Query 002047
Match_columns 975
No_of_seqs 712 out of 4766
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 15:19:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002047.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002047hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0372 Serine/threonine speci 100.0 2.7E-76 5.9E-81 591.1 16.7 288 648-959 3-290 (303)
2 KOG0374 Serine/threonine speci 100.0 6.2E-70 1.3E-74 597.2 26.2 296 647-955 8-304 (331)
3 KOG0373 Serine/threonine speci 100.0 5.2E-69 1.1E-73 529.2 17.2 287 648-958 6-293 (306)
4 PTZ00480 serine/threonine-prot 100.0 3.3E-67 7.1E-72 574.1 29.0 295 648-958 11-305 (320)
5 cd07420 MPP_RdgC Drosophila me 100.0 1E-66 2.2E-71 571.4 30.2 286 646-951 5-320 (321)
6 cd07419 MPP_Bsu1_C Arabidopsis 100.0 1.5E-66 3.3E-71 574.5 29.6 303 651-953 1-311 (311)
7 cd07415 MPP_PP2A_PP4_PP6 PP2A, 100.0 1.6E-65 3.4E-70 557.7 29.3 284 648-955 2-285 (285)
8 PTZ00244 serine/threonine-prot 100.0 1E-65 2.2E-70 560.0 27.7 291 646-952 2-292 (294)
9 cd07414 MPP_PP1_PPKL PP1, PPKL 100.0 1.2E-65 2.7E-70 560.6 27.2 291 648-954 2-292 (293)
10 PTZ00239 serine/threonine prot 100.0 3.5E-65 7.7E-70 557.4 30.5 287 648-958 3-290 (303)
11 cd07417 MPP_PP5_C PP5, C-termi 100.0 2.9E-64 6.4E-69 554.0 28.2 293 645-961 13-311 (316)
12 cd07416 MPP_PP2B PP2B, metallo 100.0 2.7E-63 5.9E-68 545.9 30.6 287 649-958 4-301 (305)
13 smart00156 PP2Ac Protein phosp 100.0 3.2E-63 6.9E-68 538.3 27.7 269 671-953 1-269 (271)
14 cd07418 MPP_PP7 PP7, metalloph 100.0 2.9E-61 6.2E-66 534.7 30.4 299 646-954 10-366 (377)
15 KOG0371 Serine/threonine prote 100.0 1.7E-60 3.6E-65 480.6 12.6 285 648-956 20-304 (319)
16 KOG0375 Serine-threonine phosp 100.0 3.2E-60 6.9E-65 495.9 11.9 275 670-957 60-345 (517)
17 KOG0377 Protein serine/threoni 100.0 1.6E-52 3.6E-57 447.6 13.3 280 648-948 121-426 (631)
18 KOG0376 Serine-threonine phosp 100.0 2.5E-45 5.3E-50 405.5 13.1 277 671-961 183-465 (476)
19 PLN02153 epithiospecifier prot 100.0 6.1E-37 1.3E-41 347.5 38.1 305 80-439 11-339 (341)
20 PLN02193 nitrile-specifier pro 100.0 8.8E-37 1.9E-41 359.3 39.1 304 80-439 154-468 (470)
21 KOG4693 Uncharacterized conser 100.0 2.4E-37 5.3E-42 314.2 24.4 300 90-443 12-349 (392)
22 KOG4441 Proteins containing BT 100.0 1.7E-34 3.7E-39 344.2 31.0 264 113-440 284-547 (571)
23 PLN02193 nitrile-specifier pro 100.0 4.7E-33 1E-37 327.7 36.4 277 113-442 120-413 (470)
24 KOG4152 Host cell transcriptio 100.0 3.1E-33 6.8E-38 304.5 22.2 309 78-440 19-364 (830)
25 TIGR03547 muta_rot_YjhT mutatr 100.0 6.7E-32 1.5E-36 307.0 32.8 277 86-437 2-344 (346)
26 PHA02713 hypothetical protein; 100.0 1.1E-31 2.4E-36 321.3 30.9 245 150-440 272-534 (557)
27 TIGR03548 mutarot_permut cycli 100.0 5.2E-31 1.1E-35 296.8 32.6 284 90-433 2-322 (323)
28 KOG1230 Protein containing rep 100.0 4E-32 8.8E-37 291.2 22.1 266 80-379 55-348 (521)
29 PRK14131 N-acetylneuraminic ac 100.0 7.5E-31 1.6E-35 301.3 31.7 285 82-440 19-369 (376)
30 KOG4441 Proteins containing BT 100.0 2.3E-31 4.9E-36 317.4 28.2 249 75-381 306-556 (571)
31 KOG0379 Kelch repeat-containin 100.0 4.1E-31 8.8E-36 310.6 29.9 297 83-439 52-357 (482)
32 PLN02153 epithiospecifier prot 100.0 1.7E-30 3.7E-35 294.8 32.7 257 158-441 5-286 (341)
33 PHA02713 hypothetical protein; 100.0 1.3E-30 2.9E-35 312.0 26.3 248 75-381 277-543 (557)
34 KOG4693 Uncharacterized conser 100.0 8.1E-31 1.7E-35 266.8 19.8 229 86-353 73-312 (392)
35 cd00144 MPP_PPP_family phospho 100.0 5.3E-30 1.1E-34 273.5 19.2 218 701-939 1-224 (225)
36 PHA03098 kelch-like protein; P 100.0 1.2E-28 2.7E-33 296.3 29.7 248 151-440 265-512 (534)
37 KOG0379 Kelch repeat-containin 100.0 2.1E-28 4.6E-33 287.7 28.0 246 167-440 53-302 (482)
38 PHA03098 kelch-like protein; P 100.0 6.1E-28 1.3E-32 290.3 30.2 242 83-381 277-521 (534)
39 TIGR03548 mutarot_permut cycli 100.0 1E-26 2.2E-31 261.9 28.1 226 82-356 53-316 (323)
40 PHA02790 Kelch-like protein; P 99.9 5.7E-26 1.2E-30 268.3 28.5 207 113-378 271-477 (480)
41 PRK14131 N-acetylneuraminic ac 99.9 2.6E-25 5.6E-30 255.5 26.9 251 83-377 65-374 (376)
42 TIGR03547 muta_rot_YjhT mutatr 99.9 9.1E-25 2E-29 248.5 27.8 222 171-425 4-267 (346)
43 KOG1230 Protein containing rep 99.9 3.2E-25 7E-30 238.4 20.7 245 170-440 62-341 (521)
44 PHA02790 Kelch-like protein; P 99.9 1.4E-24 3.1E-29 256.4 28.4 205 180-440 267-471 (480)
45 KOG4152 Host cell transcriptio 99.9 2.3E-25 5.1E-30 243.3 17.4 255 80-371 70-363 (830)
46 PRK13625 bis(5'-nucleosyl)-tet 99.9 2.4E-22 5.1E-27 216.7 12.4 131 698-830 1-145 (245)
47 cd07425 MPP_Shelphs Shewanella 99.9 5E-22 1.1E-26 208.6 13.9 185 701-924 1-196 (208)
48 PRK00166 apaH diadenosine tetr 99.8 4.4E-21 9.5E-26 208.4 13.4 206 698-924 1-246 (275)
49 cd07422 MPP_ApaH Escherichia c 99.8 1.2E-21 2.5E-26 210.6 7.7 177 700-895 1-188 (257)
50 cd07423 MPP_PrpE Bacillus subt 99.8 6.4E-21 1.4E-25 204.5 10.9 130 698-830 1-142 (234)
51 TIGR00668 apaH bis(5'-nucleosy 99.8 6.8E-21 1.5E-25 204.4 9.2 194 698-911 1-208 (279)
52 cd07413 MPP_PA3087 Pseudomonas 99.8 8E-20 1.7E-24 194.0 15.9 123 701-828 2-143 (222)
53 cd07421 MPP_Rhilphs Rhilph pho 99.8 1.2E-18 2.6E-23 186.7 16.3 82 699-780 3-85 (304)
54 PRK11439 pphA serine/threonine 99.8 2.7E-19 5.9E-24 189.7 11.0 120 698-828 17-146 (218)
55 cd07424 MPP_PrpA_PrpB PrpA and 99.8 1.2E-18 2.5E-23 183.6 12.7 147 698-862 1-157 (207)
56 PHA02239 putative protein phos 99.8 2.3E-18 5E-23 183.5 14.4 125 698-830 1-168 (235)
57 PRK09968 serine/threonine-spec 99.7 7.8E-18 1.7E-22 178.3 9.9 120 698-828 15-144 (218)
58 COG3055 Uncharacterized protei 99.7 7.2E-16 1.6E-20 165.4 23.9 283 83-437 28-372 (381)
59 KOG2437 Muskelin [Signal trans 99.5 3.3E-15 7E-20 164.5 2.9 317 85-439 254-612 (723)
60 COG3055 Uncharacterized protei 99.5 3.9E-12 8.4E-17 137.0 19.9 242 82-368 72-371 (381)
61 KOG2437 Muskelin [Signal trans 99.3 1.1E-12 2.3E-17 144.9 4.0 211 212-437 238-469 (723)
62 PF00149 Metallophos: Calcineu 98.9 3.8E-09 8.3E-14 105.5 10.8 77 699-781 2-84 (200)
63 PF13964 Kelch_6: Kelch motif 98.8 1.9E-08 4.2E-13 80.6 6.8 50 91-175 1-50 (50)
64 PF13964 Kelch_6: Kelch motif 98.7 1.7E-08 3.7E-13 80.9 6.0 50 174-228 1-50 (50)
65 cd00841 MPP_YfcE Escherichia c 98.7 3.5E-07 7.7E-12 91.7 16.1 59 699-775 1-59 (155)
66 PLN02772 guanylate kinase 98.7 8.1E-08 1.7E-12 108.2 12.0 93 84-211 17-110 (398)
67 PLN02772 guanylate kinase 98.7 7E-08 1.5E-12 108.7 11.1 89 172-264 22-110 (398)
68 COG0639 ApaH Diadenosine tetra 98.7 2.5E-08 5.3E-13 98.4 6.3 147 776-929 2-155 (155)
69 PRK09453 phosphodiesterase; Pr 98.7 6.4E-08 1.4E-12 100.0 9.6 69 698-776 1-77 (182)
70 PF12850 Metallophos_2: Calcin 98.7 2.9E-07 6.2E-12 92.0 13.1 152 698-941 1-152 (156)
71 PF13415 Kelch_3: Galactose ox 98.6 1E-07 2.2E-12 76.1 6.4 49 113-183 1-49 (49)
72 TIGR00040 yfcE phosphoesterase 98.6 1E-06 2.2E-11 88.8 15.2 62 698-774 1-63 (158)
73 PF13418 Kelch_4: Galactose ox 98.5 1.2E-07 2.7E-12 75.5 4.1 47 91-168 1-47 (49)
74 PF13415 Kelch_3: Galactose ox 98.5 2.6E-07 5.6E-12 73.7 5.8 48 184-236 1-49 (49)
75 PF07646 Kelch_2: Kelch motif; 98.5 3.5E-07 7.5E-12 73.0 6.4 47 333-381 1-48 (49)
76 cd07379 MPP_239FB Homo sapiens 98.4 9.3E-07 2E-11 86.6 10.0 118 699-911 1-120 (135)
77 PF13418 Kelch_4: Galactose ox 98.4 1.8E-07 3.9E-12 74.5 4.0 46 227-274 1-47 (49)
78 PF07646 Kelch_2: Kelch motif; 98.4 6.8E-07 1.5E-11 71.3 6.5 46 227-275 1-49 (49)
79 cd07397 MPP_DevT Myxococcus xa 98.4 2.9E-06 6.3E-11 90.3 12.0 113 699-830 2-160 (238)
80 PF01344 Kelch_1: Kelch motif; 98.4 3.9E-07 8.5E-12 71.8 4.2 45 227-274 1-46 (47)
81 PF01344 Kelch_1: Kelch motif; 98.4 6.2E-07 1.3E-11 70.7 5.1 44 174-219 1-44 (47)
82 PF13854 Kelch_5: Kelch motif 98.2 1.9E-06 4.2E-11 66.3 5.5 40 171-210 1-41 (42)
83 PF13854 Kelch_5: Kelch motif 98.2 2E-06 4.4E-11 66.1 5.3 39 224-263 1-41 (42)
84 cd00838 MPP_superfamily metall 98.2 1.7E-05 3.6E-10 75.7 11.4 117 701-911 1-119 (131)
85 cd07394 MPP_Vps29 Homo sapiens 98.1 6.1E-05 1.3E-09 77.5 14.8 58 699-774 1-64 (178)
86 cd07388 MPP_Tt1561 Thermus the 98.1 8.6E-06 1.9E-10 86.5 8.1 71 698-775 5-75 (224)
87 smart00612 Kelch Kelch domain. 98.0 8.7E-06 1.9E-10 63.6 4.7 47 115-185 1-47 (47)
88 smart00612 Kelch Kelch domain. 97.9 1.2E-05 2.6E-10 62.8 4.7 47 345-416 1-47 (47)
89 PF07250 Glyoxal_oxid_N: Glyox 97.9 0.00069 1.5E-08 72.5 19.0 151 203-383 48-210 (243)
90 PF03089 RAG2: Recombination a 97.9 0.00072 1.6E-08 71.7 18.6 145 87-261 18-189 (337)
91 cd07392 MPP_PAE1087 Pyrobaculu 97.9 0.00027 5.9E-09 72.8 14.6 65 700-776 1-66 (188)
92 PF07250 Glyoxal_oxid_N: Glyox 97.8 0.0017 3.7E-08 69.6 19.9 139 149-300 45-189 (243)
93 cd07404 MPP_MS158 Microscilla 97.8 5E-05 1.1E-09 77.1 7.9 67 700-775 1-68 (166)
94 PF03089 RAG2: Recombination a 97.8 0.0039 8.5E-08 66.3 21.4 122 186-313 40-187 (337)
95 TIGR01640 F_box_assoc_1 F-box 97.7 0.006 1.3E-07 65.3 22.5 206 150-373 14-230 (230)
96 PRK05340 UDP-2,3-diacylglucosa 97.7 0.00018 3.9E-09 77.8 10.2 70 698-775 1-83 (241)
97 cd07403 MPP_TTHA0053 Thermus t 97.6 0.00053 1.1E-08 66.7 11.3 107 701-911 1-107 (129)
98 KOG0376 Serine-threonine phosp 97.5 1.8E-05 4E-10 89.7 -0.3 243 670-929 14-299 (476)
99 cd07400 MPP_YydB Bacillus subt 97.5 0.0017 3.6E-08 64.1 12.8 29 883-911 101-129 (144)
100 PRK11340 phosphodiesterase Yae 97.4 0.00031 6.7E-09 77.3 7.6 70 698-775 50-125 (271)
101 cd07399 MPP_YvnB Bacillus subt 97.4 0.009 1.9E-07 63.4 17.8 71 882-953 135-213 (214)
102 COG0622 Predicted phosphoester 97.4 0.0062 1.4E-07 62.0 15.7 65 698-776 2-66 (172)
103 cd07385 MPP_YkuE_C Bacillus su 97.3 0.00035 7.5E-09 74.4 6.7 70 698-775 2-76 (223)
104 TIGR01854 lipid_A_lpxH UDP-2,3 97.2 0.00086 1.9E-08 72.0 8.4 180 700-912 1-202 (231)
105 PRK11138 outer membrane biogen 97.1 0.34 7.5E-06 56.3 28.2 187 151-377 80-282 (394)
106 TIGR03729 acc_ester putative p 97.0 0.0014 3E-08 70.9 7.2 68 699-775 1-74 (239)
107 cd07390 MPP_AQ1575 Aquifex aeo 97.0 0.0026 5.7E-08 64.7 8.9 40 733-777 45-84 (168)
108 cd07391 MPP_PF1019 Pyrococcus 97.0 0.0013 2.7E-08 67.4 6.4 43 733-775 44-88 (172)
109 cd07395 MPP_CSTP1 Homo sapiens 96.9 0.042 9E-07 60.1 18.1 58 884-943 195-253 (262)
110 PRK04036 DNA polymerase II sma 96.9 0.0045 9.7E-08 74.0 10.5 120 697-827 243-388 (504)
111 TIGR00619 sbcd exonuclease Sbc 96.9 0.0024 5.2E-08 69.6 7.5 72 698-775 1-88 (253)
112 cd00840 MPP_Mre11_N Mre11 nucl 96.8 0.0022 4.8E-08 67.9 6.7 73 699-777 1-91 (223)
113 cd07396 MPP_Nbla03831 Homo sap 96.8 0.0032 7E-08 69.2 7.9 73 699-777 2-88 (267)
114 PF13360 PQQ_2: PQQ-like domai 96.8 0.96 2.1E-05 48.0 27.1 181 150-374 46-233 (238)
115 PHA02546 47 endonuclease subun 96.7 0.0032 6.9E-08 71.7 7.2 72 698-775 1-89 (340)
116 cd07398 MPP_YbbF-LpxH Escheric 96.6 0.0049 1.1E-07 65.2 7.5 28 882-909 176-203 (217)
117 COG1409 Icc Predicted phosphoh 96.6 0.059 1.3E-06 59.5 16.5 74 698-779 1-82 (301)
118 cd00844 MPP_Dbr1_N Dbr1 RNA la 96.6 0.0042 9.1E-08 67.8 6.9 70 700-775 1-86 (262)
119 PRK11138 outer membrane biogen 96.6 0.58 1.3E-05 54.4 25.0 180 150-374 170-356 (394)
120 PF13360 PQQ_2: PQQ-like domai 96.4 1.6 3.5E-05 46.3 25.8 182 151-377 4-199 (238)
121 cd07402 MPP_GpdQ Enterobacter 96.4 0.0089 1.9E-07 64.3 8.1 69 699-775 1-83 (240)
122 PRK10966 exonuclease subunit S 96.2 0.0082 1.8E-07 69.9 7.1 72 698-776 1-88 (407)
123 TIGR03300 assembly_YfgL outer 96.2 3.3 7.1E-05 47.7 29.8 181 151-377 76-267 (377)
124 TIGR00024 SbcD_rel_arch putati 96.2 0.013 2.8E-07 62.5 7.8 69 698-776 15-103 (225)
125 cd08165 MPP_MPPE1 human MPPE1 96.2 0.007 1.5E-07 60.9 5.3 44 733-776 41-90 (156)
126 PRK11148 cyclic 3',5'-adenosin 96.2 0.012 2.7E-07 64.8 7.7 71 698-775 15-98 (275)
127 cd07386 MPP_DNA_pol_II_small_a 96.1 0.02 4.3E-07 62.0 9.0 72 701-776 2-95 (243)
128 cd00839 MPP_PAPs purple acid p 96.1 0.038 8.3E-07 61.4 11.0 35 883-917 181-215 (294)
129 KOG0918 Selenium-binding prote 96.0 0.00086 1.9E-08 74.1 -2.5 207 732-952 49-261 (476)
130 cd07383 MPP_Dcr2 Saccharomyces 95.9 0.022 4.9E-07 59.5 7.8 41 733-773 44-87 (199)
131 COG2129 Predicted phosphoester 95.7 1.1 2.4E-05 47.1 19.0 206 697-943 3-217 (226)
132 cd07393 MPP_DR1119 Deinococcus 95.7 0.024 5.1E-07 61.0 7.2 44 883-928 181-227 (232)
133 TIGR00583 mre11 DNA repair pro 95.6 0.028 6.1E-07 65.1 7.9 73 698-776 4-124 (405)
134 TIGR03300 assembly_YfgL outer 95.4 3.5 7.5E-05 47.5 24.4 177 150-374 155-341 (377)
135 cd08163 MPP_Cdc1 Saccharomyces 95.4 0.36 7.9E-06 52.7 15.2 30 882-913 203-232 (257)
136 TIGR01640 F_box_assoc_1 F-box 95.3 1.4 3E-05 47.0 19.3 164 201-381 14-187 (230)
137 cd07401 MPP_TMEM62_N Homo sapi 95.3 0.05 1.1E-06 59.4 7.9 27 887-913 190-216 (256)
138 cd08164 MPP_Ted1 Saccharomyces 95.2 0.052 1.1E-06 56.2 7.3 65 705-774 24-110 (193)
139 COG2908 Uncharacterized protei 95.1 0.073 1.6E-06 56.2 8.2 198 702-945 2-229 (237)
140 cd08166 MPP_Cdc1_like_1 unchar 94.8 0.043 9.4E-07 56.9 5.5 43 733-775 45-93 (195)
141 PF12768 Rax2: Cortical protei 94.5 1.9 4.2E-05 47.6 17.8 113 149-273 15-130 (281)
142 cd00216 PQQ_DH Dehydrogenases 94.5 8.2 0.00018 46.3 24.6 113 151-272 72-193 (488)
143 cd07384 MPP_Cdc1_like Saccharo 94.5 0.072 1.6E-06 54.4 6.0 44 733-776 48-101 (171)
144 COG1407 Predicted ICC-like pho 94.4 0.13 2.7E-06 54.7 7.8 77 691-777 12-112 (235)
145 cd00216 PQQ_DH Dehydrogenases 94.2 17 0.00037 43.6 27.0 202 149-376 174-431 (488)
146 cd07380 MPP_CWF19_N Schizosacc 94.0 0.11 2.5E-06 51.7 6.3 68 701-773 1-68 (150)
147 COG1408 Predicted phosphohydro 93.9 0.12 2.6E-06 57.1 6.9 71 698-776 45-119 (284)
148 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.8 14 0.00029 44.9 24.7 112 151-272 80-199 (527)
149 cd00845 MPP_UshA_N_like Escher 93.5 0.13 2.9E-06 55.7 6.3 66 699-774 2-81 (252)
150 PF07893 DUF1668: Protein of u 93.1 1.9 4.1E-05 49.2 15.1 123 237-381 75-217 (342)
151 PRK05137 tolB translocation pr 92.8 25 0.00054 41.4 25.1 193 149-379 181-374 (435)
152 PF14582 Metallophos_3: Metall 91.6 0.23 5E-06 52.0 4.6 74 698-777 6-104 (255)
153 COG4186 Predicted phosphoester 91.3 0.83 1.8E-05 45.0 7.7 44 733-780 48-91 (186)
154 COG1311 HYS2 Archaeal DNA poly 90.7 2.1 4.5E-05 49.9 11.5 191 699-929 227-451 (481)
155 PLN02533 probable purple acid 90.6 0.37 8.1E-06 56.6 5.7 27 884-910 311-337 (427)
156 PF07893 DUF1668: Protein of u 90.6 6.6 0.00014 44.8 15.7 122 183-324 75-214 (342)
157 cd07410 MPP_CpdB_N Escherichia 90.0 0.47 1E-05 52.4 5.6 64 699-774 2-94 (277)
158 COG0420 SbcD DNA repair exonuc 89.4 0.91 2E-05 52.8 7.6 73 698-776 1-89 (390)
159 PF06874 FBPase_2: Firmicute f 89.3 0.44 9.5E-06 56.8 4.9 71 883-955 507-587 (640)
160 PRK04792 tolB translocation pr 88.6 60 0.0013 38.5 24.2 192 149-379 197-390 (448)
161 KOG3662 Cell division control 88.5 0.82 1.8E-05 52.4 6.1 57 713-774 81-143 (410)
162 TIGR02800 propeller_TolB tol-p 88.4 55 0.0012 37.9 24.3 146 201-379 214-362 (417)
163 KOG0310 Conserved WD40 repeat- 88.3 33 0.00072 39.9 18.4 68 182-265 120-187 (487)
164 PF12768 Rax2: Cortical protei 88.1 6.5 0.00014 43.5 12.7 105 188-300 2-110 (281)
165 TIGR03866 PQQ_ABC_repeats PQQ- 88.1 42 0.00091 36.2 23.1 93 150-264 53-147 (300)
166 COG1520 FOG: WD40-like repeat 87.2 44 0.00095 38.4 19.7 159 181-377 65-225 (370)
167 PRK03629 tolB translocation pr 85.9 80 0.0017 37.2 24.2 150 201-380 223-372 (429)
168 cd07412 MPP_YhcR_N Bacillus su 84.5 1.4 3.1E-05 49.0 5.4 66 699-774 2-87 (288)
169 cd07387 MPP_PolD2_C PolD2 (DNA 84.4 30 0.00064 37.8 15.2 49 733-781 45-113 (257)
170 cd07378 MPP_ACP5 Homo sapiens 84.3 2 4.3E-05 47.3 6.4 25 884-908 190-214 (277)
171 COG1520 FOG: WD40-like repeat 83.8 88 0.0019 35.9 22.9 193 151-379 79-278 (370)
172 TIGR02800 propeller_TolB tol-p 83.8 92 0.002 36.1 20.6 142 150-317 214-355 (417)
173 cd07408 MPP_SA0022_N Staphyloc 83.3 2 4.4E-05 46.8 5.9 65 699-774 2-81 (257)
174 PF09910 DUF2139: Uncharacteri 82.9 82 0.0018 34.9 20.2 151 87-268 28-185 (339)
175 PF02191 OLF: Olfactomedin-lik 82.5 76 0.0017 34.5 17.5 159 172-349 66-236 (250)
176 PRK04922 tolB translocation pr 82.3 1.1E+02 0.0024 36.0 23.9 147 200-379 227-376 (433)
177 PF06433 Me-amine-dh_H: Methyl 82.3 19 0.00042 40.6 12.9 104 148-264 15-128 (342)
178 KOG2055 WD40 repeat protein [G 81.6 21 0.00046 41.2 12.9 99 148-264 278-376 (514)
179 PRK13684 Ycf48-like protein; P 81.4 1E+02 0.0022 35.0 20.4 176 159-380 118-297 (334)
180 KOG2055 WD40 repeat protein [G 81.1 1.2E+02 0.0025 35.4 18.9 149 184-373 269-419 (514)
181 cd07411 MPP_SoxB_N Thermus the 80.9 3.2 6.9E-05 45.5 6.3 35 734-774 55-94 (264)
182 PRK01742 tolB translocation pr 76.9 1.6E+02 0.0035 34.6 22.4 140 201-379 228-369 (429)
183 TIGR03075 PQQ_enz_alc_DH PQQ-d 76.5 1.4E+02 0.003 36.4 19.0 131 180-327 65-201 (527)
184 PRK04792 tolB translocation pr 76.1 1.7E+02 0.0037 34.6 21.5 142 150-317 242-383 (448)
185 TIGR02658 TTQ_MADH_Hv methylam 75.9 1.5E+02 0.0033 33.9 29.3 105 148-264 25-138 (352)
186 cd00842 MPP_ASMase acid sphing 75.4 4.9 0.00011 44.7 5.9 45 733-777 71-124 (296)
187 COG4880 Secreted protein conta 75.0 33 0.00072 39.4 11.8 194 148-381 404-600 (603)
188 PF14583 Pectate_lyase22: Olig 74.8 1E+02 0.0022 35.6 16.0 222 149-425 59-303 (386)
189 TIGR00282 metallophosphoestera 74.7 6.1 0.00013 43.3 6.2 68 698-775 1-71 (266)
190 PRK05137 tolB translocation pr 73.6 1.9E+02 0.0042 34.0 21.5 194 150-379 226-420 (435)
191 cd00094 HX Hemopexin-like repe 73.1 1.2E+02 0.0026 31.4 17.3 152 179-374 11-178 (194)
192 PF08321 PPP5: PPP5 TPR repeat 72.8 7.5 0.00016 35.6 5.3 41 646-696 55-95 (95)
193 TIGR03866 PQQ_ABC_repeats PQQ- 72.7 1.4E+02 0.003 32.0 22.9 92 150-264 11-105 (300)
194 PRK09419 bifunctional 2',3'-cy 71.9 5.6 0.00012 53.0 6.0 66 699-774 662-735 (1163)
195 cd07409 MPP_CD73_N CD73 ecto-5 71.5 8.7 0.00019 42.5 6.6 66 699-774 2-93 (281)
196 PRK00178 tolB translocation pr 71.5 2.1E+02 0.0045 33.4 24.1 146 201-380 223-372 (430)
197 KOG0646 WD40 repeat protein [G 71.4 97 0.0021 36.1 14.6 27 340-375 285-311 (476)
198 PRK11028 6-phosphogluconolacto 70.6 1.8E+02 0.004 32.4 25.4 97 150-263 12-111 (330)
199 PF08268 FBA_3: F-box associat 70.2 27 0.00059 33.5 9.0 84 236-324 4-87 (129)
200 COG1768 Predicted phosphohydro 69.9 9.1 0.0002 38.8 5.5 41 733-777 46-88 (230)
201 PRK02889 tolB translocation pr 69.1 2.4E+02 0.0052 33.1 24.9 191 150-379 176-368 (427)
202 KOG2863 RNA lariat debranching 67.3 7.8 0.00017 43.3 4.8 73 698-776 1-89 (456)
203 PF08268 FBA_3: F-box associat 67.2 1.1E+02 0.0024 29.2 12.6 86 181-273 2-89 (129)
204 cd00094 HX Hemopexin-like repe 66.9 1.6E+02 0.0035 30.4 15.4 105 185-317 63-176 (194)
205 COG3855 Fbp Uncharacterized pr 66.6 6.5 0.00014 45.1 4.2 40 733-777 193-232 (648)
206 KOG0649 WD40 repeat protein [G 63.3 2.2E+02 0.0048 30.7 14.4 156 160-350 99-263 (325)
207 PF05096 Glu_cyclase_2: Glutam 62.3 92 0.002 34.1 11.8 92 150-264 68-159 (264)
208 cd07406 MPP_CG11883_N Drosophi 62.1 15 0.00032 40.1 6.0 57 708-774 21-82 (257)
209 PF04042 DNA_pol_E_B: DNA poly 61.4 12 0.00026 39.3 4.9 72 700-777 1-93 (209)
210 PLN00181 protein SPA1-RELATED; 61.1 4.5E+02 0.0098 33.6 21.8 63 185-264 545-608 (793)
211 PRK04922 tolB translocation pr 60.8 3.3E+02 0.0072 31.9 22.7 184 150-374 228-414 (433)
212 TIGR03074 PQQ_membr_DH membran 60.5 4.6E+02 0.01 33.5 24.8 69 201-271 270-353 (764)
213 KOG3325 Membrane coat complex 59.8 37 0.0008 33.5 7.3 104 700-846 3-108 (183)
214 PRK11028 6-phosphogluconolacto 59.8 2.9E+02 0.0062 30.8 26.2 97 151-264 58-158 (330)
215 PTZ00421 coronin; Provisional 59.3 3.9E+02 0.0084 32.2 20.9 62 186-264 139-200 (493)
216 KOG2321 WD40 repeat protein [G 59.3 82 0.0018 37.6 11.3 101 148-264 153-260 (703)
217 cd07405 MPP_UshA_N Escherichia 58.8 14 0.0003 41.0 5.1 70 699-774 2-86 (285)
218 PF09910 DUF2139: Uncharacteri 57.9 3.1E+02 0.0066 30.6 18.1 138 253-423 77-223 (339)
219 KOG2476 Uncharacterized conser 56.5 26 0.00056 40.7 6.6 71 697-772 5-75 (528)
220 KOG0310 Conserved WD40 repeat- 55.9 87 0.0019 36.6 10.6 119 230-376 71-190 (487)
221 PRK04043 tolB translocation pr 55.4 4.1E+02 0.0088 31.2 21.3 153 201-381 213-367 (419)
222 cd00200 WD40 WD40 domain, foun 55.3 2.5E+02 0.0055 28.9 24.7 63 185-264 63-125 (289)
223 PF10282 Lactonase: Lactonase, 54.7 3.6E+02 0.0079 30.5 17.4 175 175-381 144-334 (345)
224 TIGR03074 PQQ_membr_DH membran 54.5 3.5E+02 0.0076 34.5 16.8 36 231-273 188-223 (764)
225 COG0737 UshA 5'-nucleotidase/2 54.0 18 0.00039 43.8 5.3 72 697-775 26-115 (517)
226 PRK00178 tolB translocation pr 53.4 4.2E+02 0.0092 30.9 23.1 185 150-373 223-408 (430)
227 cd00200 WD40 WD40 domain, foun 52.9 2.8E+02 0.006 28.6 23.1 94 150-264 73-167 (289)
228 PF10282 Lactonase: Lactonase, 52.3 4E+02 0.0086 30.2 21.0 202 151-383 16-236 (345)
229 smart00284 OLF Olfactomedin-li 52.2 3.5E+02 0.0076 29.6 18.5 159 172-349 71-241 (255)
230 PF08450 SGL: SMP-30/Gluconola 51.6 3.2E+02 0.007 29.0 24.9 191 148-379 20-221 (246)
231 cd07407 MPP_YHR202W_N Saccharo 51.3 22 0.00048 39.4 5.1 70 699-775 7-97 (282)
232 KOG1432 Predicted DNA repair e 51.3 29 0.00064 38.9 5.8 43 733-776 103-148 (379)
233 PTZ00235 DNA polymerase epsilo 50.4 42 0.00091 37.1 6.9 76 698-775 28-122 (291)
234 cd07382 MPP_DR1281 Deinococcus 47.8 43 0.00093 36.6 6.5 66 699-774 1-69 (255)
235 KOG2321 WD40 repeat protein [G 46.8 4.5E+02 0.0098 31.8 14.6 67 224-302 130-197 (703)
236 cd08162 MPP_PhoA_N Synechococc 44.9 37 0.0008 38.3 5.7 69 700-774 3-90 (313)
237 PF08450 SGL: SMP-30/Gluconola 44.7 4.1E+02 0.0089 28.2 17.8 147 151-316 61-213 (246)
238 PRK09420 cpdB bifunctional 2', 44.7 33 0.00071 42.8 5.6 69 696-774 24-121 (649)
239 PTZ00420 coronin; Provisional 43.1 7.2E+02 0.016 30.6 20.8 61 186-264 139-199 (568)
240 TIGR01390 CycNucDiestase 2',3' 42.9 33 0.00071 42.6 5.3 66 699-774 4-98 (626)
241 KOG1378 Purple acid phosphatas 42.0 35 0.00077 39.9 4.9 34 885-918 322-355 (452)
242 PF05096 Glu_cyclase_2: Glutam 41.7 3.7E+02 0.0079 29.5 12.3 111 234-375 51-161 (264)
243 PRK04043 tolB translocation pr 41.5 6.5E+02 0.014 29.6 21.9 192 149-379 212-408 (419)
244 PRK09419 bifunctional 2',3'-cy 41.5 34 0.00074 45.7 5.5 23 884-906 256-279 (1163)
245 PRK13684 Ycf48-like protein; P 40.7 5.9E+02 0.013 28.8 21.2 177 158-380 33-211 (334)
246 PTZ00421 coronin; Provisional 39.9 7.5E+02 0.016 29.8 18.6 51 240-302 139-190 (493)
247 PRK03629 tolB translocation pr 39.5 6.9E+02 0.015 29.3 21.2 189 150-379 223-414 (429)
248 KOG0296 Angio-associated migra 39.3 5.8E+02 0.013 29.1 13.4 94 151-264 87-180 (399)
249 KOG0306 WD40-repeat-containing 38.6 9E+02 0.019 30.4 17.4 124 154-302 340-476 (888)
250 PLN00033 photosystem II stabil 37.9 7.2E+02 0.016 29.1 25.5 90 267-380 271-365 (398)
251 PF13088 BNR_2: BNR repeat-lik 36.3 3.2E+02 0.007 29.4 11.4 137 151-296 135-275 (275)
252 KOG0646 WD40 repeat protein [G 36.1 2E+02 0.0044 33.6 9.5 156 231-435 85-248 (476)
253 KOG3339 Predicted glycosyltran 35.7 1.1E+02 0.0023 31.6 6.5 92 732-828 40-144 (211)
254 KOG0308 Conserved WD40 repeat- 35.6 9E+02 0.019 29.8 14.9 121 184-327 129-265 (735)
255 PRK11907 bifunctional 2',3'-cy 35.1 57 0.0012 41.6 5.6 68 697-774 115-212 (814)
256 PF02897 Peptidase_S9_N: Proly 33.9 7.9E+02 0.017 28.3 18.7 201 150-378 150-365 (414)
257 PF03178 CPSF_A: CPSF A subuni 33.1 6.8E+02 0.015 27.8 13.6 138 185-348 42-188 (321)
258 PF02897 Peptidase_S9_N: Proly 32.6 8.3E+02 0.018 28.2 16.4 170 184-377 134-318 (414)
259 PLN00033 photosystem II stabil 32.1 8.8E+02 0.019 28.3 22.0 94 159-271 119-214 (398)
260 KOG0278 Serine/threonine kinas 31.3 7.2E+02 0.016 27.1 13.4 83 202-303 206-290 (334)
261 PF15525 DUF4652: Domain of un 30.8 6.3E+02 0.014 26.3 11.1 68 148-219 86-156 (200)
262 TIGR01530 nadN NAD pyrophospha 30.4 96 0.0021 37.9 6.5 37 733-774 52-93 (550)
263 KOG0294 WD40 repeat-containing 29.5 8.6E+02 0.019 27.4 13.9 29 177-211 45-73 (362)
264 PF02239 Cytochrom_D1: Cytochr 29.1 7.6E+02 0.017 28.4 13.3 141 200-373 15-160 (369)
265 PF03178 CPSF_A: CPSF A subuni 29.1 7.9E+02 0.017 27.3 13.3 101 150-272 62-167 (321)
266 KOG3947 Phosphoesterases [Gene 28.0 75 0.0016 34.7 4.3 63 698-776 62-127 (305)
267 PF02191 OLF: Olfactomedin-lik 27.7 8.2E+02 0.018 26.6 16.8 137 148-297 87-236 (250)
268 COG4946 Uncharacterized protei 27.6 1.1E+03 0.024 28.0 14.4 184 182-421 48-241 (668)
269 COG0634 Hpt Hypoxanthine-guani 26.6 3.9E+02 0.0086 27.4 8.8 84 668-755 9-117 (178)
270 PTZ00422 glideosome-associated 24.4 82 0.0018 36.6 4.1 24 886-909 239-262 (394)
271 PF14870 PSII_BNR: Photosynthe 24.4 1E+03 0.022 26.6 25.3 179 158-381 89-271 (302)
272 TIGR02658 TTQ_MADH_Hv methylam 24.4 1.1E+03 0.024 27.0 22.7 72 185-265 13-88 (352)
273 PRK09558 ushA bifunctional UDP 22.1 59 0.0013 39.7 2.6 72 697-774 34-120 (551)
274 PF09637 Med18: Med18 protein; 21.6 1E+02 0.0022 33.6 3.9 39 883-924 139-177 (250)
275 TIGR00282 metallophosphoestera 21.4 1E+02 0.0022 33.9 3.9 39 733-775 2-41 (266)
276 PF02875 Mur_ligase_C: Mur lig 21.3 1.9E+02 0.0042 25.6 5.2 72 697-772 11-82 (91)
277 PRK09418 bifunctional 2',3'-cy 20.3 1.5E+02 0.0032 37.8 5.6 68 697-774 39-141 (780)
278 PF02239 Cytochrom_D1: Cytochr 20.2 1.3E+03 0.029 26.4 15.4 185 149-378 15-209 (369)
279 PLN00181 protein SPA1-RELATED; 20.2 1.8E+03 0.04 28.0 23.0 92 150-264 555-650 (793)
280 PRK05583 ribosomal protein L7A 20.0 1E+02 0.0022 28.8 3.1 68 876-944 14-90 (104)
No 1
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-76 Score=591.14 Aligned_cols=288 Identities=40% Similarity=0.726 Sum_probs=274.2
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCCEEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 002047 648 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAG 727 (975)
Q Consensus 648 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~~~~~ep~~l~l~~~i~vvGDiHG~~~~L~~ll~~~g~~~~~~ 727 (975)
+++.|+.|++.+ .+.+.++..||.++.+||.+|++|+.++.|+.|+|||||||.||+.+|+.-|.++..
T Consensus 3 ldr~ie~L~~~~----------li~E~eV~~LC~~~~eiL~~E~NV~~i~tPvtvcGDIHGQf~Dllelf~igG~~~~t- 71 (303)
T KOG0372|consen 3 LDRQIEQLRRCE----------LIAESEVKALCAKVREILVEESNVQRIDTPVTVCGDIHGQFYDLLELFRIGGDVPET- 71 (303)
T ss_pred HHHHHHHHHhcC----------CCcHHHHHHHHHHHHHHHhcCCCceecCCCcEEeecccchHHHHHHHHHhCCCCCCC-
Confidence 578899998763 689999999999999999999999999999999999999999999999999888766
Q ss_pred CccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccccchhhhcCChHHHHHHhCCcccchhhhhhhccc
Q 002047 728 DIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLF 807 (975)
Q Consensus 728 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f 807 (975)
+|+|||||||||.+|+|++.||++||++||++|+|||||||.+.++..|||++||.+|||. ..+|+.+.++|
T Consensus 72 -----~YLFLGDyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHEsRqitqvYGFY~EclrKYG~---~~vWr~c~eiF 143 (303)
T KOG0372|consen 72 -----NYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGS---ANVWRYCTEIF 143 (303)
T ss_pred -----ceEeecchhccccchHHHHHHHHHHhhcCcceeEEeeccchhhhhhhhhhHHHHHHHHcCC---hHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999996 47999999999
Q ss_pred cccceEEEEcceEEEecCCccCcccCHhhhhhccCCcccCCCCcceeccccCCCCCCCCCCCcccCCCCCceeeeCHHHH
Q 002047 808 NWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRV 887 (975)
Q Consensus 808 ~~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~ 887 (975)
++||++|+|+++|||||||++|.+.++++|+.+.|..+++.++ .++|||||||.+. .||.-++||+| +.||.+++
T Consensus 144 dyL~l~aiid~kifCVHGGlSP~i~~lDqIr~lDR~~Eiph~g-~m~DllWSDPee~---~g~~~SPRGaG-ylFG~dvv 218 (303)
T KOG0372|consen 144 DYLSLAAIIDGKIFCVHGGLSPSIQTLDQIRVLDRKQEVPHDG-AMCDLLWSDPEEG---PGWGLSPRGAG-YLFGEDVV 218 (303)
T ss_pred HhhhHhheecCcEEEEcCCCCcchhhHHHHHHhhccccCCCCC-cchheeccCcccC---CCcccCCCCcc-ccccHHHH
Confidence 9999999999999999999999999999999999999998876 8999999999873 59999999999 79999999
Q ss_pred HHHHHHcCCeEEEEeccccccceEEecCCeEEEEeccccccCCCCCcEEEEEEcCCceEEeEEecCCCCCCC
Q 002047 888 MEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPAIS 959 (975)
Q Consensus 888 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~ga~l~i~~~~~~~~~~~~~~~~~~~ 959 (975)
++||+.||+++|+|+||.|++||++.++++|+|||||||||+..+|.||||.|+++....|++|+..+...+
T Consensus 219 ~~F~~~N~~~~I~RaHQLv~eGyk~~F~~~v~TVWSAPNYCYrCGN~AsIl~lde~~~~~F~vFeaa~~~~~ 290 (303)
T KOG0372|consen 219 ESFLEANGLSLICRAHQLVMEGYKWHFDEKVVTVWSAPNYCYRCGNVAAILELDEDLDKDFRVFEAAPQESR 290 (303)
T ss_pred HHHHHhCChHHHHHHHHHHHhhHHHhcCCceEEEecCCchhhhcCChHHheeeccccCcceEeeecchhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999988765443
No 2
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=6.2e-70 Score=597.21 Aligned_cols=296 Identities=51% Similarity=0.886 Sum_probs=275.5
Q ss_pred hHHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCCEEEEecCCCCHHHHHHHHHHhC-CCCC
Q 002047 647 VPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYG-SPST 725 (975)
Q Consensus 647 ~~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~~~~~ep~~l~l~~~i~vvGDiHG~~~~L~~ll~~~g-~~~~ 725 (975)
.++++|..++..........+...|+.+||.+||..+.++|..+|+++++++||+|+|||||||.||+++|+..| +|+.
T Consensus 8 ~~~~~i~~~~~~~~~~~~~~~~~~l~~~ei~~l~~~~~~if~~~~~l~e~~aPV~i~GDiHGq~~DLlrlf~~~g~~pp~ 87 (331)
T KOG0374|consen 8 DLDELIRKLLSVGNKKTEKKRQVPLSKSEIIKLCDKAREIFLSQPTLLELSAPVKIVGDIHGQFGDLLRLFDLLGSFPPD 87 (331)
T ss_pred hHHHHHHHHhhccccCCCcccceeccHHHHHHHHHHHHHHhcCCCceeecCCCEEEEccCcCCHHHHHHHHHhcCCCCCc
Confidence 356677777765443333333445899999999999999999999999999999999999999999999999999 8876
Q ss_pred CCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccccchhhhcCChHHHHHHhCCcccchhhhhhhc
Q 002047 726 AGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINR 805 (975)
Q Consensus 726 ~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~ 805 (975)
. +|||||||||||++|+|+|.||+++|++||++||+||||||++.+|..|||++||.+||++ ..+|..|++
T Consensus 88 ~------~ylFLGDYVDRG~~slE~i~LL~a~Ki~yp~~~~lLRGNHE~~~in~~yGFydE~~rr~~~---~~~w~~F~~ 158 (331)
T KOG0374|consen 88 Q------NYVFLGDYVDRGKQSLETICLLFALKIKYPENVFLLRGNHECASINRIYGFYDECKRRYGE---IKLWKAFND 158 (331)
T ss_pred c------cEEEecccccCCccceEEeehhhhhhhhCCceEEEeccccccccccceeeeHHHHHHhcch---HHHHHHHHH
Confidence 6 8999999999999999999999999999999999999999999999999999999999975 469999999
Q ss_pred cccccceEEEEcceEEEecCCccCcccCHhhhhhccCCcccCCCCcceeccccCCCCCCCCCCCcccCCCCCceeeeCHH
Q 002047 806 LFNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPD 885 (975)
Q Consensus 806 ~f~~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~ 885 (975)
.|++||++|+|+++|+|+||||+|.+.++++|+.|.||...++.+ +++|||||||.. .+.+|.+|.||.+ +.||++
T Consensus 159 ~f~~mp~~a~i~~kI~CmhGGlsp~l~~~~~i~~i~rp~~~~~~g-ll~DLlWsdp~~--~~~g~~~n~Rg~s-~~fg~~ 234 (331)
T KOG0374|consen 159 AFNCLPLAALIDGKILCMHGGLSPHLKSLDQIRAIPRPTDSPDKG-LLCDLLWSDPDD--DVPGWEENDRGVS-FTFGPA 234 (331)
T ss_pred HHhhCchhheecceEEEecCCCChhhcChHHHhhccCCcCCCccc-eeeeeeecCCCC--CCCCcccCCCcee-eEecHH
Confidence 999999999999999999999999999999999999998777665 999999999987 3789999999999 899999
Q ss_pred HHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEeccccccCCCCCcEEEEEEcCCceEEeEEecCCC
Q 002047 886 RVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLP 955 (975)
Q Consensus 886 ~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~ga~l~i~~~~~~~~~~~~~~~ 955 (975)
++++||+++++++||||||+|+||||+|++++++||||||+|||.++|+||+|.+++++.+++++++|..
T Consensus 235 ~v~~f~~~~~ldlivRaHqvv~dGyeffa~r~lvTIFSAP~Ycg~~~n~gavm~Vd~~l~~sf~~l~p~~ 304 (331)
T KOG0374|consen 235 VVEDFCKKLDLDLIVRAHQVVEDGYEFFAGRKLVTIFSAPNYCGEFDNAGAVMRVDKNLKCSFVILRPEG 304 (331)
T ss_pred HHHHHHHHhCcceEEEcCccccccceEecCceEEEEecCchhccccCCceEEEEECCCCeEEEEEecccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999954
No 3
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=5.2e-69 Score=529.24 Aligned_cols=287 Identities=37% Similarity=0.709 Sum_probs=271.3
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCCEEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 002047 648 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAG 727 (975)
Q Consensus 648 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~~~~~ep~~l~l~~~i~vvGDiHG~~~~L~~ll~~~g~~~~~~ 727 (975)
+++.|+...+.+ .|+++|+..||+.++++|..|.++..++.|+.|+|||||||.||+++|+..|-.+..
T Consensus 6 ~d~wi~~vk~ck----------yLpE~elk~LCe~v~d~L~eEsNvqPV~tPVTvCGDIHGQFyDL~eLFrtgG~vP~t- 74 (306)
T KOG0373|consen 6 LDQWIETVKKCK----------YLPENELKRLCEMVKDILMEESNVQPVSTPVTVCGDIHGQFYDLLELFRTGGQVPDT- 74 (306)
T ss_pred HHHHHHHHHHcC----------CCCHHHHHHHHHHHHHHHhhhcCccccCCCeeEeeccchhHHHHHHHHHhcCCCCCc-
Confidence 456666665543 689999999999999999999999999999999999999999999999998876644
Q ss_pred CccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccccchhhhcCChHHHHHHhCCcccchhhhhhhccc
Q 002047 728 DIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLF 807 (975)
Q Consensus 728 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f 807 (975)
+|||+|||||||.+|+|++.+|+.||.+||.+|.|||||||.+.+...|||++||..|||.. ..|+.+.++|
T Consensus 75 -----nYiFmGDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRqitqVYGFydECq~KYGna---n~wkycckVF 146 (306)
T KOG0373|consen 75 -----NYIFMGDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHESRQITQVYGFYDECQNKYGNA---NVWKYCCKVF 146 (306)
T ss_pred -----ceEEeccccccccccHHHHHHHHHHhhcCCceeEEeeccchhhhhhhhhhhHHHHHhhcCCc---hHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999975 6999999999
Q ss_pred cccceEEEEcceEEEecCCccCcccCHhhhhhccCCcccCCCCcceeccccCCCCCCCCCCCcccCCCCCceeeeCHHHH
Q 002047 808 NWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRV 887 (975)
Q Consensus 808 ~~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~ 887 (975)
+.|+++|+|++++||||||++|++.++++|+-|.|-.++|.++ .++||+||||.+ ++.|.-++||+| +.||.+++
T Consensus 147 D~LtlaAiID~~vLCVHGGLSPdirtlDqir~i~R~qEiPh~G-~fcDlmWSDPed---ve~W~vSpRGAG-wlFGskVt 221 (306)
T KOG0373|consen 147 DFLTLAAIIDEKVLCVHGGLSPDIRTLDQIRLIERNQEIPHEG-PFCDLMWSDPED---VETWAVSPRGAG-WLFGSKVT 221 (306)
T ss_pred hhhhHHHHhcCcEEEEcCCCCccceeHHHHHhHHhhccCCCCC-CccceeccChhh---hhhheeCCCCcc-eeechhhh
Confidence 9999999999999999999999999999999999999999877 899999999985 788999999999 68999999
Q ss_pred HHHHHHcCCeEEEEeccccccceEEecCCe-EEEEeccccccCCCCCcEEEEEEcCCceEEeEEecCCCCCC
Q 002047 888 MEFCNNNDLQLIVRAHECVMDGFERFAQGH-LITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPAI 958 (975)
Q Consensus 888 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~-~iTvfSa~~y~~~~~n~ga~l~i~~~~~~~~~~~~~~~~~~ 958 (975)
++|+..|+|++|.|+||.|++||+++++.| |+|||||||||+..+|.++||.++.+++.++|++..++...
T Consensus 222 ~eF~~iN~L~LicRaHQLV~EG~KymF~eK~lvTVWSAPNYCYRCGNvAsi~~~d~~~~r~~k~F~avpd~~ 293 (306)
T KOG0373|consen 222 TEFNHINNLNLICRAHQLVQEGFKYMFDEKGLVTVWSAPNYCYRCGNVASIMSFDDNLERETKIFSAVPDNS 293 (306)
T ss_pred HHHHhccchHHHHhHHHHHHhhHHhccCCCCEEEEecCCchhhhccCeeeEEEecccCCccceeeeecCCcc
Confidence 999999999999999999999999999988 99999999999999999999999999999999999888764
No 4
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=100.00 E-value=3.3e-67 Score=574.09 Aligned_cols=295 Identities=46% Similarity=0.823 Sum_probs=276.0
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCCEEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 002047 648 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAG 727 (975)
Q Consensus 648 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~~~~~ep~~l~l~~~i~vvGDiHG~~~~L~~ll~~~g~~~~~~ 727 (975)
++++|+.+++.+.+++. ....|++++|.+||++|+++|++||+++++..+++|||||||||.+|.++|+..++++..
T Consensus 11 ~~~~i~~~~~~~~~~~~--~~~~l~~~~i~~l~~~~~~il~~ep~ll~i~~~i~vvGDIHG~~~dL~~l~~~~g~~~~~- 87 (320)
T PTZ00480 11 VDNIIERLLSVRGSKPG--KNVNLTEAEVRGLCIKARDIFISQPILLELEAPLKICGDVHGQYFDLLRLFEYGGYPPES- 87 (320)
T ss_pred HHHHHHHHHhccccCcc--ccCCCCHHHHHHHHHHHHHHHHhCCceEecCCCeEEEeecccCHHHHHHHHHhcCCCCcc-
Confidence 78899999987766542 234689999999999999999999999999999999999999999999999999998765
Q ss_pred CccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccccchhhhcCChHHHHHHhCCcccchhhhhhhccc
Q 002047 728 DIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLF 807 (975)
Q Consensus 728 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f 807 (975)
+|||||||||||++++||+.+|+++|+.+|.+|++||||||...++..|||..||..+|+. .+|..++++|
T Consensus 88 -----~ylfLGDyVDRG~~s~evl~ll~~lki~~p~~v~llRGNHE~~~~~~~ygF~~e~~~~y~~----~l~~~~~~~F 158 (320)
T PTZ00480 88 -----NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYTI----KLWKTFTDCF 158 (320)
T ss_pred -----eEEEeceecCCCCCcHHHHHHHHHhcccCCCceEEEecccchhhhhhhcchHHHHHhhcCH----HHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999953 5999999999
Q ss_pred cccceEEEEcceEEEecCCccCcccCHhhhhhccCCcccCCCCcceeccccCCCCCCCCCCCcccCCCCCceeeeCHHHH
Q 002047 808 NWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRV 887 (975)
Q Consensus 808 ~~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~ 887 (975)
++||+||+|++++|||||||+|.+.++++|+.++||.+.+... ++.|+|||||.. ...+|.+|+||.| +.||++++
T Consensus 159 ~~LPlaAiI~~~i~cvHGGI~p~~~~l~~i~~i~rp~~~~~~~-~~~dllWSDP~~--~~~~~~~s~RG~g-~~FG~~~~ 234 (320)
T PTZ00480 159 NCLPVAALIDEKILCMHGGLSPELSNLEQIRRIMRPTDVPDTG-LLCDLLWSDPDK--DVQGWADNERGVS-YVFSQEIV 234 (320)
T ss_pred HhccHhheecCcEEEEcCCcCcccCCHHHHhcccCCCCCCccc-hhhheeecCccc--ccCCCccCCCCCc-cccCHHHH
Confidence 9999999999999999999999999999999999999876554 899999999986 3578999999999 68999999
Q ss_pred HHHHHHcCCeEEEEeccccccceEEecCCeEEEEeccccccCCCCCcEEEEEEcCCceEEeEEecCCCCCC
Q 002047 888 MEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPAI 958 (975)
Q Consensus 888 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~ga~l~i~~~~~~~~~~~~~~~~~~ 958 (975)
++||++||+++||||||++++||+++++++|||||||||||+..+|+||+|.|++++.+.++.+.|.+...
T Consensus 235 ~~Fl~~n~l~~IiR~Hq~v~~G~~~~~~~~~iTvFSa~~Y~~~~~N~ga~l~i~~~~~~~~~~~~p~~~~~ 305 (320)
T PTZ00480 235 QVFLKKHELDLICRAHQVVEDGYEFFSKRQLVTLFSAPNYCGEFDNAGSMMTIDESLMCSFQILKPAEQGQ 305 (320)
T ss_pred HHHHHhCCCcEEEEcCccccCceEEeCCCcEEEEeCCcccCCCCCccEEEEEECCCCcEeEEEecCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998876655
No 5
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=100.00 E-value=1e-66 Score=571.42 Aligned_cols=286 Identities=33% Similarity=0.604 Sum_probs=256.4
Q ss_pred hhHHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecC----CEEEEecCCCCHHHHHHHHHHhC
Q 002047 646 SVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKA----PIKIFGDLHGQFGDLMRLFDEYG 721 (975)
Q Consensus 646 ~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~~~~~ep~~l~l~~----~i~vvGDiHG~~~~L~~ll~~~g 721 (975)
+.++++|+.|++.. .|+.+++.+||++|+++|++||+|+++.. |++|||||||||.+|+++|+..|
T Consensus 5 ~~~~~~i~~~~~~~----------~l~~~~i~~L~~~a~~il~~ep~vl~i~~~~~~~~~vvGDiHG~~~dL~~il~~~g 74 (321)
T cd07420 5 DHIDALIEAFKEKQ----------LLHAKYVLLILREARKVLKQLPNISRVSTSISKQVTICGDLHGKLDDLFLIFYKNG 74 (321)
T ss_pred HHHHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCCEEEecCCCCCCeEEEEeCCCCHHHHHHHHHHcC
Confidence 34788999998642 47889999999999999999999999986 89999999999999999999999
Q ss_pred CCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccccchhhhcCChHHHHHHhCCcccchhhh
Q 002047 722 SPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWH 801 (975)
Q Consensus 722 ~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~ 801 (975)
+++... +|||||||||||++|+||+.+|++||+.||++|++||||||.+.++..|||.+||..+|+.. ...+|.
T Consensus 75 ~~~~~~-----~~lFLGDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~~~~~~yGf~~e~~~~y~~~-~~~l~~ 148 (321)
T cd07420 75 LPSPEN-----PYVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHIMNLRYGFTKEVMSKYKLH-GKKILR 148 (321)
T ss_pred CCCccc-----eEEEeccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhhhhhhhcChHHHHHHHhCcc-HHHHHH
Confidence 886432 79999999999999999999999999999999999999999999999999999999999863 467999
Q ss_pred hhhccccccceEEEEcceEEEecCCccCcccCHhhhhhccCCccc-----CC---------------------CCcceec
Q 002047 802 RINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITM-----EA---------------------GSIVLMD 855 (975)
Q Consensus 802 ~~~~~f~~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~-----~~---------------------~~~~~~d 855 (975)
.++++|++||+||+|++++|||||||++ ..++++|++|+|+... +. +..++.|
T Consensus 149 ~~~~~F~~LPlaaii~~~i~cvHGGi~~-~~~l~~i~~i~r~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 227 (321)
T cd07420 149 LLEDVFSWLPLATIIDNKILVVHGGISD-STDLDLLDKIDRHKYVSVLRPPLRKGMEELTGEEEDPSEPLDKTEWRQILD 227 (321)
T ss_pred HHHHHHHhCCceEEEcCCEEEEeCCCCC-ccCHHHHHhhhccccccccCCCccccccccccccccccccccccccchhhe
Confidence 9999999999999999999999999996 5789999999884210 11 0136789
Q ss_pred cccCCCCCCCCCCCcccCCCCCceeeeCHHHHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEeccccccCCCCCcE
Q 002047 856 LLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAG 935 (975)
Q Consensus 856 llWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~g 935 (975)
+|||||.+. ...|.++.||.| +.||++++++||++|++++||||||++++||+++++++|||||||||||+..+|+|
T Consensus 228 lLWSDP~~~--~~~~~~~~RG~g-~~FG~~~~~~Fl~~n~l~~IIR~He~v~~G~~~~~~~~~iTvFSa~nY~~~~~N~g 304 (321)
T cd07420 228 ILWSDPKAQ--KGCKPNTFRGGG-CYFGPDVTSKVLQKHGLSLLIRSHECKPEGYEFCHNNKVITIFSASNYYEEGSNRG 304 (321)
T ss_pred eeecCCccC--CCCCccCCCCCc-cccCHHHHHHHHHHCCCcEEEEcChhhhcceEEecCCeEEEEecCCccCCCCCccE
Confidence 999999853 233666789999 68999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCceEEeEEe
Q 002047 936 AILVLGRDLVVVPKLI 951 (975)
Q Consensus 936 a~l~i~~~~~~~~~~~ 951 (975)
|+|+|++++.+.+.++
T Consensus 305 avl~i~~~~~~~f~~~ 320 (321)
T cd07420 305 AYIKLGPDLTPHFVQY 320 (321)
T ss_pred EEEEECCCCceeEEEe
Confidence 9999999998877665
No 6
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=100.00 E-value=1.5e-66 Score=574.47 Aligned_cols=303 Identities=79% Similarity=1.341 Sum_probs=279.5
Q ss_pred HHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCCEEEEecCCCCHHHHHHHHHHhCCCCCC--CC
Q 002047 651 VIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTA--GD 728 (975)
Q Consensus 651 ~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~~~~~ep~~l~l~~~i~vvGDiHG~~~~L~~ll~~~g~~~~~--~~ 728 (975)
+|++||+++.|+++..+++.|+++++.+||++|+++|++||+++++..|++|||||||||.+|.++|+.+++++.. ++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~il~~e~~~~~i~~~~~viGDIHG~~~~L~~ll~~~g~~~~~~~~~ 80 (311)
T cd07419 1 IITHLLKPRIWKPPTDRRFFFNWNEILELCDAAEDIFKQEPMVLRLRAPIKIFGDIHGQFGDLMRLFDEYGSPVTEAAGD 80 (311)
T ss_pred ChHHhcCcccccCccccccCCCHHHHHHHHHHHHHHHHhCCCeEeeCCCEEEEEeccCCHHHHHHHHHHcCCCcccccCC
Confidence 4789999999999888888999999999999999999999999999999999999999999999999999987641 22
Q ss_pred ccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccccchhhhcCChHHHHHHhCCc--ccchhhhhhhcc
Q 002047 729 IAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGER--DGIWAWHRINRL 806 (975)
Q Consensus 729 ~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~--~~~~~~~~~~~~ 806 (975)
....+|||||||||||++|+|||.+|++||+.+|.+|++||||||.+.++..|||..||..+|+.. ....+|..++++
T Consensus 81 ~~~~~~vfLGDyVDRGp~s~evl~ll~~lk~~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~~~~~~~~~~~l~~~~~~~ 160 (311)
T cd07419 81 IEYIDYLFLGDYVDRGSNSLETICLLLALKVKYPNQIHLIRGNHEDRDINALFGFREECKERLGEDPNDGDSVWRRINRL 160 (311)
T ss_pred CcCceEEEECCccCCCCChHHHHHHHHHhhhcCCCcEEEeccccchHHHHHHhcccHHHHHhcCccchhhHHHHHHHHHH
Confidence 222379999999999999999999999999999999999999999999999999999999999862 335699999999
Q ss_pred ccccceEEEEcceEEEecCCccCcccCHhhhhhccCCcccCCCCcceeccccCCCCCCCCCCCcccCC---CCCce-eee
Q 002047 807 FNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNA---RGPGL-VTF 882 (975)
Q Consensus 807 f~~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~---rg~~~-~~f 882 (975)
|++||+++++++++|||||||+|.+.++++|+.+.||...+....++.|+|||||...+...+|.++. ||.|. +.|
T Consensus 161 f~~LPl~avi~~~~l~vHgGi~p~~~~l~~i~~i~r~~~~~~~~~~~~dllWsDP~~~~~~~~~~~~~~~~rg~g~~~~f 240 (311)
T cd07419 161 FEWLPLAAIIEDKILCMHGGIGRSINHVSEIEDLKRPLTMEFGEQVVMDLLWSDPTENDSVLGLRPNAIDPRGPGLIVKF 240 (311)
T ss_pred HHhCchhheecccEEEEccCCCCCCCcHHHHhhcCCCCCCCCCCcceeeeeccCccccccccccccCCCCCCCCCcceeE
Confidence 99999999999999999999999999999999999998544444589999999999766567888876 99995 799
Q ss_pred CHHHHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEeccccccCCCCCcEEEEEEcCCceEEeEEecC
Q 002047 883 GPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHP 953 (975)
Q Consensus 883 g~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~ga~l~i~~~~~~~~~~~~~ 953 (975)
|++++++||++||+++||||||++++||+++++++|||||||||||+..+|+||+|++++++++.+++|+|
T Consensus 241 g~~~~~~Fl~~n~l~~iiRgHe~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~~ai~~i~~~~~~~~~~~~~ 311 (311)
T cd07419 241 GPDRVHRFLEENDLQMIIRAHECVMDGFERFAQGKLITLFSATNYCGTAGNAGAILVLGRDLTIIPKLIHP 311 (311)
T ss_pred CHHHHHHHHHHCCCeEEEEechhhhCCeEEeCCCeEEEEecCCcccCCCCceEEEEEECCCCcEeEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997
No 7
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=100.00 E-value=1.6e-65 Score=557.74 Aligned_cols=284 Identities=43% Similarity=0.778 Sum_probs=266.8
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCCEEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 002047 648 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAG 727 (975)
Q Consensus 648 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~~~~~ep~~l~l~~~i~vvGDiHG~~~~L~~ll~~~g~~~~~~ 727 (975)
++++|+++++.. .|+.+++.+||++|+++|++||+++++..|++||||||||+.+|+++|+..++++..
T Consensus 2 ~~~~~~~~~~~~----------~l~~~~~~~l~~~~~~il~~e~~~~~i~~~i~vvGDIHG~~~dL~~ll~~~~~~~~~- 70 (285)
T cd07415 2 LDKWIEQLKKCE----------LLPESEVKSLCEKAKEILVKESNVQRVRSPVTVCGDIHGQFYDLLELFRVGGDPPDT- 70 (285)
T ss_pred HHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCCEEecCCCEEEEEeCCCCHHHHHHHHHHcCCCCCC-
Confidence 467888887642 478999999999999999999999999999999999999999999999999987755
Q ss_pred CccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccccchhhhcCChHHHHHHhCCcccchhhhhhhccc
Q 002047 728 DIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLF 807 (975)
Q Consensus 728 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f 807 (975)
+|||||||||||++++||+.+|++||+.+|.+|++||||||.+.++..|||..||..+|+. ..+|..++++|
T Consensus 71 -----~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~ygf~~e~~~~y~~---~~l~~~~~~~f 142 (285)
T cd07415 71 -----NYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESRQITQVYGFYDECLRKYGN---ANVWKYCTDLF 142 (285)
T ss_pred -----eEEEEeEECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccchHhhhhhcchhHHHHHhcCc---hHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999975 36999999999
Q ss_pred cccceEEEEcceEEEecCCccCcccCHhhhhhccCCcccCCCCcceeccccCCCCCCCCCCCcccCCCCCceeeeCHHHH
Q 002047 808 NWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRV 887 (975)
Q Consensus 808 ~~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~ 887 (975)
++||++|++++++|||||||+|.+.++++|++|+||.+.+..+ ++.|+|||||... .+|.+|.||.| +.||++++
T Consensus 143 ~~lPlaaii~~~i~cvHgGi~p~~~~~~~i~~i~r~~~~~~~~-~~~dllWsDP~~~---~~~~~~~Rg~g-~~fg~~~~ 217 (285)
T cd07415 143 DYLPLAALIDNQIFCVHGGLSPSIDTLDQIRAIDRFQEVPHEG-PMCDLLWSDPDDI---EGWGISPRGAG-YLFGQDVV 217 (285)
T ss_pred HHhHHHhEeCCeEEEEcCCCCCCcccHHHhhcccCCCCCCCCC-CccceEecCCCcc---CCCCcCCCCCc-cccCHHHH
Confidence 9999999999999999999999999999999999998877654 8899999999863 68999999999 78999999
Q ss_pred HHHHHHcCCeEEEEeccccccceEEecCCeEEEEeccccccCCCCCcEEEEEEcCCceEEeEEecCCC
Q 002047 888 MEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLP 955 (975)
Q Consensus 888 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~ga~l~i~~~~~~~~~~~~~~~ 955 (975)
++||++||+++||||||++++||+++++++|||||||||||+..+|+||+|.|++++++.++.+.|.+
T Consensus 218 ~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~TvfSa~~y~~~~~n~~a~l~i~~~~~~~~~~~~~~~ 285 (285)
T cd07415 218 EEFNHNNGLTLICRAHQLVMEGYQWMFDDKLVTVWSAPNYCYRCGNVASIMELDEHLKRSFKVFEAAP 285 (285)
T ss_pred HHHHHHCCCeEEEEcCccccceEEEecCCcEEEEecCCcccCCCCceEEEEEECCCCcEeEEEeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988753
No 8
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=100.00 E-value=1e-65 Score=560.05 Aligned_cols=291 Identities=38% Similarity=0.743 Sum_probs=269.8
Q ss_pred hhHHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCCEEEEecCCCCHHHHHHHHHHhCCCCC
Q 002047 646 SVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPST 725 (975)
Q Consensus 646 ~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~~~~~ep~~l~l~~~i~vvGDiHG~~~~L~~ll~~~g~~~~ 725 (975)
++++++|..+++...+.. .....++.++|.+||++|+++|++||+++++..|++|||||||||.+|+++|+.+++++.
T Consensus 2 ~~~~~~i~~~~~~~~~~~--~~~~~i~~~~i~~l~~~~~~il~~e~~ll~i~~p~~ViGDIHG~~~~L~~l~~~~~~~~~ 79 (294)
T PTZ00244 2 SLVQTLIEKMLTVKGNRT--QRQILIREEDIRAVLTEVREIFMSQPMLLEIRPPVRVCGDTHGQYYDLLRIFEKCGFPPY 79 (294)
T ss_pred chHHHHHHHHHhcccCCC--ccccCCCHHHHHHHHHHHHHHHHhCCCeEeccCCceeeccCCCCHHHHHHHHHHcCCCCc
Confidence 356788899888654432 234468999999999999999999999999999999999999999999999999999876
Q ss_pred CCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccccchhhhcCChHHHHHHhCCcccchhhhhhhc
Q 002047 726 AGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINR 805 (975)
Q Consensus 726 ~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~ 805 (975)
+ +|||||||||||++|+||+.+|+++|+.+|.++++||||||.+.++..|||.+|+..+|+. .+|..+++
T Consensus 80 ~------~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~y~~----~l~~~~~~ 149 (294)
T PTZ00244 80 S------NYLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASINKMYGFFDDVKRRYNI----KLFKAFTD 149 (294)
T ss_pred c------cEEEeeeEecCCCCHHHHHHHHHHHhhccCCeEEEEecccchHhHhhccChHHHHHHHhhH----HHHHHHHH
Confidence 5 7999999999999999999999999999999999999999999999999999999999964 59999999
Q ss_pred cccccceEEEEcceEEEecCCccCcccCHhhhhhccCCcccCCCCcceeccccCCCCCCCCCCCcccCCCCCceeeeCHH
Q 002047 806 LFNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPD 885 (975)
Q Consensus 806 ~f~~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~ 885 (975)
+|++||++|++++++|||||||+|.+.++++|+.++||.+.+... ++.|+|||||.. ...+|.+|+||.| +.||++
T Consensus 150 ~f~~lPlaaii~~~il~vHgGi~p~~~~l~~i~~i~rp~~~~~~~-~~~dllWsDP~~--~~~~~~~~~Rg~g-~~fg~~ 225 (294)
T PTZ00244 150 VFNTMPVCCVISEKIICMHGGLSPDLTSLASVNEIERPCDVPDRG-ILCDLLWADPED--EVRGFLESDRGVS-YLFGED 225 (294)
T ss_pred HHHhCchheEecCeeEEEcCCCCchhhHHHHhhhhccccCCCccc-hhheeeecCccc--ccCCCCcCCCCCc-cccCHH
Confidence 999999999999999999999999999999999999999876544 899999999985 3578999999999 789999
Q ss_pred HHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEeccccccCCCCCcEEEEEEcCCceEEeEEec
Q 002047 886 RVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIH 952 (975)
Q Consensus 886 ~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~ga~l~i~~~~~~~~~~~~ 952 (975)
++++||++||+++||||||++++||+++++++||||||||||||..+|+||+|.|++++.+.++++.
T Consensus 226 ~~~~Fl~~n~l~~iiR~Hq~~~~G~~~~~~~~~iTvfSa~~Y~~~~~N~~a~l~i~~~~~~~f~~~~ 292 (294)
T PTZ00244 226 IVNDFLDMVDMDLIVRAHQVMERGYGFFASRQLVTVFSAPNYCGEFDNDAAVMNIDDKLQCSFLIIP 292 (294)
T ss_pred HHHHHHHHcCCcEEEEcCccccCceEEcCCCeEEEEeCCccccCCCCceEEEEEECCCCcEeEEEee
Confidence 9999999999999999999999999999999999999999999999999999999999999988764
No 9
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=100.00 E-value=1.2e-65 Score=560.65 Aligned_cols=291 Identities=48% Similarity=0.857 Sum_probs=270.5
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCCEEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 002047 648 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAG 727 (975)
Q Consensus 648 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~~~~~ep~~l~l~~~i~vvGDiHG~~~~L~~ll~~~g~~~~~~ 727 (975)
++++|+.+++.+.++. .....|+++++.+||++|+++|++||+++++..+++||||||||+.+|+++|+..++++..
T Consensus 2 ~~~~i~~~~~~~~~~~--~~~~~~~~~~i~~l~~~~~~il~~ep~~l~i~~~i~viGDIHG~~~~L~~l~~~~~~~~~~- 78 (293)
T cd07414 2 IDSIIERLLEVRGSRP--GKNVQLTEAEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPES- 78 (293)
T ss_pred HHHHHHHHHhccccCC--cccCCCCHHHHHHHHHHHHHHHHhCCCeEecCCceEEEEecCCCHHHHHHHHHhcCCCCcc-
Confidence 4678888888765543 2344689999999999999999999999999999999999999999999999999998765
Q ss_pred CccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccccchhhhcCChHHHHHHhCCcccchhhhhhhccc
Q 002047 728 DIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLF 807 (975)
Q Consensus 728 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f 807 (975)
+|||||||||||++++||+.+|+++|+.||.++++||||||.+.++..|||..||..+|+. .+|..++++|
T Consensus 79 -----~~lfLGDyVDRG~~s~e~i~ll~~lk~~~p~~i~llrGNHE~~~~~~~~gf~~e~~~~y~~----~l~~~~~~~f 149 (293)
T cd07414 79 -----NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNI----KLWKTFTDCF 149 (293)
T ss_pred -----eEEEEeeEecCCCCcHHHHHHHHHhhhhCCCcEEEEecccchhhHhhhcchhhHHHHhhhH----HHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999864 5999999999
Q ss_pred cccceEEEEcceEEEecCCccCcccCHhhhhhccCCcccCCCCcceeccccCCCCCCCCCCCcccCCCCCceeeeCHHHH
Q 002047 808 NWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRV 887 (975)
Q Consensus 808 ~~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~ 887 (975)
++||++|++++++|||||||+|.+.++++|+.++||.+.+... ++.|+|||||.. ...+|.+|+||.| +.||++++
T Consensus 150 ~~lPlaa~i~~~i~cvHgGi~p~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~--~~~~~~~~~Rg~g-~~fg~~~~ 225 (293)
T cd07414 150 NCLPVAAIIDEKIFCMHGGLSPDLQSMEQIRRIMRPTDVPDQG-LLCDLLWSDPDK--DVQGWGENDRGVS-FTFGKDVV 225 (293)
T ss_pred HHhHHHHhhCCcEEEEccCCCcccCcHHHHhcccCCCCCCchh-hHhhhhccCccc--ccCCCccCCCCcc-eecCHHHH
Confidence 9999999999999999999999999999999999998876544 899999999986 3578999999999 68999999
Q ss_pred HHHHHHcCCeEEEEeccccccceEEecCCeEEEEeccccccCCCCCcEEEEEEcCCceEEeEEecCC
Q 002047 888 MEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPL 954 (975)
Q Consensus 888 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~ga~l~i~~~~~~~~~~~~~~ 954 (975)
++||++||+++||||||++++||+++++++|||||||||||+..+|+||+|.|++++.+.++.++|.
T Consensus 226 ~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~iTvfSa~~Y~~~~~N~~a~l~i~~~~~~~~~~~~~~ 292 (293)
T cd07414 226 AKFLNKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPA 292 (293)
T ss_pred HHHHHHcCCeEEEECCccccCeEEEeCCCcEEEEecCCcccCCCCceEEEEEECCCCcEEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999988763
No 10
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=100.00 E-value=3.5e-65 Score=557.38 Aligned_cols=287 Identities=41% Similarity=0.746 Sum_probs=267.1
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCCEEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 002047 648 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAG 727 (975)
Q Consensus 648 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~~~~~ep~~l~l~~~i~vvGDiHG~~~~L~~ll~~~g~~~~~~ 727 (975)
++++|+.+++.. .|+++++.+||++|+++|++||+++++..|++||||||||+.+|+++|+..+.++..
T Consensus 3 ~~~~~~~~~~~~----------~l~~~~i~~l~~~~~~il~~e~~~~~i~~~i~vvGDIHG~~~~L~~l~~~~~~~~~~- 71 (303)
T PTZ00239 3 IDRHIATLLNGG----------CLPERDLKLICERAKEIFLEESNVQPVRAPVNVCGDIHGQFYDLQALFKEGGDIPNA- 71 (303)
T ss_pred HHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCCeEecCCCEEEEEeCCCCHHHHHHHHHhcCCCCCc-
Confidence 567888887642 478999999999999999999999999999999999999999999999999887655
Q ss_pred CccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccccchhhhcCChHHHHHHhCCcccchhhhhhhccc
Q 002047 728 DIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLF 807 (975)
Q Consensus 728 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f 807 (975)
+|||||||||||++++||+.+|++||+.+|.+|++||||||.+.++..|||..||..+|+.. .+|..++++|
T Consensus 72 -----~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~ky~~~---~~~~~~~~~f 143 (303)
T PTZ00239 72 -----NYIFIGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCTQVYGFYEEILRKYGNS---NPWRLFMDVF 143 (303)
T ss_pred -----eEEEeeeEcCCCCCHHHHHHHHHHhhhcCCCcEEEEecccchHHHhhhcChHHHHHHHhcCh---hHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999853 5899999999
Q ss_pred cccceEEEEcceEEEecCCccCcccCHhhhhhccCCcccCCCCcceeccccCCCCCCCCCCCcccCCCCCceeeeCHHHH
Q 002047 808 NWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRV 887 (975)
Q Consensus 808 ~~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~ 887 (975)
++||++|++++++|||||||+|.+.++++|+.|+||.+++..+ +++|+|||||.+ ..+|.+|.||.| +.||++++
T Consensus 144 ~~LPlaaii~~~i~cvHgGi~p~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~---~~~~~~~~Rg~g-~~fg~~~~ 218 (303)
T PTZ00239 144 DCLPLAALIEGQILCVHGGLSPDMRTIDQIRTIDRKIEIPHEG-PFCDLMWSDPEE---VEYWAVNSRGAG-YLFGAKVT 218 (303)
T ss_pred HhCchheEEcCeEEEEcCccCcccccHhhhccccCCCCCCCCC-CceeeEecCccc---cCCCccCCCCCc-cccCHHHH
Confidence 9999999999999999999999999999999999999887655 789999999985 468999999999 68999999
Q ss_pred HHHHHHcCCeEEEEeccccccceEEecC-CeEEEEeccccccCCCCCcEEEEEEcCCceEEeEEecCCCCCC
Q 002047 888 MEFCNNNDLQLIVRAHECVMDGFERFAQ-GHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPAI 958 (975)
Q Consensus 888 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~-~~~iTvfSa~~y~~~~~n~ga~l~i~~~~~~~~~~~~~~~~~~ 958 (975)
++||++||+++||||||++++||+++++ ++|||||||||||+..+|+||+|.+++++++.++.+.|.+...
T Consensus 219 ~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~iTvfSa~~Y~~~~~N~~ail~i~~~~~~~~~~~~~~~~~~ 290 (303)
T PTZ00239 219 KEFCRLNDLTLICRAHQLVMEGYKYWFPDQNLVTVWSAPNYCYRCGNIASILCLDENLQQTWKTFKEVPESA 290 (303)
T ss_pred HHHHHHCCCcEEEEcChhhccceEEEeCCCeEEEEECCCcccCCCCceEEEEEECCCCcEeeEEeeCCCccc
Confidence 9999999999999999999999998665 5599999999999999999999999999999999999987754
No 11
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=100.00 E-value=2.9e-64 Score=553.99 Aligned_cols=293 Identities=35% Similarity=0.638 Sum_probs=268.9
Q ss_pred ChhHHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCC----EEEEecCCCCHHHHHHHHHHh
Q 002047 645 NSVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAP----IKIFGDLHGQFGDLMRLFDEY 720 (975)
Q Consensus 645 ~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~~~~~ep~~l~l~~~----i~vvGDiHG~~~~L~~ll~~~ 720 (975)
.++++++|+.+++.+ .|+.+++.+||++|.++|++||+++++..| ++|||||||||.+|+++|+..
