALA 434 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~-pl~~~-~~~~~~~~~~~~~vLL~GppGtGKT~laralA 434 (976)
+..+|+++.=...+.+.|...-.. |..++ +.+.. +-...++++++|+|+|||+++-..+
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~--i~~~~~~li~apTGsGKT~~~~l~~ 88 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIP--CIKGYDVIAQAQSGTGKTATFAISI 88 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHH--HHTTCCEEECCCSSHHHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCCCcHHHHHHHHH
Confidence 346788886566666666553211 11111 11111 1124679999999999998754333
No 362
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.82 E-value=0.0081 Score=61.05 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=27.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCC
Q 002045 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQ 442 (976)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~ 442 (976)
.++..|.|.||+|+||||++++|+..+...+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~ 54 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGK 54 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCc
Confidence 45678999999999999999999999975453
No 363
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.82 E-value=0.0052 Score=62.48 Aligned_cols=32 Identities=22% Similarity=0.420 Sum_probs=26.5
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecC
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLG 736 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~ 736 (976)
.-++|+|+||+||||+|+.|+..+ +..++..+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l-g~~~i~~d 50 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC-GYPFIEGD 50 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH-TCCEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-CCEEEeCC
Confidence 358999999999999999999998 55565543
No 364
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.82 E-value=0.0084 Score=66.24 Aligned_cols=69 Identities=13% Similarity=0.224 Sum_probs=46.7
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcC-CCeeecCCccccc--------CCC--CCChHHHHHHHHHHHHhcCCceEeccc
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEK-FPVHSLGLPALLS--------DPS--AKTPEEALVHIFGEARRTTPSILYIPQ 772 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~-~~~~~~~~~~l~~--------~~~--~g~~e~~~~~~f~~a~~~~p~ilfiDE 772 (976)
..++|+||+|+||||++++|+..+.. ...+.++....+. .+. .|+ ..+..+..|-...|.+|++||
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~---~~r~~la~aL~~~p~ilildE 248 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNI---TSADCLKSCLRMRPDRIILGE 248 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTB---CHHHHHHHHTTSCCSEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCCh---hHHHHHHHHhhhCCCEEEEcC
Confidence 35899999999999999999987532 2344444321110 011 232 445566677778999999999
Q ss_pred cch
Q 002045 773 FNL 775 (976)
Q Consensus 773 id~ 775 (976)
+-.
T Consensus 249 ~~~ 251 (330)
T 2pt7_A 249 LRS 251 (330)
T ss_dssp CCS
T ss_pred CCh
Confidence 886
No 365
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.81 E-value=0.0067 Score=65.72 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=35.4
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCC
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKT 748 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~ 748 (976)
+-++|+||+|+|||+||..+|+.+ +..+++.+.-.+..+..+|+
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~-~~~iis~Ds~qvY~~~~igT 54 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL-PVELISVDSALIYKGMDIGT 54 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS-CEEEEECCTTTTBTTCCTTT
T ss_pred cEEEEECCCccCHHHHHHHHHHhC-CCcEEecccccccccccccC
Confidence 357899999999999999999997 56788887766666555554
No 366
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.79 E-value=0.0046 Score=61.01 Aligned_cols=29 Identities=21% Similarity=0.485 Sum_probs=24.3
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCee
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVH 733 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~ 733 (976)
..++|+|+|||||||++++|+..+ +.+++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l-~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL-NMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT-TCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh-CCCEE
Confidence 358999999999999999999987 44443
No 367
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.78 E-value=0.012 Score=57.74 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHh
Q 002045 415 GVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (976)
.|+|+||||+||||+++.| ..++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTT
T ss_pred EEEEECCCCCCHHHHHHHH-HHCC
Confidence 5899999999999999999 6553
No 368
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.78 E-value=0.0086 Score=61.23 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=29.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEE
Q 002045 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVS 445 (976)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~ 445 (976)
.+..|+|+|+||+||||+++.|++.++..+..+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~ 41 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAE 41 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 4567999999999999999999999987765553
No 369
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.77 E-value=0.0046 Score=60.77 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=22.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHh
Q 002045 415 GVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (976)
.|+|.||||+||||+++.|+..++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999985
No 370
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.77 E-value=0.047 Score=56.90 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=18.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 002045 413 PRGVLLCGPPGTGKTLIARALAC 435 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~ 435 (976)
...++++||+|||||+++..+.-
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHHh
Confidence 46899999999999987765543
No 371
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.77 E-value=0.0041 Score=63.98 Aligned_cols=31 Identities=32% Similarity=0.508 Sum_probs=26.2
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeeecC
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLG 736 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~ 736 (976)
.|+|+|+||+||||+|+.|+..+ +++++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-~~~~i~~d 32 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY-GIPHISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS-SCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcEEeHH
Confidence 37899999999999999999987 66666553
No 372
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.76 E-value=0.0039 Score=61.51 Aligned_cols=31 Identities=16% Similarity=0.468 Sum_probs=26.2
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeeecC
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLG 736 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~ 736 (976)
.++|+|+||||||++|+.++..+ +.+++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l-g~~~id~d 34 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL-GYEFVDTD 34 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH-TCEEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh-CCcEEccc
Confidence 48999999999999999999988 66666543
No 373
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.75 E-value=0.0042 Score=64.22 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=26.5
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeec
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSL 735 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~ 735 (976)
..++|+|+||+||||+|+.|+..+ +++++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF-HAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH-CCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc-CceEEeh
Confidence 358999999999999999999998 5666654
No 374
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.75 E-value=0.0059 Score=67.07 Aligned_cols=43 Identities=21% Similarity=0.253 Sum_probs=34.6
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCC
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKT 748 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~ 748 (976)
-++|+||+|||||+||..||+.+ +..+|+.+.-.++.+..+|+
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l-~~eiIs~Ds~qvYr~mdIgT 84 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHF-PLEVINSDKMQVYKGLDITT 84 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTS-CEEEEECCSSTTBSSCTTTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHC-CCcEEcccccccccceeeec
Confidence 48899999999999999999998 56788888666655554554
No 375
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.73 E-value=0.0049 Score=60.79 Aligned_cols=25 Identities=44% Similarity=0.743 Sum_probs=23.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHh
Q 002045 414 RGVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~ 438 (976)
..|+|+||+|+||||+++.||..++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999999875
No 376
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.73 E-value=0.0042 Score=62.58 Aligned_cols=32 Identities=19% Similarity=0.355 Sum_probs=26.8
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecC
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLG 736 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~ 736 (976)
.-++|+|+|||||||+|+.++..+ +.+++..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l-~~~~i~~d 41 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY-GYTHLSTG 41 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH-CCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh-CCeEEcHH
Confidence 358999999999999999999988 66666544
No 377
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.72 E-value=0.064 Score=54.93 Aligned_cols=61 Identities=21% Similarity=0.151 Sum_probs=35.6
Q ss_pred CCCcccccChHHHHHHHHHHHHc-ccCCh-hHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHH
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFF-PLLYP-DFFASYHITPPRGVLLCGPPGTGKTLIARALACAA 437 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~-pl~~~-~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l 437 (976)
..+|++++=.+.+.+.|.+.-.. |..+. +.+..+ -...++++.+|+|+|||+++-..+-..
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~--~~~~~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQA--ILGMDVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH--hCCCCEEEECCCCCchhhhhhHHHHHh
Confidence 45688886667777777653211 11111 111111 123679999999999998776655444
No 378
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.72 E-value=0.0038 Score=62.48 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=25.1
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeeec
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSL 735 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~ 735 (976)
.++|+|+|||||||+|+.++..+ +++++..