T Consensus 13 ~~~~~~~~~~~~~~~----------~l~~~~~~~l~~~~~~il~~ep~l~~i~~p~~~~~~VvGDIHG~~~dL~~ll~~~ 82 (316)
T cd07417 13 LEFVKEMIEWFKDQK----------KLHKKYAYQILLQVKELLKKLPSLVEITIPEGEKITVCGDTHGQFYDLLNIFELN 82 (316)
T ss_pred HHHHHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCcceeccCCCCceeEEeecccCCHHHHHHHHHhc
Confidence 467889999998742 478899999999999999999999999866 999999999999999999999
Q ss_pred CCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccccchhhhcCChHHHHHHhCCcccchhh
Q 002047 721 GSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAW 800 (975)
Q Consensus 721 g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~ 800 (975)
++++..+ +|||||||||||++|+|||.+|++||+.+|++|++||||||.+.++..|||..|+..+|+. .+|
T Consensus 83 g~~~~~~-----~ylFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~~~~~~~gf~~e~~~k~~~----~l~ 153 (316)
T cd07417 83 GLPSETN-----PYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMYGFEGEVKAKYNE----QMF 153 (316)
T ss_pred CCCCccC-----eEEEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchHHHHHHhhhcchhhhcccH----HHH
Confidence 9876542 7999999999999999999999999999999999999999999999999999999999864 589
Q ss_pred hhhhccccccceEEEEcceEEEecCCc-cCcccCHhhhhhccCCcccCCCCcceeccccCCCCCCCCCCCcccCCCCCce
Q 002047 801 HRINRLFNWLPLAALIEKKIICMHGGI-GRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGL 879 (975)
Q Consensus 801 ~~~~~~f~~LPlaa~i~~~il~vHgGi-~~~~~~~~~i~~i~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~ 879 (975)
..++++|++||+++++++++||||||| ++.+.++++|++++||.+.+.. .+++|+|||||.+. .+|.+|.||.|
T Consensus 154 ~~~~~~f~~LPlaaii~~~~~~vHgGi~~~~~~~l~~i~~i~r~~~~~~~-~~~~dllWsDP~~~---~~~~~s~Rg~g- 228 (316)
T cd07417 154 DLFSEVFNWLPLAHLINGKVLVVHGGLFSDDGVTLDDIRKIDRFRQPPDS-GLMCELLWSDPQPQ---PGRSPSKRGVG- 228 (316)
T ss_pred HHHHHHHHhchHhheeCCeEEEEccccccCCCccHHHhhcccCCCCCCcc-ccceeeeecCCCCC---CCCCccCCCCc-
Confidence 999999999999999999999999999 5678899999999999776554 48999999999863 57999999999
Q ss_pred eeeCHHHHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEeccccccCCCCCcEEEEEEcC-CceEEeEEecCCCCCC
Q 002047 880 VTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGR-DLVVVPKLIHPLPPAI 958 (975)
Q Consensus 880 ~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~ga~l~i~~-~~~~~~~~~~~~~~~~ 958 (975)
+.||++++++||++||+++||||||++++||+++++++|+|||||||||+..+|+||+|+|++ ++++.++.+.+.+.+.
T Consensus 229 ~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~TvfSa~~Y~~~~~N~ga~~~i~~~~~~~~~~~~~~~~~~~ 308 (316)
T cd07417 229 CQFGPDVTKRFLEENNLEYIIRSHEVKDEGYEVEHDGKCITVFSAPNYCDQMGNKGAFIRITGSDLKPKFTQFEAVPHPN 308 (316)
T ss_pred eEeCHHHHHHHHHHcCCcEEEECCcccceeEEEecCCeEEEEeCCccccCCCCcceEEEEEeCCCceeeeEeccCCCCCC
Confidence 699999999999999999999999999999999999999999999999999999999999999 8999999998876665
Q ss_pred CCC
Q 002047 959 SSP 961 (975)
Q Consensus 959 ~~~ 961 (975)
.-|
T Consensus 309 ~~~ 311 (316)
T cd07417 309 VKP 311 (316)
T ss_pred CCc
Confidence 443
No 12
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=100.00 E-value=2.7e-63 Score=545.87 Aligned_cols=287 Identities=36% Similarity=0.636 Sum_probs=260.7
Q ss_pred HHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCCEEEEecCCCCHHHHHHHHHHhCCCCCCCC
Q 002047 649 KKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAGD 728 (975)
Q Consensus 649 ~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~~~~~ep~~l~l~~~i~vvGDiHG~~~~L~~ll~~~g~~~~~~~ 728 (975)
+-+++++++.. .|+++++.+||++|+++|++||+++++..|++||||||||+.+|.++|+..+.++..
T Consensus 4 ~~~~~~~~~~~----------~l~~~~i~~l~~~~~~il~~e~~l~~i~~~i~ViGDIHG~~~dL~~l~~~~g~~~~~-- 71 (305)
T cd07416 4 DVLKAHFMREG----------RLSEEDALRIITEGAEILRQEPNLLRIEAPVTVCGDIHGQFYDLLKLFEVGGSPANT-- 71 (305)
T ss_pred HHHHHHHHcCC----------CCCHHHHHHHHHHHHHHHHhCCCeEccCCCEEEEEeCCCCHHHHHHHHHhcCCCCCc--
Confidence 44666666542 478899999999999999999999999999999999999999999999999987765
Q ss_pred ccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccccchhhhcCChHHHHHHhCCcccchhhhhhhcccc
Q 002047 729 IAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFN 808 (975)
Q Consensus 729 ~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~ 808 (975)
+|||||||||||++|+||+.+|++||+.+|.+|++||||||.+.++..|||..||..+|+. .+|..++++|+
T Consensus 72 ----~ylFLGDyVDRG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~y~~----~l~~~~~~~f~ 143 (305)
T cd07416 72 ----RYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSE----RVYDACMEAFD 143 (305)
T ss_pred ----eEEEECCccCCCCChHHHHHHHHHHHhhcCCCEEEEeCCCcHHHHHHhhCchhHHHHhccH----HHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999999999999998853 58999999999
Q ss_pred ccceEEEEcceEEEecCCccCcccCHhhhhhccCCcccCCCCcceeccccCCCCCCCCC----CCcccC-CCCCceeeeC
Q 002047 809 WLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSV----EGLRPN-ARGPGLVTFG 883 (975)
Q Consensus 809 ~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dllWsdP~~~~~~----~~~~~n-~rg~~~~~fg 883 (975)
+||+++++++++|||||||++.+.++++|++|+||.+.+..+ +++|+|||||...+.. .+|.+| .||.| +.||
T Consensus 144 ~LPlaaii~~~i~~vHGGi~p~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~~~~~~~~~~~~~~~~~Rg~g-~~fG 221 (305)
T cd07416 144 CLPLAALMNQQFLCVHGGLSPELKTLDDIRKLDRFREPPAFG-PMCDLLWSDPLEDFGNEKTQEHFVHNTVRGCS-YFYS 221 (305)
T ss_pred hccceeEEcCCEEEEcCCCCcccccHHHhcccCCCCCCCCCC-cceeeeecCcccccccccccccccccCCCCCc-eecC
Confidence 999999999999999999999999999999999998776554 8899999999864321 257776 89999 7999
Q ss_pred HHHHHHHHHHcCCeEEEEeccccccceEEecCC------eEEEEeccccccCCCCCcEEEEEEcCCceEEeEEecCCCCC
Q 002047 884 PDRVMEFCNNNDLQLIVRAHECVMDGFERFAQG------HLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPA 957 (975)
Q Consensus 884 ~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~------~~iTvfSa~~y~~~~~n~ga~l~i~~~~~~~~~~~~~~~~~ 957 (975)
++++++||++||+++||||||++++||++++++ +|||||||||||+..+|+||+|.++++. +.++.+.+.+-+
T Consensus 222 ~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~~~~~~iTvFSa~~Y~~~~~N~~a~l~i~~~~-~~~~~~~~~~~~ 300 (305)
T cd07416 222 YRAVCEFLQKNNLLSIIRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNV-MNIRQFNCSPHP 300 (305)
T ss_pred HHHHHHHHHHcCCeEEEEeccccccceEEecCCCcCCCCcEEEEeCCccccCCCCceEEEEEEcCCc-ceEEEecCCCCC
Confidence 999999999999999999999999999998886 9999999999999999999999999985 688888776544
Q ss_pred C
Q 002047 958 I 958 (975)
Q Consensus 958 ~ 958 (975)
+
T Consensus 301 ~ 301 (305)
T cd07416 301 Y 301 (305)
T ss_pred C
Confidence 3
No 13
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=100.00 E-value=3.2e-63 Score=538.31 Aligned_cols=269 Identities=47% Similarity=0.897 Sum_probs=254.6
Q ss_pred cCHHHHHHHHHHHHHHHhcCCCeeeecCCEEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHH
Q 002047 671 LDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLET 750 (975)
Q Consensus 671 l~~~~i~~l~~~~~~~~~~ep~~l~l~~~i~vvGDiHG~~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~ev 750 (975)
++++++.+||++|+++|++||+++++.+|++||||||||+.+|+++|+..+.++.. +|||||||||||++++||
T Consensus 1 ~~~~~i~~l~~~~~~il~~e~~~~~i~~~i~vvGDiHG~~~~l~~ll~~~~~~~~~------~~vfLGD~VDrG~~s~e~ 74 (271)
T smart00156 1 LYAEEILELLREVKEIFRQEPNLVEVSAPVTVCGDIHGQFDDLLRLFDLNGPPPDT------NYVFLGDYVDRGPFSIEV 74 (271)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEeCCCEEEEEeCcCCHHHHHHHHHHcCCCCCc------eEEEeCCccCCCCChHHH
Confidence 35789999999999999999999999999999999999999999999999987655 899999999999999999
Q ss_pred HHHHHHhhhcCCCCEEEEeccccccchhhhcCChHHHHHHhCCcccchhhhhhhccccccceEEEEcceEEEecCCccCc
Q 002047 751 ITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRS 830 (975)
Q Consensus 751 l~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHgGi~~~ 830 (975)
+.+|++||+.+|.+|++||||||.+.++..|||..||..+|+. .+|..++++|++||+++++++++|||||||+|.
T Consensus 75 l~~l~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~----~l~~~~~~~f~~LPl~aii~~~~~~vHgGi~~~ 150 (271)
T smart00156 75 ILLLFALKILYPNRVVLLRGNHESRSMNEIYGFYDECKRKYGE----EIYEKFQEAFSWLPLAALIDNKILCMHGGLSPD 150 (271)
T ss_pred HHHHHHHHhcCCCCEEEEeccccHHHHHHhccchhhhhhhcCH----HHHHHHHHHHhhChhheEEcCeEEEEecCCCCc
Confidence 9999999999999999999999999999999999999999964 699999999999999999999999999999999
Q ss_pred ccCHhhhhhccCCcccCCCCcceeccccCCCCCCCCCCCcccCCCCCceeeeCHHHHHHHHHHcCCeEEEEeccccccce
Q 002047 831 INHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGF 910 (975)
Q Consensus 831 ~~~~~~i~~i~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~ 910 (975)
+.++++|++|+||.+.+.. .++.|+|||||.. ...+|.+|.||.| +.||++++++||++||+++||||||++++||
T Consensus 151 ~~~l~~i~~i~r~~~~~~~-~~~~dllWsDP~~--~~~~~~~~~Rg~g-~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~ 226 (271)
T smart00156 151 LTTLDDIRKLKRPQEPPDE-GLLIDLLWSDPDQ--PVDGFQPSIRGAS-YYFGPDAVDEFLKKNNLKLIIRAHQVVDDGY 226 (271)
T ss_pred cCCHHHHhcccCCCCCCch-hhhhheeecCCCc--ccCCCccCCCCCc-cccCHHHHHHHHHHCCCeEEEecCcccCCcE
Confidence 9999999999999877654 4899999999974 3578999999999 6899999999999999999999999999999
Q ss_pred EEecCCeEEEEeccccccCCCCCcEEEEEEcCCceEEeEEecC
Q 002047 911 ERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHP 953 (975)
Q Consensus 911 ~~~~~~~~iTvfSa~~y~~~~~n~ga~l~i~~~~~~~~~~~~~ 953 (975)
+++++++|||||||||||+..+|+||+|.+++++++.++++.|
T Consensus 227 ~~~~~~~~~TvfSa~~y~~~~~n~~a~~~i~~~~~~~~~~~~~ 269 (271)
T smart00156 227 EFFHDRKLVTIFSAPNYCGRFGNKAAVLKVDKDLKLSFEQFKP 269 (271)
T ss_pred EEecCCcEEEEECCcccccCCCceEEEEEECCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999998876
No 14
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=100.00 E-value=2.9e-61 Score=534.73 Aligned_cols=299 Identities=33% Similarity=0.571 Sum_probs=257.7
Q ss_pred hhHHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeec----CCEEEEecCCCCHHHHHHHHHHhC
Q 002047 646 SVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLK----APIKIFGDLHGQFGDLMRLFDEYG 721 (975)
Q Consensus 646 ~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~~~~~ep~~l~l~----~~i~vvGDiHG~~~~L~~ll~~~g 721 (975)
+.++.||+.+.....--.+......|+.++|.+||++|+++|++||+++++. .+++||||||||+.+|+++|+..|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~a~~il~~ep~ll~i~~~~~~~i~VvGDIHG~~~dL~~ll~~~g 89 (377)
T cd07418 10 EWVHELMSVFEWSSRNLPPSELPSVLPVNVFDSLVLTAHKILHREPNCVRIDVEDVCEVVVVGDVHGQLHDVLFLLEDAG 89 (377)
T ss_pred HHHHHHHHHHHhcccccCchhhccCCCHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCEEEEEecCCCHHHHHHHHHHhC
Confidence 4577888887543211122333446889999999999999999999999998 899999999999999999999999
Q ss_pred CCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccccchhhhcCChHHHHHHhCCcccchhhh
Q 002047 722 SPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWH 801 (975)
Q Consensus 722 ~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~ 801 (975)
+++.+. +|||||||||||++|+|||.+|++||+.+|.+|++||||||.+.++..|||..||..+|+.. +..+|+
T Consensus 90 ~~~~~~-----~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~~i~~~~Gf~~E~~~~y~~~-~~~l~~ 163 (377)
T cd07418 90 FPDQNR-----FYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYGFEQEVLTKYGDK-GKHVYR 163 (377)
T ss_pred CCCCCc-----eEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeecccccchhhcccchhhhhhcCch-HHHHHH
Confidence 876542 69999999999999999999999999999999999999999999999999999999999864 457999
Q ss_pred hhhccccccceEEEEcceEEEecCCcc---------------------------CcccCHhhhhhccCCc-ccCCCC--c
Q 002047 802 RINRLFNWLPLAALIEKKIICMHGGIG---------------------------RSINHVEQIENLQRPI-TMEAGS--I 851 (975)
Q Consensus 802 ~~~~~f~~LPlaa~i~~~il~vHgGi~---------------------------~~~~~~~~i~~i~rp~-~~~~~~--~ 851 (975)
.++++|++||+++++++++|||||||+ +.+.++++|+.++||. +.+..+ .
T Consensus 164 ~~~~~f~~LPlaavI~~~i~cvHGGI~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~sl~~i~~i~r~~~~~~~~~~~~ 243 (377)
T cd07418 164 KCLGCFEGLPLASIIAGRVYTAHGGLFRSPSLPKRKKQKGKNRRVLLLEPESESLKLGTLDDLMKARRSVLDPPGEGSNL 243 (377)
T ss_pred HHHHHHHhCCcEEEECCCEEEECCCcCCcccccccccccccccccccccccccCCCCCCHHHHhhCCCCCCCCCCCCccc
Confidence 999999999999999999999999993 4567999999999985 443322 2
Q ss_pred ceeccccCCCCCCCCCCCcccC-CCCCceeeeCHHHHHHHHHHcCCeEEEEeccc------------cccceEEecC---
Q 002047 852 VLMDLLWSDPTENDSVEGLRPN-ARGPGLVTFGPDRVMEFCNNNDLQLIVRAHEC------------VMDGFERFAQ--- 915 (975)
Q Consensus 852 ~~~dllWsdP~~~~~~~~~~~n-~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~------------~~~G~~~~~~--- 915 (975)
+++|||||||.. ..+|.+| .||.| +.||++++++||++|++++||||||| |++||+++++
T Consensus 244 i~~dlLWSDP~~---~~g~~~~~~RG~g-~~FG~~~~~~FL~~n~l~~IIRsHe~~~~~~~~~~~~~v~~Gy~~~~~~~~ 319 (377)
T cd07418 244 IPGDVLWSDPSL---TPGLSPNKQRGIG-LLWGPDCTEEFLEKNNLKLIIRSHEGPDAREKRPGLAGMNKGYTVDHDVES 319 (377)
T ss_pred cceeeEeeCCcc---CCCCCccCCCCCc-cccCHHHHHHHHHHcCCcEEEECCCCcccccccccchhhhCceEEeccCCC
Confidence 578999999986 3578787 79999 68999999999999999999999996 6899999887
Q ss_pred CeEEEEecccccc------CCCCCcEEEEEEcCCc--eEEeEEecCC
Q 002047 916 GHLITLFSATNYC------GTANNAGAILVLGRDL--VVVPKLIHPL 954 (975)
Q Consensus 916 ~~~iTvfSa~~y~------~~~~n~ga~l~i~~~~--~~~~~~~~~~ 954 (975)
++||||||||||| +..+|+||+++++.+- ...++.+...
T Consensus 320 ~~liTvFSa~nY~~~~~~~~~~~N~ga~~~~~~~~~~~~~~~~~~~~ 366 (377)
T cd07418 320 GKLITLFSAPDYPQFQATEERYNNKGAYIILQPPDFSDPQFHTFEAV 366 (377)
T ss_pred CcEEEEecCCccccccccccccCcceEEEEEecCCCCCccceEeecc
Confidence 9999999999999 5689999999997654 4555555443
No 15
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-60 Score=480.56 Aligned_cols=285 Identities=40% Similarity=0.709 Sum_probs=267.1
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCCEEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 002047 648 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAG 727 (975)
Q Consensus 648 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~~~~~ep~~l~l~~~i~vvGDiHG~~~~L~~ll~~~g~~~~~~ 727 (975)
++..|..|.+.+ .+++.++..||+.|+++|.+|.+|..++.|++|+||+||||++|+++|+.-|..+..
T Consensus 20 vd~~ie~L~~ck----------~lse~~v~~lc~~a~~~L~~e~nV~~v~~pvtvcGDvHGqf~dl~ELfkiGG~~pdt- 88 (319)
T KOG0371|consen 20 VDPWIEQLYKCK----------PLSEVDVSSLCLLAKEILDKEENVQPVNCPVTVCGDVHGQFHDLIELFKIGGLAPDT- 88 (319)
T ss_pred cccchHHHHhcC----------CCccccchhHHHHHHHHHhccccccccccceEEecCcchhHHHHHHHHHccCCCCCc-
Confidence 455667776653 578899999999999999999999999999999999999999999999877766544
Q ss_pred CccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccccchhhhcCChHHHHHHhCCcccchhhhhhhccc
Q 002047 728 DIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLF 807 (975)
Q Consensus 728 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f 807 (975)
+|+|+|||||||++|+|++.+|.++|++||++|.+||||||.+.+...|||++||.+|||.. .+|..|.++|
T Consensus 89 -----nylfmGDyvdrGy~SvetVS~lva~Kvry~~rvtilrGNHEsrqitqvygfydeclRkyg~a---nvw~~Ftdlf 160 (319)
T KOG0371|consen 89 -----NYLFMGDYVDRGYYSVETVSLLVALKVRYPDRVTILRGNHESRQITQVYGFYDECLRKYGNA---NVWKYFTDLF 160 (319)
T ss_pred -----ceeeeeeecccccchHHHHHHHHHhhccccceeEEecCchHHHHHHHHHhhHHHHHhhcccc---cchHHhhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999975 6999999999
Q ss_pred cccceEEEEcceEEEecCCccCcccCHhhhhhccCCcccCCCCcceeccccCCCCCCCCCCCcccCCCCCceeeeCHHHH
Q 002047 808 NWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRV 887 (975)
Q Consensus 808 ~~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~ 887 (975)
+++|++|+|+++|||+|||++|++.+++.++.+.|-.+++.++ .++|||||||.+ .-+|..++||+| +.||.+..
T Consensus 161 dy~P~tali~~~ifc~HGgLspsi~tld~~r~~dr~~evpheg-pmcDlLwsdpdd---r~gwg~sprgag-~tfg~di~ 235 (319)
T KOG0371|consen 161 DYLPLTALIESKIFCLHGGLSPSIDTLDLIRLLDRIQEVPHEG-PMCDLLWSDPDD---RCGWGISPRGAG-YTFGQDIS 235 (319)
T ss_pred hccchHhhhccceeeccCCcCcccchHHHHHHHHHhhcccCCC-ChhheeccCccc---CCCCCCCCCCCC-cccchhhH
Confidence 9999999999999999999999999999999999988888776 788999999985 679999999999 79999999
Q ss_pred HHHHHHcCCeEEEEeccccccceEEecCCeEEEEeccccccCCCCCcEEEEEEcCCceEEeEEecCCCC
Q 002047 888 MEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPP 956 (975)
Q Consensus 888 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~ga~l~i~~~~~~~~~~~~~~~~ 956 (975)
++|-.+||+++|-|+||.+++||.+.+...++|||||||||+..+|.+|++.+++.....+..|+|.+-
T Consensus 236 ~~fn~~n~lslisRahqlvm~g~nW~~~~~~vtiFSapnycYrcgn~a~i~e~d~~~~~~f~q~~psp~ 304 (319)
T KOG0371|consen 236 EQFNHKNGLSLISRAHQLVMEGYNWYHLWNVVTIFSAPNYCYRCGNQAAIMERDDTKNYDFLQFDPSPR 304 (319)
T ss_pred HHhhccCCchHhHHHHHHHhcccceeeecceeEEccCCchhhccccHHHHhhhhhccCcceEEecCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999998443
No 16
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=100.00 E-value=3.2e-60 Score=495.88 Aligned_cols=275 Identities=37% Similarity=0.650 Sum_probs=250.3
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCCeeeecCCEEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHH
Q 002047 670 FLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLE 749 (975)
Q Consensus 670 ~l~~~~i~~l~~~~~~~~~~ep~~l~l~~~i~vvGDiHG~~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~e 749 (975)
.|+++..++|+.++..+|++|++++++++||.|+|||||||.||+++|+.-|.|... +|+|||||||||.+|+|
T Consensus 60 rl~ee~alrIi~~~a~llr~Eknmi~v~APiTVCGDIHGQf~DLmKLFEVGG~PA~t------~YLFLGDYVDRGyFSiE 133 (517)
T KOG0375|consen 60 RLEEEQALRIINEGAALLRQEKNMIEVEAPITVCGDIHGQFFDLMKLFEVGGSPANT------RYLFLGDYVDRGYFSIE 133 (517)
T ss_pred chhHHHHHHHHHHHHHHHhcCCceEeccCCeeEecccchHHHHHHHHHHccCCcccc------eeEeeccccccceeeee
Confidence 478999999999999999999999999999999999999999999999998877655 89999999999999999
Q ss_pred HHHHHHHhhhcCCCCEEEEeccccccchhhhcCChHHHHHHhCCcccchhhhhhhccccccceEEEEcceEEEecCCccC
Q 002047 750 TITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGR 829 (975)
Q Consensus 750 vl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHgGi~~ 829 (975)
|+.+|.+||+.||..+++||||||++.+...|.|..||..||.+ .+|+++.+.|+.|||||+.++.+||||||++|
T Consensus 134 CvlYLwsLKi~yp~tl~lLRGNHECrHLT~YFTFKqEc~iKYse----~vYdaCmesFd~LPLAAlmNqQflCVHGGlSP 209 (517)
T KOG0375|consen 134 CVLYLWSLKINYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSE----RVYDACMESFDCLPLAALMNQQFLCVHGGLSP 209 (517)
T ss_pred hHHHHHHHhcCCCCeEEEecCCcchhhhHhHhhHHHHHhHhccH----HHHHHHHHHhccchHHHHhcCceEEecCCCCc
Confidence 99999999999999999999999999999999999999999965 59999999999999999999999999999999
Q ss_pred cccCHhhhhhccCCcccCCCCcceeccccCCCCCCCC----CCCcccC-CCCCceeeeCHHHHHHHHHHcCCeEEEEecc
Q 002047 830 SINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDS----VEGLRPN-ARGPGLVTFGPDRVMEFCNNNDLQLIVRAHE 904 (975)
Q Consensus 830 ~~~~~~~i~~i~rp~~~~~~~~~~~dllWsdP~~~~~----~~~~~~n-~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~ 904 (975)
.+.+++||++|.|..++|.-+ .+||||||||.++.. .+.|.+| .||+. +.|.-.++.+||+.|||--|||+||
T Consensus 210 Ei~tl~DIr~l~RF~EpPa~G-pmCDLLWsDPlEdfgnek~~e~f~hNsvRGCS-yfysy~A~C~FLq~nnLLSIiRAHE 287 (517)
T KOG0375|consen 210 EIHTLDDIRKLDRFKEPPAFG-PMCDLLWSDPLEDFGNEKTSEHFTHNSVRGCS-YFYSYPAVCEFLQNNNLLSIIRAHE 287 (517)
T ss_pred ccccHHHHHhhhhccCCCccC-cchhhhccChhhhccccccccccccCcccccc-ceechHHHHHHHHhCCchhhhhhhh
Confidence 999999999999999988766 999999999987432 2356666 89998 7899999999999999999999999
Q ss_pred ccccceEEecCC------eEEEEeccccccCCCCCcEEEEEEcCCceEEeEEecCCCCC
Q 002047 905 CVMDGFERFAQG------HLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPA 957 (975)
Q Consensus 905 ~~~~G~~~~~~~------~~iTvfSa~~y~~~~~n~ga~l~i~~~~~~~~~~~~~~~~~ 957 (975)
.++.||..+-.. .||||||||||.+..+|++|||..+.++ +-.+++...|-+
T Consensus 288 AQDaGYRMYrksqttGFPSLiTiFSAPNYLDvYnNKAAvLKYEnNV-MNIRQFncSPHP 345 (517)
T KOG0375|consen 288 AQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNV-MNIRQFNCSPHP 345 (517)
T ss_pred hhhhhhhhhhcccccCCchheeeecCCchhhhhccHHHHhhhhccc-ceeeccCCCCCC
Confidence 999999876554 4899999999999999999999998764 344555544433
No 17
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-52 Score=447.61 Aligned_cols=280 Identities=33% Similarity=0.637 Sum_probs=247.7
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeec----CCEEEEecCCCCHHHHHHHHHHhCCC
Q 002047 648 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLK----APIKIFGDLHGQFGDLMRLFDEYGSP 723 (975)
Q Consensus 648 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~~~~~ep~~l~l~----~~i~vvGDiHG~~~~L~~ll~~~g~~ 723 (975)
++.+|+.+... ..|.+..++.|+.+|+++|++-|++-++. ..|.||||+||.++||+-||-+.|+|
T Consensus 121 i~~lieaFk~k----------q~LH~kYVl~iL~EakK~lkqmPnis~isTs~S~qVTiCGDLHGklDDL~~I~yKNGlP 190 (631)
T KOG0377|consen 121 IDLLIEAFKKK----------QRLHPKYVLLILREAKKSLKQMPNISRISTSVSQQVTICGDLHGKLDDLLVILYKNGLP 190 (631)
T ss_pred HHHHHHHHHHh----------hhccHHHHHHHHHHHHHHHHhCCCCCccccccccceEEeccccccccceEEEEecCCCC
Confidence 56667665432 25778889999999999999999999985 57999999999999999999999999
Q ss_pred CCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccccchhhhcCChHHHHHHhCCcccchhhhhh
Q 002047 724 STAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRI 803 (975)
Q Consensus 724 ~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~ 803 (975)
+... -|||.||+||||.+|+|||++|+++.+.||..|||-|||||+..+|..|||-.|+..||... +..+...+
T Consensus 191 S~~n-----pYvFNGDFVDRGk~siEvLmiL~a~~lv~P~~~~LNRGNHED~mmNlRYGF~kEv~~KYk~~-~k~Ilr~l 264 (631)
T KOG0377|consen 191 SSSN-----PYVFNGDFVDRGKRSIEVLMILFALYLVYPNAVHLNRGNHEDHMMNLRYGFIKEVESKYKRH-GKRILRFL 264 (631)
T ss_pred CCCC-----CeeecCchhhccccchhhHHHHHHHHhcCchhhhccCCchHHHHHHHHHhHHHHHHHHhhhc-ccHHHHHH
Confidence 9774 79999999999999999999999999999999999999999999999999999999999764 67788999
Q ss_pred hccccccceEEEEcceEEEecCCccCcccCHhhhhhccC---------Cccc--CC----------CCcceeccccCCCC
Q 002047 804 NRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQR---------PITM--EA----------GSIVLMDLLWSDPT 862 (975)
Q Consensus 804 ~~~f~~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~r---------p~~~--~~----------~~~~~~dllWsdP~ 862 (975)
.++|.|||++.+|+.+||+|||||+.. +.++-|.+|+| |.+. +. +++.+.|+|||||.
T Consensus 265 eevy~WLPi~tiid~~ilvvHGGiSd~-Tdl~ll~kIeR~k~~Svlrpp~ek~~d~e~~s~~vg~dEW~Qi~DImWSDP~ 343 (631)
T KOG0377|consen 265 EEVYRWLPIGTIIDSRILVVHGGISDS-TDLDLLDKIERGKYVSVLRPPTEKGRDGEKLSKAVGVDEWQQIFDIMWSDPQ 343 (631)
T ss_pred HHHHHhcchhhhcccceEEEecCcccc-hhHHHHhhhhccceeEEecCCcccCccCCchhhhcChHHHHHHHHHHhcCcc
Confidence 999999999999999999999999876 67777777665 2211 00 23457899999998
Q ss_pred CCCCCCCcccC-CCCCceeeeCHHHHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEeccccccCCCCCcEEEEEEc
Q 002047 863 ENDSVEGLRPN-ARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLG 941 (975)
Q Consensus 863 ~~~~~~~~~~n-~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~ga~l~i~ 941 (975)
.+ .|..|| .||.| ++||+|++.+||++++++++||+|||.++|||+.+|++|+|||||+||.....|+||++.+.
T Consensus 344 ~~---~GC~pNt~RGgG-~yFGpDvT~~~Lqk~~l~~liRSHECKpeGyEf~Hd~kvlTiFSASNYYe~GSNrGAYikl~ 419 (631)
T KOG0377|consen 344 AT---MGCVPNTLRGGG-CYFGPDVTDNFLQKHRLSYLIRSHECKPEGYEFCHDNKVLTIFSASNYYEIGSNRGAYIKLG 419 (631)
T ss_pred cc---cCCCcccccCCc-ceeCchHHHHHHHHhCceeeeeecccCCCcceeeeCCeEEEEEeccchheecCCCceEEEeC
Confidence 64 677788 79999 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEe
Q 002047 942 RDLVVVP 948 (975)
Q Consensus 942 ~~~~~~~ 948 (975)
+.+.-.+
T Consensus 420 ~~~~Phf 426 (631)
T KOG0377|consen 420 NQLTPHF 426 (631)
T ss_pred CCCCchH
Confidence 8876444
No 18
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=100.00 E-value=2.5e-45 Score=405.48 Aligned_cols=277 Identities=39% Similarity=0.672 Sum_probs=251.4
Q ss_pred cCHHHHHHHHHHHHHHHhcCCCeeeecC----CEEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCC
Q 002047 671 LDCNEIADLCDSAERIFSSEPSVLQLKA----PIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQH 746 (975)
Q Consensus 671 l~~~~i~~l~~~~~~~~~~ep~~l~l~~----~i~vvGDiHG~~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~ 746 (975)
|...-+..|+..+..+++++|+++++.. .+.|+||+||||.||+++|...|.|+... .|+|.||+||||..
T Consensus 183 L~~k~a~~i~~~~~~~~~~l~~~ve~~~~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t~-----~ylfngdfv~rgs~ 257 (476)
T KOG0376|consen 183 LPKKYAYSILDLAKTILRKLPSLVEISVPGDVKISVCGDTHGQFYDLLNIFELNGLPSETN-----PYLFNGDFVDRGSW 257 (476)
T ss_pred cccccceeeHHHHhhHHhcCCcceEeecCCCceEEecCCccccccchhhhHhhcCCCCCcc-----cccccCceeeeccc
Confidence 4455567899999999999999999864 48999999999999999999999998764 89999999999999
Q ss_pred hHHHHHHHHHhhhcCCCCEEEEeccccccchhhhcCChHHHHHHhCCcccchhhhhhhccccccceEEEEcceEEEecCC
Q 002047 747 SLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGG 826 (975)
Q Consensus 747 s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHgG 826 (975)
+.|++..+++.|+.+|+++|++|||||...++..|||..|+..+|.+. .+..+.++|.+||++-+|+++++.+|||
T Consensus 258 s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~~kyte~----~~~~f~~~f~~LPl~~~i~~~~~~~hgg 333 (476)
T KOG0376|consen 258 SVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVKAKYTEE----MFNLFSEVFIWLPLAHLINNKVLVMHGG 333 (476)
T ss_pred ceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchhhhhHHH----HHHhhhhhhccccchhhhcCceEEEecC
Confidence 999999999999999999999999999999999999999999999764 6777779999999999999999999999
Q ss_pred ccC-cccCHhhhhhccCCcccCCCCcceeccccCCCCCCCCCCCcccCCCCCceeeeCHHHHHHHHHHcCCeEEEEeccc
Q 002047 827 IGR-SINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHEC 905 (975)
Q Consensus 827 i~~-~~~~~~~i~~i~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~ 905 (975)
+.. .-.++++|++|.|+...+ +...++|+|||||.. ..|..++.||.| ..||+|++++||+.|++++|||+||+
T Consensus 334 lf~~~~v~l~d~r~i~r~~~~~-~~~~~~~~lws~pq~---~~g~s~S~r~~g-~~fG~d~t~~f~~~n~l~~i~rshe~ 408 (476)
T KOG0376|consen 334 LFSPDGVTLEDFRNIDRFEQPP-EEGLMCELLWSDPQP---ANGRSPSKRGVG-LQFGPDVTERFLQDNNLDKIIRSHEV 408 (476)
T ss_pred cCCCCCccHHHHHhhhhccCCc-ccccccccccCCCcc---ccCCCccccCce-eeeCCCchhhHHhhcchHHHhhcccc
Confidence 964 446899999999995444 444999999999986 478999999999 68999999999999999999999999
Q ss_pred cccceEEecCCeEEEEeccccccCCCCCcEEEEEEc-CCceEEeEEecCCCCCCCCC
Q 002047 906 VMDGFERFAQGHLITLFSATNYCGTANNAGAILVLG-RDLVVVPKLIHPLPPAISSP 961 (975)
Q Consensus 906 ~~~G~~~~~~~~~iTvfSa~~y~~~~~n~ga~l~i~-~~~~~~~~~~~~~~~~~~~~ 961 (975)
.+.||++.++|+|+|||||||||...+|.||++.++ ++++.++..+.++|-.-.-|
T Consensus 409 ~d~gy~~eh~g~l~tvfsapnycd~~~n~ga~i~~~~~~~~p~~~~~e~vp~~~~~~ 465 (476)
T KOG0376|consen 409 KDEGYEVEHSGKLITVFSAPNYCDQMGNKGAFIHLEPDDLTPNFYTFEAVPHPDVKP 465 (476)
T ss_pred CCCceeeecCCcEEEEecCcchhhhcCCcceEEEecCCCCccceeecccCCCCCCCC
Confidence 999999999999999999999999999999999998 78888888888877655433
No 19
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=6.1e-37 Score=347.48 Aligned_cols=305 Identities=24% Similarity=0.276 Sum_probs=230.6
Q ss_pred eEeecCCCCCCCCcCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcEEEEECCC
Q 002047 80 AVIEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLT 159 (975)
Q Consensus 80 ~~~~~~~~~P~pR~ght~t~~~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t 159 (975)
.+....+..|.||.+|+++++ +++||||||...... ...+++|+||+.+
T Consensus 11 ~~~~~~~~~P~pR~~h~~~~~------------~~~iyv~GG~~~~~~-------------------~~~~~~~~yd~~~ 59 (341)
T PLN02153 11 KVEQKGGKGPGPRCSHGIAVV------------GDKLYSFGGELKPNE-------------------HIDKDLYVFDFNT 59 (341)
T ss_pred EecCCCCCCCCCCCcceEEEE------------CCEEEEECCccCCCC-------------------ceeCcEEEEECCC
Confidence 333344568999999999998 789999999853211 1568999999999
Q ss_pred CcEEEecCCCCCCCC-ccceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEec--CCCCCCCcccEEEEe
Q 002047 160 NKWSRITPFGEPPTP-RAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQ--GPGPGPRYGHVMALV 236 (975)
Q Consensus 160 ~~W~~l~~~g~~P~p-R~~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~--g~~P~~R~~h~~~~~ 236 (975)
++|+.+++++..|.. +.+|++++++++||+|||.... ...+++++||+.+++ |+.++.. ...|.+|.+|+++++
T Consensus 60 ~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~t~~--W~~~~~~~~~~~p~~R~~~~~~~~ 136 (341)
T PLN02153 60 HTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEK-REFSDFYSYDTVKNE--WTFLTKLDEEGGPEARTFHSMASD 136 (341)
T ss_pred CEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCC-CccCcEEEEECCCCE--EEEeccCCCCCCCCCceeeEEEEE
Confidence 999999887644443 4589999999999999998544 346899999999875 9988732 123889999999999
Q ss_pred CCcEEEEEcCCCCC------CCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCC-------
Q 002047 237 GQRYLMAIGGNDGK------RPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDAS------- 303 (975)
Q Consensus 237 ~~~~lyV~GG~~g~------~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~------- 303 (975)
++ +||||||.+.. ..++++++||+.++ +|+.+++++..|.+|..|.++ +.+++|||+||.+..
T Consensus 137 ~~-~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~--~W~~l~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~gG~~ 212 (341)
T PLN02153 137 EN-HVYVFGGVSKGGLMKTPERFRTIEAYNIADG--KWVQLPDPGENFEKRGGAGFA-VVQGKIWVVYGFATSILPGGKS 212 (341)
T ss_pred CC-EEEEECCccCCCccCCCcccceEEEEECCCC--eEeeCCCCCCCCCCCCcceEE-EECCeEEEEeccccccccCCcc
Confidence 88 89999998642 24689999999999 999999887666666666554 568999999997521
Q ss_pred CCCccceEEeecCCCCeEEEEECCCCCCCCcceeeEEEeCCEEEEEcCcCCCC-----CccccCCcEEEEECCCCeEEEc
Q 002047 304 SVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGG-----RMVEDSSSVAVLDTAAGVWCDT 378 (975)
Q Consensus 304 ~~~l~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v~~~~~L~V~GG~~~~~-----~~~~~~~dv~~yD~~t~~W~~v 378 (975)
...+++++.|++.++ +|+.....+..|.+|..|++++++++||||||..... ......+++|+||+++++|+.+
T Consensus 213 ~~~~~~v~~yd~~~~-~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~ 291 (341)
T PLN02153 213 DYESNAVQFFDPASG-KWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKL 291 (341)
T ss_pred ceecCceEEEEcCCC-cEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEec
Confidence 123678999988866 4444433345688999999999999999999974211 0112367999999999999998
Q ss_pred ccCcCCCCCCCCccccCCCCCccCCCccceeEEEEE--CCEEEEEcCCCC-CCCccceEeeecc
Q 002047 379 KSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAV--GDLIFIYGGLRG-GVLLDDLLVAEDL 439 (975)
Q Consensus 379 ~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~--~~~LyV~GG~~~-~~~l~Dv~~ld~~ 439 (975)
.....+ ..|.+|++|+++.+ +++||||||+++ ...++|+|+++..
T Consensus 292 ~~~~~~----------------~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~~~~~~~ 339 (341)
T PLN02153 292 GECGEP----------------AMPRGWTAYTTATVYGKNGLLMHGGKLPTNERTDDLYFYAVN 339 (341)
T ss_pred cCCCCC----------------CCCCccccccccccCCcceEEEEcCcCCCCccccceEEEecc
Confidence 754222 12345555555554 348999999866 4789999998753
No 20
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=8.8e-37 Score=359.26 Aligned_cols=304 Identities=21% Similarity=0.309 Sum_probs=239.7
Q ss_pred eEeecCCCCCCCCcCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcEEEEECCC
Q 002047 80 AVIEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLT 159 (975)
Q Consensus 80 ~~~~~~~~~P~pR~ght~t~~~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t 159 (975)
......++.|.||++|+++++ +++||||||....... ..+++|+||+.+
T Consensus 154 ~~~~~~~~~P~pR~~h~~~~~------------~~~iyv~GG~~~~~~~-------------------~~~~v~~yD~~~ 202 (470)
T PLN02193 154 IKVEQKGEGPGLRCSHGIAQV------------GNKIYSFGGEFTPNQP-------------------IDKHLYVFDLET 202 (470)
T ss_pred EEcccCCCCCCCccccEEEEE------------CCEEEEECCcCCCCCC-------------------eeCcEEEEECCC
Confidence 333455668999999999998 7899999997532210 457899999999
Q ss_pred CcEEEecCCCCCCC-CccceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEeCC
Q 002047 160 NKWSRITPFGEPPT-PRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQ 238 (975)
Q Consensus 160 ~~W~~l~~~g~~P~-pR~~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~~~ 238 (975)
++|..++.+++.|. +|.+|++++++++||||||.... ..++++|+||+.+++ |+.+.+.+..|.+|+.|+++++++
T Consensus 203 ~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~-~~~ndv~~yD~~t~~--W~~l~~~~~~P~~R~~h~~~~~~~ 279 (470)
T PLN02193 203 RTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS-RQYNGFYSFDTTTNE--WKLLTPVEEGPTPRSFHSMAADEE 279 (470)
T ss_pred CEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCC-CCCccEEEEECCCCE--EEEcCcCCCCCCCccceEEEEECC
Confidence 99999887765565 46799999999999999998643 357899999999975 999985555699999999999988
Q ss_pred cEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCccceEEeecCCC
Q 002047 239 RYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRD 318 (975)
Q Consensus 239 ~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~d~~~~~~~~~ 318 (975)
+||||||.++...++++++||+.++ +|+.++.....|.+|..|.++ +.+++||++||.++. .+++++.|++.++
T Consensus 280 -~iYv~GG~~~~~~~~~~~~yd~~t~--~W~~~~~~~~~~~~R~~~~~~-~~~gkiyviGG~~g~--~~~dv~~yD~~t~ 353 (470)
T PLN02193 280 -NVYVFGGVSATARLKTLDSYNIVDK--KWFHCSTPGDSFSIRGGAGLE-VVQGKVWVVYGFNGC--EVDDVHYYDPVQD 353 (470)
T ss_pred -EEEEECCCCCCCCcceEEEEECCCC--EEEeCCCCCCCCCCCCCcEEE-EECCcEEEEECCCCC--ccCceEEEECCCC
Confidence 8999999988888999999999999 999998766556666665554 558999999998654 4789999988866
Q ss_pred CeEEEEECCCCCCCCcceeeEEEeCCEEEEEcCcCCCCC-----ccccCCcEEEEECCCCeEEEcccCcCCCCCCCCccc
Q 002047 319 GRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGR-----MVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSAD 393 (975)
Q Consensus 319 ~~W~w~~~~g~~P~~R~~hs~v~~~~~L~V~GG~~~~~~-----~~~~~~dv~~yD~~t~~W~~v~~~~~~p~~~~~~~~ 393 (975)
+|+.....+..|.+|..|++++++++|||+||...... .....+++|+||+.+++|+.+..+...
T Consensus 354 -~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~--------- 423 (470)
T PLN02193 354 -KWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEE--------- 423 (470)
T ss_pred -EEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCC---------
Confidence 55444444556889999999999999999999864211 012367899999999999998866321
Q ss_pred cCCCCCccCCCccceeEEE--EE-C-CEEEEEcCCCC-CCCccceEeeecc
Q 002047 394 AAGGDAAVELTRRCRHAAA--AV-G-DLIFIYGGLRG-GVLLDDLLVAEDL 439 (975)
Q Consensus 394 ~~~~~~~~~p~~R~~hsa~--~~-~-~~LyV~GG~~~-~~~l~Dv~~ld~~ 439 (975)
...|.+|..|+++ .+ + +.|+||||+++ +.+++|+|.++..
T Consensus 424 ------~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~~~~ 468 (470)
T PLN02193 424 ------EETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFYGID 468 (470)
T ss_pred ------CCCCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEEecC
Confidence 1235678777543 23 3 46999999875 5889999999754
No 21
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=2.4e-37 Score=314.20 Aligned_cols=300 Identities=24% Similarity=0.392 Sum_probs=247.0
Q ss_pred CCCcCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcEEEEECCCCcEEEecCC-
Q 002047 90 GPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRITPF- 168 (975)
Q Consensus 90 ~pR~ght~t~~~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~- 168 (975)
+-|.+|+++++ |++||-|||+-........ --=|++.++..+.+|+++++.
T Consensus 12 PrRVNHAavaV------------G~riYSFGGYCsGedy~~~----------------~piDVH~lNa~~~RWtk~pp~~ 63 (392)
T KOG4693|consen 12 PRRVNHAAVAV------------GSRIYSFGGYCSGEDYDAK----------------DPIDVHVLNAENYRWTKMPPGI 63 (392)
T ss_pred cccccceeeee------------cceEEecCCcccccccccC----------------CcceeEEeeccceeEEecCccc
Confidence 46899999999 7999999998654432211 223899999999999999772
Q ss_pred ---------CCCCCCccceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEeCCc
Q 002047 169 ---------GEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQR 239 (975)
Q Consensus 169 ---------g~~P~pR~~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~~~~ 239 (975)
...|.-|++|+.+.+.+++|++||.++.....+-+|.||++++ +|.+..+.|..|.+|-+|++|++++
T Consensus 64 ~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~--~W~~p~v~G~vPgaRDGHsAcV~gn- 140 (392)
T KOG4693|consen 64 TKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETN--VWKKPEVEGFVPGARDGHSACVWGN- 140 (392)
T ss_pred ccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccc--cccccceeeecCCccCCceeeEECc-
Confidence 1247789999999999999999999987777899999999998 5999999999999999999999998
Q ss_pred EEEEEcCCCC--CCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCC-------ccce
Q 002047 240 YLMAIGGNDG--KRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVP-------LASA 310 (975)
Q Consensus 240 ~lyV~GG~~g--~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~-------l~d~ 310 (975)
.+|||||+.. +...+|++.||+.+. +|+.+...+.+|.-|-.|+++++ ++++|||||+...... +.+.
T Consensus 141 ~MyiFGGye~~a~~FS~d~h~ld~~Tm--tWr~~~Tkg~PprwRDFH~a~~~-~~~MYiFGGR~D~~gpfHs~~e~Yc~~ 217 (392)
T KOG4693|consen 141 QMYIFGGYEEDAQRFSQDTHVLDFATM--TWREMHTKGDPPRWRDFHTASVI-DGMMYIFGGRSDESGPFHSIHEQYCDT 217 (392)
T ss_pred EEEEecChHHHHHhhhccceeEeccce--eeeehhccCCCchhhhhhhhhhc-cceEEEeccccccCCCccchhhhhcce
Confidence 8999999954 677899999999999 99999999997777777777666 6999999998654322 2233
Q ss_pred EEeecCCCCeEEEEECCCCCCCCcceeeEEEeCCEEEEEcCcCCCCCccccCCcEEEEECCCCeEEEcccCcCCCCCCCC
Q 002047 311 YGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRY 390 (975)
Q Consensus 311 ~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v~~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~p~~~~~ 390 (975)
..+.+..++.|.-....++.|.+|..|++.+++++||+|||+++.-. ..++++|+||++|..|..+...+.-
T Consensus 218 i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln--~HfndLy~FdP~t~~W~~I~~~Gk~------ 289 (392)
T KOG4693|consen 218 IMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLN--VHFNDLYCFDPKTSMWSVISVRGKY------ 289 (392)
T ss_pred eEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhh--hhhcceeecccccchheeeeccCCC------
Confidence 33445556677666666788999999999999999999999987654 4589999999999999998876443
Q ss_pred ccccCCCCCccCCCccceeEEEEECCEEEEEcCCCC-------------------CCCccceEeeecccccc
Q 002047 391 SADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRG-------------------GVLLDDLLVAEDLAAAE 443 (975)
Q Consensus 391 ~~~~~~~~~~~~p~~R~~hsa~~~~~~LyV~GG~~~-------------------~~~l~Dv~~ld~~~~~~ 443 (975)
|.+|.++++++.+++||+|||... -..++|+.+||..+..+
T Consensus 290 ------------P~aRRRqC~~v~g~kv~LFGGTsP~~~~~~Spt~~~G~~~~~~LiD~SDLHvLDF~PsLK 349 (392)
T KOG4693|consen 290 ------------PSARRRQCSVVSGGKVYLFGGTSPLPCHPLSPTNYNGMISPSGLIDLSDLHVLDFAPSLK 349 (392)
T ss_pred ------------CCcccceeEEEECCEEEEecCCCCCCCCCCCccccCCCCCcccccccccceeeecChhHH
Confidence 679999999999999999999432 03468888888776443
No 22
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.7e-34 Score=344.19 Aligned_cols=264 Identities=23% Similarity=0.395 Sum_probs=241.5
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcEEEEECCCCcEEEecCCCCCCCCccceEEEEeCCEEEEEec
Q 002047 113 GPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGG 192 (975)
Q Consensus 113 ~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~~~iyv~GG 192 (975)
.+.||++||...... ..+.+.+||+.++.|..++++ |.+|..+++++++++||++||
T Consensus 284 ~~~l~~vGG~~~~~~--------------------~~~~ve~yd~~~~~w~~~a~m---~~~r~~~~~~~~~~~lYv~GG 340 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQ--------------------SLRSVECYDPKTNEWSSLAPM---PSPRCRVGVAVLNGKLYVVGG 340 (571)
T ss_pred CCeEEEECCCCCCCc--------------------ccceeEEecCCcCcEeecCCC---CcccccccEEEECCEEEEEcc
Confidence 578999999976221 788999999999999999998 899999999999999999999
Q ss_pred cCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEcc
Q 002047 193 IGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLE 272 (975)
Q Consensus 193 ~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~ 272 (975)
.+.+...++++|+||+.++. |+.++ +|+.+|.+++++++++ +||++||.+|...++++++||+.++ +|+.++
T Consensus 341 ~~~~~~~l~~ve~YD~~~~~--W~~~a---~M~~~R~~~~v~~l~g-~iYavGG~dg~~~l~svE~YDp~~~--~W~~va 412 (571)
T KOG4441|consen 341 YDSGSDRLSSVERYDPRTNQ--WTPVA---PMNTKRSDFGVAVLDG-KLYAVGGFDGEKSLNSVECYDPVTN--KWTPVA 412 (571)
T ss_pred ccCCCcccceEEEecCCCCc--eeccC---CccCccccceeEEECC-EEEEEeccccccccccEEEecCCCC--cccccC
Confidence 97556678999999999985 99998 9999999999999998 8999999999999999999999999 999999
Q ss_pred CCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCccceEEeecCCCCeEEEEECCCCCCCCcceeeEEEeCCEEEEEcCc
Q 002047 273 PEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGA 352 (975)
Q Consensus 273 ~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v~~~~~L~V~GG~ 352 (975)
++.. +++.+++++.+++||++||.++....++.+.+|++.++ +|...+++ +.+|.++++++++++||++||+
T Consensus 413 ~m~~----~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~---~W~~~~~M-~~~R~~~g~a~~~~~iYvvGG~ 484 (571)
T KOG4441|consen 413 PMLT----RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN---TWTLIAPM-NTRRSGFGVAVLNGKIYVVGGF 484 (571)
T ss_pred CCCc----ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCC---ceeecCCc-ccccccceEEEECCEEEEECCc
Confidence 9876 58888889999999999999888778999999999999 89999988 6999999999999999999999
Q ss_pred CCCCCccccCCcEEEEECCCCeEEEcccCcCCCCCCCCccccCCCCCccCCCccceeEEEEECCEEEEEcCCCCCCCccc
Q 002047 353 LGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRGGVLLDD 432 (975)
Q Consensus 353 ~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~LyV~GG~~~~~~l~D 432 (975)
++... ...+++||+++++|+.+..+ +.+|..+++++++++||++||+++..+++.
T Consensus 485 ~~~~~----~~~VE~ydp~~~~W~~v~~m---------------------~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ 539 (571)
T KOG4441|consen 485 DGTSA----LSSVERYDPETNQWTMVAPM---------------------TSPRSAVGVVVLGGKLYAVGGFDGNNNLNT 539 (571)
T ss_pred cCCCc----cceEEEEcCCCCceeEcccC---------------------ccccccccEEEECCEEEEEecccCccccce
Confidence 88332 66699999999999999888 569999999999999999999999999999
Q ss_pred eEeeeccc
Q 002047 433 LLVAEDLA 440 (975)
Q Consensus 433 v~~ld~~~ 440 (975)
+..+|...
T Consensus 540 ve~ydp~~ 547 (571)
T KOG4441|consen 540 VECYDPET 547 (571)
T ss_pred eEEcCCCC
Confidence 99997543
No 23
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=4.7e-33 Score=327.71 Aligned_cols=277 Identities=26% Similarity=0.388 Sum_probs=224.6
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCc--EEEEECCC----CcEEEecCCCCCCCCccceEEEEeCCE
Q 002047 113 GPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATAD--VHCYDVLT----NKWSRITPFGEPPTPRAAHVATAVGTM 186 (975)
Q Consensus 113 ~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--v~~yD~~t----~~W~~l~~~g~~P~pR~~hsa~~~~~~ 186 (975)
+++|+.|+|.... .++. +|.+++.+ ++|.++.++++.|.||++|++++++++
T Consensus 120 ~~~ivgf~G~~~~----------------------~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~ 177 (470)
T PLN02193 120 GGKIVGFHGRSTD----------------------VLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNK 177 (470)
T ss_pred CCeEEEEeccCCC----------------------cEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCE
Confidence 6899999997543 2333 35557644 799999988878999999999999999
Q ss_pred EEEEeccCCC-CCccccEEEEEcCCCCCcEEEEEecCCCCC-CCcccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCC
Q 002047 187 VVIQGGIGPA-GLSAEDLHVLDLTQQRPRWHRVVVQGPGPG-PRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAK 264 (975)
Q Consensus 187 iyv~GG~~~~-~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~-~R~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~ 264 (975)
|||+||.... ....+++|+||+.+++ |+.++..+.+|. .|.+|+++++++ +||||||.++...++++|+||+.++
T Consensus 178 iyv~GG~~~~~~~~~~~v~~yD~~~~~--W~~~~~~g~~P~~~~~~~~~v~~~~-~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 178 IYSFGGEFTPNQPIDKHLYVFDLETRT--WSISPATGDVPHLSCLGVRMVSIGS-TLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred EEEECCcCCCCCCeeCcEEEEECCCCE--EEeCCCCCCCCCCcccceEEEEECC-EEEEECCCCCCCCCccEEEEECCCC
Confidence 9999997533 3345789999999975 998877666776 467999999998 8999999988778999999999999
Q ss_pred CcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCccceEEeecCCCCeEEEEECCCCCCCCcceeeEEEeCC
Q 002047 265 PYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNA 344 (975)
Q Consensus 265 ~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v~~~~ 344 (975)
+|+++.+++..|.+|..|++++ .+++||||||.+... .+++++.|++.++ +|+....++.+|.+|.+|+++++++
T Consensus 255 --~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~-~~~~~~~yd~~t~-~W~~~~~~~~~~~~R~~~~~~~~~g 329 (470)
T PLN02193 255 --EWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATA-RLKTLDSYNIVDK-KWFHCSTPGDSFSIRGGAGLEVVQG 329 (470)
T ss_pred --EEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCC-CcceEEEEECCCC-EEEeCCCCCCCCCCCCCcEEEEECC
Confidence 9999998877677777776554 689999999987654 6789999988766 4443333344578899999999999
Q ss_pred EEEEEcCcCCCCCccccCCcEEEEECCCCeEEEcccCcCCCCCCCCccccCCCCCccCCCccceeEEEEECCEEEEEcCC
Q 002047 345 RLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGL 424 (975)
Q Consensus 345 ~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~LyV~GG~ 424 (975)
+|||+||.++. ..+++++||+.+++|+++..++.. |.+|..|++++++++||||||.
T Consensus 330 kiyviGG~~g~-----~~~dv~~yD~~t~~W~~~~~~g~~------------------P~~R~~~~~~~~~~~iyv~GG~ 386 (470)
T PLN02193 330 KVWVVYGFNGC-----EVDDVHYYDPVQDKWTQVETFGVR------------------PSERSVFASAAVGKHIVIFGGE 386 (470)
T ss_pred cEEEEECCCCC-----ccCceEEEECCCCEEEEeccCCCC------------------CCCcceeEEEEECCEEEEECCc
Confidence 99999998643 268899999999999998766332 5689999999999999999997
Q ss_pred CC---------CCCccceEeeeccccc
Q 002047 425 RG---------GVLLDDLLVAEDLAAA 442 (975)
Q Consensus 425 ~~---------~~~l~Dv~~ld~~~~~ 442 (975)
.. ..+++|+|+||.....
T Consensus 387 ~~~~~~~~~~~~~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 387 IAMDPLAHVGPGQLTDGTFALDTETLQ 413 (470)
T ss_pred cCCccccccCccceeccEEEEEcCcCE
Confidence 53 2467899999986543
No 24
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=3.1e-33 Score=304.46 Aligned_cols=309 Identities=27% Similarity=0.427 Sum_probs=257.9
Q ss_pred eeeEeecCCCCCCCCcCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcEEEEEC
Q 002047 78 VNAVIEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDV 157 (975)
Q Consensus 78 ~~~~~~~~~~~P~pR~ght~t~~~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~ 157 (975)
|..+....|..|.||.||-++++ ...|++|||-+. |+.++++.|+.
T Consensus 19 WrrV~~~tGPvPrpRHGHRAVai------------kELiviFGGGNE----------------------GiiDELHvYNT 64 (830)
T KOG4152|consen 19 WRRVQQSTGPVPRPRHGHRAVAI------------KELIVIFGGGNE----------------------GIIDELHVYNT 64 (830)
T ss_pred eEEEecccCCCCCccccchheee------------eeeEEEecCCcc----------------------cchhhhhhhcc
Confidence 33455778999999999999999 678999999654 28899999999
Q ss_pred CCCcEEEecCCCCCCCCccceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEe----cCCCCCCCcccEE
Q 002047 158 LTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVV----QGPGPGPRYGHVM 233 (975)
Q Consensus 158 ~t~~W~~l~~~g~~P~pR~~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~----~g~~P~~R~~h~~ 233 (975)
.+++|......|+.|.+-+.|+.++.+++||+|||+..-+.+.||+|.+.... +.|.++.+ .|..|.||-+|+.
T Consensus 65 atnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasR--WeWkrlkp~~p~nG~pPCPRlGHSF 142 (830)
T KOG4152|consen 65 ATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASR--WEWKRLKPKTPKNGPPPCPRLGHSF 142 (830)
T ss_pred ccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHhhhhh--hhHhhcCCCCCCCCCCCCCccCcee
Confidence 99999999999999999999999999999999999998889999998766554 56988764 5789999999999
Q ss_pred EEeCCcEEEEEcCCCC---------CCCCCcEEEEECCCC--CcEEEEccCCCCCCCCcceeEEEEEe-----CCeEEEe
Q 002047 234 ALVGQRYLMAIGGNDG---------KRPLADVWALDTAAK--PYEWRKLEPEGEGPPPCMYATASARS-----DGLLLLC 297 (975)
Q Consensus 234 ~~~~~~~lyV~GG~~g---------~~~~ndv~~yDl~s~--~~~W~~v~~~~~~P~~r~~~~a~~~~-----~g~lyvf 297 (975)
..+++ +.|+|||... -.++||+|.+++.-. -..|......+..|++|-.|+|+.+. ..+||||
T Consensus 143 sl~gn-KcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvy 221 (830)
T KOG4152|consen 143 SLVGN-KCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVY 221 (830)
T ss_pred EEecc-EeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEE
Confidence 99998 8999999722 246999999999743 36899999999999999999999873 2489999
Q ss_pred cCCCCCCCCccceEEeecCCCCeEEEEECCCCCCCCcceeeEEEeCCEEEEEcCcCC----------CCCccccCCcEEE
Q 002047 298 GGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALG----------GGRMVEDSSSVAV 367 (975)
Q Consensus 298 GG~~~~~~~l~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v~~~~~L~V~GG~~~----------~~~~~~~~~dv~~ 367 (975)
||+++- .+.|+|.++.. ...|...+..|..|.||.-|+++.++++||||||+-- ......+.+.+-+
T Consensus 222 GGM~G~--RLgDLW~Ldl~-Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~c 298 (830)
T KOG4152|consen 222 GGMSGC--RLGDLWTLDLD-TLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLAC 298 (830)
T ss_pred cccccc--cccceeEEecc-eeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceee
Confidence 999865 58999999766 4577777888999999999999999999999999721 0111245778899
Q ss_pred EECCCCeEEEcccCcCCCCCCCCccccCCCCCccCCCccceeEEEEECCEEEEEcCCCC-------CCCccceEeeeccc
Q 002047 368 LDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRG-------GVLLDDLLVAEDLA 440 (975)
Q Consensus 368 yD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~LyV~GG~~~-------~~~l~Dv~~ld~~~ 440 (975)
+|+.+..|..+-.... +..-.|.+|.+|+++.++.+||+--|.+| ...+-|+|.||+..
T Consensus 299 lNldt~~W~tl~~d~~--------------ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTek 364 (830)
T KOG4152|consen 299 LNLDTMAWETLLMDTL--------------EDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTEK 364 (830)
T ss_pred eeecchheeeeeeccc--------------cccccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcccC
Confidence 9999999987753311 11225789999999999999999999765 47889999999755
No 25
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=6.7e-32 Score=306.99 Aligned_cols=277 Identities=22% Similarity=0.281 Sum_probs=214.3
Q ss_pred CCCCCCCcCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcEEEEEC--CCCcEE
Q 002047 86 EDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDV--LTNKWS 163 (975)
Q Consensus 86 ~~~P~pR~ght~t~~~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~--~t~~W~ 163 (975)
..+|.||..++++++ +++|||+||.. .+++|+||+ .+++|.
T Consensus 2 ~~lp~~~~~~~~~~~------------~~~vyv~GG~~-------------------------~~~~~~~d~~~~~~~W~ 44 (346)
T TIGR03547 2 PDLPVGFKNGTGAII------------GDKVYVGLGSA-------------------------GTSWYKLDLKKPSKGWQ 44 (346)
T ss_pred CCCCccccCceEEEE------------CCEEEEEcccc-------------------------CCeeEEEECCCCCCCce
Confidence 357899999988888 78999999962 246899997 578899
Q ss_pred EecCCCCCC-CCccceEEEEeCCEEEEEeccCCCC-----CccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEE-Ee
Q 002047 164 RITPFGEPP-TPRAAHVATAVGTMVVIQGGIGPAG-----LSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMA-LV 236 (975)
Q Consensus 164 ~l~~~g~~P-~pR~~hsa~~~~~~iyv~GG~~~~~-----~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~-~~ 236 (975)
.++++ | .+|..|++++++++|||+||..... ..++++|+||+.+++ |+.++ ..+|.+|.+|+++ ++
T Consensus 45 ~l~~~---p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~--W~~~~--~~~p~~~~~~~~~~~~ 117 (346)
T TIGR03547 45 KIADF---PGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNS--WQKLD--TRSPVGLLGASGFSLH 117 (346)
T ss_pred ECCCC---CCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCE--EecCC--CCCCCcccceeEEEEe
Confidence 99887 6 5899999999999999999985322 246899999999985 99986 2467888888887 56
Q ss_pred CCcEEEEEcCCCCCC----------------------------------CCCcEEEEECCCCCcEEEEccCCCCCCCCcc
Q 002047 237 GQRYLMAIGGNDGKR----------------------------------PLADVWALDTAAKPYEWRKLEPEGEGPPPCM 282 (975)
Q Consensus 237 ~~~~lyV~GG~~g~~----------------------------------~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~ 282 (975)
++ +||++||.++.. .++++++||+.++ +|+.+.+++. +++
T Consensus 118 ~g-~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~--~W~~~~~~p~---~~r 191 (346)
T TIGR03547 118 NG-QAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTN--QWRNLGENPF---LGT 191 (346)
T ss_pred CC-EEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCC--ceeECccCCC---CcC
Confidence 66 999999986421 2478999999999 9999987643 245
Q ss_pred eeEEEEEeCCeEEEecCCCCCCCCccceEEeec--CCCCeEEEEECCCCCCCCc-------ceeeEEEeCCEEEEEcCcC
Q 002047 283 YATASARSDGLLLLCGGRDASSVPLASAYGLAK--HRDGRWEWAIAPGVSPSPR-------YQHAAVFVNARLHVSGGAL 353 (975)
Q Consensus 283 ~~~a~~~~~g~lyvfGG~~~~~~~l~d~~~~~~--~~~~~W~w~~~~g~~P~~R-------~~hs~v~~~~~L~V~GG~~ 353 (975)
.+++++..+++|||+||.........+++.|+. .++ +|...+.+ |.+| .+|++++++++|||+||.+
T Consensus 192 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~---~W~~~~~m-~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~ 267 (346)
T TIGR03547 192 AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKL---EWNKLPPL-PPPKSSSQEGLAGAFAGISNGVLLVAGGAN 267 (346)
T ss_pred CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCc---eeeecCCC-CCCCCCccccccEEeeeEECCEEEEeecCC
Confidence 667777789999999998655434455666543 333 67777765 3433 4677889999999999986
Q ss_pred CCCCc-------------cccCCcEEEEECCCCeEEEcccCcCCCCCCCCccccCCCCCccCCCccceeEEEEECCEEEE
Q 002047 354 GGGRM-------------VEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFI 420 (975)
Q Consensus 354 ~~~~~-------------~~~~~dv~~yD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~LyV 420 (975)
..... ......+++||+++++|+.+..+ |.+|..+++++++++|||
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l---------------------p~~~~~~~~~~~~~~iyv 326 (346)
T TIGR03547 268 FPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKL---------------------PQGLAYGVSVSWNNGVLL 326 (346)
T ss_pred CCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCC---------------------CCCceeeEEEEcCCEEEE
Confidence 32110 00124689999999999999887 558889999999999999
Q ss_pred EcCCCC-CCCccceEeee
Q 002047 421 YGGLRG-GVLLDDLLVAE 437 (975)
Q Consensus 421 ~GG~~~-~~~l~Dv~~ld 437 (975)
+||.+. +..++|++.+-
T Consensus 327 ~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 327 IGGENSGGKAVTDVYLLS 344 (346)
T ss_pred EeccCCCCCEeeeEEEEE
Confidence 999775 47899998653
No 26
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-31 Score=321.26 Aligned_cols=245 Identities=13% Similarity=0.151 Sum_probs=208.0
Q ss_pred CcEEEEECCCCcEEEecCCCCCCCCccceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCc
Q 002047 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRY 229 (975)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~ 229 (975)
..+++||+.+++|..++++ |.+|..|++++++++||++||........+++++||+.++. |..++ +||.+|.
T Consensus 272 ~~v~~yd~~~~~W~~l~~m---p~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~--W~~~~---~m~~~R~ 343 (557)
T PHA02713 272 PCILVYNINTMEYSVISTI---PNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKI--HVELP---PMIKNRC 343 (557)
T ss_pred CCEEEEeCCCCeEEECCCC---CccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCe--EeeCC---CCcchhh
Confidence 4789999999999999987 88999999999999999999975444457899999999985 99988 9999999
Q ss_pred ccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCC-----
Q 002047 230 GHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASS----- 304 (975)
Q Consensus 230 ~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~----- 304 (975)
+|+++++++ +||++||.++...++++++||+.++ +|+.+++++.+ +.++++++.+++||++||.++..
T Consensus 344 ~~~~~~~~g-~IYviGG~~~~~~~~sve~Ydp~~~--~W~~~~~mp~~----r~~~~~~~~~g~IYviGG~~~~~~~~~~ 416 (557)
T PHA02713 344 RFSLAVIDD-TIYAIGGQNGTNVERTIECYTMGDD--KWKMLPDMPIA----LSSYGMCVLDQYIYIIGGRTEHIDYTSV 416 (557)
T ss_pred ceeEEEECC-EEEEECCcCCCCCCceEEEEECCCC--eEEECCCCCcc----cccccEEEECCEEEEEeCCCcccccccc
Confidence 999999998 8999999988777899999999999 99999987653 44445566799999999986431
Q ss_pred ------------CCccceEEeecCCCCeEEEEECCCCCCCCcceeeEEEeCCEEEEEcCcCCCCCccccCCcEEEEECCC
Q 002047 305 ------------VPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAA 372 (975)
Q Consensus 305 ------------~~l~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v~~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t 372 (975)
..++.++.|++.++ +|..++++ |.+|..+++++++++|||+||.++... ..+.+++||+++
T Consensus 417 ~~~~~~~~~~~~~~~~~ve~YDP~td---~W~~v~~m-~~~r~~~~~~~~~~~IYv~GG~~~~~~---~~~~ve~Ydp~~ 489 (557)
T PHA02713 417 HHMNSIDMEEDTHSSNKVIRYDTVNN---IWETLPNF-WTGTIRPGVVSHKDDIYVVCDIKDEKN---VKTCIFRYNTNT 489 (557)
T ss_pred cccccccccccccccceEEEECCCCC---eEeecCCC-CcccccCcEEEECCEEEEEeCCCCCCc---cceeEEEecCCC
Confidence 12578999999988 78888776 689999999999999999999875332 134589999999
Q ss_pred -CeEEEcccCcCCCCCCCCccccCCCCCccCCCccceeEEEEECCEEEEEcCCCCCCCccceEeeeccc
Q 002047 373 -GVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRGGVLLDDLLVAEDLA 440 (975)
Q Consensus 373 -~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~LyV~GG~~~~~~l~Dv~~ld~~~ 440 (975)
++|+.+..+ |.+|..+++++++++||++||+++. .++.++|...
T Consensus 490 ~~~W~~~~~m---------------------~~~r~~~~~~~~~~~iyv~Gg~~~~---~~~e~yd~~~ 534 (557)
T PHA02713 490 YNGWELITTT---------------------ESRLSALHTILHDNTIMMLHCYESY---MLQDTFNVYT 534 (557)
T ss_pred CCCeeEcccc---------------------CcccccceeEEECCEEEEEeeecce---eehhhcCccc
Confidence 899999988 6699999999999999999998873 3566666544
No 27
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=5.2e-31 Score=296.80 Aligned_cols=284 Identities=16% Similarity=0.196 Sum_probs=210.9
Q ss_pred CCCcCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcEEEEECCC--CcEEEecC
Q 002047 90 GPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLT--NKWSRITP 167 (975)
Q Consensus 90 ~pR~ght~t~~~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t--~~W~~l~~ 167 (975)
..+.+|.++++ ++.|||+||.+.....- ...| ....++++|+|+... .+|..+.+
T Consensus 2 ~~~~g~~~~~~------------~~~l~v~GG~~~~~~~~---------~~~g--~~~~~~~v~~~~~~~~~~~W~~~~~ 58 (323)
T TIGR03548 2 LGVAGCYAGII------------GDYILVAGGCNFPEDPL---------AEGG--KKKNYKGIYIAKDENSNLKWVKDGQ 58 (323)
T ss_pred CceeeEeeeEE------------CCEEEEeeccCCCCCch---------hhCC--cEEeeeeeEEEecCCCceeEEEccc
Confidence 45678888888 79999999987643100 0001 112678999996332 37999887
Q ss_pred CCCCCCCccceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEE-EEEecCCCCCCCcccEEEEeCCcEEEEEcC
Q 002047 168 FGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWH-RVVVQGPGPGPRYGHVMALVGQRYLMAIGG 246 (975)
Q Consensus 168 ~g~~P~pR~~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~-~v~~~g~~P~~R~~h~~~~~~~~~lyV~GG 246 (975)
+ |.+|..|++++++++||++||.... ...+++|+||+.++. |. .+...+++|.+|..|+++++++ +|||+||
T Consensus 59 l---p~~r~~~~~~~~~~~lyviGG~~~~-~~~~~v~~~d~~~~~--w~~~~~~~~~lp~~~~~~~~~~~~~-~iYv~GG 131 (323)
T TIGR03548 59 L---PYEAAYGASVSVENGIYYIGGSNSS-ERFSSVYRITLDESK--EELICETIGNLPFTFENGSACYKDG-TLYVGGG 131 (323)
T ss_pred C---CccccceEEEEECCEEEEEcCCCCC-CCceeEEEEEEcCCc--eeeeeeEcCCCCcCccCceEEEECC-EEEEEeC
Confidence 6 8899989999999999999998543 357899999998875 62 2233448999999999999998 8999999
Q ss_pred CCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCccceEEeecCCCCeEEEEEC
Q 002047 247 NDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIA 326 (975)
Q Consensus 247 ~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~d~~~~~~~~~~~W~w~~~ 326 (975)
......++++|+||+.++ +|+.+++++.. ++.+++++..+++||||||.+... ..+++.|++.++ +|..+
T Consensus 132 ~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~---~r~~~~~~~~~~~iYv~GG~~~~~--~~~~~~yd~~~~---~W~~~ 201 (323)
T TIGR03548 132 NRNGKPSNKSYLFNLETQ--EWFELPDFPGE---PRVQPVCVKLQNELYVFGGGSNIA--YTDGYKYSPKKN---QWQKV 201 (323)
T ss_pred cCCCccCceEEEEcCCCC--CeeECCCCCCC---CCCcceEEEECCEEEEEcCCCCcc--ccceEEEecCCC---eeEEC
Confidence 876667899999999999 99999876432 255556677799999999986543 467899988877 56666
Q ss_pred CCC----CCCCcceeeE-EEeCCEEEEEcCcCCCCC----------------------------ccccCCcEEEEECCCC
Q 002047 327 PGV----SPSPRYQHAA-VFVNARLHVSGGALGGGR----------------------------MVEDSSSVAVLDTAAG 373 (975)
Q Consensus 327 ~g~----~P~~R~~hs~-v~~~~~L~V~GG~~~~~~----------------------------~~~~~~dv~~yD~~t~ 373 (975)
+.+ .|..+..+++ ++.+++|||+||.+.... .....+++++||+.++
T Consensus 202 ~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~ 281 (323)
T TIGR03548 202 ADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTG 281 (323)
T ss_pred CCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCC
Confidence 543 2444444554 445789999999864210 0011367999999999
Q ss_pred eEEEcccCcCCCCCCCCccccCCCCCccCCCccceeEEEEECCEEEEEcCCC-CCCCccce
Q 002047 374 VWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLR-GGVLLDDL 433 (975)
Q Consensus 374 ~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~LyV~GG~~-~~~~l~Dv 433 (975)
+|+.+..++ ..+|..++++.++++|||+||.. .+.+..++
T Consensus 282 ~W~~~~~~p--------------------~~~r~~~~~~~~~~~iyv~GG~~~pg~rt~~~ 322 (323)
T TIGR03548 282 KWKSIGNSP--------------------FFARCGAALLLTGNNIFSINGELKPGVRTPDI 322 (323)
T ss_pred eeeEccccc--------------------ccccCchheEEECCEEEEEeccccCCcCCcCc
Confidence 999998662 13799999999999999999954 34555544
No 28
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=4e-32 Score=291.16 Aligned_cols=266 Identities=27% Similarity=0.479 Sum_probs=220.0
Q ss_pred eEeecCCCCCCCCcCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcEEEEECCC
Q 002047 80 AVIEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLT 159 (975)
Q Consensus 80 ~~~~~~~~~P~pR~ght~t~~~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t 159 (975)
.+.+..-.+|.||.+.++++..- .+.|++|||....+... -+++|+|.||..+
T Consensus 55 ~~~e~~~~~PspRsn~sl~~nPe----------keELilfGGEf~ngqkT-----------------~vYndLy~Yn~k~ 107 (521)
T KOG1230|consen 55 HVVETSVPPPSPRSNPSLFANPE----------KEELILFGGEFYNGQKT-----------------HVYNDLYSYNTKK 107 (521)
T ss_pred eeeeccCCCCCCCCCcceeeccC----------cceeEEecceeecceeE-----------------EEeeeeeEEeccc
Confidence 44567778999999999998742 56899999976544321 2889999999999
Q ss_pred CcEEEecCCCCCCCCccceEEEEeC-CEEEEEeccCC--C---CCccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEE
Q 002047 160 NKWSRITPFGEPPTPRAAHVATAVG-TMVVIQGGIGP--A---GLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVM 233 (975)
Q Consensus 160 ~~W~~l~~~g~~P~pR~~hsa~~~~-~~iyv~GG~~~--~---~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~ 233 (975)
+.|+++... +.|.||++|.++++. +.+|+|||.-. . .....|+|+||+.++. |+++...| .|.+|.||.|
T Consensus 108 ~eWkk~~sp-n~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trk--weql~~~g-~PS~RSGHRM 183 (521)
T KOG1230|consen 108 NEWKKVVSP-NAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRK--WEQLEFGG-GPSPRSGHRM 183 (521)
T ss_pred cceeEeccC-CCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccch--heeeccCC-CCCCCcccee
Confidence 999999754 369999999999997 79999999532 1 2347999999999984 99998665 7999999999
Q ss_pred EEeCCcEEEEEcCCCC----CCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCC-------
Q 002047 234 ALVGQRYLMAIGGNDG----KRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDA------- 302 (975)
Q Consensus 234 ~~~~~~~lyV~GG~~g----~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~------- 302 (975)
+++.. +|++|||+.. ..++||||+||+.+- +|+++.+.+..|.||..+...+..++.|||+||+..
T Consensus 184 vawK~-~lilFGGFhd~nr~y~YyNDvy~FdLdty--kW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~ 260 (521)
T KOG1230|consen 184 VAWKR-QLILFGGFHDSNRDYIYYNDVYAFDLDTY--KWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDV 260 (521)
T ss_pred EEeee-eEEEEcceecCCCceEEeeeeEEEeccce--eeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhh
Confidence 99998 8999999843 346999999999887 999999988889999999999998999999999742
Q ss_pred -CCCCccceEEeecCC--CCeEEEEECC--CCCCCCcceeeEEEeCC-EEEEEcCcCCC-----CCccccCCcEEEEECC
Q 002047 303 -SSVPLASAYGLAKHR--DGRWEWAIAP--GVSPSPRYQHAAVFVNA-RLHVSGGALGG-----GRMVEDSSSVAVLDTA 371 (975)
Q Consensus 303 -~~~~l~d~~~~~~~~--~~~W~w~~~~--g~~P~~R~~hs~v~~~~-~L~V~GG~~~~-----~~~~~~~~dv~~yD~~ 371 (975)
.+...+|+|.+++.. ...|.|..+. ++.|.||.++++++..+ +-+.|||...- ......++++|.||+.
T Consensus 261 dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt 340 (521)
T KOG1230|consen 261 DKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLT 340 (521)
T ss_pred hcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecc
Confidence 456789999998765 4589999886 68899999999998854 89999997541 1112458999999999
Q ss_pred CCeEEEcc
Q 002047 372 AGVWCDTK 379 (975)
Q Consensus 372 t~~W~~v~ 379 (975)
.++|....
T Consensus 341 ~nrW~~~q 348 (521)
T KOG1230|consen 341 RNRWSEGQ 348 (521)
T ss_pred cchhhHhh
Confidence 99998764
No 29
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=7.5e-31 Score=301.27 Aligned_cols=285 Identities=19% Similarity=0.232 Sum_probs=216.4
Q ss_pred eecCCCCCCCCcCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcEEEEECC--C
Q 002047 82 IEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVL--T 159 (975)
Q Consensus 82 ~~~~~~~P~pR~ght~t~~~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~--t 159 (975)
.....++|.||..++.+++ +++|||+||... +.+++||+. +
T Consensus 19 ~~~l~~lP~~~~~~~~~~~------------~~~iyv~gG~~~-------------------------~~~~~~d~~~~~ 61 (376)
T PRK14131 19 AEQLPDLPVPFKNGTGAID------------NNTVYVGLGSAG-------------------------TSWYKLDLNAPS 61 (376)
T ss_pred cccCCCCCcCccCCeEEEE------------CCEEEEEeCCCC-------------------------CeEEEEECCCCC
Confidence 4567789999999988887 789999999621 247899986 4
Q ss_pred CcEEEecCCCCCCCCccceEEEEeCCEEEEEeccCCC-----CCccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEE
Q 002047 160 NKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPA-----GLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMA 234 (975)
Q Consensus 160 ~~W~~l~~~g~~P~pR~~hsa~~~~~~iyv~GG~~~~-----~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~ 234 (975)
+.|..++++ +..+|.+|++++++++|||+||.... ....+++|+||+.+++ |+.++. ..|.+|.+|+++
T Consensus 62 ~~W~~l~~~--p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~--W~~~~~--~~p~~~~~~~~~ 135 (376)
T PRK14131 62 KGWTKIAAF--PGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS--WQKLDT--RSPVGLAGHVAV 135 (376)
T ss_pred CCeEECCcC--CCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE--EEeCCC--CCCCcccceEEE
Confidence 789999876 12589999999999999999998641 1346899999999975 999872 357788889888
Q ss_pred E-eCCcEEEEEcCCCCC----------------------------------CCCCcEEEEECCCCCcEEEEccCCCCCCC
Q 002047 235 L-VGQRYLMAIGGNDGK----------------------------------RPLADVWALDTAAKPYEWRKLEPEGEGPP 279 (975)
Q Consensus 235 ~-~~~~~lyV~GG~~g~----------------------------------~~~ndv~~yDl~s~~~~W~~v~~~~~~P~ 279 (975)
+ .++ +|||+||.+.. ...+++++||+.++ +|+.+.+++ .
T Consensus 136 ~~~~~-~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~--~W~~~~~~p---~ 209 (376)
T PRK14131 136 SLHNG-KAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTN--QWKNAGESP---F 209 (376)
T ss_pred EeeCC-EEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCC--eeeECCcCC---C
Confidence 7 565 99999997532 12578999999999 999987653 3
Q ss_pred CcceeEEEEEeCCeEEEecCCCCCCCCccceEEee--cCCCCeEEEEECCCCCCCCc--------ceeeEEEeCCEEEEE
Q 002047 280 PCMYATASARSDGLLLLCGGRDASSVPLASAYGLA--KHRDGRWEWAIAPGVSPSPR--------YQHAAVFVNARLHVS 349 (975)
Q Consensus 280 ~r~~~~a~~~~~g~lyvfGG~~~~~~~l~d~~~~~--~~~~~~W~w~~~~g~~P~~R--------~~hs~v~~~~~L~V~ 349 (975)
+++.+++++..+++|||+||.........++|.+. +.++ +|..+..+ |.+| .++.+++++++|||+
T Consensus 210 ~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~---~W~~~~~~-p~~~~~~~~~~~~~~~a~~~~~~iyv~ 285 (376)
T PRK14131 210 LGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNL---KWQKLPDL-PPAPGGSSQEGVAGAFAGYSNGVLLVA 285 (376)
T ss_pred CCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCc---ceeecCCC-CCCCcCCcCCccceEeceeECCEEEEe
Confidence 34667777888999999999865554556666553 3333 67777765 3444 234467889999999
Q ss_pred cCcCCCCCc-------------cccCCcEEEEECCCCeEEEcccCcCCCCCCCCccccCCCCCccCCCccceeEEEEECC
Q 002047 350 GGALGGGRM-------------VEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGD 416 (975)
Q Consensus 350 GG~~~~~~~-------------~~~~~dv~~yD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~ 416 (975)
||.+..... ......+++||+++++|+.+..+ |.+|..|+++++++
T Consensus 286 GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l---------------------p~~r~~~~av~~~~ 344 (376)
T PRK14131 286 GGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGEL---------------------PQGLAYGVSVSWNN 344 (376)
T ss_pred eccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcC---------------------CCCccceEEEEeCC
Confidence 998642210 00112477999999999998877 56899999999999
Q ss_pred EEEEEcCCCC-CCCccceEeeeccc
Q 002047 417 LIFIYGGLRG-GVLLDDLLVAEDLA 440 (975)
Q Consensus 417 ~LyV~GG~~~-~~~l~Dv~~ld~~~ 440 (975)
+|||+||... ...++|+++++...
T Consensus 345 ~iyv~GG~~~~~~~~~~v~~~~~~~ 369 (376)
T PRK14131 345 GVLLIGGETAGGKAVSDVTLLSWDG 369 (376)
T ss_pred EEEEEcCCCCCCcEeeeEEEEEEcC
Confidence 9999999764 47899999887543
No 30
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.3e-31 Score=317.39 Aligned_cols=249 Identities=24% Similarity=0.425 Sum_probs=222.8
Q ss_pred cceeeeEeecCCCCCCCCcCceEEEEcccCCCCCCCccCCEEEEEcCCCC-CCCCCCCCCCCCCCCCcccccccccCcEE
Q 002047 75 YSVVNAVIEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATA-LEGNSAASGTPSSAGSAGIRLAGATADVH 153 (975)
Q Consensus 75 ~~~~~~~~~~~~~~P~pR~ght~t~~~~~~~~~~~~~~~~~lyvfGG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~dv~ 153 (975)
|.+....|.....+|.+|..|+++++ +++||++||.+. .. ..+.++
T Consensus 306 yd~~~~~w~~~a~m~~~r~~~~~~~~------------~~~lYv~GG~~~~~~---------------------~l~~ve 352 (571)
T KOG4441|consen 306 YDPKTNEWSSLAPMPSPRCRVGVAVL------------NGKLYVVGGYDSGSD---------------------RLSSVE 352 (571)
T ss_pred ecCCcCcEeecCCCCcccccccEEEE------------CCEEEEEccccCCCc---------------------ccceEE
Confidence 44555567888999999999999999 789999999984 22 789999
Q ss_pred EEECCCCcEEEecCCCCCCCCccceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEE
Q 002047 154 CYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVM 233 (975)
Q Consensus 154 ~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~ 233 (975)
+||+.+++|+.+++| ..+|..|++++++++||++||.. +...++++++||+.++. |+.+. +|+.+|++|++
T Consensus 353 ~YD~~~~~W~~~a~M---~~~R~~~~v~~l~g~iYavGG~d-g~~~l~svE~YDp~~~~--W~~va---~m~~~r~~~gv 423 (571)
T KOG4441|consen 353 RYDPRTNQWTPVAPM---NTKRSDFGVAVLDGKLYAVGGFD-GEKSLNSVECYDPVTNK--WTPVA---PMLTRRSGHGV 423 (571)
T ss_pred EecCCCCceeccCCc---cCccccceeEEECCEEEEEeccc-cccccccEEEecCCCCc--ccccC---CCCcceeeeEE
Confidence 999999999999998 79999999999999999999996 44568899999999985 99997 99999999999
Q ss_pred EEeCCcEEEEEcCCCCCC-CCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCccceEE
Q 002047 234 ALVGQRYLMAIGGNDGKR-PLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYG 312 (975)
Q Consensus 234 ~~~~~~~lyV~GG~~g~~-~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~d~~~ 312 (975)
+++++ +||++||.++.. +++++++||+.++ +|+.++++.. ++.++++++.+++||++||.++ ...+..+..
T Consensus 424 ~~~~g-~iYi~GG~~~~~~~l~sve~YDP~t~--~W~~~~~M~~----~R~~~g~a~~~~~iYvvGG~~~-~~~~~~VE~ 495 (571)
T KOG4441|consen 424 AVLGG-KLYIIGGGDGSSNCLNSVECYDPETN--TWTLIAPMNT----RRSGFGVAVLNGKIYVVGGFDG-TSALSSVER 495 (571)
T ss_pred EEECC-EEEEEcCcCCCccccceEEEEcCCCC--ceeecCCccc----ccccceEEEECCEEEEECCccC-CCccceEEE
Confidence 99998 899999999877 9999999999999 9999999988 4777778888999999999998 446777999
Q ss_pred eecCCCCeEEEEECCCCCCCCcceeeEEEeCCEEEEEcCcCCCCCccccCCcEEEEECCCCeEEEcccC
Q 002047 313 LAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSV 381 (975)
Q Consensus 313 ~~~~~~~~W~w~~~~g~~P~~R~~hs~v~~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 381 (975)
|++.++ +|..++++ +.+|..++++++++++|++||+++... ++.+..||+++++|+....+
T Consensus 496 ydp~~~---~W~~v~~m-~~~rs~~g~~~~~~~ly~vGG~~~~~~----l~~ve~ydp~~d~W~~~~~~ 556 (571)
T KOG4441|consen 496 YDPETN---QWTMVAPM-TSPRSAVGVVVLGGKLYAVGGFDGNNN----LNTVECYDPETDTWTEVTEP 556 (571)
T ss_pred EcCCCC---ceeEcccC-ccccccccEEEECCEEEEEecccCccc----cceeEEcCCCCCceeeCCCc
Confidence 999988 78888665 689999999999999999999887654 88999999999999998874
No 31
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=4.1e-31 Score=310.60 Aligned_cols=297 Identities=31% Similarity=0.517 Sum_probs=248.5
Q ss_pred ecCCCCCCCCcCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccC-cEEEEECCCCc
Q 002047 83 EKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATA-DVHCYDVLTNK 161 (975)
Q Consensus 83 ~~~~~~P~pR~ght~t~~~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dv~~yD~~t~~ 161 (975)
...+..|.+|++|+++.+ ++++|||||...... .++ |+|.||..+..
T Consensus 52 ~~~~~~p~~R~~hs~~~~------------~~~~~vfGG~~~~~~--------------------~~~~dl~~~d~~~~~ 99 (482)
T KOG0379|consen 52 DVLGVGPIPRAGHSAVLI------------GNKLYVFGGYGSGDR--------------------LTDLDLYVLDLESQL 99 (482)
T ss_pred ccCCCCcchhhccceeEE------------CCEEEEECCCCCCCc--------------------cccceeEEeecCCcc
Confidence 356789999999999999 689999999876542 222 69999999999
Q ss_pred EEEecCCCCCCCCccceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEeCCcEE
Q 002047 162 WSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYL 241 (975)
Q Consensus 162 W~~l~~~g~~P~pR~~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~~~~~l 241 (975)
|......+..|.+|++|++++++++||+|||........++++.||+.+.+ |..+.+.+..|.+|.+|+++++++ +|
T Consensus 100 w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~--W~~l~~~~~~P~~r~~Hs~~~~g~-~l 176 (482)
T KOG0379|consen 100 WTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRT--WSLLSPTGDPPPPRAGHSATVVGT-KL 176 (482)
T ss_pred cccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCc--EEEecCcCCCCCCcccceEEEECC-EE
Confidence 999999999999999999999999999999997656668999999999986 999999999999999999999997 89
Q ss_pred EEEcCCCCCC-CCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCccceEEeecCCCCe
Q 002047 242 MAIGGNDGKR-PLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGR 320 (975)
Q Consensus 242 yV~GG~~g~~-~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~d~~~~~~~~~~~ 320 (975)
|||||.+... .+||+|+||+.+. +|.++...+..|.||..|+++++ +++++||||.+.....++|+|.|+..+
T Consensus 177 ~vfGG~~~~~~~~ndl~i~d~~~~--~W~~~~~~g~~P~pR~gH~~~~~-~~~~~v~gG~~~~~~~l~D~~~ldl~~--- 250 (482)
T KOG0379|consen 177 VVFGGIGGTGDSLNDLHIYDLETS--TWSELDTQGEAPSPRYGHAMVVV-GNKLLVFGGGDDGDVYLNDVHILDLST--- 250 (482)
T ss_pred EEECCccCcccceeeeeeeccccc--cceecccCCCCCCCCCCceEEEE-CCeEEEEeccccCCceecceEeeeccc---
Confidence 9999998766 8999999999999 99999999999998888877776 777888888776666899999998886
Q ss_pred EEEEECC--CCCCCCcceeeEEEeCCEEEEEcCcCCCCCccccCCcEEEEECCCCeEEEcccCcCCCCCCCCccccCCCC
Q 002047 321 WEWAIAP--GVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGD 398 (975)
Q Consensus 321 W~w~~~~--g~~P~~R~~hs~v~~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~ 398 (975)
|.|.... +..|.+|+.|+.++.+.+++|+||...... ..+.++|.||.++..|..+....
T Consensus 251 ~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~--~~l~~~~~l~~~~~~w~~~~~~~---------------- 312 (482)
T KOG0379|consen 251 WEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQ--EPLGDLYGLDLETLVWSKVESVG---------------- 312 (482)
T ss_pred ceeeeccccCCCCCCcceeeeEEECCEEEEEcCCccccc--ccccccccccccccceeeeeccc----------------
Confidence 5666554 778999999999999999999999876521 24789999999999999998874
Q ss_pred CccCCCccceeEEEEECCE----EEEEcCCC-CCCCccceEeeecc
Q 002047 399 AAVELTRRCRHAAAAVGDL----IFIYGGLR-GGVLLDDLLVAEDL 439 (975)
Q Consensus 399 ~~~~p~~R~~hsa~~~~~~----LyV~GG~~-~~~~l~Dv~~ld~~ 439 (975)
...+.+|..|+++..... +.++||.. .....++++.+...
T Consensus 313 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (482)
T KOG0379|consen 313 -VVRPSPRLGHAAELIDELGKDGLGILGGNQILGERLADVFSLQIK 357 (482)
T ss_pred -cccccccccccceeeccCCccceeeecCccccccchhhccccccc
Confidence 123568999998888553 44445422 23556666655433
No 32
>PLN02153 epithiospecifier protein
Probab=99.98 E-value=1.7e-30 Score=294.79 Aligned_cols=257 Identities=25% Similarity=0.404 Sum_probs=200.8
Q ss_pred CCCcEEEecCC-CCCCCCccceEEEEeCCEEEEEeccCCC-CCccccEEEEEcCCCCCcEEEEEecCCCCCC-CcccEEE
Q 002047 158 LTNKWSRITPF-GEPPTPRAAHVATAVGTMVVIQGGIGPA-GLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP-RYGHVMA 234 (975)
Q Consensus 158 ~t~~W~~l~~~-g~~P~pR~~hsa~~~~~~iyv~GG~~~~-~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~-R~~h~~~ 234 (975)
....|.++... +..|.||.+|++++++++|||+||.... ....+++|+||+.++. |+.+++.+..|.. +.+|+++
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~p~~~~~~~~~~ 82 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHT--WSIAPANGDVPRISCLGVRMV 82 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCE--EEEcCccCCCCCCccCceEEE
Confidence 45679999774 3468999999999999999999998533 3345899999999975 9998855544543 4589999
Q ss_pred EeCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCC--CCCCcceeEEEEEeCCeEEEecCCCCCC-----CCc
Q 002047 235 LVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGE--GPPPCMYATASARSDGLLLLCGGRDASS-----VPL 307 (975)
Q Consensus 235 ~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~--~P~~r~~~~a~~~~~g~lyvfGG~~~~~-----~~l 307 (975)
++++ +||||||.++...++++++||+.++ +|+.++++.. .|.+|..|+ +++.+++||||||.+... ..+
T Consensus 83 ~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~p~~R~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~ 158 (341)
T PLN02153 83 AVGT-KLYIFGGRDEKREFSDFYSYDTVKN--EWTFLTKLDEEGGPEARTFHS-MASDENHVYVFGGVSKGGLMKTPERF 158 (341)
T ss_pred EECC-EEEEECCCCCCCccCcEEEEECCCC--EEEEeccCCCCCCCCCceeeE-EEEECCEEEEECCccCCCccCCCccc
Confidence 9998 8999999988778899999999999 9999876532 255566554 456689999999986432 235
Q ss_pred cceEEeecCCCCeEEEEECCC--CCCCCcceeeEEEeCCEEEEEcCcCCC----CCccccCCcEEEEECCCCeEEEcccC
Q 002047 308 ASAYGLAKHRDGRWEWAIAPG--VSPSPRYQHAAVFVNARLHVSGGALGG----GRMVEDSSSVAVLDTAAGVWCDTKSV 381 (975)
Q Consensus 308 ~d~~~~~~~~~~~W~w~~~~g--~~P~~R~~hs~v~~~~~L~V~GG~~~~----~~~~~~~~dv~~yD~~t~~W~~v~~~ 381 (975)
++++.|++.++ +|..++. .+|.+|.+|++++++++|||+||.... +......+++++||+.+++|+++...
T Consensus 159 ~~v~~yd~~~~---~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~ 235 (341)
T PLN02153 159 RTIEAYNIADG---KWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETT 235 (341)
T ss_pred ceEEEEECCCC---eEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEecccc
Confidence 78899988876 5555553 346889999999999999999997531 11112367899999999999998765
Q ss_pred cCCCCCCCCccccCCCCCccCCCccceeEEEEECCEEEEEcCCC---------CCCCccceEeeecccc
Q 002047 382 VTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLR---------GGVLLDDLLVAEDLAA 441 (975)
Q Consensus 382 ~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~LyV~GG~~---------~~~~l~Dv~~ld~~~~ 441 (975)
+. .|.+|..|++++++++||||||.. .+.+++|+|.||....
T Consensus 236 g~------------------~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~ 286 (341)
T PLN02153 236 GA------------------KPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL 286 (341)
T ss_pred CC------------------CCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence 22 256899999999999999999963 2356789999997653
No 33
>PHA02713 hypothetical protein; Provisional
Probab=99.97 E-value=1.3e-30 Score=312.01 Aligned_cols=248 Identities=11% Similarity=0.140 Sum_probs=206.8
Q ss_pred cceeeeEeecCCCCCCCCcCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcEEE
Q 002047 75 YSVVNAVIEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHC 154 (975)
Q Consensus 75 ~~~~~~~~~~~~~~P~pR~ght~t~~~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~ 154 (975)
|.+....|......|.+|.+|+++++ +++|||+||...... .++++++
T Consensus 277 yd~~~~~W~~l~~mp~~r~~~~~a~l------------~~~IYviGG~~~~~~--------------------~~~~v~~ 324 (557)
T PHA02713 277 YNINTMEYSVISTIPNHIINYASAIV------------DNEIIIAGGYNFNNP--------------------SLNKVYK 324 (557)
T ss_pred EeCCCCeEEECCCCCccccceEEEEE------------CCEEEEEcCCCCCCC--------------------ccceEEE
Confidence 34444556777889999999999998 789999999753211 5689999
Q ss_pred EECCCCcEEEecCCCCCCCCccceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEE
Q 002047 155 YDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMA 234 (975)
Q Consensus 155 yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~ 234 (975)
||+.+++|..++++ |.+|..|++++++++||++||.... ...+++++||+.+++ |+.++ +||.+|.+|+++
T Consensus 325 Yd~~~n~W~~~~~m---~~~R~~~~~~~~~g~IYviGG~~~~-~~~~sve~Ydp~~~~--W~~~~---~mp~~r~~~~~~ 395 (557)
T PHA02713 325 INIENKIHVELPPM---IKNRCRFSLAVIDDTIYAIGGQNGT-NVERTIECYTMGDDK--WKMLP---DMPIALSSYGMC 395 (557)
T ss_pred EECCCCeEeeCCCC---cchhhceeEEEECCEEEEECCcCCC-CCCceEEEEECCCCe--EEECC---CCCcccccccEE
Confidence 99999999999987 8999999999999999999998533 346889999999985 99988 999999999999
Q ss_pred EeCCcEEEEEcCCCCC------------------CCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEE
Q 002047 235 LVGQRYLMAIGGNDGK------------------RPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLL 296 (975)
Q Consensus 235 ~~~~~~lyV~GG~~g~------------------~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyv 296 (975)
++++ +|||+||.++. ..++.+++||+.++ +|+.++++..+ +..+++++.+++||+
T Consensus 396 ~~~g-~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td--~W~~v~~m~~~----r~~~~~~~~~~~IYv 468 (557)
T PHA02713 396 VLDQ-YIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN--IWETLPNFWTG----TIRPGVVSHKDDIYV 468 (557)
T ss_pred EECC-EEEEEeCCCcccccccccccccccccccccccceEEEECCCCC--eEeecCCCCcc----cccCcEEEECCEEEE
Confidence 9998 89999998642 13688999999999 99999988653 445566777999999
Q ss_pred ecCCCCCCCCccceEEeecCC-CCeEEEEECCCCCCCCcceeeEEEeCCEEEEEcCcCCCCCccccCCcEEEEECCCCeE
Q 002047 297 CGGRDASSVPLASAYGLAKHR-DGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVW 375 (975)
Q Consensus 297 fGG~~~~~~~l~d~~~~~~~~-~~~W~w~~~~g~~P~~R~~hs~v~~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~W 375 (975)
+||.++.....+.++.|++.+ + +|..++.+ |.+|..+++++++++|||+||+++. ..+++||+.|++|
T Consensus 469 ~GG~~~~~~~~~~ve~Ydp~~~~---~W~~~~~m-~~~r~~~~~~~~~~~iyv~Gg~~~~-------~~~e~yd~~~~~W 537 (557)
T PHA02713 469 VCDIKDEKNVKTCIFRYNTNTYN---GWELITTT-ESRLSALHTILHDNTIMMLHCYESY-------MLQDTFNVYTYEW 537 (557)
T ss_pred EeCCCCCCccceeEEEecCCCCC---CeeEcccc-CcccccceeEEECCEEEEEeeecce-------eehhhcCcccccc
Confidence 999875443345678999998 6 56677665 7999999999999999999998762 3589999999999
Q ss_pred EEcccC
Q 002047 376 CDTKSV 381 (975)
Q Consensus 376 ~~v~~~ 381 (975)
+.+.+.
T Consensus 538 ~~~~~~ 543 (557)
T PHA02713 538 NHICHQ 543 (557)
T ss_pred cchhhh
Confidence 988765
No 34
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.97 E-value=8.1e-31 Score=266.80 Aligned_cols=229 Identities=24% Similarity=0.372 Sum_probs=204.5
Q ss_pred CCCCCCCcCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcEEEEECCCCcEEEe
Q 002047 86 EDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRI 165 (975)
Q Consensus 86 ~~~P~pR~ght~t~~~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l 165 (975)
...|.-|+||+.+.+ .+++||+||.+...+ .-|-+|+||++++.|++.
T Consensus 73 p~VPyqRYGHtvV~y------------~d~~yvWGGRND~eg--------------------aCN~Ly~fDp~t~~W~~p 120 (392)
T KOG4693|consen 73 PAVPYQRYGHTVVEY------------QDKAYVWGGRNDDEG--------------------ACNLLYEFDPETNVWKKP 120 (392)
T ss_pred CccchhhcCceEEEE------------cceEEEEcCccCccc--------------------ccceeeeecccccccccc
Confidence 356888999999999 799999999998765 788999999999999999
Q ss_pred cCCCCCCCCccceEEEEeCCEEEEEeccCCC-CCccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEeCCcEEEEE
Q 002047 166 TPFGEPPTPRAAHVATAVGTMVVIQGGIGPA-GLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAI 244 (975)
Q Consensus 166 ~~~g~~P~pR~~hsa~~~~~~iyv~GG~~~~-~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~~~~~lyV~ 244 (975)
...|..|.+|-+|++|++++.+|||||+... ...++|++++|+.+.+ |+.+.+.|..|.=|--|+++++++ .+|||
T Consensus 121 ~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~Tmt--Wr~~~Tkg~PprwRDFH~a~~~~~-~MYiF 197 (392)
T KOG4693|consen 121 EVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMT--WREMHTKGDPPRWRDFHTASVIDG-MMYIF 197 (392)
T ss_pred ceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEecccee--eeehhccCCCchhhhhhhhhhccc-eEEEe
Confidence 9999999999999999999999999998633 4457899999999976 999999999999999999999997 89999
Q ss_pred cCCCC---------CCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCC-CCccceEEee
Q 002047 245 GGNDG---------KRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASS-VPLASAYGLA 314 (975)
Q Consensus 245 GG~~g---------~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~-~~l~d~~~~~ 314 (975)
||... ..+.+.+-.||+.+. .|......+..|..|+.|++.++ +++||+|||+++.. ..++|+|.|+
T Consensus 198 GGR~D~~gpfHs~~e~Yc~~i~~ld~~T~--aW~r~p~~~~~P~GRRSHS~fvY-ng~~Y~FGGYng~ln~HfndLy~Fd 274 (392)
T KOG4693|consen 198 GGRSDESGPFHSIHEQYCDTIMALDLATG--AWTRTPENTMKPGGRRSHSTFVY-NGKMYMFGGYNGTLNVHFNDLYCFD 274 (392)
T ss_pred ccccccCCCccchhhhhcceeEEEecccc--ccccCCCCCcCCCcccccceEEE-cceEEEecccchhhhhhhcceeecc
Confidence 99843 234677889999999 99999988889999999988877 99999999998754 4689999998
Q ss_pred cCCCCeEEEEECCCCCCCCcceeeEEEeCCEEEEEcCcC
Q 002047 315 KHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGAL 353 (975)
Q Consensus 315 ~~~~~~W~w~~~~g~~P~~R~~hs~v~~~~~L~V~GG~~ 353 (975)
+.+. .|..+.+.+.-|.+|..+++++.++++|+|||..
T Consensus 275 P~t~-~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTs 312 (392)
T KOG4693|consen 275 PKTS-MWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTS 312 (392)
T ss_pred cccc-hheeeeccCCCCCcccceeEEEECCEEEEecCCC
Confidence 8765 8888888899999999999999999999999964
No 35
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=99.97 E-value=5.3e-30 Score=273.50 Aligned_cols=218 Identities=47% Similarity=0.757 Sum_probs=173.7
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccccchhhh
Q 002047 701 KIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINAL 780 (975)
Q Consensus 701 ~vvGDiHG~~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~ 780 (975)
+|||||||++.+|.++|+.++..+.+ .+||||||||||+.+.||+.+|+.++.. |.++++||||||.+.++..
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~~~~d------~li~lGD~vdrg~~~~~~l~~l~~~~~~-~~~~~~l~GNHe~~~~~~~ 73 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGFPPND------KLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVILLRGNHEDMLLNFL 73 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCCCCCC------EEEEECCEeCCCCCcHHHHHHHHHhcCC-CCcEEEEccCchhhhhhhh
Confidence 58999999999999999999886554 8999999999999999999999999887 8899999999999998887
Q ss_pred cCChHHHH-----HHhCCcccchhhhhhhccccccceEEEEcc-eEEEecCCccCcccCHhhhhhccCCcccCCCCccee
Q 002047 781 FGFRIECI-----ERMGERDGIWAWHRINRLFNWLPLAALIEK-KIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLM 854 (975)
Q Consensus 781 ~gf~~e~~-----~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~-~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~ 854 (975)
+++..+.. ..........++..+.++|..||+++.++. +++|||||+.+.....+++. .. ...+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vHag~~~~~~~~~~~~------~~-~~~~~~~ 146 (225)
T cd00144 74 YGFYDEDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVLCVHGGLSPGLPLEEQIK------EE-PEDQLPE 146 (225)
T ss_pred cCCcchhhccchhHHHHHhhCHHHHHHHHHHHHhCcHheEeCCCeEEEEeCCCCCccchHHhhh------cC-cccccce
Confidence 77654421 001111234567888899999999999987 99999999998865554443 11 1223678
Q ss_pred ccccCCCCCCCCCCCcccCCCCCceeeeCHHHHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEeccccccCCCCCc
Q 002047 855 DLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNA 934 (975)
Q Consensus 855 dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~ 934 (975)
+++|++|.... .....+.|+. |+++++.|++.++.++|||||+++.+|+.....+++|||+|+..|++..+|.
T Consensus 147 ~~lw~r~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~ii~GHt~~~~~~~~~~~~~~i~IDtg~~~~~~~~~~ 219 (225)
T cd00144 147 DLLWSDPLELP--GGFGSSRRGG-----GPDAVEWFLKKNGLKLIVRGHTPVEEGYEFGHDGNLITIDSGCNYCGGGGNK 219 (225)
T ss_pred eeeecCCCCCC--CCCcCCCCCC-----CHHHHHHHHHHCCCeEEEEcCccccCccEEcCCCCEEEEecCCcccCCCCcc
Confidence 99999997532 1222333332 8999999999999999999999999998767789999999999998777777
Q ss_pred EEEEE
Q 002047 935 GAILV 939 (975)
Q Consensus 935 ga~l~ 939 (975)
.+++.
T Consensus 220 l~~~~ 224 (225)
T cd00144 220 LAALV 224 (225)
T ss_pred EEEEe
Confidence 66654
No 36
>PHA03098 kelch-like protein; Provisional
Probab=99.97 E-value=1.2e-28 Score=296.34 Aligned_cols=248 Identities=16% Similarity=0.255 Sum_probs=207.0
Q ss_pred cEEEEECCCCcEEEecCCCCCCCCccceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCcc
Q 002047 151 DVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYG 230 (975)
Q Consensus 151 dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~ 230 (975)
.+.+|+..+.+|..+... | .+..|++++++++||++||........+++++||+.+++ |..++ ++|.+|.+
T Consensus 265 ~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~---~~~~~R~~ 335 (534)
T PHA03098 265 NYITNYSPLSEINTIIDI---H-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKS--WNKVP---ELIYPRKN 335 (534)
T ss_pred eeeecchhhhhcccccCc---c-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCe--eeECC---CCCccccc
Confidence 456788888899988644 3 345678999999999999987666667899999999985 99887 89999999
Q ss_pred cEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCccce
Q 002047 231 HVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASA 310 (975)
Q Consensus 231 h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~d~ 310 (975)
|+++++++ +||++||.++...++++++||+.++ +|+.+++++. +|.. ++++..+++||++||.......++++
T Consensus 336 ~~~~~~~~-~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~lp~---~r~~-~~~~~~~~~iYv~GG~~~~~~~~~~v 408 (534)
T PHA03098 336 PGVTVFNN-RIYVIGGIYNSISLNTVESWKPGES--KWREEPPLIF---PRYN-PCVVNVNNLIYVIGGISKNDELLKTV 408 (534)
T ss_pred ceEEEECC-EEEEEeCCCCCEecceEEEEcCCCC--ceeeCCCcCc---CCcc-ceEEEECCEEEEECCcCCCCcccceE
Confidence 99999988 8999999987777899999999999 9999887754 3544 45566799999999986655567899
Q ss_pred EEeecCCCCeEEEEECCCCCCCCcceeeEEEeCCEEEEEcCcCCCCCccccCCcEEEEECCCCeEEEcccCcCCCCCCCC
Q 002047 311 YGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRY 390 (975)
Q Consensus 311 ~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v~~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~p~~~~~ 390 (975)
+.|++.++ +|...+++ |.+|.+|+++.++++|||+||.+..... ...+.+++||+++++|+.++.+
T Consensus 409 ~~yd~~t~---~W~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~-~~~~~v~~yd~~~~~W~~~~~~--------- 474 (534)
T PHA03098 409 ECFSLNTN---KWSKGSPL-PISHYGGCAIYHDGKIYVIGGISYIDNI-KVYNIVESYNPVTNKWTELSSL--------- 474 (534)
T ss_pred EEEeCCCC---eeeecCCC-CccccCceEEEECCEEEEECCccCCCCC-cccceEEEecCCCCceeeCCCC---------
Confidence 99988877 67777654 7899999999999999999998654321 2256699999999999999876
Q ss_pred ccccCCCCCccCCCccceeEEEEECCEEEEEcCCCCCCCccceEeeeccc
Q 002047 391 SADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRGGVLLDDLLVAEDLA 440 (975)
Q Consensus 391 ~~~~~~~~~~~~p~~R~~hsa~~~~~~LyV~GG~~~~~~l~Dv~~ld~~~ 440 (975)
+.+|..|++++++++|||+||.++....++++++|...
T Consensus 475 ------------~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 475 ------------NFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred ------------CcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCC
Confidence 45899999999999999999998877789999998665
No 37
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.96 E-value=2.1e-28 Score=287.67 Aligned_cols=246 Identities=31% Similarity=0.502 Sum_probs=215.2
Q ss_pred CCCCCCCCccceEEEEeCCEEEEEeccCCCCCccc-cEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEeCCcEEEEEc
Q 002047 167 PFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAE-DLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIG 245 (975)
Q Consensus 167 ~~g~~P~pR~~hsa~~~~~~iyv~GG~~~~~~~~~-dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~~~~~lyV~G 245 (975)
..+..|.+|+.|+++.+++++|||||.+......+ |+|++|+.+. .|......|..|.+|++|+++.+++ +||+||
T Consensus 53 ~~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~--~w~~~~~~g~~p~~r~g~~~~~~~~-~l~lfG 129 (482)
T KOG0379|consen 53 VLGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQ--LWTKPAATGDEPSPRYGHSLSAVGD-KLYLFG 129 (482)
T ss_pred cCCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCc--ccccccccCCCCCcccceeEEEECC-eEEEEc
Confidence 34557999999999999999999999865544333 6999999986 4999999999999999999999998 899999
Q ss_pred CCCC-CCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCccceEEeecCCCCeEEEE
Q 002047 246 GNDG-KRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWA 324 (975)
Q Consensus 246 G~~g-~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~d~~~~~~~~~~~W~w~ 324 (975)
|.+. ...+++++.||+.+. +|..+.+.+.+|++|.+|+++++ +++||||||.+.....++|+|.|+..+. +|...
T Consensus 130 G~~~~~~~~~~l~~~d~~t~--~W~~l~~~~~~P~~r~~Hs~~~~-g~~l~vfGG~~~~~~~~ndl~i~d~~~~-~W~~~ 205 (482)
T KOG0379|consen 130 GTDKKYRNLNELHSLDLSTR--TWSLLSPTGDPPPPRAGHSATVV-GTKLVVFGGIGGTGDSLNDLHIYDLETS-TWSEL 205 (482)
T ss_pred cccCCCCChhheEeccCCCC--cEEEecCcCCCCCCcccceEEEE-CCEEEEECCccCcccceeeeeeeccccc-cceec
Confidence 9984 667999999999999 99999999998888888888777 6999999999888778999999988866 58888
Q ss_pred ECCCCCCCCcceeeEEEeCCEEEEEcCcCCCCCccccCCcEEEEECCCCeEEEcccCcCCCCCCCCccccCCCCCccCCC
Q 002047 325 IAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELT 404 (975)
Q Consensus 325 ~~~g~~P~~R~~hs~v~~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~ 404 (975)
.+.+..|.||++|+++++++++||+||.+... .+++|+|+||+.+.+|.++...+ ..|.
T Consensus 206 ~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~---~~l~D~~~ldl~~~~W~~~~~~g------------------~~p~ 264 (482)
T KOG0379|consen 206 DTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGD---VYLNDVHILDLSTWEWKLLPTGG------------------DLPS 264 (482)
T ss_pred ccCCCCCCCCCCceEEEECCeEEEEeccccCC---ceecceEeeecccceeeeccccC------------------CCCC
Confidence 88899999999999999999999999988333 35999999999999999776653 3367
Q ss_pred ccceeEEEEECCEEEEEcCCCCC-C-CccceEeeeccc
Q 002047 405 RRCRHAAAAVGDLIFIYGGLRGG-V-LLDDLLVAEDLA 440 (975)
Q Consensus 405 ~R~~hsa~~~~~~LyV~GG~~~~-~-~l~Dv~~ld~~~ 440 (975)
+|.+|+.++.+..++|+||.... . .+.|+|.|+...
T Consensus 265 ~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~ 302 (482)
T KOG0379|consen 265 PRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLET 302 (482)
T ss_pred CcceeeeEEECCEEEEEcCCcccccccccccccccccc
Confidence 99999999999999999997764 3 799999999874
No 38
>PHA03098 kelch-like protein; Provisional
Probab=99.96 E-value=6.1e-28 Score=290.32 Aligned_cols=242 Identities=18% Similarity=0.251 Sum_probs=197.1
Q ss_pred ecCCCCCCCCcCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcEEEEECCCCcE
Q 002047 83 EKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKW 162 (975)
Q Consensus 83 ~~~~~~P~pR~ght~t~~~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W 162 (975)
......|. +..|+++++ +++||++||...... ..+++++||+.+++|
T Consensus 277 ~~~~~~~~-~~~~~~~~~------------~~~lyv~GG~~~~~~--------------------~~~~v~~yd~~~~~W 323 (534)
T PHA03098 277 NTIIDIHY-VYCFGSVVL------------NNVIYFIGGMNKNNL--------------------SVNSVVSYDTKTKSW 323 (534)
T ss_pred ccccCccc-cccceEEEE------------CCEEEEECCCcCCCC--------------------eeccEEEEeCCCCee
Confidence 33333343 445677777 789999999865331 567999999999999
Q ss_pred EEecCCCCCCCCccceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEeCCcEEE
Q 002047 163 SRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLM 242 (975)
Q Consensus 163 ~~l~~~g~~P~pR~~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~~~~~ly 242 (975)
..++.+ |.+|.+|++++++++||++||.. .....+++++||+.+++ |+.++ ++|.+|++|+++.+++ +||
T Consensus 324 ~~~~~~---~~~R~~~~~~~~~~~lyv~GG~~-~~~~~~~v~~yd~~~~~--W~~~~---~lp~~r~~~~~~~~~~-~iY 393 (534)
T PHA03098 324 NKVPEL---IYPRKNPGVTVFNNRIYVIGGIY-NSISLNTVESWKPGESK--WREEP---PLIFPRYNPCVVNVNN-LIY 393 (534)
T ss_pred eECCCC---CcccccceEEEECCEEEEEeCCC-CCEecceEEEEcCCCCc--eeeCC---CcCcCCccceEEEECC-EEE
Confidence 999876 78999999999999999999986 34457899999999875 99887 8999999999999988 899
Q ss_pred EEcCCCC-CCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCC--CCccceEEeecCCCC
Q 002047 243 AIGGNDG-KRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASS--VPLASAYGLAKHRDG 319 (975)
Q Consensus 243 V~GG~~g-~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~--~~l~d~~~~~~~~~~ 319 (975)
|+||... ...++++++||+.++ +|+.+.+++. +|..| +++..+++||++||.+... ..++.++.|++.++
T Consensus 394 v~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~p~---~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~- 466 (534)
T PHA03098 394 VIGGISKNDELLKTVECFSLNTN--KWSKGSPLPI---SHYGG-CAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN- 466 (534)
T ss_pred EECCcCCCCcccceEEEEeCCCC--eeeecCCCCc---cccCc-eEEEECCEEEEECCccCCCCCcccceEEEecCCCC-
Confidence 9999743 445799999999999 9999887643 35544 4566699999999986543 23567999998877
Q ss_pred eEEEEECCCCCCCCcceeeEEEeCCEEEEEcCcCCCCCccccCCcEEEEECCCCeEEEcccC
Q 002047 320 RWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSV 381 (975)
Q Consensus 320 ~W~w~~~~g~~P~~R~~hs~v~~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 381 (975)
+|...+.+ |.+|..++++.++++|||+||.+.... .+++++||+++++|..+..+
T Consensus 467 --~W~~~~~~-~~~r~~~~~~~~~~~iyv~GG~~~~~~----~~~v~~yd~~~~~W~~~~~~ 521 (534)
T PHA03098 467 --KWTELSSL-NFPRINASLCIFNNKIYVVGGDKYEYY----INEIEVYDDKTNTWTLFCKF 521 (534)
T ss_pred --ceeeCCCC-CcccccceEEEECCEEEEEcCCcCCcc----cceeEEEeCCCCEEEecCCC
Confidence 77777755 688999999999999999999876432 67899999999999998775
No 39
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.95 E-value=1e-26 Score=261.88 Aligned_cols=226 Identities=18% Similarity=0.206 Sum_probs=182.3
Q ss_pred eecCCCCCCCCcCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcEEEEECCCCc
Q 002047 82 IEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNK 161 (975)
Q Consensus 82 ~~~~~~~P~pR~ght~t~~~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~ 161 (975)
|.....+|.||..|+++++ +++||++||..... .++++++||+.+++
T Consensus 53 W~~~~~lp~~r~~~~~~~~------------~~~lyviGG~~~~~---------------------~~~~v~~~d~~~~~ 99 (323)
T TIGR03548 53 WVKDGQLPYEAAYGASVSV------------ENGIYYIGGSNSSE---------------------RFSSVYRITLDESK 99 (323)
T ss_pred EEEcccCCccccceEEEEE------------CCEEEEEcCCCCCC---------------------CceeEEEEEEcCCc
Confidence 4566788999998888888 78999999976432 57899999999999
Q ss_pred E----EEecCCCCCCCCccceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCC-CCCcccEEEEe
Q 002047 162 W----SRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGP-GPRYGHVMALV 236 (975)
Q Consensus 162 W----~~l~~~g~~P~pR~~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P-~~R~~h~~~~~ 236 (975)
| +.++++ |.+|..|++++++++|||+||... +...+++++||+.+++ |+.++ ++| .+|..|+++++
T Consensus 100 w~~~~~~~~~l---p~~~~~~~~~~~~~~iYv~GG~~~-~~~~~~v~~yd~~~~~--W~~~~---~~p~~~r~~~~~~~~ 170 (323)
T TIGR03548 100 EELICETIGNL---PFTFENGSACYKDGTLYVGGGNRN-GKPSNKSYLFNLETQE--WFELP---DFPGEPRVQPVCVKL 170 (323)
T ss_pred eeeeeeEcCCC---CcCccCceEEEECCEEEEEeCcCC-CccCceEEEEcCCCCC--eeECC---CCCCCCCCcceEEEE
Confidence 8 455544 899999999999999999999743 3347899999999875 99987 677 47999999889
Q ss_pred CCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCC--CCCCcceeEEEEEeCCeEEEecCCCCCC----------
Q 002047 237 GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGE--GPPPCMYATASARSDGLLLLCGGRDASS---------- 304 (975)
Q Consensus 237 ~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~--~P~~r~~~~a~~~~~g~lyvfGG~~~~~---------- 304 (975)
++ +|||+||.++.. ..++++||+.++ +|+.+.++.. .|..+..++++++.+++|||+||.+...
T Consensus 171 ~~-~iYv~GG~~~~~-~~~~~~yd~~~~--~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 246 (323)
T TIGR03548 171 QN-ELYVFGGGSNIA-YTDGYKYSPKKN--QWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLAT 246 (323)
T ss_pred CC-EEEEEcCCCCcc-ccceEEEecCCC--eeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhh
Confidence 88 899999987643 468999999999 9999988753 2333445666677789999999986431
Q ss_pred ---------------------CCccceEEeecCCCCeEEEEECCCCCCCCcceeeEEEeCCEEEEEcCcCCCC
Q 002047 305 ---------------------VPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGG 356 (975)
Q Consensus 305 ---------------------~~l~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v~~~~~L~V~GG~~~~~ 356 (975)
...++++.|++.++ +|..++.++..+|..++++.++++|||+||....+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~---~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~pg 316 (323)
T TIGR03548 247 MKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTG---KWKSIGNSPFFARCGAALLLTGNNIFSINGELKPG 316 (323)
T ss_pred ccchhhhhhHHHHhCCCccccCcCceEEEEECCCC---eeeEcccccccccCchheEEECCEEEEEeccccCC
Confidence 01356899999888 77777765446899999999999999999986554
No 40
>PHA02790 Kelch-like protein; Provisional
Probab=99.95 E-value=5.7e-26 Score=268.34 Aligned_cols=207 Identities=17% Similarity=0.262 Sum_probs=174.2
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcEEEEECCCCcEEEecCCCCCCCCccceEEEEeCCEEEEEec
Q 002047 113 GPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGG 192 (975)
Q Consensus 113 ~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~~~iyv~GG 192 (975)
++.||++||..... ..+.+++||+.+++|..++++ |.+|..+++++++++||++||
T Consensus 271 ~~~lyviGG~~~~~---------------------~~~~v~~Ydp~~~~W~~~~~m---~~~r~~~~~v~~~~~iYviGG 326 (480)
T PHA02790 271 GEVVYLIGGWMNNE---------------------IHNNAIAVNYISNNWIPIPPM---NSPRLYASGVPANNKLYVVGG 326 (480)
T ss_pred CCEEEEEcCCCCCC---------------------cCCeEEEEECCCCEEEECCCC---CchhhcceEEEECCEEEEECC
Confidence 78999999975422 567899999999999999988 789999999999999999999
Q ss_pred cCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEcc
Q 002047 193 IGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLE 272 (975)
Q Consensus 193 ~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~ 272 (975)
... .+++++||+.+++ |..++ +||.+|.+|+++++++ +|||+||.++. .+.+++||+.++ +|+.++
T Consensus 327 ~~~----~~sve~ydp~~n~--W~~~~---~l~~~r~~~~~~~~~g-~IYviGG~~~~--~~~ve~ydp~~~--~W~~~~ 392 (480)
T PHA02790 327 LPN----PTSVERWFHGDAA--WVNMP---SLLKPRCNPAVASINN-VIYVIGGHSET--DTTTEYLLPNHD--QWQFGP 392 (480)
T ss_pred cCC----CCceEEEECCCCe--EEECC---CCCCCCcccEEEEECC-EEEEecCcCCC--CccEEEEeCCCC--EEEeCC
Confidence 742 2579999998875 99988 9999999999999998 89999998654 378999999999 999998
Q ss_pred CCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCccceEEeecCCCCeEEEEECCCCCCCCcceeeEEEeCCEEEEEcCc
Q 002047 273 PEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGA 352 (975)
Q Consensus 273 ~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v~~~~~L~V~GG~ 352 (975)
+++.+ |.. +++++.+++||++||. ...|++.++ +|...+++ |.+|..+++++++++|||+||+
T Consensus 393 ~m~~~---r~~-~~~~~~~~~IYv~GG~---------~e~ydp~~~---~W~~~~~m-~~~r~~~~~~v~~~~IYviGG~ 455 (480)
T PHA02790 393 STYYP---HYK-SCALVFGRRLFLVGRN---------AEFYCESSN---TWTLIDDP-IYPRDNPELIIVDNKLLLIGGF 455 (480)
T ss_pred CCCCc---ccc-ceEEEECCEEEEECCc---------eEEecCCCC---cEeEcCCC-CCCccccEEEEECCEEEEECCc
Confidence 87653 444 4556779999999983 356777766 66777765 6899999999999999999998
Q ss_pred CCCCCccccCCcEEEEECCCCeEEEc
Q 002047 353 LGGGRMVEDSSSVAVLDTAAGVWCDT 378 (975)
Q Consensus 353 ~~~~~~~~~~~dv~~yD~~t~~W~~v 378 (975)
++.. ..+.+++||+++++|+..
T Consensus 456 ~~~~----~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 456 YRGS----YIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred CCCc----ccceEEEEECCCCeEEec
Confidence 7533 257799999999999764
No 41
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.94 E-value=2.6e-25 Score=255.47 Aligned_cols=251 Identities=22% Similarity=0.298 Sum_probs=184.2
Q ss_pred ecCCCCC-CCCcCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcEEEEECCCCc
Q 002047 83 EKKEDGP-GPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNK 161 (975)
Q Consensus 83 ~~~~~~P-~pR~ght~t~~~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~ 161 (975)
......| .||.+|+++++ +++||||||........ ....++++|+||+.+++
T Consensus 65 ~~l~~~p~~~r~~~~~v~~------------~~~IYV~GG~~~~~~~~---------------~~~~~~~v~~YD~~~n~ 117 (376)
T PRK14131 65 TKIAAFPGGPREQAVAAFI------------DGKLYVFGGIGKTNSEG---------------SPQVFDDVYKYDPKTNS 117 (376)
T ss_pred EECCcCCCCCcccceEEEE------------CCEEEEEcCCCCCCCCC---------------ceeEcccEEEEeCCCCE
Confidence 3445556 58999999988 78999999986411000 00157899999999999
Q ss_pred EEEecCCCCCCCCccceEEEE-eCCEEEEEeccCCCC---------------------------------CccccEEEEE
Q 002047 162 WSRITPFGEPPTPRAAHVATA-VGTMVVIQGGIGPAG---------------------------------LSAEDLHVLD 207 (975)
Q Consensus 162 W~~l~~~g~~P~pR~~hsa~~-~~~~iyv~GG~~~~~---------------------------------~~~~dv~~yD 207 (975)
|+.++.. .|.+|.+|++++ .+++||++||..... ...+++++||
T Consensus 118 W~~~~~~--~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD 195 (376)
T PRK14131 118 WQKLDTR--SPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYD 195 (376)
T ss_pred EEeCCCC--CCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEE
Confidence 9999853 377788888887 799999999975310 0247899999
Q ss_pred cCCCCCcEEEEEecCCCCC-CCcccEEEEeCCcEEEEEcCCCCC-CCCCcEEE--EECCCCCcEEEEccCCCCCCC---C
Q 002047 208 LTQQRPRWHRVVVQGPGPG-PRYGHVMALVGQRYLMAIGGNDGK-RPLADVWA--LDTAAKPYEWRKLEPEGEGPP---P 280 (975)
Q Consensus 208 ~~t~~~~W~~v~~~g~~P~-~R~~h~~~~~~~~~lyV~GG~~g~-~~~ndv~~--yDl~s~~~~W~~v~~~~~~P~---~ 280 (975)
+.+++ |+.+. ++|. +|.+|+++.+++ +|||+||.... ....++|. ||+.++ +|+.+.+++.++. +
T Consensus 196 ~~t~~--W~~~~---~~p~~~~~~~a~v~~~~-~iYv~GG~~~~~~~~~~~~~~~~~~~~~--~W~~~~~~p~~~~~~~~ 267 (376)
T PRK14131 196 PSTNQ--WKNAG---ESPFLGTAGSAVVIKGN-KLWLINGEIKPGLRTDAVKQGKFTGNNL--KWQKLPDLPPAPGGSSQ 267 (376)
T ss_pred CCCCe--eeECC---cCCCCCCCcceEEEECC-EEEEEeeeECCCcCChhheEEEecCCCc--ceeecCCCCCCCcCCcC
Confidence 99985 99876 7885 788999988887 89999997532 23455554 566777 9999998765321 1
Q ss_pred -cceeEEEEEeCCeEEEecCCCCCCC----------------CccceEEeecCCCCeEEEEECCCCCCCCcceeeEEEeC
Q 002047 281 -CMYATASARSDGLLLLCGGRDASSV----------------PLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVN 343 (975)
Q Consensus 281 -r~~~~a~~~~~g~lyvfGG~~~~~~----------------~l~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v~~~ 343 (975)
++.++.+++.+++|||+||.+.... ....+..|++.++ +|.....+ |.+|..++++.++
T Consensus 268 ~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~---~W~~~~~l-p~~r~~~~av~~~ 343 (376)
T PRK14131 268 EGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNG---KWQKVGEL-PQGLAYGVSVSWN 343 (376)
T ss_pred CccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCC---cccccCcC-CCCccceEEEEeC
Confidence 1233445677999999999863210 0123456777766 56666554 7899999999999
Q ss_pred CEEEEEcCcCCCCCccccCCcEEEEECCCCeEEE
Q 002047 344 ARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCD 377 (975)
Q Consensus 344 ~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~W~~ 377 (975)
++|||+||...... ..++|++|+++.+.|+.
T Consensus 344 ~~iyv~GG~~~~~~---~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 344 NGVLLIGGETAGGK---AVSDVTLLSWDGKKLTV 374 (376)
T ss_pred CEEEEEcCCCCCCc---EeeeEEEEEEcCCEEEE
Confidence 99999999865432 37899999999988865
No 42
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.94 E-value=9.1e-25 Score=248.49 Aligned_cols=222 Identities=18% Similarity=0.255 Sum_probs=169.2
Q ss_pred CCCCccceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCC-CCCcccEEEEeCCcEEEEEcCCCC
Q 002047 171 PPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGP-GPRYGHVMALVGQRYLMAIGGNDG 249 (975)
Q Consensus 171 ~P~pR~~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P-~~R~~h~~~~~~~~~lyV~GG~~g 249 (975)
+|.+|..+++++++++|||+||.. .+++++||+...+.+|..++ +|| .+|..|+++++++ +|||+||.+.
T Consensus 4 lp~~~~~~~~~~~~~~vyv~GG~~-----~~~~~~~d~~~~~~~W~~l~---~~p~~~R~~~~~~~~~~-~iYv~GG~~~ 74 (346)
T TIGR03547 4 LPVGFKNGTGAIIGDKVYVGLGSA-----GTSWYKLDLKKPSKGWQKIA---DFPGGPRNQAVAAAIDG-KLYVFGGIGK 74 (346)
T ss_pred CCccccCceEEEECCEEEEEcccc-----CCeeEEEECCCCCCCceECC---CCCCCCcccceEEEECC-EEEEEeCCCC
Confidence 488999999999999999999973 26799999854334699998 888 5899999999998 8999999854
Q ss_pred C------CCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCC-------------------
Q 002047 250 K------RPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASS------------------- 304 (975)
Q Consensus 250 ~------~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~------------------- 304 (975)
. ..++++|+||+.++ +|+.++.. .|..+..++++++.+++||++||.+...
T Consensus 75 ~~~~~~~~~~~~v~~Yd~~~~--~W~~~~~~--~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~ 150 (346)
T TIGR03547 75 ANSEGSPQVFDDVYRYDPKKN--SWQKLDTR--SPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKD 150 (346)
T ss_pred CCCCCcceecccEEEEECCCC--EEecCCCC--CCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhh
Confidence 2 25789999999999 99999732 2334455555557899999999986421
Q ss_pred --------------CCccceEEeecCCCCeEEEEECCCCCCCCcceeeEEEeCCEEEEEcCcCCCCCccccCCcEEEEE-
Q 002047 305 --------------VPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLD- 369 (975)
Q Consensus 305 --------------~~l~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v~~~~~L~V~GG~~~~~~~~~~~~dv~~yD- 369 (975)
..+++++.|++.++ +|..++.++..+|.+|++++++++|||+||...... ...+++.||
T Consensus 151 ~~~~~~~~~~~~~~~~~~~v~~YDp~t~---~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~---~~~~~~~y~~ 224 (346)
T TIGR03547 151 KLIAAYFSQPPEDYFWNKNVLSYDPSTN---QWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGL---RTAEVKQYLF 224 (346)
T ss_pred hhHHHHhCCChhHcCccceEEEEECCCC---ceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCc---cchheEEEEe
Confidence 01478999999887 777777664357899999999999999999864332 134566665
Q ss_pred -CCCCeEEEcccCcCCCCCCCCccccCCCCCccCCCccceeEEEEECCEEEEEcCCC
Q 002047 370 -TAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLR 425 (975)
Q Consensus 370 -~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~LyV~GG~~ 425 (975)
+++++|+.+..++.+.. ..+..|..|++++++++|||+||.+
T Consensus 225 ~~~~~~W~~~~~m~~~r~--------------~~~~~~~~~~a~~~~~~Iyv~GG~~ 267 (346)
T TIGR03547 225 TGGKLEWNKLPPLPPPKS--------------SSQEGLAGAFAGISNGVLLVAGGAN 267 (346)
T ss_pred cCCCceeeecCCCCCCCC--------------CccccccEEeeeEECCEEEEeecCC
Confidence 57789999988833210 0012456787889999999999975
No 43
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.93 E-value=3.2e-25 Score=238.36 Aligned_cols=245 Identities=23% Similarity=0.379 Sum_probs=198.6
Q ss_pred CCCCCccceEEEEeC--CEEEEEeccCCCCC---ccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEeCCcEEEEE
Q 002047 170 EPPTPRAAHVATAVG--TMVVIQGGIGPAGL---SAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAI 244 (975)
Q Consensus 170 ~~P~pR~~hsa~~~~--~~iyv~GG~~~~~~---~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~~~~~lyV~ 244 (975)
.+|+||.+.++++.. +.|++|||.-..+. ..+|+|+||+.+++ |+.+... ..|.||++|.++++..+.+|+|
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~e--Wkk~~sp-n~P~pRsshq~va~~s~~l~~f 138 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNE--WKKVVSP-NAPPPRSSHQAVAVPSNILWLF 138 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccc--eeEeccC-CCcCCCccceeEEeccCeEEEe
Confidence 368999999999873 48999999654432 47999999999986 9988633 5689999999999986699999
Q ss_pred cCCCC----C--CCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCC---CCCCccceEEeec
Q 002047 245 GGNDG----K--RPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDA---SSVPLASAYGLAK 315 (975)
Q Consensus 245 GG~~g----~--~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~---~~~~l~d~~~~~~ 315 (975)
||.-. . ..+.|+|.||+.++ +|+++...+ .|.+|..|-+++. ..+|+||||... +..++||+|+|+.
T Consensus 139 GGEfaSPnq~qF~HYkD~W~fd~~tr--kweql~~~g-~PS~RSGHRMvaw-K~~lilFGGFhd~nr~y~YyNDvy~FdL 214 (521)
T KOG1230|consen 139 GGEFASPNQEQFHHYKDLWLFDLKTR--KWEQLEFGG-GPSPRSGHRMVAW-KRQLILFGGFHDSNRDYIYYNDVYAFDL 214 (521)
T ss_pred ccccCCcchhhhhhhhheeeeeeccc--hheeeccCC-CCCCCccceeEEe-eeeEEEEcceecCCCceEEeeeeEEEec
Confidence 99732 1 23789999999999 999998777 5788888877776 889999999733 3357899999976
Q ss_pred CCCCeEEEEECCCCCCCCcceeeEEEe-CCEEEEEcCcCCCCC-----ccccCCcEEEEECCC-----CeEEEcccCcCC
Q 002047 316 HRDGRWEWAIAPGVSPSPRYQHAAVFV-NARLHVSGGALGGGR-----MVEDSSSVAVLDTAA-----GVWCDTKSVVTS 384 (975)
Q Consensus 316 ~~~~~W~w~~~~g~~P~~R~~hs~v~~-~~~L~V~GG~~~~~~-----~~~~~~dv~~yD~~t-----~~W~~v~~~~~~ 384 (975)
. ..+|...+.++.-|.+|.+|...+. .+.|||+||++.... .....+|+|.++++. .+|.++...+.+
T Consensus 215 d-tykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~k 293 (521)
T KOG1230|consen 215 D-TYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVK 293 (521)
T ss_pred c-ceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCC
Confidence 6 4467666676777999999999998 999999999853210 112378999999999 799999987554
Q ss_pred CCCCCCccccCCCCCccCCCccceeEEEEECC-EEEEEcCCCC---------CCCccceEeeeccc
Q 002047 385 PRTGRYSADAAGGDAAVELTRRCRHAAAAVGD-LIFIYGGLRG---------GVLLDDLLVAEDLA 440 (975)
Q Consensus 385 p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~-~LyV~GG~~~---------~~~l~Dv~~ld~~~ 440 (975)
|.+|.++++++..+ +-+.|||... +.++||+|.+|+..
T Consensus 294 ------------------PspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~ 341 (521)
T KOG1230|consen 294 ------------------PSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTR 341 (521)
T ss_pred ------------------CCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheeccc
Confidence 67999999999955 9999999543 47899999999765
No 44
>PHA02790 Kelch-like protein; Provisional
Probab=99.93 E-value=1.4e-24 Score=256.44 Aligned_cols=205 Identities=18% Similarity=0.298 Sum_probs=172.9
Q ss_pred EEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEeCCcEEEEEcCCCCCCCCCcEEEE
Q 002047 180 ATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWAL 259 (975)
Q Consensus 180 a~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~y 259 (975)
++.+++.||++||.... ...+++++||+.+++ |..++ +||.+|..++++.+++ +||++||.++. +++++|
T Consensus 267 ~~~~~~~lyviGG~~~~-~~~~~v~~Ydp~~~~--W~~~~---~m~~~r~~~~~v~~~~-~iYviGG~~~~---~sve~y 336 (480)
T PHA02790 267 STHVGEVVYLIGGWMNN-EIHNNAIAVNYISNN--WIPIP---PMNSPRLYASGVPANN-KLYVVGGLPNP---TSVERW 336 (480)
T ss_pred eEEECCEEEEEcCCCCC-CcCCeEEEEECCCCE--EEECC---CCCchhhcceEEEECC-EEEEECCcCCC---CceEEE
Confidence 34589999999997533 356789999999975 99998 8999999999999988 89999998642 679999
Q ss_pred ECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCccceEEeecCCCCeEEEEECCCCCCCCcceeeE
Q 002047 260 DTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAA 339 (975)
Q Consensus 260 Dl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hs~ 339 (975)
|+.++ +|..+++++.+ +.++++++.+|+||++||.+.. .+.+..|++.++ +|...+++ |.+|..|++
T Consensus 337 dp~~n--~W~~~~~l~~~----r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~---~W~~~~~m-~~~r~~~~~ 403 (480)
T PHA02790 337 FHGDA--AWVNMPSLLKP----RCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHD---QWQFGPST-YYPHYKSCA 403 (480)
T ss_pred ECCCC--eEEECCCCCCC----CcccEEEEECCEEEEecCcCCC---CccEEEEeCCCC---EEEeCCCC-CCccccceE
Confidence 99999 99999887652 4455666779999999998643 356788888877 77777765 689999999
Q ss_pred EEeCCEEEEEcCcCCCCCccccCCcEEEEECCCCeEEEcccCcCCCCCCCCccccCCCCCccCCCccceeEEEEECCEEE
Q 002047 340 VFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIF 419 (975)
Q Consensus 340 v~~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~Ly 419 (975)
++++++|||+||. +++||+++++|+.++++ +.+|..+++++++++||
T Consensus 404 ~~~~~~IYv~GG~------------~e~ydp~~~~W~~~~~m---------------------~~~r~~~~~~v~~~~IY 450 (480)
T PHA02790 404 LVFGRRLFLVGRN------------AEFYCESSNTWTLIDDP---------------------IYPRDNPELIIVDNKLL 450 (480)
T ss_pred EEECCEEEEECCc------------eEEecCCCCcEeEcCCC---------------------CCCccccEEEEECCEEE
Confidence 9999999999983 56899999999999888 56899999999999999
Q ss_pred EEcCCCCCCCccceEeeeccc
Q 002047 420 IYGGLRGGVLLDDLLVAEDLA 440 (975)
Q Consensus 420 V~GG~~~~~~l~Dv~~ld~~~ 440 (975)
|+||+++...++.++++|...
T Consensus 451 viGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 451 LIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred EECCcCCCcccceEEEEECCC
Confidence 999988766678899988654
No 45
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=2.3e-25 Score=243.30 Aligned_cols=255 Identities=25% Similarity=0.373 Sum_probs=202.1
Q ss_pred eEeecCCCCCCCCcCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcEEEEECCC
Q 002047 80 AVIEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLT 159 (975)
Q Consensus 80 ~~~~~~~~~P~pR~ght~t~~~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t 159 (975)
..-...|+.|.+-..|.++.. |.+||+|||....+. ++||+|.+....
T Consensus 70 f~PavrGDiPpgcAA~Gfvcd------------GtrilvFGGMvEYGk--------------------YsNdLYELQasR 117 (830)
T KOG4152|consen 70 FAPAVRGDIPPGCAAFGFVCD------------GTRILVFGGMVEYGK--------------------YSNDLYELQASR 117 (830)
T ss_pred ecchhcCCCCCchhhcceEec------------CceEEEEccEeeecc--------------------ccchHHHhhhhh
Confidence 334567999999999998887 799999999876543 889999999999
Q ss_pred CcEEEecC----CCCCCCCccceEEEEeCCEEEEEeccCCC--------CCccccEEEEEcCCC--CCcEEEEEecCCCC
Q 002047 160 NKWSRITP----FGEPPTPRAAHVATAVGTMVVIQGGIGPA--------GLSAEDLHVLDLTQQ--RPRWHRVVVQGPGP 225 (975)
Q Consensus 160 ~~W~~l~~----~g~~P~pR~~hsa~~~~~~iyv~GG~~~~--------~~~~~dv~~yD~~t~--~~~W~~v~~~g~~P 225 (975)
-.|+++.+ .|.+|.||.+|+..+++++-|+|||...+ ..+++|+|++.+.-. ...|......|.+|
T Consensus 118 WeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P 197 (830)
T KOG4152|consen 118 WEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLP 197 (830)
T ss_pred hhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCC
Confidence 99999854 46789999999999999999999997432 235899999999843 23599999999999
Q ss_pred CCCcccEEEEeC-----CcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCC
Q 002047 226 GPRYGHVMALVG-----QRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGR 300 (975)
Q Consensus 226 ~~R~~h~~~~~~-----~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~ 300 (975)
.+|..|+++++- ..++||+||..|. .+.|+|.+|+.+. .|.+..-.+..|-||..|++..+ +++||||||+
T Consensus 198 ~pRESHTAViY~eKDs~~skmvvyGGM~G~-RLgDLW~Ldl~Tl--~W~kp~~~G~~PlPRSLHsa~~I-GnKMyvfGGW 273 (830)
T KOG4152|consen 198 PPRESHTAVIYTEKDSKKSKMVVYGGMSGC-RLGDLWTLDLDTL--TWNKPSLSGVAPLPRSLHSATTI-GNKMYVFGGW 273 (830)
T ss_pred CCcccceeEEEEeccCCcceEEEEcccccc-cccceeEEeccee--ecccccccCCCCCCcccccceee-cceeEEecce
Confidence 999999999981 2389999999874 4899999999998 99999999999999999988877 9999999997
Q ss_pred CCC-------------CCCccceEEeecCCCCeEEEEECC----CCCCCCcceeeEEEeCCEEEEEcCcCCCCCc---cc
Q 002047 301 DAS-------------SVPLASAYGLAKHRDGRWEWAIAP----GVSPSPRYQHAAVFVNARLHVSGGALGGGRM---VE 360 (975)
Q Consensus 301 ~~~-------------~~~l~d~~~~~~~~~~~W~w~~~~----g~~P~~R~~hs~v~~~~~L~V~GG~~~~~~~---~~ 360 (975)
-.. ..+.+.+-+++..+. .|+-.... ...|.+|.+|+++.++.+|||..|+++.... .-
T Consensus 274 VPl~~~~~~~~~hekEWkCTssl~clNldt~-~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQV 352 (830)
T KOG4152|consen 274 VPLVMDDVKVATHEKEWKCTSSLACLNLDTM-AWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQV 352 (830)
T ss_pred eeeeccccccccccceeeeccceeeeeecch-heeeeeeccccccccccccccceeEEeccEEEEEeccchhhHhhcccc
Confidence 211 122333444444433 55433332 2368999999999999999999999875321 12
Q ss_pred cCCcEEEEECC
Q 002047 361 DSSSVAVLDTA 371 (975)
Q Consensus 361 ~~~dv~~yD~~ 371 (975)
+..|+|++|++
T Consensus 353 CCkDlWyLdTe 363 (830)
T KOG4152|consen 353 CCKDLWYLDTE 363 (830)
T ss_pred chhhhhhhccc
Confidence 45778888764
No 46
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=99.87 E-value=2.4e-22 Score=216.70 Aligned_cols=131 Identities=23% Similarity=0.366 Sum_probs=98.7
Q ss_pred CCEEEEecCCCCHHHHHHHHHHhCCCCCCCC---ccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccc
Q 002047 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGD---IAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEA 774 (975)
Q Consensus 698 ~~i~vvGDiHG~~~~L~~ll~~~g~~~~~~~---~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~ 774 (975)
+++.||||||||++.|.++|+++++....+. ....++||||||||||++|+|||.+|++|. .+.++++||||||.
T Consensus 1 ~~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~--~~~~~~~l~GNHE~ 78 (245)
T PRK13625 1 MKYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELV--EKKAAYYVPGNHCN 78 (245)
T ss_pred CceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHh--hCCCEEEEeCccHH
Confidence 4689999999999999999999987421100 001179999999999999999999999885 44689999999999
Q ss_pred cchhhhcCC-------hHHHHHHhCCc---ccchhhhhhhccccccceEEEE-cceEEEecCCccCc
Q 002047 775 ADINALFGF-------RIECIERMGER---DGIWAWHRINRLFNWLPLAALI-EKKIICMHGGIGRS 830 (975)
Q Consensus 775 ~~~~~~~gf-------~~e~~~~~g~~---~~~~~~~~~~~~f~~LPlaa~i-~~~il~vHgGi~~~ 830 (975)
++++...+- ..+....|... ....+++.+.++|+.||++..+ .++++|||||+.+.
T Consensus 79 ~~l~~~~~~~~~~~~gg~~tl~~~~~~~~~~~~~~~~~~~~~~~~lPl~~~~~~~~~~~vHAG~~~~ 145 (245)
T PRK13625 79 KLYRFFLGRNVTIAHGLETTVAEYEALPSHKQNMIKEKFITLYEQAPLYHILDEGRLVVAHAGIRQD 145 (245)
T ss_pred HHHHHHhCCCccccchhHhHHHHHhccChhhHHHHHHHHHHHHHhCCceEEEeCCCEEEEECCCChH
Confidence 887755331 12233333221 1234667888999999999876 46899999999876
No 47
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=99.87 E-value=5e-22 Score=208.58 Aligned_cols=185 Identities=21% Similarity=0.363 Sum_probs=130.2
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCCc--cceeEEEeccccCCCCChHHHHHHHHHhhhc---CCCCEEEEecccccc
Q 002047 701 KIFGDLHGQFGDLMRLFDEYGSPSTAGDI--AYIDYLFLGDYVDRGQHSLETITLLLALKVE---YPNNVHLIRGNHEAA 775 (975)
Q Consensus 701 ~vvGDiHG~~~~L~~ll~~~g~~~~~~~~--~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~---~P~~v~llrGNHE~~ 775 (975)
+||||||||+..|.++|+.+++......+ ....+||+|||||||+++.|||.+|++|+.. .+.++++|+||||.+
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELM 80 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence 58999999999999999998864322111 1127999999999999999999999999754 456899999999999
Q ss_pred chhhhcCChH-HHHHHhCCc--ccchhh---hhhhccccccceEEEEcceEEEecCCccCcccCHhhhhhccCCcccCCC
Q 002047 776 DINALFGFRI-ECIERMGER--DGIWAW---HRINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAG 849 (975)
Q Consensus 776 ~~~~~~gf~~-e~~~~~g~~--~~~~~~---~~~~~~f~~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~ 849 (975)
.++..+.+.. +....+... ....++ ..+.+++..||+...++ ++++||||++|
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lP~~~~~~-~~~fvHag~~~-------------------- 139 (208)
T cd07425 81 NLCGDFRYVHPKYFNEFGGLAMRRRELFSPGGELGRWLRSKPVIVKVN-DTLFVHGGLGP-------------------- 139 (208)
T ss_pred HHcchhccCChhHHHHHHhhhhhHHHhcCCccHHHHHHHhCCeEEEEC-CEEEEeCCcHH--------------------
Confidence 8875443321 111111100 001122 23467899999998887 58889999932
Q ss_pred CcceeccccCCCCCCCCCCCcccCCCCCceeeeCHHHHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEecc
Q 002047 850 SIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSA 924 (975)
Q Consensus 850 ~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa 924 (975)
+|+.... .+... ..-+.+.++++|+.++.++||+||+.++.|....++|++|+|.+.
T Consensus 140 -------~w~r~y~-------~~~~~----~~~~~~~~~~~l~~~~~~~iv~GHTh~~~~~~~~~~g~~i~ID~g 196 (208)
T cd07425 140 -------LWYRGYS-------KETSD----KECAAAHLDKVLERLGAKRMVVGHTPQEGGIVTFCGGKVIRIDVG 196 (208)
T ss_pred -------HHhhHhh-------hhhhh----ccchHHHHHHHHHHcCCCeEEEcCeeeecCceEEECCEEEEEeCC
Confidence 2321110 00000 011336788999999999999999999988877899999999873
No 48
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=99.85 E-value=4.4e-21 Score=208.43 Aligned_cols=206 Identities=18% Similarity=0.315 Sum_probs=138.7
Q ss_pred CCEEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccccch
Q 002047 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADI 777 (975)
Q Consensus 698 ~~i~vvGDiHG~~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~ 777 (975)
|+++||||||||+..|.++|+++++.+..+ .++|||||||||++|+|||.+|+++ +.++++|+||||.+.+
T Consensus 1 M~~~vIGDIHG~~~~l~~ll~~~~~~~~~D-----~li~lGDlVdrGp~s~~vl~~l~~l----~~~~~~VlGNHD~~ll 71 (275)
T PRK00166 1 MATYAIGDIQGCYDELQRLLEKIDFDPAKD-----TLWLVGDLVNRGPDSLEVLRFVKSL----GDSAVTVLGNHDLHLL 71 (275)
T ss_pred CcEEEEEccCCCHHHHHHHHHhcCCCCCCC-----EEEEeCCccCCCcCHHHHHHHHHhc----CCCeEEEecChhHHHH
Confidence 468999999999999999999998754332 7999999999999999999999987 3579999999999988
Q ss_pred hhhcCChHH----HHHHhCCcccchhhhhhhccccccceEEEE-cceEEEecCCccCcccCHhhhhh----ccCCcccCC
Q 002047 778 NALFGFRIE----CIERMGERDGIWAWHRINRLFNWLPLAALI-EKKIICMHGGIGRSINHVEQIEN----LQRPITMEA 848 (975)
Q Consensus 778 ~~~~gf~~e----~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i-~~~il~vHgGi~~~~~~~~~i~~----i~rp~~~~~ 848 (975)
...+|+... ....+- .....+.+.++++.||+...+ ++++++|||||+|.+ ++++... ++..+..+.
T Consensus 72 ~~~~g~~~~~~~~~l~~~l---~~~~~~~~~~~L~~lPl~~~~~~~~~l~vHAGi~p~~-~~~~~~~~a~eve~~l~~~~ 147 (275)
T PRK00166 72 AVAAGIKRNKKKDTLDPIL---EAPDRDELLDWLRHQPLLHVDEELGLVMVHAGIPPQW-DLATALALAREVEAVLRSDD 147 (275)
T ss_pred HhhcCCccccchhHHHHHH---ccccHHHHHHHHHCCCcEEEECCCCEEEEccCCCCCC-CHHHHHHHHHHHHHHhcCCc
Confidence 877765321 111110 112335577889999998776 668999999999975 3333221 112222222
Q ss_pred CCcceeccccCCCCCCCCCCCcccCCCCCceeeeCHHHHHH--HHHHcC-----------------------------Ce
Q 002047 849 GSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVME--FCNNND-----------------------------LQ 897 (975)
Q Consensus 849 ~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~--fl~~~~-----------------------------l~ 897 (975)
...++..+.|+.|.. |.++..|.....|--.++.+ ||...| -.
T Consensus 148 ~~~~~~~my~~~p~~------W~~~l~~~~r~r~~~n~~trmR~~~~~g~l~~~~k~~~~~~~~~~~pWf~~~~~~~~~~ 221 (275)
T PRK00166 148 YRDFLANMYGNEPDR------WSPDLTGLERLRYIINAFTRMRFCTPDGRLDFKCKGPPDEAPAGLKPWFEVPGRKTRDY 221 (275)
T ss_pred HHHHHHHhcCCCcCc------cCcccCchHHHHHHHHHHhhhhcccCCCceeecccCCcccCCcCCCCCccCcCccCCCC
Confidence 122566677766753 55555554433344333322 344333 33
Q ss_pred EEEEeccccccceEEecCCeEEEEecc
Q 002047 898 LIVRAHECVMDGFERFAQGHLITLFSA 924 (975)
Q Consensus 898 ~iiR~H~~~~~G~~~~~~~~~iTvfSa 924 (975)
.||-||-....|... ...++.|=+.
T Consensus 222 ~i~fGHwa~l~G~~~--~~~~~~LDtG 246 (275)
T PRK00166 222 TIVFGHWAALEGLTT--PPNIIALDTG 246 (275)
T ss_pred eEEEecCcccCCccC--CCCeEEeecc
Confidence 689999998778765 4556776544
No 49
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=99.84 E-value=1.2e-21 Score=210.63 Aligned_cols=177 Identities=20% Similarity=0.337 Sum_probs=124.0
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccccchhh
Q 002047 700 IKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINA 779 (975)
Q Consensus 700 i~vvGDiHG~~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~ 779 (975)
++||||||||+..|+++|+++++.+..+ +++|||||||||++|+|||.+|++|+ .++++|+||||.+.++.
T Consensus 1 ~yvIGDIHG~~~~L~~LL~~i~~~~~~D-----~Li~lGDlVdRGp~s~evl~~l~~l~----~~v~~VlGNHD~~ll~~ 71 (257)
T cd07422 1 TYAIGDIQGCYDELQRLLEKINFDPAKD-----RLWLVGDLVNRGPDSLETLRFVKSLG----DSAKTVLGNHDLHLLAV 71 (257)
T ss_pred CEEEECCCCCHHHHHHHHHhcCCCCCCC-----EEEEecCcCCCCcCHHHHHHHHHhcC----CCeEEEcCCchHHHHHH
Confidence 5899999999999999999998765332 89999999999999999999999986 58999999999998887
Q ss_pred hcCChHH----HHHHhCCcccchhhhhhhccccccceEEEEcc-eEEEecCCccCcccCHhhhhhccCCcc----cCCCC
Q 002047 780 LFGFRIE----CIERMGERDGIWAWHRINRLFNWLPLAALIEK-KIICMHGGIGRSINHVEQIENLQRPIT----MEAGS 850 (975)
Q Consensus 780 ~~gf~~e----~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~-~il~vHgGi~~~~~~~~~i~~i~rp~~----~~~~~ 850 (975)
.+|+... ....+- .....+.+.+++..+|++..+++ ++++|||||+|.+ ++++...+.+.++ .+...
T Consensus 72 ~~g~~~~~~~~t~~~~l---~~~~~~~~~~wLr~lPl~~~~~~~~~l~vHAGi~p~w-~~~~~~~~a~eve~~l~~~~~~ 147 (257)
T cd07422 72 AAGIKKPKKKDTLDDIL---NAPDRDELLDWLRHQPLLHRDPELGILMVHAGIPPQW-SIEQALKLAREVEAALRGPNYR 147 (257)
T ss_pred hcCccccccHhHHHHHH---hccchHHHHHHHHhCCCEEEECCccEEEEccCCCCCC-CHHHHHHHHHHHHHHhcCCcHH
Confidence 6664311 111110 01123567788999999988865 8999999999975 4444333222211 11112
Q ss_pred cceeccccCCCCCCCCCCCcccCCCCCceeeeCHHHHHH--HHHHcC
Q 002047 851 IVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVME--FCNNND 895 (975)
Q Consensus 851 ~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~--fl~~~~ 895 (975)
.++..+.|+.|.. |.++.+|.....|-.+++.+ ||...|
T Consensus 148 ~~~~~my~~~p~~------W~~~l~g~~r~r~~~n~~trmR~~~~~g 188 (257)
T cd07422 148 EFLKNMYGNEPDR------WSDDLTGIDRLRYIVNAFTRMRFCTPDG 188 (257)
T ss_pred HHHHHhhCCCCcc------cCcccCccHHHHHHHHHhhceeeecCCC
Confidence 2566677777753 77776666655565555554 455444
No 50
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=99.84 E-value=6.4e-21 Score=204.54 Aligned_cols=130 Identities=24% Similarity=0.415 Sum_probs=98.6
Q ss_pred CCEEEEecCCCCHHHHHHHHHHhCCCCCCC----CccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEecccc
Q 002047 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAG----DIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHE 773 (975)
Q Consensus 698 ~~i~vvGDiHG~~~~L~~ll~~~g~~~~~~----~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE 773 (975)
++|.||||||||+.+|+++|+++++...+. .....++||||||||||++|.|||.+|++|+.. .++++||||||
T Consensus 1 ~~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~~--~~~~~v~GNHE 78 (234)
T cd07423 1 GPFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVAA--GAALCVPGNHD 78 (234)
T ss_pred CCeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhhC--CcEEEEECCcH
Confidence 589999999999999999999998764320 000117999999999999999999999998754 47999999999
Q ss_pred ccchhhhcCCh-------HHHHHHhCCcccchhhhhhhccccccceEEEEc-ceEEEecCCccCc
Q 002047 774 AADINALFGFR-------IECIERMGERDGIWAWHRINRLFNWLPLAALIE-KKIICMHGGIGRS 830 (975)
Q Consensus 774 ~~~~~~~~gf~-------~e~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~-~~il~vHgGi~~~ 830 (975)
.+.++...+.. .+....|... ...+.+.+.++|+.||+...++ ++++|||||+++.
T Consensus 79 ~~l~~~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHag~~~~ 142 (234)
T cd07423 79 NKLYRKLQGRNVKITHGLEETVAQLEAE-SEEFKEEVIEFYESLPSHLVLDEGKLVVAHAGIKEE 142 (234)
T ss_pred HHHHHHhcCCCccccCcccchHHHHhhc-cHHHHHHHHHHHHhCCcEEEeCCCcEEEEeCCCChH
Confidence 98877543311 1222333221 2345677889999999998765 5799999998864
No 51
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=99.83 E-value=6.8e-21 Score=204.37 Aligned_cols=194 Identities=21% Similarity=0.311 Sum_probs=127.0
Q ss_pred CCEEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccccch
Q 002047 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADI 777 (975)
Q Consensus 698 ~~i~vvGDiHG~~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~ 777 (975)
+.++||||||||++.|.++|+++++.+..+ +++|||||||||++|+|||.+|.+++ .++++|+||||.+.+
T Consensus 1 m~~YvIGDIHGc~daL~~LL~~i~f~~~~D-----~l~~lGDlVdRGP~slevL~~l~~l~----~~~~~VlGNHD~~lL 71 (279)
T TIGR00668 1 MATYLIGDLHGCYDELQALLERVEFDPGQD-----TLWLTGDLVARGPGSLEVLRYVKSLG----DAVRLVLGNHDLHLL 71 (279)
T ss_pred CcEEEEEcccCCHHHHHHHHHHhCcCCCCC-----EEEEeCCccCCCCCHHHHHHHHHhcC----CCeEEEEChhHHHHH
Confidence 468999999999999999999999765443 79999999999999999999999874 468899999999999
Q ss_pred hhhcCCh-----HHHHHHhCCcccchhhhhhhccccccceEEEEc-ceEEEecCCccCcccCHhhhhhccCCcc----cC
Q 002047 778 NALFGFR-----IECIERMGERDGIWAWHRINRLFNWLPLAALIE-KKIICMHGGIGRSINHVEQIENLQRPIT----ME 847 (975)
Q Consensus 778 ~~~~gf~-----~e~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~-~~il~vHgGi~~~~~~~~~i~~i~rp~~----~~ 847 (975)
+..+|+. +.....+. ....+.+.+++..||+....+ .++++|||||+|.+ ++++...+.+.++ -+
T Consensus 72 ~~~~g~~~~~~~d~l~~~l~----a~~~~ell~wLr~lPl~i~~~~~~~~lVHAGi~P~w-~l~~a~~~a~eve~~L~~~ 146 (279)
T TIGR00668 72 AVFAGISRNKPKDRLDPLLE----APDADELLNWLRRQPLLQHDEEKKLVMAHAGITPQW-DLQTAKECARDVEAVLSSD 146 (279)
T ss_pred HHhcCCCccCchHHHHHHHH----ccCHHHHHHHHHcCCcEEEeCCCCEEEEecCCCCCC-cHHHHHHHHHHHHHHHcCC
Confidence 8887753 12211121 124467788899999997654 47999999999985 4444333222211 11
Q ss_pred CCCcceeccccCCCCCCCCCCCcccCCCCCceeeeCHHHHHH--HHHHcC-CeEEEEec-cccccceE
Q 002047 848 AGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVME--FCNNND-LQLIVRAH-ECVMDGFE 911 (975)
Q Consensus 848 ~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~--fl~~~~-l~~iiR~H-~~~~~G~~ 911 (975)
.-..++..+.=+.|. .|.++..|.....|--+++.+ ||...| +++-..+. +-.+.||.