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l-~~~~i~~ 35 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL-GFKKLST 35 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-TCEEECH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCeEecH
Confidence 48899999999999999999987 5555543
No 379
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.71 E-value=0.0094 Score=60.84 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=29.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEE
Q 002045 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVS 445 (976)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~ 445 (976)
.+..|+|.|+||+||||+++.|++.++..+..+.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~ 42 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK 42 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 3567999999999999999999999987765553
No 380
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.71 E-value=0.027 Score=57.05 Aligned_cols=20 Identities=30% Similarity=0.267 Sum_probs=16.6
Q ss_pred CceEEEEcCCCChHHHHHHH
Q 002045 413 PRGVLLCGPPGTGKTLIARA 432 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~lara 432 (976)
.+++++++|+|+|||.++-.
T Consensus 40 ~~~~lv~apTGsGKT~~~~~ 59 (206)
T 1vec_A 40 GRDILARAKNGTGKSGAYLI 59 (206)
T ss_dssp TCCEEEECCSSSTTHHHHHH
T ss_pred CCCEEEECCCCCchHHHHHH
Confidence 36899999999999976553
No 381
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.71 E-value=0.0046 Score=63.58 Aligned_cols=31 Identities=26% Similarity=0.470 Sum_probs=26.2
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeeecC
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLG 736 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~ 736 (976)
.|+|+|+||+||||+|+.++..+ +++++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-~~~~i~~d 32 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY-EIPHISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-CCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcEeeHH
Confidence 37899999999999999999988 66666553
No 382
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.71 E-value=0.0039 Score=62.62 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=26.3
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecC
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLG 736 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~ 736 (976)
.-++|+|+|||||||+|+.++..+ +++++..+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~-~~~~i~~d 35 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY-GYTHLSAG 35 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH-CCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-CCeEEeHH
Confidence 358899999999999999999987 56665443
No 383
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.70 E-value=0.0055 Score=61.21 Aligned_cols=24 Identities=46% Similarity=0.675 Sum_probs=22.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHh
Q 002045 415 GVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (976)
.|+|+|+||+||||+++.|+..++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 599999999999999999999986
No 384
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.70 E-value=0.0074 Score=65.46 Aligned_cols=73 Identities=10% Similarity=0.114 Sum_probs=43.0
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc----CCCeeecCCccccc------------CCC---CCChHHHHHHHHHH---HHh
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE----KFPVHSLGLPALLS------------DPS---AKTPEEALVHIFGE---ARR 762 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~----~~~~~~~~~~~l~~------------~~~---~g~~e~~~~~~f~~---a~~ 762 (976)
.++|+||||+|||+|+..++..+. +..++.++...-+. ..+ .-..++..-.+... ++.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 478999999999999877766532 33455555432111 000 01222220222222 355
Q ss_pred cCCceEeccccchhH
Q 002045 763 TTPSILYIPQFNLWW 777 (976)
Q Consensus 763 ~~p~ilfiDEid~l~ 777 (976)
..|.+|+||-|..+.
T Consensus 110 ~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 110 GEKVVVFIDSLGNLA 124 (333)
T ss_dssp TCCEEEEEECSTTCB
T ss_pred cCceEEEEecccccc
Confidence 679999999999997
No 385
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.68 E-value=0.0041 Score=64.65 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=26.3
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeec
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSL 735 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~ 735 (976)
..++|+|+|||||||+|+.|+..+ +++++.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF-ELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS-SSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc-CCeEEec
Confidence 458999999999999999999987 5666554
No 386
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.68 E-value=0.0075 Score=65.44 Aligned_cols=43 Identities=14% Similarity=0.058 Sum_probs=34.0
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCCC
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKT 748 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g~ 748 (976)
-++|+||+|+|||+||..+|+.+ +..+++.+.-.+..+..+|+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~-~~~iis~Ds~QvYr~~~igT 47 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL-NGEVISGDSMQVYRGMDIGT 47 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT-TEEEEECCGGGGBTTCCTTT
T ss_pred EEEEECCCcCCHHHHHHHHHHhC-ccceeecCcccceeeeeecC
Confidence 47899999999999999999987 45677777666665555554
No 387
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.67 E-value=0.0059 Score=60.04 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=23.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHh
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (976)
..+|+|.|+|||||||+++.||..++
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999999986
No 388
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.66 E-value=0.0052 Score=63.53 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=27.1
Q ss_pred CCceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccc
Q 002045 703 RPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALL 741 (976)
Q Consensus 703 ~~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~ 741 (976)
++-|+|.||||+||+|.|+.|+..+ ++ ..|+..+++
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~-g~--~hIstGdll 64 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKF-HF--NHLSSGDLL 64 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHH-CC--EEECHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-CC--ceEcHHHHH
Confidence 3447788999999999999999987 54 444444444
No 389
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.66 E-value=0.023 Score=61.89 Aligned_cols=71 Identities=13% Similarity=0.149 Sum_probs=43.0
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcc-------------------cccCCCCCChHHHHHHHHHHHHhc
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPA-------------------LLSDPSAKTPEEALVHIFGEARRT 763 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~-------------------l~~~~~~g~~e~~~~~~f~~a~~~ 763 (976)
-++|+|++|+||||++..+|..+. +..+..++... ++.....++....+...+..|...
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~~~ 185 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALAR 185 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHHhc
Confidence 478999999999999999998652 22333322110 111112234333334455556667
Q ss_pred CCceEeccccch
Q 002045 764 TPSILYIPQFNL 775 (976)
Q Consensus 764 ~p~ilfiDEid~ 775 (976)
.|.+|+||+.-.
T Consensus 186 ~~dvvIiDtpg~ 197 (306)
T 1vma_A 186 NKDVVIIDTAGR 197 (306)
T ss_dssp TCSEEEEEECCC
T ss_pred CCCEEEEECCCc
Confidence 788888888864
No 390
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.66 E-value=0.012 Score=60.18 Aligned_cols=35 Identities=31% Similarity=0.464 Sum_probs=27.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHh
Q 002045 415 GVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS 456 (976)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~ 456 (976)
.|+|.||||+||+|.|+.||+.++ + ..++..+++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g-----~--~~istGdllR 36 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG-----F--VHISTGDILR 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-----C--EEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-----C--eEEcHHHHHH
Confidence 478999999999999999999985 3 3455566654
No 391
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.65 E-value=0.034 Score=61.47 Aligned_cols=62 Identities=11% Similarity=0.105 Sum_probs=36.5
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhHHhhc--CCCCCceEEEEcCCCChHHHHHHHHHHHH
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASY--HITPPRGVLLCGPPGTGKTLIARALACAA 437 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~--~~~~~~~vLL~GppGtGKT~laralA~~l 437 (976)
..+|+++.=.+.+.+.|...-...+ ++--...+ -+....++++.+|+|+|||+++-..+..+
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~-~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKP-TDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSC-CHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCC-CHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHH
Confidence 3568888666677777766432111 11111110 01223689999999999999877665554
No 392
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.65 E-value=0.021 Score=60.63 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=27.2
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcc
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPA 739 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~ 739 (976)
-++|+|+||+||||+|+.++..+. +.+++.++...