T Consensus 147 ~~~~fl~~mygn~p~------~W~~~l~g~~r~r~i~n~~TRmR~c~~~g~ld~~~k~~~~~~p~~~~ 208 (279)
T TIGR00668 147 SYPFFLDAMYGDMPN------RWSPELQGLARLRFIINAFTRMRFCFPNGQLDMYSKESPEDAPAPLK 208 (279)
T ss_pred CHHHHHHHhhCCCCc------cCCCCCchHHHHHHHHHHHhhheeeCCCCCCcccccCCcccCCCCCC
Confidence 100122333323343 266666555544555555544 555554 33333321 22355654
No 52
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=99.82 E-value=8e-20 Score=194.00 Aligned_cols=123 Identities=23% Similarity=0.293 Sum_probs=91.9
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCC--ccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccccchh
Q 002047 701 KIFGDLHGQFGDLMRLFDEYGSPSTAGD--IAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADIN 778 (975)
Q Consensus 701 ~vvGDiHG~~~~L~~ll~~~g~~~~~~~--~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~ 778 (975)
+||||||||++.|.++|+++++....+. ...-++||||||||||++|.|||.+|++++.. .++++|+||||.+++.
T Consensus 2 ~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~~--~~~~~l~GNHE~~ll~ 79 (222)
T cd07413 2 DFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVDA--GHALAVMGNHEFNAIA 79 (222)
T ss_pred EEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhcC--CCEEEEEccCcHHHHH
Confidence 6999999999999999999987532100 00117999999999999999999999998643 4899999999998876
Q ss_pred hhcCCh-----------------HHHHHHhCCcccchhhhhhhccccccceEEEEcceEEEecCCcc
Q 002047 779 ALFGFR-----------------IECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIG 828 (975)
Q Consensus 779 ~~~gf~-----------------~e~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHgGi~ 828 (975)
...+.. .+..+.++. ....++.+.++|+.||++...+ +++|||||+.
T Consensus 80 ~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~lP~~~~~~-~~~~VHAg~~ 143 (222)
T cd07413 80 WHTKDPSGGEWLRAHSKKNLRQHQAFLEQFRE--HSEEHKDWLEWFKTLPLFLDLG-GVRVVHACWD 143 (222)
T ss_pred hhhCCcccchhhhcCCCcccccHHHHHHHHhc--cchhHHHHHHHHhcCCcEEEEC-CEEEEECCcC
Confidence 443210 112222221 1234577889999999998764 7999999986
No 53
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=99.79 E-value=1.2e-18 Score=186.73 Aligned_cols=82 Identities=32% Similarity=0.479 Sum_probs=66.4
Q ss_pred CEEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCC-CEEEEeccccccch
Q 002047 699 PIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPN-NVHLIRGNHEAADI 777 (975)
Q Consensus 699 ~i~vvGDiHG~~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~-~v~llrGNHE~~~~ 777 (975)
++++||||||+++.|.++|+.+.............+||||||||||++|.|||.+|++++..+|. ++++||||||.+++
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNHE~~~l 82 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHDFAFA 82 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCChHHHH
Confidence 68999999999999999998765321100001126999999999999999999999999999886 68999999998876
Q ss_pred hhh
Q 002047 778 NAL 780 (975)
Q Consensus 778 ~~~ 780 (975)
..+
T Consensus 83 ~fL 85 (304)
T cd07421 83 AFL 85 (304)
T ss_pred hHh
Confidence 543
No 54
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=99.79 E-value=2.7e-19 Score=189.73 Aligned_cols=120 Identities=26% Similarity=0.336 Sum_probs=90.1
Q ss_pred CCEEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccccch
Q 002047 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADI 777 (975)
Q Consensus 698 ~~i~vvGDiHG~~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~ 777 (975)
++++||||||||+..|+++|+.+++.+..+ +++|||||||||++|.|||.+|.+ .+++.||||||.+.+
T Consensus 17 ~ri~vigDIHG~~~~L~~lL~~i~~~~~~D-----~li~lGDlvDrGp~s~~vl~~l~~------~~~~~v~GNHE~~~l 85 (218)
T PRK11439 17 RHIWLVGDIHGCFEQLMRKLRHCRFDPWRD-----LLISVGDLIDRGPQSLRCLQLLEE------HWVRAVRGNHEQMAL 85 (218)
T ss_pred CeEEEEEcccCCHHHHHHHHHhcCCCcccC-----EEEEcCcccCCCcCHHHHHHHHHc------CCceEeeCchHHHHH
Confidence 489999999999999999999998763332 799999999999999999999976 368899999999988
Q ss_pred hhhcCChHHHHHHhCCc-------ccchhhhhhhccccccceEEEE---cceEEEecCCcc
Q 002047 778 NALFGFRIECIERMGER-------DGIWAWHRINRLFNWLPLAALI---EKKIICMHGGIG 828 (975)
Q Consensus 778 ~~~~gf~~e~~~~~g~~-------~~~~~~~~~~~~f~~LPlaa~i---~~~il~vHgGi~ 828 (975)
+...+-....+...|.. .....+..+.++++.||+...+ ++++++||||++
T Consensus 86 ~~~~~~~~~~w~~~gg~~~~~l~~~~~~~~~~~~~~l~~LP~~~~~~~~~~~~~~vHAg~p 146 (218)
T PRK11439 86 DALASQQMSLWLMNGGDWFIALTDNQQKQAKTLLEKCQRLPFILEVHCRTGKHVIAHADYP 146 (218)
T ss_pred HHHHCCccchhhhCCChhhhhcchhhhHHHHHHHHHHhcCCcEEEeeccCCCEEEEeCCCC
Confidence 76533211112222211 1122345556889999999755 357999999984
No 55
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=99.77 E-value=1.2e-18 Score=183.60 Aligned_cols=147 Identities=26% Similarity=0.331 Sum_probs=104.6
Q ss_pred CCEEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccccch
Q 002047 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADI 777 (975)
Q Consensus 698 ~~i~vvGDiHG~~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~ 777 (975)
++|+|||||||++..|.++++.+++....+ .++|+|||||||+++.|++.+|.. ..+++|+||||.+.+
T Consensus 1 ~ri~~isDiHg~~~~l~~~l~~~~~~~~~d-----~~~~~GD~v~~g~~~~~~~~~l~~------~~~~~v~GNhe~~~~ 69 (207)
T cd07424 1 GRDFVVGDIHGHYSLLQKALDAVGFDPARD-----RLISVGDLIDRGPESLACLELLLE------PWFHAVRGNHEQMAI 69 (207)
T ss_pred CCEEEEECCCCCHHHHHHHHHHcCCCCCCC-----EEEEeCCcccCCCCHHHHHHHHhc------CCEEEeECCChHHHH
Confidence 479999999999999999999987643222 799999999999999999999875 368999999999988
Q ss_pred hhhcC--ChHHHHHHhCCccc-----chhhhhhhccccccceEEEEc---ceEEEecCCccCcccCHhhhhhccCCcccC
Q 002047 778 NALFG--FRIECIERMGERDG-----IWAWHRINRLFNWLPLAALIE---KKIICMHGGIGRSINHVEQIENLQRPITME 847 (975)
Q Consensus 778 ~~~~g--f~~e~~~~~g~~~~-----~~~~~~~~~~f~~LPlaa~i~---~~il~vHgGi~~~~~~~~~i~~i~rp~~~~ 847 (975)
....+ +..+.+.+++.... ..+++.+.++|+.||+...++ .+++|||||+.+... ...+.. .+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~i~~~g~~~~~vHag~~~~~~-~~~~~~--~~~--- 143 (207)
T cd07424 70 DALRAEPLDAVRWLANGGEWFLDLPDEELRRWLALKLEQLPLAIEVETEGGKVGIVHADYPSDDW-SDGVGA--VTL--- 143 (207)
T ss_pred hHhhCCCcchhHHHhcCCeehhhcChHHHHHHHHHHHHhCCeEEEEEeCCCEEEEECCCCCcchh-hhhhhc--ccc---
Confidence 77654 33344444443211 113455778999999998764 479999999965421 111100 011
Q ss_pred CCCcceeccccCCCC
Q 002047 848 AGSIVLMDLLWSDPT 862 (975)
Q Consensus 848 ~~~~~~~dllWsdP~ 862 (975)
......+++|+++.
T Consensus 144 -~~~~~~~~~w~~~~ 157 (207)
T cd07424 144 -RPEDIEELLWSRTR 157 (207)
T ss_pred -Ccccceeeeeccch
Confidence 11256678998765
No 56
>PHA02239 putative protein phosphatase
Probab=99.77 E-value=2.3e-18 Score=183.52 Aligned_cols=125 Identities=25% Similarity=0.365 Sum_probs=92.7
Q ss_pred CCEEEEecCCCCHHHHHHHHHHhCCC--CCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEecccccc
Q 002047 698 APIKIFGDLHGQFGDLMRLFDEYGSP--STAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAA 775 (975)
Q Consensus 698 ~~i~vvGDiHG~~~~L~~ll~~~g~~--~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~ 775 (975)
|++++|||||||+..|.++++.+... +.+ .+||||||||||+++.+|+.+|++++. .+.++++|+||||.+
T Consensus 1 m~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d------~li~lGD~iDrG~~s~~v~~~l~~~~~-~~~~~~~l~GNHE~~ 73 (235)
T PHA02239 1 MAIYVVPDIHGEYQKLLTIMDKINNERKPEE------TIVFLGDYVDRGKRSKDVVNYIFDLMS-NDDNVVTLLGNHDDE 73 (235)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHhhcCCCCC------EEEEecCcCCCCCChHHHHHHHHHHhh-cCCCeEEEECCcHHH
Confidence 46899999999999999999988543 222 799999999999999999999999754 456899999999998
Q ss_pred chhhhcCC--------------hHHHHHHhCCccc---------------------------chhhhhhhccccccceEE
Q 002047 776 DINALFGF--------------RIECIERMGERDG---------------------------IWAWHRINRLFNWLPLAA 814 (975)
Q Consensus 776 ~~~~~~gf--------------~~e~~~~~g~~~~---------------------------~~~~~~~~~~f~~LPlaa 814 (975)
+++...+. ..+....||-... ...+..+..+++.||+..
T Consensus 74 ~l~~~~~~~~~~~~~~~wl~~GG~~Tl~Syg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~lp~~~ 153 (235)
T PHA02239 74 FYNIMENVDRLSIYDIEWLSRYCIETLNSYGVSTVTLKYSSVEENLRNNYDFIKSELKKLKESDDYRKFKILMVNCRKYY 153 (235)
T ss_pred HHHHHhCchhcccchHHHHHcCCHHHHHHcCCCCccchhhHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHhCcceE
Confidence 76543211 1223344542110 012244556888999997
Q ss_pred EEcceEEEecCCccCc
Q 002047 815 LIEKKIICMHGGIGRS 830 (975)
Q Consensus 815 ~i~~~il~vHgGi~~~ 830 (975)
..+ +++|||||+.|.
T Consensus 154 ~~~-~~ifVHAGi~p~ 168 (235)
T PHA02239 154 KED-KYIFSHSGGVSW 168 (235)
T ss_pred EEC-CEEEEeCCCCCC
Confidence 765 799999999875
No 57
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=99.73 E-value=7.8e-18 Score=178.32 Aligned_cols=120 Identities=23% Similarity=0.244 Sum_probs=86.7
Q ss_pred CCEEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccccch
Q 002047 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADI 777 (975)
Q Consensus 698 ~~i~vvGDiHG~~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~ 777 (975)
++++||||||||+..|+++|+.+.+.+..+ .++|||||||||+++.|||.+|.+ .+++.||||||.+.+
T Consensus 15 ~ri~visDiHg~~~~l~~~l~~~~~~~~~d-----~l~~lGD~vdrG~~~~~~l~~l~~------~~~~~v~GNHE~~~~ 83 (218)
T PRK09968 15 RHIWVVGDIHGEYQLLQSRLHQLSFCPETD-----LLISVGDNIDRGPESLNVLRLLNQ------PWFISVKGNHEAMAL 83 (218)
T ss_pred CeEEEEEeccCCHHHHHHHHHhcCCCCCCC-----EEEECCCCcCCCcCHHHHHHHHhh------CCcEEEECchHHHHH
Confidence 489999999999999999999987654332 799999999999999999999864 378999999999888
Q ss_pred hhhcCChHHHHHHhCCcc-------cchhhhhhhccccccceEEEEc---ceEEEecCCcc
Q 002047 778 NALFGFRIECIERMGERD-------GIWAWHRINRLFNWLPLAALIE---KKIICMHGGIG 828 (975)
Q Consensus 778 ~~~~gf~~e~~~~~g~~~-------~~~~~~~~~~~f~~LPlaa~i~---~~il~vHgGi~ 828 (975)
+....-....+...|... .......+..+++.||+...+. +++++||||++
T Consensus 84 ~~~~~~~~~~~~~~gg~~~~~l~~~~~~~~~~~~~~L~~LP~~~~~~~~g~~~~~vHAg~p 144 (218)
T PRK09968 84 DAFETGDGNMWLASGGDWFFDLNDSEQQEATDLLLKFHHLPHIIEITNDNIKYVIAHADYP 144 (218)
T ss_pred HHHhcCChhHHHHccCHHHhcCCHHHHHHHHHHHHHHhcCCeEEEEeeCCCcEEEEeCCCC
Confidence 654211111111111110 0112233455789999997653 47899999984
No 58
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.72 E-value=7.2e-16 Score=165.43 Aligned_cols=283 Identities=18% Similarity=0.216 Sum_probs=213.6
Q ss_pred ecCCCCCCCCcCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcEEEEECCC--C
Q 002047 83 EKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLT--N 160 (975)
Q Consensus 83 ~~~~~~P~pR~ght~t~~~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t--~ 160 (975)
.+.++.|.+.-+-+-..+ ++.+||-=|. .-...|.+|+.. .
T Consensus 28 ~~lPdlPvg~KnG~Ga~i------------g~~~YVGLGs-------------------------~G~afy~ldL~~~~k 70 (381)
T COG3055 28 GQLPDLPVGFKNGAGALI------------GDTVYVGLGS-------------------------AGTAFYVLDLKKPGK 70 (381)
T ss_pred ccCCCCCcccccccccee------------cceEEEEecc-------------------------CCccceehhhhcCCC
Confidence 456677888776666666 7789987663 223667788864 5
Q ss_pred cEEEecCCCCCCCCccceEEEEeCCEEEEEeccCCCC----CccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEe
Q 002047 161 KWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAG----LSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALV 236 (975)
Q Consensus 161 ~W~~l~~~g~~P~pR~~hsa~~~~~~iyv~GG~~~~~----~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~ 236 (975)
.|++++.. +-.+|....+++++++||+|||.+... ...+|+|+||+.+++ |+++.+.. |..-.+|+++.+
T Consensus 71 ~W~~~a~F--pG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~ns--W~kl~t~s--P~gl~G~~~~~~ 144 (381)
T COG3055 71 GWTKIADF--PGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNS--WHKLDTRS--PTGLVGASTFSL 144 (381)
T ss_pred CceEcccC--CCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCCh--hheecccc--ccccccceeEec
Confidence 79999887 467899999999999999999987443 347999999999986 99998554 667889999999
Q ss_pred CCcEEEEEcCCC----------------------------------CCCCCCcEEEEECCCCCcEEEEccCCCCCCCCcc
Q 002047 237 GQRYLMAIGGND----------------------------------GKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCM 282 (975)
Q Consensus 237 ~~~~lyV~GG~~----------------------------------g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~ 282 (975)
++..||++||.+ .......++.||+.++ +|+.+.-.+.. ..
T Consensus 145 ~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n--~W~~~G~~pf~---~~ 219 (381)
T COG3055 145 NGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTN--QWRNLGENPFY---GN 219 (381)
T ss_pred CCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccc--hhhhcCcCccc---Cc
Confidence 988999999973 1122568999999999 99988644333 46
Q ss_pred eeEEEEEeCCeEEEecCCCCCCCCccceEEeecCCCCeEEEEECCCCCCC------CcceeeEEEeCCEEEEEcCcCCCC
Q 002047 283 YATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPS------PRYQHAAVFVNARLHVSGGALGGG 356 (975)
Q Consensus 283 ~~~a~~~~~g~lyvfGG~~~~~~~l~d~~~~~~~~~~~W~w~~~~g~~P~------~R~~hs~v~~~~~L~V~GG~~~~~ 356 (975)
+.++++..++++.++-|.-..+.....++.++...+ .-+|......++. ...++-.-..++.++|.||.+-.+
T Consensus 220 aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~-~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~G 298 (381)
T COG3055 220 AGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGD-NLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPG 298 (381)
T ss_pred cCcceeecCCeEEEEcceecCCccccceeEEEeccC-ceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChh
Confidence 678888888999999998887777777777765533 4467777654322 223333444578899999964321
Q ss_pred ---------------CccccCCcEEEEECCCCeEEEcccCcCCCCCCCCccccCCCCCccCCCccceeEEEEECCEEEEE
Q 002047 357 ---------------RMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIY 421 (975)
Q Consensus 357 ---------------~~~~~~~dv~~yD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~LyV~ 421 (975)
......++||+|| ++.|..+..+ |.++++..++..++.||++
T Consensus 299 a~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeL---------------------p~~l~YG~s~~~nn~vl~I 355 (381)
T COG3055 299 ALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGEL---------------------PQGLAYGVSLSYNNKVLLI 355 (381)
T ss_pred HHHHHHhcccccccchhhhhhceEEEEc--CCceeeeccc---------------------CCCccceEEEecCCcEEEE
Confidence 1123467899998 9999999988 6688899999999999999
Q ss_pred cCC-CCCCCccceEeee
Q 002047 422 GGL-RGGVLLDDLLVAE 437 (975)
Q Consensus 422 GG~-~~~~~l~Dv~~ld 437 (975)
||- +++..+..++.+-
T Consensus 356 GGE~~~Gka~~~v~~l~ 372 (381)
T COG3055 356 GGETSGGKATTRVYSLS 372 (381)
T ss_pred ccccCCCeeeeeEEEEE
Confidence 994 5678888888764
No 59
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.52 E-value=3.3e-15 Score=164.52 Aligned_cols=317 Identities=17% Similarity=0.265 Sum_probs=206.9
Q ss_pred CCCCCCCCcCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcEEEEECCCCcEEE
Q 002047 85 KEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSR 164 (975)
Q Consensus 85 ~~~~P~pR~ght~t~~~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~ 164 (975)
....|.-|.||.++.... .+.||++||.++.. -+.|+|.|....+.|..
T Consensus 254 ~~~~p~~RgGHQMV~~~~----------~~CiYLYGGWdG~~---------------------~l~DFW~Y~v~e~~W~~ 302 (723)
T KOG2437|consen 254 EDNRPGMRGGHQMVIDVQ----------TECVYLYGGWDGTQ---------------------DLADFWAYSVKENQWTC 302 (723)
T ss_pred cccCccccCcceEEEeCC----------CcEEEEecCcccch---------------------hHHHHHhhcCCcceeEE
Confidence 347899999999999742 46899999998765 68899999999999999
Q ss_pred ecCCCCCCCCccceEEEEeCC--EEEEEeccCCCC-----CccccEEEEEcCCCCCcEEEEEec---CCCCCCCcccEEE
Q 002047 165 ITPFGEPPTPRAAHVATAVGT--MVVIQGGIGPAG-----LSAEDLHVLDLTQQRPRWHRVVVQ---GPGPGPRYGHVMA 234 (975)
Q Consensus 165 l~~~g~~P~pR~~hsa~~~~~--~iyv~GG~~~~~-----~~~~dv~~yD~~t~~~~W~~v~~~---g~~P~~R~~h~~~ 234 (975)
+...+..|..|..|-++.... ++|+.|-+-+.. ..-.|+|+||..+++ |..+.-. ..-|..-+.|.|+
T Consensus 303 iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~--W~~ls~dt~~dGGP~~vfDHqM~ 380 (723)
T KOG2437|consen 303 INRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNT--WMLLSEDTAADGGPKLVFDHQMC 380 (723)
T ss_pred eecCCCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCce--eEEecccccccCCcceeecceee
Confidence 988888899999999999876 999999754322 235899999999986 9988642 2358899999999
Q ss_pred EeCCc-EEEEEcCCCC--C-CCCCcEEEEECCCCCcEEEEccCCCC-------CCCCcceeEEE-EEeCCeEEEecCCCC
Q 002047 235 LVGQR-YLMAIGGNDG--K-RPLADVWALDTAAKPYEWRKLEPEGE-------GPPPCMYATAS-ARSDGLLLLCGGRDA 302 (975)
Q Consensus 235 ~~~~~-~lyV~GG~~g--~-~~~ndv~~yDl~s~~~~W~~v~~~~~-------~P~~r~~~~a~-~~~~g~lyvfGG~~~ 302 (975)
+.+++ .||||||..- . -.+..+|.||+... .|..+..... .-..|..|.+- ...+.++|+|||...
T Consensus 381 Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~--~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s 458 (723)
T KOG2437|consen 381 VDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQ--TWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRS 458 (723)
T ss_pred EecCcceEEEecCeeccCCCccccceEEEecCCc--cHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCccc
Confidence 99872 3999999842 2 34788999999998 8977643211 01123444433 344679999999765
Q ss_pred CCCCccceEEeecCCCCeE----EEEECCCCCCCCcceeeEEEe---CCEEEEEcCcCCCCCc--cccCCcEEEEECCCC
Q 002047 303 SSVPLASAYGLAKHRDGRW----EWAIAPGVSPSPRYQHAAVFV---NARLHVSGGALGGGRM--VEDSSSVAVLDTAAG 373 (975)
Q Consensus 303 ~~~~l~d~~~~~~~~~~~W----~w~~~~g~~P~~R~~hs~v~~---~~~L~V~GG~~~~~~~--~~~~~dv~~yD~~t~ 373 (975)
+. .++=.+.|+....+.= .-...+.+.|.+-.. .-+.. ...|++.-|......- ....+.+|+|+..++
T Consensus 459 ~~-El~L~f~y~I~~E~~~~~s~~~k~dsS~~pS~~f~-qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~ 536 (723)
T KOG2437|consen 459 KT-ELNLFFSYDIDSEHVDIISDGTKKDSSMVPSTGFT-QRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRN 536 (723)
T ss_pred ce-EEeehhcceeccccchhhhccCcCccccCCCcchh-hhcccCCCCcchhhhcccchhccCccccccCcEEEEEeccc
Confidence 54 2333333322111000 000011222222111 11222 3467777776432211 123678999999999
Q ss_pred eEEEcccCcCCCCCC--CCccccCCC--CCccCCCccceeEEEEE--CCEEEEEcCCCCC-----CCccceEeeecc
Q 002047 374 VWCDTKSVVTSPRTG--RYSADAAGG--DAAVELTRRCRHAAAAV--GDLIFIYGGLRGG-----VLLDDLLVAEDL 439 (975)
Q Consensus 374 ~W~~v~~~~~~p~~~--~~~~~~~~~--~~~~~p~~R~~hsa~~~--~~~LyV~GG~~~~-----~~l~Dv~~ld~~ 439 (975)
.|..+.......... +. ....+- .--..+.+|++|+.++. ..-+|++||+.+. ..++|.|.++.-
T Consensus 537 ~w~cI~~I~~~~~d~dtvf-svpFp~ks~~~~~~~~rf~h~~~~dL~~~~~yl~Ggn~~~~~~~~m~l~dfW~l~I~ 612 (723)
T KOG2437|consen 537 SWSCIYKIDQAAKDNDTVF-SVPFPTKSLQEEEPCPRFAHQLVYDLLHKVHYLFGGNPGKSCSPKMRLDDFWSLKIC 612 (723)
T ss_pred chhhHhhhHHhhccCCcee-eccCCcccccceeccccchhHHHHHHhhhhhhhhcCCCCCCCCchhhhhhHHHHhhc
Confidence 998876552211000 00 000000 11234778888887655 5568999997653 467888887755
No 60
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.45 E-value=3.9e-12 Score=137.02 Aligned_cols=242 Identities=21% Similarity=0.325 Sum_probs=169.5
Q ss_pred eecCCCCC-CCCcCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcEEEEECCCC
Q 002047 82 IEKKEDGP-GPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTN 160 (975)
Q Consensus 82 ~~~~~~~P-~pR~ght~t~~~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~ 160 (975)
|+.....| .+|-+.+.+++ +++||||||....... .-...+|+|+||+.++
T Consensus 72 W~~~a~FpG~~rnqa~~a~~------------~~kLyvFgG~Gk~~~~----------------~~~~~nd~Y~y~p~~n 123 (381)
T COG3055 72 WTKIADFPGGARNQAVAAVI------------GGKLYVFGGYGKSVSS----------------SPQVFNDAYRYDPSTN 123 (381)
T ss_pred ceEcccCCCcccccchheee------------CCeEEEeeccccCCCC----------------CceEeeeeEEecCCCC
Confidence 34445555 47888888888 7999999998765431 1128899999999999
Q ss_pred cEEEecCCCCCCCCccceEEEEeCC-EEEEEeccCCCC---------------------------------CccccEEEE
Q 002047 161 KWSRITPFGEPPTPRAAHVATAVGT-MVVIQGGIGPAG---------------------------------LSAEDLHVL 206 (975)
Q Consensus 161 ~W~~l~~~g~~P~pR~~hsa~~~~~-~iyv~GG~~~~~---------------------------------~~~~dv~~y 206 (975)
+|.++... .|....+|+++.+++ +||++||.+..- .....+..|
T Consensus 124 sW~kl~t~--sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy 201 (381)
T COG3055 124 SWHKLDTR--SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSY 201 (381)
T ss_pred hhheeccc--cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhccccccccc
Confidence 99999877 477788999999988 999999964110 014678889
Q ss_pred EcCCCCCcEEEEEecCCCC-CCCcccEEEEeCCcEEEEEcCCC-CCCCCCcEEEEECCCCCcEEEEccCCCCCCCC---c
Q 002047 207 DLTQQRPRWHRVVVQGPGP-GPRYGHVMALVGQRYLMAIGGND-GKRPLADVWALDTAAKPYEWRKLEPEGEGPPP---C 281 (975)
Q Consensus 207 D~~t~~~~W~~v~~~g~~P-~~R~~h~~~~~~~~~lyV~GG~~-g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~---r 281 (975)
++.++. |+.+- ..| .++++++. +.+++++.++-|.- ..-....+++++...+..+|..+.+.+.+... -
T Consensus 202 ~p~~n~--W~~~G---~~pf~~~aGsa~-~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eG 275 (381)
T COG3055 202 DPSTNQ--WRNLG---ENPFYGNAGSAV-VIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEG 275 (381)
T ss_pred ccccch--hhhcC---cCcccCccCcce-eecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccc
Confidence 998875 98774 334 57777555 45555788887763 23446778889988777899999766543222 2
Q ss_pred ceeEEEEEeCCeEEEecCCCCCC------------------CCccceEEeecCCCCeEEEEECCCCCCCCcceeeEEEeC
Q 002047 282 MYATASARSDGLLLLCGGRDASS------------------VPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVN 343 (975)
Q Consensus 282 ~~~~a~~~~~g~lyvfGG~~~~~------------------~~l~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v~~~ 343 (975)
...+.....++.+.+.||..-.+ .-.+++|.|+ ++.|+ .+ +..|.++..-.++..+
T Consensus 276 vAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d---~g~Wk--~~-GeLp~~l~YG~s~~~n 349 (381)
T COG3055 276 VAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD---NGSWK--IV-GELPQGLAYGVSLSYN 349 (381)
T ss_pred cceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc---CCcee--ee-cccCCCccceEEEecC
Confidence 23333456678999999952211 1235677775 44554 33 4457888888888999
Q ss_pred CEEEEEcCcCCCCCccccCCcEEEE
Q 002047 344 ARLHVSGGALGGGRMVEDSSSVAVL 368 (975)
Q Consensus 344 ~~L~V~GG~~~~~~~~~~~~dv~~y 368 (975)
+.||++||.+..+.. ...|+.+
T Consensus 350 n~vl~IGGE~~~Gka---~~~v~~l 371 (381)
T COG3055 350 NKVLLIGGETSGGKA---TTRVYSL 371 (381)
T ss_pred CcEEEEccccCCCee---eeeEEEE
Confidence 999999999877643 4445544
No 61
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.30 E-value=1.1e-12 Score=144.94 Aligned_cols=211 Identities=21% Similarity=0.356 Sum_probs=155.9
Q ss_pred CCcEEEEEecC-------CCCCCCcccEEEEeC-CcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCCcce
Q 002047 212 RPRWHRVVVQG-------PGPGPRYGHVMALVG-QRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMY 283 (975)
Q Consensus 212 ~~~W~~v~~~g-------~~P~~R~~h~~~~~~-~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~ 283 (975)
..+|.+++... ..|..|.||.|+... +++||+.||.+|...+.|.|.|+...+ .|..+...+..|+.|.+
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~--~W~~iN~~t~~PG~RsC 315 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKEN--QWTCINRDTEGPGARSC 315 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcc--eeEEeecCCCCCcchhh
Confidence 35799887654 568999999998754 359999999999999999999999999 99999998888999999
Q ss_pred eEEEE-EeCCeEEEecCCCCCC-----CCccceEEeecCCCCeEEEEECCC---CCCCCcceeeEEEeCCE--EEEEcCc
Q 002047 284 ATASA-RSDGLLLLCGGRDASS-----VPLASAYGLAKHRDGRWEWAIAPG---VSPSPRYQHAAVFVNAR--LHVSGGA 352 (975)
Q Consensus 284 ~~a~~-~~~g~lyvfGG~~~~~-----~~l~d~~~~~~~~~~~W~w~~~~g---~~P~~R~~hs~v~~~~~--L~V~GG~ 352 (975)
|-++. ....+||+.|-+-+.+ ..-+|.|.|+..++ .|.-..... --|..-+.|.+++.+.+ +||+||.
T Consensus 316 HRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~-~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr 394 (723)
T KOG2437|consen 316 HRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTN-TWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGR 394 (723)
T ss_pred hhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCc-eeEEecccccccCCcceeecceeeEecCcceEEEecCe
Confidence 98876 3456999999864332 23478999988776 444333221 12677899999999887 9999998
Q ss_pred CCCCCccccCCcEEEEECCCCeEEEcccCcCCCCCCCCccccCCCCCccCCCccceeEEEEE--CCEEEEEcCCCCCCCc
Q 002047 353 LGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAV--GDLIFIYGGLRGGVLL 430 (975)
Q Consensus 353 ~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~--~~~LyV~GG~~~~~~l 430 (975)
.-... ...+..+|+||+....|.....--+- ..+ .......|.+|++-.. ++++|+|||....+.+
T Consensus 395 ~~~~~-e~~f~GLYaf~~~~~~w~~l~e~~~~----------~~~-vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El 462 (723)
T KOG2437|consen 395 ILTCN-EPQFSGLYAFNCQCQTWKLLREDSCN----------AGP-VVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTEL 462 (723)
T ss_pred eccCC-CccccceEEEecCCccHHHHHHHHhh----------cCc-chhHHHHHHHHHHHhcCCCCeEEeccCcccceEE
Confidence 54332 12367899999999999876543110 000 1122346778876665 5689999998776666
Q ss_pred cceEeee
Q 002047 431 DDLLVAE 437 (975)
Q Consensus 431 ~Dv~~ld 437 (975)
+=.+.+|
T Consensus 463 ~L~f~y~ 469 (723)
T KOG2437|consen 463 NLFFSYD 469 (723)
T ss_pred eehhcce
Confidence 5555554
No 62
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=98.95 E-value=3.8e-09 Score=105.45 Aligned_cols=77 Identities=30% Similarity=0.374 Sum_probs=56.5
Q ss_pred CEEEEecCCCCHHHH---HH-HHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHH--HHhhhcCCCCEEEEeccc
Q 002047 699 PIKIFGDLHGQFGDL---MR-LFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLL--LALKVEYPNNVHLIRGNH 772 (975)
Q Consensus 699 ~i~vvGDiHG~~~~L---~~-ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll--~~lk~~~P~~v~llrGNH 772 (975)
+|++|||+|+.+... .+ +.........+ .+|++||++|++..+.+..... +..+...+..+++++|||
T Consensus 2 ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d------~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNH 75 (200)
T PF00149_consen 2 RILVISDLHGGYDDDSDAFRKLDEIAAENKPD------FIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNH 75 (200)
T ss_dssp EEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTS------EEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TT
T ss_pred eEEEEcCCCCCCcchhHHHHHHHHHhccCCCC------EEEeeccccccccccccchhhhccchhhhhcccccccccccc
Confidence 689999999999987 33 33332222222 6899999999999988877665 555566677999999999
Q ss_pred cccchhhhc
Q 002047 773 EAADINALF 781 (975)
Q Consensus 773 E~~~~~~~~ 781 (975)
|.......+
T Consensus 76 D~~~~~~~~ 84 (200)
T PF00149_consen 76 DYYSGNSFY 84 (200)
T ss_dssp SSHHHHHHH
T ss_pred ccceecccc
Confidence 998765544
No 63
>PF13964 Kelch_6: Kelch motif
Probab=98.76 E-value=1.9e-08 Score=80.60 Aligned_cols=50 Identities=42% Similarity=0.823 Sum_probs=44.2
Q ss_pred CCcCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcEEEEECCCCcEEEecCCCC
Q 002047 91 PRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRITPFGE 170 (975)
Q Consensus 91 pR~ght~t~~~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~g~ 170 (975)
||++|+++++ +++||||||...... .++++++||+.+++|+.++++
T Consensus 1 pR~~~s~v~~------------~~~iyv~GG~~~~~~--------------------~~~~v~~yd~~t~~W~~~~~m-- 46 (50)
T PF13964_consen 1 PRYGHSAVVV------------GGKIYVFGGYDNSGK--------------------YSNDVERYDPETNTWEQLPPM-- 46 (50)
T ss_pred CCccCEEEEE------------CCEEEEECCCCCCCC--------------------ccccEEEEcCCCCcEEECCCC--
Confidence 7999999999 789999999876421 789999999999999999987
Q ss_pred CCCCc
Q 002047 171 PPTPR 175 (975)
Q Consensus 171 ~P~pR 175 (975)
|.||
T Consensus 47 -p~pR 50 (50)
T PF13964_consen 47 -PTPR 50 (50)
T ss_pred -CCCC
Confidence 7776
No 64
>PF13964 Kelch_6: Kelch motif
Probab=98.75 E-value=1.7e-08 Score=80.88 Aligned_cols=50 Identities=32% Similarity=0.615 Sum_probs=45.8
Q ss_pred CccceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCC
Q 002047 174 PRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPR 228 (975)
Q Consensus 174 pR~~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R 228 (975)
||.+|++++++++|||+||........+++++||+.+++ |+.++ +||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~---~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNT--WEQLP---PMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCc--EEECC---CCCCCC
Confidence 699999999999999999997767778999999999986 99998 899887
No 65
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.72 E-value=3.5e-07 Score=91.66 Aligned_cols=59 Identities=24% Similarity=0.400 Sum_probs=47.8
Q ss_pred CEEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEecccccc
Q 002047 699 PIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAA 775 (975)
Q Consensus 699 ~i~vvGDiHG~~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~ 775 (975)
+|.+++|+||++..+.++++.+.. .+ .++++||+++++.... ++. ...+++++||||..
T Consensus 1 ~i~~isD~H~~~~~~~~~~~~~~~--~d------~ii~~GD~~~~~~~~~--------~~~--~~~~~~V~GNhD~~ 59 (155)
T cd00841 1 KIGVISDTHGSLELLEKALELFGD--VD------LIIHAGDVLYPGPLNE--------LEL--KAPVIAVRGNCDGE 59 (155)
T ss_pred CEEEEecCCCCHHHHHHHHHHhcC--CC------EEEECCccccccccch--------hhc--CCcEEEEeCCCCCc
Confidence 578999999999999999998754 22 7999999999998654 111 24699999999984
No 66
>PLN02772 guanylate kinase
Probab=98.71 E-value=8.1e-08 Score=108.17 Aligned_cols=93 Identities=17% Similarity=0.311 Sum_probs=78.8
Q ss_pred cCCCCCCCCcCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcEEEEECCCCcEE
Q 002047 84 KKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWS 163 (975)
Q Consensus 84 ~~~~~P~pR~ght~t~~~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~ 163 (975)
+.|-.+.||..|+++.+ ++++|||||.+.... ..+++|+||..+.+|.
T Consensus 17 ~~~~~~~~~~~~tav~i------------gdk~yv~GG~~d~~~--------------------~~~~v~i~D~~t~~W~ 64 (398)
T PLN02772 17 TNGFGVKPKNRETSVTI------------GDKTYVIGGNHEGNT--------------------LSIGVQILDKITNNWV 64 (398)
T ss_pred ccCccCCCCCcceeEEE------------CCEEEEEcccCCCcc--------------------ccceEEEEECCCCcEe
Confidence 34556779999999999 899999999776332 6789999999999999
Q ss_pred EecCCCCCCCCccceEEEEeC-CEEEEEeccCCCCCccccEEEEEcCCC
Q 002047 164 RITPFGEPPTPRAAHVATAVG-TMVVIQGGIGPAGLSAEDLHVLDLTQQ 211 (975)
Q Consensus 164 ~l~~~g~~P~pR~~hsa~~~~-~~iyv~GG~~~~~~~~~dv~~yD~~t~ 211 (975)
.....|.+|.||.+|++|+++ ++|+|+++.++. .+++|.+.+.+.
T Consensus 65 ~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~---~~~~w~l~~~t~ 110 (398)
T PLN02772 65 SPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP---DDSIWFLEVDTP 110 (398)
T ss_pred cccccCCCCCCCCcceEEEECCceEEEEeCCCCC---ccceEEEEcCCH
Confidence 999999999999999999996 599999875433 478999888773
No 67
>PLN02772 guanylate kinase
Probab=98.70 E-value=7e-08 Score=108.66 Aligned_cols=89 Identities=18% Similarity=0.399 Sum_probs=79.0
Q ss_pred CCCccceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEeCCcEEEEEcCCCCCC
Q 002047 172 PTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKR 251 (975)
Q Consensus 172 P~pR~~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~~~~~lyV~GG~~g~~ 251 (975)
..|+.+|+++++++++|||||.++.+...+++|+||..+.+ |....+.|..|.+|.+|++|++++.+|+|+++..+.
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~--W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~- 98 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNN--WVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP- 98 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCc--EecccccCCCCCCCCcceEEEECCceEEEEeCCCCC-
Confidence 57899999999999999999988766578999999999986 999999999999999999999988899999876553
Q ss_pred CCCcEEEEECCCC
Q 002047 252 PLADVWALDTAAK 264 (975)
Q Consensus 252 ~~ndv~~yDl~s~ 264 (975)
-.++|.+.+.+.
T Consensus 99 -~~~~w~l~~~t~ 110 (398)
T PLN02772 99 -DDSIWFLEVDTP 110 (398)
T ss_pred -ccceEEEEcCCH
Confidence 378999988764
No 68
>COG0639 ApaH Diadenosine tetraphosphatase and related serine/threonine protein phosphatases [Signal transduction mechanisms]
Probab=98.68 E-value=2.5e-08 Score=98.35 Aligned_cols=147 Identities=35% Similarity=0.484 Sum_probs=117.1
Q ss_pred chhhhcCChHHHHHHhCCcccchhhhh---hhccccccceEEEEcc-eEEEecCCccCcc-cCHhhhhhccCCc--ccCC
Q 002047 776 DINALFGFRIECIERMGERDGIWAWHR---INRLFNWLPLAALIEK-KIICMHGGIGRSI-NHVEQIENLQRPI--TMEA 848 (975)
Q Consensus 776 ~~~~~~gf~~e~~~~~g~~~~~~~~~~---~~~~f~~LPlaa~i~~-~il~vHgGi~~~~-~~~~~i~~i~rp~--~~~~ 848 (975)
.+...+|+.+++...++.. ..|.. +.++|+.||+.+++++ .++|.|+++++.+ ..+++++.+.|.. ....
T Consensus 2 ~l~~~~~~~~~~~~~~~~~---~~w~~~~g~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 78 (155)
T COG0639 2 LLTALYGFYDEKLRKYGEE---LEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGLSPGLDRLLDIIEVLDRLRACEVPH 78 (155)
T ss_pred hhhhhhchhHHhhhhcCCc---eeeeeccchhhHHHhhhHHHHhcCCceeeecCCCCcchhhhHHHHHHHhhhhcccCCC
Confidence 3556788888888877653 34655 9999999999999988 9999999999976 6777888777765 3333
Q ss_pred CCcceeccccCCCCCCCCCCCcccCCCCCceeeeCHHHHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEecccccc
Q 002047 849 GSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYC 928 (975)
Q Consensus 849 ~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa~~y~ 928 (975)
.+ ...+.+|+++... ....|.+..||.+. .| .+....|+..+..+.+.|+|+.+..++...+.+..+|+|++++|+
T Consensus 79 ~g-~~~~~~~~~~~~~-~~~~w~~~~~g~~~-~~-~~~~~~f~~~~~~~~~~~~~~~~~~d~~~~~~~~~lt~~~~~~~~ 154 (155)
T COG0639 79 AG-HTHDLLWSDPDGG-DRRIWNPGPRGVPR-DG-GDVTAVFGIVHTPKLIERAHVLYDIDTGAVFGGGLLTAFSAPNYC 154 (155)
T ss_pred cc-ccccccCCCCCCC-cccccccCCCCCCc-cc-cchhhHHhhhcccceEEEEeEEEecCceEEeCCCeeeEEeccccc
Confidence 33 5666699998753 24679999999883 44 678888998898888999999999999988776889999999987
Q ss_pred C
Q 002047 929 G 929 (975)
Q Consensus 929 ~ 929 (975)
.
T Consensus 155 ~ 155 (155)
T COG0639 155 Y 155 (155)
T ss_pred C
Confidence 3
No 69
>PRK09453 phosphodiesterase; Provisional
Probab=98.68 E-value=6.4e-08 Score=99.96 Aligned_cols=69 Identities=19% Similarity=0.323 Sum_probs=53.8
Q ss_pred CCEEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCC--------hHHHHHHHHHhhhcCCCCEEEEe
Q 002047 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQH--------SLETITLLLALKVEYPNNVHLIR 769 (975)
Q Consensus 698 ~~i~vvGDiHG~~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~--------s~evl~ll~~lk~~~P~~v~llr 769 (975)
++|.|++|+||++..|.++++.+.....+ .++++||++|+|+. ..+++.+|..+ ...+++++
T Consensus 1 mri~viSD~Hg~~~~~~~~l~~~~~~~~d------~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~----~~~v~~V~ 70 (182)
T PRK09453 1 MKLMFASDTHGSLPATEKALELFAQSGAD------WLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAY----ADKIIAVR 70 (182)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHhcCCC------EEEEcccccccCcCCCCccccCHHHHHHHHHhc----CCceEEEc
Confidence 57999999999999999999887433333 79999999999873 45667666543 24699999
Q ss_pred ccccccc
Q 002047 770 GNHEAAD 776 (975)
Q Consensus 770 GNHE~~~ 776 (975)
||||...
T Consensus 71 GNhD~~~ 77 (182)
T PRK09453 71 GNCDSEV 77 (182)
T ss_pred cCCcchh
Confidence 9999743
No 70
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=98.65 E-value=2.9e-07 Score=91.97 Aligned_cols=152 Identities=23% Similarity=0.307 Sum_probs=90.0
Q ss_pred CCEEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccccch
Q 002047 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADI 777 (975)
Q Consensus 698 ~~i~vvGDiHG~~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~ 777 (975)
|+|.++||+|++...+.++++.+. ..+ .++++||++|+ .+++.++..+ .+++++||||....
T Consensus 1 Mki~~~sD~H~~~~~~~~~~~~~~--~~d------~vi~~GDi~~~----~~~~~~~~~~------~~~~v~GNHD~~~~ 62 (156)
T PF12850_consen 1 MKIAVISDLHGNLDALEAVLEYIN--EPD------FVIILGDIFDP----EEVLELLRDI------PVYVVRGNHDNWAF 62 (156)
T ss_dssp EEEEEEE--TTTHHHHHHHHHHHT--TES------EEEEES-SCSH----HHHHHHHHHH------EEEEE--CCHSTHH
T ss_pred CEEEEEeCCCCChhHHHHHHHHhc--CCC------EEEECCCchhH----HHHHHHHhcC------CEEEEeCCcccccc
Confidence 579999999999999999999982 122 68889999993 7777777554 69999999996442
Q ss_pred hhhcCChHHHHHHhCCcccchhhhhhhccccccceEEEEcceEEEecCCccCcccCHhhhhhccCCcccCCCCcceeccc
Q 002047 778 NALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLL 857 (975)
Q Consensus 778 ~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dll 857 (975)
..... . .. +...+.+ .+...+++++||.....
T Consensus 63 ~~~~~----------~----~~------~~~~~~~-~~~~~~i~~~H~~~~~~--------------------------- 94 (156)
T PF12850_consen 63 PNEND----------E----EY------LLDALRL-TIDGFKILLSHGHPYDV--------------------------- 94 (156)
T ss_dssp HSEEC----------T----CS------SHSEEEE-EETTEEEEEESSTSSSS---------------------------
T ss_pred hhhhh----------c----cc------cccceee-eecCCeEEEECCCCccc---------------------------
Confidence 22110 0 00 1111111 12245899999966430
Q ss_pred cCCCCCCCCCCCcccCCCCCceeeeCHHHHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEeccccccCCCCCcEEE
Q 002047 858 WSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAI 937 (975)
Q Consensus 858 WsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~ga~ 937 (975)
..+.+.+.+.+...+.++++-||.-...-++ ..+..+++.-|..... .+...++
T Consensus 95 -----------------------~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~-~~~~~~~~~Gs~~~~~--~~~~~~~ 148 (156)
T PF12850_consen 95 -----------------------QWDPAELREILSRENVDLVLHGHTHRPQVFK-IGGIHVINPGSIGGPR--HGDQSGY 148 (156)
T ss_dssp -----------------------TTTHHHHHHHHHHTTSSEEEESSSSSEEEEE-ETTEEEEEE-GSSS-S--SSSSEEE
T ss_pred -----------------------ccChhhhhhhhcccCCCEEEcCCcccceEEE-ECCEEEEECCcCCCCC--CCCCCEE
Confidence 0234556677789999999999987644333 3343455544433222 2225666
Q ss_pred EEEc
Q 002047 938 LVLG 941 (975)
Q Consensus 938 l~i~ 941 (975)
++++
T Consensus 149 ~i~~ 152 (156)
T PF12850_consen 149 AILD 152 (156)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6553
No 71
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.60 E-value=1e-07 Score=76.07 Aligned_cols=49 Identities=41% Similarity=0.751 Sum_probs=40.6
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcEEEEECCCCcEEEecCCCCCCCCccceEEEEe
Q 002047 113 GPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAV 183 (975)
Q Consensus 113 ~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~ 183 (975)
|++||||||...... ..++|+|+||+.+++|+++. +.|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~-------------------~~~nd~~~~~~~~~~W~~~~---~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGG-------------------TRLNDVWVFDLDTNTWTRIG---DLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCC-------------------CEecCEEEEECCCCEEEECC---CCCCCccceEEEEC
Confidence 478999999984221 18899999999999999994 45999999999874
No 72
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.60 E-value=1e-06 Score=88.84 Aligned_cols=62 Identities=19% Similarity=0.253 Sum_probs=47.4
Q ss_pred CCEEEEecCCCCHHHHHHHHHHhCCC-CCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccc
Q 002047 698 APIKIFGDLHGQFGDLMRLFDEYGSP-STAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEA 774 (975)
Q Consensus 698 ~~i~vvGDiHG~~~~L~~ll~~~g~~-~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~ 774 (975)
+++.|++|+||++..+..+++.+... ..+ .++++||++ +.+++.+|..+. ..++.++||||.
T Consensus 1 m~i~viSD~H~~~~~~~~~~~~~~~~~~~d------~ii~~GD~~-----~~~~~~~l~~~~----~~~~~V~GN~D~ 63 (158)
T TIGR00040 1 MKILVISDTHGPLRATELPVELFNLESNVD------LVIHAGDLT-----SPFVLKEFEDLA----AKVIAVRGNNDG 63 (158)
T ss_pred CEEEEEecccCCcchhHhHHHHHhhccCCC------EEEEcCCCC-----CHHHHHHHHHhC----CceEEEccCCCc
Confidence 57899999999998877766665443 223 689999999 467777776542 259999999998
No 73
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.49 E-value=1.2e-07 Score=75.52 Aligned_cols=47 Identities=28% Similarity=0.678 Sum_probs=30.6
Q ss_pred CCcCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcEEEEECCCCcEEEecCC
Q 002047 91 PRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRITPF 168 (975)
Q Consensus 91 pR~ght~t~~~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~ 168 (975)
||++|+++.+. +++||||||...... .++|+|+||+.+++|++++++
T Consensus 1 pR~~h~~~~~~-----------~~~i~v~GG~~~~~~--------------------~~~d~~~~d~~~~~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIG-----------DNSIYVFGGRDSSGS--------------------PLNDLWIFDIETNTWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE------------TTEEEEE--EEE-TE--------------------E---EEEEETTTTEEEE--SS
T ss_pred CcceEEEEEEe-----------CCeEEEECCCCCCCc--------------------ccCCEEEEECCCCEEEECCCC
Confidence 79999999983 479999999876532 889999999999999999554
No 74
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.48 E-value=2.6e-07 Score=73.73 Aligned_cols=48 Identities=33% Similarity=0.704 Sum_probs=42.1
Q ss_pred CCEEEEEeccC-CCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEe
Q 002047 184 GTMVVIQGGIG-PAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALV 236 (975)
Q Consensus 184 ~~~iyv~GG~~-~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~ 236 (975)
+++||||||.. .....++|+|+||+.+.+ |+++ +++|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~--W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNT--WTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCE--EEEC---CCCCCCccceEEEEC
Confidence 57999999998 467778999999998874 9988 589999999999864
No 75
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.48 E-value=3.5e-07 Score=72.98 Aligned_cols=47 Identities=34% Similarity=0.620 Sum_probs=39.9
Q ss_pred CcceeeEEEeCCEEEEEcCc-CCCCCccccCCcEEEEECCCCeEEEcccC
Q 002047 333 PRYQHAAVFVNARLHVSGGA-LGGGRMVEDSSSVAVLDTAAGVWCDTKSV 381 (975)
Q Consensus 333 ~R~~hs~v~~~~~L~V~GG~-~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 381 (975)
+|++|++++++++|||+||+ .... ....+++++||+++++|+.+..+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~--~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNG--GSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCC--CcccceeEEEECCCCEEeecCCC
Confidence 68999999999999999999 2111 24589999999999999998876
No 76
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=98.44 E-value=9.3e-07 Score=86.60 Aligned_cols=118 Identities=22% Similarity=0.265 Sum_probs=77.7
Q ss_pred CEEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChH--HHHHHHHHhhhcCCCCEEEEeccccccc
Q 002047 699 PIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSL--ETITLLLALKVEYPNNVHLIRGNHEAAD 776 (975)
Q Consensus 699 ~i~vvGDiHG~~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~--evl~ll~~lk~~~P~~v~llrGNHE~~~ 776 (975)
+|.+++|+||++. .+ .....+ .+|++||+++++.... +++.++..++ .| .+++++||||...
T Consensus 1 ~i~~isD~H~~~~----~~---~~~~~D------~vi~~GD~~~~~~~~~~~~~~~~l~~~~--~~-~~~~v~GNHD~~~ 64 (135)
T cd07379 1 RFVCISDTHSRHR----TI---SIPDGD------VLIHAGDLTERGTLEELQKFLDWLKSLP--HP-HKIVIAGNHDLTL 64 (135)
T ss_pred CEEEEeCCCCCCC----cC---cCCCCC------EEEECCCCCCCCCHHHHHHHHHHHHhCC--CC-eEEEEECCCCCcC
Confidence 4789999999987 11 111222 6888999999986532 3444444432 12 3678999999631
Q ss_pred hhhhcCChHHHHHHhCCcccchhhhhhhccccccceEEEEcceEEEecCCccCcccCHhhhhhccCCcccCCCCcceecc
Q 002047 777 INALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDL 856 (975)
Q Consensus 777 ~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dl 856 (975)
. .-+.+++++||.+.... +.
T Consensus 65 ~-------------------------------------~~~~~ilv~H~~p~~~~-----------------------~~ 84 (135)
T cd07379 65 D-------------------------------------PEDTDILVTHGPPYGHL-----------------------DL 84 (135)
T ss_pred C-------------------------------------CCCCEEEEECCCCCcCc-----------------------cc
Confidence 1 12347899999653210 00
Q ss_pred ccCCCCCCCCCCCcccCCCCCceeeeCHHHHHHHHHHcCCeEEEEeccccccceE
Q 002047 857 LWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFE 911 (975)
Q Consensus 857 lWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~ 911 (975)
++ + . ..+|.+.+.+++++.+.+++|-||.-...|++
T Consensus 85 ~~--~----------------~-~~~g~~~~~~~~~~~~~~~~i~GH~H~~~~~~ 120 (135)
T cd07379 85 VS--S----------------G-QRVGCEELLNRVQRVRPKLHVFGHIHEGYGAE 120 (135)
T ss_pred cc--c----------------C-cccCCHHHHHHHHHHCCcEEEEcCcCCcCcee
Confidence 00 0 0 23577889999999999999999999988887
No 77
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.44 E-value=1.8e-07 Score=74.54 Aligned_cols=46 Identities=35% Similarity=0.850 Sum_probs=30.6
Q ss_pred CCcccEEEEeCCcEEEEEcCCCCC-CCCCcEEEEECCCCCcEEEEccCC
Q 002047 227 PRYGHVMALVGQRYLMAIGGNDGK-RPLADVWALDTAAKPYEWRKLEPE 274 (975)
Q Consensus 227 ~R~~h~~~~~~~~~lyV~GG~~g~-~~~ndv~~yDl~s~~~~W~~v~~~ 274 (975)
||++|+++.+++++||||||.+.. ..++|+|+||+.++ +|+++.++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~--~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETN--TWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTT--EEEE--SS
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCC--EEEECCCC
Confidence 699999999975699999999876 68999999999999 99999543
No 78
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.41 E-value=6.8e-07 Score=71.30 Aligned_cols=46 Identities=37% Similarity=0.862 Sum_probs=41.3
Q ss_pred CCcccEEEEeCCcEEEEEcCC---CCCCCCCcEEEEECCCCCcEEEEccCCC
Q 002047 227 PRYGHVMALVGQRYLMAIGGN---DGKRPLADVWALDTAAKPYEWRKLEPEG 275 (975)
Q Consensus 227 ~R~~h~~~~~~~~~lyV~GG~---~g~~~~ndv~~yDl~s~~~~W~~v~~~~ 275 (975)
+|++|+++++++ +||||||. ......+++++||+.++ +|+.+++++
T Consensus 1 ~r~~hs~~~~~~-kiyv~GG~~~~~~~~~~~~v~~~d~~t~--~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDG-KIYVFGGYGTDNGGSSSNDVWVFDTETN--QWTELSPMG 49 (49)
T ss_pred CccceEEEEECC-EEEEECCcccCCCCcccceeEEEECCCC--EEeecCCCC
Confidence 699999999998 89999999 45667999999999999 999998764
No 79
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=98.36 E-value=2.9e-06 Score=90.27 Aligned_cols=113 Identities=23% Similarity=0.234 Sum_probs=72.1
Q ss_pred CEEEEecCCCCHHHHH-HHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccccch
Q 002047 699 PIKIFGDLHGQFGDLM-RLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADI 777 (975)
Q Consensus 699 ~i~vvGDiHG~~~~L~-~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~ 777 (975)
+|.++|||||++.... +.++..+ .+ .+||+||+++. +.+++..|..+ +..++.++||||....
T Consensus 2 rIa~isDiHg~~~~~~~~~l~~~~---pD------~Vl~~GDi~~~---~~~~~~~l~~l----~~p~~~V~GNHD~~~~ 65 (238)
T cd07397 2 RIAIVGDVHGQWDLEDIKALHLLQ---PD------LVLFVGDFGNE---SVQLVRAISSL----PLPKAVILGNHDAWYD 65 (238)
T ss_pred EEEEEecCCCCchHHHHHHHhccC---CC------EEEECCCCCcC---hHHHHHHHHhC----CCCeEEEcCCCccccc
Confidence 5899999999987642 3444332 12 68999999864 56777766554 2458999999997553
Q ss_pred hhh---cC-----------------------------------------C-hHHHHHHhCCcccchhhhhhhccccccce
Q 002047 778 NAL---FG-----------------------------------------F-RIECIERMGERDGIWAWHRINRLFNWLPL 812 (975)
Q Consensus 778 ~~~---~g-----------------------------------------f-~~e~~~~~g~~~~~~~~~~~~~~f~~LPl 812 (975)
... +. + ..++...|+ ....++.+..+++.++.
T Consensus 66 ~~~~~k~~~l~~~L~~lg~~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fg---i~s~~eA~~~ive~~~~ 142 (238)
T cd07397 66 ATFRKKGDRVQEQLELLGDLHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYG---VISLEESAQRIIAAAKK 142 (238)
T ss_pred ccccchHHHHHHHHHHhCCcEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHHHhC---CCCHHHHHHHHHHHhhh
Confidence 200 00 0 114455554 22455666677777764
Q ss_pred EEEEcceEEEecCCccCc
Q 002047 813 AALIEKKIICMHGGIGRS 830 (975)
Q Consensus 813 aa~i~~~il~vHgGi~~~ 830 (975)
+......||+.|+++...
T Consensus 143 ~~~~~~~VliaH~~~~G~ 160 (238)
T cd07397 143 APPDLPLILLAHNGPSGL 160 (238)
T ss_pred cCCCCCeEEEeCcCCcCC
Confidence 434445799999998654
No 80
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.36 E-value=3.9e-07 Score=71.81 Aligned_cols=45 Identities=38% Similarity=0.753 Sum_probs=41.3
Q ss_pred CCcccEEEEeCCcEEEEEcCCCC-CCCCCcEEEEECCCCCcEEEEccCC
Q 002047 227 PRYGHVMALVGQRYLMAIGGNDG-KRPLADVWALDTAAKPYEWRKLEPE 274 (975)
Q Consensus 227 ~R~~h~~~~~~~~~lyV~GG~~g-~~~~ndv~~yDl~s~~~~W~~v~~~ 274 (975)
||++|+++++++ +|||+||.++ ...++++++||+.++ +|+.++++
T Consensus 1 pR~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGN-KIYVIGGYDGNNQPTNSVEVYDPETN--TWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETT-EEEEEEEBESTSSBEEEEEEEETTTT--EEEEEEEE
T ss_pred CCccCEEEEECC-EEEEEeeecccCceeeeEEEEeCCCC--EEEEcCCC
Confidence 689999999998 8999999988 778999999999999 99999875
No 81
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.35 E-value=6.2e-07 Score=70.69 Aligned_cols=44 Identities=25% Similarity=0.532 Sum_probs=40.2
Q ss_pred CccceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEE
Q 002047 174 PRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVV 219 (975)
Q Consensus 174 pR~~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~ 219 (975)
||++|++++++++|||+||........+++++||+.+++ |+.++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~ 44 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNT--WEELP 44 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTE--EEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCE--EEEcC
Confidence 699999999999999999998777889999999999985 99998
No 82
>PF13854 Kelch_5: Kelch motif
Probab=98.25 E-value=1.9e-06 Score=66.28 Aligned_cols=40 Identities=40% Similarity=0.572 Sum_probs=36.2
Q ss_pred CCCCccceEEEEeCCEEEEEeccCC-CCCccccEEEEEcCC
Q 002047 171 PPTPRAAHVATAVGTMVVIQGGIGP-AGLSAEDLHVLDLTQ 210 (975)
Q Consensus 171 ~P~pR~~hsa~~~~~~iyv~GG~~~-~~~~~~dv~~yD~~t 210 (975)
+|.+|++|++++++++|||+||... .....+|+|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 4889999999999999999999983 677789999999876
No 83
>PF13854 Kelch_5: Kelch motif
Probab=98.23 E-value=2e-06 Score=66.14 Aligned_cols=39 Identities=36% Similarity=0.701 Sum_probs=35.4
Q ss_pred CCCCCcccEEEEeCCcEEEEEcCCCC--CCCCCcEEEEECCC
Q 002047 224 GPGPRYGHVMALVGQRYLMAIGGNDG--KRPLADVWALDTAA 263 (975)
Q Consensus 224 ~P~~R~~h~~~~~~~~~lyV~GG~~g--~~~~ndv~~yDl~s 263 (975)
+|.+|++|+++++++ +|||+||.++ ...++|+|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~-~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGN-NIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECC-EEEEEcCccCCCCCEECcEEEEECCC
Confidence 489999999999998 8999999984 67799999999976
No 84
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.16 E-value=1.7e-05 Score=75.69 Aligned_cols=117 Identities=23% Similarity=0.372 Sum_probs=81.6
Q ss_pred EEEecCCCCHHHHHHHH--HHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccccchh
Q 002047 701 KIFGDLHGQFGDLMRLF--DEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADIN 778 (975)
Q Consensus 701 ~vvGDiHG~~~~L~~ll--~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~ 778 (975)
+++||+|+......... ........+ .+|++||+++.+....+........+......++++.||||
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~~~~~------~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD----- 69 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAAEKPD------FVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD----- 69 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcccCCC------EEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCce-----
Confidence 47999999999888764 221111112 68889999999988877665533444455568999999999
Q ss_pred hhcCChHHHHHHhCCcccchhhhhhhccccccceEEEEcceEEEecCCccCcccCHhhhhhccCCcccCCCCcceecccc
Q 002047 779 ALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLW 858 (975)
Q Consensus 779 ~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dllW 858 (975)
++++|..+.+...... ..
T Consensus 70 -----------------------------------------i~~~H~~~~~~~~~~~------------~~--------- 87 (131)
T cd00838 70 -----------------------------------------ILLTHGPPYDPLDELS------------PD--------- 87 (131)
T ss_pred -----------------------------------------EEEeccCCCCCchhhc------------cc---------
Confidence 8889998865411000 00
Q ss_pred CCCCCCCCCCCcccCCCCCceeeeCHHHHHHHHHHcCCeEEEEeccccccceE
Q 002047 859 SDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFE 911 (975)
Q Consensus 859 sdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~ 911 (975)
.......+...+...+..++|-||.-....+.
T Consensus 88 ---------------------~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~ 119 (131)
T cd00838 88 ---------------------EDPGSEALLELLEKYGVDLVLSGHTHVYERRE 119 (131)
T ss_pred ---------------------chhhHHHHHHHHHHhCCCEEEeCCeecccccc
Confidence 00145677888999999999999998766554
No 85
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.10 E-value=6.1e-05 Score=77.48 Aligned_cols=58 Identities=24% Similarity=0.441 Sum_probs=41.8
Q ss_pred CEEEEecCC-CCHH-----HHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccc
Q 002047 699 PIKIFGDLH-GQFG-----DLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNH 772 (975)
Q Consensus 699 ~i~vvGDiH-G~~~-----~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNH 772 (975)
.|.||+|.| |.-. .+.++|+. ...+ .++.+||+++ .+++.+|..++ ..++.++|||
T Consensus 1 ~i~viSDtHl~~~~~~~~~~~~~~~~~---~~~d------~iih~GDi~~-----~~~~~~l~~~~----~~~~~V~GN~ 62 (178)
T cd07394 1 LVLVIGDLHIPHRASDLPAKFKKLLVP---GKIQ------HVLCTGNLCS-----KETYDYLKTIA----PDVHIVRGDF 62 (178)
T ss_pred CEEEEEecCCCCCchhhHHHHHHHhcc---CCCC------EEEECCCCCC-----HHHHHHHHhhC----CceEEEECCC
Confidence 478999999 6543 35555544 1122 6888999987 77777776652 2599999999
Q ss_pred cc
Q 002047 773 EA 774 (975)
Q Consensus 773 E~ 774 (975)
|.
T Consensus 63 D~ 64 (178)
T cd07394 63 DE 64 (178)
T ss_pred Cc
Confidence 97
No 86
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=98.07 E-value=8.6e-06 Score=86.46 Aligned_cols=71 Identities=11% Similarity=0.178 Sum_probs=56.2
Q ss_pred CCEEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEecccccc
Q 002047 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAA 775 (975)
Q Consensus 698 ~~i~vvGDiHG~~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~ 775 (975)
++|.+++||||++..|.++++.+.....+ .+|++||++++|...-++..++..|... +..+++++||||..
T Consensus 5 ~kIl~iSDiHgn~~~le~l~~~~~~~~~D------~vv~~GDl~~~g~~~~~~~~~l~~l~~l-~~pv~~V~GNhD~~ 75 (224)
T cd07388 5 RYVLATSNPKGDLEALEKLVGLAPETGAD------AIVLIGNLLPKAAKSEDYAAFFRILGEA-HLPTFYVPGPQDAP 75 (224)
T ss_pred eEEEEEEecCCCHHHHHHHHHHHhhcCCC------EEEECCCCCCCCCCHHHHHHHHHHHHhc-CCceEEEcCCCChH
Confidence 46999999999999999999876432233 6899999999997777777777666432 34699999999985
No 87
>smart00612 Kelch Kelch domain.
Probab=97.99 E-value=8.7e-06 Score=63.62 Aligned_cols=47 Identities=30% Similarity=0.599 Sum_probs=40.0
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcEEEEECCCCcEEEecCCCCCCCCccceEEEEeCC
Q 002047 115 RLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGT 185 (975)
Q Consensus 115 ~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~~ 185 (975)
+||++||..... .++++++||+.+++|..++++ |.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~~---------------------~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQ---------------------RLKSVEVYDPETNKWTPLPSM---PTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCc---------------------eeeeEEEECCCCCeEccCCCC---CCccccceEEEeCC
Confidence 489999985422 678999999999999999877 89999999998764
No 88
>smart00612 Kelch Kelch domain.
Probab=97.94 E-value=1.2e-05 Score=62.78 Aligned_cols=47 Identities=32% Similarity=0.471 Sum_probs=39.2
Q ss_pred EEEEEcCcCCCCCccccCCcEEEEECCCCeEEEcccCcCCCCCCCCccccCCCCCccCCCccceeEEEEECC
Q 002047 345 RLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGD 416 (975)
Q Consensus 345 ~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~ 416 (975)
+|||+||..... ..+++++||+.+++|..+..+ +.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~~----~~~~v~~yd~~~~~W~~~~~~---------------------~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQ----RLKSVEVYDPETNKWTPLPSM---------------------PTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCc----eeeeEEEECCCCCeEccCCCC---------------------CCccccceEEEeCC
Confidence 489999986532 378899999999999998877 56899999988764
No 89
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.92 E-value=0.00069 Score=72.55 Aligned_cols=151 Identities=15% Similarity=0.234 Sum_probs=97.6
Q ss_pred EEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCC----CCcEEEEccC-CCCC
Q 002047 203 LHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAA----KPYEWRKLEP-EGEG 277 (975)
Q Consensus 203 v~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s----~~~~W~~v~~-~~~~ 277 (975)
-.+||+.+++ ++.+.+. .--+..+.+.+.++.+++.||.... ...+-.|++.. . .|..... +..
T Consensus 48 s~~yD~~tn~--~rpl~v~----td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p~~~~~~~--~w~e~~~~m~~- 116 (243)
T PF07250_consen 48 SVEYDPNTNT--FRPLTVQ----TDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTPCTSDGTC--DWTESPNDMQS- 116 (243)
T ss_pred EEEEecCCCc--EEeccCC----CCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEecCCCCCCC--CceECcccccC-
Confidence 3478999985 8777532 2223333345556689999998542 34677788765 4 7887754 433
Q ss_pred CCCcceeEEEEEeCCeEEEecCCCCCCCCccceEEeecCC---CCeEEEEECC---CCCCCCcceeeEEEeCCEEEEEcC
Q 002047 278 PPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHR---DGRWEWAIAP---GVSPSPRYQHAAVFVNARLHVSGG 351 (975)
Q Consensus 278 P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~d~~~~~~~~---~~~W~w~~~~---g~~P~~R~~hs~v~~~~~L~V~GG 351 (975)
+|.|.++....+|+++|+||... ..+.|.+.. ...+.|.-.. ...+...|-+..+.-+++|||++.
T Consensus 117 --~RWYpT~~~L~DG~vlIvGG~~~------~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an 188 (243)
T PF07250_consen 117 --GRWYPTATTLPDGRVLIVGGSNN------PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN 188 (243)
T ss_pred --CCccccceECCCCCEEEEeCcCC------CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEc
Confidence 48999999999999999999873 334454442 2223332221 122344555666666999999986
Q ss_pred cCCCCCccccCCcEEEEECCCCeE-EEcccCcC
Q 002047 352 ALGGGRMVEDSSSVAVLDTAAGVW-CDTKSVVT 383 (975)
Q Consensus 352 ~~~~~~~~~~~~dv~~yD~~t~~W-~~v~~~~~ 383 (975)
. +-.+||..++++ +.++.++.
T Consensus 189 ~-----------~s~i~d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 189 R-----------GSIIYDYKTNTVVRTLPDLPG 210 (243)
T ss_pred C-----------CcEEEeCCCCeEEeeCCCCCC
Confidence 3 255799999987 67777643
No 90
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.92 E-value=0.00072 Score=71.75 Aligned_cols=145 Identities=19% Similarity=0.222 Sum_probs=90.8
Q ss_pred CCCCCCcCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcEEEEECCCCc-----
Q 002047 87 DGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNK----- 161 (975)
Q Consensus 87 ~~P~pR~ght~t~~~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~----- 161 (975)
-.|+-|+=..+..-.+.+++ -...++.||.+.++. ..+.+|++...+..
T Consensus 18 YLPPLR~PAv~~~~~~~~~~------~~~YlIHGGrTPNNE--------------------lS~~LY~ls~~s~~cNkK~ 71 (337)
T PF03089_consen 18 YLPPLRCPAVCHLSDPSDGE------PEQYLIHGGRTPNNE--------------------LSSSLYILSVDSRGCNKKV 71 (337)
T ss_pred cCCCCCCccEeeecCCCCCC------eeeEEecCCcCCCcc--------------------cccceEEEEeecCCCCcee
Confidence 45666665544442333221 234566788877653 77788888765433
Q ss_pred ---EEEecCCCCCCCCccceEEEEe---C-CEEEEEeccCCC--CC-----------ccccEEEEEcCCCCCcEEEEEec
Q 002047 162 ---WSRITPFGEPPTPRAAHVATAV---G-TMVVIQGGIGPA--GL-----------SAEDLHVLDLTQQRPRWHRVVVQ 221 (975)
Q Consensus 162 ---W~~l~~~g~~P~pR~~hsa~~~---~-~~iyv~GG~~~~--~~-----------~~~dv~~yD~~t~~~~W~~v~~~ 221 (975)
...-.-.|+.|.+|++|++.++ | ..+++|||...- +. +...|+.+|+.-.-..-..++
T Consensus 72 tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lp-- 149 (337)
T PF03089_consen 72 TLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLP-- 149 (337)
T ss_pred EEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccch--
Confidence 3333456889999999999988 2 378999997522 11 234567778764321123344
Q ss_pred CCCCCCCcccEEEEeCCcEEEEEcCCCC--CCCCCcEEEEEC
Q 002047 222 GPGPGPRYGHVMALVGQRYLMAIGGNDG--KRPLADVWALDT 261 (975)
Q Consensus 222 g~~P~~R~~h~~~~~~~~~lyV~GG~~g--~~~~ndv~~yDl 261 (975)
.+..+..-|.+..-++ .+|++||..- +..-..++++..
T Consensus 150 -El~dG~SFHvslar~D-~VYilGGHsl~sd~Rpp~l~rlkV 189 (337)
T PF03089_consen 150 -ELQDGQSFHVSLARND-CVYILGGHSLESDSRPPRLYRLKV 189 (337)
T ss_pred -hhcCCeEEEEEEecCc-eEEEEccEEccCCCCCCcEEEEEE
Confidence 5566778888888887 9999999743 333445666533
No 91
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=97.86 E-value=0.00027 Score=72.77 Aligned_cols=65 Identities=25% Similarity=0.323 Sum_probs=44.2
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCCh-HHHHHHHHHhhhcCCCCEEEEeccccccc
Q 002047 700 IKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS-LETITLLLALKVEYPNNVHLIRGNHEAAD 776 (975)
Q Consensus 700 i~vvGDiHG~~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s-~evl~ll~~lk~~~P~~v~llrGNHE~~~ 776 (975)
|.+++||||++..|.+ ..+.....+ -+|+.||++++|... .+.+..|.. .+..+++++||||...
T Consensus 1 i~~~sD~H~~~~~~~~--~~~~~~~~D------~vv~~GDl~~~~~~~~~~~~~~l~~----~~~p~~~v~GNHD~~~ 66 (188)
T cd07392 1 ILAISDIHGDVEKLEA--IILKAEEAD------AVIVAGDITNFGGKEAAVEINLLLA----IGVPVLAVPGNCDTPE 66 (188)
T ss_pred CEEEEecCCCHHHHHH--HHhhccCCC------EEEECCCccCcCCHHHHHHHHHHHh----cCCCEEEEcCCCCCHH
Confidence 5789999999998876 222211222 688999999998763 333333332 2446999999999754
No 92
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.82 E-value=0.0017 Score=69.57 Aligned_cols=139 Identities=15% Similarity=0.193 Sum_probs=91.1
Q ss_pred cCcEEEEECCCCcEEEecCCCCCCCCccceEEEEe-CCEEEEEeccCCCCCccccEEEEEcCC--CCCcEEEEEecCCCC
Q 002047 149 TADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAV-GTMVVIQGGIGPAGLSAEDLHVLDLTQ--QRPRWHRVVVQGPGP 225 (975)
Q Consensus 149 ~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~-~~~iyv~GG~~~~~~~~~dv~~yD~~t--~~~~W~~v~~~g~~P 225 (975)
...-..||+.+++++.+... .--.+.+.+.+ ++++++.||...+ ...+..|++.+ ....|.+.. ..|-
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~----td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~--~~m~ 115 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQ----TDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESP--NDMQ 115 (243)
T ss_pred eEEEEEEecCCCcEEeccCC----CCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECc--cccc
Confidence 45566899999999998754 22333333333 5699999998653 34677788765 123588775 2489
Q ss_pred CCCcccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECC---CCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCC
Q 002047 226 GPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTA---AKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGR 300 (975)
Q Consensus 226 ~~R~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~---s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~ 300 (975)
.+|...+++.+.+++++|+||... ...+.+... ...+.|..+......-+.-.|-...+..+|+||+|+..
T Consensus 116 ~~RWYpT~~~L~DG~vlIvGG~~~----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~ 189 (243)
T PF07250_consen 116 SGRWYPTATTLPDGRVLIVGGSNN----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR 189 (243)
T ss_pred CCCccccceECCCCCEEEEeCcCC----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC
Confidence 999999999999999999999873 122333321 12234444433222222345667778889999999874
No 93
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=97.81 E-value=5e-05 Score=77.07 Aligned_cols=67 Identities=27% Similarity=0.236 Sum_probs=45.2
Q ss_pred EEEEecCCCCHHHHHHHHHH-hCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEecccccc
Q 002047 700 IKIFGDLHGQFGDLMRLFDE-YGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAA 775 (975)
Q Consensus 700 i~vvGDiHG~~~~L~~ll~~-~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~ 775 (975)
+.+++|||+....+...+.. ......+ -++++||+++++.....+. ++.. ...+..+++++||||..
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d------~li~~GDi~~~~~~~~~~~-~~~~--~~~~~~v~~v~GNHD~~ 68 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDAD------ILVLAGDIGYLTDAPRFAP-LLLA--LKGFEPVIYVPGNHEFY 68 (166)
T ss_pred CceEccccccCccccccccccCCCCCCC------EEEECCCCCCCcchHHHHH-HHHh--hcCCccEEEeCCCcceE
Confidence 46899999998877665431 1111112 5888999999987765544 2222 23345799999999986
No 94
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.79 E-value=0.0039 Score=66.34 Aligned_cols=122 Identities=20% Similarity=0.268 Sum_probs=78.5
Q ss_pred EEEEEeccCCCCCccccEEEEEcCCCC-C-c----EEEEEecCCCCCCCcccEEEEeC---CcEEEEEcCCCC-------
Q 002047 186 MVVIQGGIGPAGLSAEDLHVLDLTQQR-P-R----WHRVVVQGPGPGPRYGHVMALVG---QRYLMAIGGNDG------- 249 (975)
Q Consensus 186 ~iyv~GG~~~~~~~~~dv~~yD~~t~~-~-~----W~~v~~~g~~P~~R~~h~~~~~~---~~~lyV~GG~~g------- 249 (975)
..+|.||..+.+...+.+|++.+.+.. . | ..+-...|..|.+||+|++.++. ...+++|||..-
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 456779999988889999999887542 1 1 22333568999999999998873 336889999731
Q ss_pred -------CCCCCcEEEEECCCCCcEEEE--ccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCC-CCccceEEe
Q 002047 250 -------KRPLADVWALDTAAKPYEWRK--LEPEGEGPPPCMYATASARSDGLLLLCGGRDASS-VPLASAYGL 313 (975)
Q Consensus 250 -------~~~~ndv~~yDl~s~~~~W~~--v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~-~~l~d~~~~ 313 (975)
-.+...|+.+|++-. .++. ++-... ....+.+...++.+|+.||..-.. ...-.++++
T Consensus 120 TenWNsVvDC~P~VfLiDleFG--C~tah~lpEl~d----G~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rl 187 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFG--CCTAHTLPELQD----GQSFHVSLARNDCVYILGGHSLESDSRPPRLYRL 187 (337)
T ss_pred hhhcceeccCCCeEEEEecccc--ccccccchhhcC----CeEEEEEEecCceEEEEccEEccCCCCCCcEEEE
Confidence 113456788888665 3322 222222 244455556699999999974322 233344544
No 95
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.72 E-value=0.006 Score=65.34 Aligned_cols=206 Identities=7% Similarity=0.061 Sum_probs=114.5
Q ss_pred CcEEEEECCCCcEEEecCCCCCCCCccce-EEEEeC----C-EEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCC
Q 002047 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAH-VATAVG----T-MVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGP 223 (975)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~h-sa~~~~----~-~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~ 223 (975)
..++++||.|++|..++....++.....+ .+..++ + ||+.+...... .....+++|++.++. |+.+...
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~~~~~--Wr~~~~~-- 88 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTLGSNS--WRTIECS-- 88 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEeCCCC--ccccccC--
Confidence 36899999999999997541110001111 111222 2 67766543211 133578999999885 9988622
Q ss_pred CCCCCcccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEE-ccCCCCCCCCcceeEEEEEeCCeEEEecCCCC
Q 002047 224 GPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRK-LEPEGEGPPPCMYATASARSDGLLLLCGGRDA 302 (975)
Q Consensus 224 ~P~~R~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~-v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~ 302 (975)
.+........+.+++ .||-+.-.........|..||+.+. +|.. +..... .............+|+|.++.....
T Consensus 89 ~~~~~~~~~~v~~~G-~lyw~~~~~~~~~~~~IvsFDl~~E--~f~~~i~~P~~-~~~~~~~~~L~~~~G~L~~v~~~~~ 164 (230)
T TIGR01640 89 PPHHPLKSRGVCING-VLYYLAYTLKTNPDYFIVSFDVSSE--RFKEFIPLPCG-NSDSVDYLSLINYKGKLAVLKQKKD 164 (230)
T ss_pred CCCccccCCeEEECC-EEEEEEEECCCCCcEEEEEEEcccc--eEeeeeecCcc-ccccccceEEEEECCEEEEEEecCC
Confidence 122122222556676 7888764332222236999999999 8985 433211 1101123445566788888765432
Q ss_pred CCCCccceEEeecCCCCeEEEEECCCCCCCCcc----eeeEEEeCCEEEEEcCcCCCCCccccCCcEEEEECCCC
Q 002047 303 SSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRY----QHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAG 373 (975)
Q Consensus 303 ~~~~l~d~~~~~~~~~~~W~w~~~~g~~P~~R~----~hs~v~~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~ 373 (975)
. ..-++|.+.+.....|+..-.-+.++.+.. ....+..+++|++.... .. ..-+..||++++
T Consensus 165 ~--~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~-~~------~~~~~~y~~~~~ 230 (230)
T TIGR01640 165 T--NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED-EN------PFYIFYYNVGEN 230 (230)
T ss_pred C--CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC-CC------ceEEEEEeccCC
Confidence 2 126899987665566764333332222222 23456667888887642 10 113888998875
No 96
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=97.68 E-value=0.00018 Score=77.76 Aligned_cols=70 Identities=21% Similarity=0.302 Sum_probs=47.0
Q ss_pred CCEEEEecCCCCH------HHHHHHHHHhCCCCCCCCccceeEEEeccccCC--C-----CChHHHHHHHHHhhhcCCCC
Q 002047 698 APIKIFGDLHGQF------GDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDR--G-----QHSLETITLLLALKVEYPNN 764 (975)
Q Consensus 698 ~~i~vvGDiHG~~------~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDR--G-----~~s~evl~ll~~lk~~~P~~ 764 (975)
|++++++|+|... ..|.++|+.... ..+ .++++||++|. | +...+++.+|..|+.. +..
T Consensus 1 M~i~~iSDlHl~~~~~~~~~~~~~~l~~~~~-~~d------~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~-g~~ 72 (241)
T PRK05340 1 MPTLFISDLHLSPERPAITAAFLRFLRGEAR-QAD------ALYILGDLFEAWIGDDDPSPFAREIAAALKALSDS-GVP 72 (241)
T ss_pred CcEEEEeecCCCCCChhHHHHHHHHHHhhhc-cCC------EEEEccceeccccccCcCCHHHHHHHHHHHHHHHc-CCe
Confidence 5789999999542 235555543211 112 68889999985 2 2346777777777543 246
Q ss_pred EEEEecccccc
Q 002047 765 VHLIRGNHEAA 775 (975)
Q Consensus 765 v~llrGNHE~~ 775 (975)
|++++||||..
T Consensus 73 v~~v~GNHD~~ 83 (241)
T PRK05340 73 CYFMHGNRDFL 83 (241)
T ss_pred EEEEeCCCchh
Confidence 99999999973
No 97
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.61 E-value=0.00053 Score=66.68 Aligned_cols=107 Identities=17% Similarity=0.236 Sum_probs=73.0
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccccchhhh
Q 002047 701 KIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINAL 780 (975)
Q Consensus 701 ~vvGDiHG~~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~ 780 (975)
.||+|.||..+.+.+++... ...+ .++++||+. .+++.++..++ ...++.++||||
T Consensus 1 ~viSDtH~~~~~~~~~~~~~--~~~d------~ii~~GD~~------~~~~~~~~~~~---~~~~~~V~GN~D------- 56 (129)
T cd07403 1 LVISDTESPALYSPEIKVRL--EGVD------LILSAGDLP------KEYLEYLVTML---NVPVYYVHGNHD------- 56 (129)
T ss_pred CeeccccCccccchHHHhhC--CCCC------EEEECCCCC------hHHHHHHHHHc---CCCEEEEeCCCc-------
Confidence 38999999988777766652 2222 799999984 35566666542 224899999999
Q ss_pred cCChHHHHHHhCCcccchhhhhhhccccccceEEEEcceEEEecCCccCcccCHhhhhhccCCcccCCCCcceeccccCC
Q 002047 781 FGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSD 860 (975)
Q Consensus 781 ~gf~~e~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dllWsd 860 (975)
-+++++|+-+... ... +
T Consensus 57 -------------------------------------~~Ilv~H~pp~~~----------------~~~----------~ 73 (129)
T cd07403 57 -------------------------------------VDILLTHAPPAGI----------------GDG----------E 73 (129)
T ss_pred -------------------------------------cCEEEECCCCCcC----------------cCc----------c
Confidence 3789999743210 000 0
Q ss_pred CCCCCCCCCcccCCCCCceeeeCHHHHHHHHHHcCCeEEEEeccccccceE
Q 002047 861 PTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFE 911 (975)
Q Consensus 861 P~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~ 911 (975)
. . ..-|.+.+.++++..+.++++-||.-....+.
T Consensus 74 --~------~---------~~~g~~~l~~~l~~~~~~~vl~GH~H~~~~~~ 107 (129)
T cd07403 74 --D------F---------AHRGFEAFLDFIDRFRPKLFIHGHTHLNYGYQ 107 (129)
T ss_pred --c------c---------cccCHHHHHHHHHHHCCcEEEEcCcCCCcCcc
Confidence 0 0 12356788899999999999999998877665
No 98
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.52 E-value=1.8e-05 Score=89.69 Aligned_cols=243 Identities=12% Similarity=0.005 Sum_probs=160.1
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCCeeeecC----CEEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCC
Q 002047 670 FLDCNEIADLCDSAERIFSSEPSVLQLKA----PIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQ 745 (975)
Q Consensus 670 ~l~~~~i~~l~~~~~~~~~~ep~~l~l~~----~i~vvGDiHG~~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~ 745 (975)
.|...++..+++-+.+++..+|+...+.. -.+.++|.||.+.|+.+.++.- +... .-|++-|++|+++.
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d---P~~~----K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD---PTYI----KAYVRRGTAVMALG 86 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC---chhh----heeeeccHHHHhHH
Confidence 46778889999999999999998887642 3788999999999999988764 2211 15999999999999
Q ss_pred ChHHHHHHHHHhhhcCCCCEEEEeccccccchhhhcCChHHHHHHhCCcccchhhhhhhccccccceEEEEcceEEEecC
Q 002047 746 HSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHG 825 (975)
Q Consensus 746 ~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHg 825 (975)
...+.+..|...+...|+...+.|++||+..+-..++|..+....+++. ...++..+...+.. |++..+.+.++=-|
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~~d~-~s~~~~~~~~~~~~-~i~~~y~g~~le~~- 163 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTPEGDK-KSVVEMKIDEEDMD-LIESDYSGPVLEDH- 163 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCCccCC-cccccccccccccc-ccccccCCcccccc-
Confidence 9999999999999999999999999999999988899998887777654 22333333333222 14445554333322
Q ss_pred CccCc--------------c-----cCH-hhhh----hccCCcccCCCCcceeccccCCCCCCCCCCCcccCCCCCceee
Q 002047 826 GIGRS--------------I-----NHV-EQIE----NLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVT 881 (975)
Q Consensus 826 Gi~~~--------------~-----~~~-~~i~----~i~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~ 881 (975)
-+... + .++ ++.. .+..+.++ .+-.|..|+++... -..+-...++.+ ..
T Consensus 164 kvt~e~vk~~~~~~~~~~~L~~k~a~~i~~~~~~~~~~l~~~ve~----~~~~d~~~sv~gd~--hGqfydl~nif~-l~ 236 (476)
T KOG0376|consen 164 KVTLEFVKTLMEVFKNQKKLPKKYAYSILDLAKTILRKLPSLVEI----SVPGDVKISVCGDT--HGQFYDLLNIFE-LN 236 (476)
T ss_pred hhhHHHHHHHHHhhhcccccccccceeeHHHHhhHHhcCCcceEe----ecCCCceEEecCCc--cccccchhhhHh-hc
Confidence 11100 0 000 0111 11111111 14457788888642 122333355554 34
Q ss_pred eCHHHHHHHHHHcCCeEEEEecccc-----------ccc-eEEec---CCeEEEEeccccccC
Q 002047 882 FGPDRVMEFCNNNDLQLIVRAHECV-----------MDG-FERFA---QGHLITLFSATNYCG 929 (975)
Q Consensus 882 fg~~~~~~fl~~~~l~~iiR~H~~~-----------~~G-~~~~~---~~~~iTvfSa~~y~~ 929 (975)
.+++....||.+.++.-+++.|.-+ +++ |...+ .+.++++|+++.++-
T Consensus 237 g~Ps~t~~ylfngdfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~ 299 (476)
T KOG0376|consen 237 GLPSETNPYLFNGDFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVK 299 (476)
T ss_pred CCCCCcccccccCceeeecccceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchh
Confidence 5677778888888888888888654 222 22111 235889999988763
No 99
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=97.46 E-value=0.0017 Score=64.11 Aligned_cols=29 Identities=10% Similarity=0.167 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHcCCeEEEEeccccccceE
Q 002047 883 GPDRVMEFCNNNDLQLIVRAHECVMDGFE 911 (975)
Q Consensus 883 g~~~~~~fl~~~~l~~iiR~H~~~~~G~~ 911 (975)
+.+.+.+++++.+.++++-||.-....+.
T Consensus 101 ~~~~~~~~l~~~~~~~~l~GH~H~~~~~~ 129 (144)
T cd07400 101 DAGDALKLLAEAGVDLVLHGHKHVPYVGN 129 (144)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCcCeee
Confidence 55678889999999999999997755544
No 100
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=97.41 E-value=0.00031 Score=77.34 Aligned_cols=70 Identities=20% Similarity=0.082 Sum_probs=50.0
Q ss_pred CCEEEEecCCCC----HHHHHHHHHHhCCCCCCCCccceeEEEeccccCCC--CChHHHHHHHHHhhhcCCCCEEEEecc
Q 002047 698 APIKIFGDLHGQ----FGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRG--QHSLETITLLLALKVEYPNNVHLIRGN 771 (975)
Q Consensus 698 ~~i~vvGDiHG~----~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG--~~s~evl~ll~~lk~~~P~~v~llrGN 771 (975)
.+|.+++|||.. ...+.++++.......+ -++++|||+|++ ....+++.+|..|+... .++.+.||
T Consensus 50 ~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pD------lVli~GD~~d~~~~~~~~~~~~~L~~L~~~~--pv~~V~GN 121 (271)
T PRK11340 50 FKILFLADLHYSRFVPLSLISDAIALGIEQKPD------LILLGGDYVLFDMPLNFSAFSDVLSPLAECA--PTFACFGN 121 (271)
T ss_pred cEEEEEcccCCCCcCCHHHHHHHHHHHHhcCCC------EEEEccCcCCCCccccHHHHHHHHHHHhhcC--CEEEecCC
Confidence 579999999976 45577777765432222 688899999954 23345667777776544 49999999
Q ss_pred cccc
Q 002047 772 HEAA 775 (975)
Q Consensus 772 HE~~ 775 (975)
||..
T Consensus 122 HD~~ 125 (271)
T PRK11340 122 HDRP 125 (271)
T ss_pred CCcc
Confidence 9973
No 101
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=97.37 E-value=0.009 Score=63.40 Aligned_cols=71 Identities=13% Similarity=0.111 Sum_probs=38.9
Q ss_pred eCHHHHHHHHHHc-CCeEEEEeccccccceEEe-----cCCeEEEEeccccccCCCCC-cEEEEEEcCC-ceEEeEEecC
Q 002047 882 FGPDRVMEFCNNN-DLQLIVRAHECVMDGFERF-----AQGHLITLFSATNYCGTANN-AGAILVLGRD-LVVVPKLIHP 953 (975)
Q Consensus 882 fg~~~~~~fl~~~-~l~~iiR~H~~~~~G~~~~-----~~~~~iTvfSa~~y~~~~~n-~ga~l~i~~~-~~~~~~~~~~ 953 (975)
.+...+.+.++++ ++++++-||.-. .+.... .++.+..+++........+| .=.++.++.+ .++.++.+.|
T Consensus 135 ~~~~~~~~ll~~~~~V~~v~~GH~H~-~~~~~~~~~~~~g~~v~~~~~~~q~~~~~g~~~~r~~~f~~~~~~i~~~tysp 213 (214)
T cd07399 135 DGQQIWDKLVKKNDNVFMVLSGHVHG-AGRTTLVSVGDAGRTVHQMLADYQGEPNGGNGFLRLLEFDPDNNKIDVRTYSP 213 (214)
T ss_pred cHHHHHHHHHhCCCCEEEEEccccCC-CceEEEcccCCCCCEeeEEeecccCCCCCCcceEEEEEEecCCCEEEEEeCCC
Confidence 4566788889888 899999999654 333332 13345555432211111111 1144555555 4666666554
No 102
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=97.36 E-value=0.0062 Score=62.00 Aligned_cols=65 Identities=17% Similarity=0.252 Sum_probs=43.8
Q ss_pred CCEEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccccc
Q 002047 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAAD 776 (975)
Q Consensus 698 ~~i~vvGDiHG~~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~ 776 (975)
++|.|++|.||...+..+.++.......+ -+|.+||++...... +|......+++.+|||.|...
T Consensus 2 m~ilviSDtH~~~~~~~~~~~~~~~~~~d------~vih~GD~~~~~~~~--------~l~~~~~~~i~~V~GN~D~~~ 66 (172)
T COG0622 2 MKILVISDTHGPLRAIEKALKIFNLEKVD------AVIHAGDSTSPFTLD--------ALEGGLAAKLIAVRGNCDGEV 66 (172)
T ss_pred cEEEEEeccCCChhhhhHHHHHhhhcCCC------EEEECCCcCCccchH--------HhhcccccceEEEEccCCCcc
Confidence 67899999999997555555544333333 578899999865432 111102368999999999843
No 103
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=97.34 E-value=0.00035 Score=74.35 Aligned_cols=70 Identities=30% Similarity=0.300 Sum_probs=49.9
Q ss_pred CCEEEEecCCCCHH----HHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChH-HHHHHHHHhhhcCCCCEEEEeccc
Q 002047 698 APIKIFGDLHGQFG----DLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSL-ETITLLLALKVEYPNNVHLIRGNH 772 (975)
Q Consensus 698 ~~i~vvGDiHG~~~----~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~-evl~ll~~lk~~~P~~v~llrGNH 772 (975)
.+|.+++|+|.... .+.++++.+.....+ -+|++||++|.+.... ++..++..++ .+..++++.|||
T Consensus 2 ~~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d------~vl~~GD~~~~~~~~~~~~~~~l~~l~--~~~~v~~v~GNH 73 (223)
T cd07385 2 LRIAHLSDLHLGPFVSRERLERLVEKINALKPD------LVVLTGDLVDGSVDVLELLLELLKKLK--APLGVYAVLGNH 73 (223)
T ss_pred CEEEEEeecCCCccCCHHHHHHHHHHHhccCCC------EEEEcCcccCCcchhhHHHHHHHhccC--CCCCEEEECCCc
Confidence 47899999998743 666777665432222 6888999999987765 5555555543 234699999999
Q ss_pred ccc
Q 002047 773 EAA 775 (975)
Q Consensus 773 E~~ 775 (975)
|..
T Consensus 74 D~~ 76 (223)
T cd07385 74 DYY 76 (223)
T ss_pred ccc
Confidence 984
No 104
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=97.24 E-value=0.00086 Score=72.05 Aligned_cols=180 Identities=12% Similarity=0.135 Sum_probs=89.4
Q ss_pred EEEEecCCCCH------HHHHHHHHHhCCCCCCCCccceeEEEeccccCCC--C---C--hHHHHHHHHHhhhcCCCCEE
Q 002047 700 IKIFGDLHGQF------GDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRG--Q---H--SLETITLLLALKVEYPNNVH 766 (975)
Q Consensus 700 i~vvGDiHG~~------~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG--~---~--s~evl~ll~~lk~~~P~~v~ 766 (975)
+++++|+|... ..|++.|..... ..+ .+|++||++|.. . . ..+++.+|..|+.. +..|+
T Consensus 1 ~~~iSDlHl~~~~~~~~~~~l~~l~~~~~-~~d------~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~-~~~v~ 72 (231)
T TIGR01854 1 TLFISDLHLSPERPDITALFLDFLREEAR-KAD------ALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQ-GVPCY 72 (231)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHHhhhc-cCC------EEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHC-CCeEE
Confidence 36899999543 234444444321 122 688899999952 1 1 23556666666543 35799
Q ss_pred EEeccccccchhhhcCChHHHHHHhCCcccchhhhhhhccccccceEEEEcceEEEecCCccCccc-CHhhhhhccC-Cc
Q 002047 767 LIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRSIN-HVEQIENLQR-PI 844 (975)
Q Consensus 767 llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHgGi~~~~~-~~~~i~~i~r-p~ 844 (975)
+++||||...-. ...+..| ..++..--..-+-+.+++++||-.-..-. ...-.+++-| |.
T Consensus 73 ~v~GNHD~~~~~-------~~~~~~g-----------i~~l~~~~~~~~~g~~ill~HGd~~~~~d~~y~~~r~~~r~~~ 134 (231)
T TIGR01854 73 FMHGNRDFLIGK-------RFAREAG-----------MTLLPDPSVIDLYGQKVLLMHGDTLCTDDTAYQAFRAKVHQPW 134 (231)
T ss_pred EEcCCCchhhhH-------HHHHHCC-----------CEEECCCEEEEECCEEEEEEcCccccCCCHHHHHHHHHHhCHH
Confidence 999999973211 0111111 11222211112235689999997643111 1111122211 11
Q ss_pred cc------CC-CCcceeccccCCCCCCCCCCCcccCCCCCceeeeCHHHHHHHHHHcCCeEEEEeccccccceEE
Q 002047 845 TM------EA-GSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFER 912 (975)
Q Consensus 845 ~~------~~-~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~ 912 (975)
.. +. ....+...+++-.... .. .+..-.....+..+.++++..+.+++|-||.-.+.=+..
T Consensus 135 ~~~~~~~l~~~~r~~l~~~~~~~s~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~GHtH~~~~~~~ 202 (231)
T TIGR01854 135 LQRLFLHLPLAVRVKLARKIRAESRAD---KQ----MKSQDIMDVNPAEVAAVMRRYGVDRLIHGHTHRPAIHPL 202 (231)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHh---cC----CCcchhhCCCHHHHHHHHHHcCCCEEEECCccCcceeec
Confidence 00 00 0001223333321110 00 000012334678889999999999999999866544433
No 105
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.05 E-value=0.34 Score=56.29 Aligned_cols=187 Identities=17% Similarity=0.178 Sum_probs=102.1
Q ss_pred cEEEEECCCCc--EEEecCCCC-----CCCCccceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCC
Q 002047 151 DVHCYDVLTNK--WSRITPFGE-----PPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGP 223 (975)
Q Consensus 151 dv~~yD~~t~~--W~~l~~~g~-----~P~pR~~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~ 223 (975)
.+++||..+++ |+.-..... .+.++..-+.++.+++||+.+. ...++.+|..+....|+.-.
T Consensus 80 ~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~---- 148 (394)
T PRK11138 80 LVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE-------KGQVYALNAEDGEVAWQTKV---- 148 (394)
T ss_pred eEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC-------CCEEEEEECCCCCCcccccC----
Confidence 67889987654 875432100 0012333345666788887543 24699999988777797643
Q ss_pred CCCCCcccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCC
Q 002047 224 GPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDAS 303 (975)
Q Consensus 224 ~P~~R~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~ 303 (975)
+..- ..+-++.++ .+|+..+ -..++.||+.+....|+.-...+. ...+...+-++.++.+|+..+ +
T Consensus 149 -~~~~-~ssP~v~~~-~v~v~~~------~g~l~ald~~tG~~~W~~~~~~~~--~~~~~~~sP~v~~~~v~~~~~-~-- 214 (394)
T PRK11138 149 -AGEA-LSRPVVSDG-LVLVHTS------NGMLQALNESDGAVKWTVNLDVPS--LTLRGESAPATAFGGAIVGGD-N-- 214 (394)
T ss_pred -CCce-ecCCEEECC-EEEEECC------CCEEEEEEccCCCEeeeecCCCCc--ccccCCCCCEEECCEEEEEcC-C--
Confidence 1111 122234454 7777543 136999999998888987543211 000111222344677666433 1
Q ss_pred CCCccceEEeecCCCCeEEEEECCCCCCC----Cc---ceeeEEEeCCEEEEEcCcCCCCCccccCCcEEEEECCCC--e
Q 002047 304 SVPLASAYGLAKHRDGRWEWAIAPGVSPS----PR---YQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAG--V 374 (975)
Q Consensus 304 ~~~l~d~~~~~~~~~~~W~w~~~~g~~P~----~R---~~hs~v~~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~--~ 374 (975)
..++.++.. +++-.|......+.. .| ...+-++.++.+|+.+. ...++++|++++ .
T Consensus 215 ----g~v~a~d~~-~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~----------~g~l~ald~~tG~~~ 279 (394)
T PRK11138 215 ----GRVSAVLME-QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY----------NGNLVALDLRSGQIV 279 (394)
T ss_pred ----CEEEEEEcc-CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc----------CCeEEEEECCCCCEE
Confidence 234555443 444455433221111 01 12344567888888642 234899999987 4
Q ss_pred EEE
Q 002047 375 WCD 377 (975)
Q Consensus 375 W~~ 377 (975)
|+.
T Consensus 280 W~~ 282 (394)
T PRK11138 280 WKR 282 (394)
T ss_pred Eee
Confidence 764
No 106
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=97.01 E-value=0.0014 Score=70.86 Aligned_cols=68 Identities=26% Similarity=0.215 Sum_probs=46.3
Q ss_pred CEEEEecCCCCH------HHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccc
Q 002047 699 PIKIFGDLHGQF------GDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNH 772 (975)
Q Consensus 699 ~i~vvGDiHG~~------~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNH 772 (975)
+|.+++|+|.++ ..|.++++.+.-...+ -+|+.||++++.....+++..|..+ .+..|+++.|||
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d------~vv~~GDl~~~~~~~~~~~~~l~~~---~~~pv~~v~GNH 71 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKID------HLHIAGDISNDFQRSLPFIEKLQEL---KGIKVTFNAGNH 71 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCC------EEEECCccccchhhHHHHHHHHHHh---cCCcEEEECCCC
Confidence 478999999764 1245566655322222 6889999999876666655555543 334699999999
Q ss_pred ccc
Q 002047 773 EAA 775 (975)
Q Consensus 773 E~~ 775 (975)
|..
T Consensus 72 D~~ 74 (239)
T TIGR03729 72 DML 74 (239)
T ss_pred CCC
Confidence 974
No 107
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=97.01 E-value=0.0026 Score=64.74 Aligned_cols=40 Identities=35% Similarity=0.535 Sum_probs=29.9
Q ss_pred eEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccccch
Q 002047 733 DYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADI 777 (975)
Q Consensus 733 ~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~ 777 (975)
.+|++||+++++..... +.+|.++ +..+++++||||....
T Consensus 45 ~vi~~GDl~~~~~~~~~-~~~l~~~----~~~~~~v~GNHD~~~~ 84 (168)
T cd07390 45 TVYHLGDFSFGGKAGTE-LELLSRL----NGRKHLIKGNHDSSLE 84 (168)
T ss_pred EEEEeCCCCCCCChHHH-HHHHHhC----CCCeEEEeCCCCchhh
Confidence 79999999999986644 4444433 3469999999997543
No 108
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=97.00 E-value=0.0013 Score=67.38 Aligned_cols=43 Identities=26% Similarity=0.271 Sum_probs=27.0
Q ss_pred eEEEeccccCCCCCh--HHHHHHHHHhhhcCCCCEEEEecccccc
Q 002047 733 DYLFLGDYVDRGQHS--LETITLLLALKVEYPNNVHLIRGNHEAA 775 (975)
Q Consensus 733 ~~vfLGDyVDRG~~s--~evl~ll~~lk~~~P~~v~llrGNHE~~ 775 (975)
.+|++||++|..... .+...+-+.........+++++||||..
T Consensus 44 ~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~GNHD~~ 88 (172)
T cd07391 44 RLIILGDLKHSFGGLSRQEFEEVAFLRLLAKDVDVILIRGNHDGG 88 (172)
T ss_pred EEEEeCcccccccccCHHHHHHHHHHHhccCCCeEEEEcccCccc
Confidence 799999999865433 2222211111223345799999999984
No 109
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=96.93 E-value=0.042 Score=60.12 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=33.4
Q ss_pred HHHHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEeccccccCCCCCcE-EEEEEcCC
Q 002047 884 PDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAG-AILVLGRD 943 (975)
Q Consensus 884 ~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~g-a~l~i~~~ 943 (975)
...+.+.|++.++++++-||.-....... +|--+.+-.++.++....+.| .++.++++
T Consensus 195 ~~~l~~ll~~~~V~~v~~GH~H~~~~~~~--~g~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 253 (262)
T cd07395 195 RKPLLDKFKKAGVKAVFSGHYHRNAGGRY--GGLEMVVTSAIGAQLGNDKSGLRIVKVTED 253 (262)
T ss_pred HHHHHHHHHhcCceEEEECccccCCceEE--CCEEEEEcCceecccCCCCCCcEEEEECCC
Confidence 34677788899999999999987665432 342222223333332223333 35556544
No 110
>PRK04036 DNA polymerase II small subunit; Validated
Probab=96.87 E-value=0.0045 Score=74.04 Aligned_cols=120 Identities=18% Similarity=0.195 Sum_probs=61.2
Q ss_pred cCCEEEEecCC-CCH----HHHHHHHHHhC-CCCCCCC--ccceeEEEeccccCC-CCCh---------------HHHHH
Q 002047 697 KAPIKIFGDLH-GQF----GDLMRLFDEYG-SPSTAGD--IAYIDYLFLGDYVDR-GQHS---------------LETIT 752 (975)
Q Consensus 697 ~~~i~vvGDiH-G~~----~~L~~ll~~~g-~~~~~~~--~~~~~~vfLGDyVDR-G~~s---------------~evl~ 752 (975)
...+++++||| |.. ..+..+++.+. ......+ -.-..+|++||+||. |.+. .++..
T Consensus 243 ~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~~ 322 (504)
T PRK04036 243 KVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAAE 322 (504)
T ss_pred ccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHHHH
Confidence 35789999999 653 22344444332 2111000 001178999999994 3211 13445
Q ss_pred HHHHhhhcCCCCEEEEeccccccchhhhc-CChHHHHHHhCCcccchhhhhhhccccccceEEEEc-ceEEEecCCc
Q 002047 753 LLLALKVEYPNNVHLIRGNHEAADINALF-GFRIECIERMGERDGIWAWHRINRLFNWLPLAALIE-KKIICMHGGI 827 (975)
Q Consensus 753 ll~~lk~~~P~~v~llrGNHE~~~~~~~~-gf~~e~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~-~~il~vHgGi 827 (975)
+|..|.. .-.|++++||||........ .+.......+.. .-..++.. |....++ .+++++||-.
T Consensus 323 ~L~~L~~--~i~V~~ipGNHD~~~~~lPQ~~l~~~l~~~l~~--------~~v~~lsN-P~~i~l~G~~iLl~HG~~ 388 (504)
T PRK04036 323 YLKQIPE--DIKIIISPGNHDAVRQAEPQPAFPEEIRSLFPE--------HNVTFVSN-PALVNLHGVDVLIYHGRS 388 (504)
T ss_pred HHHhhhc--CCeEEEecCCCcchhhccCCCCccHHHHHhcCc--------CCeEEecC-CeEEEECCEEEEEECCCC
Confidence 5555432 23699999999975533221 122222111111 11223333 6544444 4889999965
No 111
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.86 E-value=0.0024 Score=69.55 Aligned_cols=72 Identities=25% Similarity=0.295 Sum_probs=46.3
Q ss_pred CCEEEEecCC-CC-----------HHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHH----HHHHHhhhcC
Q 002047 698 APIKIFGDLH-GQ-----------FGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETI----TLLLALKVEY 761 (975)
Q Consensus 698 ~~i~vvGDiH-G~-----------~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl----~ll~~lk~~~ 761 (975)
++++.++|+| |. +..|.++++.+.....+ .+|+.||++|+...+.+.. .+|..|+...
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D------~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~ 74 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQID------ALLVAGDVFDTANPPAEAQELFNAFFRNLSDAN 74 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCC------EEEECCccCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 5789999999 32 22344555444222222 6889999999886655433 3444554443
Q ss_pred CCCEEEEecccccc
Q 002047 762 PNNVHLIRGNHEAA 775 (975)
Q Consensus 762 P~~v~llrGNHE~~ 775 (975)
|-.|+++.||||..
T Consensus 75 ~i~v~~i~GNHD~~ 88 (253)
T TIGR00619 75 PIPIVVISGNHDSA 88 (253)
T ss_pred CceEEEEccCCCCh
Confidence 35699999999984
No 112
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=96.81 E-value=0.0022 Score=67.95 Aligned_cols=73 Identities=22% Similarity=0.243 Sum_probs=46.0
Q ss_pred CEEEEecCC-CCH--------------HHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcC--
Q 002047 699 PIKIFGDLH-GQF--------------GDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEY-- 761 (975)
Q Consensus 699 ~i~vvGDiH-G~~--------------~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~-- 761 (975)
+|+.++|+| |.. ..|.++++.+.....+ .+|+.||++|....+.+.+..+...-.++
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~ 74 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVD------FVLIAGDLFDSNNPSPEALELLIEALRRLKE 74 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCC------EEEECCcccCCCCCCHHHHHHHHHHHHHHHH
Confidence 578999999 432 2355565554332222 58999999998875554443333322222
Q ss_pred -CCCEEEEeccccccch
Q 002047 762 -PNNVHLIRGNHEAADI 777 (975)
Q Consensus 762 -P~~v~llrGNHE~~~~ 777 (975)
.-.++++.||||....
T Consensus 75 ~~~~v~~~~GNHD~~~~ 91 (223)
T cd00840 75 AGIPVFIIAGNHDSPSR 91 (223)
T ss_pred CCCCEEEecCCCCCccc
Confidence 3469999999998654
No 113
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=96.79 E-value=0.0032 Score=69.18 Aligned_cols=73 Identities=23% Similarity=0.350 Sum_probs=47.4
Q ss_pred CEEEEecCC-CC------------HHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCC-hHHHHHHHHHhhhcCCCC
Q 002047 699 PIKIFGDLH-GQ------------FGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQH-SLETITLLLALKVEYPNN 764 (975)
Q Consensus 699 ~i~vvGDiH-G~------------~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~-s~evl~ll~~lk~~~P~~ 764 (975)
++.+++|+| +. ...|.++++.+.....+ -+|++||+++.|.. +.+-+..++++-...+-.
T Consensus 2 r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d------~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p 75 (267)
T cd07396 2 RFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLD------FVVQLGDIIDGDNARAEEALDAVLAILDRLKGP 75 (267)
T ss_pred eEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCC------EEEECCCeecCCCchHHHHHHHHHHHHHhcCCC
Confidence 578999999 22 35666777766432222 58889999998873 223333333333333346
Q ss_pred EEEEeccccccch
Q 002047 765 VHLIRGNHEAADI 777 (975)
Q Consensus 765 v~llrGNHE~~~~ 777 (975)
++++.||||....
T Consensus 76 ~~~v~GNHD~~~~ 88 (267)
T cd07396 76 VHHVLGNHDLYNP 88 (267)
T ss_pred EEEecCccccccc
Confidence 9999999998643
No 114
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.78 E-value=0.96 Score=48.00 Aligned_cols=181 Identities=19% Similarity=0.222 Sum_probs=104.9
Q ss_pred CcEEEEECCCCc--EEEecCCCCCCCCccceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEE-EEecCCCCC
Q 002047 150 ADVHCYDVLTNK--WSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHR-VVVQGPGPG 226 (975)
Q Consensus 150 ~dv~~yD~~t~~--W~~l~~~g~~P~pR~~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~-v~~~g~~P~ 226 (975)
..+++||..+++ |+.-... +.....+..++.||+..+ .+.++.+|..+....|+. .......+
T Consensus 46 ~~l~~~d~~tG~~~W~~~~~~------~~~~~~~~~~~~v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~~~~~~- 111 (238)
T PF13360_consen 46 GNLYALDAKTGKVLWRFDLPG------PISGAPVVDGGRVYVGTS-------DGSLYALDAKTGKVLWSIYLTSSPPAG- 111 (238)
T ss_dssp SEEEEEETTTSEEEEEEECSS------CGGSGEEEETTEEEEEET-------TSEEEEEETTTSCEEEEEEE-SSCTCS-
T ss_pred CEEEEEECCCCCEEEEeeccc------cccceeeecccccccccc-------eeeeEecccCCcceeeeeccccccccc-
Confidence 489999998775 7765422 222224677888888863 237999998887778984 43211111
Q ss_pred CCcccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCC----cceeEEEEEeCCeEEEecCCCC
Q 002047 227 PRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPP----CMYATASARSDGLLLLCGGRDA 302 (975)
Q Consensus 227 ~R~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~----r~~~~a~~~~~g~lyvfGG~~~ 302 (975)
.+......+.++ .+|+... -..++.+|+++....|+.-...+....+ .......++.++.+|++.+...
T Consensus 112 ~~~~~~~~~~~~-~~~~~~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~ 184 (238)
T PF13360_consen 112 VRSSSSPAVDGD-RLYVGTS------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR 184 (238)
T ss_dssp TB--SEEEEETT-EEEEEET------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS
T ss_pred cccccCceEecC-EEEEEec------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe
Confidence 233444444454 6666543 3579999999988889885533221000 0112334455678888766432
Q ss_pred CCCCccceEEeecCCCCeEEEEECCCCCCCCcceeeEEEeCCEEEEEcCcCCCCCccccCCcEEEEECCCCe
Q 002047 303 SSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGV 374 (975)
Q Consensus 303 ~~~~l~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v~~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~ 374 (975)
+..+ +..++.-.|...... ........++.||+.. . ...++++|++|++
T Consensus 185 -------~~~~-d~~tg~~~w~~~~~~-----~~~~~~~~~~~l~~~~-~---------~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 185 -------VVAV-DLATGEKLWSKPISG-----IYSLPSVDGGTLYVTS-S---------DGRLYALDLKTGK 233 (238)
T ss_dssp -------EEEE-ETTTTEEEEEECSS------ECECEECCCTEEEEEE-T---------TTEEEEEETTTTE
T ss_pred -------EEEE-ECCCCCEEEEecCCC-----ccCCceeeCCEEEEEe-C---------CCEEEEEECCCCC
Confidence 5666 445555446333111 1222455677888765 2 2459999999984
No 115
>PHA02546 47 endonuclease subunit; Provisional
Probab=96.70 E-value=0.0032 Score=71.67 Aligned_cols=72 Identities=24% Similarity=0.350 Sum_probs=45.4
Q ss_pred CCEEEEecCC-C-----------CHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCC-CChHHHHHHHHH----hhhc
Q 002047 698 APIKIFGDLH-G-----------QFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRG-QHSLETITLLLA----LKVE 760 (975)
Q Consensus 698 ~~i~vvGDiH-G-----------~~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG-~~s~evl~ll~~----lk~~ 760 (975)
++++.++|+| | +...|.++++.+.-...+ .+|+.||++|+. +.+.+++.++.. +-..
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD------~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~ 74 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGIT------TWIQLGDTFDVRKAITQNTMNFVREKIFDLLKE 74 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCC------EEEECCcccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5789999999 4 223445555544322222 688899999985 455555444433 1122
Q ss_pred CCCCEEEEecccccc
Q 002047 761 YPNNVHLIRGNHEAA 775 (975)
Q Consensus 761 ~P~~v~llrGNHE~~ 775 (975)
.+-.|++|.||||..
T Consensus 75 ~gi~v~~I~GNHD~~ 89 (340)
T PHA02546 75 AGITLHVLVGNHDMY 89 (340)
T ss_pred CCCeEEEEccCCCcc
Confidence 345799999999974
No 116
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=96.60 E-value=0.0049 Score=65.18 Aligned_cols=28 Identities=7% Similarity=0.025 Sum_probs=21.6
Q ss_pred eCHHHHHHHHHHcCCeEEEEeccccccc
Q 002047 882 FGPDRVMEFCNNNDLQLIVRAHECVMDG 909 (975)
Q Consensus 882 fg~~~~~~fl~~~~l~~iiR~H~~~~~G 909 (975)
.....+.+.++..+.+++|-||.-...-
T Consensus 176 ~~~~~~~~~~~~~~~~~~i~GH~H~~~~ 203 (217)
T cd07398 176 VFEEAVARLARRKGVDGVICGHTHRPAL 203 (217)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCCe
Confidence 3455677778899999999999876443
No 117
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=96.60 E-value=0.059 Score=59.46 Aligned_cols=74 Identities=27% Similarity=0.328 Sum_probs=50.3
Q ss_pred CCEEEEecCCCC------HHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHh--hhcCCCCEEEEe
Q 002047 698 APIKIFGDLHGQ------FGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLAL--KVEYPNNVHLIR 769 (975)
Q Consensus 698 ~~i~vvGDiHG~------~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~l--k~~~P~~v~llr 769 (975)
++|..|.|+|-- ...+..+++.+.....+ -+|+.||+.++|. ..| ...+..+ +...+..+++++
T Consensus 1 ~~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D------~~v~tGDl~~~~~-~~~-~~~~~~~l~~~~~~~~~~~vp 72 (301)
T COG1409 1 MRIAHISDLHLGALGVDSEELLEALLAAIEQLKPD------LLVVTGDLTNDGE-PEE-YRRLKELLARLELPAPVIVVP 72 (301)
T ss_pred CeEEEEecCcccccccchHHHHHHHHHHHhcCCCC------EEEEccCcCCCCC-HHH-HHHHHHHHhhccCCCceEeeC
Confidence 368899999977 34556666777644333 6899999999963 222 2222222 236677899999
Q ss_pred ccccccchhh
Q 002047 770 GNHEAADINA 779 (975)
Q Consensus 770 GNHE~~~~~~ 779 (975)
||||....+.
T Consensus 73 GNHD~~~~~~ 82 (301)
T COG1409 73 GNHDARVVNG 82 (301)
T ss_pred CCCcCCchHH
Confidence 9999976654
No 118
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=96.59 E-value=0.0042 Score=67.77 Aligned_cols=70 Identities=20% Similarity=0.328 Sum_probs=44.0
Q ss_pred EEEEecCCCCHHHHHHHHHHhCC---CCCCCCccceeEEEeccccCCCC-ChHHHHH------HHHHh------hhcCCC
Q 002047 700 IKIFGDLHGQFGDLMRLFDEYGS---PSTAGDIAYIDYLFLGDYVDRGQ-HSLETIT------LLLAL------KVEYPN 763 (975)
Q Consensus 700 i~vvGDiHG~~~~L~~ll~~~g~---~~~~~~~~~~~~vfLGDyVDRG~-~s~evl~------ll~~l------k~~~P~ 763 (975)
|+|+||+||+++.|.+.++.... .+.+ -+|++||+-..+. ..++.+. -+..+ ....|-
T Consensus 1 i~v~Gd~HG~~~~~~~~~~~~~~~~~~~~D------~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~ 74 (262)
T cd00844 1 IAVEGCCHGELDKIYETLEKIEKKEGTKVD------LLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPI 74 (262)
T ss_pred CEEEecCCccHHHHHHHHHHHHHhcCCCCc------EEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCe
Confidence 68999999999988775554321 1222 5888999975443 3333331 11111 233566
Q ss_pred CEEEEecccccc
Q 002047 764 NVHLIRGNHEAA 775 (975)
Q Consensus 764 ~v~llrGNHE~~ 775 (975)
-+++|-||||..
T Consensus 75 ~t~fi~GNHE~~ 86 (262)
T cd00844 75 LTIFIGGNHEAS 86 (262)
T ss_pred eEEEECCCCCCH
Confidence 689999999974
No 119
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.56 E-value=0.58 Score=54.39 Aligned_cols=180 Identities=17% Similarity=0.222 Sum_probs=101.2
Q ss_pred CcEEEEECCCCc--EEEecCCCCCCCCccceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEec--CCCC
Q 002047 150 ADVHCYDVLTNK--WSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQ--GPGP 225 (975)
Q Consensus 150 ~dv~~yD~~t~~--W~~l~~~g~~P~pR~~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~--g~~P 225 (975)
+.++.||+.+++ |+.-.... ....+...+-++.++.+|+..+ ...++.+|..+....|+.-... +...
T Consensus 170 g~l~ald~~tG~~~W~~~~~~~-~~~~~~~~sP~v~~~~v~~~~~-------~g~v~a~d~~~G~~~W~~~~~~~~~~~~ 241 (394)
T PRK11138 170 GMLQALNESDGAVKWTVNLDVP-SLTLRGESAPATAFGGAIVGGD-------NGRVSAVLMEQGQLIWQQRISQPTGATE 241 (394)
T ss_pred CEEEEEEccCCCEeeeecCCCC-cccccCCCCCEEECCEEEEEcC-------CCEEEEEEccCChhhheeccccCCCccc
Confidence 468999998775 87754320 0111222233445667666443 2468889998876678753211 1000
Q ss_pred CCC---cccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCC
Q 002047 226 GPR---YGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDA 302 (975)
Q Consensus 226 ~~R---~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~ 302 (975)
..| ...+-++.++ .+|+.+. + ..++++|+.+....|+.-.. .. ...++.+++||+....
T Consensus 242 ~~~~~~~~~sP~v~~~-~vy~~~~-~-----g~l~ald~~tG~~~W~~~~~--~~-------~~~~~~~~~vy~~~~~-- 303 (394)
T PRK11138 242 IDRLVDVDTTPVVVGG-VVYALAY-N-----GNLVALDLRSGQIVWKREYG--SV-------NDFAVDGGRIYLVDQN-- 303 (394)
T ss_pred hhcccccCCCcEEECC-EEEEEEc-C-----CeEEEEECCCCCEEEeecCC--Cc-------cCcEEECCEEEEEcCC--
Confidence 001 1123344555 7887653 2 36999999988778986321 11 1234568899987531
Q ss_pred CCCCccceEEeecCCCCeEEEEECCCCCCCCcceeeEEEeCCEEEEEcCcCCCCCccccCCcEEEEECCCCe
Q 002047 303 SSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGV 374 (975)
Q Consensus 303 ~~~~l~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v~~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~ 374 (975)
..++.++.. +++-.|.... ...+...+.++.+++||+... ...++++|+.+++
T Consensus 304 -----g~l~ald~~-tG~~~W~~~~---~~~~~~~sp~v~~g~l~v~~~----------~G~l~~ld~~tG~ 356 (394)
T PRK11138 304 -----DRVYALDTR-GGVELWSQSD---LLHRLLTAPVLYNGYLVVGDS----------EGYLHWINREDGR 356 (394)
T ss_pred -----CeEEEEECC-CCcEEEcccc---cCCCcccCCEEECCEEEEEeC----------CCEEEEEECCCCC
Confidence 346777654 4444454321 112333445667899987532 2348899998874
No 120
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.43 E-value=1.6 Score=46.25 Aligned_cols=182 Identities=21% Similarity=0.301 Sum_probs=104.3
Q ss_pred cEEEEECCCCc--EEEecCCCCCCCCccceE--EEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCC
Q 002047 151 DVHCYDVLTNK--WSRITPFGEPPTPRAAHV--ATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPG 226 (975)
Q Consensus 151 dv~~yD~~t~~--W~~l~~~g~~P~pR~~hs--a~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~ 226 (975)
.+.++|+.+++ |+.-.. + +..+.. .+..++.+|+..+ ...+++||..+....|+.-. +.
T Consensus 4 ~l~~~d~~tG~~~W~~~~~----~-~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~~~-----~~ 66 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLG----P-GIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKVLWRFDL-----PG 66 (238)
T ss_dssp EEEEEETTTTEEEEEEECS----S-SCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEEEEEEEC-----SS
T ss_pred EEEEEECCCCCEEEEEECC----C-CCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCEEEEeec-----cc
Confidence 57788887664 777321 1 122222 3346788888843 36899999988766687653 21
Q ss_pred CCcccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEE-EccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCC
Q 002047 227 PRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWR-KLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSV 305 (975)
Q Consensus 227 ~R~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~-~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~ 305 (975)
+........++ .+|+..+ -+.+++||..+....|+ .....+. ..........+.++.+|+...
T Consensus 67 -~~~~~~~~~~~-~v~v~~~------~~~l~~~d~~tG~~~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------ 130 (238)
T PF13360_consen 67 -PISGAPVVDGG-RVYVGTS------DGSLYALDAKTGKVLWSIYLTSSPP--AGVRSSSSPAVDGDRLYVGTS------ 130 (238)
T ss_dssp -CGGSGEEEETT-EEEEEET------TSEEEEEETTTSCEEEEEEE-SSCT--CSTB--SEEEEETTEEEEEET------
T ss_pred -cccceeeeccc-ccccccc------eeeeEecccCCcceeeeeccccccc--cccccccCceEecCEEEEEec------
Confidence 22222455565 7887762 12799999999988999 4544221 112333344455777776543
Q ss_pred CccceEEeecCCCCeEEEEECCCCCCCC-------cceeeEEEeCCEEEEEcCcCCCCCccccCCcEEEEECCCCe--EE
Q 002047 306 PLASAYGLAKHRDGRWEWAIAPGVSPSP-------RYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGV--WC 376 (975)
Q Consensus 306 ~l~d~~~~~~~~~~~W~w~~~~g~~P~~-------R~~hs~v~~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~--W~ 376 (975)
...++.++.. +|.-.|......++.. ......++.++.+|+..+.. .+..+|.++++ |+
T Consensus 131 -~g~l~~~d~~-tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g----------~~~~~d~~tg~~~w~ 198 (238)
T PF13360_consen 131 -SGKLVALDPK-TGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG----------RVVAVDLATGEKLWS 198 (238)
T ss_dssp -CSEEEEEETT-TTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS----------SEEEEETTTTEEEEE
T ss_pred -cCcEEEEecC-CCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC----------eEEEEECCCCCEEEE
Confidence 2346666544 4555555544332211 11234445567888876531 25666999997 74
Q ss_pred E
Q 002047 377 D 377 (975)
Q Consensus 377 ~ 377 (975)
.
T Consensus 199 ~ 199 (238)
T PF13360_consen 199 K 199 (238)
T ss_dssp E
T ss_pred e
Confidence 3
No 121
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=96.41 E-value=0.0089 Score=64.30 Aligned_cols=69 Identities=25% Similarity=0.312 Sum_probs=43.8
Q ss_pred CEEEEecCCCC------------HHHHHHHHHHhCCC--CCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCC
Q 002047 699 PIKIFGDLHGQ------------FGDLMRLFDEYGSP--STAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNN 764 (975)
Q Consensus 699 ~i~vvGDiHG~------------~~~L~~ll~~~g~~--~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~ 764 (975)
++.+++|||=. ...|.++++.+... ..+ -+|++||+++.|... ....+..+....+-.
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d------~vi~~GDl~~~~~~~--~~~~~~~~l~~~~~p 72 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPD------LVLVTGDLTDDGSPE--SYERLRELLAALPIP 72 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCC------EEEECccCCCCCCHH--HHHHHHHHHhhcCCC
Confidence 57899999944 34567777765432 222 588899999987532 222222222222456
Q ss_pred EEEEecccccc
Q 002047 765 VHLIRGNHEAA 775 (975)
Q Consensus 765 v~llrGNHE~~ 775 (975)
++.++||||..
T Consensus 73 ~~~v~GNHD~~ 83 (240)
T cd07402 73 VYLLPGNHDDR 83 (240)
T ss_pred EEEeCCCCCCH
Confidence 99999999974
No 122
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=96.24 E-value=0.0082 Score=69.86 Aligned_cols=72 Identities=22% Similarity=0.362 Sum_probs=44.4
Q ss_pred CCEEEEecCC-CC-H------HH----HHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHH----HHHHHhhhcC
Q 002047 698 APIKIFGDLH-GQ-F------GD----LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETI----TLLLALKVEY 761 (975)
Q Consensus 698 ~~i~vvGDiH-G~-~------~~----L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl----~ll~~lk~~~ 761 (975)
++++.++|+| |. + .+ |.++++.+.....+ -+|+.||++|++..+.+.. .++..|+..
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D------~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~- 73 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVD------AIIVAGDIFDTGSPPSYARELYNRFVVNLQQT- 73 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCC------EEEECCccccCCCCcHHHHHHHHHHHHHHHhc-
Confidence 4789999999 42 1 11 23344433222222 6889999999986554432 334445432
Q ss_pred CCCEEEEeccccccc
Q 002047 762 PNNVHLIRGNHEAAD 776 (975)
Q Consensus 762 P~~v~llrGNHE~~~ 776 (975)
+-.|+++.||||...
T Consensus 74 ~~~v~~I~GNHD~~~ 88 (407)
T PRK10966 74 GCQLVVLAGNHDSVA 88 (407)
T ss_pred CCcEEEEcCCCCChh
Confidence 346999999999753
No 123
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.23 E-value=3.3 Score=47.67 Aligned_cols=181 Identities=18% Similarity=0.185 Sum_probs=95.9
Q ss_pred cEEEEECCCCc--EEEecCCCCCCCCccceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCC
Q 002047 151 DVHCYDVLTNK--WSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPR 228 (975)
Q Consensus 151 dv~~yD~~t~~--W~~l~~~g~~P~pR~~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R 228 (975)
.+++||..+++ |+.-... +...+.++.++.+|+.+. ...++.||..+....|+.-. +...
T Consensus 76 ~v~a~d~~tG~~~W~~~~~~------~~~~~p~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~-----~~~~ 137 (377)
T TIGR03300 76 TVVALDAETGKRLWRVDLDE------RLSGGVGADGGLVFVGTE-------KGEVIALDAEDGKELWRAKL-----SSEV 137 (377)
T ss_pred eEEEEEccCCcEeeeecCCC------CcccceEEcCCEEEEEcC-------CCEEEEEECCCCcEeeeecc-----Ccee
Confidence 68999987664 8754322 112233444667776543 24799999987766787543 1111
Q ss_pred cccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCcc
Q 002047 229 YGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLA 308 (975)
Q Consensus 229 ~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~ 308 (975)
....++.++ .+|+..+ -..++.||+++....|+.-..... .........++.++.+|+ |..+ .
T Consensus 138 -~~~p~v~~~-~v~v~~~------~g~l~a~d~~tG~~~W~~~~~~~~--~~~~~~~sp~~~~~~v~~-~~~~------g 200 (377)
T TIGR03300 138 -LSPPLVANG-LVVVRTN------DGRLTALDAATGERLWTYSRVTPA--LTLRGSASPVIADGGVLV-GFAG------G 200 (377)
T ss_pred -ecCCEEECC-EEEEECC------CCeEEEEEcCCCceeeEEccCCCc--eeecCCCCCEEECCEEEE-ECCC------C
Confidence 122233444 6777543 235999999988778986533211 000111222344665544 3322 2
Q ss_pred ceEEeecCCCCeEEEEECCCCCC----CCc---ceeeEEEeCCEEEEEcCcCCCCCccccCCcEEEEECCCC--eEEE
Q 002047 309 SAYGLAKHRDGRWEWAIAPGVSP----SPR---YQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAG--VWCD 377 (975)
Q Consensus 309 d~~~~~~~~~~~W~w~~~~g~~P----~~R---~~hs~v~~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~--~W~~ 377 (975)
.++.++.. +++-.|......+. ..| ...+.++.++.+|+... ...+++||++++ .|..
T Consensus 201 ~v~ald~~-tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~----------~g~l~a~d~~tG~~~W~~ 267 (377)
T TIGR03300 201 KLVALDLQ-TGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY----------QGRVAALDLRSGRVLWKR 267 (377)
T ss_pred EEEEEEcc-CCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc----------CCEEEEEECCCCcEEEee
Confidence 35666543 44444543221110 011 12334556788887542 234899999876 4644
No 124
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=96.21 E-value=0.013 Score=62.54 Aligned_cols=69 Identities=20% Similarity=0.206 Sum_probs=41.4
Q ss_pred CCEEEEecCC-CCHHH----------------HHHHHHHhCCCCCCCCccceeEEEeccccCCCCCh---HHHHHHHHHh
Q 002047 698 APIKIFGDLH-GQFGD----------------LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS---LETITLLLAL 757 (975)
Q Consensus 698 ~~i~vvGDiH-G~~~~----------------L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s---~evl~ll~~l 757 (975)
.++.||.|+| |--.. |.++.+.......+ .+|++||+++..... -++..+|..+
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d------~vIi~GDl~h~~~~~~~~~~~~~~l~~~ 88 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIE------ALIINGDLKHEFKKGLEWRFIREFIEVT 88 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCC------EEEEcCccccccCChHHHHHHHHHHHhc
Confidence 6789999999 53222 22232322221122 799999999765542 2223333332
Q ss_pred hhcCCCCEEEEeccccccc
Q 002047 758 KVEYPNNVHLIRGNHEAAD 776 (975)
Q Consensus 758 k~~~P~~v~llrGNHE~~~ 776 (975)
...+++++||||...
T Consensus 89 ----~~~v~~V~GNHD~~~ 103 (225)
T TIGR00024 89 ----FRDLILIRGNHDALI 103 (225)
T ss_pred ----CCcEEEECCCCCCcc
Confidence 247999999999743
No 125
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=96.18 E-value=0.007 Score=60.89 Aligned_cols=44 Identities=23% Similarity=0.307 Sum_probs=27.8
Q ss_pred eEEEeccccCCCCCh--H---HHHHHHHHhhhcC-CCCEEEEeccccccc
Q 002047 733 DYLFLGDYVDRGQHS--L---ETITLLLALKVEY-PNNVHLIRGNHEAAD 776 (975)
Q Consensus 733 ~~vfLGDyVDRG~~s--~---evl~ll~~lk~~~-P~~v~llrGNHE~~~ 776 (975)
.+||+||++|.+... . +.+..+.++.... ...++++.||||...
T Consensus 41 ~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~~ 90 (156)
T cd08165 41 VVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIGF 90 (156)
T ss_pred EEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcCC
Confidence 689999999987642 2 2222233322222 246999999999843
No 126
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=96.17 E-value=0.012 Score=64.83 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=45.6
Q ss_pred CCEEEEecCC-C-----------CHHHHHHHHHHhCCC-CCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCC
Q 002047 698 APIKIFGDLH-G-----------QFGDLMRLFDEYGSP-STAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNN 764 (975)
Q Consensus 698 ~~i~vvGDiH-G-----------~~~~L~~ll~~~g~~-~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~ 764 (975)
.+++.|+|+| . ....|.++++.+... +..+ -+|+.||++|.|. .+-+..+++.-...+..
T Consensus 15 ~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D-----~vvitGDl~~~~~--~~~~~~~~~~l~~l~~P 87 (275)
T PRK11148 15 VRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFD-----LIVATGDLAQDHS--SEAYQHFAEGIAPLRKP 87 (275)
T ss_pred EEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCC-----EEEECCCCCCCCC--HHHHHHHHHHHhhcCCc
Confidence 5689999999 1 245677777765321 1111 5888999999874 23333333332334457
Q ss_pred EEEEecccccc
Q 002047 765 VHLIRGNHEAA 775 (975)
Q Consensus 765 v~llrGNHE~~ 775 (975)
++++.||||..
T Consensus 88 v~~v~GNHD~~ 98 (275)
T PRK11148 88 CVWLPGNHDFQ 98 (275)
T ss_pred EEEeCCCCCCh
Confidence 99999999973
No 127
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=96.15 E-value=0.02 Score=62.04 Aligned_cols=72 Identities=19% Similarity=0.230 Sum_probs=38.8
Q ss_pred EEEecCC--CCH---HHHHHHHHHhCCCCC-CCCccceeEEEeccccCCCCC------------h----HHHHHHHHHhh
Q 002047 701 KIFGDLH--GQF---GDLMRLFDEYGSPST-AGDIAYIDYLFLGDYVDRGQH------------S----LETITLLLALK 758 (975)
Q Consensus 701 ~vvGDiH--G~~---~~L~~ll~~~g~~~~-~~~~~~~~~vfLGDyVDRG~~------------s----~evl~ll~~lk 758 (975)
++|+|+| +.. ..+..+++.+.-... ... ...+|++||++|+... . .++..+|.+|.
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~--~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 79 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASR--VKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVP 79 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCcccccC--ccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcc
Confidence 6899999 432 222344443321111 000 0178899999997310 0 12333444443
Q ss_pred hcCCCCEEEEeccccccc
Q 002047 759 VEYPNNVHLIRGNHEAAD 776 (975)
Q Consensus 759 ~~~P~~v~llrGNHE~~~ 776 (975)
. .-.|+++.||||...
T Consensus 80 ~--~~~v~~ipGNHD~~~ 95 (243)
T cd07386 80 S--HIKIIIIPGNHDAVR 95 (243)
T ss_pred c--CCeEEEeCCCCCccc
Confidence 2 246999999999853
No 128
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=96.05 E-value=0.038 Score=61.41 Aligned_cols=35 Identities=9% Similarity=0.113 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHcCCeEEEEeccccccceEEecCCe
Q 002047 883 GPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGH 917 (975)
Q Consensus 883 g~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~ 917 (975)
....+.+.++++++++++-||.-..+-+....+++
T Consensus 181 ~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~ 215 (294)
T cd00839 181 MRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGT 215 (294)
T ss_pred HHHHHHHHHHHhCCCEEEEccceeeEeechhhCCE
Confidence 34567778999999999999987654444333443
No 129
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=95.97 E-value=0.00086 Score=74.14 Aligned_cols=207 Identities=9% Similarity=-0.118 Sum_probs=139.3
Q ss_pred eeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccccchhhhcCChHHHHHHhCCcccchhhhhhhccccccc
Q 002047 732 IDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLP 811 (975)
Q Consensus 732 ~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~~LP 811 (975)
...|+|+++++++.+.++.+-+.+..+..|-.+....++||+. .++++.++.-.....+...+++..++.+..++
T Consensus 49 latVdvdp~s~t~c~vI~r~~~~~~gdelhhsgwn~~ssc~~~-----~~~~R~~LVlp~l~S~riyvid~~~ep~~~~l 123 (476)
T KOG0918|consen 49 LATVDVDPSSPTYCQVIHRLPMPYLGDELHHSGWNSCSSCHGD-----SSFKRRYLVLPSLNSGRIYVIDVKTEPRKPSL 123 (476)
T ss_pred eeEEecCCCCCcceeeEEEeccCcccchhcccchhhhhhhccC-----cchhhhheeecccccCceEEEEeccCcCccce
Confidence 3789999999999999999999999999988899999999944 45666666665566667889999999999999
Q ss_pred eEEEEcceEEEecCCccCcccCHhhhhhccCCcccCCCCcceeccccCCCCCCCC--CCCcccCCCCCceeeeCHH--HH
Q 002047 812 LAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDS--VEGLRPNARGPGLVTFGPD--RV 887 (975)
Q Consensus 812 laa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dllWsdP~~~~~--~~~~~~n~rg~~~~~fg~~--~~ 887 (975)
..++.. +++|.||++.|...+...+.++.-...-+.. -..+. |-++.+.+. ...|. .++.. ..||-| ..
T Consensus 124 ~k~i~~-~il~~~~l~~Pht~hcla~g~v~vs~lGd~~--gn~kg-~f~llD~~~~~k~tw~--~~~~~-p~~gyDfwyq 196 (476)
T KOG0918|consen 124 EKTIDP-DILEKTGLACPHTSHCLASGNVMVSCLGDAE--GNAKG-GFLLLDSDFNEKGTWE--KPGHS-PLFGYDFWYQ 196 (476)
T ss_pred eeeech-hhHhhcCCcCCcccccccCCCeeEEeecccc--cCCcC-CeEEecCccceecccc--cCCCc-cccccceeec
Confidence 997776 9999999999987665554432111100110 11111 333332110 11121 11111 223322 23
Q ss_pred HHHHHHcCCeEEEEeccccccceEEecCCeEEEEeccccccCCCCCcEEEEEEcCC--ceEEeEEec
Q 002047 888 MEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRD--LVVVPKLIH 952 (975)
Q Consensus 888 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~ga~l~i~~~--~~~~~~~~~ 952 (975)
-.++.....+.+.+.|...-.++..+.++ ++.|+..-|.-...+.+..+-++.+ +.+..+.+|
T Consensus 197 pr~~~mIstewgap~~~~~gf~~~~v~d~--lyg~~lhvy~w~~~~~~QtidL~~~gllpleiRfLh 261 (476)
T KOG0918|consen 197 PRHNVMISTEWGAPNALRKGFNPADVEDG--LYGSHLHVYQWSPGELKQTIDLGDTGLLPLEIRFLH 261 (476)
T ss_pred cccceEEeecccCchhhhcCCChhHhhcc--ceeeeeEEEecCCccceeEEecCCCCcceEEeeecc
Confidence 34667777888888888655555556666 7889999998888889999988774 334445554
No 130
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=95.89 E-value=0.022 Score=59.52 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=29.5
Q ss_pred eEEEeccccCCCCC---hHHHHHHHHHhhhcCCCCEEEEecccc
Q 002047 733 DYLFLGDYVDRGQH---SLETITLLLALKVEYPNNVHLIRGNHE 773 (975)
Q Consensus 733 ~~vfLGDyVDRG~~---s~evl~ll~~lk~~~P~~v~llrGNHE 773 (975)
.+|++||+++.+.. +.+.+..++.......-.++++.||||
T Consensus 44 ~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD 87 (199)
T cd07383 44 LVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWAATFGNHD 87 (199)
T ss_pred EEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEEEECccCC
Confidence 68999999997765 355565555443333456899999999
No 131
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=95.72 E-value=1.1 Score=47.06 Aligned_cols=206 Identities=19% Similarity=0.226 Sum_probs=115.3
Q ss_pred cCCEEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEecccc--CCCCChHHHHHH-HHHhhhcCCCCEEEEecccc
Q 002047 697 KAPIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYV--DRGQHSLETITL-LLALKVEYPNNVHLIRGNHE 773 (975)
Q Consensus 697 ~~~i~vvGDiHG~~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyV--DRG~~s~evl~l-l~~lk~~~P~~v~llrGNHE 773 (975)
.+++..+.||||.+..|.++++.......+ -+|+.||+. ++|+.-.-..+. +..++. +--.|+.+.||.|
T Consensus 3 ~mkil~vtDlHg~~~~~~k~~~~~~~~~~D------~lviaGDlt~~~~~~~~~~~~~~~~e~l~~-~~~~v~avpGNcD 75 (226)
T COG2129 3 KMKILAVTDLHGSEDSLKKLLNAAADIRAD------LLVIAGDLTYFHFGPKEVAEELNKLEALKE-LGIPVLAVPGNCD 75 (226)
T ss_pred cceEEEEeccccchHHHHHHHHHHhhccCC------EEEEecceehhhcCchHHHHhhhHHHHHHh-cCCeEEEEcCCCC
Confidence 468999999999999999999887644333 678899999 777643222211 344432 2357999999988
Q ss_pred ccchhhhcCChHHHHHHhCCcccchhhhhhhccccccceEEEEcceEEEecCCccCcc-c-----CHhhhhhccCCcccC
Q 002047 774 AADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRSI-N-----HVEQIENLQRPITME 847 (975)
Q Consensus 774 ~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHgGi~~~~-~-----~~~~i~~i~rp~~~~ 847 (975)
...+-.. .+..+. .+.. -...+++--||-=||+.+.- . +-++|....+-....
T Consensus 76 ~~~v~~~-------l~~~~~----~v~~----------~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~ 134 (226)
T COG2129 76 PPEVIDV-------LKNAGV----NVHG----------RVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKK 134 (226)
T ss_pred hHHHHHH-------HHhccc----cccc----------ceEEecCcEEEEecccCCCCCCCccccCHHHHHHHHHHHHhc
Confidence 8644221 111211 1111 11234444455457776542 1 234454432221111
Q ss_pred CCCcceeccccCCCCCCCCCCCcccCCCCCceeeeCHHHHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEeccccc
Q 002047 848 AGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNY 927 (975)
Q Consensus 848 ~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa~~y 927 (975)
..+ ...=++---|.-+.... ++-| ...-|..+++++++..+-.+.|.||=-...|++.- |. ||+-.|.-
T Consensus 135 ~~~-~~~Il~~HaPP~gt~~d----~~~g--~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d~i--G~--TivVNPG~ 203 (226)
T COG2129 135 ADN-PVNILLTHAPPYGTLLD----TPSG--YVHVGSKAVRKLIEEFQPLLGLHGHIHESRGIDKI--GN--TIVVNPGP 203 (226)
T ss_pred ccC-cceEEEecCCCCCcccc----CCCC--ccccchHHHHHHHHHhCCceEEEeeeccccccccc--CC--eEEECCCC
Confidence 101 00011222222221111 2333 12348999999999999999999986666787653 22 55555544
Q ss_pred cCCCCCcEEEEEEcCC
Q 002047 928 CGTANNAGAILVLGRD 943 (975)
Q Consensus 928 ~~~~~n~ga~l~i~~~ 943 (975)
.+ .-.-|++.+++.
T Consensus 204 ~~--~g~yA~i~l~~~ 217 (226)
T COG2129 204 LG--EGRYALIELEKE 217 (226)
T ss_pred cc--CceEEEEEecCc
Confidence 22 345688888777
No 132
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=95.71 E-value=0.024 Score=61.00 Aligned_cols=44 Identities=9% Similarity=0.019 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHcCCeEEEEeccccccceE---EecCCeEEEEecccccc
Q 002047 883 GPDRVMEFCNNNDLQLIVRAHECVMDGFE---RFAQGHLITLFSATNYC 928 (975)
Q Consensus 883 g~~~~~~fl~~~~l~~iiR~H~~~~~G~~---~~~~~~~iTvfSa~~y~ 928 (975)
+...+.+.+++.++++++-||.-...-.. ...+| |+.+++|.=|
T Consensus 181 ~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~g--i~~~~~~~~~ 227 (232)
T cd07393 181 DDSPISKLIEEYGVDICVYGHLHGVGRDRAINGERGG--IRYQLVSADY 227 (232)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCCcccccccceECC--EEEEEEcchh
Confidence 45677888899999999999986533222 12344 4566666544
No 133
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=95.63 E-value=0.028 Score=65.06 Aligned_cols=73 Identities=18% Similarity=0.167 Sum_probs=53.1
Q ss_pred CCEEEEecCCCC------------HHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhc-----
Q 002047 698 APIKIFGDLHGQ------------FGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVE----- 760 (975)
Q Consensus 698 ~~i~vvGDiHG~------------~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~----- 760 (975)
++|.+++|+|-- +..|.++++.+.....+ -+|+.||++|+..-|.+++..++.+-.+
T Consensus 4 mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD------~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~ 77 (405)
T TIGR00583 4 IRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVD------MILLGGDLFHENKPSRKSLYQVLRSLRLYCLGD 77 (405)
T ss_pred eEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCC------EEEECCccCCCCCCCHHHHHHHHHHHHHhhccC
Confidence 578999999932 45677777777433333 5888999999999998888655544332
Q ss_pred -------------------------------CCCCEEEEeccccccc
Q 002047 761 -------------------------------YPNNVHLIRGNHEAAD 776 (975)
Q Consensus 761 -------------------------------~P~~v~llrGNHE~~~ 776 (975)
..--||+|-||||...
T Consensus 78 ~p~~~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~ 124 (405)
T TIGR00583 78 KPCELEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPS 124 (405)
T ss_pred CccchhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCcc
Confidence 1226999999999964
No 134
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.44 E-value=3.5 Score=47.49 Aligned_cols=177 Identities=20% Similarity=0.217 Sum_probs=95.8
Q ss_pred CcEEEEECCCCc--EEEecCCCCCCCCccceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCC
Q 002047 150 ADVHCYDVLTNK--WSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 227 (975)
Q Consensus 150 ~dv~~yD~~t~~--W~~l~~~g~~P~pR~~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~ 227 (975)
..++.+|+.+++ |+.-.... ....+...+.++.++.+| +|.. ...++.+|+.+....|+.-. ..+..
T Consensus 155 g~l~a~d~~tG~~~W~~~~~~~-~~~~~~~~sp~~~~~~v~-~~~~------~g~v~ald~~tG~~~W~~~~---~~~~g 223 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSRVTP-ALTLRGSASPVIADGGVL-VGFA------GGKLVALDLQTGQPLWEQRV---ALPKG 223 (377)
T ss_pred CeEEEEEcCCCceeeEEccCCC-ceeecCCCCCEEECCEEE-EECC------CCEEEEEEccCCCEeeeecc---ccCCC
Confidence 468999998664 87643321 001122233455566554 4432 23688999987765786532 11111
Q ss_pred -----C---cccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecC
Q 002047 228 -----R---YGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGG 299 (975)
Q Consensus 228 -----R---~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG 299 (975)
| ...+.++.++ .+|+... + ..+++||+.+....|..-... ....++.++++|+...
T Consensus 224 ~~~~~~~~~~~~~p~~~~~-~vy~~~~-~-----g~l~a~d~~tG~~~W~~~~~~---------~~~p~~~~~~vyv~~~ 287 (377)
T TIGR03300 224 RTELERLVDVDGDPVVDGG-QVYAVSY-Q-----GRVAALDLRSGRVLWKRDASS---------YQGPAVDDNRLYVTDA 287 (377)
T ss_pred CCchhhhhccCCccEEECC-EEEEEEc-C-----CEEEEEECCCCcEEEeeccCC---------ccCceEeCCEEEEECC
Confidence 1 1122333444 7777543 2 369999998887789764211 1223456888888642
Q ss_pred CCCCCCCccceEEeecCCCCeEEEEECCCCCCCCcceeeEEEeCCEEEEEcCcCCCCCccccCCcEEEEECCCCe
Q 002047 300 RDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGV 374 (975)
Q Consensus 300 ~~~~~~~l~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v~~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~ 374 (975)
-..++.++.. +++-.|.... ...+...+.++.+++||+. .. ...++++|..+++
T Consensus 288 -------~G~l~~~d~~-tG~~~W~~~~---~~~~~~ssp~i~g~~l~~~-~~---------~G~l~~~d~~tG~ 341 (377)
T TIGR03300 288 -------DGVVVALDRR-SGSELWKNDE---LKYRQLTAPAVVGGYLVVG-DF---------EGYLHWLSREDGS 341 (377)
T ss_pred -------CCeEEEEECC-CCcEEEcccc---ccCCccccCEEECCEEEEE-eC---------CCEEEEEECCCCC
Confidence 1346666554 3333444321 0122233445578888774 22 2348899988763
No 135
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=95.44 E-value=0.36 Score=52.68 Aligned_cols=30 Identities=10% Similarity=0.035 Sum_probs=24.1
Q ss_pred eCHHHHHHHHHHcCCeEEEEeccccccceEEe
Q 002047 882 FGPDRVMEFCNNNDLQLIVRAHECVMDGFERF 913 (975)
Q Consensus 882 fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~ 913 (975)
-.++..++.|+..+-.+|.-||+- ++.+..
T Consensus 203 l~~~~s~~il~~~~P~~vfsGhdH--~~C~~~ 232 (257)
T cd08163 203 LEPSLSEVILKAVQPVIAFSGDDH--DYCEVV 232 (257)
T ss_pred cCHHHHHHHHHhhCCcEEEecCCC--ccceeE
Confidence 478899999999999999999984 444443
No 136
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=95.33 E-value=1.4 Score=47.05 Aligned_cols=164 Identities=12% Similarity=0.117 Sum_probs=90.5
Q ss_pred ccEEEEEcCCCCCcEEEEEecCCCCCC---Cccc-EEEEe----CCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEcc
Q 002047 201 EDLHVLDLTQQRPRWHRVVVQGPGPGP---RYGH-VMALV----GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLE 272 (975)
Q Consensus 201 ~dv~~yD~~t~~~~W~~v~~~g~~P~~---R~~h-~~~~~----~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~ 272 (975)
..++++|+.|.. |..++. .+.+ ...+ ...-+ +.=+++.+....+......+++|++.++ .|+.+.
T Consensus 14 ~~~~V~NP~T~~--~~~LP~---~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~--~Wr~~~ 86 (230)
T TIGR01640 14 KRLVVWNPSTGQ--SRWLPT---PKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSN--SWRTIE 86 (230)
T ss_pred CcEEEECCCCCC--EEecCC---CCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCC--Cccccc
Confidence 468999999974 988862 2221 1111 11111 1114555543322223457899999999 999987
Q ss_pred CCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCccceEEeecCCCCeEE-EEECCCCCCCCcceeeEEEeCCEEEEEcC
Q 002047 273 PEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWE-WAIAPGVSPSPRYQHAAVFVNARLHVSGG 351 (975)
Q Consensus 273 ~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~d~~~~~~~~~~~W~-w~~~~g~~P~~R~~hs~v~~~~~L~V~GG 351 (975)
.... ....... .+..+|.||-+.-..... ....+..||..+. +|. +...+............+.++|+|.++..
T Consensus 87 ~~~~--~~~~~~~-~v~~~G~lyw~~~~~~~~-~~~~IvsFDl~~E-~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~ 161 (230)
T TIGR01640 87 CSPP--HHPLKSR-GVCINGVLYYLAYTLKTN-PDYFIVSFDVSSE-RFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQ 161 (230)
T ss_pred cCCC--CccccCC-eEEECCEEEEEEEECCCC-CcEEEEEEEcccc-eEeeeeecCccccccccceEEEEECCEEEEEEe
Confidence 4321 1111222 456688888776432211 1125777766654 555 34333221111223457777899888765
Q ss_pred cCCCCCccccCCcEEEEE-CCCCeEEEcccC
Q 002047 352 ALGGGRMVEDSSSVAVLD-TAAGVWCDTKSV 381 (975)
Q Consensus 352 ~~~~~~~~~~~~dv~~yD-~~t~~W~~v~~~ 381 (975)
..... .-+||+++ -...+|+++-.+
T Consensus 162 ~~~~~-----~~~IWvl~d~~~~~W~k~~~i 187 (230)
T TIGR01640 162 KKDTN-----NFDLWVLNDAGKQEWSKLFTV 187 (230)
T ss_pred cCCCC-----cEEEEEECCCCCCceeEEEEE
Confidence 32211 25799986 446679987665
No 137
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=95.28 E-value=0.05 Score=59.42 Aligned_cols=27 Identities=11% Similarity=0.233 Sum_probs=22.2
Q ss_pred HHHHHHHcCCeEEEEeccccccceEEe
Q 002047 887 VMEFCNNNDLQLIVRAHECVMDGFERF 913 (975)
Q Consensus 887 ~~~fl~~~~l~~iiR~H~~~~~G~~~~ 913 (975)
+.+.+++.++++++-||.=..++.+..
T Consensus 190 ~~~ll~~~~v~~vl~GH~H~~~~~~p~ 216 (256)
T cd07401 190 FKDLLKKYNVTAYLCGHLHPLGGLEPV 216 (256)
T ss_pred HHHHHHhcCCcEEEeCCccCCCcceee
Confidence 777889999999999999887774544
No 138
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=95.21 E-value=0.052 Score=56.21 Aligned_cols=65 Identities=18% Similarity=0.104 Sum_probs=40.7
Q ss_pred cCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCCh-HHHHHHHHHhhhcC---------------------C
Q 002047 705 DLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS-LETITLLLALKVEY---------------------P 762 (975)
Q Consensus 705 DiHG~~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s-~evl~ll~~lk~~~---------------------P 762 (975)
|++|+=.=|.++++.+-.....+ .++||||++|.|--+ -|--..+..++..+ .
T Consensus 24 d~~~~D~YL~~~~~~~~~~l~Pd-----~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~ 98 (193)
T cd08164 24 DLFGNDYFLGHIVSMMQFWLKPD-----AVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGK 98 (193)
T ss_pred hhhhhHHHHHHHHHHHHHhcCCC-----EEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCC
Confidence 44566666777777654322221 688999999998533 23334444444433 1
Q ss_pred CCEEEEeccccc
Q 002047 763 NNVHLIRGNHEA 774 (975)
Q Consensus 763 ~~v~llrGNHE~ 774 (975)
-.+++|.||||.
T Consensus 99 i~~i~V~GNHDI 110 (193)
T cd08164 99 TPLINIAGNHDV 110 (193)
T ss_pred ceEEEECCcccC
Confidence 357899999998
No 139
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.14 E-value=0.073 Score=56.23 Aligned_cols=198 Identities=19% Similarity=0.221 Sum_probs=99.9
Q ss_pred EEecCCCC------HHHHHHHHHHhCCCCCCCCccceeEEEeccccC--CCCC-----hHHHHHHHHHhhhcCCCCEEEE
Q 002047 702 IFGDLHGQ------FGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVD--RGQH-----SLETITLLLALKVEYPNNVHLI 768 (975)
Q Consensus 702 vvGDiHG~------~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVD--RG~~-----s~evl~ll~~lk~~~P~~v~ll 768 (975)
+|+|+|=. -+-|+++|+.... ..+ .+++|||++| .|.. --+|...|..+. +-..+|+.+
T Consensus 2 FISDlHL~~~~p~~t~~fl~Fl~~~a~-~ad------~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a-~~G~~v~~i 73 (237)
T COG2908 2 FISDLHLGPKRPALTAFFLDFLREEAA-QAD------ALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLA-RKGTRVYYI 73 (237)
T ss_pred eeeccccCCCCcHHHHHHHHHHHhccc-cCc------EEEEechhhhhhhcCCcccHHHHHHHHHHHHHH-hcCCeEEEe
Confidence 68898844 2334555555432 222 7899999998 3433 234444554443 334689999
Q ss_pred eccccccchhhhcCChHHHHHHhCCcccchhhhhhhccccccceE---EEEcceEEEecCCccCcccC------------
Q 002047 769 RGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLA---ALIEKKIICMHGGIGRSINH------------ 833 (975)
Q Consensus 769 rGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~~LPla---a~i~~~il~vHgGi~~~~~~------------ 833 (975)
.||||. .+...+ ....|. +.-+|-. ..-+++++++||-.--....
T Consensus 74 ~GN~Df-ll~~~f------~~~~g~-------------~~l~~~~~~~~l~g~~~Ll~HGD~f~t~~~~y~~~r~~~~~~ 133 (237)
T COG2908 74 HGNHDF-LLGKRF------AQEAGG-------------MTLLPDPIVLDLYGKRILLAHGDTFCTDDRAYQWFRYKVHWA 133 (237)
T ss_pred cCchHH-HHHHHH------HhhcCc-------------eEEcCcceeeeecCcEEEEEeCCcccchHHHHHHHHHHcccH
Confidence 999995 332222 111221 2233333 23468999999966332100
Q ss_pred HhhhhhccCCcccCCCCcceeccccCCCCCCCCCCCcccCCCCCc--eeeeCHHHHHHHHHHcCCeEEEEeccccccceE
Q 002047 834 VEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPG--LVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFE 911 (975)
Q Consensus 834 ~~~i~~i~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~--~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~ 911 (975)
..++.-+.+|+.... .+..=+|+.-. |........ .....+.++.+-+++++++.+|-||.-.+..-.
T Consensus 134 ~~~~lflnl~l~~R~---ri~~k~r~~s~-------~~k~~~~~~~~i~d~~~~~v~~~~~~~~vd~vI~GH~Hr~ai~~ 203 (237)
T COG2908 134 WLQLLFLNLPLRVRR---RIAYKIRSLSS-------WAKKKVKKAVNIMDVNPAAVADEARRHGVDGVIHGHTHRPAIHN 203 (237)
T ss_pred HHHHHHHHhHHHHHH---HHHHHHHHhhH-------HhHHhhhhHHHHHHhhHHHHHHHHHHcCCCEEEecCcccHhhcc
Confidence 011111222222000 11111343331 111100000 122466778888999999999999987765544
Q ss_pred EecCCeEEEEeccccccCCCCCcEEEEEEcCCce
Q 002047 912 RFAQGHLITLFSATNYCGTANNAGAILVLGRDLV 945 (975)
Q Consensus 912 ~~~~~~~iTvfSa~~y~~~~~n~ga~l~i~~~~~ 945 (975)
.. +...-+ +|.--..++++.++.+..
T Consensus 204 i~--~~~yi~------lGdW~~~~s~~~v~~~~~ 229 (237)
T COG2908 204 IP--GITYIN------LGDWVSEGSILEVDDGGL 229 (237)
T ss_pred CC--CceEEe------cCcchhcceEEEEecCcE
Confidence 32 211111 111224578888877653
No 140
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=94.84 E-value=0.043 Score=56.89 Aligned_cols=43 Identities=19% Similarity=0.364 Sum_probs=32.3
Q ss_pred eEEEeccccCCCCCh--HHHHHHHHHhhhcCC----CCEEEEecccccc
Q 002047 733 DYLFLGDYVDRGQHS--LETITLLLALKVEYP----NNVHLIRGNHEAA 775 (975)
Q Consensus 733 ~~vfLGDyVDRG~~s--~evl~ll~~lk~~~P----~~v~llrGNHE~~ 775 (975)
-+|||||++|.|+.. .|.+..+..++..|. -.++.|.||||--
T Consensus 45 ~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG 93 (195)
T cd08166 45 IVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIG 93 (195)
T ss_pred EEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcC
Confidence 589999999999853 456676666664433 3688999999973
No 141
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=94.54 E-value=1.9 Score=47.57 Aligned_cols=113 Identities=14% Similarity=0.219 Sum_probs=72.5
Q ss_pred cCcEEEEECCCCcEEEecCCCCCCCCccceEEEEe-CCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEec--CCCC
Q 002047 149 TADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAV-GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQ--GPGP 225 (975)
Q Consensus 149 ~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~-~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~--g~~P 225 (975)
-..+..||..+.+|..+... -..-. +++... +++||+.|-..-.+.....+-.||..+.+ |+.+... ..+|
T Consensus 15 C~~lC~yd~~~~qW~~~g~~---i~G~V-~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~--w~~~~~~~s~~ip 88 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNG---ISGTV-TDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT--WSSLGGGSSNSIP 88 (281)
T ss_pred CCEEEEEECCCCEeecCCCC---ceEEE-EEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe--eeecCCcccccCC
Confidence 45788899999999998653 12222 233333 56888888665444345678899999986 9988742 2456
Q ss_pred CCCcccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccC
Q 002047 226 GPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEP 273 (975)
Q Consensus 226 ~~R~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~ 273 (975)
.+....+....+...+|+.|... .-..-+.+||= . +|..+..