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~ 42 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDL 42 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchH
Confidence 488999999999999999999742 55666445443
No 393
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.63 E-value=0.015 Score=60.85 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=23.3
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeee
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHS 734 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~ 734 (976)
.+|++||+|+|||++|.+++..+ +..++.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~-~~~~li 138 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINEL-STPTLI 138 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHS-CSCEEE
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc-CCCEEE
Confidence 48999999999999999888876 334433
No 394
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.62 E-value=0.0054 Score=60.19 Aligned_cols=31 Identities=23% Similarity=0.427 Sum_probs=26.5
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeeecC
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLG 736 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~ 736 (976)
.++|+|+||+|||++|+.++..+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l-~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL-NIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH-TCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh-CCCEEECc
Confidence 37899999999999999999988 66776544
No 395
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.61 E-value=0.0072 Score=60.81 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=24.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHh
Q 002045 412 PPRGVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~ 438 (976)
.+..|+|.|+||+||||+++.|++.++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999999885
No 396
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=95.61 E-value=0.046 Score=57.58 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=31.9
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhHHhhcC---CCCCceEEEEcCCCChHHHHHHH
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYH---ITPPRGVLLCGPPGTGKTLIARA 432 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~---~~~~~~vLL~GppGtGKT~lara 432 (976)
..+|+++.-...+++.|...-.. .+.-+.... +...+++++.+|+|+|||+++-.
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~g~~---~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~ 99 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQLGWT---KPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 99 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHTTCC---SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHH
T ss_pred cCCHHHcCCCHHHHHHHHHcCCC---CCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHH
Confidence 45688886566666666553211 111111100 12346899999999999987543
No 397
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.60 E-value=0.016 Score=69.53 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=19.8
Q ss_pred CceeeccCCCCcHhhHHHHHHHhh
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHEL 727 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l 727 (976)
+-+++.|+||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 358999999999999888776654
No 398
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.59 E-value=0.0048 Score=62.31 Aligned_cols=32 Identities=19% Similarity=0.357 Sum_probs=26.4
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecC
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLG 736 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~ 736 (976)
.-++|+|+||+||||+|+.++..+ +++++..+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l-~~~~i~~d 44 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY-GFTHLSTG 44 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH-TCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh-CCeEEcHH
Confidence 458999999999999999999998 55555443
No 399
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.58 E-value=0.0057 Score=62.74 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=23.9
Q ss_pred eeeccCCCCcHhhHHHHHHHhhcCCCeee
Q 002045 706 LLLCGSEGTGVDHLGPAILHELEKFPVHS 734 (976)
Q Consensus 706 ~Ll~G~pGtGKT~lA~aia~~l~~~~~~~ 734 (976)
++|.||||+||+|.|+.|++.+ +++.++
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~-g~~~is 30 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK-GFVHIS 30 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH-CCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHH-CCeEEc
Confidence 7899999999999999999987 554443
No 400
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.58 E-value=0.0052 Score=64.18 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=26.4
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeec
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSL 735 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~ 735 (976)
..++|.|+|||||||+|+.|+..+ +++++.+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF-CVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH-TCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-CCceecH
Confidence 358999999999999999999998 5666654
No 401
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.56 E-value=0.018 Score=62.91 Aligned_cols=33 Identities=33% Similarity=0.417 Sum_probs=27.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecc
Q 002045 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (976)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~ 451 (976)
..|+|+||+|+|||++++.||+.++ ..++.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~-----~~iis~Ds 38 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP-----CELISVDS 38 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC-----EEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC-----CcEEeccc
Confidence 4799999999999999999999875 55665543
No 402
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.55 E-value=0.013 Score=62.85 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.1
Q ss_pred ceeeccCCCCcHhhHHHHHHHhh
Q 002045 705 RLLLCGSEGTGVDHLGPAILHEL 727 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l 727 (976)
-++|+||||+|||+|+..++..+
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 48899999999999999998643
No 403
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.54 E-value=0.005 Score=64.88 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=26.6
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecC
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLG 736 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~ 736 (976)
..|+|+|+||+||||+|+.|++.+ ++++++++
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~-g~~~is~~ 61 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSH-CYCHLSTG 61 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH-CCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh-CCeEEecH
Confidence 468999999999999999999987 55555543
No 404
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.54 E-value=0.011 Score=66.53 Aligned_cols=70 Identities=11% Similarity=0.367 Sum_probs=42.5
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcC---CCeeecCCc-cc--------ccCCCCCChHHHHHHHHHHHHhcCCceEeccc
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEK---FPVHSLGLP-AL--------LSDPSAKTPEEALVHIFGEARRTTPSILYIPQ 772 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~---~~~~~~~~~-~l--------~~~~~~g~~e~~~~~~f~~a~~~~p~ilfiDE 772 (976)
.++|+||+|+||||+.++|+..+.. -.++.+..+ ++ +....+|.....+...+..+....|.+|++||
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~illdE 217 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVGE 217 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEEECC
Confidence 4889999999999999999986532 223333211 10 00000011112334556666667899999999
Q ss_pred cc
Q 002045 773 FN 774 (976)
Q Consensus 773 id 774 (976)
+-
T Consensus 218 ~~ 219 (372)
T 2ewv_A 218 MR 219 (372)
T ss_dssp CC
T ss_pred CC
Confidence 95
No 405
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.54 E-value=0.013 Score=59.65 Aligned_cols=29 Identities=21% Similarity=0.063 Sum_probs=25.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcC
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAASKAG 441 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~ 441 (976)
+.-|+|.|+||+||||+++.|+..++..+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 35689999999999999999999997654
No 406
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.53 E-value=0.021 Score=65.78 Aligned_cols=37 Identities=30% Similarity=0.371 Sum_probs=30.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEE
Q 002045 410 ITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSF 446 (976)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~ 446 (976)
+..+.-++|+||+|+||||+++.||..+...+..+.+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l 326 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVML 326 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEE
Confidence 4566789999999999999999999988765555544
No 407
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.53 E-value=0.0094 Score=61.51 Aligned_cols=27 Identities=33% Similarity=0.448 Sum_probs=24.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHh
Q 002045 412 PPRGVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~ 438 (976)
.+..|+|.|+||+||||+++.||..++
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346799999999999999999999885
No 408
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.53 E-value=0.0077 Score=60.43 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHh
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (976)
+..|+|+|+||+||||+++.|+..++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45699999999999999999999885
No 409
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.53 E-value=0.0066 Score=60.13 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 002045 414 RGVLLCGPPGTGKTLIARALAC 435 (976)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~ 435 (976)
..|+|+|+||+||||+++.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999998
No 410
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.52 E-value=0.0056 Score=61.35 Aligned_cols=31 Identities=16% Similarity=0.279 Sum_probs=26.1
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeec
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSL 735 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~ 735 (976)
.-++|+|+|||||||+|+.++..+ +.+++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l-~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF-GWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH-CCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh-CCeEeeH
Confidence 358899999999999999999987 5666554
No 411
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.51 E-value=0.0049 Score=63.78 Aligned_cols=30 Identities=13% Similarity=0.236 Sum_probs=25.0
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeee
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHS 734 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~ 734 (976)
..++|.|+||+||||+|+.|+..+ +..++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l-~~~~i~ 35 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY-QLAHIS 35 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH-CCEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-CCceec
Confidence 458999999999999999999998 444443
No 412
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.51 E-value=0.0038 Score=61.86 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=19.9
Q ss_pred ceeeccCCCCcHhhHHHHHHH
Q 002045 705 RLLLCGSEGTGVDHLGPAILH 725 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~ 725 (976)
-++|+|+||+||||+|+.++.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 488999999999999999998
No 413
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.51 E-value=0.0066 Score=60.94 Aligned_cols=27 Identities=44% Similarity=0.509 Sum_probs=23.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHH
Q 002045 410 ITPPRGVLLCGPPGTGKTLIARALACA 436 (976)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~ 436 (976)
+.++..++|+||||+||||+++.|+..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 456678999999999999999999976
No 414
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.51 E-value=0.039 Score=60.49 Aligned_cols=41 Identities=27% Similarity=0.203 Sum_probs=33.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEec
Q 002045 410 ITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (976)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~ 450 (976)
..++..++|+|++|+||||++..+|..+...+..+.++..+
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 35677899999999999999999999998777777665544
No 415
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.49 E-value=0.0059 Score=60.77 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=21.2
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCee
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVH 733 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~ 733 (976)
.-++|+|+|||||||+|+.+++.+ +.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l-~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL-PGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS-TTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc-CCCEE
Confidence 358899999999999999999987 66666
No 416
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.47 E-value=0.0059 Score=61.29 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=26.5
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCc
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLP 738 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~ 738 (976)
-++|+||||+||||++++|+..+ +.+.+.++..
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~~-~~g~i~i~~d 43 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANLP-GVPKVHFHSD 43 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCS-SSCEEEECTT
T ss_pred EEEEECCCCCCHHHHHHHHHhcc-CCCeEEEccc
Confidence 47899999999999999999974 5566666543
No 417
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.47 E-value=0.0085 Score=64.84 Aligned_cols=37 Identities=27% Similarity=0.331 Sum_probs=28.5
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccc
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALL 741 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~ 741 (976)
.-++|+||||+||||+|+.++..+. ..++.|+...+.
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~-~~~~~Is~D~~R 70 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQ-GNVIVIDNDTFK 70 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT-TCCEEECTHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC-CCeEEEechHhH
Confidence 3588999999999999999999873 346666654443
No 418
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=95.46 E-value=0.013 Score=60.39 Aligned_cols=56 Identities=20% Similarity=0.150 Sum_probs=30.7
Q ss_pred CCcccccChHHHHHHHHHHHHcccCChhHHhhcC---CCCCceEEEEcCCCChHHHHHHHHH
Q 002045 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYH---ITPPRGVLLCGPPGTGKTLIARALA 434 (976)
Q Consensus 376 ~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~---~~~~~~vLL~GppGtGKT~laralA 434 (976)
.+|+++.=.+.+++.|.+.-.. .+.-++... +....++++++|+|+|||+++-..+
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~---~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~ 62 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFY---KPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPI 62 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCC---SCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHH
T ss_pred CCHhhCCCCHHHHHHHHHCCCC---CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHH
Confidence 4577775555566666553211 111111100 0123679999999999998754433
No 419
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.46 E-value=0.0089 Score=60.69 Aligned_cols=26 Identities=46% Similarity=0.549 Sum_probs=23.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHh
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (976)
+..|+|+|+||+||||+++.|+..++
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999999885
No 420
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.45 E-value=0.0092 Score=58.75 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=23.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHh
Q 002045 414 RGVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~ 438 (976)
..|+|+|+||+||||+++.|+..++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999999985
No 421
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.45 E-value=0.068 Score=57.87 Aligned_cols=76 Identities=21% Similarity=0.182 Sum_probs=48.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchh--H---HhhhHh-------------HHHHHHHHHHHHH
Q 002045 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD--V---LSKWVG-------------EAERQLKLLFEEA 473 (976)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~--l---~~~~~g-------------~~~~~l~~~f~~a 473 (976)
++..+.|+|++|+||||++..+|..+...+..+.+...+... . +..+.. ......+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 456788999999999999999999988777667665543211 1 000100 0112234455555
Q ss_pred HhcCCcEEEEcccc
Q 002045 474 QRNQPSIIFFDEID 487 (976)
Q Consensus 474 ~~~~p~VL~iDEid 487 (976)
....+.+|+||+.-
T Consensus 177 ~~~~~D~viiDtpp 190 (295)
T 1ls1_A 177 RLEARDLILVDTAG 190 (295)
T ss_dssp HHHTCCEEEEECCC
T ss_pred HhCCCCEEEEeCCC
Confidence 54567799999863
No 422
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.45 E-value=0.0098 Score=59.52 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHh
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (976)
+..|+|+|+||+||||+++.++..++
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999999885
No 423
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.42 E-value=0.0079 Score=63.79 Aligned_cols=24 Identities=33% Similarity=0.392 Sum_probs=22.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHh
Q 002045 415 GVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (976)
.++|+||||+||||+|+.||..++
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 488999999999999999999885
No 424
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.42 E-value=0.0074 Score=60.28 Aligned_cols=26 Identities=38% Similarity=0.595 Sum_probs=23.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHh
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (976)
+..|+|+|+||+||||+++.|++.++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999999885
No 425
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.40 E-value=0.0072 Score=61.42 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=26.0
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeeecC
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLG 736 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~ 736 (976)
-++|+|+|||||||+|+.+++.+ +++++..+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~-g~~~i~~d 47 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY-SFVHLSAG 47 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS-SCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-CceEEeHH
Confidence 48899999999999999999987 66666544
No 426
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.39 E-value=0.0057 Score=63.11 Aligned_cols=31 Identities=29% Similarity=0.372 Sum_probs=26.8
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeeecC
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLG 736 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~ 736 (976)
.++|+|+|||||||+|+.|+..+ +++++.++
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~d 37 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY-GLAHLSTG 37 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH-CCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CceEEehh
Confidence 58999999999999999999998 66666653
No 427
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.39 E-value=0.0092 Score=60.17 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHh
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (976)
+..|+|+|+||+||||+++.|++.++
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999999985
No 428
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.38 E-value=0.0092 Score=60.63 Aligned_cols=26 Identities=31% Similarity=0.606 Sum_probs=23.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHh
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (976)
+..|+|+|++|+||||+++.|+..++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999999885
No 429
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.38 E-value=0.007 Score=62.86 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=23.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHh
Q 002045 411 TPPRGVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~ 438 (976)
..+..|+|+|+||+||||+++.||..++
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456799999999999999999999874
No 430
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.36 E-value=0.0083 Score=61.99 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=24.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHh
Q 002045 412 PPRGVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~ 438 (976)
.+..|+|.||||+||||+++.||+.++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346799999999999999999999985
No 431
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.34 E-value=0.05 Score=63.31 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=32.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEec
Q 002045 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (976)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~ 450 (976)
..+..|+|+|+||+||||++..||..+...+.++.++..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D 138 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD 138 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 3466899999999999999999999998877777766553
No 432
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.33 E-value=0.007 Score=62.25 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=26.2
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeeec
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSL 735 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~ 735 (976)
.++|+|+||+||||+|+.|+..+ +++++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY-GIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-CCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCeEEeH
Confidence 37899999999999999999988 6667665
No 433
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.33 E-value=0.013 Score=61.09 Aligned_cols=26 Identities=38% Similarity=0.469 Sum_probs=23.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHh
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (976)
+..|+|.|+||+||||+++.||+.++
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999999985
No 434
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.32 E-value=0.046 Score=64.32 Aligned_cols=83 Identities=23% Similarity=0.333 Sum_probs=54.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecch--hHHhhh--Hh----------------------HH
Q 002045 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA--DVLSKW--VG----------------------EA 462 (976)
Q Consensus 409 ~~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~--~l~~~~--~g----------------------~~ 462 (976)
++.+...++|.||+|+|||+|++.++..+...+..+.++..... .+.... +| ..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 56777889999999999999999999887655544433332211 111100 00 12
Q ss_pred HHHHHHHHHHHHhcCCcEEEEccccccCC
Q 002045 463 ERQLKLLFEEAQRNQPSIIFFDEIDGLAP 491 (976)
Q Consensus 463 ~~~l~~~f~~a~~~~p~VL~iDEid~L~~ 491 (976)
....+.++..+....|.+|+||-+..|-.
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~ 385 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALAR 385 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTS
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHh
Confidence 34555666777778899999997666654
No 435
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.32 E-value=0.01 Score=62.45 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=25.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHh
Q 002045 411 TPPRGVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~ 438 (976)
..+..|+|+||||+||||+++.|++.++
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567899999999999999999999884
No 436
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.31 E-value=0.0086 Score=59.23 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=24.2
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeee
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHS 734 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~ 734 (976)
.++|+|+||+||||++++++..+ +..++.