T Consensus 89 gpv~a~~~~~~d~~~~~~aG~~~--~g~~~l~~~dG--s--~W~~i~~ 130 (281)
T PF12768_consen 89 GPVTALTFISNDGSNFWVAGRSA--NGSTFLMKYDG--S--SWSSIGS 130 (281)
T ss_pred CcEEEEEeeccCCceEEEeceec--CCCceEEEEcC--C--ceEeccc
Confidence 66543333333444688887752 22345677755 5 8999977
No 142
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.46 E-value=8.2 Score=46.32 Aligned_cols=113 Identities=15% Similarity=0.159 Sum_probs=61.2
Q ss_pred cEEEEECCCCc--EEEecCCC-CCCCCc-cceEEEEeC-CEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCC
Q 002047 151 DVHCYDVLTNK--WSRITPFG-EPPTPR-AAHVATAVG-TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGP 225 (975)
Q Consensus 151 dv~~yD~~t~~--W~~l~~~g-~~P~pR-~~hsa~~~~-~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P 225 (975)
.++.+|..+.+ |+.-.... ....+. .....++.+ ++||+... ...++.+|..+....|+.-......+
T Consensus 72 ~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-------~g~v~AlD~~TG~~~W~~~~~~~~~~ 144 (488)
T cd00216 72 ALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-------DGRLVALDAETGKQVWKFGNNDQVPP 144 (488)
T ss_pred cEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-------CCeEEEEECCCCCEeeeecCCCCcCc
Confidence 67889988654 87643321 001111 122234445 77776432 35799999988766788643110000
Q ss_pred CCCcccEEEEeCCcEEEEEcCCCCC----CCCCcEEEEECCCCCcEEEEcc
Q 002047 226 GPRYGHVMALVGQRYLMAIGGNDGK----RPLADVWALDTAAKPYEWRKLE 272 (975)
Q Consensus 226 ~~R~~h~~~~~~~~~lyV~GG~~g~----~~~ndv~~yDl~s~~~~W~~v~ 272 (975)
.-....+.++.++ .+|+ |..++. .....+++||..+....|+.-.
T Consensus 145 ~~~i~ssP~v~~~-~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 145 GYTMTGAPTIVKK-LVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred ceEecCCCEEECC-EEEE-eccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 0011233345554 5554 433221 2346799999999888897643
No 143
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=94.45 E-value=0.072 Score=54.44 Aligned_cols=44 Identities=27% Similarity=0.314 Sum_probs=28.3
Q ss_pred eEEEeccccCCCCCh--HH---HHHHHHHhhhcC-----CCCEEEEeccccccc
Q 002047 733 DYLFLGDYVDRGQHS--LE---TITLLLALKVEY-----PNNVHLIRGNHEAAD 776 (975)
Q Consensus 733 ~~vfLGDyVDRG~~s--~e---vl~ll~~lk~~~-----P~~v~llrGNHE~~~ 776 (975)
.+||+||++|.+... .+ .+..+..+.... ...+++|.||||...
T Consensus 48 ~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~ 101 (171)
T cd07384 48 VVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGY 101 (171)
T ss_pred EEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccCC
Confidence 689999999988743 22 233332322111 346999999999853
No 144
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=94.41 E-value=0.13 Score=54.70 Aligned_cols=77 Identities=25% Similarity=0.295 Sum_probs=46.3
Q ss_pred CCeeee-cCCEEEEecCCCCHHHHH----------------HHHHHh--CCCCCCCCccceeEEEeccccCCCCC-----
Q 002047 691 PSVLQL-KAPIKIFGDLHGQFGDLM----------------RLFDEY--GSPSTAGDIAYIDYLFLGDYVDRGQH----- 746 (975)
Q Consensus 691 p~~l~l-~~~i~vvGDiHG~~~~L~----------------~ll~~~--g~~~~~~~~~~~~~vfLGDyVDRG~~----- 746 (975)
...+.+ ..++.||.|+|=-|+.-+ +.++.+ .+.+ + ++|+|||+-.-.+.
T Consensus 12 ~~~~~l~~~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p-~------~lIilGD~KH~~~~~~~~e 84 (235)
T COG1407 12 LGVLYLPLGRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGP-K------RLIILGDLKHEFGKSLRQE 84 (235)
T ss_pred cceeEeccCcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCC-C------EEEEcCccccccCcccccc
Confidence 334444 478999999995544332 222211 1111 1 79999999864332
Q ss_pred hHHHHHHHHHhhhcCCCCEEEEeccccccch
Q 002047 747 SLETITLLLALKVEYPNNVHLIRGNHEAADI 777 (975)
Q Consensus 747 s~evl~ll~~lk~~~P~~v~llrGNHE~~~~ 777 (975)
..|+..++-.++.. .++++|||||...-
T Consensus 85 ~~~~~~f~~~~~~~---evi~i~GNHD~~i~ 112 (235)
T COG1407 85 KEEVREFLELLDER---EVIIIRGNHDNGIE 112 (235)
T ss_pred HHHHHHHHHHhccC---cEEEEeccCCCccc
Confidence 34555555444433 59999999998543
No 145
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.15 E-value=17 Score=43.65 Aligned_cols=202 Identities=18% Similarity=0.204 Sum_probs=98.6
Q ss_pred cCcEEEEECCCCc--EEEecCCCCCCCCc---------------cceEEEEe--CCEEEEEeccCC-----------CCC
Q 002047 149 TADVHCYDVLTNK--WSRITPFGEPPTPR---------------AAHVATAV--GTMVVIQGGIGP-----------AGL 198 (975)
Q Consensus 149 ~~dv~~yD~~t~~--W~~l~~~g~~P~pR---------------~~hsa~~~--~~~iyv~GG~~~-----------~~~ 198 (975)
...++.||..+++ |+.-.....+-..+ ...+.++. ++.||+..|... ...
T Consensus 174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~ 253 (488)
T cd00216 174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNL 253 (488)
T ss_pred CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCC
Confidence 4578999998764 87643221110111 11122222 356666644321 122
Q ss_pred ccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEE-----eCCc--EEEEEcCCCCCCCCCcEEEEECCCCCcEEEEc
Q 002047 199 SAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMAL-----VGQR--YLMAIGGNDGKRPLADVWALDTAAKPYEWRKL 271 (975)
Q Consensus 199 ~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~-----~~~~--~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v 271 (975)
..+.++.+|..+....|+.-....+...-+.....++ +++. .++++|..++ .++.||..+....|+.-
T Consensus 254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G-----~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNG-----FFYVLDRTTGKLISARP 328 (488)
T ss_pred ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCc-----eEEEEECCCCcEeeEeE
Confidence 3457999999998778986431111110011111111 1221 2444454443 59999999998889764
Q ss_pred cCCCCCCCCcceeEEEEEeCCeEEEecCCCCC-----------CCCccceEEeecCCCCeEEEEECCCCCC------CCc
Q 002047 272 EPEGEGPPPCMYATASARSDGLLLLCGGRDAS-----------SVPLASAYGLAKHRDGRWEWAIAPGVSP------SPR 334 (975)
Q Consensus 272 ~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~-----------~~~l~d~~~~~~~~~~~W~w~~~~g~~P------~~R 334 (975)
..... .....+.+|+-...... ......++.++. .+++-.|....+... .+.
T Consensus 329 ~~~~~----------~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~-~tG~~~W~~~~~~~~~~~~~g~~~ 397 (488)
T cd00216 329 EVEQP----------MAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDP-KTGKVVWEKREGTIRDSWNIGFPH 397 (488)
T ss_pred eeccc----------cccCCceEEEccccccccCcccccCCCCCCCceEEEEEeC-CCCcEeeEeeCCccccccccCCcc
Confidence 32100 11122566663321100 011234566644 355556665543110 122
Q ss_pred ceeeEEEeCCEEEEEcCcCCCCCccccCCcEEEEECCCC--eEE
Q 002047 335 YQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAG--VWC 376 (975)
Q Consensus 335 ~~hs~v~~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~--~W~ 376 (975)
.....++.++.||+ |..+ ..+++||.+|+ .|+
T Consensus 398 ~~~~~~~~g~~v~~-g~~d---------G~l~ald~~tG~~lW~ 431 (488)
T cd00216 398 WGGSLATAGNLVFA-GAAD---------GYFRAFDATTGKELWK 431 (488)
T ss_pred cCcceEecCCeEEE-ECCC---------CeEEEEECCCCceeeE
Confidence 23344556666665 3332 34899999988 465
No 146
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=94.04 E-value=0.11 Score=51.68 Aligned_cols=68 Identities=18% Similarity=0.343 Sum_probs=48.3
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEecccc
Q 002047 701 KIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHE 773 (975)
Q Consensus 701 ~vvGDiHG~~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE 773 (975)
.|+||+||+++.+.+-++.+.-. .+. +--+|++||+..-....-+ +.-++.=+++.|--.+++-||||
T Consensus 1 LV~G~~~G~l~~~~~kv~~~~~k--~gp--Fd~~ic~Gdff~~~~~~~~-~~~y~~g~~~~pipTyf~ggn~~ 68 (150)
T cd07380 1 LVCGDVNGRLKALFEKVNTINKK--KGP--FDALLCVGDFFGDDEDDEE-LEAYKDGSKKVPIPTYFLGGNNP 68 (150)
T ss_pred CeeecCCccHHHHHHHHHHHhcc--cCC--eeEEEEecCccCCccchhh-HHHHhcCCccCCCCEEEECCCCC
Confidence 48999999999998877775321 221 2257889999986665534 44444445677888999999998
No 147
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=93.93 E-value=0.12 Score=57.10 Aligned_cols=71 Identities=24% Similarity=0.224 Sum_probs=46.6
Q ss_pred CCEEEEecCCCCHHH--HHHHHHHhCCCCCCCCccceeEEEeccccCC-CC-ChHHHHHHHHHhhhcCCCCEEEEecccc
Q 002047 698 APIKIFGDLHGQFGD--LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDR-GQ-HSLETITLLLALKVEYPNNVHLIRGNHE 773 (975)
Q Consensus 698 ~~i~vvGDiHG~~~~--L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDR-G~-~s~evl~ll~~lk~~~P~~v~llrGNHE 773 (975)
.+|+.+.|+|=.... ..+.+........+ -+++.|||+|+ .+ .--.++..|..|+.. -.+|.+.||||
T Consensus 45 ~~iv~lSDlH~~~~~~~~~~~~~~i~~~~~D------livltGD~~~~~~~~~~~~~~~~L~~L~~~--~gv~av~GNHd 116 (284)
T COG1408 45 LKIVQLSDLHSLPFREEKLALLIAIANELPD------LIVLTGDYVDGDRPPGVAALALFLAKLKAP--LGVFAVLGNHD 116 (284)
T ss_pred eEEEEeehhhhchhhHHHHHHHHHHHhcCCC------EEEEEeeeecCCCCCCHHHHHHHHHhhhcc--CCEEEEecccc
Confidence 458999999977655 22233332222112 68899999995 44 445556666666544 57999999998
Q ss_pred ccc
Q 002047 774 AAD 776 (975)
Q Consensus 774 ~~~ 776 (975)
...
T Consensus 117 ~~~ 119 (284)
T COG1408 117 YGV 119 (284)
T ss_pred ccc
Confidence 743
No 148
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.81 E-value=14 Score=44.92 Aligned_cols=112 Identities=15% Similarity=0.102 Sum_probs=63.2
Q ss_pred cEEEEECCCC--cEEEecCCCC--CC---CCccceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCC
Q 002047 151 DVHCYDVLTN--KWSRITPFGE--PP---TPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGP 223 (975)
Q Consensus 151 dv~~yD~~t~--~W~~l~~~g~--~P---~pR~~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~ 223 (975)
.++.+|..++ .|+.-..... .+ ......+.++.+++||+... ...++.+|..+....|+.-. ..
T Consensus 80 ~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------dg~l~ALDa~TGk~~W~~~~--~~ 150 (527)
T TIGR03075 80 RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------DARLVALDAKTGKVVWSKKN--GD 150 (527)
T ss_pred cEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------CCEEEEEECCCCCEEeeccc--cc
Confidence 6888998875 4876432210 00 11122334566778876432 24699999998876787643 11
Q ss_pred CCC-CCcccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEcc
Q 002047 224 GPG-PRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLE 272 (975)
Q Consensus 224 ~P~-~R~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~ 272 (975)
... .....+-++.++ .||+.........-..++.||.++....|+.-.
T Consensus 151 ~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 151 YKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred ccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 111 112233345565 666643222222345799999999987887543
No 149
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=93.49 E-value=0.13 Score=55.71 Aligned_cols=66 Identities=33% Similarity=0.360 Sum_probs=42.2
Q ss_pred CEEEEecCCCCH---------HHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChH-----HHHHHHHHhhhcCCCC
Q 002047 699 PIKIFGDLHGQF---------GDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSL-----ETITLLLALKVEYPNN 764 (975)
Q Consensus 699 ~i~vvGDiHG~~---------~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~-----evl~ll~~lk~~~P~~ 764 (975)
+|+.++|+||.+ ..|.++++...-...+ .-+|..||+++....+. .++..|-++ .-
T Consensus 2 ~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~-----~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~~-----g~ 71 (252)
T cd00845 2 TILHTNDLHGHFEPAGGVGGAARLATLIKEERAENEN-----TLLLDAGDNFDGSPPSTATKGEANIELMNAL-----GY 71 (252)
T ss_pred EEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCC-----eEEEeCCccCCCccchhccCCcHHHHHHHhc-----CC
Confidence 578999999887 4556666665432111 14567999999887643 455555444 22
Q ss_pred EEEEeccccc
Q 002047 765 VHLIRGNHEA 774 (975)
Q Consensus 765 v~llrGNHE~ 774 (975)
.++..||||.
T Consensus 72 d~~~~GNHe~ 81 (252)
T cd00845 72 DAVTIGNHEF 81 (252)
T ss_pred CEEeeccccc
Confidence 3345699996
No 150
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=93.14 E-value=1.9 Score=49.20 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=73.4
Q ss_pred CCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCC------ccce
Q 002047 237 GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVP------LASA 310 (975)
Q Consensus 237 ~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~------l~d~ 310 (975)
.+.+|+.++.. ..+.+||+.+. .=. ..+..+.+...- .++..+++||+.......... .-.+
T Consensus 75 ~gskIv~~d~~------~~t~vyDt~t~--av~---~~P~l~~pk~~p-isv~VG~~LY~m~~~~~~~~~~~~~~~~FE~ 142 (342)
T PF07893_consen 75 HGSKIVAVDQS------GRTLVYDTDTR--AVA---TGPRLHSPKRCP-ISVSVGDKLYAMDRSPFPEPAGRPDFPCFEA 142 (342)
T ss_pred cCCeEEEEcCC------CCeEEEECCCC--eEe---ccCCCCCCCcce-EEEEeCCeEEEeeccCccccccCccceeEEE
Confidence 33478888654 34889999887 333 333333334444 444458889999886443211 1112
Q ss_pred EEee-----cCCCCeEEEEECCCCCCCCcc-------eeeEEEe-CCEEEEE-cCcCCCCCccccCCcEEEEECCCCeEE
Q 002047 311 YGLA-----KHRDGRWEWAIAPGVSPSPRY-------QHAAVFV-NARLHVS-GGALGGGRMVEDSSSVAVLDTAAGVWC 376 (975)
Q Consensus 311 ~~~~-----~~~~~~W~w~~~~g~~P~~R~-------~hs~v~~-~~~L~V~-GG~~~~~~~~~~~~dv~~yD~~t~~W~ 376 (975)
..+. ......|.|...++ +|..+. -.+-+++ +..|||. -|.. ...|.||+++.+|+
T Consensus 143 l~~~~~~~~~~~~~~w~W~~LP~-PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~---------~GTysfDt~~~~W~ 212 (342)
T PF07893_consen 143 LVYRPPPDDPSPEESWSWRSLPP-PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR---------WGTYSFDTESHEWR 212 (342)
T ss_pred eccccccccccCCCcceEEcCCC-CCccccCCcccceEEEEEEecCCeEEEEecCCc---------eEEEEEEcCCccee
Confidence 2222 13467899999876 344332 3345555 6688883 2211 23789999999999
Q ss_pred EcccC
Q 002047 377 DTKSV 381 (975)
Q Consensus 377 ~v~~~ 381 (975)
++..=
T Consensus 213 ~~GdW 217 (342)
T PF07893_consen 213 KHGDW 217 (342)
T ss_pred eccce
Confidence 98653
No 151
>PRK05137 tolB translocation protein TolB; Provisional
Probab=92.80 E-value=25 Score=41.44 Aligned_cols=193 Identities=12% Similarity=0.044 Sum_probs=86.3
Q ss_pred cCcEEEEECCCCcEEEecCCCCCCCCccceEEEEeC-CEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCC
Q 002047 149 TADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVG-TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 227 (975)
Q Consensus 149 ~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~-~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~ 227 (975)
...+|..|.....=+.+.... . ........-+ ++|++..-. .+ ...+|++|+.+.. ...+. ..+..
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~---~-~v~~p~wSpDG~~lay~s~~-~g---~~~i~~~dl~~g~--~~~l~---~~~g~ 247 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGS---S-LVLTPRFSPNRQEITYMSYA-NG---RPRVYLLDLETGQ--RELVG---NFPGM 247 (435)
T ss_pred ceEEEEECCCCCCcEEEecCC---C-CeEeeEECCCCCEEEEEEec-CC---CCEEEEEECCCCc--EEEee---cCCCc
Confidence 457788887654434443221 1 1111111223 345444321 11 2589999998763 55554 22221
Q ss_pred CcccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCc
Q 002047 228 RYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPL 307 (975)
Q Consensus 228 R~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l 307 (975)
-. .....-++++|++....++ ..++|.+|+.+. ...++..... .........+++-++|..... + .
T Consensus 248 ~~-~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~--~~~~Lt~~~~-----~~~~~~~spDG~~i~f~s~~~-g--~ 313 (435)
T PRK05137 248 TF-APRFSPDGRKVVMSLSQGG---NTDIYTMDLRSG--TTTRLTDSPA-----IDTSPSYSPDGSQIVFESDRS-G--S 313 (435)
T ss_pred cc-CcEECCCCCEEEEEEecCC---CceEEEEECCCC--ceEEccCCCC-----ccCceeEcCCCCEEEEEECCC-C--C
Confidence 11 1111223435555443333 358999999888 6666654321 111223334554444433111 1 2
Q ss_pred cceEEeecCCCCeEEEEECCCCCCCCcceeeEEEeCCEEEEEcCcCCCCCccccCCcEEEEECCCCeEEEcc
Q 002047 308 ASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTK 379 (975)
Q Consensus 308 ~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v~~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 379 (975)
.++|.++.... ..+..... ..+.......-+++.+++...... ...++++|+.+..+..+.
T Consensus 314 ~~Iy~~d~~g~-~~~~lt~~----~~~~~~~~~SpdG~~ia~~~~~~~------~~~i~~~d~~~~~~~~lt 374 (435)
T PRK05137 314 PQLYVMNADGS-NPRRISFG----GGRYSTPVWSPRGDLIAFTKQGGG------QFSIGVMKPDGSGERILT 374 (435)
T ss_pred CeEEEEECCCC-CeEEeecC----CCcccCeEECCCCCEEEEEEcCCC------ceEEEEEECCCCceEecc
Confidence 35677764432 22222111 111111112224443333322111 235899999877665543
No 152
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=91.60 E-value=0.23 Score=51.98 Aligned_cols=74 Identities=22% Similarity=0.324 Sum_probs=43.5
Q ss_pred CCEEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHH-------------------------HHH
Q 002047 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLE-------------------------TIT 752 (975)
Q Consensus 698 ~~i~vvGDiHG~~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~e-------------------------vl~ 752 (975)
.+|..+.|.||+++.|.++.+.+.-...+ -+||+||++-....+-| .|.
T Consensus 6 ~kilA~s~~~g~~e~l~~l~~~~~e~~~D------~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~ 79 (255)
T PF14582_consen 6 RKILAISNFRGDFELLERLVEVIPEKGPD------AVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALD 79 (255)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHT-S------EEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHH
T ss_pred hhheeecCcchHHHHHHHHHhhccccCCC------EEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHH
Confidence 46899999999999999998877443333 69999999965543333 333
Q ss_pred HHHHhhhcCCCCEEEEeccccccch
Q 002047 753 LLLALKVEYPNNVHLIRGNHEAADI 777 (975)
Q Consensus 753 ll~~lk~~~P~~v~llrGNHE~~~~ 777 (975)
-++..--..+--+++|.||||....
T Consensus 80 ~ff~~L~~~~~p~~~vPG~~Dap~~ 104 (255)
T PF14582_consen 80 KFFRILGELGVPVFVVPGNMDAPER 104 (255)
T ss_dssp HHHHHHHCC-SEEEEE--TTS-SHH
T ss_pred HHHHHHHhcCCcEEEecCCCCchHH
Confidence 3333334455679999999999543
No 153
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=91.29 E-value=0.83 Score=44.98 Aligned_cols=44 Identities=20% Similarity=0.220 Sum_probs=29.6
Q ss_pred eEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccccchhhh
Q 002047 733 DYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINAL 780 (975)
Q Consensus 733 ~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~ 780 (975)
.+.+|||+.-.-..--+..+++-+ .|.+++|++||||-..-...
T Consensus 48 ~lwhLGDl~~~~n~~~~a~~Iler----LnGrkhlv~GNhDk~~~~~~ 91 (186)
T COG4186 48 VLWHLGDLSSGANRERAAGLILER----LNGRKHLVPGNHDKCHPMYR 91 (186)
T ss_pred eEEEecccccccchhhHHHHHHHH----cCCcEEEeeCCCCCCccccc
Confidence 688899999654443443344433 36899999999998544333
No 154
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=90.71 E-value=2.1 Score=49.86 Aligned_cols=191 Identities=18% Similarity=0.203 Sum_probs=100.0
Q ss_pred CEEEEecCCC-CH----HHHHHHHHHhCCCCCCCCccceeEEE-eccccCC-C-----------CChHHHHHHHHHhhhc
Q 002047 699 PIKIFGDLHG-QF----GDLMRLFDEYGSPSTAGDIAYIDYLF-LGDYVDR-G-----------QHSLETITLLLALKVE 760 (975)
Q Consensus 699 ~i~vvGDiHG-~~----~~L~~ll~~~g~~~~~~~~~~~~~vf-LGDyVDR-G-----------~~s~evl~ll~~lk~~ 760 (975)
.+.+++|+|= .. +.+..+++.++-+.. --...+|+. -||.||. | .+..|-...+..+-..
T Consensus 227 ~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~--~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L~~ 304 (481)
T COG1311 227 YVALISDIHRGSKEFLEDEFEKFIDWLNGPGD--LASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFLDQ 304 (481)
T ss_pred EEEEEeeeecccHHHHHHHHHHHHHHhcCCcc--cccceEEEEEecccccccccccCcccccccccchHHHHHHHHHHhh
Confidence 4789999995 22 334445555443321 112335655 7799994 2 1223334444444444
Q ss_pred CCC--CEEEEeccccccchhhhcCChHHHHHHhCCcccchhhhhhhccccccceEEEE-cceEEEecCCccCcccCHhhh
Q 002047 761 YPN--NVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALI-EKKIICMHGGIGRSINHVEQI 837 (975)
Q Consensus 761 ~P~--~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i-~~~il~vHgGi~~~~~~~~~i 837 (975)
-|. .|++..||||..-.....-+..+..+ .+|...+-.|-.=|...-+ +..+|..|| .+++||
T Consensus 305 vp~~I~v~i~PGnhDa~r~a~PQp~~~~~~k--------slf~~~n~~~v~NP~~~~l~G~~vL~~hG------~sidDi 370 (481)
T COG1311 305 VPEHIKVFIMPGNHDAVRQALPQPHFPELIK--------SLFSLNNLLFVSNPALVSLHGVDVLIYHG------RSIDDI 370 (481)
T ss_pred CCCCceEEEecCCCCccccccCCCCcchhhc--------ccccccceEecCCCcEEEECCEEEEEecC------CCHHHH
Confidence 555 58999999999765443323333222 1232222222222444444 347788887 355555
Q ss_pred hhccCCcccCCCC-------------cceeccccCCCCCCCCCCCcccCCCCCceeeeCHHHHHHHHHHcCCeEEEEecc
Q 002047 838 ENLQRPITMEAGS-------------IVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHE 904 (975)
Q Consensus 838 ~~i~rp~~~~~~~-------------~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~ 904 (975)
.+.-.....+.-. +...+-+|.-|...|- |.=.---++++.||+
T Consensus 371 i~~vP~~~~~~~~~ame~lLk~rHlaPtygg~~p~aP~~kD~-----------------------lVIeevPDv~~~Ghv 427 (481)
T COG1311 371 IKLVPGADYDSPLKAMEELLKRRHLAPTYGGTLPIAPETKDY-----------------------LVIEEVPDVFHTGHV 427 (481)
T ss_pred HhhCCCCCccchHHHHHHHHHhcccCCCCCCccccccCCcCc-----------------------eeeccCCcEEEEccc
Confidence 4432222211100 1223344544443210 111112356788999
Q ss_pred ccccceEEecCCeEEEEeccccccC
Q 002047 905 CVMDGFERFAQGHLITLFSATNYCG 929 (975)
Q Consensus 905 ~~~~G~~~~~~~~~iTvfSa~~y~~ 929 (975)
.. .|+....+.++|-.++-+.+..
T Consensus 428 h~-~g~~~y~gv~~vns~T~q~qTe 451 (481)
T COG1311 428 HK-FGTGVYEGVNLVNSGTWQEQTE 451 (481)
T ss_pred cc-cceeEEeccceEEeeeecchhc
Confidence 86 8888888888888888776543
No 155
>PLN02533 probable purple acid phosphatase
Probab=90.57 E-value=0.37 Score=56.58 Aligned_cols=27 Identities=11% Similarity=0.272 Sum_probs=21.9
Q ss_pred HHHHHHHHHHcCCeEEEEeccccccce
Q 002047 884 PDRVMEFCNNNDLQLIVRAHECVMDGF 910 (975)
Q Consensus 884 ~~~~~~fl~~~~l~~iiR~H~~~~~G~ 910 (975)
.+.++.+++++++++++-||.-..+-+
T Consensus 311 r~~le~Ll~~~~VdlvlsGH~H~YeR~ 337 (427)
T PLN02533 311 KESMETLLYKARVDLVFAGHVHAYERF 337 (427)
T ss_pred HHHHHHHHHHhCCcEEEecceeccccc
Confidence 357888999999999999999764443
No 156
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=90.55 E-value=6.6 Score=44.82 Aligned_cols=122 Identities=18% Similarity=0.207 Sum_probs=70.2
Q ss_pred eCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEeCCcEEEEEcCCCCCCCCC-----cEE
Q 002047 183 VGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLA-----DVW 257 (975)
Q Consensus 183 ~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~~~~~lyV~GG~~g~~~~n-----dv~ 257 (975)
.+++|+..+.. ..+.+||..+.. -...+ .++.+...-.++.+++ +||++.......... .++
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt~t~a--v~~~P---~l~~pk~~pisv~VG~-~LY~m~~~~~~~~~~~~~~~~FE 141 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDTDTRA--VATGP---RLHSPKRCPISVSVGD-KLYAMDRSPFPEPAGRPDFPCFE 141 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEECCCCe--EeccC---CCCCCCcceEEEEeCC-eEEEeeccCccccccCccceeEE
Confidence 48899998664 337799998863 33333 4455555556667787 699998764322111 444
Q ss_pred EE--E------CCCCCcEEEEccCCCCCCCCcce---eEEEEE-eCCeEEE-ecCCCCCCCCccceEEeecCCCCeEEEE
Q 002047 258 AL--D------TAAKPYEWRKLEPEGEGPPPCMY---ATASAR-SDGLLLL-CGGRDASSVPLASAYGLAKHRDGRWEWA 324 (975)
Q Consensus 258 ~y--D------l~s~~~~W~~v~~~~~~P~~r~~---~~a~~~-~~g~lyv-fGG~~~~~~~l~d~~~~~~~~~~~W~w~ 324 (975)
++ + .....|.|+.+++.+.....+.. -++-++ .+..|+| .-|.. .-+|.|+..+. +|++.
T Consensus 142 ~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------~GTysfDt~~~-~W~~~ 214 (342)
T PF07893_consen 142 ALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------WGTYSFDTESH-EWRKH 214 (342)
T ss_pred EeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc------eEEEEEEcCCc-ceeec
Confidence 44 3 23456899998764322111110 233333 3778888 43321 24889987765 45433
No 157
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=89.96 E-value=0.47 Score=52.35 Aligned_cols=64 Identities=25% Similarity=0.261 Sum_probs=37.9
Q ss_pred CEEEEecCCCCHH----------------HHHHHHHHhCCCCCCCCccceeEEE--eccccCCCCCh-----------HH
Q 002047 699 PIKIFGDLHGQFG----------------DLMRLFDEYGSPSTAGDIAYIDYLF--LGDYVDRGQHS-----------LE 749 (975)
Q Consensus 699 ~i~vvGDiHG~~~----------------~L~~ll~~~g~~~~~~~~~~~~~vf--LGDyVDRG~~s-----------~e 749 (975)
.|+.++|+||.+. .|..+++...-... ..|+ .||+++..+.+ ..
T Consensus 2 ~il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~~-------~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~ 74 (277)
T cd07410 2 RILATSDLHGNLLPYDYYTDKPDASGGLARVATLIKKARAENP-------NTLLIDNGDTIQGSPLADYYAKIEDGDPHP 74 (277)
T ss_pred eEEEEeccccceeCccccCCCcCCccCHHHHHHHHHHHHhcCC-------CeEEEeCCccCCccHHHHHhhhcccCCCCh
Confidence 4788999999973 35555655532111 2333 69999965422 22
Q ss_pred HHHHHHHhhhcCCCCEEEEeccccc
Q 002047 750 TITLLLALKVEYPNNVHLIRGNHEA 774 (975)
Q Consensus 750 vl~ll~~lk~~~P~~v~llrGNHE~ 774 (975)
++..|-.+. --++..||||.
T Consensus 75 ~~~~ln~~g-----~d~~~lGNHe~ 94 (277)
T cd07410 75 MIAAMNALG-----YDAGTLGNHEF 94 (277)
T ss_pred HHHHHHhcC-----CCEEeecccCc
Confidence 455555442 22455699996
No 158
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=89.35 E-value=0.91 Score=52.78 Aligned_cols=73 Identities=22% Similarity=0.205 Sum_probs=48.2
Q ss_pred CCEEEEecCCCC-------------HHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCC--
Q 002047 698 APIKIFGDLHGQ-------------FGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYP-- 762 (975)
Q Consensus 698 ~~i~vvGDiHG~-------------~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P-- 762 (975)
+++..+.|+|=- +..|..+++.+.-...+ -+|+-||+.|+..-+.+++.++...-.+.-
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD------~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~ 74 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVD------FVLIAGDLFDTNNPSPRALKLFLEALRRLKDA 74 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCC------EEEEccccccCCCCCHHHHHHHHHHHHHhccC
Confidence 467888888833 23344444444322222 588899999999988888766555433322
Q ss_pred -CCEEEEeccccccc
Q 002047 763 -NNVHLIRGNHEAAD 776 (975)
Q Consensus 763 -~~v~llrGNHE~~~ 776 (975)
--||+|.||||...
T Consensus 75 ~Ipv~~I~GNHD~~~ 89 (390)
T COG0420 75 GIPVVVIAGNHDSPS 89 (390)
T ss_pred CCcEEEecCCCCchh
Confidence 26999999999864
No 159
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=89.35 E-value=0.44 Score=56.81 Aligned_cols=71 Identities=20% Similarity=0.217 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHcCCe----EEEEeccccc--cceE-EecCCeEEEE---eccccccCCCCCcEEEEEEcCCceEEeEEec
Q 002047 883 GPDRVMEFCNNNDLQ----LIVRAHECVM--DGFE-RFAQGHLITL---FSATNYCGTANNAGAILVLGRDLVVVPKLIH 952 (975)
Q Consensus 883 g~~~~~~fl~~~~l~----~iiR~H~~~~--~G~~-~~~~~~~iTv---fSa~~y~~~~~n~ga~l~i~~~~~~~~~~~~ 952 (975)
.++..++.|+..||+ .||-||.+|. +|=. ..++||++.| ||.. |.... -.|++-+|-...-+...-++
T Consensus 507 ~e~~c~~IL~EFgl~~~~~hIINGHvPVk~k~GEsPIKa~Gkl~VIDGGfskA-Yqk~T-GIAGYTLiyNS~gl~L~~H~ 584 (640)
T PF06874_consen 507 DEEICDKILEEFGLDPERGHIINGHVPVKVKKGESPIKANGKLIVIDGGFSKA-YQKTT-GIAGYTLIYNSYGLQLVAHQ 584 (640)
T ss_pred CHHHHHHHHHHhCCCCCCCeEECCccccccCCCCCCccCCCEEEEEcChhhhh-hcccc-CccceEEEecCCcceeccCC
Confidence 567788899999999 9999999996 5543 4689999999 7765 44332 34455555555555555555
Q ss_pred CCC
Q 002047 953 PLP 955 (975)
Q Consensus 953 ~~~ 955 (975)
|-.
T Consensus 585 pF~ 587 (640)
T PF06874_consen 585 PFE 587 (640)
T ss_pred CCC
Confidence 544
No 160
>PRK04792 tolB translocation protein TolB; Provisional
Probab=88.59 E-value=60 Score=38.52 Aligned_cols=192 Identities=15% Similarity=0.129 Sum_probs=90.3
Q ss_pred cCcEEEEECCCCcEEEecCCCCCCCCccceEEEEeC-CEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCC
Q 002047 149 TADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVG-TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 227 (975)
Q Consensus 149 ~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~-~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~ 227 (975)
...++..|.....-+.+.... . ........-+ ++|++.- .. .+ ...+|++|+.+.. -+.+. ..+..
T Consensus 197 ~~~l~i~d~dG~~~~~l~~~~---~-~~~~p~wSPDG~~La~~s-~~-~g--~~~L~~~dl~tg~--~~~lt---~~~g~ 263 (448)
T PRK04792 197 PYQLMIADYDGYNEQMLLRSP---E-PLMSPAWSPDGRKLAYVS-FE-NR--KAEIFVQDIYTQV--REKVT---SFPGI 263 (448)
T ss_pred ceEEEEEeCCCCCceEeecCC---C-cccCceECCCCCEEEEEE-ec-CC--CcEEEEEECCCCC--eEEec---CCCCC
Confidence 346777777665545443321 1 1111122223 3444432 11 11 2579999998753 44443 22211
Q ss_pred CcccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCe-EEEecCCCCCCCC
Q 002047 228 RYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGL-LLLCGGRDASSVP 306 (975)
Q Consensus 228 R~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~-lyvfGG~~~~~~~ 306 (975)
- ......-++++|++....++ ..++|.+|+.+. +.+++..... .........+++ |++.....+
T Consensus 264 ~-~~~~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg--~~~~lt~~~~-----~~~~p~wSpDG~~I~f~s~~~g---- 328 (448)
T PRK04792 264 N-GAPRFSPDGKKLALVLSKDG---QPEIYVVDIATK--ALTRITRHRA-----IDTEPSWHPDGKSLIFTSERGG---- 328 (448)
T ss_pred c-CCeeECCCCCEEEEEEeCCC---CeEEEEEECCCC--CeEECccCCC-----CccceEECCCCCEEEEEECCCC----
Confidence 1 11122223445666543333 258999999988 7777754321 111222333444 444432222
Q ss_pred ccceEEeecCCCCeEEEEECCCCCCCCcceeeEEEeCCEEEEEcCcCCCCCccccCCcEEEEECCCCeEEEcc
Q 002047 307 LASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTK 379 (975)
Q Consensus 307 l~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v~~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 379 (975)
..++|.++... +.++.....+. ........-+++.+++.+.... ...++++|+.+.....+.
T Consensus 329 ~~~Iy~~dl~~-g~~~~Lt~~g~----~~~~~~~SpDG~~l~~~~~~~g------~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 329 KPQIYRVNLAS-GKVSRLTFEGE----QNLGGSITPDGRSMIMVNRTNG------KFNIARQDLETGAMQVLT 390 (448)
T ss_pred CceEEEEECCC-CCEEEEecCCC----CCcCeeECCCCCEEEEEEecCC------ceEEEEEECCCCCeEEcc
Confidence 24677776543 34443322211 1111122224444444333221 246999999999887654
No 161
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=88.46 E-value=0.82 Score=52.40 Aligned_cols=57 Identities=32% Similarity=0.350 Sum_probs=39.6
Q ss_pred HHHHHHHhCCCCCCCCccceeEEEeccccCCCCC--hHHHHHHHHHhhhcCCC----CEEEEeccccc
Q 002047 713 LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQH--SLETITLLLALKVEYPN----NVHLIRGNHEA 774 (975)
Q Consensus 713 L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~--s~evl~ll~~lk~~~P~----~v~llrGNHE~ 774 (975)
|.+.|+..-+.-..+ -++|||||+|-|.+ .-|--.....+|..|+. .++.+.||||-
T Consensus 81 lrr~f~~~~~~lkPd-----vvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~~k~~~~~~~i~GNhDI 143 (410)
T KOG3662|consen 81 LRRSFDMSQWRLKPD-----VVFFLGDLFDEGQWAGDEEFKKRYERFKKIFGRKGNIKVIYIAGNHDI 143 (410)
T ss_pred HHHHHHHHHhccCCC-----EEEEeccccccCccCChHHHHHHHHHHHHhhCCCCCCeeEEeCCcccc
Confidence 445555544333221 57889999998875 35556677777777765 68999999997
No 162
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=88.43 E-value=55 Score=37.93 Aligned_cols=146 Identities=19% Similarity=0.194 Sum_probs=72.3
Q ss_pred ccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEe-CCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCC
Q 002047 201 EDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPP 279 (975)
Q Consensus 201 ~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~-~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~ 279 (975)
..++++|+.+.. ...+. ..+.... +.+.. +++.|++....++ ..++|.+|+.+. ..+.+......
T Consensus 214 ~~i~v~d~~~g~--~~~~~---~~~~~~~--~~~~spDg~~l~~~~~~~~---~~~i~~~d~~~~--~~~~l~~~~~~-- 279 (417)
T TIGR02800 214 PEIYVQDLATGQ--REKVA---SFPGMNG--APAFSPDGSKLAVSLSKDG---NPDIYVMDLDGK--QLTRLTNGPGI-- 279 (417)
T ss_pred cEEEEEECCCCC--EEEee---cCCCCcc--ceEECCCCCEEEEEECCCC---CccEEEEECCCC--CEEECCCCCCC--
Confidence 579999998763 44443 2222211 22222 3335665543332 257999999988 66766543221
Q ss_pred CcceeEEEEEeCC-eEEEecCCCCCCCCccceEEeecCCCCeEEEEECCCCCCCCcceeeEEE-eCCEEEEEcCcCCCCC
Q 002047 280 PCMYATASARSDG-LLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVF-VNARLHVSGGALGGGR 357 (975)
Q Consensus 280 ~r~~~~a~~~~~g-~lyvfGG~~~~~~~l~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v~-~~~~L~V~GG~~~~~~ 357 (975)
... .....++ +|++.....+ ...+|.++.... .+......+ ......++ -+++.+++......
T Consensus 280 --~~~-~~~s~dg~~l~~~s~~~g----~~~iy~~d~~~~-~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~~~-- 344 (417)
T TIGR02800 280 --DTE-PSWSPDGKSIAFTSDRGG----SPQIYMMDADGG-EVRRLTFRG-----GYNASPSWSPDGDLIAFVHREGG-- 344 (417)
T ss_pred --CCC-EEECCCCCEEEEEECCCC----CceEEEEECCCC-CEEEeecCC-----CCccCeEECCCCCEEEEEEccCC--
Confidence 111 1222344 4544433322 135777665433 333222111 11122222 24555555544321
Q ss_pred ccccCCcEEEEECCCCeEEEcc
Q 002047 358 MVEDSSSVAVLDTAAGVWCDTK 379 (975)
Q Consensus 358 ~~~~~~dv~~yD~~t~~W~~v~ 379 (975)
...++++|+.+..+..+.
T Consensus 345 ----~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 345 ----GFNIAVMDLDGGGERVLT 362 (417)
T ss_pred ----ceEEEEEeCCCCCeEEcc
Confidence 346999999997776654
No 163
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.26 E-value=33 Score=39.88 Aligned_cols=68 Identities=18% Similarity=0.271 Sum_probs=41.6
Q ss_pred EeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEeCCcEEEEEcCCCCCCCCCcEEEEEC
Q 002047 182 AVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDT 261 (975)
Q Consensus 182 ~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl 261 (975)
..++.+++.|+-. .-+-.+|+.+. .......|..-.-|++..+ -.+ ++|++-||+|+ .|-.||+
T Consensus 120 ~~d~t~l~s~sDd------~v~k~~d~s~a---~v~~~l~~htDYVR~g~~~-~~~-~hivvtGsYDg-----~vrl~Dt 183 (487)
T KOG0310|consen 120 PQDNTMLVSGSDD------KVVKYWDLSTA---YVQAELSGHTDYVRCGDIS-PAN-DHIVVTGSYDG-----KVRLWDT 183 (487)
T ss_pred ccCCeEEEecCCC------ceEEEEEcCCc---EEEEEecCCcceeEeeccc-cCC-CeEEEecCCCc-----eEEEEEe
Confidence 3577888888741 23444566654 3344445555555655443 233 38999999997 4666777
Q ss_pred CCCC
Q 002047 262 AAKP 265 (975)
Q Consensus 262 ~s~~ 265 (975)
.+.+
T Consensus 184 R~~~ 187 (487)
T KOG0310|consen 184 RSLT 187 (487)
T ss_pred ccCC
Confidence 7763
No 164
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=88.08 E-value=6.5 Score=43.48 Aligned_cols=105 Identities=15% Similarity=0.197 Sum_probs=62.2
Q ss_pred EEEeccCCCCC-ccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEeCCcEEEEEcCCCCCC-CCCcEEEEECCCCC
Q 002047 188 VIQGGIGPAGL-SAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKR-PLADVWALDTAAKP 265 (975)
Q Consensus 188 yv~GG~~~~~~-~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~~~~~lyV~GG~~g~~-~~ndv~~yDl~s~~ 265 (975)
||.|-+...+. ....+..||..+. +|..+- .--.. .=+.+...+++.||+.|-.+-.. ....+-.||..+.
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~--qW~~~g---~~i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~- 74 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNS--QWSSPG---NGISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ- 74 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCC--EeecCC---CCceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC-
Confidence 44444443333 5678999999887 499875 11111 11233344555888888654433 4567889999999
Q ss_pred cEEEEccCCC--CCCCCcceeEEEEEeCCeEEEecCC
Q 002047 266 YEWRKLEPEG--EGPPPCMYATASARSDGLLLLCGGR 300 (975)
Q Consensus 266 ~~W~~v~~~~--~~P~~r~~~~a~~~~~g~lyvfGG~ 300 (975)
+|..+.... ..|.+-..-.........+++.|..
T Consensus 75 -~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~ 110 (281)
T PF12768_consen 75 -TWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS 110 (281)
T ss_pred -eeeecCCcccccCCCcEEEEEeeccCCceEEEecee
Confidence 999887732 3343322222222344578887775
No 165
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=88.07 E-value=42 Score=36.17 Aligned_cols=93 Identities=15% Similarity=0.164 Sum_probs=47.4
Q ss_pred CcEEEEECCCCcEEEecCCCCCCCCccceEEEEe--CCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCC
Q 002047 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAV--GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 227 (975)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~--~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~ 227 (975)
+.++.||..+.+....-..+ ..++ ..+.. ++.+|+.++. ...+.+||+.+.. ....+. ..
T Consensus 53 ~~v~~~d~~~~~~~~~~~~~--~~~~---~~~~~~~g~~l~~~~~~------~~~l~~~d~~~~~-~~~~~~------~~ 114 (300)
T TIGR03866 53 DTIQVIDLATGEVIGTLPSG--PDPE---LFALHPNGKILYIANED------DNLVTVIDIETRK-VLAEIP------VG 114 (300)
T ss_pred CeEEEEECCCCcEEEeccCC--CCcc---EEEECCCCCEEEEEcCC------CCeEEEEECCCCe-EEeEee------CC
Confidence 36788999887765432221 1121 22222 3356666542 2468999998753 122221 11
Q ss_pred CcccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCC
Q 002047 228 RYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAK 264 (975)
Q Consensus 228 R~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~ 264 (975)
..-+.++...++.+++++..++ +.++.||..+.
T Consensus 115 ~~~~~~~~~~dg~~l~~~~~~~----~~~~~~d~~~~ 147 (300)
T TIGR03866 115 VEPEGMAVSPDGKIVVNTSETT----NMAHFIDTKTY 147 (300)
T ss_pred CCcceEEECCCCCEEEEEecCC----CeEEEEeCCCC
Confidence 1123444444445666654432 24666788765
No 166
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=87.22 E-value=44 Score=38.38 Aligned_cols=159 Identities=15% Similarity=0.225 Sum_probs=86.6
Q ss_pred EEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEeCCcEEEEEcCCCCCCCCCcEEEEE
Q 002047 181 TAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALD 260 (975)
Q Consensus 181 ~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yD 260 (975)
+..++++|+.-. ...++.+|+.+....|...... ....-.+-..+.+++||+ |..++ .+++||
T Consensus 65 ~~~dg~v~~~~~-------~G~i~A~d~~~g~~~W~~~~~~----~~~~~~~~~~~~~G~i~~-g~~~g-----~~y~ld 127 (370)
T COG1520 65 ADGDGTVYVGTR-------DGNIFALNPDTGLVKWSYPLLG----AVAQLSGPILGSDGKIYV-GSWDG-----KLYALD 127 (370)
T ss_pred EeeCCeEEEecC-------CCcEEEEeCCCCcEEecccCcC----cceeccCceEEeCCeEEE-ecccc-----eEEEEE
Confidence 555678888711 1279999999876568765421 001111111222336555 43333 799999
Q ss_pred CCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCccceEEeecCCCCeEEEEECCCCCCCCcceeeEE
Q 002047 261 TAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAV 340 (975)
Q Consensus 261 l~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v 340 (975)
..+....|..-... . .....+.+..++.+|+.- .-..++.++.. +++-.|.......-..+...+.+
T Consensus 128 ~~~G~~~W~~~~~~-~----~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~-tG~~~W~~~~~~~~~~~~~~~~~ 194 (370)
T COG1520 128 ASTGTLVWSRNVGG-S----PYYASPPVVGDGTVYVGT-------DDGHLYALNAD-TGTLKWTYETPAPLSLSIYGSPA 194 (370)
T ss_pred CCCCcEEEEEecCC-C----eEEecCcEEcCcEEEEec-------CCCeEEEEEcc-CCcEEEEEecCCccccccccCce
Confidence 98888899887655 1 244555666677777753 12345666544 34444443332211222222223
Q ss_pred EeCCEEEEEcCcCCCCCccccCCcEEEEECCCC--eEEE
Q 002047 341 FVNARLHVSGGALGGGRMVEDSSSVAVLDTAAG--VWCD 377 (975)
Q Consensus 341 ~~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~--~W~~ 377 (975)
.-++.+|+- ... . ...++.+|++++ .|..
T Consensus 195 ~~~~~vy~~-~~~-~------~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 195 IASGTVYVG-SDG-Y------DGILYALNAEDGTLKWSQ 225 (370)
T ss_pred eecceEEEe-cCC-C------cceEEEEEccCCcEeeee
Confidence 445566654 321 0 125899999877 5764
No 167
>PRK03629 tolB translocation protein TolB; Provisional
Probab=85.95 E-value=80 Score=37.19 Aligned_cols=150 Identities=17% Similarity=0.112 Sum_probs=71.7
Q ss_pred ccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCC
Q 002047 201 EDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPP 280 (975)
Q Consensus 201 ~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~ 280 (975)
..+|++|+.+.. -+.+. ..+.. .......-++++|++....++ ..++|.+|+.+. +.+++.....
T Consensus 223 ~~i~i~dl~~G~--~~~l~---~~~~~-~~~~~~SPDG~~La~~~~~~g---~~~I~~~d~~tg--~~~~lt~~~~---- 287 (429)
T PRK03629 223 SALVIQTLANGA--VRQVA---SFPRH-NGAPAFSPDGSKLAFALSKTG---SLNLYVMDLASG--QIRQVTDGRS---- 287 (429)
T ss_pred cEEEEEECCCCC--eEEcc---CCCCC-cCCeEECCCCCEEEEEEcCCC---CcEEEEEECCCC--CEEEccCCCC----
Confidence 579999987753 34443 22211 111122223445665543333 236999999988 7777654321
Q ss_pred cceeEEEEEeCCeEEEecCCCCCCCCccceEEeecCCCCeEEEEECCCCCCCCcceeeEEEeCCEEEEEcCcCCCCCccc
Q 002047 281 CMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVE 360 (975)
Q Consensus 281 r~~~~a~~~~~g~lyvfGG~~~~~~~l~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v~~~~~L~V~GG~~~~~~~~~ 360 (975)
.........+++.++|...... ...+|.++.... ..+.....+ .........-+++.+++.+....
T Consensus 288 -~~~~~~wSPDG~~I~f~s~~~g---~~~Iy~~d~~~g-~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~g----- 353 (429)
T PRK03629 288 -NNTEPTWFPDSQNLAYTSDQAG---RPQVYKVNINGG-APQRITWEG----SQNQDADVSSDGKFMVMVSSNGG----- 353 (429)
T ss_pred -CcCceEECCCCCEEEEEeCCCC---CceEEEEECCCC-CeEEeecCC----CCccCEEECCCCCEEEEEEccCC-----
Confidence 1122233345554444332111 236676655433 222221111 11111122224444444333221
Q ss_pred cCCcEEEEECCCCeEEEccc
Q 002047 361 DSSSVAVLDTAAGVWCDTKS 380 (975)
Q Consensus 361 ~~~dv~~yD~~t~~W~~v~~ 380 (975)
...++++|++++.+..+..
T Consensus 354 -~~~I~~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 354 -QQHIAKQDLATGGVQVLTD 372 (429)
T ss_pred -CceEEEEECCCCCeEEeCC
Confidence 2359999999999887653
No 168
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=84.49 E-value=1.4 Score=48.96 Aligned_cols=66 Identities=29% Similarity=0.364 Sum_probs=41.2
Q ss_pred CEEEEecCCCCHHH--------------HHHHHHHhCCCCCCCCccceeEEEeccccCCCCC-h-----HHHHHHHHHhh
Q 002047 699 PIKIFGDLHGQFGD--------------LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQH-S-----LETITLLLALK 758 (975)
Q Consensus 699 ~i~vvGDiHG~~~~--------------L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~-s-----~evl~ll~~lk 758 (975)
.|+.+.|+||++.. |..+++....... ..-+|..||++...+. + ..++.+|-++.
T Consensus 2 ~il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~-----~~l~ld~GD~~~gs~~~s~~~~g~~~~~~~n~~g 76 (288)
T cd07412 2 QILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQNP-----NSLFVSAGDLIGASPFESALLQDEPTIEALNAMG 76 (288)
T ss_pred eEEEEeccccCccCCCCccccccccHHHHHHHHHHHHhcCC-----CeEEEeCCcccccccchhhcccCCcHHHHHHhhC
Confidence 47889999998653 5566666533211 1246679999986653 2 24566666653
Q ss_pred hcCCCCEEEEeccccc
Q 002047 759 VEYPNNVHLIRGNHEA 774 (975)
Q Consensus 759 ~~~P~~v~llrGNHE~ 774 (975)
. . .+..||||.
T Consensus 77 ~----D-a~t~GNHef 87 (288)
T cd07412 77 V----D-ASAVGNHEF 87 (288)
T ss_pred C----e-eeeeccccc
Confidence 2 2 355599996
No 169
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=84.40 E-value=30 Score=37.82 Aligned_cols=49 Identities=16% Similarity=0.287 Sum_probs=29.4
Q ss_pred eEEEeccccCCCCC------------------hHHHHHHHHHhhhcCCC--CEEEEeccccccchhhhc
Q 002047 733 DYLFLGDYVDRGQH------------------SLETITLLLALKVEYPN--NVHLIRGNHEAADINALF 781 (975)
Q Consensus 733 ~~vfLGDyVDRG~~------------------s~evl~ll~~lk~~~P~--~v~llrGNHE~~~~~~~~ 781 (975)
++|+.||.|+.-.. ..+-+..|-.+-..-+. .|.++.||||-.......
T Consensus 45 rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~l~~l~~~i~V~imPG~~Dp~~~~lPQ 113 (257)
T cd07387 45 RLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEAVKELDNFLSQLASSVPVDLMPGEFDPANHSLPQ 113 (257)
T ss_pred EEEEECCcccccccccchhhhhhccccccchhhHHHHHHHHHHHHhhhcCCeEEECCCCCCcccccCCC
Confidence 68889999995432 22223322222222222 588999999997765443
No 170
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=84.30 E-value=2 Score=47.25 Aligned_cols=25 Identities=12% Similarity=0.331 Sum_probs=20.3
Q ss_pred HHHHHHHHHHcCCeEEEEecccccc
Q 002047 884 PDRVMEFCNNNDLQLIVRAHECVMD 908 (975)
Q Consensus 884 ~~~~~~fl~~~~l~~iiR~H~~~~~ 908 (975)
...+.+++++++++++|-||.-...
T Consensus 190 ~~~l~~l~~~~~v~~vl~GH~H~~~ 214 (277)
T cd07378 190 VDRLLPLLKKYKVDAYLSGHDHNLQ 214 (277)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccce
Confidence 3567888999999999999986543
No 171
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=83.79 E-value=88 Score=35.88 Aligned_cols=193 Identities=17% Similarity=0.219 Sum_probs=99.8
Q ss_pred cEEEEECCCCc--EEEecCCCCCCCCccceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCC
Q 002047 151 DVHCYDVLTNK--WSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPR 228 (975)
Q Consensus 151 dv~~yD~~t~~--W~~l~~~g~~P~pR~~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R 228 (975)
.++.+|+.+.. |+...... .....-....-+++||+....+ .+|+||..+.+..|..-... . .+
T Consensus 79 ~i~A~d~~~g~~~W~~~~~~~---~~~~~~~~~~~~G~i~~g~~~g-------~~y~ld~~~G~~~W~~~~~~---~-~~ 144 (370)
T COG1520 79 NIFALNPDTGLVKWSYPLLGA---VAQLSGPILGSDGKIYVGSWDG-------KLYALDASTGTLVWSRNVGG---S-PY 144 (370)
T ss_pred cEEEEeCCCCcEEecccCcCc---ceeccCceEEeCCeEEEecccc-------eEEEEECCCCcEEEEEecCC---C-eE
Confidence 78889998876 87654310 0011111122256766554432 79999997766679876522 1 44
Q ss_pred cccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCcc
Q 002047 229 YGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLA 308 (975)
Q Consensus 229 ~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~ 308 (975)
..-..+..++ .+|+.- .-+.++++|..+....|+.-...+ .+ ........+.++.+|+-.-- . -.
T Consensus 145 ~~~~~v~~~~-~v~~~s------~~g~~~al~~~tG~~~W~~~~~~~-~~--~~~~~~~~~~~~~vy~~~~~----~-~~ 209 (370)
T COG1520 145 YASPPVVGDG-TVYVGT------DDGHLYALNADTGTLKWTYETPAP-LS--LSIYGSPAIASGTVYVGSDG----Y-DG 209 (370)
T ss_pred EecCcEEcCc-EEEEec------CCCeEEEEEccCCcEEEEEecCCc-cc--cccccCceeecceEEEecCC----C-cc
Confidence 4444433333 555542 235789999998888998554332 11 12222222667777774221 1 12
Q ss_pred ceEEeecCCCCeEEEEECCCCCCCCcce--eeEEEeCCEEEEEcCc-CCCCCccccCCcEEEEECCCC--eEEEcc
Q 002047 309 SAYGLAKHRDGRWEWAIAPGVSPSPRYQ--HAAVFVNARLHVSGGA-LGGGRMVEDSSSVAVLDTAAG--VWCDTK 379 (975)
Q Consensus 309 d~~~~~~~~~~~W~w~~~~g~~P~~R~~--hs~v~~~~~L~V~GG~-~~~~~~~~~~~dv~~yD~~t~--~W~~v~ 379 (975)
.++.++.. ++.-.|...... +..+.. -...+..+.+++-||. ... ....++++|..+. .|..-.
T Consensus 210 ~~~a~~~~-~G~~~w~~~~~~-~~~~~~~~~~~~~~~~~v~v~~~~~~~~-----~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 210 ILYALNAE-DGTLKWSQKVSQ-TIGRTAISTTPAVDGGPVYVDGGVYAGS-----YGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred eEEEEEcc-CCcEeeeeeeec-ccCcccccccccccCceEEECCcEEEEe-----cCCeEEEEEcCCCceEEEEec
Confidence 56777654 445556532211 111110 0123445555555552 111 1334788888766 576544
No 172
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=83.78 E-value=92 Score=36.07 Aligned_cols=142 Identities=18% Similarity=0.227 Sum_probs=72.3
Q ss_pred CcEEEEECCCCcEEEecCCCCCCCCccceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCc
Q 002047 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRY 229 (975)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~ 229 (975)
..++++|+.++....+... +......+....++.|++..... ...++|++|+.+.. ...+... ....
T Consensus 214 ~~i~v~d~~~g~~~~~~~~---~~~~~~~~~spDg~~l~~~~~~~----~~~~i~~~d~~~~~--~~~l~~~---~~~~- 280 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASF---PGMNGAPAFSPDGSKLAVSLSKD----GNPDIYVMDLDGKQ--LTRLTNG---PGID- 280 (417)
T ss_pred cEEEEEECCCCCEEEeecC---CCCccceEECCCCCEEEEEECCC----CCccEEEEECCCCC--EEECCCC---CCCC-
Confidence 5799999998877766543 11111111111233566553321 12579999998753 5555321 1110
Q ss_pred ccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCccc
Q 002047 230 GHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLAS 309 (975)
Q Consensus 230 ~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~d 309 (975)
......-++++|++.....+ ...+|++|+.+. +++.+..... .........+++.+++...... ...
T Consensus 281 ~~~~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~--~~~~l~~~~~-----~~~~~~~spdg~~i~~~~~~~~---~~~ 347 (417)
T TIGR02800 281 TEPSWSPDGKSIAFTSDRGG---SPQIYMMDADGG--EVRRLTFRGG-----YNASPSWSPDGDLIAFVHREGG---GFN 347 (417)
T ss_pred CCEEECCCCCEEEEEECCCC---CceEEEEECCCC--CEEEeecCCC-----CccCeEECCCCCEEEEEEccCC---ceE
Confidence 01111123435555443322 247999999888 7777654332 2222333446666666554431 235
Q ss_pred eEEeecCC
Q 002047 310 AYGLAKHR 317 (975)
Q Consensus 310 ~~~~~~~~ 317 (975)
++.++...
T Consensus 348 i~~~d~~~ 355 (417)
T TIGR02800 348 IAVMDLDG 355 (417)
T ss_pred EEEEeCCC
Confidence 66665543
No 173
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=83.30 E-value=2 Score=46.85 Aligned_cols=65 Identities=23% Similarity=0.223 Sum_probs=38.9
Q ss_pred CEEEEecCCCCHH----------HHHHHHHHhCCCCCCCCccceeEEEeccccCCCCCh-----HHHHHHHHHhhhcCCC
Q 002047 699 PIKIFGDLHGQFG----------DLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS-----LETITLLLALKVEYPN 763 (975)
Q Consensus 699 ~i~vvGDiHG~~~----------~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s-----~evl~ll~~lk~~~P~ 763 (975)
+|+-+.|+||++. .|..+++...-.+ ..-+|..||+++..+.+ ..++..|-++. -
T Consensus 2 ~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~~------~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~~g----~ 71 (257)
T cd07408 2 TILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKLD------NDLLVDAGDAIQGLPISDLDKGETIIKIMNAVG----Y 71 (257)
T ss_pred EEEEeccCcccccCCCCccccHHHHHHHHHHHHhcC------CEEEEeCCCcCCCchhhhhcCCcHHHHHHHhcC----C
Confidence 4778999999853 4556666653221 12466799999875533 23334443332 2
Q ss_pred CEEEEeccccc
Q 002047 764 NVHLIRGNHEA 774 (975)
Q Consensus 764 ~v~llrGNHE~ 774 (975)
.+ +..||||.
T Consensus 72 d~-~~~GNHef 81 (257)
T cd07408 72 DA-VTPGNHEF 81 (257)
T ss_pred cE-Eccccccc
Confidence 34 45699996
No 174
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=82.91 E-value=82 Score=34.86 Aligned_cols=151 Identities=20% Similarity=0.235 Sum_probs=74.9
Q ss_pred CCCCCCc-CceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcEEEEECCCCcEEEe
Q 002047 87 DGPGPRC-GHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRI 165 (975)
Q Consensus 87 ~~P~pR~-ght~t~~~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l 165 (975)
-.|.||. |-|..++... +..+.|||....-..+... ..+..-+.+..-.+.++.||...++-+-|
T Consensus 28 vG~~P~SGGDTYNAV~~v----------Dd~IyFGGWVHAPa~y~gk----~~g~~~IdF~NKYSHVH~yd~e~~~VrLL 93 (339)
T PF09910_consen 28 VGPPPTSGGDTYNAVEWV----------DDFIYFGGWVHAPAVYEGK----GDGRATIDFRNKYSHVHEYDTENDSVRLL 93 (339)
T ss_pred ccCCCCCCCccceeeeee----------cceEEEeeeecCCceeeec----cCCceEEEEeeccceEEEEEcCCCeEEEE
Confidence 3456666 3444444322 3467799986532111100 01112244556678999999988764433
Q ss_pred cCCCCCCCCccceEEE---E---eCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEeCCc
Q 002047 166 TPFGEPPTPRAAHVAT---A---VGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQR 239 (975)
Q Consensus 166 ~~~g~~P~pR~~hsa~---~---~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~~~~ 239 (975)
-.-+ .-.++.-.+=+ . ++++|++.=+-+ ...=-+|.+|..+.. -+.+. .-|.. -.+ .+.+.
T Consensus 94 Wkes-ih~~~~WaGEVSdIlYdP~~D~LLlAR~DG---h~nLGvy~ldr~~g~--~~~L~---~~ps~---KG~-~~~D~ 160 (339)
T PF09910_consen 94 WKES-IHDKTKWAGEVSDILYDPYEDRLLLARADG---HANLGVYSLDRRTGK--AEKLS---SNPSL---KGT-LVHDY 160 (339)
T ss_pred Eecc-cCCccccccchhheeeCCCcCEEEEEecCC---cceeeeEEEcccCCc--eeecc---CCCCc---Cce-Eeeee
Confidence 2111 01111111111 1 146777775432 222346777766653 44444 33433 222 22331
Q ss_pred EEEEEcCCCCCCCCCcEEEEECCCCCcEE
Q 002047 240 YLMAIGGNDGKRPLADVWALDTAAKPYEW 268 (975)
Q Consensus 240 ~lyV~GG~~g~~~~ndv~~yDl~s~~~~W 268 (975)
.+|-+ .+...-+..+.+||+.++ +|
T Consensus 161 a~F~i--~~~~~g~~~i~~~Dli~~--~~ 185 (339)
T PF09910_consen 161 ACFGI--NNFHKGVSGIHCLDLISG--KW 185 (339)
T ss_pred EEEec--cccccCCceEEEEEccCC--eE
Confidence 23322 333445789999999999 99
No 175
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=82.50 E-value=76 Score=34.53 Aligned_cols=159 Identities=15% Similarity=0.075 Sum_probs=81.9
Q ss_pred CCCccceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCc-EEEEEecCCC---CCCCcccE---EEEeCCcEEEEE
Q 002047 172 PTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPR-WHRVVVQGPG---PGPRYGHV---MALVGQRYLMAI 244 (975)
Q Consensus 172 P~pR~~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~-W~~v~~~g~~---P~~R~~h~---~~~~~~~~lyV~ 244 (975)
|.+-.+-+.+++++.+|.-=. ..+++.+||+.+.... |..++-.+.. |-...+++ .++-++ -|||+
T Consensus 66 p~~~~GtG~vVYngslYY~~~------~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~-GLWvI 138 (250)
T PF02191_consen 66 PYPWQGTGHVVYNGSLYYNKY------NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDEN-GLWVI 138 (250)
T ss_pred eceeccCCeEEECCcEEEEec------CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCC-CEEEE
Confidence 444556666777777766533 2578999999998633 5444422211 11111222 222244 58888
Q ss_pred cCCCCCCCCCcEEEEECCCCC--cEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCccceEEeecCCCCeEE
Q 002047 245 GGNDGKRPLADVWALDTAAKP--YEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWE 322 (975)
Q Consensus 245 GG~~g~~~~ndv~~yDl~s~~--~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~d~~~~~~~~~~~W~ 322 (975)
-....+.-.--|-++|+.+.. -+|..--+ +.....+-+.-|.||++-..+... ..-.+.||..++ +
T Consensus 139 Yat~~~~g~ivvskld~~tL~v~~tw~T~~~-------k~~~~naFmvCGvLY~~~s~~~~~--~~I~yafDt~t~---~ 206 (250)
T PF02191_consen 139 YATEDNNGNIVVSKLDPETLSVEQTWNTSYP-------KRSAGNAFMVCGVLYATDSYDTRD--TEIFYAFDTYTG---K 206 (250)
T ss_pred EecCCCCCcEEEEeeCcccCceEEEEEeccC-------chhhcceeeEeeEEEEEEECCCCC--cEEEEEEECCCC---c
Confidence 665443322345667776542 25653211 233333455578899987765443 233455665544 2
Q ss_pred EEECCCCCCCCcceeeEEEe---CCEEEEE
Q 002047 323 WAIAPGVSPSPRYQHAAVFV---NARLHVS 349 (975)
Q Consensus 323 w~~~~g~~P~~R~~hs~v~~---~~~L~V~ 349 (975)
-..+.-..+.+-..++++-+ +.+||+.
T Consensus 207 ~~~~~i~f~~~~~~~~~l~YNP~dk~LY~w 236 (250)
T PF02191_consen 207 EEDVSIPFPNPYGNISMLSYNPRDKKLYAW 236 (250)
T ss_pred eeceeeeeccccCceEeeeECCCCCeEEEE
Confidence 22221111223334555555 3578887
No 176
>PRK04922 tolB translocation protein TolB; Provisional
Probab=82.34 E-value=1.1e+02 Score=35.97 Aligned_cols=147 Identities=20% Similarity=0.246 Sum_probs=71.3
Q ss_pred cccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCC
Q 002047 200 AEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPP 279 (975)
Q Consensus 200 ~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~ 279 (975)
...+|++|+.+.. ...+. ..+.. .......-++++|++....++ ..++|.+|+.+. ..+++.....
T Consensus 227 ~~~l~~~dl~~g~--~~~l~---~~~g~-~~~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g--~~~~lt~~~~--- 292 (433)
T PRK04922 227 RSAIYVQDLATGQ--RELVA---SFRGI-NGAPSFSPDGRRLALTLSRDG---NPEIYVMDLGSR--QLTRLTNHFG--- 292 (433)
T ss_pred CcEEEEEECCCCC--EEEec---cCCCC-ccCceECCCCCEEEEEEeCCC---CceEEEEECCCC--CeEECccCCC---
Confidence 3579999998764 44443 22221 111122223445655433333 258999999888 6666543321
Q ss_pred CcceeEEEEEeCCeEEEecC-CCCCCCCccceEEeecCCCCeEEEEECCCCCCCCcceeeEEEe--CCEEEEEcCcCCCC
Q 002047 280 PCMYATASARSDGLLLLCGG-RDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFV--NARLHVSGGALGGG 356 (975)
Q Consensus 280 ~r~~~~a~~~~~g~lyvfGG-~~~~~~~l~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v~~--~~~L~V~GG~~~~~ 356 (975)
.........+++-++|.. ..+ ..++|.++... +.++.....+ .+....++. +..|++..+. +.
T Consensus 293 --~~~~~~~spDG~~l~f~sd~~g----~~~iy~~dl~~-g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~~-~~- 358 (433)
T PRK04922 293 --IDTEPTWAPDGKSIYFTSDRGG----RPQIYRVAASG-GSAERLTFQG-----NYNARASVSPDGKKIAMVHGS-GG- 358 (433)
T ss_pred --CccceEECCCCCEEEEEECCCC----CceEEEEECCC-CCeEEeecCC-----CCccCEEECCCCCEEEEEECC-CC-
Confidence 111223334555444432 222 13577765443 3333332221 111222222 3455554332 11
Q ss_pred CccccCCcEEEEECCCCeEEEcc
Q 002047 357 RMVEDSSSVAVLDTAAGVWCDTK 379 (975)
Q Consensus 357 ~~~~~~~dv~~yD~~t~~W~~v~ 379 (975)
...++++|+.++.+..+.
T Consensus 359 -----~~~I~v~d~~~g~~~~Lt 376 (433)
T PRK04922 359 -----QYRIAVMDLSTGSVRTLT 376 (433)
T ss_pred -----ceeEEEEECCCCCeEECC
Confidence 236999999998887654
No 177
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=82.26 E-value=19 Score=40.60 Aligned_cols=104 Identities=19% Similarity=0.193 Sum_probs=63.4
Q ss_pred ccCcEEEEECCCCcEEEecCCCCCCCCccceEEEEeC-CEEEEEecc---CCCCCccccEEEEEcCCCCCcEEEEEecCC
Q 002047 148 ATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVG-TMVVIQGGI---GPAGLSAEDLHVLDLTQQRPRWHRVVVQGP 223 (975)
Q Consensus 148 ~~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~-~~iyv~GG~---~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~ 223 (975)
.+..+|.||..+++-.-.- +.+-.++.+..-+ ..+|+..-+ ...+...+-+.+||..+..++++..-+.+
T Consensus 15 ~~~rv~viD~d~~k~lGmi-----~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k- 88 (342)
T PF06433_consen 15 MTSRVYVIDADSGKLLGMI-----DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPK- 88 (342)
T ss_dssp SSEEEEEEETTTTEEEEEE-----EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-
T ss_pred ccceEEEEECCCCcEEEEe-----ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCc-
Confidence 4568999999988754443 3334455444333 377776543 23445677889999999876676554221
Q ss_pred CCCCCc------ccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCC
Q 002047 224 GPGPRY------GHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAK 264 (975)
Q Consensus 224 ~P~~R~------~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~ 264 (975)
+|. +.....-+++.+||+= -.+..+|-+.|+..+
T Consensus 89 ---~R~~~~~~~~~~~ls~dgk~~~V~N----~TPa~SVtVVDl~~~ 128 (342)
T PF06433_consen 89 ---PRAQVVPYKNMFALSADGKFLYVQN----FTPATSVTVVDLAAK 128 (342)
T ss_dssp ----B--BS--GGGEEE-TTSSEEEEEE----ESSSEEEEEEETTTT
T ss_pred ---chheecccccceEEccCCcEEEEEc----cCCCCeEEEEECCCC
Confidence 133 2233334666788862 345678999999988
No 178
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=81.57 E-value=21 Score=41.17 Aligned_cols=99 Identities=14% Similarity=0.180 Sum_probs=59.5
Q ss_pred ccCcEEEEECCCCcEEEecCCCCCCCCccceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCC
Q 002047 148 ATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 227 (975)
Q Consensus 148 ~~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~ 227 (975)
...-+|.||+.+.+-.++.++.-.+.+-...-.+...+.++++-|.. .-++++...+. +|..-- .++..
T Consensus 278 rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~------G~I~lLhakT~--eli~s~---KieG~ 346 (514)
T KOG2055|consen 278 RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN------GHIHLLHAKTK--ELITSF---KIEGV 346 (514)
T ss_pred cceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC------ceEEeehhhhh--hhhhee---eeccE
Confidence 34478999999999999977644443222333344455566666642 34666666554 353222 23333
Q ss_pred CcccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCC
Q 002047 228 RYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAK 264 (975)
Q Consensus 228 R~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~ 264 (975)
....+.... ++.||+.||.. .||+||+.++
T Consensus 347 v~~~~fsSd-sk~l~~~~~~G------eV~v~nl~~~ 376 (514)
T KOG2055|consen 347 VSDFTFSSD-SKELLASGGTG------EVYVWNLRQN 376 (514)
T ss_pred EeeEEEecC-CcEEEEEcCCc------eEEEEecCCc
Confidence 344444433 34888888853 7999999887
No 179
>PRK13684 Ycf48-like protein; Provisional
Probab=81.42 E-value=1e+02 Score=34.99 Aligned_cols=176 Identities=12% Similarity=0.212 Sum_probs=80.6
Q ss_pred CCcEEEecCCCCCCCCccceEEEEeC-CEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEeC
Q 002047 159 TNKWSRITPFGEPPTPRAAHVATAVG-TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVG 237 (975)
Q Consensus 159 t~~W~~l~~~g~~P~pR~~hsa~~~~-~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~~ 237 (975)
-.+|+++.... ..+........++ +.+++.|.. ..+++-+-.-. .|+.+.. +..-.-+.+....
T Consensus 118 G~tW~~~~~~~--~~~~~~~~i~~~~~~~~~~~g~~-------G~i~~S~DgG~--tW~~~~~----~~~g~~~~i~~~~ 182 (334)
T PRK13684 118 GKNWTRIPLSE--KLPGSPYLITALGPGTAEMATNV-------GAIYRTTDGGK--NWEALVE----DAAGVVRNLRRSP 182 (334)
T ss_pred CCCCeEccCCc--CCCCCceEEEEECCCcceeeecc-------ceEEEECCCCC--CceeCcC----CCcceEEEEEECC
Confidence 35898885321 1222223344444 356666542 23433332223 4998751 2222334454555
Q ss_pred CcEEEEEcCCCCCCCCCcEEEE-ECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCccceEEee-c
Q 002047 238 QRYLMAIGGNDGKRPLADVWAL-DTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLA-K 315 (975)
Q Consensus 238 ~~~lyV~GG~~g~~~~ndv~~y-Dl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~d~~~~~-~ 315 (975)
++ .|+..|..| .++.. |.... +|+.+..... +.........++.+|++|... . ..+. .
T Consensus 183 ~g-~~v~~g~~G-----~i~~s~~~gg~--tW~~~~~~~~----~~l~~i~~~~~g~~~~vg~~G-~-------~~~~s~ 242 (334)
T PRK13684 183 DG-KYVAVSSRG-----NFYSTWEPGQT--AWTPHQRNSS----RRLQSMGFQPDGNLWMLARGG-Q-------IRFNDP 242 (334)
T ss_pred CC-eEEEEeCCc-----eEEEEcCCCCC--eEEEeeCCCc----ccceeeeEcCCCCEEEEecCC-E-------EEEccC
Confidence 54 444444333 23332 34445 7988754322 233444455678888886532 1 1221 1
Q ss_pred CCCCeEEEEECCCCCCCCcceeeEEEe-CCEEEEEcCcCCCCCccccCCcEEEEECCCCeEEEccc
Q 002047 316 HRDGRWEWAIAPGVSPSPRYQHAAVFV-NARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKS 380 (975)
Q Consensus 316 ~~~~~W~w~~~~g~~P~~R~~hs~v~~-~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 380 (975)
.....|+-...+.. .....-+++++. ++.+|++|.. ..++.-.-.-.+|..+..
T Consensus 243 d~G~sW~~~~~~~~-~~~~~l~~v~~~~~~~~~~~G~~----------G~v~~S~d~G~tW~~~~~ 297 (334)
T PRK13684 243 DDLESWSKPIIPEI-TNGYGYLDLAYRTPGEIWAGGGN----------GTLLVSKDGGKTWEKDPV 297 (334)
T ss_pred CCCCccccccCCcc-ccccceeeEEEcCCCCEEEEcCC----------CeEEEeCCCCCCCeECCc
Confidence 22224543221101 011122334444 5678887753 124443444569988754
No 180
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=81.13 E-value=1.2e+02 Score=35.45 Aligned_cols=149 Identities=17% Similarity=0.173 Sum_probs=77.5
Q ss_pred CCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCC
Q 002047 184 GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAA 263 (975)
Q Consensus 184 ~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s 263 (975)
|...++++|. ..=+|.||+.+. +-.++.....++.+-...-.+...+ .++++-|..| -|+.+...+
T Consensus 269 G~~~i~~s~r------rky~ysyDle~a--k~~k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G-----~I~lLhakT 334 (514)
T KOG2055|consen 269 GHSVIFTSGR------RKYLYSYDLETA--KVTKLKPPYGVEEKSMERFEVSHDS-NFIAIAGNNG-----HIHLLHAKT 334 (514)
T ss_pred CceEEEeccc------ceEEEEeecccc--ccccccCCCCcccchhheeEecCCC-CeEEEcccCc-----eEEeehhhh
Confidence 3457888875 345889999885 4666653333332222222233344 4666666654 466666766
Q ss_pred CCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCccceEEeecCCCC-eEEEEECCCCCCCCcceee-EEE
Q 002047 264 KPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDG-RWEWAIAPGVSPSPRYQHA-AVF 341 (975)
Q Consensus 264 ~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~d~~~~~~~~~~-~W~w~~~~g~~P~~R~~hs-~v~ 341 (975)
+ .|..--.+ .......+....+.+||+.||.. .+|.++...+. .-+|....+. .+-+ |..
T Consensus 335 ~--eli~s~Ki----eG~v~~~~fsSdsk~l~~~~~~G-------eV~v~nl~~~~~~~rf~D~G~v-----~gts~~~S 396 (514)
T KOG2055|consen 335 K--ELITSFKI----EGVVSDFTFSSDSKELLASGGTG-------EVYVWNLRQNSCLHRFVDDGSV-----HGTSLCIS 396 (514)
T ss_pred h--hhhheeee----ccEEeeEEEecCCcEEEEEcCCc-------eEEEEecCCcceEEEEeecCcc-----ceeeeeec
Confidence 6 55321111 11233444445566888888743 46777655442 2234443322 2223 233
Q ss_pred eCCEEEEEcCcCCCCCccccCCcEEEEECCCC
Q 002047 342 VNARLHVSGGALGGGRMVEDSSSVAVLDTAAG 373 (975)
Q Consensus 342 ~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~ 373 (975)
.++.++.+|-..+ -|-+||.++.
T Consensus 397 ~ng~ylA~GS~~G---------iVNIYd~~s~ 419 (514)
T KOG2055|consen 397 LNGSYLATGSDSG---------IVNIYDGNSC 419 (514)
T ss_pred CCCceEEeccCcc---------eEEEeccchh
Confidence 4666666664322 2567775443
No 181
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=80.90 E-value=3.2 Score=45.47 Aligned_cols=35 Identities=23% Similarity=0.159 Sum_probs=20.9
Q ss_pred EEEeccccCCCCCh-----HHHHHHHHHhhhcCCCCEEEEeccccc
Q 002047 734 YLFLGDYVDRGQHS-----LETITLLLALKVEYPNNVHLIRGNHEA 774 (975)
Q Consensus 734 ~vfLGDyVDRG~~s-----~evl~ll~~lk~~~P~~v~llrGNHE~ 774 (975)
+|..||+++..+.+ ..++.+|-++ + --.+. ||||.
T Consensus 55 ~l~~GD~~~gs~~~~~~~g~~~~~~l~~~----g-~da~~-GNHef 94 (264)
T cd07411 55 LLDGGDTWQGSGEALYTRGQAMVDALNAL----G-VDAMV-GHWEF 94 (264)
T ss_pred EEeCCCccCCChHHhhcCChhHHHHHHhh----C-CeEEe-ccccc
Confidence 45599999876543 2344444443 2 22334 99996
No 182
>PRK01742 tolB translocation protein TolB; Provisional
Probab=76.89 E-value=1.6e+02 Score=34.60 Aligned_cols=140 Identities=18% Similarity=0.179 Sum_probs=65.5
Q ss_pred ccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEe-CCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCC
Q 002047 201 EDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPP 279 (975)
Q Consensus 201 ~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~-~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~ 279 (975)
..+|++|+.+.. -+.+. ..+.. ....... ++++|++....++. .++|.+|+.+. ....+.....