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~-g~~~i~ 38 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQL-HAAFLD 38 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH-TCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHhh-CcEEEe
Confidence 48899999999999999999987 544443
No 437
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.31 E-value=0.01 Score=60.27 Aligned_cols=28 Identities=39% Similarity=0.605 Sum_probs=24.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHh
Q 002045 411 TPPRGVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~ 438 (976)
.++..++|.||+|+||||++++|+..++
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 3456799999999999999999999884
No 438
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.29 E-value=0.051 Score=60.53 Aligned_cols=39 Identities=26% Similarity=0.376 Sum_probs=32.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEec
Q 002045 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (976)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~ 450 (976)
....|.|+|+||+||||++..++..+...+..+.++..+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 345799999999999999999999987777777666655
No 439
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.28 E-value=0.064 Score=55.35 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=31.2
Q ss_pred CCCCcccccC-hHHHHHHHHHHHHcccCChhHHhhcC---CCCCceEEEEcCCCChHHHHHHH
Q 002045 374 ESVSFDDIGG-LSEYIDALKEMVFFPLLYPDFFASYH---ITPPRGVLLCGPPGTGKTLIARA 432 (976)
Q Consensus 374 ~~~~~~~i~G-~~~~k~~l~~~v~~pl~~~~~~~~~~---~~~~~~vLL~GppGtGKT~lara 432 (976)
+..+|.+..+ ...+.+.|...-.. .+.-++... +...+++++.+|+|+|||+++-.
T Consensus 17 p~~~f~~~~~l~~~l~~~l~~~g~~---~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l 76 (228)
T 3iuy_A 17 PTCRFKDAFQQYPDLLKSIIRVGIL---KPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLM 76 (228)
T ss_dssp CCCSHHHHHTTCHHHHHHHHHHTCC---SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHH
T ss_pred ChhhHhhhhccCHHHHHHHHHCCCC---CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHH
Confidence 4567888434 34556666553211 111111100 12346899999999999986543
No 440
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.26 E-value=0.01 Score=62.50 Aligned_cols=27 Identities=26% Similarity=0.489 Sum_probs=24.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHh
Q 002045 412 PPRGVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~ 438 (976)
.+..++|.||+|+||||+++.|++.++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999999885
No 441
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.25 E-value=0.011 Score=58.48 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=23.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHh
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (976)
+..++|+||+|+||||+++.++..++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 45789999999999999999999874
No 442
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=95.24 E-value=0.09 Score=62.67 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=19.0
Q ss_pred ceeeccCCCCcHhhHHHHHHH
Q 002045 705 RLLLCGSEGTGVDHLGPAILH 725 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~ 725 (976)
-++|+|++|+|||+||..+++
T Consensus 149 ~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 149 WVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEcCCCCCHHHHHHHHHh
Confidence 488999999999999999875
No 443
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.21 E-value=0.0096 Score=61.40 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=23.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHh
Q 002045 414 RGVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~ 438 (976)
..|+|.|+||+||||+++.||..++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999999985
No 444
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.19 E-value=0.033 Score=56.13 Aligned_cols=68 Identities=12% Similarity=0.075 Sum_probs=39.8
Q ss_pred eeeccCCCCcHh-hHHHHHHHh-hcCCCeeecCCcccccCCCCCC-hH----------HHHHHHHHHHHhcCCceEeccc
Q 002045 706 LLLCGSEGTGVD-HLGPAILHE-LEKFPVHSLGLPALLSDPSAKT-PE----------EALVHIFGEARRTTPSILYIPQ 772 (976)
Q Consensus 706 ~Ll~G~pGtGKT-~lA~aia~~-l~~~~~~~~~~~~l~~~~~~g~-~e----------~~~~~~f~~a~~~~p~ilfiDE 772 (976)
.+++||.|+||| +|.+++.+. ..+..++.+... +=..|..+- +. .....++...+ ...||+|||
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~-~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~--~~DvIlIDE 99 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA-KDTRYSSSFCTHDRNTMEALPACLLRDVAQEAL--GVAVIGIDE 99 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET-TCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHH--TCSEEEESS
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc-cCccchhhhhhccCCcccceecCCHHHHHHhcc--CCCEEEEEc
Confidence 678899999999 899998875 334566666522 111111000 00 01122333333 247999999
Q ss_pred cchh
Q 002045 773 FNLW 776 (976)
Q Consensus 773 id~l 776 (976)
++-+
T Consensus 100 aQFf 103 (195)
T 1w4r_A 100 GQFF 103 (195)
T ss_dssp GGGC
T ss_pred hhhh
Confidence 9998
No 445
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.18 E-value=0.073 Score=55.56 Aligned_cols=56 Identities=14% Similarity=0.128 Sum_probs=31.4
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhHHhhcC---CCCCceEEEEcCCCChHHHHHHH
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYH---ITPPRGVLLCGPPGTGKTLIARA 432 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~~---~~~~~~vLL~GppGtGKT~lara 432 (976)
+..+|.++.-...+.+.|.+.- ...+.-+.... +....++++++|+|+|||+++-.
T Consensus 27 ~~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l 85 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVIARQN---FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLL 85 (242)
T ss_dssp CCSSTTTTTCCHHHHHHHHTTT---CCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHH
T ss_pred ccCCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHH
Confidence 3466777755555656555421 11111111100 11246899999999999987543
No 446
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.17 E-value=0.01 Score=60.17 Aligned_cols=33 Identities=12% Similarity=0.205 Sum_probs=27.3
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeeecC
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLG 736 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~ 736 (976)
.-++|+|++|+||||+++.++..+.+++++.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 358899999999999999999987456666554
No 447
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.16 E-value=0.025 Score=57.08 Aligned_cols=109 Identities=9% Similarity=0.065 Sum_probs=59.7
Q ss_pred ceeeccCCCCcHhhHHHHHHHhh--cCCCeeec---CCc------ccccCC-----------CCCC-----hHHHHHHHH
Q 002045 705 RLLLCGSEGTGVDHLGPAILHEL--EKFPVHSL---GLP------ALLSDP-----------SAKT-----PEEALVHIF 757 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l--~~~~~~~~---~~~------~l~~~~-----------~~g~-----~e~~~~~~f 757 (976)
.+++++++|.||||+|-.+|... .+..++.+ ... .++... ...+ .+......+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 58899999999999998887752 23444444 210 122111 0001 123445566
Q ss_pred HHHHh----cCCceEeccccchhHHHHHHHHHHHHHHHHhhCCCCCCEEEEEecCCCcccCcC
Q 002045 758 GEARR----TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEG 816 (976)
Q Consensus 758 ~~a~~----~~p~ilfiDEid~l~~~~~~~~~~~l~~ll~~~~~~~~v~vi~ttn~~~~~Ld~ 816 (976)
..++. ....+|+|||+-....-.-- -...++.+|..-+. .+-||.|+|.++..|-+
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~l-~~~ev~~~l~~Rp~--~~~vIlTGr~ap~~l~e 169 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDYL-PLEEVISALNARPG--HQTVIITGRGCHRDILD 169 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTSS-CHHHHHHHHHTSCT--TCEEEEECSSCCHHHHH
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCCC-CHHHHHHHHHhCcC--CCEEEEECCCCcHHHHH
Confidence 66655 34689999999764321000 01124555654332 44556688877565543
No 448
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.16 E-value=0.026 Score=64.25 Aligned_cols=76 Identities=17% Similarity=0.215 Sum_probs=43.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHHh----hhHh-HHHHHHHHHHHHHHhcCCcEEEEccc
Q 002045 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS----KWVG-EAERQLKLLFEEAQRNQPSIIFFDEI 486 (976)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~~----~~~g-~~~~~l~~~f~~a~~~~p~VL~iDEi 486 (976)
+...++|+||+|+||||++++++..+......+.+..-...-... ..+. .........+..+....|.++++.|+
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 344689999999999999999999886443344443322110000 0000 00011223334445567999999997
Q ss_pred c
Q 002045 487 D 487 (976)
Q Consensus 487 d 487 (976)
-
T Consensus 246 R 246 (418)
T 1p9r_A 246 R 246 (418)
T ss_dssp C
T ss_pred C
Confidence 3
No 449
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.15 E-value=0.004 Score=68.80 Aligned_cols=73 Identities=16% Similarity=0.268 Sum_probs=44.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecchhHH-----hh---hHhHHHHHHHHHHHHHHhcCCcEEEE
Q 002045 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVL-----SK---WVGEAERQLKLLFEEAQRNQPSIIFF 483 (976)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~~~l~-----~~---~~g~~~~~l~~~f~~a~~~~p~VL~i 483 (976)
+...++|+||+|+||||++++++..+......+ .+.+...+ .. ++.......+..+..+....|.+|++
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i---~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilil 246 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERII---SIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIIL 246 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEE---EEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEE---EECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEE
Confidence 346799999999999999999998764322122 22221100 00 11001123345556666778999999
Q ss_pred cccc
Q 002045 484 DEID 487 (976)
Q Consensus 484 DEid 487 (976)
||+-
T Consensus 247 dE~~ 250 (330)
T 2pt7_A 247 GELR 250 (330)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9984
No 450
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.14 E-value=0.011 Score=66.10 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHH
Q 002045 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (976)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (976)
+.+..-+.|.||+|||||||.++||...
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3556678899999999999999999765
No 451
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.14 E-value=0.017 Score=59.18 Aligned_cols=31 Identities=19% Similarity=0.208 Sum_probs=26.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHh-hcC
Q 002045 411 TPPRGVLLCGPPGTGKTLIARALACAAS-KAG 441 (976)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~-~~~ 441 (976)
..+..|+|.|++|+||||+++.|+..+. ..+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g 54 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRR 54 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 4567899999999999999999999986 444
No 452
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.14 E-value=0.088 Score=60.16 Aligned_cols=76 Identities=21% Similarity=0.261 Sum_probs=51.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhc-CCcEEEEEecchh--HHh---hhH---h----------HHHHHHHHHHH
Q 002045 411 TPPRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYMRKGAD--VLS---KWV---G----------EAERQLKLLFE 471 (976)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~~~~~~--l~~---~~~---g----------~~~~~l~~~f~ 471 (976)
.+++.|+|+|++|+||||++-.||..+... +..+.++..+... ... .+. + .....+...+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 356789999999999999999999999887 8888777665411 000 000 0 11223355566
Q ss_pred HHHhcCCcEEEEccc
Q 002045 472 EAQRNQPSIIFFDEI 486 (976)
Q Consensus 472 ~a~~~~p~VL~iDEi 486 (976)
.+......++|||=.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 666555679999875
No 453
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.09 E-value=0.017 Score=61.37 Aligned_cols=28 Identities=32% Similarity=0.374 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHH
Q 002045 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (976)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (976)
+.+..-+.|.||+|+|||||+++|+..+
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566778999999999999999998764
No 454
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.08 E-value=0.0082 Score=66.86 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHH
Q 002045 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (976)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (976)
+.+..-+.|.||+|+|||||+++|+..+
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 4566678899999999999999998654
No 455
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=95.08 E-value=0.049 Score=56.43 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=32.1
Q ss_pred CCCCcccccChHHHHHHHHHHHHc-ccCCh-hHHhhcCCCCCceEEEEcCCCChHHHHHH
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFF-PLLYP-DFFASYHITPPRGVLLCGPPGTGKTLIAR 431 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~-pl~~~-~~~~~~~~~~~~~vLL~GppGtGKT~lar 431 (976)
+..+|+++.-...+++.|.+.-.. |..++ +.+.. +....++++++|+|+|||+++-
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~l~~a~TGsGKT~~~~ 79 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPL--GRCGLDLIVQAKSGTGKTCVFS 79 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSSHHHHHH
T ss_pred CCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCCCcHHHHHH
Confidence 456788886666677777653211 11111 11111 1224689999999999998743
No 456
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.08 E-value=0.011 Score=63.32 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=23.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHH
Q 002045 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (976)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (976)
+.+..-+.|.||+|+|||||+++|+..+
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3556678999999999999999998654
No 457
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.07 E-value=0.0074 Score=60.04 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=19.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHh
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (976)
+..|+|+|+||+||||+++.|++.++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999999875
No 458
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.07 E-value=0.021 Score=65.93 Aligned_cols=32 Identities=9% Similarity=0.166 Sum_probs=23.9
Q ss_pred ceeeccCCCCcHhhHHHHHHHhh---cCCCeeecC
Q 002045 705 RLLLCGSEGTGVDHLGPAILHEL---EKFPVHSLG 736 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l---~~~~~~~~~ 736 (976)
-++|+|+||+|||+++..++..+ .+.+++.++
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 38899999999999999888753 233554443
No 459
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.06 E-value=0.013 Score=59.49 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHh
Q 002045 412 PPRGVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~ 438 (976)
.+..|+|+|+||+||||+++.|++.++
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 345799999999999999999998874
No 460
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.05 E-value=0.026 Score=62.37 Aligned_cols=48 Identities=23% Similarity=0.261 Sum_probs=33.7
Q ss_pred cChHHHHHHHHHHHHcccCChhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHh
Q 002045 382 GGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 382 ~G~~~~k~~l~~~v~~pl~~~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~l~ 438 (976)
++.+.+.+.+...+...+. -....+|+|+||||+|||+++++||..++
T Consensus 2 ~~~~~L~~~il~~l~~~i~---------~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE---------DNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT---------TCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc---------cCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4556666666555543211 12234699999999999999999999986
No 461
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=95.05 E-value=0.037 Score=60.11 Aligned_cols=54 Identities=22% Similarity=0.324 Sum_probs=32.1
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhH-----HhhcCCCCCceEEEEcCCCChHHHHHH
Q 002045 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDF-----FASYHITPPRGVLLCGPPGTGKTLIAR 431 (976)
Q Consensus 375 ~~~~~~i~G~~~~k~~l~~~v~~pl~~~~~-----~~~~~~~~~~~vLL~GppGtGKT~lar 431 (976)
..+|+++.-...+.+.|..+- + ..|.- +..+-..+++++++++|+|+|||++.-
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~g-~--~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~ 149 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAMG-F--NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 149 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHTT-C--CSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHcC-C--CCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHH
Confidence 457888766666666665531 1 11111 111111235789999999999998643
No 462
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.04 E-value=0.06 Score=67.05 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=22.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHH
Q 002045 410 ITPPRGVLLCGPPGTGKTLIARALACA 436 (976)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~ 436 (976)
+....-++|+||.|+||||+.+.++..