T Consensus 228 ~~i~i~dl~tg~--~~~l~---~~~g~--~~~~~wSPDG~~La~~~~~~g~---~~Iy~~d~~~~--~~~~lt~~~~--- 292 (429)
T PRK01742 228 SQLVVHDLRSGA--RKVVA---SFRGH--NGAPAFSPDGSRLAFASSKDGV---LNIYVMGANGG--TPSQLTSGAG--- 292 (429)
T ss_pred cEEEEEeCCCCc--eEEEe---cCCCc--cCceeECCCCCEEEEEEecCCc---EEEEEEECCCC--CeEeeccCCC---
Confidence 469999997753 34443 22211 1122222 33345544333332 36999999877 6666643221
Q ss_pred CcceeEEEEEeCCe-EEEecCCCCCCCCccceEEeecCCCCeEEEEECCCCCCCCcceeeEEEeCCEEEEEcCcCCCCCc
Q 002047 280 PCMYATASARSDGL-LLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRM 358 (975)
Q Consensus 280 ~r~~~~a~~~~~g~-lyvfGG~~~~~~~l~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v~~~~~L~V~GG~~~~~~~ 358 (975)
.........+++ |++....++. ..+|.++.... .-... .. .. +. ....-+++.+++.+.
T Consensus 293 --~~~~~~wSpDG~~i~f~s~~~g~----~~I~~~~~~~~-~~~~l--~~---~~-~~-~~~SpDG~~ia~~~~------ 352 (429)
T PRK01742 293 --NNTEPSWSPDGQSILFTSDRSGS----PQVYRMSASGG-GASLV--GG---RG-YS-AQISADGKTLVMING------ 352 (429)
T ss_pred --CcCCEEECCCCCEEEEEECCCCC----ceEEEEECCCC-CeEEe--cC---CC-CC-ccCCCCCCEEEEEcC------
Confidence 122233334555 4444333222 35666654332 11111 11 11 11 111224444434331
Q ss_pred cccCCcEEEEECCCCeEEEcc
Q 002047 359 VEDSSSVAVLDTAAGVWCDTK 379 (975)
Q Consensus 359 ~~~~~dv~~yD~~t~~W~~v~ 379 (975)
..++.+|+.+.++..+.
T Consensus 353 ----~~i~~~Dl~~g~~~~lt 369 (429)
T PRK01742 353 ----DNVVKQDLTSGSTEVLS 369 (429)
T ss_pred ----CCEEEEECCCCCeEEec
Confidence 23778999999887654
No 183
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=76.53 E-value=1.4e+02 Score=36.37 Aligned_cols=131 Identities=14% Similarity=0.081 Sum_probs=68.8
Q ss_pred EEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecC-CC-C---CCCcccEEEEeCCcEEEEEcCCCCCCCCC
Q 002047 180 ATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQG-PG-P---GPRYGHVMALVGQRYLMAIGGNDGKRPLA 254 (975)
Q Consensus 180 a~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g-~~-P---~~R~~h~~~~~~~~~lyV~GG~~g~~~~n 254 (975)
-++.++.||+.... ..++.+|..+....|+.-.... .. + ........++.++ +||+.. .+ .
T Consensus 65 Pvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~-~v~v~t-~d-----g 130 (527)
T TIGR03075 65 PLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDG-KVFFGT-LD-----A 130 (527)
T ss_pred CEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECC-EEEEEc-CC-----C
Confidence 34568888886442 3699999998766798653110 00 0 0011122344555 677643 22 3
Q ss_pred cEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCccceEEeecCCC-CeEEEEECC
Q 002047 255 DVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRD-GRWEWAIAP 327 (975)
Q Consensus 255 dv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~d~~~~~~~~~-~~W~w~~~~ 327 (975)
.++++|.++....|+.-..... ......++-++.++++|+...... ...-..++.|+..+. ..|++...+
T Consensus 131 ~l~ALDa~TGk~~W~~~~~~~~--~~~~~tssP~v~~g~Vivg~~~~~-~~~~G~v~AlD~~TG~~lW~~~~~p 201 (527)
T TIGR03075 131 RLVALDAKTGKVVWSKKNGDYK--AGYTITAAPLVVKGKVITGISGGE-FGVRGYVTAYDAKTGKLVWRRYTVP 201 (527)
T ss_pred EEEEEECCCCCEEeeccccccc--ccccccCCcEEECCEEEEeecccc-cCCCcEEEEEECCCCceeEeccCcC
Confidence 6999999999889986432111 001112233456788777432111 112345666655432 245544443
No 184
>PRK04792 tolB translocation protein TolB; Provisional
Probab=76.14 E-value=1.7e+02 Score=34.62 Aligned_cols=142 Identities=16% Similarity=0.192 Sum_probs=72.0
Q ss_pred CcEEEEECCCCcEEEecCCCCCCCCccceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCc
Q 002047 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRY 229 (975)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~ 229 (975)
..+|.+|+.+++-+.+... +..-...+....+++|++..... + ..++|++|+.+.. .+.+... . ...
T Consensus 242 ~~L~~~dl~tg~~~~lt~~---~g~~~~~~wSPDG~~La~~~~~~--g--~~~Iy~~dl~tg~--~~~lt~~---~-~~~ 308 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSF---PGINGAPRFSPDGKKLALVLSKD--G--QPEIYVVDIATKA--LTRITRH---R-AID 308 (448)
T ss_pred cEEEEEECCCCCeEEecCC---CCCcCCeeECCCCCEEEEEEeCC--C--CeEEEEEECCCCC--eEECccC---C-CCc
Confidence 4699999998887776543 11111111111234666554321 1 2579999998763 6665421 1 111
Q ss_pred ccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCccc
Q 002047 230 GHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLAS 309 (975)
Q Consensus 230 ~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~d 309 (975)
......-++++|++....++ ..++|++|+.+. +++.+...+. .........+++.++|.+.... ...
T Consensus 309 ~~p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g--~~~~Lt~~g~-----~~~~~~~SpDG~~l~~~~~~~g---~~~ 375 (448)
T PRK04792 309 TEPSWHPDGKSLIFTSERGG---KPQIYRVNLASG--KVSRLTFEGE-----QNLGGSITPDGRSMIMVNRTNG---KFN 375 (448)
T ss_pred cceEECCCCCEEEEEECCCC---CceEEEEECCCC--CEEEEecCCC-----CCcCeeECCCCCEEEEEEecCC---ceE
Confidence 11111223445655543332 258999999988 7887753222 1112233445554444443322 235
Q ss_pred eEEeecCC
Q 002047 310 AYGLAKHR 317 (975)
Q Consensus 310 ~~~~~~~~ 317 (975)
+|.++...
T Consensus 376 I~~~dl~~ 383 (448)
T PRK04792 376 IARQDLET 383 (448)
T ss_pred EEEEECCC
Confidence 66666543
No 185
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=75.95 E-value=1.5e+02 Score=33.93 Aligned_cols=105 Identities=21% Similarity=0.222 Sum_probs=61.3
Q ss_pred ccCcEEEEECCCCcEEEecCCCCCCCCccceEEEEeCCEEEEEeccC---CCCCccccEEEEEcCCCCCcEEEEEecCCC
Q 002047 148 ATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIG---PAGLSAEDLHVLDLTQQRPRWHRVVVQGPG 224 (975)
Q Consensus 148 ~~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~~~iyv~GG~~---~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~ 224 (975)
..+.++.+|..+++-...-+.| -.|| +.....+..||+.-.+. ..+...+.+.+||+.+.. .-.+++ -.
T Consensus 25 ~~~~v~ViD~~~~~v~g~i~~G--~~P~--~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~-~~~~i~---~p 96 (352)
T TIGR02658 25 ATTQVYTIDGEAGRVLGMTDGG--FLPN--PVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL-PIADIE---LP 96 (352)
T ss_pred cCceEEEEECCCCEEEEEEEcc--CCCc--eeECCCCCEEEEEeccccccccCCCCCEEEEEECccCc-EEeEEc---cC
Confidence 3479999999987655444443 2233 22333345888887632 334457889999999974 122232 11
Q ss_pred CCCC-----cccEEEE-eCCcEEEEEcCCCCCCCCCcEEEEECCCC
Q 002047 225 PGPR-----YGHVMAL-VGQRYLMAIGGNDGKRPLADVWALDTAAK 264 (975)
Q Consensus 225 P~~R-----~~h~~~~-~~~~~lyV~GG~~g~~~~ndv~~yDl~s~ 264 (975)
+.|| +.+...+ -+++.|||.- ...-+.+-++|+.+.
T Consensus 97 ~~p~~~~~~~~~~~~ls~dgk~l~V~n----~~p~~~V~VvD~~~~ 138 (352)
T TIGR02658 97 EGPRFLVGTYPWMTSLTPDNKTLLFYQ----FSPSPAVGVVDLEGK 138 (352)
T ss_pred CCchhhccCccceEEECCCCCEEEEec----CCCCCEEEEEECCCC
Confidence 3334 2223333 3445788762 123578999999887
No 186
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=75.40 E-value=4.9 Score=44.67 Aligned_cols=45 Identities=27% Similarity=0.351 Sum_probs=29.8
Q ss_pred eEEEeccccCCCCChH--------HHHHHHHHhhhcCCC-CEEEEeccccccch
Q 002047 733 DYLFLGDYVDRGQHSL--------ETITLLLALKVEYPN-NVHLIRGNHEAADI 777 (975)
Q Consensus 733 ~~vfLGDyVDRG~~s~--------evl~ll~~lk~~~P~-~v~llrGNHE~~~~ 777 (975)
-+||.||+++.+.... ..-.+...++..+|. .|+.+.||||....
T Consensus 71 fii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~p~ 124 (296)
T cd00842 71 FILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSYPV 124 (296)
T ss_pred EEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCCcc
Confidence 5788999998876431 122233345555554 69999999998654
No 187
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=75.02 E-value=33 Score=39.38 Aligned_cols=194 Identities=18% Similarity=0.200 Sum_probs=99.4
Q ss_pred ccCcEEEEECCCCcEEEecCCCCCCCCccceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCC
Q 002047 148 ATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 227 (975)
Q Consensus 148 ~~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~ 227 (975)
.++++|++|-.-+---++...+ |..|- +++-.+++..|++-= ...+-+++.|+.+-. ...+.|.+-.|
T Consensus 404 ~~N~vYilDe~lnvvGkltGl~--~gERI-YAvRf~gdv~yiVTf-----rqtDPlfviDlsNPe----nPkvlGeLKIP 471 (603)
T COG4880 404 PVNAVYILDENLNVVGKLTGLA--PGERI-YAVRFVGDVLYIVTF-----RQTDPLFVIDLSNPE----NPKVLGELKIP 471 (603)
T ss_pred ccceeEEEcCCCcEEEEEeccC--CCceE-EEEEEeCceEEEEEE-----eccCceEEEEcCCCC----CCceeEEEecC
Confidence 7899999999888777776553 55554 456667888777732 235678999998742 22233444444
Q ss_pred CcccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCCC--cEEEEccCCCCCCCCcceeEEEEEeCC-eEEEecCCCCCC
Q 002047 228 RYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKP--YEWRKLEPEGEGPPPCMYATASARSDG-LLLLCGGRDASS 304 (975)
Q Consensus 228 R~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~--~~W~~v~~~~~~P~~r~~~~a~~~~~g-~lyvfGG~~~~~ 304 (975)
-+..-.--++++.+.=+|-.+|+- .+..||.+... -.-.+..-..-.-+.-+.|||...... .|+..-
T Consensus 472 GfS~YLHpigen~~lGvG~~~g~v---KiSLFdiSdl~~PkEv~~y~l~~~wspvf~dhHAFl~d~~~~ifFlP------ 542 (603)
T COG4880 472 GFSEYLHPIGENRLLGVGAYQGGV---KISLFDISDLAAPKEVSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLP------ 542 (603)
T ss_pred CchhhccccCCCcEEEeecccCCc---eEEEEeccCCCCchhhhheehhhhcchhhhccceeecCCcccEEEec------
Confidence 333333344555555555555432 45556554320 000000000001122356666665432 333321
Q ss_pred CCccceEEeecCCCCeEEEEECCCCCCCCcceeeEEEeCCEEEEEcCcCCCCCccccCCcEEEEECCCCeEEEcccC
Q 002047 305 VPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSV 381 (975)
Q Consensus 305 ~~l~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v~~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 381 (975)
.....+.|....+-+.. .... ...-.--+.++++.+|++|| +.+|+|| .+.|..++..
T Consensus 543 -ay~~gyif~iedg~kl~-k~~e----~k~na~RA~fi~dylY~vg~-----------~ev~~ld--enswe~Vge~ 600 (603)
T COG4880 543 -AYLGGYIFFIEDGSKLR-KRAE----RKLNADRAFFIKDYLYLVGG-----------NEVWKLD--ENSWEVVGEA 600 (603)
T ss_pred -ccCccEEEEEecCceee-ehhh----hcccceeeEEecceEEEecc-----------ceeEEec--cchHhhhhhe
Confidence 12222333332221111 0001 11112236778999999997 3588886 5678777654
No 188
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=74.83 E-value=1e+02 Score=35.60 Aligned_cols=222 Identities=14% Similarity=0.102 Sum_probs=101.7
Q ss_pred cCcEEEEECCCCcEEEecCCCCCCCCccceEEEEeCCEEEEE-eccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCC
Q 002047 149 TADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQ-GGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 227 (975)
Q Consensus 149 ~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~~~iyv~-GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~ 227 (975)
...+|.+|+.+.+-++|.... .....+-..+.-++.+|.+ .+ ..++..|+.+.. =+.+- ..|..
T Consensus 59 ~~nly~lDL~t~~i~QLTdg~--g~~~~g~~~s~~~~~~~Yv~~~--------~~l~~vdL~T~e--~~~vy---~~p~~ 123 (386)
T PF14583_consen 59 NRNLYLLDLATGEITQLTDGP--GDNTFGGFLSPDDRALYYVKNG--------RSLRRVDLDTLE--ERVVY---EVPDD 123 (386)
T ss_dssp S-EEEEEETTT-EEEE---SS---B-TTT-EE-TTSSEEEEEETT--------TEEEEEETTT----EEEEE---E--TT
T ss_pred CcceEEEEcccCEEEECccCC--CCCccceEEecCCCeEEEEECC--------CeEEEEECCcCc--EEEEE---ECCcc
Confidence 347899999999999997641 1222222222223466544 33 367888888753 33443 33433
Q ss_pred CcccEEEEeCCcEEEEEcCC----C--------------CCCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEE
Q 002047 228 RYGHVMALVGQRYLMAIGGN----D--------------GKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASAR 289 (975)
Q Consensus 228 R~~h~~~~~~~~~lyV~GG~----~--------------g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~ 289 (975)
-.+....+.+...-.++|=. + .....+.+...|+.+. +.+.+-..... ..|.-..-
T Consensus 124 ~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG--~~~~v~~~~~w----lgH~~fsP 197 (386)
T PF14583_consen 124 WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG--ERKVVFEDTDW----LGHVQFSP 197 (386)
T ss_dssp EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEESS-----EEEEEEET
T ss_pred cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC--ceeEEEecCcc----ccCcccCC
Confidence 33333333221111222211 0 1223667888899988 77766443331 34444444
Q ss_pred eCCeEEEe---cCCCCCCCCccceEEeecCCCCeEEEEECCCCCCCCcceeeEEEeCCEEEEE-cCcCCCCCccccCCcE
Q 002047 290 SDGLLLLC---GGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVS-GGALGGGRMVEDSSSV 365 (975)
Q Consensus 290 ~~g~lyvf---GG~~~~~~~l~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v~~~~~L~V~-GG~~~~~~~~~~~~dv 365 (975)
.+..+++| |.++. .-..+|.++....+.|. +....+.-..+|--..-+|..+.+ +...+.. ..-|
T Consensus 198 ~dp~li~fCHEGpw~~---Vd~RiW~i~~dg~~~~~---v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~-----~~~i 266 (386)
T PF14583_consen 198 TDPTLIMFCHEGPWDL---VDQRIWTINTDGSNVKK---VHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQ-----DFWI 266 (386)
T ss_dssp TEEEEEEEEE-S-TTT---SS-SEEEEETTS---EE---SS---TTEEEEEEEE-TTSS-EEEEEEETTT-------EEE
T ss_pred CCCCEEEEeccCCcce---eceEEEEEEcCCCccee---eecCCCCcccccccccCCCCEEEEEeecCCCC-----ceEE
Confidence 45555555 33332 22468888766554433 222223445666666656543333 3322221 2238
Q ss_pred EEEECCCCeEEEcccCcCCCCCCCCccccCCCCCccCCCccceeEEEEECCEEEEEcCCC
Q 002047 366 AVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLR 425 (975)
Q Consensus 366 ~~yD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~LyV~GG~~ 425 (975)
..||++|..=+.+..+ +++.|-....+++|+|-=|.+
T Consensus 267 ~~~d~~t~~~~~~~~~-----------------------p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 267 AGYDPDTGERRRLMEM-----------------------PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEE-TTT--EEEEEEE------------------------SEEEEEE-TTSSEEEEEE--
T ss_pred EeeCCCCCCceEEEeC-----------------------CceeeeEEcCCCCEEEecCCC
Confidence 8899998854445444 678888888899998875543
No 189
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=74.74 E-value=6.1 Score=43.30 Aligned_cols=68 Identities=21% Similarity=0.189 Sum_probs=47.7
Q ss_pred CCEEEEecCCCC--HHHHHHHHHHhCCCCCCCCccceeEEEeccccCCC-CChHHHHHHHHHhhhcCCCCEEEEeccccc
Q 002047 698 APIKIFGDLHGQ--FGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRG-QHSLETITLLLALKVEYPNNVHLIRGNHEA 774 (975)
Q Consensus 698 ~~i~vvGDiHG~--~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG-~~s~evl~ll~~lk~~~P~~v~llrGNHE~ 774 (975)
++|.++|||=|. ...|.+.|..+......+ -+|..||...-| --+-+++..|+.+-+ .++.+ |||+.
T Consensus 1 m~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D-----~vIaNgEn~~gG~Gi~~~~~~~L~~~Gv----DviT~-GNH~~ 70 (266)
T TIGR00282 1 IKFLFIGDVYGKAGRKIVKNNLPQLKSKYQAD-----LVIANGENTTHGKGLTLKIYEFLKQSGV----NYITM-GNHTW 70 (266)
T ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHhCCCC-----EEEEcCcccCCCCCCCHHHHHHHHhcCC----CEEEc-cchhc
Confidence 578999999999 566777777665332221 344579999766 457888888887643 46655 99998
Q ss_pred c
Q 002047 775 A 775 (975)
Q Consensus 775 ~ 775 (975)
-
T Consensus 71 D 71 (266)
T TIGR00282 71 F 71 (266)
T ss_pred c
Confidence 4
No 190
>PRK05137 tolB translocation protein TolB; Provisional
Probab=73.62 E-value=1.9e+02 Score=33.95 Aligned_cols=194 Identities=14% Similarity=0.101 Sum_probs=90.7
Q ss_pred CcEEEEECCCCcEEEecCCCCCCCCccceEEEE-eCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCC
Q 002047 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATA-VGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPR 228 (975)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~-~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R 228 (975)
..+|.+|+.++..+.+... +. ........ .+++|++..... + ..++|++|+.+.. ...+. ..+..
T Consensus 226 ~~i~~~dl~~g~~~~l~~~---~g-~~~~~~~SPDG~~la~~~~~~--g--~~~Iy~~d~~~~~--~~~Lt---~~~~~- 291 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNF---PG-MTFAPRFSPDGRKVVMSLSQG--G--NTDIYTMDLRSGT--TTRLT---DSPAI- 291 (435)
T ss_pred CEEEEEECCCCcEEEeecC---CC-cccCcEECCCCCEEEEEEecC--C--CceEEEEECCCCc--eEEcc---CCCCc-
Confidence 5799999999988877643 11 11111222 233555443321 1 3579999998763 45543 11111
Q ss_pred cccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCcc
Q 002047 229 YGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLA 308 (975)
Q Consensus 229 ~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~ 308 (975)
.......-++++|++.....+ ...+|++|+... ..+.+..... .........+++.+++...... ..
T Consensus 292 ~~~~~~spDG~~i~f~s~~~g---~~~Iy~~d~~g~--~~~~lt~~~~-----~~~~~~~SpdG~~ia~~~~~~~---~~ 358 (435)
T PRK05137 292 DTSPSYSPDGSQIVFESDRSG---SPQLYVMNADGS--NPRRISFGGG-----RYSTPVWSPRGDLIAFTKQGGG---QF 358 (435)
T ss_pred cCceeEcCCCCEEEEEECCCC---CCeEEEEECCCC--CeEEeecCCC-----cccCeEECCCCCEEEEEEcCCC---ce
Confidence 111121223434554332222 257999999877 6666643211 1222233345544444332221 13
Q ss_pred ceEEeecCCCCeEEEEECCCCCCCCcceeeEEEeCCEEEEEcCcCCCCCccccCCcEEEEECCCCeEEEcc
Q 002047 309 SAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTK 379 (975)
Q Consensus 309 d~~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v~~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 379 (975)
.++.++.... ...... .+ .....-...-+++.+++-....... ....+|++|+....-..+.
T Consensus 359 ~i~~~d~~~~-~~~~lt-~~----~~~~~p~~spDG~~i~~~~~~~~~~---~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 359 SIGVMKPDGS-GERILT-SG----FLVEGPTWAPNGRVIMFFRQTPGSG---GAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred EEEEEECCCC-ceEecc-CC----CCCCCCeECCCCCEEEEEEccCCCC---CcceEEEEECCCCceEEcc
Confidence 4555554322 222111 11 1111112222455554533322110 0246999999887766654
No 191
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=73.07 E-value=1.2e+02 Score=31.39 Aligned_cols=152 Identities=13% Similarity=0.041 Sum_probs=74.4
Q ss_pred EEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEec-CCCCCCCcccEEEEeCC-cEEEEEcCCCCCCCCCcE
Q 002047 179 VATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQ-GPGPGPRYGHVMALVGQ-RYLMAIGGNDGKRPLADV 256 (975)
Q Consensus 179 sa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~-g~~P~~R~~h~~~~~~~-~~lyV~GG~~g~~~~ndv 256 (975)
+++...+++|+|-|. .+|+++.......-..+... ..+|. .=.++....+ +++|+|-| +..
T Consensus 11 A~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p~--~IDAa~~~~~~~~~yfFkg-------~~y 73 (194)
T cd00094 11 AVTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLPS--PVDAAFERPDTGKIYFFKG-------DKY 73 (194)
T ss_pred eEEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCCC--CccEEEEECCCCEEEEECC-------CEE
Confidence 344456899999773 57777754211011111100 01232 2223333332 58999976 468
Q ss_pred EEEECCCCCcEEE---EccCCCCCCCCcceeEEEEEe-CCeEEEecCCCCCCCCccceEEeecCCCC---------eEEE
Q 002047 257 WALDTAAKPYEWR---KLEPEGEGPPPCMYATASARS-DGLLLLCGGRDASSVPLASAYGLAKHRDG---------RWEW 323 (975)
Q Consensus 257 ~~yDl~s~~~~W~---~v~~~~~~P~~r~~~~a~~~~-~g~lyvfGG~~~~~~~l~d~~~~~~~~~~---------~W~w 323 (975)
|+||..+. .+. .+...+.++.+....+|.... ++++|+|.|. ..|.|+..... .-.|
T Consensus 74 w~~~~~~~--~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~--------~y~ry~~~~~~v~~~yP~~i~~~w 143 (194)
T cd00094 74 WVYTGKNL--EPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD--------KYWRYDEKTQKMDPGYPKLIETDF 143 (194)
T ss_pred EEEcCccc--ccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC--------EEEEEeCCCccccCCCCcchhhcC
Confidence 88887642 221 122112211112334444444 6899999872 23444432110 0012
Q ss_pred EECCCCCCCCcceeeEEEeC-CEEEEEcCcCCCCCccccCCcEEEEECCCCe
Q 002047 324 AIAPGVSPSPRYQHAAVFVN-ARLHVSGGALGGGRMVEDSSSVAVLDTAAGV 374 (975)
Q Consensus 324 ~~~~g~~P~~R~~hs~v~~~-~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~ 374 (975)
. +. |.. . .++.... +++|+|-| +..|+||..+.+
T Consensus 144 ~---g~-p~~-i-daa~~~~~~~~yfF~g-----------~~y~~~d~~~~~ 178 (194)
T cd00094 144 P---GV-PDK-V-DAAFRWLDGYYYFFKG-----------DQYWRFDPRSKE 178 (194)
T ss_pred C---Cc-CCC-c-ceeEEeCCCcEEEEEC-----------CEEEEEeCccce
Confidence 1 11 221 2 2333344 88999865 348999998876
No 192
>PF08321 PPP5: PPP5 TPR repeat region; InterPro: IPR013235 This domain is specific to the PPP5 subfamily of serine/threonine phosphatases.; GO: 0004722 protein serine/threonine phosphatase activity, 0046872 metal ion binding; PDB: 3ICF_B 3H60_B 3H63_A 3H66_A 3H62_B 1A17_A 1S95_B 3H69_A 3H68_D 3H64_D ....
Probab=72.76 E-value=7.5 Score=35.60 Aligned_cols=41 Identities=15% Similarity=0.258 Sum_probs=31.3
Q ss_pred hhHHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeee
Q 002047 646 SVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQL 696 (975)
Q Consensus 646 ~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~~~~~ep~~l~l 696 (975)
++++.+|+.+-+.+ .|....+..|+.++.++|+++|++++|
T Consensus 55 efv~~mie~FK~~K----------~Lhkkyv~~Il~~~~~llk~~PslVeI 95 (95)
T PF08321_consen 55 EFVKAMIEWFKNQK----------KLHKKYVYQILLEAKKLLKQLPSLVEI 95 (95)
T ss_dssp HHHHHHHHHHHCT--------------HHHHHHHHHHHHHHHHTS-SEEEE
T ss_pred HHHHHHHHHHHhCC----------CccHHHHHHHHHHHHHHHHhCcCccCC
Confidence 56788888876543 477888999999999999999999985
No 193
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=72.69 E-value=1.4e+02 Score=31.99 Aligned_cols=92 Identities=22% Similarity=0.342 Sum_probs=48.1
Q ss_pred CcEEEEECCCCcEEEecCCCCCCCCccceEEEEe-C-CEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCC
Q 002047 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAV-G-TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 227 (975)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~-~-~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~ 227 (975)
+.++.||+.+++-...-..+ ..++ +++.. + ..+|+.++. .+.+++||+.+.. .......+ ..+
T Consensus 11 ~~v~~~d~~t~~~~~~~~~~--~~~~---~l~~~~dg~~l~~~~~~------~~~v~~~d~~~~~--~~~~~~~~--~~~ 75 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFPVG--QRPR---GITLSKDGKLLYVCASD------SDTIQVIDLATGE--VIGTLPSG--PDP 75 (300)
T ss_pred CEEEEEECCCCceEEEEECC--CCCC---ceEECCCCCEEEEEECC------CCeEEEEECCCCc--EEEeccCC--CCc
Confidence 37888998877643332221 1122 23322 3 366777653 3568899988753 33211111 111
Q ss_pred CcccEEEEe-CCcEEEEEcCCCCCCCCCcEEEEECCCC
Q 002047 228 RYGHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAAK 264 (975)
Q Consensus 228 R~~h~~~~~-~~~~lyV~GG~~g~~~~ndv~~yDl~s~ 264 (975)
..++.. +++.+|+.++.+ +.+..||+.+.
T Consensus 76 ---~~~~~~~~g~~l~~~~~~~-----~~l~~~d~~~~ 105 (300)
T TIGR03866 76 ---ELFALHPNGKILYIANEDD-----NLVTVIDIETR 105 (300)
T ss_pred ---cEEEECCCCCEEEEEcCCC-----CeEEEEECCCC
Confidence 223333 344577765433 36899999876
No 194
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=71.85 E-value=5.6 Score=52.99 Aligned_cols=66 Identities=20% Similarity=0.206 Sum_probs=39.5
Q ss_pred CEEEEecCCCCHHH---HHHHHHHhCCCCCCCCccceeEEEeccccCCCCCh-----HHHHHHHHHhhhcCCCCEEEEec
Q 002047 699 PIKIFGDLHGQFGD---LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS-----LETITLLLALKVEYPNNVHLIRG 770 (975)
Q Consensus 699 ~i~vvGDiHG~~~~---L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s-----~evl~ll~~lk~~~P~~v~llrG 770 (975)
.|+.+.|+||.+.. +..+++...-...+ .-+|..||+++..+.+ ..++.+|-++ .--++..|
T Consensus 662 ~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~~~-----~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~l-----g~d~~~~G 731 (1163)
T PRK09419 662 TILHTNDFHGHLDGAAKRVTKIKEVKEENPN-----TILVDAGDVYQGSLYSNLLKGLPVLKMMKEM-----GYDASTFG 731 (1163)
T ss_pred EEEEEeecccCCCCHHHHHHHHHHHHhhCCC-----eEEEecCCCCCCcchhhhcCChHHHHHHhCc-----CCCEEEec
Confidence 47889999998643 44445444211111 1233389999987644 2445555554 23355899
Q ss_pred cccc
Q 002047 771 NHEA 774 (975)
Q Consensus 771 NHE~ 774 (975)
|||.
T Consensus 732 NHEf 735 (1163)
T PRK09419 732 NHEF 735 (1163)
T ss_pred cccc
Confidence 9997
No 195
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=71.49 E-value=8.7 Score=42.52 Aligned_cols=66 Identities=21% Similarity=0.227 Sum_probs=36.7
Q ss_pred CEEEEecCCCCHH---------------------HHHHHHHHhCCCCCCCCccceeEEEeccccCCCCCh-----HHHHH
Q 002047 699 PIKIFGDLHGQFG---------------------DLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS-----LETIT 752 (975)
Q Consensus 699 ~i~vvGDiHG~~~---------------------~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s-----~evl~ 752 (975)
.|+-+.|+||++. .+..+++....... ..-+|..||+++..+.+ ..++.
T Consensus 2 ~il~tnD~Hg~l~~~~~~~~~~~~~~~~~~gG~ar~~~~v~~~r~~~~-----~~l~ld~GD~~~gs~~~~~~~g~~~~~ 76 (281)
T cd07409 2 TILHTNDHHSRFEETNPSGGVKDAATEKCYGGFARVATLVKELRAENP-----NVLFLNAGDAFQGTLWYTLYKGNADAE 76 (281)
T ss_pred EEEEeccccccccccCccccccccccccccCCHHHHHHHHHHHHhcCC-----CEEEEeCCCCCCCcchhhhcCChHHHH
Confidence 3678899998753 34445555432111 11344589999876532 33344
Q ss_pred HHHHhhhcCCCCEEEEeccccc
Q 002047 753 LLLALKVEYPNNVHLIRGNHEA 774 (975)
Q Consensus 753 ll~~lk~~~P~~v~llrGNHE~ 774 (975)
+|-++. -.+. ..||||.
T Consensus 77 ~ln~~g----~D~~-~lGNHef 93 (281)
T cd07409 77 FMNLLG----YDAM-TLGNHEF 93 (281)
T ss_pred HHHhcC----CCEE-Eeccccc
Confidence 444432 1344 4599996
No 196
>PRK00178 tolB translocation protein TolB; Provisional
Probab=71.45 E-value=2.1e+02 Score=33.45 Aligned_cols=146 Identities=18% Similarity=0.205 Sum_probs=70.9
Q ss_pred ccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEe-CCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCC
Q 002047 201 EDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPP 279 (975)
Q Consensus 201 ~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~-~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~ 279 (975)
..+|++|+.+.. -+.+. ..+. ........ ++++|++..-.++ ..++|++|+.+. .++.+.....
T Consensus 223 ~~l~~~~l~~g~--~~~l~---~~~g--~~~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~--~~~~lt~~~~--- 287 (430)
T PRK00178 223 PRIFVQNLDTGR--REQIT---NFEG--LNGAPAWSPDGSKLAFVLSKDG---NPEIYVMDLASR--QLSRVTNHPA--- 287 (430)
T ss_pred CEEEEEECCCCC--EEEcc---CCCC--CcCCeEECCCCCEEEEEEccCC---CceEEEEECCCC--CeEEcccCCC---
Confidence 479999998764 44443 1111 11122222 3335554432222 258999999998 7777654321
Q ss_pred CcceeEEEEEeCC-eEEEecCCCCCCCCccceEEeecCCCCeEEEEECCCCCCCCcceeeEE-EeC-CEEEEEcCcCCCC
Q 002047 280 PCMYATASARSDG-LLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAV-FVN-ARLHVSGGALGGG 356 (975)
Q Consensus 280 ~r~~~~a~~~~~g-~lyvfGG~~~~~~~l~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v-~~~-~~L~V~GG~~~~~ 356 (975)
.........++ +|++.....+ ...+|.++... +.++.....+ .+..... .-+ ..|++.... ..
T Consensus 288 --~~~~~~~spDg~~i~f~s~~~g----~~~iy~~d~~~-g~~~~lt~~~-----~~~~~~~~Spdg~~i~~~~~~-~~- 353 (430)
T PRK00178 288 --IDTEPFWGKDGRTLYFTSDRGG----KPQIYKVNVNG-GRAERVTFVG-----NYNARPRLSADGKTLVMVHRQ-DG- 353 (430)
T ss_pred --CcCCeEECCCCCEEEEEECCCC----CceEEEEECCC-CCEEEeecCC-----CCccceEECCCCCEEEEEEcc-CC-
Confidence 11122233344 4554432222 23567665443 3333322111 1111122 223 344444322 11
Q ss_pred CccccCCcEEEEECCCCeEEEccc
Q 002047 357 RMVEDSSSVAVLDTAAGVWCDTKS 380 (975)
Q Consensus 357 ~~~~~~~dv~~yD~~t~~W~~v~~ 380 (975)
...++.+|+.+..++.+..
T Consensus 354 -----~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 354 -----NFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred -----ceEEEEEECCCCCEEEccC
Confidence 2359999999998877653
No 197
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=71.39 E-value=97 Score=36.07 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=19.2
Q ss_pred EEeCCEEEEEcCcCCCCCccccCCcEEEEECCCCeE
Q 002047 340 VFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVW 375 (975)
Q Consensus 340 v~~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~W 375 (975)
+..++.+++.|+.++. +.+.|+.+.+-
T Consensus 285 is~DgtlLlSGd~dg~---------VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 285 ISTDGTLLLSGDEDGK---------VCVWDIYSKQC 311 (476)
T ss_pred EecCccEEEeeCCCCC---------EEEEecchHHH
Confidence 3347899999987543 77788777654
No 198
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=70.65 E-value=1.8e+02 Score=32.44 Aligned_cols=97 Identities=10% Similarity=0.078 Sum_probs=47.0
Q ss_pred CcEEEEECCC-CcEEEecCCCCCCCCccceEEEEe--CCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCC
Q 002047 150 ADVHCYDVLT-NKWSRITPFGEPPTPRAAHVATAV--GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPG 226 (975)
Q Consensus 150 ~dv~~yD~~t-~~W~~l~~~g~~P~pR~~hsa~~~--~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~ 226 (975)
+.+..||+.+ .+++.+... +..-..+.++.. ++.||+.+.. ...+..|++... .+++.+... +.+.
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~---~~~~~~~~l~~spd~~~lyv~~~~------~~~i~~~~~~~~-g~l~~~~~~-~~~~ 80 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVV---DVPGQVQPMVISPDKRHLYVGVRP------EFRVLSYRIADD-GALTFAAES-PLPG 80 (330)
T ss_pred CCEEEEEECCCCceeeeeEE---ecCCCCccEEECCCCCEEEEEECC------CCcEEEEEECCC-CceEEeeee-cCCC
Confidence 3567778753 566665443 222222233332 3466665431 256777887632 246554421 1111
Q ss_pred CCcccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCC
Q 002047 227 PRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAA 263 (975)
Q Consensus 227 ~R~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s 263 (975)
...|.+..-+++.||+..-. -+.+.+||+.+
T Consensus 81 -~p~~i~~~~~g~~l~v~~~~-----~~~v~v~~~~~ 111 (330)
T PRK11028 81 -SPTHISTDHQGRFLFSASYN-----ANCVSVSPLDK 111 (330)
T ss_pred -CceEEEECCCCCEEEEEEcC-----CCeEEEEEECC
Confidence 11222222245467776422 25677787754
No 199
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=70.21 E-value=27 Score=33.54 Aligned_cols=84 Identities=13% Similarity=0.151 Sum_probs=54.7
Q ss_pred eCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCccceEEeec
Q 002047 236 VGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAK 315 (975)
Q Consensus 236 ~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~d~~~~~~ 315 (975)
+++ .+|-..-. .....+-+.+||+.+. +|+.+..+ ..+.........+..+|+|-++.-........-++|.+.+
T Consensus 4 inG-vly~~a~~-~~~~~~~IvsFDv~~E--~f~~i~~P-~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD 78 (129)
T PF08268_consen 4 ING-VLYWLAWS-EDSDNNVIVSFDVRSE--KFRFIKLP-EDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLED 78 (129)
T ss_pred ECc-EEEeEEEE-CCCCCcEEEEEEcCCc--eEEEEEee-eeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeec
Confidence 344 56666544 3344678999999999 88877654 1122234555566678888886554333224578999988
Q ss_pred CCCCeEEEE
Q 002047 316 HRDGRWEWA 324 (975)
Q Consensus 316 ~~~~~W~w~ 324 (975)
.....|...
T Consensus 79 ~~k~~Wsk~ 87 (129)
T PF08268_consen 79 YEKQEWSKK 87 (129)
T ss_pred cccceEEEE
Confidence 877788744
No 200
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=69.85 E-value=9.1 Score=38.79 Aligned_cols=41 Identities=29% Similarity=0.317 Sum_probs=29.5
Q ss_pred eEEEecccc--CCCCChHHHHHHHHHhhhcCCCCEEEEeccccccch
Q 002047 733 DYLFLGDYV--DRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADI 777 (975)
Q Consensus 733 ~~vfLGDyV--DRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~ 777 (975)
.++.-||+- -|=++..+=+.+|-+| |..=+++|||||.+.-
T Consensus 46 iVllpGDiSWaM~l~ea~~Dl~~i~~L----PG~K~m~rGNHDYWw~ 88 (230)
T COG1768 46 IVLLPGDISWAMRLEEAEEDLRFIGDL----PGTKYMIRGNHDYWWS 88 (230)
T ss_pred EEEecccchhheechhhhhhhhhhhcC----CCcEEEEecCCccccc
Confidence 466678875 3555566666666665 7889999999998643
No 201
>PRK02889 tolB translocation protein TolB; Provisional
Probab=69.06 E-value=2.4e+02 Score=33.14 Aligned_cols=191 Identities=14% Similarity=0.112 Sum_probs=85.7
Q ss_pred CcEEEEECCCCcEEEecCCCCCCCCccceEEEEeCC-EEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCC
Q 002047 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGT-MVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPR 228 (975)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~~-~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R 228 (975)
..+|..|......+.+.... .+-.. -...-++ +|++. .... ....+|++|+.+.. =..+. ..+..
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~---~~v~~-p~wSPDG~~la~~-s~~~---~~~~I~~~dl~~g~--~~~l~---~~~g~- 241 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSP---EPIIS-PAWSPDGTKLAYV-SFES---KKPVVYVHDLATGR--RRVVA---NFKGS- 241 (427)
T ss_pred cEEEEECCCCCCceEeccCC---CCccc-ceEcCCCCEEEEE-EccC---CCcEEEEEECCCCC--EEEee---cCCCC-
Confidence 46777777655555543321 11111 1122233 44433 3211 12469999998763 33333 12211
Q ss_pred cccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCcc
Q 002047 229 YGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLA 308 (975)
Q Consensus 229 ~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~ 308 (975)
.......-++++|++....++ ..++|.+|+.+. ..+++..... .........+|+.++|..... + ..
T Consensus 242 ~~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~--~~~~lt~~~~-----~~~~~~wSpDG~~l~f~s~~~-g--~~ 308 (427)
T PRK02889 242 NSAPAWSPDGRTLAVALSRDG---NSQIYTVNADGS--GLRRLTQSSG-----IDTEPFFSPDGRSIYFTSDRG-G--AP 308 (427)
T ss_pred ccceEECCCCCEEEEEEccCC---CceEEEEECCCC--CcEECCCCCC-----CCcCeEEcCCCCEEEEEecCC-C--Cc
Confidence 111121223435655444333 368999999877 5666643221 111223344555444432111 1 23
Q ss_pred ceEEeecCCCCeEEEEECCCCCCCCcceeeEEE-eCCEEEEEcCcCCCCCccccCCcEEEEECCCCeEEEcc
Q 002047 309 SAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVF-VNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTK 379 (975)
Q Consensus 309 d~~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v~-~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 379 (975)
.+|.++.... ..+-....+ .+.....+ -+++.+++....+. ...++++|+.+.+...+.
T Consensus 309 ~Iy~~~~~~g-~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~s~~~g------~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 309 QIYRMPASGG-AAQRVTFTG-----SYNTSPRISPDGKLLAYISRVGG------AFKLYVQDLATGQVTALT 368 (427)
T ss_pred EEEEEECCCC-ceEEEecCC-----CCcCceEECCCCCEEEEEEccCC------cEEEEEEECCCCCeEEcc
Confidence 5666654332 222222111 11112222 24443334332221 235999999998877664
No 202
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=67.30 E-value=7.8 Score=43.29 Aligned_cols=73 Identities=25% Similarity=0.426 Sum_probs=44.9
Q ss_pred CCEEEEecCCCCHHHHHHHHH---HhCCCCCCCCccceeEEEeccccC-CCCChHHHHH------HHHH------hhhcC
Q 002047 698 APIKIFGDLHGQFGDLMRLFD---EYGSPSTAGDIAYIDYLFLGDYVD-RGQHSLETIT------LLLA------LKVEY 761 (975)
Q Consensus 698 ~~i~vvGDiHG~~~~L~~ll~---~~g~~~~~~~~~~~~~vfLGDyVD-RG~~s~evl~------ll~~------lk~~~ 761 (975)
++|.|-|=.||+++.+-+-+. +.|-.+.+ -+|++||+=. |...-+.+|. -|.. =.+..
T Consensus 1 MrIaVqGCcHG~Ld~iYkti~~~ek~~~tkVD------LLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~A 74 (456)
T KOG2863|consen 1 MRIAVQGCCHGELDNIYKTISLIEKRGNTKVD------LLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKA 74 (456)
T ss_pred CceeeecccchhHHHHHHHHHHHHHcCCCCcc------EEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccC
Confidence 578999999999999985444 44433333 6888999864 3322222221 1111 12344
Q ss_pred CCCEEEEeccccccc
Q 002047 762 PNNVHLIRGNHEAAD 776 (975)
Q Consensus 762 P~~v~llrGNHE~~~ 776 (975)
|=--++|=||||.++
T Consensus 75 PVlTIFIGGNHEAsn 89 (456)
T KOG2863|consen 75 PVLTIFIGGNHEASN 89 (456)
T ss_pred ceeEEEecCchHHHH
Confidence 545578999999975
No 203
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=67.24 E-value=1.1e+02 Score=29.25 Aligned_cols=86 Identities=13% Similarity=0.183 Sum_probs=53.3
Q ss_pred EEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEeCCcEEEEEcCCCCC-CCCCcEEEE
Q 002047 181 TAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGK-RPLADVWAL 259 (975)
Q Consensus 181 ~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~~~~~lyV~GG~~g~-~~~ndv~~y 259 (975)
+.+++.+|...-. ......-+..||+.+.+ |+.+..-............+.+++ +|-++.-.... ...-++|++
T Consensus 2 icinGvly~~a~~--~~~~~~~IvsFDv~~E~--f~~i~~P~~~~~~~~~~~L~~~~G-~L~~v~~~~~~~~~~~~iWvL 76 (129)
T PF08268_consen 2 ICINGVLYWLAWS--EDSDNNVIVSFDVRSEK--FRFIKLPEDPYSSDCSSTLIEYKG-KLALVSYNDQGEPDSIDIWVL 76 (129)
T ss_pred EEECcEEEeEEEE--CCCCCcEEEEEEcCCce--EEEEEeeeeeccccCccEEEEeCC-eEEEEEecCCCCcceEEEEEe
Confidence 3466777766554 22335678899999975 887752111234556667777777 66666543322 234589998
Q ss_pred -ECCCCCcEEEEccC
Q 002047 260 -DTAAKPYEWRKLEP 273 (975)
Q Consensus 260 -Dl~s~~~~W~~v~~ 273 (975)
|..+. .|.+...
T Consensus 77 eD~~k~--~Wsk~~~ 89 (129)
T PF08268_consen 77 EDYEKQ--EWSKKHI 89 (129)
T ss_pred eccccc--eEEEEEE
Confidence 45566 8987643
No 204
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=66.88 E-value=1.6e+02 Score=30.42 Aligned_cols=105 Identities=13% Similarity=0.156 Sum_probs=53.5
Q ss_pred CEEEEEeccCCCCCccccEEEEEcCCCCCcE-EEEEecCCCCC--CCcccEEEEeC-CcEEEEEcCCCCCCCCCcEEEEE
Q 002047 185 TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRW-HRVVVQGPGPG--PRYGHVMALVG-QRYLMAIGGNDGKRPLADVWALD 260 (975)
Q Consensus 185 ~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W-~~v~~~g~~P~--~R~~h~~~~~~-~~~lyV~GG~~g~~~~ndv~~yD 260 (975)
+++|+|=| +..|+|+..+..... ..+... ..|. ..-. ++.... ++++|+|-| +..|+||
T Consensus 63 ~~~yfFkg--------~~yw~~~~~~~~~~~Pk~i~~~-~~~~~~~~iD-AA~~~~~~~~~yfFkg-------~~y~ry~ 125 (194)
T cd00094 63 GKIYFFKG--------DKYWVYTGKNLEPGYPKPISDL-GFPPTVKQID-AALRWPDNGKTYFFKG-------DKYWRYD 125 (194)
T ss_pred CEEEEECC--------CEEEEEcCcccccCCCcchhhc-CCCCCCCCcc-EEEEEcCCCEEEEEeC-------CEEEEEe
Confidence 68999966 368888865421011 111110 1221 2222 333343 458999987 5688998
Q ss_pred CCCCCcEEEE-----ccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCccceEEeecCC
Q 002047 261 TAAKPYEWRK-----LEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHR 317 (975)
Q Consensus 261 l~s~~~~W~~-----v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~d~~~~~~~~ 317 (975)
..++ +... +...-.. .+....+|....++++|+|-| +..|.|+...
T Consensus 126 ~~~~--~v~~~yP~~i~~~w~g-~p~~idaa~~~~~~~~yfF~g--------~~y~~~d~~~ 176 (194)
T cd00094 126 EKTQ--KMDPGYPKLIETDFPG-VPDKVDAAFRWLDGYYYFFKG--------DQYWRFDPRS 176 (194)
T ss_pred CCCc--cccCCCCcchhhcCCC-cCCCcceeEEeCCCcEEEEEC--------CEEEEEeCcc
Confidence 8665 2210 1100000 112234455555589999976 3466666553
No 205
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=66.59 E-value=6.5 Score=45.12 Aligned_cols=40 Identities=25% Similarity=0.407 Sum_probs=34.4
Q ss_pred eEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccccch
Q 002047 733 DYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADI 777 (975)
Q Consensus 733 ~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~ 777 (975)
++=.+||+-||||++-.+++-|..+ ..+-+-.||||-.++
T Consensus 193 hLHiVGDIyDRGP~pd~Imd~L~~y-----hsvDiQWGNHDilWm 232 (648)
T COG3855 193 HLHIVGDIYDRGPYPDKIMDTLINY-----HSVDIQWGNHDILWM 232 (648)
T ss_pred heeeecccccCCCCchHHHHHHhhc-----ccccccccCcceEEe
Confidence 5667999999999999999999876 478888999997654
No 206
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=63.35 E-value=2.2e+02 Score=30.70 Aligned_cols=156 Identities=21% Similarity=0.283 Sum_probs=81.1
Q ss_pred CcEEEecCCC--CCCCCccceEEEEe--CCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEE
Q 002047 160 NKWSRITPFG--EPPTPRAAHVATAV--GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMAL 235 (975)
Q Consensus 160 ~~W~~l~~~g--~~P~pR~~hsa~~~--~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~ 235 (975)
..|+...++- ..+.|-.+ ++.+. .+.|+..||- ..+|..|+++.+ .++.- . -..-|-|+.+.
T Consensus 99 ~lwe~~~P~~~~~~evPeIN-am~ldP~enSi~~AgGD-------~~~y~~dlE~G~--i~r~~-r---GHtDYvH~vv~ 164 (325)
T KOG0649|consen 99 RLWEVKIPMQVDAVEVPEIN-AMWLDPSENSILFAGGD-------GVIYQVDLEDGR--IQREY-R---GHTDYVHSVVG 164 (325)
T ss_pred hhhhhcCccccCcccCCccc-eeEeccCCCcEEEecCC-------eEEEEEEecCCE--EEEEE-c---CCcceeeeeee
Confidence 4577666552 12333322 33333 5688888873 468999999874 44432 1 23446676665
Q ss_pred eCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEc-cCCCCCCCCcc---e-eEEEEEeCCeEEEecCCCCCCCCccce
Q 002047 236 VGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKL-EPEGEGPPPCM---Y-ATASARSDGLLLLCGGRDASSVPLASA 310 (975)
Q Consensus 236 ~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v-~~~~~~P~~r~---~-~~a~~~~~g~lyvfGG~~~~~~~l~d~ 310 (975)
-+.+-=++-|+.|| .+-.+|+++. +-.++ .+... |.-.| . --++...+..-+++||- +...+
T Consensus 165 R~~~~qilsG~EDG-----tvRvWd~kt~--k~v~~ie~yk~-~~~lRp~~g~wigala~~edWlvCGgG-----p~lsl 231 (325)
T KOG0649|consen 165 RNANGQILSGAEDG-----TVRVWDTKTQ--KHVSMIEPYKN-PNLLRPDWGKWIGALAVNEDWLVCGGG-----PKLSL 231 (325)
T ss_pred cccCcceeecCCCc-----cEEEEecccc--ceeEEeccccC-hhhcCcccCceeEEEeccCceEEecCC-----CceeE
Confidence 33333455676666 5677888887 55443 33322 21112 1 12334445555666663 22345
Q ss_pred EEeecCCCCeEEEEECCCCCCCCcceeeEEEeCCEEEEEc
Q 002047 311 YGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSG 350 (975)
Q Consensus 311 ~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v~~~~~L~V~G 350 (975)
|.+..... + .+ .|.|-..|-+.++++.+++.|
T Consensus 232 whLrsse~---t--~v---fpipa~v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 232 WHLRSSES---T--CV---FPIPARVHLVDFVDDCVLIGG 263 (325)
T ss_pred EeccCCCc---e--EE---EecccceeEeeeecceEEEec
Confidence 65533322 1 11 234444555666777776655
No 207
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=62.28 E-value=92 Score=34.09 Aligned_cols=92 Identities=18% Similarity=0.169 Sum_probs=61.0
Q ss_pred CcEEEEECCCCcEEEecCCCCCCCCccceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCc
Q 002047 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRY 229 (975)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~ 229 (975)
+.+..||+.+++-...... |..-.+-+++.++++||..== .....++||..+. ..+. ..+.+..
T Consensus 68 S~l~~~d~~tg~~~~~~~l---~~~~FgEGit~~~d~l~qLTW------k~~~~f~yd~~tl----~~~~---~~~y~~E 131 (264)
T PF05096_consen 68 SSLRKVDLETGKVLQSVPL---PPRYFGEGITILGDKLYQLTW------KEGTGFVYDPNTL----KKIG---TFPYPGE 131 (264)
T ss_dssp EEEEEEETTTSSEEEEEE----TTT--EEEEEEETTEEEEEES------SSSEEEEEETTTT----EEEE---EEE-SSS
T ss_pred EEEEEEECCCCcEEEEEEC---CccccceeEEEECCEEEEEEe------cCCeEEEEccccc----eEEE---EEecCCc
Confidence 4788999999986665554 566678899999999998832 2456889999874 3443 3344568
Q ss_pred ccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCC
Q 002047 230 GHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAK 264 (975)
Q Consensus 230 ~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~ 264 (975)
|-++|..++ .||+--| .+.++.+|+.+.
T Consensus 132 GWGLt~dg~-~Li~SDG------S~~L~~~dP~~f 159 (264)
T PF05096_consen 132 GWGLTSDGK-RLIMSDG------SSRLYFLDPETF 159 (264)
T ss_dssp --EEEECSS-CEEEE-S------SSEEEEE-TTT-
T ss_pred ceEEEcCCC-EEEEECC------ccceEEECCccc
Confidence 888886665 7888766 457999999765
No 208
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=62.10 E-value=15 Score=40.08 Aligned_cols=57 Identities=23% Similarity=0.197 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCC-----hHHHHHHHHHhhhcCCCCEEEEeccccc
Q 002047 708 GQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQH-----SLETITLLLALKVEYPNNVHLIRGNHEA 774 (975)
Q Consensus 708 G~~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~-----s~evl~ll~~lk~~~P~~v~llrGNHE~ 774 (975)
|-+.-|..++++..-... ..-+|..||+++..+. ...++..|-.+. --+...||||.
T Consensus 21 gG~~rl~~~i~~~r~~~~-----~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l~-----~d~~~~GNHef 82 (257)
T cd07406 21 GGAARFATLRKQLRKENP-----NTLVLFSGDVLSPSLLSTATKGKQMVPVLNALG-----VDLACFGNHEF 82 (257)
T ss_pred CCHHHHHHHHHHHHhcCC-----CEEEEECCCccCCccchhhcCCccHHHHHHhcC-----CcEEeeccccc
Confidence 345666777776543211 1246669999987653 245556655553 23557899996
No 209
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=61.35 E-value=12 Score=39.28 Aligned_cols=72 Identities=13% Similarity=0.191 Sum_probs=36.9
Q ss_pred EEEEecCCCC-----HHHHHHHHHHhC-CCCCCCCccceeEEEeccccCCCCChH-------------HHHHHHHHhhhc
Q 002047 700 IKIFGDLHGQ-----FGDLMRLFDEYG-SPSTAGDIAYIDYLFLGDYVDRGQHSL-------------ETITLLLALKVE 760 (975)
Q Consensus 700 i~vvGDiHG~-----~~~L~~ll~~~g-~~~~~~~~~~~~~vfLGDyVDRG~~s~-------------evl~ll~~lk~~ 760 (975)
|+|++|+|=. ++.|.++|..+. ..... .+|++|+++|.-.... +.+..+..+...
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~------~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPD------VLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLES 74 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTEC------EEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCC
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCc------EEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhh
Confidence 5678887765 455666666554 22222 7999999999632221 111122221111
Q ss_pred CC--CCEEEEeccccccch
Q 002047 761 YP--NNVHLIRGNHEAADI 777 (975)
Q Consensus 761 ~P--~~v~llrGNHE~~~~ 777 (975)
.. -+|+++.|+||....
T Consensus 75 i~~~~~vvlvPg~~D~~~~ 93 (209)
T PF04042_consen 75 ILPSTQVVLVPGPNDPTSS 93 (209)
T ss_dssp CHCCSEEEEE--TTCTT-S
T ss_pred cccccEEEEeCCCcccccc
Confidence 11 379999999998655
No 210
>PLN00181 protein SPA1-RELATED; Provisional
Probab=61.14 E-value=4.5e+02 Score=33.59 Aligned_cols=63 Identities=16% Similarity=0.157 Sum_probs=32.5
Q ss_pred CEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEe-CCcEEEEEcCCCCCCCCCcEEEEECCC
Q 002047 185 TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAA 263 (975)
Q Consensus 185 ~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~-~~~~lyV~GG~~g~~~~ndv~~yDl~s 263 (975)
+..++.|+. ...+.+||+.+.. .+.... .....-.++... .++.+++.||.++ .+..||+.+
T Consensus 545 ~~~las~~~------Dg~v~lWd~~~~~----~~~~~~--~H~~~V~~l~~~p~~~~~L~Sgs~Dg-----~v~iWd~~~ 607 (793)
T PLN00181 545 KSQVASSNF------EGVVQVWDVARSQ----LVTEMK--EHEKRVWSIDYSSADPTLLASGSDDG-----SVKLWSINQ 607 (793)
T ss_pred CCEEEEEeC------CCeEEEEECCCCe----EEEEec--CCCCCEEEEEEcCCCCCEEEEEcCCC-----EEEEEECCC
Confidence 345555554 3568889987642 222110 111111222222 2336777787765 577888866
Q ss_pred C
Q 002047 264 K 264 (975)
Q Consensus 264 ~ 264 (975)
.
T Consensus 608 ~ 608 (793)
T PLN00181 608 G 608 (793)
T ss_pred C
Confidence 5
No 211
>PRK04922 tolB translocation protein TolB; Provisional
Probab=60.81 E-value=3.3e+02 Score=31.93 Aligned_cols=184 Identities=14% Similarity=0.175 Sum_probs=87.6
Q ss_pred CcEEEEECCCCcEEEecCCCCCCCCccceEEEEe-CCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCC
Q 002047 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAV-GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPR 228 (975)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~-~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R 228 (975)
..+|++|+.+++...+... +. ........- +++|++..... + ..++|++|+.+.. .+.+... ..
T Consensus 228 ~~l~~~dl~~g~~~~l~~~---~g-~~~~~~~SpDG~~l~~~~s~~--g--~~~Iy~~d~~~g~--~~~lt~~---~~-- 292 (433)
T PRK04922 228 SAIYVQDLATGQRELVASF---RG-INGAPSFSPDGRRLALTLSRD--G--NPEIYVMDLGSRQ--LTRLTNH---FG-- 292 (433)
T ss_pred cEEEEEECCCCCEEEeccC---CC-CccCceECCCCCEEEEEEeCC--C--CceEEEEECCCCC--eEECccC---CC--
Confidence 4699999998887777543 11 111112222 33565443221 1 2589999998763 4444311 11
Q ss_pred cccEEEEe-CCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCC-eEEEecCCCCCCCC
Q 002047 229 YGHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDG-LLLLCGGRDASSVP 306 (975)
Q Consensus 229 ~~h~~~~~-~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g-~lyvfGG~~~~~~~ 306 (975)
........ ++++|++.....+ ..++|.+|+.+. +++.+...+. .........++ .|++..+. +.
T Consensus 293 ~~~~~~~spDG~~l~f~sd~~g---~~~iy~~dl~~g--~~~~lt~~g~-----~~~~~~~SpDG~~Ia~~~~~-~~--- 358 (433)
T PRK04922 293 IDTEPTWAPDGKSIYFTSDRGG---RPQIYRVAASGG--SAERLTFQGN-----YNARASVSPDGKKIAMVHGS-GG--- 358 (433)
T ss_pred CccceEECCCCCEEEEEECCCC---CceEEEEECCCC--CeEEeecCCC-----CccCEEECCCCCEEEEEECC-CC---
Confidence 11122222 3334554433332 247999999888 7777653322 12222333344 44444332 11
Q ss_pred ccceEEeecCCCCeEEEEECCCCCCCCcceeeEEEeCCEEEEEcCcCCCCCccccCCcEEEEECCCCe
Q 002047 307 LASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGV 374 (975)
Q Consensus 307 l~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v~~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~ 374 (975)
...++.++... +.++ ..... .....-...-+++.+++...... ...++.+|+....
T Consensus 359 ~~~I~v~d~~~-g~~~--~Lt~~---~~~~~p~~spdG~~i~~~s~~~g------~~~L~~~~~~g~~ 414 (433)
T PRK04922 359 QYRIAVMDLST-GSVR--TLTPG---SLDESPSFAPNGSMVLYATREGG------RGVLAAVSTDGRV 414 (433)
T ss_pred ceeEEEEECCC-CCeE--ECCCC---CCCCCceECCCCCEEEEEEecCC------ceEEEEEECCCCc
Confidence 12556665433 3333 22211 11111122335555555443221 3458899986654
No 212
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=60.45 E-value=4.6e+02 Score=33.46 Aligned_cols=69 Identities=17% Similarity=0.140 Sum_probs=37.5
Q ss_pred ccEEEEEcCCCCCcEEEE-------E-ecCCCCCCC--cccEEEEeCCcEEEEEcCCCCC-----CCCCcEEEEECCCCC
Q 002047 201 EDLHVLDLTQQRPRWHRV-------V-VQGPGPGPR--YGHVMALVGQRYLMAIGGNDGK-----RPLADVWALDTAAKP 265 (975)
Q Consensus 201 ~dv~~yD~~t~~~~W~~v-------~-~~g~~P~~R--~~h~~~~~~~~~lyV~GG~~g~-----~~~ndv~~yDl~s~~ 265 (975)
..++.+|..+....|..- . ..+..+..- ...+-+++++ .||+ |+.... .....|..||..+..
T Consensus 270 g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIv-G~~v~d~~~~~~~~G~I~A~Da~TGk 347 (764)
T TIGR03074 270 ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVI-GGRVADNYSTDEPSGVIRAFDVNTGA 347 (764)
T ss_pred CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECC-EEEE-EecccccccccCCCcEEEEEECCCCc
Confidence 457788887765566521 1 011222222 2333345565 5555 543211 234679999999998
Q ss_pred cEEEEc
Q 002047 266 YEWRKL 271 (975)
Q Consensus 266 ~~W~~v 271 (975)
..|+.-
T Consensus 348 l~W~~~ 353 (764)
T TIGR03074 348 LVWAWD 353 (764)
T ss_pred EeeEEe
Confidence 777653
No 213
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.83 E-value=37 Score=33.48 Aligned_cols=104 Identities=25% Similarity=0.341 Sum_probs=66.6
Q ss_pred EEEEecCCCC--HHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccccch
Q 002047 700 IKIFGDLHGQ--FGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADI 777 (975)
Q Consensus 700 i~vvGDiHG~--~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~ 777 (975)
+.++||+|=- -.+|-.=|+++=.|..- ..++++|++. +.|++++|..+. ..++++||-.|..
T Consensus 3 vL~lgD~HiP~Ra~~Lp~KFkklLvPgki-----~hilctGNlc-----s~e~~dylk~l~----~dvhiVrGeFD~~-- 66 (183)
T KOG3325|consen 3 VLVLGDLHIPHRANDLPAKFKKLLVPGKI-----QHILCTGNLC-----SKESYDYLKTLS----SDVHIVRGEFDEN-- 66 (183)
T ss_pred EEEeccccCCccccccCHHHHhccCCCce-----eEEEEeCCcc-----hHHHHHHHHhhC----CCcEEEecccCcc--
Confidence 6789999853 34454445554444332 1789999975 568899988763 6899999987762
Q ss_pred hhhcCChHHHHHHhCCcccchhhhhhhccccccceEEEEcceEEEecCCccCcccCHhhhhhccCCccc
Q 002047 778 NALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITM 846 (975)
Q Consensus 778 ~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~ 846 (975)
.+|.+.. ...+-.=||-||||-.--.+.+.+.+.-+.|-+..
T Consensus 67 -----------~~yP~~k----------------vvtvGqfkIG~chGhqViP~gd~~sL~~LaRqldv 108 (183)
T KOG3325|consen 67 -----------LKYPENK----------------VVTVGQFKIGLCHGHQVIPWGDPESLALLARQLDV 108 (183)
T ss_pred -----------ccCCccc----------------eEEeccEEEEeecCcEeecCCCHHHHHHHHHhcCC
Confidence 2222210 01111238999999876555677777777776543
No 214
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=59.80 E-value=2.9e+02 Score=30.85 Aligned_cols=97 Identities=11% Similarity=0.027 Sum_probs=46.6
Q ss_pred cEEEEECC-CCcEEEecCCCCCCCCccceEEEEe-CC-EEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCC
Q 002047 151 DVHCYDVL-TNKWSRITPFGEPPTPRAAHVATAV-GT-MVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 227 (975)
Q Consensus 151 dv~~yD~~-t~~W~~l~~~g~~P~pR~~hsa~~~-~~-~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~ 227 (975)
.+..|++. ++.++.+... +.+-.-+.++.. ++ .+|+.. .. .+.+.+|++.++......+. ..+..
T Consensus 58 ~i~~~~~~~~g~l~~~~~~---~~~~~p~~i~~~~~g~~l~v~~-~~-----~~~v~v~~~~~~g~~~~~~~---~~~~~ 125 (330)
T PRK11028 58 RVLSYRIADDGALTFAAES---PLPGSPTHISTDHQGRFLFSAS-YN-----ANCVSVSPLDKDGIPVAPIQ---IIEGL 125 (330)
T ss_pred cEEEEEECCCCceEEeeee---cCCCCceEEEECCCCCEEEEEE-cC-----CCeEEEEEECCCCCCCCcee---eccCC
Confidence 45566665 4566555432 111111223333 33 566653 21 35788888865321122222 12222
Q ss_pred CcccEEEEe-CCcEEEEEcCCCCCCCCCcEEEEECCCC
Q 002047 228 RYGHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAAK 264 (975)
Q Consensus 228 R~~h~~~~~-~~~~lyV~GG~~g~~~~ndv~~yDl~s~ 264 (975)
..-|.+++. +++++|+..- ..+.+++||+.+.
T Consensus 126 ~~~~~~~~~p~g~~l~v~~~-----~~~~v~v~d~~~~ 158 (330)
T PRK11028 126 EGCHSANIDPDNRTLWVPCL-----KEDRIRLFTLSDD 158 (330)
T ss_pred CcccEeEeCCCCCEEEEeeC-----CCCEEEEEEECCC
Confidence 334555444 3446776542 2357899998763
No 215
>PTZ00421 coronin; Provisional
Probab=59.32 E-value=3.9e+02 Score=32.22 Aligned_cols=62 Identities=11% Similarity=0.067 Sum_probs=34.2
Q ss_pred EEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCC
Q 002047 186 MVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAK 264 (975)
Q Consensus 186 ~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~ 264 (975)
.+++.||. ...+.+||+.+.. ....+. + .. ..-.++....++.+++.|+.++ .+..||+.+.
T Consensus 139 ~iLaSgs~------DgtVrIWDl~tg~-~~~~l~--~-h~--~~V~sla~spdG~lLatgs~Dg-----~IrIwD~rsg 200 (493)
T PTZ00421 139 NVLASAGA------DMVVNVWDVERGK-AVEVIK--C-HS--DQITSLEWNLDGSLLCTTSKDK-----KLNIIDPRDG 200 (493)
T ss_pred CEEEEEeC------CCEEEEEECCCCe-EEEEEc--C-CC--CceEEEEEECCCCEEEEecCCC-----EEEEEECCCC
Confidence 56677764 3568899998753 112221 1 01 1111222222336777777664 5788999876
No 216
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=59.27 E-value=82 Score=37.63 Aligned_cols=101 Identities=11% Similarity=0.060 Sum_probs=55.6
Q ss_pred ccCcEEEEECCCCcEEEecCCCCCCCCccceEEEEeC--CEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecC---
Q 002047 148 ATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVG--TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQG--- 222 (975)
Q Consensus 148 ~~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~--~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g--- 222 (975)
.-.+||+|++..+.|-..-... . ...-++.++ +-++.+||. ...+..||+.+.+ .-..+....
T Consensus 153 sg~evYRlNLEqGrfL~P~~~~---~--~~lN~v~in~~hgLla~Gt~------~g~VEfwDpR~ks-rv~~l~~~~~v~ 220 (703)
T KOG2321|consen 153 SGSEVYRLNLEQGRFLNPFETD---S--GELNVVSINEEHGLLACGTE------DGVVEFWDPRDKS-RVGTLDAASSVN 220 (703)
T ss_pred cCcceEEEEccccccccccccc---c--ccceeeeecCccceEEeccc------CceEEEecchhhh-hheeeecccccC
Confidence 4569999999999986543221 1 122233333 378888885 3568888887653 222222111
Q ss_pred CCCCCCc--ccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCC
Q 002047 223 PGPGPRY--GHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAK 264 (975)
Q Consensus 223 ~~P~~R~--~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~ 264 (975)
..|..-. .-++..+.+.-|-+.=|.. ...++.||+.+.
T Consensus 221 s~pg~~~~~svTal~F~d~gL~~aVGts----~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 221 SHPGGDAAPSVTALKFRDDGLHVAVGTS----TGSVLIYDLRAS 260 (703)
T ss_pred CCccccccCcceEEEecCCceeEEeecc----CCcEEEEEcccC
Confidence 2232211 2344455553344433332 246899999887
No 217
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=58.82 E-value=14 Score=41.02 Aligned_cols=70 Identities=23% Similarity=0.164 Sum_probs=36.0
Q ss_pred CEEEEecCCCCHHH----------HHHHHHHhCCCCCCCCccceeEEEeccccCCCCC-----hHHHHHHHHHhhhcCCC
Q 002047 699 PIKIFGDLHGQFGD----------LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQH-----SLETITLLLALKVEYPN 763 (975)
Q Consensus 699 ~i~vvGDiHG~~~~----------L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~-----s~evl~ll~~lk~~~P~ 763 (975)
.|+.+.|+||++.. +..+++........ +....-+|-.||++..-+. ..-++.+|-++..
T Consensus 2 tIl~tnD~Hg~l~~~~~~~gG~ar~a~~i~~~r~~~~~-~~~~~l~ld~GD~~~Gs~~~~~~~g~~~~~~~n~~g~---- 76 (285)
T cd07405 2 TILHTNDHHGHFWPNGTGEYGLAAQKTLVDGVRREVAA-QGGYVLLLSGGDINTGVPESDLQDAEPDFRGMNLVGY---- 76 (285)
T ss_pred EEEEEcccccccccCCCCCccHHHHHHHHHHHHHHhhc-cCCCEEEEeCCCcCCCchhHHhcCcchHHHHHHhhCC----
Confidence 36788999998643 44455544211000 0011134559999843222 2333455555432
Q ss_pred CEEEEeccccc
Q 002047 764 NVHLIRGNHEA 774 (975)
Q Consensus 764 ~v~llrGNHE~ 774 (975)
.+. ..||||.
T Consensus 77 Da~-~~GNHEf 86 (285)
T cd07405 77 DAM-AVGNHEF 86 (285)
T ss_pred cEE-eeccccc
Confidence 333 4499996
No 218
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=57.94 E-value=3.1e+02 Score=30.60 Aligned_cols=138 Identities=17% Similarity=0.209 Sum_probs=66.6
Q ss_pred CCcEEEEECCCCC--cEEEEccCCCCCCCCcceeEEEEE---eCCeEEEecCCCCCCCCccceEEeecCCCCeEEEEECC
Q 002047 253 LADVWALDTAAKP--YEWRKLEPEGEGPPPCMYATASAR---SDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAP 327 (975)
Q Consensus 253 ~ndv~~yDl~s~~--~~W~~v~~~~~~P~~r~~~~a~~~---~~g~lyvfGG~~~~~~~l~d~~~~~~~~~~~W~w~~~~ 327 (975)
.+.|+.||.+.+. +-|..--.-... -..-.+-.+ .+++||+.=+ ++..---+|.++..+. .-++....
T Consensus 77 YSHVH~yd~e~~~VrLLWkesih~~~~---WaGEVSdIlYdP~~D~LLlAR~---DGh~nLGvy~ldr~~g-~~~~L~~~ 149 (339)
T PF09910_consen 77 YSHVHEYDTENDSVRLLWKESIHDKTK---WAGEVSDILYDPYEDRLLLARA---DGHANLGVYSLDRRTG-KAEKLSSN 149 (339)
T ss_pred cceEEEEEcCCCeEEEEEecccCCccc---cccchhheeeCCCcCEEEEEec---CCcceeeeEEEcccCC-ceeeccCC
Confidence 6789999998873 345432211110 000011111 2466666522 2223345677755433 33333322
Q ss_pred CCCCCCcceeeEEEeCCEEEEEcCcCCCCCccccCCcEEEEECCCCeE--EEcccCcCCCCCCCCccccCCCCCccCCCc
Q 002047 328 GVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVW--CDTKSVVTSPRTGRYSADAAGGDAAVELTR 405 (975)
Q Consensus 328 g~~P~~R~~hs~v~~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~W--~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~ 405 (975)
|.. -.+.+++..+|-+ .. .......+.+||+.+++| ..+.... ++ .+.....
T Consensus 150 ---ps~---KG~~~~D~a~F~i----~~--~~~g~~~i~~~Dli~~~~~~e~f~~~~-s~-------------Dg~~~~~ 203 (339)
T PF09910_consen 150 ---PSL---KGTLVHDYACFGI----NN--FHKGVSGIHCLDLISGKWVIESFDVSL-SV-------------DGGPVIR 203 (339)
T ss_pred ---CCc---CceEeeeeEEEec----cc--cccCCceEEEEEccCCeEEEEeccccc-CC-------------CCCceEe
Confidence 222 2344444444422 11 123477899999999999 3332211 11 1122335
Q ss_pred cceeEEEEECCEEEEE--cC
Q 002047 406 RCRHAAAAVGDLIFIY--GG 423 (975)
Q Consensus 406 R~~hsa~~~~~~LyV~--GG 423 (975)
|..-.++..-+++|.| ||
T Consensus 204 ~~~G~~~s~ynR~faF~rGG 223 (339)
T PF09910_consen 204 PELGAMASAYNRLFAFVRGG 223 (339)
T ss_pred eccccEEEEeeeEEEEEecc
Confidence 5555666677777765 55
No 219
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.52 E-value=26 Score=40.67 Aligned_cols=71 Identities=18% Similarity=0.352 Sum_probs=51.9
Q ss_pred cCCEEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccc
Q 002047 697 KAPIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNH 772 (975)
Q Consensus 697 ~~~i~vvGDiHG~~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNH 772 (975)
+.+|.||||.-|.+..|.+-++.+.-.. | ++--++++|++.+--..+-|++.+...- ...|--++++-+|-
T Consensus 5 ~~kILv~Gd~~Gr~~eli~rI~~v~Kk~--G--pFd~liCvGnfF~~~~~~~e~~~ykng~-~~vPiptY~~g~~~ 75 (528)
T KOG2476|consen 5 DAKILVCGDVEGRFDELIKRIQKVNKKS--G--PFDLLICVGNFFGHDTQNAEVEKYKNGT-KKVPIPTYFLGDNA 75 (528)
T ss_pred CceEEEEcCccccHHHHHHHHHHHhhcC--C--CceEEEEecccCCCccchhHHHHHhcCC-ccCceeEEEecCCC
Confidence 4789999999999999987776653322 1 1225788999999877888888777654 45666677776665
No 220
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=55.86 E-value=87 Score=36.62 Aligned_cols=119 Identities=17% Similarity=0.090 Sum_probs=62.5
Q ss_pred ccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCccc
Q 002047 230 GHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLAS 309 (975)
Q Consensus 230 ~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~d 309 (975)
-+++++-.+++|..+|+..| -|-+||.++. .--..-..... +....-....++.++++|+-+..
T Consensus 71 v~s~~fR~DG~LlaaGD~sG-----~V~vfD~k~r--~iLR~~~ah~a---pv~~~~f~~~d~t~l~s~sDd~v------ 134 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAAGDESG-----HVKVFDMKSR--VILRQLYAHQA---PVHVTKFSPQDNTMLVSGSDDKV------ 134 (487)
T ss_pred eeEEEeecCCeEEEccCCcC-----cEEEeccccH--HHHHHHhhccC---ceeEEEecccCCeEEEecCCCce------
Confidence 34555555668999998766 5788996552 00000000111 12222234468888888874432
Q ss_pred eEEeecCCCCeEEEEECCCCCCCCcceeeEEEeCCEEEEEcCcCCCCCccccCCcEEEEECCCC-eEE
Q 002047 310 AYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAG-VWC 376 (975)
Q Consensus 310 ~~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v~~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~-~W~ 376 (975)
..|.+..+.. ...+..+.. ..-...++.-.+++|++.|||++. |-.||+.+. .|.
T Consensus 135 -~k~~d~s~a~-v~~~l~~ht-DYVR~g~~~~~~~hivvtGsYDg~---------vrl~DtR~~~~~v 190 (487)
T KOG0310|consen 135 -VKYWDLSTAY-VQAELSGHT-DYVRCGDISPANDHIVVTGSYDGK---------VRLWDTRSLTSRV 190 (487)
T ss_pred -EEEEEcCCcE-EEEEecCCc-ceeEeeccccCCCeEEEecCCCce---------EEEEEeccCCcee
Confidence 1222222211 222333321 111222344457899999999764 667888887 443
No 221
>PRK04043 tolB translocation protein TolB; Provisional
Probab=55.39 E-value=4.1e+02 Score=31.25 Aligned_cols=153 Identities=10% Similarity=0.053 Sum_probs=76.7
Q ss_pred ccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCC
Q 002047 201 EDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPP 280 (975)
Q Consensus 201 ~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~ 280 (975)
.++|++|+.+.. =+.+. ..+ .........-++++|++.-..++ ..++|.+|+.+. .++++.....
T Consensus 213 ~~Iyv~dl~tg~--~~~lt---~~~-g~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g--~~~~LT~~~~---- 277 (419)
T PRK04043 213 PTLYKYNLYTGK--KEKIA---SSQ-GMLVVSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTK--TLTQITNYPG---- 277 (419)
T ss_pred CEEEEEECCCCc--EEEEe---cCC-CcEEeeEECCCCCEEEEEEccCC---CcEEEEEECCCC--cEEEcccCCC----
Confidence 489999998763 34443 111 11111222224445655443333 368999999988 8888865432
Q ss_pred cceeEEEEEeCC-eEEEecCCCCCCCCccceEEeecCCCCeEEEEECCCCCCCCcceeeEEEeCC-EEEEEcCcCCCCCc
Q 002047 281 CMYATASARSDG-LLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNA-RLHVSGGALGGGRM 358 (975)
Q Consensus 281 r~~~~a~~~~~g-~lyvfGG~~~~~~~l~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v~~~~-~L~V~GG~~~~~~~ 358 (975)
.........+| +||+.-.+.+ ..++|.++.... ..+.....+ .+.. ...-++ .|...........
T Consensus 278 -~d~~p~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g-~~~rlt~~g-----~~~~-~~SPDG~~Ia~~~~~~~~~~- 344 (419)
T PRK04043 278 -IDVNGNFVEDDKRIVFVSDRLG----YPNIFMKKLNSG-SVEQVVFHG-----KNNS-SVSTYKNYIVYSSRETNNEF- 344 (419)
T ss_pred -ccCccEECCCCCEEEEEECCCC----CceEEEEECCCC-CeEeCccCC-----CcCc-eECCCCCEEEEEEcCCCccc-
Confidence 11222233344 5666544322 246777765533 332111111 1112 222244 4443332221110
Q ss_pred cccCCcEEEEECCCCeEEEcccC
Q 002047 359 VEDSSSVAVLDTAAGVWCDTKSV 381 (975)
Q Consensus 359 ~~~~~dv~~yD~~t~~W~~v~~~ 381 (975)
.....+++++|+++..++.+...
T Consensus 345 ~~~~~~I~v~d~~~g~~~~LT~~ 367 (419)
T PRK04043 345 GKNTFNLYLISTNSDYIRRLTAN 367 (419)
T ss_pred CCCCcEEEEEECCCCCeEECCCC
Confidence 01135799999999999887653
No 222
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=55.28 E-value=2.5e+02 Score=28.86 Aligned_cols=63 Identities=11% Similarity=0.159 Sum_probs=33.2
Q ss_pred CEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCC
Q 002047 185 TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAK 264 (975)
Q Consensus 185 ~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~ 264 (975)
+..++.|+. ...+.+||+.+.. .-..+. .....-.++....++.+++.|+.+ ..+..||+.+.
T Consensus 63 ~~~l~~~~~------~~~i~i~~~~~~~-~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~ 125 (289)
T cd00200 63 GTYLASGSS------DKTIRLWDLETGE-CVRTLT-----GHTSYVSSVAFSPDGRILSSSSRD-----KTIKVWDVETG 125 (289)
T ss_pred CCEEEEEcC------CCeEEEEEcCccc-ceEEEe-----ccCCcEEEEEEcCCCCEEEEecCC-----CeEEEEECCCc
Confidence 346666664 3578999988742 111121 111122233333433566666534 36888998755
No 223
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=54.75 E-value=3.6e+02 Score=30.51 Aligned_cols=175 Identities=17% Similarity=0.127 Sum_probs=83.3
Q ss_pred ccceEEEEeC--CEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCC-cccEEEEeCCcEEEEEcCCCCCC
Q 002047 175 RAAHVATAVG--TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPR-YGHVMALVGQRYLMAIGGNDGKR 251 (975)
Q Consensus 175 R~~hsa~~~~--~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R-~~h~~~~~~~~~lyV~GG~~g~~ 251 (975)
-..|.+.... +.+|+.- . -.+.+++|++.....+....... ..|..- -.|.+..-+++++||..-.