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 345667999999999999999998754
No 463
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.04 E-value=0.058 Score=58.48 Aligned_cols=38 Identities=39% Similarity=0.441 Sum_probs=32.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEec
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~ 450 (976)
+..++|+|++|+||||++..+|..+...+..+.++..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 66788999999999999999999998777777766554
No 464
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.03 E-value=0.01 Score=60.73 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=21.9
Q ss_pred CceeeccCCCCcHhhHHHHHHHhh
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHEL 727 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l 727 (976)
.-|+|+|+|||||||+|+.++..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 458899999999999999999986
No 465
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.03 E-value=0.18 Score=57.27 Aligned_cols=39 Identities=26% Similarity=0.239 Sum_probs=32.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEec
Q 002045 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (976)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~ 450 (976)
++..++|+|++|+||||++..+|..+...+..+.++..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 566788999999999999999999998777777666554
No 466
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.01 E-value=0.013 Score=57.40 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=22.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHh
Q 002045 415 GVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (976)
.|+|+|+||+||||+++.|+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999885
No 467
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.00 E-value=0.012 Score=60.06 Aligned_cols=29 Identities=21% Similarity=0.526 Sum_probs=25.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHHh
Q 002045 410 ITPPRGVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~ 438 (976)
+..+.-|+|+||||+||||+++.|+..+.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45567899999999999999999998873
No 468
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.98 E-value=0.019 Score=58.75 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=26.6
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc---CCCeeecCC
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE---KFPVHSLGL 737 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~---~~~~~~~~~ 737 (976)
-++|+|++|+||||+++.|+..+. +.+++.++.
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 478999999999999999999864 344666664
No 469
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.98 E-value=0.05 Score=55.22 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=28.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEE
Q 002045 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (976)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (976)
..+.-+.|.|++|+||||+++.++..+...+..+.+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 4456789999999999999999999886544444433
No 470
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.98 E-value=0.024 Score=65.29 Aligned_cols=32 Identities=9% Similarity=0.077 Sum_probs=23.7
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc---CCCeeecC
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE---KFPVHSLG 736 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~---~~~~~~~~ 736 (976)
-++|+|+||+|||++|..+|.... +.+++.++
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s 236 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS 236 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 378999999999999998887531 34554443
No 471
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.98 E-value=0.015 Score=65.30 Aligned_cols=42 Identities=14% Similarity=0.214 Sum_probs=32.3
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeeecCCcccccCCCCC
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAK 747 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~~~~l~~~~~~g 747 (976)
-++|.||+|+|||+||..||..+ +..+++.+.-.++.+..+|
T Consensus 4 ~i~i~GptgsGKttla~~La~~~-~~~iis~Ds~QvYr~l~i~ 45 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKF-NGEVINSDSMQVYKDIPII 45 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH-TEEEEECCTTTTBSSCTTT
T ss_pred EEEEECcchhhHHHHHHHHHHHC-CCeEeecCccceecccccc
Confidence 47899999999999999999998 4567777655555544444
No 472
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.97 E-value=0.015 Score=57.99 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHH
Q 002045 412 PPRGVLLCGPPGTGKTLIARALACAA 437 (976)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l 437 (976)
.+.-+.|+||+|+|||||++.|+..+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34578999999999999999999875
No 473
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.97 E-value=0.023 Score=58.12 Aligned_cols=41 Identities=32% Similarity=0.444 Sum_probs=31.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecc
Q 002045 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (976)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~ 451 (976)
.++.-+.|.||+|+|||||+++|+..+...+....++.+++
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 45667889999999999999999999864333355555544
No 474
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.97 E-value=0.013 Score=58.76 Aligned_cols=31 Identities=16% Similarity=0.267 Sum_probs=26.4
Q ss_pred eeeccCCCCcHhhHHHHHHHhh--cCCCeeecC
Q 002045 706 LLLCGSEGTGVDHLGPAILHEL--EKFPVHSLG 736 (976)
Q Consensus 706 ~Ll~G~pGtGKT~lA~aia~~l--~~~~~~~~~ 736 (976)
++|+|+|||||||+|+.++..+ .+++++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7899999999999999999987 366777654
No 475
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.97 E-value=0.013 Score=60.21 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=22.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHh
Q 002045 415 GVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (976)
.|+|.||||+||||+++.|+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999885
No 476
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.97 E-value=0.062 Score=63.26 Aligned_cols=92 Identities=15% Similarity=0.156 Sum_probs=53.0
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc--CCCeeecCCcc--------------------------cccCCC-CCChHHHHHH
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPA--------------------------LLSDPS-AKTPEEALVH 755 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~--~~~~~~~~~~~--------------------------l~~~~~-~g~~e~~~~~ 755 (976)
-++|.|+||+|||+|+++++..+. +-.++.+...+ +...+. .=+.++..+.
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~~q~~ 362 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQI 362 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHHHHHH
Confidence 488999999999999999987642 22233322110 000000 0023456666
Q ss_pred HHHHHHhcCCceEeccccchhHHH-HHHHHHHHHHHHHhhCC
Q 002045 756 IFGEARRTTPSILYIPQFNLWWEN-AHEQLRAVLLTLLEELP 796 (976)
Q Consensus 756 ~f~~a~~~~p~ilfiDEid~l~~~-~~~~~~~~l~~ll~~~~ 796 (976)
++..+....|.+|+||=+..+... ...+....+..++..+.
T Consensus 363 ~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~ 404 (525)
T 1tf7_A 363 IKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAK 404 (525)
T ss_dssp HHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHH
Confidence 777788888999999966655433 11124444444554443
No 477
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.95 E-value=0.013 Score=64.69 Aligned_cols=30 Identities=20% Similarity=0.381 Sum_probs=25.6
Q ss_pred CceeeccCCCCcHhhHHHHHHHhhcCCCeee
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHS 734 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~ 734 (976)
+.++|+|+||+|||+++++||..+ +.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l-~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQII-NEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH-HHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh-CCCeee
Confidence 358999999999999999999987 566644
No 478
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.95 E-value=0.011 Score=61.15 Aligned_cols=29 Identities=17% Similarity=0.361 Sum_probs=25.1
Q ss_pred eeeccCCCCcHhhHHHHHHHhhcCCCeeec
Q 002045 706 LLLCGSEGTGVDHLGPAILHELEKFPVHSL 735 (976)
Q Consensus 706 ~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~ 735 (976)
++|.|+||+||||+|+.|+..+ +++++..
T Consensus 3 I~l~G~~GsGKsT~a~~La~~l-g~~~i~~ 31 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKY-SLAHIES 31 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH-TCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHh-CCeEEch
Confidence 7899999999999999999988 5655554
No 479
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.90 E-value=0.048 Score=62.38 Aligned_cols=39 Identities=33% Similarity=0.369 Sum_probs=32.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEec
Q 002045 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (976)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~ 450 (976)
.+..|+|+|++|+||||++..||..+...+..+.++..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 356899999999999999999999987777667665443
No 480
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.89 E-value=0.019 Score=62.62 Aligned_cols=29 Identities=34% Similarity=0.533 Sum_probs=25.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHH
Q 002045 409 HITPPRGVLLCGPPGTGKTLIARALACAA 437 (976)
Q Consensus 409 ~~~~~~~vLL~GppGtGKT~laralA~~l 437 (976)
.+.+...+.|+||+|+|||||+++|+..+
T Consensus 76 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 76 TVMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 35677789999999999999999998765
No 481
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.88 E-value=0.062 Score=63.00 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=27.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCCcEE
Q 002045 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVS 445 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~ 445 (976)
+.-|+|+|.||+||||+++.||..++..+..+.
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~ 67 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTK 67 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeE
Confidence 457899999999999999999999987664443
No 482
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=94.86 E-value=0.049 Score=61.24 Aligned_cols=61 Identities=21% Similarity=0.159 Sum_probs=34.0
Q ss_pred CCCCcccccChHHHHHHHHHHHHc-ccCC-hhHHhhcCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFF-PLLY-PDFFASYHITPPRGVLLCGPPGTGKTLIARALACA 436 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~-pl~~-~~~~~~~~~~~~~~vLL~GppGtGKT~laralA~~ 436 (976)
...+|+++.=...+++.|...-.. |..+ .+.+..+ -...++++.+|+|+|||+++-..+-.
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i--~~~~~~li~a~TGsGKT~~~~~~~~~ 81 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVA--ITGRDILARAKNGTGKTAAFVIPTLE 81 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHH--HHTCCEEEECCTTSCHHHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH--hcCCCEEEECCCCcHHHHHHHHHHHH
Confidence 345788887666677776653211 1000 0111111 12357999999999999876554443
No 483
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.85 E-value=0.012 Score=60.52 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHh
Q 002045 415 GVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (976)
.|+|+||||+||||+++.|+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998874
No 484
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.85 E-value=0.041 Score=59.86 Aligned_cols=37 Identities=30% Similarity=0.411 Sum_probs=29.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEE
Q 002045 410 ITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSF 446 (976)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~ 446 (976)
+.++.-+.|+||+|+||||+++.+|..+...+..+.+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l 133 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLM 133 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 4566789999999999999999999988655545544
No 485
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.84 E-value=0.016 Score=58.81 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=23.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHH
Q 002045 411 TPPRGVLLCGPPGTGKTLIARALACAA 437 (976)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l 437 (976)
.++..+.|+||+|+||||+++.|+..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 456679999999999999999999876
No 486
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.84 E-value=0.018 Score=57.59 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=23.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHhhcC
Q 002045 415 GVLLCGPPGTGKTLIARALACAASKAG 441 (976)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~~~~ 441 (976)
.|+|.|+||+||||+++.+++.+...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g 28 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKG 28 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 488999999999999999999985444
No 487
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=94.83 E-value=0.015 Score=59.27 Aligned_cols=23 Identities=17% Similarity=0.486 Sum_probs=19.4
Q ss_pred CceeeccCCCCcHhhHHHHHHHh
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHE 726 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~ 726 (976)
..+|+++|+|+|||+++-.++..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999988777654
No 488
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.82 E-value=0.023 Score=57.03 Aligned_cols=29 Identities=34% Similarity=0.437 Sum_probs=24.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcCCcE
Q 002045 416 VLLCGPPGTGKTLIARALACAASKAGQKV 444 (976)
Q Consensus 416 vLL~GppGtGKT~laralA~~l~~~~~~~ 444 (976)
|.|.|++||||||+++.+++.+...+..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v 31 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKV 31 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-E
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 78999999999999999999986555433
No 489
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.80 E-value=0.016 Score=58.90 Aligned_cols=24 Identities=17% Similarity=0.418 Sum_probs=21.8
Q ss_pred CceeeccCCCCcHhhHHHHHHHhh
Q 002045 704 PRLLLCGSEGTGVDHLGPAILHEL 727 (976)
Q Consensus 704 ~~~Ll~G~pGtGKT~lA~aia~~l 727 (976)
.-++|+|++|+||||++++|+..+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh
Confidence 348899999999999999999987
No 490
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.78 E-value=0.014 Score=58.93 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=22.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHh
Q 002045 415 GVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (976)
.|+|.|++|+||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 488999999999999999999986
No 491
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.76 E-value=0.028 Score=55.73 Aligned_cols=38 Identities=32% Similarity=0.375 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecc
Q 002045 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (976)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~ 451 (976)
.+..|+|+|++|+||||+++.++..+...+ .+++.+++
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g--~~~i~~d~ 41 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHG--IPCYTLDG 41 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCC--CcEEEECC
Confidence 456789999999999999999999884433 33444443
No 492
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.74 E-value=0.014 Score=58.96 Aligned_cols=27 Identities=19% Similarity=0.492 Sum_probs=23.4
Q ss_pred eeeccCCCCcHhhHHHHHHHhhcCCCee
Q 002045 706 LLLCGSEGTGVDHLGPAILHELEKFPVH 733 (976)
Q Consensus 706 ~Ll~G~pGtGKT~lA~aia~~l~~~~~~ 733 (976)
++|.|++||||||+++.|++.+ +..++
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l-~~~~~ 29 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKL-GYEIF 29 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH-CCEEE
T ss_pred EEEECCCccCHHHHHHHHHHhc-CCcEE
Confidence 7899999999999999999998 44443
No 493
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=94.73 E-value=0.038 Score=62.40 Aligned_cols=56 Identities=21% Similarity=0.177 Sum_probs=31.4
Q ss_pred CCcccccChHHHHHHHHHHHHcccCChhHHhhc---CCCCCceEEEEcCCCChHHHHHHHHH
Q 002045 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASY---HITPPRGVLLCGPPGTGKTLIARALA 434 (976)
Q Consensus 376 ~~~~~i~G~~~~k~~l~~~v~~pl~~~~~~~~~---~~~~~~~vLL~GppGtGKT~laralA 434 (976)
.+|+++.=...+++.|...-. ..+.-++.. .+-...++++.+|+|+|||+++-..+
T Consensus 40 ~~f~~~~l~~~~~~~l~~~~~---~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~ 98 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAYGF---EKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISI 98 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHTTC---CSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHcCC---CCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHH
Confidence 467776655666666655311 111111110 01224579999999999998755443
No 494
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.73 E-value=0.016 Score=59.86 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=24.8
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeee
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHS 734 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~ 734 (976)
.+.|.|++||||||+|+.|+..+ +++++.
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~-g~~~~d 35 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL-QWHLLD 35 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH-TCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCCccc
Confidence 58899999999999999999987 555554
No 495
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.72 E-value=0.092 Score=58.01 Aligned_cols=42 Identities=29% Similarity=0.341 Sum_probs=32.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCcEEEEEecc
Q 002045 410 ITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (976)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~~~~ 451 (976)
+.....+.|.||||+|||||+++++..+...+..+.+...+.
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~ 93 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDP 93 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcC
Confidence 345667889999999999999999988865555666665554
No 496
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.72 E-value=0.012 Score=58.81 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=21.9
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhc
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELE 728 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~ 728 (976)
-++|+|+|||||||+|+.|++.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999874
No 497
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.71 E-value=0.14 Score=63.89 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=20.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 002045 413 PRGVLLCGPPGTGKTLIARALACA 436 (976)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~ 436 (976)
..-++|+||.|+||||+.+.+|..
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial~ 685 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGVI 685 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999998543
No 498
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.70 E-value=0.011 Score=59.93 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=25.7
Q ss_pred ceeeccCCCCcHhhHHHHHHHhhcCCCeeecC
Q 002045 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLG 736 (976)
Q Consensus 705 ~~Ll~G~pGtGKT~lA~aia~~l~~~~~~~~~ 736 (976)
.+.|+|++||||||+++.|+. + +++++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~-g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L-GAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T-TCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-C-CCEEEEcc
Confidence 478999999999999999999 6 66676655
No 499
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=94.68 E-value=0.057 Score=60.40 Aligned_cols=57 Identities=19% Similarity=0.086 Sum_probs=32.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccC-C-hhHHhhcCCCCCceEEEEcCCCChHHHHHHH
Q 002045 374 ESVSFDDIGGLSEYIDALKEMVFFPLL-Y-PDFFASYHITPPRGVLLCGPPGTGKTLIARA 432 (976)
Q Consensus 374 ~~~~~~~i~G~~~~k~~l~~~v~~pl~-~-~~~~~~~~~~~~~~vLL~GppGtGKT~lara 432 (976)
+..+|+++.=.+.+.+.|...-...+. + .+.+..+ -...++++.+|+|+|||+++-.
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i--~~~~~~lv~~~TGsGKT~~~~~ 77 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPI--IEGHDVLAQAQSGTGKTGTFSI 77 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHH--HHTCCEEECCCSSHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHH--hCCCCEEEECCCCChHHHHHHH
Confidence 346788886666666666654211110 0 0111111 1235799999999999987543
No 500
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.68 E-value=0.025 Score=58.29 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=23.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHh
Q 002045 414 RGVLLCGPPGTGKTLIARALACAAS 438 (976)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~ 438 (976)
..|.|.||+||||||+++.|+..++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999885
Done!