T Consensus 144 ~h~H~v~~~pdg~~v~v~d-l-----G~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~---- 212 (345)
T PF10282_consen 144 PHPHQVVFSPDGRFVYVPD-L-----GADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNEL---- 212 (345)
T ss_dssp TCEEEEEE-TTSSEEEEEE-T-----TTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETT----
T ss_pred ccceeEEECCCCCEEEEEe-c-----CCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCC----
Confidence 3456666553 3676653 1 24689999998764345443322 222221 2344444455689998643
Q ss_pred CCCcEEEEECC--CCCcEEEEccCCC---CCCCCcceeEEEEEe-C-CeEEEecCCCCCCCCccceEEeec-CCCCeEEE
Q 002047 252 PLADVWALDTA--AKPYEWRKLEPEG---EGPPPCMYATASARS-D-GLLLLCGGRDASSVPLASAYGLAK-HRDGRWEW 323 (975)
Q Consensus 252 ~~ndv~~yDl~--s~~~~W~~v~~~~---~~P~~r~~~~a~~~~-~-g~lyvfGG~~~~~~~l~d~~~~~~-~~~~~W~w 323 (975)
.+.|.+|+.. +. +|+.+.... .........+...+. + ..||+.-. . .+.+..|+. ..++..++
T Consensus 213 -s~~v~v~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr-~-----~~sI~vf~~d~~~g~l~~ 283 (345)
T PF10282_consen 213 -SNTVSVFDYDPSDG--SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR-G-----SNSISVFDLDPATGTLTL 283 (345)
T ss_dssp -TTEEEEEEEETTTT--EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC-T-----TTEEEEEEECTTTTTEEE
T ss_pred -CCcEEEEeecccCC--ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec-c-----CCEEEEEEEecCCCceEE
Confidence 3567777666 44 565543222 211112123333333 3 45666432 2 234444544 33445544
Q ss_pred EECC---CCCCCCcceeeEEE--eCCEEEEEcCcCCCCCccccCCcEEEEECCCCeEEEcccC
Q 002047 324 AIAP---GVSPSPRYQHAAVF--VNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSV 381 (975)
Q Consensus 324 ~~~~---g~~P~~R~~hs~v~--~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 381 (975)
.... +. .|| .+++ -+..|||.+.. .+ .-.++..|.+++.+..+...
T Consensus 284 ~~~~~~~G~--~Pr---~~~~s~~g~~l~Va~~~-s~------~v~vf~~d~~tG~l~~~~~~ 334 (345)
T PF10282_consen 284 VQTVPTGGK--FPR---HFAFSPDGRYLYVANQD-SN------TVSVFDIDPDTGKLTPVGSS 334 (345)
T ss_dssp EEEEEESSS--SEE---EEEE-TTSSEEEEEETT-TT------EEEEEEEETTTTEEEEEEEE
T ss_pred EEEEeCCCC--Ccc---EEEEeCCCCEEEEEecC-CC------eEEEEEEeCCCCcEEEeccc
Confidence 4332 22 233 2223 34566664432 11 12345557789999888753
No 224
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=54.50 E-value=3.5e+02 Score=34.50 Aligned_cols=36 Identities=25% Similarity=0.198 Sum_probs=25.7
Q ss_pred cEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccC
Q 002047 231 HVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEP 273 (975)
Q Consensus 231 h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~ 273 (975)
.+-+++++ .||+... .+.++.+|..+....|+.-..
T Consensus 188 ~TPlvvgg-~lYv~t~------~~~V~ALDa~TGk~lW~~d~~ 223 (764)
T TIGR03074 188 ATPLKVGD-TLYLCTP------HNKVIALDAATGKEKWKFDPK 223 (764)
T ss_pred cCCEEECC-EEEEECC------CCeEEEEECCCCcEEEEEcCC
Confidence 34455666 8999754 357999999988888986543
No 225
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=53.96 E-value=18 Score=43.79 Aligned_cols=72 Identities=28% Similarity=0.294 Sum_probs=42.5
Q ss_pred cCCEEEEecCCCCHH------------HHHHHHHHhCCCCCCCCccceeEEEeccccCCCC------ChHHHHHHHHHhh
Q 002047 697 KAPIKIFGDLHGQFG------------DLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQ------HSLETITLLLALK 758 (975)
Q Consensus 697 ~~~i~vvGDiHG~~~------------~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~------~s~evl~ll~~lk 758 (975)
+-.|+-+.|+||.+. -+.++.........+.. ..-+|=.||+++..+ .....+.+|-.|+
T Consensus 26 ~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~--~~llld~GD~~~G~~l~~~~~~g~~~~~~mN~m~ 103 (517)
T COG0737 26 KLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENK--NVLLLDAGDLIQGSPLSDYLTKGEPTVDLLNALG 103 (517)
T ss_pred eEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcC--CeEEEeCCcccCCccccccccCCChHHHHHhhcC
Confidence 346788999999999 34343332221111111 112333999999843 3345667777764
Q ss_pred hcCCCCEEEEecccccc
Q 002047 759 VEYPNNVHLIRGNHEAA 775 (975)
Q Consensus 759 ~~~P~~v~llrGNHE~~ 775 (975)
. =.+..||||.-
T Consensus 104 y-----Da~tiGNHEFd 115 (517)
T COG0737 104 Y-----DAMTLGNHEFD 115 (517)
T ss_pred C-----cEEeecccccc
Confidence 3 34667999983
No 226
>PRK00178 tolB translocation protein TolB; Provisional
Probab=53.42 E-value=4.2e+02 Score=30.85 Aligned_cols=185 Identities=14% Similarity=0.133 Sum_probs=87.8
Q ss_pred CcEEEEECCCCcEEEecCCCCCCCCccceEEEEe-CCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCC
Q 002047 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAV-GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPR 228 (975)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~-~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R 228 (975)
..+|++|+.+++-+.+.... . ........- +++|++..-. .+ ..++|++|+.+.. ++.+.. .+. .
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~---g-~~~~~~~SpDG~~la~~~~~--~g--~~~Iy~~d~~~~~--~~~lt~---~~~-~ 288 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFE---G-LNGAPAWSPDGSKLAFVLSK--DG--NPEIYVMDLASRQ--LSRVTN---HPA-I 288 (430)
T ss_pred CEEEEEECCCCCEEEccCCC---C-CcCCeEECCCCCEEEEEEcc--CC--CceEEEEECCCCC--eEEccc---CCC-C
Confidence 47999999998887775431 1 111111122 3355543221 11 2589999998864 665541 111 1
Q ss_pred cccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCcc
Q 002047 229 YGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLA 308 (975)
Q Consensus 229 ~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~ 308 (975)
.......-++++||+....++ ...+|.+|+.+. +++++...+. .........+++.+++...... ..
T Consensus 289 ~~~~~~spDg~~i~f~s~~~g---~~~iy~~d~~~g--~~~~lt~~~~-----~~~~~~~Spdg~~i~~~~~~~~---~~ 355 (430)
T PRK00178 289 DTEPFWGKDGRTLYFTSDRGG---KPQIYKVNVNGG--RAERVTFVGN-----YNARPRLSADGKTLVMVHRQDG---NF 355 (430)
T ss_pred cCCeEECCCCCEEEEEECCCC---CceEEEEECCCC--CEEEeecCCC-----CccceEECCCCCEEEEEEccCC---ce
Confidence 111111223445655543222 257999999888 7777753221 1222233334444444332221 23
Q ss_pred ceEEeecCCCCeEEEEECCCCCCCCcceeeEEEeCCEEEEEcCcCCCCCccccCCcEEEEECCCC
Q 002047 309 SAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAG 373 (975)
Q Consensus 309 d~~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v~~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~ 373 (975)
+++.++.... .++....... . ... ...-+++++++....++ ...++..++...
T Consensus 356 ~l~~~dl~tg-~~~~lt~~~~---~-~~p-~~spdg~~i~~~~~~~g------~~~l~~~~~~g~ 408 (430)
T PRK00178 356 HVAAQDLQRG-SVRILTDTSL---D-ESP-SVAPNGTMLIYATRQQG------RGVLMLVSINGR 408 (430)
T ss_pred EEEEEECCCC-CEEEccCCCC---C-CCc-eECCCCCEEEEEEecCC------ceEEEEEECCCC
Confidence 4666655433 3332221111 0 111 22235666666443222 234788887654
No 227
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=52.95 E-value=2.8e+02 Score=28.58 Aligned_cols=94 Identities=10% Similarity=0.080 Sum_probs=43.6
Q ss_pred CcEEEEECCCCcEEEecCCCCCCCCccceEEEEeC-CEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCC
Q 002047 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVG-TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPR 228 (975)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~-~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R 228 (975)
..++.||..+......-.. ....-.++.... +.+++.|+. ...+.+||+.+.. ....+. ....
T Consensus 73 ~~i~i~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~-~~~~~~-----~~~~ 136 (289)
T cd00200 73 KTIRLWDLETGECVRTLTG----HTSYVSSVAFSPDGRILSSSSR------DKTIKVWDVETGK-CLTTLR-----GHTD 136 (289)
T ss_pred CeEEEEEcCcccceEEEec----cCCcEEEEEEcCCCCEEEEecC------CCeEEEEECCCcE-EEEEec-----cCCC
Confidence 3678888876432221111 111122233333 366666652 3568899988542 112221 1111
Q ss_pred cccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCC
Q 002047 229 YGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAK 264 (975)
Q Consensus 229 ~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~ 264 (975)
.-.++....++.+++.|..+ ..+..||+.+.
T Consensus 137 ~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~ 167 (289)
T cd00200 137 WVNSVAFSPDGTFVASSSQD-----GTIKLWDLRTG 167 (289)
T ss_pred cEEEEEEcCcCCEEEEEcCC-----CcEEEEEcccc
Confidence 12233333333455544423 36888998654
No 228
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=52.30 E-value=4e+02 Score=30.21 Aligned_cols=202 Identities=13% Similarity=0.085 Sum_probs=91.9
Q ss_pred cEEEEECCCCcEEEecCCCCCCCCccceEEEE--eCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCC-C
Q 002047 151 DVHCYDVLTNKWSRITPFGEPPTPRAAHVATA--VGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPG-P 227 (975)
Q Consensus 151 dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~--~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~-~ 227 (975)
.++.||..+.+++.+........|.+ ++. -++.||+..... .....+..|++..++.+.+.+.. .+. +
T Consensus 16 ~~~~~d~~~g~l~~~~~~~~~~~Ps~---l~~~~~~~~LY~~~e~~---~~~g~v~~~~i~~~~g~L~~~~~---~~~~g 86 (345)
T PF10282_consen 16 YVFRFDEETGTLTLVQTVAEGENPSW---LAVSPDGRRLYVVNEGS---GDSGGVSSYRIDPDTGTLTLLNS---VPSGG 86 (345)
T ss_dssp EEEEEETTTTEEEEEEEEEESSSECC---EEE-TTSSEEEEEETTS---STTTEEEEEEEETTTTEEEEEEE---EEESS
T ss_pred EEEEEcCCCCCceEeeeecCCCCCce---EEEEeCCCEEEEEEccc---cCCCCEEEEEECCCcceeEEeee---eccCC
Confidence 34556779999988764311112211 222 245888886543 12346777777665334666652 221 1
Q ss_pred Cc-ccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEc---------cCCCCCCCCcceeEEEEEeCC-eEEE
Q 002047 228 RY-GHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKL---------EPEGEGPPPCMYATASARSDG-LLLL 296 (975)
Q Consensus 228 R~-~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v---------~~~~~~P~~r~~~~a~~~~~g-~lyv 296 (975)
.. .|.++.-+++.||+.--. ...+.+|++..+- +=... .+..........|.+....++ .+|+
T Consensus 87 ~~p~~i~~~~~g~~l~vany~-----~g~v~v~~l~~~g-~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYG-----GGSVSVFPLDDDG-SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETT-----TTEEEEEEECTTS-EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred CCcEEEEEecCCCEEEEEEcc-----CCeEEEEEccCCc-ccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 21 232222245567775321 2467778776631 11111 011111111234555555554 4565
Q ss_pred ecCCCCCCCCccceEEeecCCCC-eEEEEECCCCCCCCcceeeEEEe--CCEEEEEcCcCCCCCccccCCcEEEEECC--
Q 002047 297 CGGRDASSVPLASAYGLAKHRDG-RWEWAIAPGVSPSPRYQHAAVFV--NARLHVSGGALGGGRMVEDSSSVAVLDTA-- 371 (975)
Q Consensus 297 fGG~~~~~~~l~d~~~~~~~~~~-~W~w~~~~g~~P~~R~~hs~v~~--~~~L~V~GG~~~~~~~~~~~~dv~~yD~~-- 371 (975)
. .. -.+.++.|+..... .+........ |..-.-..+++. +..+||..-. .+.|.+|+..
T Consensus 161 ~-dl-----G~D~v~~~~~~~~~~~l~~~~~~~~-~~G~GPRh~~f~pdg~~~Yv~~e~---------s~~v~v~~~~~~ 224 (345)
T PF10282_consen 161 P-DL-----GADRVYVYDIDDDTGKLTPVDSIKV-PPGSGPRHLAFSPDGKYAYVVNEL---------SNTVSVFDYDPS 224 (345)
T ss_dssp E-ET-----TTTEEEEEEE-TTS-TEEEEEEEEC-STTSSEEEEEE-TTSSEEEEEETT---------TTEEEEEEEETT
T ss_pred E-ec-----CCCEEEEEEEeCCCceEEEeecccc-ccCCCCcEEEEcCCcCEEEEecCC---------CCcEEEEeeccc
Confidence 4 21 13445555543332 2322111111 121111123343 3479998653 3345555444
Q ss_pred CCeEEEcccCcC
Q 002047 372 AGVWCDTKSVVT 383 (975)
Q Consensus 372 t~~W~~v~~~~~ 383 (975)
+..|+.+.....
T Consensus 225 ~g~~~~~~~~~~ 236 (345)
T PF10282_consen 225 DGSLTEIQTIST 236 (345)
T ss_dssp TTEEEEEEEEES
T ss_pred CCceeEEEEeee
Confidence 778887766543
No 229
>smart00284 OLF Olfactomedin-like domains.
Probab=52.20 E-value=3.5e+02 Score=29.55 Aligned_cols=159 Identities=13% Similarity=0.016 Sum_probs=77.9
Q ss_pred CCCccceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCc-EEEEEecC---CCCCCCcccE---EEEeCCcEEEEE
Q 002047 172 PTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPR-WHRVVVQG---PGPGPRYGHV---MALVGQRYLMAI 244 (975)
Q Consensus 172 P~pR~~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~-W~~v~~~g---~~P~~R~~h~---~~~~~~~~lyV~ 244 (975)
|.+-.+-+.++.++.+|.--.. ..++.+||+.+.+.. +..++..+ ..|-...+++ .++-++ -|+|+
T Consensus 71 p~~~~GtG~VVYngslYY~~~~------s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~-GLWvI 143 (255)
T smart00284 71 PHAGQGTGVVVYNGSLYFNKFN------SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDEN-GLWVI 143 (255)
T ss_pred CCccccccEEEECceEEEEecC------CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCC-ceEEE
Confidence 5666777888889988876432 467999999997521 33332111 1121111222 222233 47777
Q ss_pred cCCCCCCCCCcEEEEECCCCC--cEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCccceEEeecCCCCeEE
Q 002047 245 GGNDGKRPLADVWALDTAAKP--YEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWE 322 (975)
Q Consensus 245 GG~~g~~~~ndv~~yDl~s~~--~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~d~~~~~~~~~~~W~ 322 (975)
=....+.-.--|-++|+.+.. -+|..--+ +.....+.+.-|.||+.-...... ..-.+.|+..+. +-.
T Consensus 144 Yat~~~~g~ivvSkLnp~tL~ve~tW~T~~~-------k~sa~naFmvCGvLY~~~s~~~~~--~~I~yayDt~t~-~~~ 213 (255)
T smart00284 144 YATEQNAGKIVISKLNPATLTIENTWITTYN-------KRSASNAFMICGILYVTRSLGSKG--EKVFYAYDTNTG-KEG 213 (255)
T ss_pred EeccCCCCCEEEEeeCcccceEEEEEEcCCC-------cccccccEEEeeEEEEEccCCCCC--cEEEEEEECCCC-ccc
Confidence 443332222234567776552 15544211 233344555678899985322111 223455655543 212
Q ss_pred EEECCCCCCCCcceeeEEEe---CCEEEEE
Q 002047 323 WAIAPGVSPSPRYQHAAVFV---NARLHVS 349 (975)
Q Consensus 323 w~~~~g~~P~~R~~hs~v~~---~~~L~V~ 349 (975)
...++ .+.....+++.-+ +.+||+.
T Consensus 214 ~~~i~--f~n~y~~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 214 HLDIP--FENMYEYISMLDYNPNDRKLYAW 241 (255)
T ss_pred eeeee--eccccccceeceeCCCCCeEEEE
Confidence 22221 1222334444444 3578876
No 230
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=51.58 E-value=3.2e+02 Score=28.97 Aligned_cols=191 Identities=13% Similarity=0.059 Sum_probs=99.4
Q ss_pred ccCcEEEEECCCCcEEEecCCCCCCCCccceEEEEe--CCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEec--CC
Q 002047 148 ATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAV--GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQ--GP 223 (975)
Q Consensus 148 ~~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~--~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~--g~ 223 (975)
....++++|+.+..-..+... . ..+++.. ++.+|+.... .+.++|+.+. +++.+... +.
T Consensus 20 ~~~~i~~~~~~~~~~~~~~~~----~---~~G~~~~~~~g~l~v~~~~--------~~~~~d~~~g--~~~~~~~~~~~~ 82 (246)
T PF08450_consen 20 PGGRIYRVDPDTGEVEVIDLP----G---PNGMAFDRPDGRLYVADSG--------GIAVVDPDTG--KVTVLADLPDGG 82 (246)
T ss_dssp TTTEEEEEETTTTEEEEEESS----S---EEEEEEECTTSEEEEEETT--------CEEEEETTTT--EEEEEEEEETTC
T ss_pred CCCEEEEEECCCCeEEEEecC----C---CceEEEEccCCEEEEEEcC--------ceEEEecCCC--cEEEEeeccCCC
Confidence 345899999999877665543 2 4445554 5688887643 3567788876 47776633 22
Q ss_pred CCCCCcccEEEEeCCcEEEEEcCCCC-CCCC--CcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCC-eEEEecC
Q 002047 224 GPGPRYGHVMALVGQRYLMAIGGNDG-KRPL--ADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDG-LLLLCGG 299 (975)
Q Consensus 224 ~P~~R~~h~~~~~~~~~lyV~GG~~g-~~~~--ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g-~lyvfGG 299 (975)
.+..|.+-.++.-++ .||+---... .... ..+|++++. . +...+..... .-...+...++ .||+.--
T Consensus 83 ~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~--~~~~~~~~~~-----~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 83 VPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-G--KVTVVADGLG-----FPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp SCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-S--EEEEEEEEES-----SEEEEEEETTSSEEEEEET
T ss_pred cccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-C--eEEEEecCcc-----cccceEECCcchheeeccc
Confidence 244444444443344 6777532211 1112 679999998 5 5555533211 12223333344 5777421
Q ss_pred CCCCCCCccceEEeecCCCCe-EEEEECCCCCCCC-cceeeEEEe-CCEEEEEcCcCCCCCccccCCcEEEEECCCCeEE
Q 002047 300 RDASSVPLASAYGLAKHRDGR-WEWAIAPGVSPSP-RYQHAAVFV-NARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWC 376 (975)
Q Consensus 300 ~~~~~~~l~d~~~~~~~~~~~-W~w~~~~g~~P~~-R~~hs~v~~-~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~W~ 376 (975)
....+|.|+....+. +.-...-...+.. ..--++++- +++|||..- ....|++||++-..-.
T Consensus 154 ------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~---------~~~~I~~~~p~G~~~~ 218 (246)
T PF08450_consen 154 ------FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW---------GGGRIVVFDPDGKLLR 218 (246)
T ss_dssp ------TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE---------TTTEEEEEETTSCEEE
T ss_pred ------ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc---------CCCEEEEECCCccEEE
Confidence 234578887654322 3322211111111 122334443 578998622 1345999999955554
Q ss_pred Ecc
Q 002047 377 DTK 379 (975)
Q Consensus 377 ~v~ 379 (975)
.+.
T Consensus 219 ~i~ 221 (246)
T PF08450_consen 219 EIE 221 (246)
T ss_dssp EEE
T ss_pred EEc
Confidence 443
No 231
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=51.34 E-value=22 Score=39.37 Aligned_cols=70 Identities=20% Similarity=0.192 Sum_probs=37.7
Q ss_pred CEEEEecCCCCHHH-------------HHHHHHHhCCC-CCCCCccceeEEEeccccCCCCCh-------HHHHHHHHHh
Q 002047 699 PIKIFGDLHGQFGD-------------LMRLFDEYGSP-STAGDIAYIDYLFLGDYVDRGQHS-------LETITLLLAL 757 (975)
Q Consensus 699 ~i~vvGDiHG~~~~-------------L~~ll~~~g~~-~~~~~~~~~~~vfLGDyVDRG~~s-------~evl~ll~~l 757 (975)
.|+-+.|+||++.. +.++++...-. ...+ ...-+|..||+++.-+.+ .-++.+|-+|
T Consensus 7 tILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~--~~~Llld~GD~~qGs~~~~~~~~~g~~~~~~mN~m 84 (282)
T cd07407 7 NFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKG--VDLLLVDTGDLHDGNGLSDASPPPGSYSNPIFRMM 84 (282)
T ss_pred EEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcC--CCEEEEeCCCccCCeeceeeecCCChHHHHHHHhc
Confidence 47889999998641 23333322100 0000 011355599999754322 2234555554
Q ss_pred hhcCCCCEEEEecccccc
Q 002047 758 KVEYPNNVHLIRGNHEAA 775 (975)
Q Consensus 758 k~~~P~~v~llrGNHE~~ 775 (975)
.-=.+..||||.-
T Consensus 85 -----gyDa~tlGNHEFd 97 (282)
T cd07407 85 -----PYDLLTIGNHELY 97 (282)
T ss_pred -----CCcEEeecccccC
Confidence 3446778999994
No 232
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=51.29 E-value=29 Score=38.89 Aligned_cols=43 Identities=16% Similarity=0.218 Sum_probs=27.0
Q ss_pred eEEEeccccCCCCC---hHHHHHHHHHhhhcCCCCEEEEeccccccc
Q 002047 733 DYLFLGDYVDRGQH---SLETITLLLALKVEYPNNVHLIRGNHEAAD 776 (975)
Q Consensus 733 ~~vfLGDyVDRG~~---s~evl~ll~~lk~~~P~~v~llrGNHE~~~ 776 (975)
-+||+||.|+. .. ...+|...++=.+.+.=-...+.||||...
T Consensus 103 lVVfTGD~i~g-~~t~Da~~sl~kAvaP~I~~~IPwA~~lGNHDdes 148 (379)
T KOG1432|consen 103 LVVFTGDNIFG-HSTQDAATSLMKAVAPAIDRKIPWAAVLGNHDDES 148 (379)
T ss_pred EEEEeCCcccc-cccHhHHHHHHHHhhhHhhcCCCeEEEeccccccc
Confidence 58999999996 32 233343333333443334577899999853
No 233
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=50.44 E-value=42 Score=37.12 Aligned_cols=76 Identities=14% Similarity=0.294 Sum_probs=48.8
Q ss_pred CCEEEEecCCC----CHHHHHHHHHHhC-CCCCCCCccceeEEEeccccCCC----CCh----HHHHHHHHHh-hhcCC-
Q 002047 698 APIKIFGDLHG----QFGDLMRLFDEYG-SPSTAGDIAYIDYLFLGDYVDRG----QHS----LETITLLLAL-KVEYP- 762 (975)
Q Consensus 698 ~~i~vvGDiHG----~~~~L~~ll~~~g-~~~~~~~~~~~~~vfLGDyVDRG----~~s----~evl~ll~~l-k~~~P- 762 (975)
..++|+||+|= .++.|.++|+.+. ..+. ++ ...-+||+|+++-+. ..+ .|-..-|..| ..+||
T Consensus 28 ~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~-~~-~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls~fp~ 105 (291)
T PTZ00235 28 HNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPE-NE-LPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLISKFKL 105 (291)
T ss_pred eEEEEEEeeccCCHHHHHHHHHHHHHhhccCcc-cC-CCeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHHhChH
Confidence 56899999984 5677888888773 2111 11 133799999999763 222 2334444432 33455
Q ss_pred ----CCEEEEecccccc
Q 002047 763 ----NNVHLIRGNHEAA 775 (975)
Q Consensus 763 ----~~v~llrGNHE~~ 775 (975)
.+++++.|-.|-.
T Consensus 106 L~~~s~fVFVPGpnDPw 122 (291)
T PTZ00235 106 ILEHCYLIFIPGINDPC 122 (291)
T ss_pred HHhcCeEEEECCCCCCC
Confidence 4899999999974
No 234
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=47.76 E-value=43 Score=36.56 Aligned_cols=66 Identities=21% Similarity=0.250 Sum_probs=43.2
Q ss_pred CEEEEecCCCCHH--HHHHHHHHhCCCCCCCCccceeEEEeccccCCC-CChHHHHHHHHHhhhcCCCCEEEEeccccc
Q 002047 699 PIKIFGDLHGQFG--DLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRG-QHSLETITLLLALKVEYPNNVHLIRGNHEA 774 (975)
Q Consensus 699 ~i~vvGDiHG~~~--~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG-~~s~evl~ll~~lk~~~P~~v~llrGNHE~ 774 (975)
+|.+||||=|... .+.+.|..+......+ -+|..||..--| .-+-++...|..+.. .++.+ ||||.
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~D-----~vi~NgEn~~gg~gl~~~~~~~L~~~G~----D~iTl-GNH~f 69 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKID-----FVIANGENAAGGKGITPKIAKELLSAGV----DVITM-GNHTW 69 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCCC-----EEEECCccccCCCCCCHHHHHHHHhcCC----CEEEe-ccccc
Confidence 5789999999874 4455555553221110 244479998766 367888888888743 34444 99986
No 235
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=46.83 E-value=4.5e+02 Score=31.80 Aligned_cols=67 Identities=18% Similarity=0.263 Sum_probs=36.8
Q ss_pred CCCCCcccEEEEeCCc-EEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCC
Q 002047 224 GPGPRYGHVMALVGQR-YLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDA 302 (975)
Q Consensus 224 ~P~~R~~h~~~~~~~~-~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~ 302 (975)
+-.|+++.-+++..-. -||+.|- -.+||+|+++.. .|-..-.... +...+..+ ..-..|+.+||.++
T Consensus 130 ~RIP~~GRDm~y~~~scDly~~gs------g~evYRlNLEqG--rfL~P~~~~~---~~lN~v~i-n~~hgLla~Gt~~g 197 (703)
T KOG2321|consen 130 TRIPKFGRDMKYHKPSCDLYLVGS------GSEVYRLNLEQG--RFLNPFETDS---GELNVVSI-NEEHGLLACGTEDG 197 (703)
T ss_pred eecCcCCccccccCCCccEEEeec------CcceEEEEcccc--cccccccccc---ccceeeee-cCccceEEecccCc
Confidence 3456667777665322 3666553 268999999999 7744311111 11222222 22356788888654
No 236
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=44.90 E-value=37 Score=38.26 Aligned_cols=69 Identities=22% Similarity=0.163 Sum_probs=39.2
Q ss_pred EEEEecCCCCHH------HHHHHHHHhCCCCCCCCccceeEEEeccccCCCCC-------------hHHHHHHHHHhhhc
Q 002047 700 IKIFGDLHGQFG------DLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQH-------------SLETITLLLALKVE 760 (975)
Q Consensus 700 i~vvGDiHG~~~------~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~-------------s~evl~ll~~lk~~ 760 (975)
|+-+-|+||++. .+..+++........ .....-+|..||.+.-++. ..-++.+|-++.
T Consensus 3 IlhtnD~Hg~~~~~gg~ar~a~~i~~~r~~~~~-~~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~~G~~~i~~mN~~g-- 79 (313)
T cd08162 3 LLHTSDGESGLLAEDDAPNFSALVNALKDEAAA-EYDNTLTLSSGDNFIPGPFFNASLDPLIYGDPGRADILILNALG-- 79 (313)
T ss_pred EEEecccccCccccCCHHHHHHHHHHHHHhhhc-cCCCeEEEecCccccCchhhhhhccccccccCChHHHHHHhccC--
Confidence 667889999964 343445443211000 0011246669999875442 344566666663
Q ss_pred CCCCEEEEeccccc
Q 002047 761 YPNNVHLIRGNHEA 774 (975)
Q Consensus 761 ~P~~v~llrGNHE~ 774 (975)
-=.+..||||.
T Consensus 80 ---~Da~tlGNHEF 90 (313)
T cd08162 80 ---VQAIALGNHEF 90 (313)
T ss_pred ---CcEEecccccc
Confidence 33567899996
No 237
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=44.71 E-value=4.1e+02 Score=28.18 Aligned_cols=147 Identities=15% Similarity=0.068 Sum_probs=72.6
Q ss_pred cEEEEECCCCcEEEecCC--CCCCCCccceEEEEeCCEEEEEeccCCCCCcc--ccEEEEEcCCCCCcEEEEEecCCCCC
Q 002047 151 DVHCYDVLTNKWSRITPF--GEPPTPRAAHVATAVGTMVVIQGGIGPAGLSA--EDLHVLDLTQQRPRWHRVVVQGPGPG 226 (975)
Q Consensus 151 dv~~yD~~t~~W~~l~~~--g~~P~pR~~hsa~~~~~~iyv~GG~~~~~~~~--~dv~~yD~~t~~~~W~~v~~~g~~P~ 226 (975)
.+..+|+.+.+++.+... +..+..|..-.++.-++.||+.--........ ..+|+++.. . +...+... +
T Consensus 61 ~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~--~~~~~~~~--~-- 133 (246)
T PF08450_consen 61 GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G--KVTVVADG--L-- 133 (246)
T ss_dssp CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S--EEEEEEEE--E--
T ss_pred ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C--eEEEEecC--c--
Confidence 345679999999988654 21133344434443356777653221111112 569999988 3 24444311 1
Q ss_pred CCcccEEEEeC-CcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCC-cceeEEEEEeCCeEEEecCCCCCC
Q 002047 227 PRYGHVMALVG-QRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPP-CMYATASARSDGLLLLCGGRDASS 304 (975)
Q Consensus 227 ~R~~h~~~~~~-~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~-r~~~~a~~~~~g~lyvfGG~~~~~ 304 (975)
..-..+++-. ++.||+.- ...+.+|+||+......+.........+.. ..-...++-.+|.||+..-
T Consensus 134 -~~pNGi~~s~dg~~lyv~d-----s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~----- 202 (246)
T PF08450_consen 134 -GFPNGIAFSPDGKTLYVAD-----SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW----- 202 (246)
T ss_dssp -SSEEEEEEETTSSEEEEEE-----TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-----
T ss_pred -ccccceEECCcchheeecc-----cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-----
Confidence 1223444443 33677742 234569999996542234322211111111 1233344445789999732
Q ss_pred CCccceEEeecC
Q 002047 305 VPLASAYGLAKH 316 (975)
Q Consensus 305 ~~l~d~~~~~~~ 316 (975)
....++.|++.
T Consensus 203 -~~~~I~~~~p~ 213 (246)
T PF08450_consen 203 -GGGRIVVFDPD 213 (246)
T ss_dssp -TTTEEEEEETT
T ss_pred -CCCEEEEECCC
Confidence 12357777666
No 238
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=44.69 E-value=33 Score=42.77 Aligned_cols=69 Identities=19% Similarity=0.092 Sum_probs=41.8
Q ss_pred ecCCEEEEecCCCCHHH----------------HHHHHHHhCCCCCCCCccceeEEEeccccCCCCChH-----------
Q 002047 696 LKAPIKIFGDLHGQFGD----------------LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSL----------- 748 (975)
Q Consensus 696 l~~~i~vvGDiHG~~~~----------------L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~----------- 748 (975)
+..+|+-..|+||++.. +..+++...-.. ...-+|-.||++...+.+-
T Consensus 24 ~~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~-----~n~llvD~GD~~qGsp~~~~~~~~~~~~g~ 98 (649)
T PRK09420 24 VDLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEA-----KNSVLVDNGDLIQGSPLGDYMAAKGLKAGD 98 (649)
T ss_pred ceEEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhC-----CCEEEEECCCcCCCchhhhhhhhccccCCC
Confidence 45568889999999743 333444432111 1124666999998655431
Q ss_pred --HHHHHHHHhhhcCCCCEEEEeccccc
Q 002047 749 --ETITLLLALKVEYPNNVHLIRGNHEA 774 (975)
Q Consensus 749 --evl~ll~~lk~~~P~~v~llrGNHE~ 774 (975)
-++.+|-.|. -=....||||.
T Consensus 99 ~~p~i~amN~lg-----yDa~tlGNHEF 121 (649)
T PRK09420 99 VHPVYKAMNTLD-----YDVGNLGNHEF 121 (649)
T ss_pred cchHHHHHHhcC-----CcEEeccchhh
Confidence 2566666653 44667899996
No 239
>PTZ00420 coronin; Provisional
Probab=43.11 E-value=7.2e+02 Score=30.56 Aligned_cols=61 Identities=10% Similarity=0.150 Sum_probs=33.7
Q ss_pred EEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCC
Q 002047 186 MVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAK 264 (975)
Q Consensus 186 ~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~ 264 (975)
.+++.||. ...+.+||+.+.. .-..+. .+ ..-.++....++.+++.++.++ .+..||+.+.
T Consensus 139 ~iLaSgS~------DgtIrIWDl~tg~-~~~~i~----~~--~~V~SlswspdG~lLat~s~D~-----~IrIwD~Rsg 199 (568)
T PTZ00420 139 YIMCSSGF------DSFVNIWDIENEK-RAFQIN----MP--KKLSSLKWNIKGNLLSGTCVGK-----HMHIIDPRKQ 199 (568)
T ss_pred eEEEEEeC------CCeEEEEECCCCc-EEEEEe----cC--CcEEEEEECCCCCEEEEEecCC-----EEEEEECCCC
Confidence 55566664 3568899998753 122221 11 1122333333346777776543 5889999876
No 240
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=42.89 E-value=33 Score=42.56 Aligned_cols=66 Identities=21% Similarity=0.097 Sum_probs=38.9
Q ss_pred CEEEEecCCCCHHH----------------HHHHHHHhCCCCCCCCccceeEEEeccccCCCCCh-------------HH
Q 002047 699 PIKIFGDLHGQFGD----------------LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS-------------LE 749 (975)
Q Consensus 699 ~i~vvGDiHG~~~~----------------L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s-------------~e 749 (975)
+|+-.-||||++.. +..+++...-.. ...-+|-.||.+..-+.+ .-
T Consensus 4 ~Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~~R~e~-----~n~lllD~GD~~qGsp~~~~~~~~~~~~~~~~p 78 (626)
T TIGR01390 4 RIVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQARAEV-----KNSVLVDNGDLIQGSPLGDYMAAQGLKAGQMHP 78 (626)
T ss_pred EEEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHHHHhhC-----CCeEEEECCCcCCCccchhhhhhccccCCCcCh
Confidence 57788999999753 333444432111 112456699999855433 22
Q ss_pred HHHHHHHhhhcCCCCEEEEeccccc
Q 002047 750 TITLLLALKVEYPNNVHLIRGNHEA 774 (975)
Q Consensus 750 vl~ll~~lk~~~P~~v~llrGNHE~ 774 (975)
++.+|-.|. -=....||||.
T Consensus 79 ~~~~mN~lg-----yDa~tlGNHEF 98 (626)
T TIGR01390 79 VYKAMNLLK-----YDVGNLGNHEF 98 (626)
T ss_pred HHHHHhhcC-----ccEEecccccc
Confidence 455555553 33567899996
No 241
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=41.98 E-value=35 Score=39.90 Aligned_cols=34 Identities=6% Similarity=0.100 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCCeEEEEeccccccceEEecCCeE
Q 002047 885 DRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHL 918 (975)
Q Consensus 885 ~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~ 918 (975)
..+++.+.++++++++-||.-.-+++..-.|.++
T Consensus 322 ~~LE~l~~~~~VDvvf~GHvH~YER~~piyn~~~ 355 (452)
T KOG1378|consen 322 EGLEPLFVKYKVDVVFWGHVHRYERFCPIYNNTC 355 (452)
T ss_pred HHHHHHHHHhceeEEEeccceehhccchhhccee
Confidence 3699999999999999999988777766666665
No 242
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=41.66 E-value=3.7e+02 Score=29.55 Aligned_cols=111 Identities=14% Similarity=0.068 Sum_probs=66.5
Q ss_pred EEeCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCccceEEe
Q 002047 234 ALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGL 313 (975)
Q Consensus 234 ~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~d~~~~ 313 (975)
....++.||.--|..|. +.+.+||+.+. +=.+...++. +.+.=+++..+++||..--..+ ..+.|
T Consensus 51 ~~~~~g~LyESTG~yG~---S~l~~~d~~tg--~~~~~~~l~~----~~FgEGit~~~d~l~qLTWk~~------~~f~y 115 (264)
T PF05096_consen 51 EFLDDGTLYESTGLYGQ---SSLRKVDLETG--KVLQSVPLPP----RYFGEGITILGDKLYQLTWKEG------TGFVY 115 (264)
T ss_dssp EEEETTEEEEEECSTTE---EEEEEEETTTS--SEEEEEE-TT----T--EEEEEEETTEEEEEESSSS------EEEEE
T ss_pred EecCCCEEEEeCCCCCc---EEEEEEECCCC--cEEEEEECCc----cccceeEEEECCEEEEEEecCC------eEEEE
Confidence 34344589998887764 57889999998 4443333332 4677778888999999855433 34566
Q ss_pred ecCCCCeEEEEECCCCCCCCcceeeEEEeCCEEEEEcCcCCCCCccccCCcEEEEECCCCeE
Q 002047 314 AKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVW 375 (975)
Q Consensus 314 ~~~~~~~W~w~~~~g~~P~~R~~hs~v~~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~W 375 (975)
+..+- +-...- +.+..+.+++..+..|++.-| ++.++.+||++.+=
T Consensus 116 d~~tl---~~~~~~---~y~~EGWGLt~dg~~Li~SDG----------S~~L~~~dP~~f~~ 161 (264)
T PF05096_consen 116 DPNTL---KKIGTF---PYPGEGWGLTSDGKRLIMSDG----------SSRLYFLDPETFKE 161 (264)
T ss_dssp ETTTT---EEEEEE---E-SSS--EEEECSSCEEEE-S----------SSEEEEE-TTT-SE
T ss_pred ccccc---eEEEEE---ecCCcceEEEcCCCEEEEECC----------ccceEEECCcccce
Confidence 55432 222111 233467788877888888766 45699999987653
No 243
>PRK04043 tolB translocation protein TolB; Provisional
Probab=41.50 E-value=6.5e+02 Score=29.56 Aligned_cols=192 Identities=10% Similarity=0.092 Sum_probs=97.5
Q ss_pred cCcEEEEECCCCcEEEecCCCCCCCCccceEEEEeC-CEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCC
Q 002047 149 TADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVG-TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 227 (975)
Q Consensus 149 ~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~-~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~ 227 (975)
..++|.+|+.+++=+.+... ..........-+ .+|++.-... + ..++|++|+.+.. ++++. ..+.
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~----~g~~~~~~~SPDG~~la~~~~~~--g--~~~Iy~~dl~~g~--~~~LT---~~~~- 277 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASS----QGMLVVSDVSKDGSKLLLTMAPK--G--QPDIYLYDTNTKT--LTQIT---NYPG- 277 (419)
T ss_pred CCEEEEEECCCCcEEEEecC----CCcEEeeEECCCCCEEEEEEccC--C--CcEEEEEECCCCc--EEEcc---cCCC-
Confidence 35899999998877777542 111111222223 3665553321 1 3689999998764 87775 2221
Q ss_pred CcccEEEEe-CCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCC-
Q 002047 228 RYGHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSV- 305 (975)
Q Consensus 228 R~~h~~~~~-~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~- 305 (975)
.......- ++++||+.....+ ..++|++|+.+. +.+++...+. . .. ....+|+.+++-.......
T Consensus 278 -~d~~p~~SPDG~~I~F~Sdr~g---~~~Iy~~dl~~g--~~~rlt~~g~-----~-~~-~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 278 -IDVNGNFVEDDKRIVFVSDRLG---YPNIFMKKLNSG--SVEQVVFHGK-----N-NS-SVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred -ccCccEECCCCCEEEEEECCCC---CceEEEEECCCC--CeEeCccCCC-----c-Cc-eECCCCCEEEEEEcCCCccc
Confidence 12222222 3446776654332 368999999988 7777754332 1 22 3333454444433322110
Q ss_pred --CccceEEeecCCCCeEEEEECCCCCCCCcceeeEEEeCCEEEEEcCcCCCCCccccCCcEEEEECCCCeEEEcc
Q 002047 306 --PLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTK 379 (975)
Q Consensus 306 --~l~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v~~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 379 (975)
...+++.++.... .+ ..+... .....-...-+++.+++-...+. ...++++++..+.=..+.
T Consensus 345 ~~~~~~I~v~d~~~g-~~--~~LT~~---~~~~~p~~SPDG~~I~f~~~~~~------~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 345 GKNTFNLYLISTNSD-YI--RRLTAN---GVNQFPRFSSDGGSIMFIKYLGN------QSALGIIRLNYNKSFLFP 408 (419)
T ss_pred CCCCcEEEEEECCCC-Ce--EECCCC---CCcCCeEECCCCCEEEEEEccCC------cEEEEEEecCCCeeEEee
Confidence 1246677765443 33 333321 11111222235554444332221 345899998877555554
No 244
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=41.48 E-value=34 Score=45.72 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=15.9
Q ss_pred HHHHHHHHHH-cCCeEEEEecccc
Q 002047 884 PDRVMEFCNN-NDLQLIVRAHECV 906 (975)
Q Consensus 884 ~~~~~~fl~~-~~l~~iiR~H~~~ 906 (975)
++++.+..++ -++++||-||+-.
T Consensus 256 en~~~~la~~~~gID~Il~GHsH~ 279 (1163)
T PRK09419 256 EDSVYDLAEKTKGIDAIVAGHQHG 279 (1163)
T ss_pred chHHHHHHHhCCCCcEEEeCCCcc
Confidence 3455566644 5899999999643
No 245
>PRK13684 Ycf48-like protein; Provisional
Probab=40.70 E-value=5.9e+02 Score=28.84 Aligned_cols=177 Identities=11% Similarity=0.124 Sum_probs=78.9
Q ss_pred CCCcEEEecCCCCCCCCccceEEEEeCC-EEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEe
Q 002047 158 LTNKWSRITPFGEPPTPRAAHVATAVGT-MVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALV 236 (975)
Q Consensus 158 ~t~~W~~l~~~g~~P~pR~~hsa~~~~~-~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~ 236 (975)
....|+.+.. |.......++..+. ..|++|-. .. +|-....-..|+.+... +|........+.+
T Consensus 33 ~~~~W~~~~~----~~~~~l~~v~F~d~~~g~avG~~-------G~--il~T~DgG~tW~~~~~~--~~~~~~~l~~v~~ 97 (334)
T PRK13684 33 SSSPWQVIDL----PTEANLLDIAFTDPNHGWLVGSN-------RT--LLETNDGGETWEERSLD--LPEENFRLISISF 97 (334)
T ss_pred cCCCcEEEec----CCCCceEEEEEeCCCcEEEEECC-------CE--EEEEcCCCCCceECccC--CcccccceeeeEE
Confidence 3457988853 33344455555554 66777632 12 33332221249987522 2222222223333
Q ss_pred CCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCccceEEeecC
Q 002047 237 GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKH 316 (975)
Q Consensus 237 ~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~d~~~~~~~ 316 (975)
.++..|+.|.. ..+++=+-.-. +|+++......|. .........++.+++.|.. ..++.-.+.
T Consensus 98 ~~~~~~~~G~~------g~i~~S~DgG~--tW~~~~~~~~~~~--~~~~i~~~~~~~~~~~g~~-------G~i~~S~Dg 160 (334)
T PRK13684 98 KGDEGWIVGQP------SLLLHTTDGGK--NWTRIPLSEKLPG--SPYLITALGPGTAEMATNV-------GAIYRTTDG 160 (334)
T ss_pred cCCcEEEeCCC------ceEEEECCCCC--CCeEccCCcCCCC--CceEEEEECCCcceeeecc-------ceEEEECCC
Confidence 33356766532 22444322234 8998853211111 1112233344556666542 224444333
Q ss_pred CCCeEEEEECCCCCCCCcceeeEEEeCCEEEEEcCcCCCCCccccCCcEEEE-ECCCCeEEEccc
Q 002047 317 RDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVL-DTAAGVWCDTKS 380 (975)
Q Consensus 317 ~~~~W~w~~~~g~~P~~R~~hs~v~~~~~L~V~GG~~~~~~~~~~~~dv~~y-D~~t~~W~~v~~ 380 (975)
.. +|...... ..-..+.+....+..++..|..+ .++.. |....+|+.+..
T Consensus 161 G~---tW~~~~~~--~~g~~~~i~~~~~g~~v~~g~~G---------~i~~s~~~gg~tW~~~~~ 211 (334)
T PRK13684 161 GK---NWEALVED--AAGVVRNLRRSPDGKYVAVSSRG---------NFYSTWEPGQTAWTPHQR 211 (334)
T ss_pred CC---CceeCcCC--CcceEEEEEECCCCeEEEEeCCc---------eEEEEcCCCCCeEEEeeC
Confidence 33 45554422 22234445555444444444322 13332 444568988754
No 246
>PTZ00421 coronin; Provisional
Probab=39.87 E-value=7.5e+02 Score=29.81 Aligned_cols=51 Identities=20% Similarity=0.165 Sum_probs=27.8
Q ss_pred EEEEEcCCCCCCCCCcEEEEECCCCCcEEE-EccCCCCCCCCcceeEEEEEeCCeEEEecCCCC
Q 002047 240 YLMAIGGNDGKRPLADVWALDTAAKPYEWR-KLEPEGEGPPPCMYATASARSDGLLLLCGGRDA 302 (975)
Q Consensus 240 ~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~-~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~ 302 (975)
.+++.||.++ .+..||+.+. +-. .+..... .........++.+++.|+.++
T Consensus 139 ~iLaSgs~Dg-----tVrIWDl~tg--~~~~~l~~h~~-----~V~sla~spdG~lLatgs~Dg 190 (493)
T PTZ00421 139 NVLASAGADM-----VVNVWDVERG--KAVEVIKCHSD-----QITSLEWNLDGSLLCTTSKDK 190 (493)
T ss_pred CEEEEEeCCC-----EEEEEECCCC--eEEEEEcCCCC-----ceEEEEEECCCCEEEEecCCC
Confidence 4777777664 5788888776 321 2211111 122223344677888887654
No 247
>PRK03629 tolB translocation protein TolB; Provisional
Probab=39.46 E-value=6.9e+02 Score=29.30 Aligned_cols=189 Identities=12% Similarity=0.136 Sum_probs=89.2
Q ss_pred CcEEEEECCCCcEEEecCCCCCCCCccceEEEEe-CCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCC
Q 002047 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAV-GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPR 228 (975)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~-~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R 228 (975)
..+|.+|+.+++-+.+... +.. .......- +.+|++..... ...++|++|+.+.. .+++. ..+
T Consensus 223 ~~i~i~dl~~G~~~~l~~~---~~~-~~~~~~SPDG~~La~~~~~~----g~~~I~~~d~~tg~--~~~lt---~~~--- 286 (429)
T PRK03629 223 SALVIQTLANGAVRQVASF---PRH-NGAPAFSPDGSKLAFALSKT----GSLNLYVMDLASGQ--IRQVT---DGR--- 286 (429)
T ss_pred cEEEEEECCCCCeEEccCC---CCC-cCCeEECCCCCEEEEEEcCC----CCcEEEEEECCCCC--EEEcc---CCC---
Confidence 5788899888876666543 111 11111222 33565543321 12469999998763 55554 111
Q ss_pred cccEEEE-e-CCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCC
Q 002047 229 YGHVMAL-V-GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVP 306 (975)
Q Consensus 229 ~~h~~~~-~-~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~ 306 (975)
....... . +++.|+......+ ...+|.+|+.+. ..+++...+. .........+|+.+++.+....
T Consensus 287 ~~~~~~~wSPDG~~I~f~s~~~g---~~~Iy~~d~~~g--~~~~lt~~~~-----~~~~~~~SpDG~~Ia~~~~~~g--- 353 (429)
T PRK03629 287 SNNTEPTWFPDSQNLAYTSDQAG---RPQVYKVNINGG--APQRITWEGS-----QNQDADVSSDGKFMVMVSSNGG--- 353 (429)
T ss_pred CCcCceEECCCCCEEEEEeCCCC---CceEEEEECCCC--CeEEeecCCC-----CccCEEECCCCCEEEEEEccCC---
Confidence 1112222 2 3334444332222 358999999887 5556543221 1112233345555555443222
Q ss_pred ccceEEeecCCCCeEEEEECCCCCCCCcceeeEEEeCCEEEEEcCcCCCCCccccCCcEEEEECCCCeEEEcc
Q 002047 307 LASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTK 379 (975)
Q Consensus 307 l~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v~~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 379 (975)
..+++.++.... .++ .+... .........-+++++++.+..+. ...+++.++....=..+.
T Consensus 354 ~~~I~~~dl~~g-~~~--~Lt~~---~~~~~p~~SpDG~~i~~~s~~~~------~~~l~~~~~~G~~~~~l~ 414 (429)
T PRK03629 354 QQHIAKQDLATG-GVQ--VLTDT---FLDETPSIAPNGTMVIYSSSQGM------GSVLNLVSTDGRFKARLP 414 (429)
T ss_pred CceEEEEECCCC-CeE--EeCCC---CCCCCceECCCCCEEEEEEcCCC------ceEEEEEECCCCCeEECc
Confidence 135666655433 333 22211 11111122346677777665432 234777777655434443
No 248
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=39.29 E-value=5.8e+02 Score=29.15 Aligned_cols=94 Identities=11% Similarity=0.196 Sum_probs=49.8
Q ss_pred cEEEEECCCCcEEEecCCCCCCCCccceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCcc
Q 002047 151 DVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYG 230 (975)
Q Consensus 151 dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~ 230 (975)
--|.++..+..|--.-+- ..--.-..+..+++.+++.|++ ...+.++...+...+|......+.+---+.+
T Consensus 87 ~AflW~~~~ge~~~eltg---HKDSVt~~~FshdgtlLATGdm------sG~v~v~~~stg~~~~~~~~e~~dieWl~WH 157 (399)
T KOG0296|consen 87 LAFLWDISTGEFAGELTG---HKDSVTCCSFSHDGTLLATGDM------SGKVLVFKVSTGGEQWKLDQEVEDIEWLKWH 157 (399)
T ss_pred eEEEEEccCCcceeEecC---CCCceEEEEEccCceEEEecCC------CccEEEEEcccCceEEEeecccCceEEEEec
Confidence 457788888776443221 1111122233346688888887 3467777776655455544212222111111
Q ss_pred cEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCC
Q 002047 231 HVMALVGQRYLMAIGGNDGKRPLADVWALDTAAK 264 (975)
Q Consensus 231 h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~ 264 (975)
....++++|-.+| .+|+|.+.+.
T Consensus 158 ------p~a~illAG~~DG-----svWmw~ip~~ 180 (399)
T KOG0296|consen 158 ------PRAHILLAGSTDG-----SVWMWQIPSQ 180 (399)
T ss_pred ------ccccEEEeecCCC-----cEEEEECCCc
Confidence 1125777776665 6899988775
No 249
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=38.60 E-value=9e+02 Score=30.38 Aligned_cols=124 Identities=15% Similarity=0.205 Sum_probs=65.6
Q ss_pred EEECCCCcEEEecCCCCC-CCCcc-------ce-----EEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEe
Q 002047 154 CYDVLTNKWSRITPFGEP-PTPRA-------AH-----VATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVV 220 (975)
Q Consensus 154 ~yD~~t~~W~~l~~~g~~-P~pR~-------~h-----sa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~ 220 (975)
.+--.+..|..+...+.+ |.+-. +| +.++..+.+.++-|- .+.+-+++..+.. .+.
T Consensus 340 ~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga------~~SikiWn~~t~k----ciR- 408 (888)
T KOG0306|consen 340 LLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA------GESIKIWNRDTLK----CIR- 408 (888)
T ss_pred EeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC------CCcEEEEEccCcc----eeE-
Confidence 344456678887763321 22211 11 344445555555553 2456677776542 333
Q ss_pred cCCCCCCCcccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCC
Q 002047 221 QGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGR 300 (975)
Q Consensus 221 ~g~~P~~R~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~ 300 (975)
.++.. |.+++..+.+...+|.|+.+| .+..||+.+. . .+..... ....-.+.....+++-++.||.
T Consensus 409 --Ti~~~-y~l~~~Fvpgd~~Iv~G~k~G-----el~vfdlaS~--~--l~Eti~A--HdgaIWsi~~~pD~~g~vT~sa 474 (888)
T KOG0306|consen 409 --TITCG-YILASKFVPGDRYIVLGTKNG-----ELQVFDLASA--S--LVETIRA--HDGAIWSISLSPDNKGFVTGSA 474 (888)
T ss_pred --Eeccc-cEEEEEecCCCceEEEeccCC-----ceEEEEeehh--h--hhhhhhc--cccceeeeeecCCCCceEEecC
Confidence 22222 888888888767777787765 5788888765 1 1111100 0011222334457777777776
Q ss_pred CC
Q 002047 301 DA 302 (975)
Q Consensus 301 ~~ 302 (975)
+.
T Consensus 475 Dk 476 (888)
T KOG0306|consen 475 DK 476 (888)
T ss_pred Cc
Confidence 54
No 250
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=37.93 E-value=7.2e+02 Score=29.06 Aligned_cols=90 Identities=14% Similarity=0.127 Sum_probs=46.1
Q ss_pred EEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCccceEEeecCCCCeE---EEEECCCCCCCCcc-eeeEEEe
Q 002047 267 EWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRW---EWAIAPGVSPSPRY-QHAAVFV 342 (975)
Q Consensus 267 ~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~d~~~~~~~~~~~W---~w~~~~g~~P~~R~-~hs~v~~ 342 (975)
.|+.+..... +....+....++.++++|.... ++.-.+ ....| +|.+..- +..++ -.+++..
T Consensus 271 ~W~~~~~~~~----~~l~~v~~~~dg~l~l~g~~G~-------l~~S~d-~G~~~~~~~f~~~~~--~~~~~~l~~v~~~ 336 (398)
T PLN00033 271 YWQPHNRASA----RRIQNMGWRADGGLWLLTRGGG-------LYVSKG-TGLTEEDFDFEEADI--KSRGFGILDVGYR 336 (398)
T ss_pred ceEEecCCCc----cceeeeeEcCCCCEEEEeCCce-------EEEecC-CCCcccccceeeccc--CCCCcceEEEEEc
Confidence 4887764432 3334444456788888775321 222211 12234 3444431 12222 2333344
Q ss_pred -CCEEEEEcCcCCCCCccccCCcEEEEECCCCeEEEccc
Q 002047 343 -NARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKS 380 (975)
Q Consensus 343 -~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 380 (975)
++.+++.|.. .-++.-...-.+|+++..
T Consensus 337 ~d~~~~a~G~~----------G~v~~s~D~G~tW~~~~~ 365 (398)
T PLN00033 337 SKKEAWAAGGS----------GILLRSTDGGKSWKRDKG 365 (398)
T ss_pred CCCcEEEEECC----------CcEEEeCCCCcceeEccc
Confidence 5678888763 125556666779998764
No 251
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=36.34 E-value=3.2e+02 Score=29.42 Aligned_cols=137 Identities=15% Similarity=0.224 Sum_probs=69.6
Q ss_pred cEEEEECC-CCcEEEecCCCCCCCCccceEEEE-e-CCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCC
Q 002047 151 DVHCYDVL-TNKWSRITPFGEPPTPRAAHVATA-V-GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 227 (975)
Q Consensus 151 dv~~yD~~-t~~W~~l~~~g~~P~pR~~hsa~~-~-~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~ 227 (975)
....|... -.+|+...... ......+.+.+ . ++.|+++--.. ... .++.+-....-..|+.+... .+|.+
T Consensus 135 ~~~~~S~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~-~~~---~~~~~~S~D~G~TWs~~~~~-~~~~~ 207 (275)
T PF13088_consen 135 AFVYYSDDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTE-GND---DIYISRSTDGGRTWSPPQPT-NLPNP 207 (275)
T ss_dssp EEEEEESSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEEC-SST---EEEEEEESSTTSS-EEEEEE-ECSSC
T ss_pred eEEEEeCCCCceeecccccc--ccCCcceeEEEECCCCcEEEEEEcc-CCC---cEEEEEECCCCCcCCCceec-ccCcc
Confidence 33445554 34598887642 22244444443 3 45888776542 111 34443333322369986544 56777
Q ss_pred CcccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCC-cceeEEEEEeCCeEEE
Q 002047 228 RYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPP-CMYATASARSDGLLLL 296 (975)
Q Consensus 228 R~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~-r~~~~a~~~~~g~lyv 296 (975)
.....++.+.++.++++........--.++.-.-... +|.........+.. ..|-.++...+++|||
T Consensus 208 ~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~--tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 208 NSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGK--TWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp CEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCE--EEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred cCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCC--cCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 7777777766667777776321221122222222244 89876444332211 2444445555778886
No 252
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=36.13 E-value=2e+02 Score=33.60 Aligned_cols=156 Identities=17% Similarity=0.207 Sum_probs=76.0
Q ss_pred cEEEEeCCcEEEEEcC-CCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeE--E-EEEeCCeEEEecCCCCCCCC
Q 002047 231 HVMALVGQRYLMAIGG-NDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYAT--A-SARSDGLLLLCGGRDASSVP 306 (975)
Q Consensus 231 h~~~~~~~~~lyV~GG-~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~--a-~~~~~g~lyvfGG~~~~~~~ 306 (975)
|+.+..+.+ .|++|| ..+ ++|.+.+.+. .- +.... +-|.. + ....++.+++.||.++.-
T Consensus 85 ~al~s~n~G-~~l~ag~i~g-----~lYlWelssG--~L--L~v~~-----aHYQ~ITcL~fs~dgs~iiTgskDg~V-- 147 (476)
T KOG0646|consen 85 HALASSNLG-YFLLAGTISG-----NLYLWELSSG--IL--LNVLS-----AHYQSITCLKFSDDGSHIITGSKDGAV-- 147 (476)
T ss_pred eeeecCCCc-eEEEeecccC-----cEEEEEeccc--cH--HHHHH-----hhccceeEEEEeCCCcEEEecCCCccE--
Confidence 555555664 666666 443 6777777776 11 11110 11211 1 234578888888877653
Q ss_pred ccceEEeecCCCCeEEEEECCCCCCCCc---ceeeEEEeCCEEEEEcCcCCCCCccccCCcEEEEECCCCeEEEcccCcC
Q 002047 307 LASAYGLAKHRDGRWEWAIAPGVSPSPR---YQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVT 383 (975)
Q Consensus 307 l~d~~~~~~~~~~~W~w~~~~g~~P~~R---~~hs~v~~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 383 (975)
-+|.+-+.-+ ......|.|+ ..|+..+.+ .-.=+||.+..-.....-..+-+||+..+.-..--.
T Consensus 148 --~vW~l~~lv~------a~~~~~~~p~~~f~~HtlsITD-l~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~--- 215 (476)
T KOG0646|consen 148 --LVWLLTDLVS------ADNDHSVKPLHIFSDHTLSITD-LQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT--- 215 (476)
T ss_pred --EEEEEEeecc------cccCCCccceeeeccCcceeEE-EEecCCCccceEEEecCCceEEEEEeccceeeEEEe---
Confidence 1232211100 0000023333 345444432 222335533221111123447788888885433222
Q ss_pred CCCCCCCccccCCCCCccCCCccceeEEEEE-CCEEEEEcCCCCCCCccceEe
Q 002047 384 SPRTGRYSADAAGGDAAVELTRRCRHAAAAV-GDLIFIYGGLRGGVLLDDLLV 435 (975)
Q Consensus 384 ~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~-~~~LyV~GG~~~~~~l~Dv~~ 435 (975)
.++.-+++++- ..+.+.+|+..|..+.++++.
T Consensus 216 --------------------fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~ 248 (476)
T KOG0646|consen 216 --------------------FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFK 248 (476)
T ss_pred --------------------cCCcceeEEEcccccEEEecCCcceEEeeehhc
Confidence 25555666655 457777788887766666654
No 253
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=35.68 E-value=1.1e+02 Score=31.63 Aligned_cols=92 Identities=22% Similarity=0.288 Sum_probs=63.2
Q ss_pred eeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccccccchhhhcCChHH---HHH---------HhCCcccchh
Q 002047 732 IDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIE---CIE---------RMGERDGIWA 799 (975)
Q Consensus 732 ~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e---~~~---------~~g~~~~~~~ 799 (975)
..+|||| -|-+.-|.+.||-+|+.+|-.+-++ .|+-|.+..+...-|... |.. ..|...-..+
T Consensus 40 ~~lVvlG----SGGHT~EMlrLl~~l~~~y~~r~yI-~a~tD~mS~~k~~~F~~~~a~~~a~~~~ipRsReVgQS~ltSv 114 (211)
T KOG3339|consen 40 STLVVLG----SGGHTGEMLRLLEALQDLYSPRSYI-AADTDEMSEQKARSFELSLAHCKAKNYEIPRSREVGQSWLTSV 114 (211)
T ss_pred eEEEEEc----CCCcHHHHHHHHHHHHhhcCceEEE-EecCchhhHHHHHhhhccccccchhheecchhhhhhhhhhhhH
Confidence 4799998 5889999999999999999766655 899999887765544321 111 1122222345
Q ss_pred hhhhhccccccceEEEEcceEEEecC-Ccc
Q 002047 800 WHRINRLFNWLPLAALIEKKIICMHG-GIG 828 (975)
Q Consensus 800 ~~~~~~~f~~LPlaa~i~~~il~vHg-Gi~ 828 (975)
|..+..+.-.+++...+.-+++.+-| |..
T Consensus 115 ~Tti~all~s~~lv~RirPdlil~NGPGTC 144 (211)
T KOG3339|consen 115 FTTIWALLQSFVLVWRIRPDLILCNGPGTC 144 (211)
T ss_pred HHHHHHHHHHheEEEecCCCEEEECCCCcE
Confidence 56666777777888777777777777 554
No 254
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=35.64 E-value=9e+02 Score=29.82 Aligned_cols=121 Identities=21% Similarity=0.334 Sum_probs=63.2
Q ss_pred CCEEEEEeccCCCCCccccEEEEEcCCCC----CcEEEEEecCCCC-CCCccc-EEEEeCCcEEEEEcCCCCCCCCCcEE
Q 002047 184 GTMVVIQGGIGPAGLSAEDLHVLDLTQQR----PRWHRVVVQGPGP-GPRYGH-VMALVGQRYLMAIGGNDGKRPLADVW 257 (975)
Q Consensus 184 ~~~iyv~GG~~~~~~~~~dv~~yD~~t~~----~~W~~v~~~g~~P-~~R~~h-~~~~~~~~~lyV~GG~~g~~~~ndv~ 257 (975)
++.+++-||. ...+.+||+.+.+ .....+++. .++ .++..- +.+.-..+.++|-||.. .++-
T Consensus 129 ~~~lvaSgGL------D~~IflWDin~~~~~l~~s~n~~t~~-sl~sG~k~siYSLA~N~t~t~ivsGgte-----k~lr 196 (735)
T KOG0308|consen 129 NNELVASGGL------DRKIFLWDINTGTATLVASFNNVTVN-SLGSGPKDSIYSLAMNQTGTIIVSGGTE-----KDLR 196 (735)
T ss_pred CceeEEecCC------CccEEEEEccCcchhhhhhccccccc-cCCCCCccceeeeecCCcceEEEecCcc-----cceE
Confidence 5688999997 3568888887542 112233322 233 344322 22222334688888865 4788
Q ss_pred EEECCCCCcEEEEccCCCCCCCCcceeEE-----EEEeCCeEEEecCCCCCCC-----CccceEEeecCCCCeEEEEECC
Q 002047 258 ALDTAAKPYEWRKLEPEGEGPPPCMYATA-----SARSDGLLLLCGGRDASSV-----PLASAYGLAKHRDGRWEWAIAP 327 (975)
Q Consensus 258 ~yDl~s~~~~W~~v~~~~~~P~~r~~~~a-----~~~~~g~lyvfGG~~~~~~-----~l~d~~~~~~~~~~~W~w~~~~ 327 (975)
.||+.+.. +--++ ++|+- .+..+|.-.+.|+.++.-. .-..+.-|..++.+.|.|...+
T Consensus 197 ~wDprt~~-kimkL----------rGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 197 LWDPRTCK-KIMKL----------RGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP 265 (735)
T ss_pred Eecccccc-ceeee----------eccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC
Confidence 99998861 11111 22222 2334555566666554320 1122233455677778776653
No 255
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=35.05 E-value=57 Score=41.60 Aligned_cols=68 Identities=22% Similarity=0.125 Sum_probs=39.8
Q ss_pred cCCEEEEecCCCCHHH----------------HHHHHHHhCCCCCCCCccceeEEEeccccCCCCCh-------------
Q 002047 697 KAPIKIFGDLHGQFGD----------------LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS------------- 747 (975)
Q Consensus 697 ~~~i~vvGDiHG~~~~----------------L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s------------- 747 (975)
+-+|+-..||||++.. +..+++...-.. ...-+|..||++..-+..
T Consensus 115 ~LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~-----~NtLllD~GD~iQGSpl~~~~a~~~~~~~g~ 189 (814)
T PRK11907 115 DVRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKEN-----PNVVLVDNGDTIQGTPLGTYKAIVDPVEEGE 189 (814)
T ss_pred EEEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhC-----CCEEEEecCCCCCCCcccchhhhccccccCc
Confidence 3467889999999643 222334332111 112466699999754332
Q ss_pred -HHHHHHHHHhhhcCCCCEEEEeccccc
Q 002047 748 -LETITLLLALKVEYPNNVHLIRGNHEA 774 (975)
Q Consensus 748 -~evl~ll~~lk~~~P~~v~llrGNHE~ 774 (975)
.-++.+|-.|. .-....||||.
T Consensus 190 ~~P~i~amN~LG-----yDA~tLGNHEF 212 (814)
T PRK11907 190 QHPMYAALEALG-----FDAGTLGNHEF 212 (814)
T ss_pred chHHHHHHhccC-----CCEEEechhhc
Confidence 12566666653 34577899996
No 256
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=33.87 E-value=7.9e+02 Score=28.34 Aligned_cols=201 Identities=14% Similarity=0.099 Sum_probs=98.7
Q ss_pred CcEEEEECCCCcEEEecCCCCCCCCccceE-EEEeCC-EEEEEeccCCC-----CCccccEEEEEcCCCCCcEEEEEecC
Q 002047 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHV-ATAVGT-MVVIQGGIGPA-----GLSAEDLHVLDLTQQRPRWHRVVVQG 222 (975)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hs-a~~~~~-~iyv~GG~~~~-----~~~~~dv~~yD~~t~~~~W~~v~~~g 222 (975)
..++++|+.+++...-. ..+...+ ++-.++ +.+++...... ...-..+|++.+.+...+=..+-
T Consensus 150 ~~l~v~Dl~tg~~l~d~------i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvf--- 220 (414)
T PF02897_consen 150 YTLRVFDLETGKFLPDG------IENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVF--- 220 (414)
T ss_dssp EEEEEEETTTTEEEEEE------EEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEE---
T ss_pred EEEEEEECCCCcCcCCc------ccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEE---
Confidence 46899999998543321 1122222 333333 55555444332 12256889999887531212222
Q ss_pred CCCCCCc--ccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCC---CcEEEEccCCCCCCCCcceeEEEEEeCCeEEEe
Q 002047 223 PGPGPRY--GHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAK---PYEWRKLEPEGEGPPPCMYATASARSDGLLLLC 297 (975)
Q Consensus 223 ~~P~~R~--~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~---~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvf 297 (975)
..+.... -.....-+++.|+|.-. .+.. .+++|.+|+... ...|..+.+... .....+...++.+|+.
T Consensus 221 e~~~~~~~~~~~~~s~d~~~l~i~~~-~~~~-~s~v~~~d~~~~~~~~~~~~~l~~~~~-----~~~~~v~~~~~~~yi~ 293 (414)
T PF02897_consen 221 EEPDEPFWFVSVSRSKDGRYLFISSS-SGTS-ESEVYLLDLDDGGSPDAKPKLLSPRED-----GVEYYVDHHGDRLYIL 293 (414)
T ss_dssp C-TTCTTSEEEEEE-TTSSEEEEEEE-SSSS-EEEEEEEECCCTTTSS-SEEEEEESSS-----S-EEEEEEETTEEEEE
T ss_pred eecCCCcEEEEEEecCcccEEEEEEE-cccc-CCeEEEEeccccCCCcCCcEEEeCCCC-----ceEEEEEccCCEEEEe
Confidence 1222222 22222233434444332 2222 589999999873 347888865332 2223333448899987
Q ss_pred cCCCCCCCCccceEEeecCCCC--eEEEEECCCCCCCCcceeeEEEeCCEEEEEcCcCCCCCccccCCcEEEEECC-CCe
Q 002047 298 GGRDASSVPLASAYGLAKHRDG--RWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTA-AGV 374 (975)
Q Consensus 298 GG~~~~~~~l~d~~~~~~~~~~--~W~w~~~~g~~P~~R~~hs~v~~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~-t~~ 374 (975)
-..+. ....++.++..... .|.-..++.. ....--.+...+++|++.-=.++ ...|.+||+. +..
T Consensus 294 Tn~~a---~~~~l~~~~l~~~~~~~~~~~l~~~~--~~~~l~~~~~~~~~Lvl~~~~~~-------~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 294 TNDDA---PNGRLVAVDLADPSPAEWWTVLIPED--EDVSLEDVSLFKDYLVLSYRENG-------SSRLRVYDLDDGKE 361 (414)
T ss_dssp E-TT----TT-EEEEEETTSTSGGGEEEEEE--S--SSEEEEEEEEETTEEEEEEEETT-------EEEEEEEETT-TEE
T ss_pred eCCCC---CCcEEEEecccccccccceeEEcCCC--CceeEEEEEEECCEEEEEEEECC-------ccEEEEEECCCCcE
Confidence 66333 23445555444433 3543333211 12234445566888887743322 4569999998 443
Q ss_pred EEEc
Q 002047 375 WCDT 378 (975)
Q Consensus 375 W~~v 378 (975)
-..+
T Consensus 362 ~~~~ 365 (414)
T PF02897_consen 362 SREI 365 (414)
T ss_dssp EEEE
T ss_pred Eeee
Confidence 3333
No 257
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=33.05 E-value=6.8e+02 Score=27.84 Aligned_cols=138 Identities=12% Similarity=0.159 Sum_probs=69.8
Q ss_pred CEEEEEecc-CCC--CCcc-ccEEEEEcCCC---CCcEEEEEecCCCCCCCcccEEEEeCCcEEEEEcCCCCCCCCCcEE
Q 002047 185 TMVVIQGGI-GPA--GLSA-EDLHVLDLTQQ---RPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVW 257 (975)
Q Consensus 185 ~~iyv~GG~-~~~--~~~~-~dv~~yD~~t~---~~~W~~v~~~g~~P~~R~~h~~~~~~~~~lyV~GG~~g~~~~ndv~ 257 (975)
..++++|.. ... .... .-+++|++... ..+++.+... ..+.+ -++++.+++ +|++.-| +.+.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~--V~ai~~~~~-~lv~~~g-------~~l~ 110 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST-EVKGP--VTAICSFNG-RLVVAVG-------NKLY 110 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE-EESS---EEEEEEETT-EEEEEET-------TEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE-eecCc--ceEhhhhCC-EEEEeec-------CEEE
Confidence 356666643 211 1122 66899998873 1235554422 22222 456667777 5666555 5788
Q ss_pred EEECCCCCcE-EEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCccceEEeecCCCCeEEEEECCCCCCCCcce
Q 002047 258 ALDTAAKPYE-WRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQ 336 (975)
Q Consensus 258 ~yDl~s~~~~-W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~d~~~~~~~~~~~W~w~~~~g~~P~~R~~ 336 (975)
.|++... + |......... .........++.|++.--.. .-.++.|+.. +.+.. .+... +.++.-
T Consensus 111 v~~l~~~--~~l~~~~~~~~~----~~i~sl~~~~~~I~vgD~~~-----sv~~~~~~~~-~~~l~--~va~d-~~~~~v 175 (321)
T PF03178_consen 111 VYDLDNS--KTLLKKAFYDSP----FYITSLSVFKNYILVGDAMK-----SVSLLRYDEE-NNKLI--LVARD-YQPRWV 175 (321)
T ss_dssp EEEEETT--SSEEEEEEE-BS----SSEEEEEEETTEEEEEESSS-----SEEEEEEETT-TE-EE--EEEEE-SS-BEE
T ss_pred EEEccCc--ccchhhheecce----EEEEEEeccccEEEEEEccc-----CEEEEEEEcc-CCEEE--EEEec-CCCccE
Confidence 8888887 5 7777655442 35555666677666542211 1223344432 21222 22222 356766
Q ss_pred eeEEEe-CCEEEE
Q 002047 337 HAAVFV-NARLHV 348 (975)
Q Consensus 337 hs~v~~-~~~L~V 348 (975)
.++.++ ++..++
T Consensus 176 ~~~~~l~d~~~~i 188 (321)
T PF03178_consen 176 TAAEFLVDEDTII 188 (321)
T ss_dssp EEEEEE-SSSEEE
T ss_pred EEEEEecCCcEEE
Confidence 777777 554333
No 258
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=32.64 E-value=8.3e+02 Score=28.19 Aligned_cols=170 Identities=13% Similarity=0.102 Sum_probs=80.4
Q ss_pred CCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEeCCcEEEEEcCCCCCC------CCCcEE
Q 002047 184 GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKR------PLADVW 257 (975)
Q Consensus 184 ~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~~~~~lyV~GG~~g~~------~~ndv~ 257 (975)
+++.++++=. .+|.-...++++|+.+.. ...- .++.++... ++...++..+++...+... .-..||
T Consensus 134 dg~~la~~~s-~~G~e~~~l~v~Dl~tg~--~l~d----~i~~~~~~~-~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 134 DGKRLAYSLS-DGGSEWYTLRVFDLETGK--FLPD----GIENPKFSS-VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp TSSEEEEEEE-ETTSSEEEEEEEETTTTE--EEEE----EEEEEESEE-EEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred CCCEEEEEec-CCCCceEEEEEEECCCCc--CcCC----cccccccce-EEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 3455555432 222334579999999863 2211 112222222 5555553444444443322 267899
Q ss_pred EEECCCCCcEEE--EccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCccceEEeecCCC----CeEEEEECCCCCC
Q 002047 258 ALDTAAKPYEWR--KLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRD----GRWEWAIAPGVSP 331 (975)
Q Consensus 258 ~yDl~s~~~~W~--~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~d~~~~~~~~~----~~W~w~~~~g~~P 331 (975)
++.+.+. .-. .+--.... +-....+....+++.+++.-..... .+++|.++.... ..|..+...
T Consensus 206 ~~~~gt~--~~~d~lvfe~~~~--~~~~~~~~~s~d~~~l~i~~~~~~~--~s~v~~~d~~~~~~~~~~~~~l~~~---- 275 (414)
T PF02897_consen 206 RHKLGTP--QSEDELVFEEPDE--PFWFVSVSRSKDGRYLFISSSSGTS--ESEVYLLDLDDGGSPDAKPKLLSPR---- 275 (414)
T ss_dssp EEETTS---GGG-EEEEC-TTC--TTSEEEEEE-TTSSEEEEEEESSSS--EEEEEEEECCCTTTSS-SEEEEEES----
T ss_pred EEECCCC--hHhCeeEEeecCC--CcEEEEEEecCcccEEEEEEEcccc--CCeEEEEeccccCCCcCCcEEEeCC----
Confidence 9988776 222 22111111 1113334444455544433222211 367777766542 345443321
Q ss_pred CCcceeeEEEeCCEEEEEcCcCCCCCccccCCcEEEEECCCCe---EEE
Q 002047 332 SPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGV---WCD 377 (975)
Q Consensus 332 ~~R~~hs~v~~~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~---W~~ 377 (975)
..-..+.+...++.+||.-..+.. ...|..+++.+.. |..
T Consensus 276 ~~~~~~~v~~~~~~~yi~Tn~~a~------~~~l~~~~l~~~~~~~~~~ 318 (414)
T PF02897_consen 276 EDGVEYYVDHHGDRLYILTNDDAP------NGRLVAVDLADPSPAEWWT 318 (414)
T ss_dssp SSS-EEEEEEETTEEEEEE-TT-T------T-EEEEEETTSTSGGGEEE
T ss_pred CCceEEEEEccCCEEEEeeCCCCC------CcEEEEeccccccccccee
Confidence 222233444558899988653322 4568899998875 664
No 259
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=32.13 E-value=8.8e+02 Score=28.34 Aligned_cols=94 Identities=14% Similarity=0.239 Sum_probs=47.3
Q ss_pred CCcEEEecCCC-CCCCC-ccceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEe
Q 002047 159 TNKWSRITPFG-EPPTP-RAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALV 236 (975)
Q Consensus 159 t~~W~~l~~~g-~~P~p-R~~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~ 236 (975)
-.+|.+..... ..+.. ....++...++..|++|-.+ .+|-....-..|+.+.....+|.. .+....+
T Consensus 119 G~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~G---------~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~ 187 (398)
T PLN00033 119 GKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKPA---------ILLHTSDGGETWERIPLSPKLPGE--PVLIKAT 187 (398)
T ss_pred CCCceECccCcccccccccceeeeEEECCEEEEEcCce---------EEEEEcCCCCCceECccccCCCCC--ceEEEEE
Confidence 45788754211 01111 12345555667888876431 233333322359988633223333 3344445
Q ss_pred CCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEc
Q 002047 237 GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKL 271 (975)
Q Consensus 237 ~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v 271 (975)
+++.++++|.. ..+++-+-.-. +|+.+
T Consensus 188 ~~~~~~ivg~~------G~v~~S~D~G~--tW~~~ 214 (398)
T PLN00033 188 GPKSAEMVTDE------GAIYVTSNAGR--NWKAA 214 (398)
T ss_pred CCCceEEEecc------ceEEEECCCCC--CceEc
Confidence 55467777732 23555554445 89886
No 260
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=31.28 E-value=7.2e+02 Score=27.08 Aligned_cols=83 Identities=17% Similarity=0.185 Sum_probs=45.4
Q ss_pred cEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccC--CCCCCC
Q 002047 202 DLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEP--EGEGPP 279 (975)
Q Consensus 202 dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~--~~~~P~ 279 (975)
.+-.+|..+.. .+... .||..-...+ ..-+..+||.||.+. -+++||..+. ..+.. .+..
T Consensus 206 sV~Fwdaksf~----~lKs~-k~P~nV~SAS--L~P~k~~fVaGged~-----~~~kfDy~Tg----eEi~~~nkgh~-- 267 (334)
T KOG0278|consen 206 SVKFWDAKSFG----LLKSY-KMPCNVESAS--LHPKKEFFVAGGEDF-----KVYKFDYNTG----EEIGSYNKGHF-- 267 (334)
T ss_pred eeEEecccccc----ceeec-cCcccccccc--ccCCCceEEecCcce-----EEEEEeccCC----ceeeecccCCC--
Confidence 45566766632 22211 4454333222 233347999999765 4677888776 22222 1211
Q ss_pred CcceeEEEEEeCCeEEEecCCCCC
Q 002047 280 PCMYATASARSDGLLLLCGGRDAS 303 (975)
Q Consensus 280 ~r~~~~a~~~~~g~lyvfGG~~~~ 303 (975)
.--|+.-...+|.+|..|..++.
T Consensus 268 -gpVhcVrFSPdGE~yAsGSEDGT 290 (334)
T KOG0278|consen 268 -GPVHCVRFSPDGELYASGSEDGT 290 (334)
T ss_pred -CceEEEEECCCCceeeccCCCce
Confidence 12233444568999999987764
No 261
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=30.83 E-value=6.3e+02 Score=26.31 Aligned_cols=68 Identities=12% Similarity=0.120 Sum_probs=41.9
Q ss_pred ccCcEEEEECCCCcEEEecCCCC--CCCCccceEEEEeCC-EEEEEeccCCCCCccccEEEEEcCCCCCcEEEEE
Q 002047 148 ATADVHCYDVLTNKWSRITPFGE--PPTPRAAHVATAVGT-MVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVV 219 (975)
Q Consensus 148 ~~~dv~~yD~~t~~W~~l~~~g~--~P~pR~~hsa~~~~~-~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~ 219 (975)
-..++|++|..++.|..+..... --.|. ....+.+. -++++|-..+.-..-..+|+|++.+.. -+.+.
T Consensus 86 giGkIYIkn~~~~~~~~L~i~~~~~k~sPK--~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~--~~~ly 156 (200)
T PF15525_consen 86 GIGKIYIKNLNNNNWWSLQIDQNEEKYSPK--YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGN--LTELY 156 (200)
T ss_pred cceeEEEEecCCCceEEEEecCcccccCCc--eeEEecCCcEEEEEccccceEccCCeEEEEEccCCc--eeEee
Confidence 56799999999999987743321 23444 34455555 455565322222234689999999874 55554
No 262
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=30.38 E-value=96 Score=37.91 Aligned_cols=37 Identities=24% Similarity=0.102 Sum_probs=23.6
Q ss_pred eEEEeccccCCCCCh-----HHHHHHHHHhhhcCCCCEEEEeccccc
Q 002047 733 DYLFLGDYVDRGQHS-----LETITLLLALKVEYPNNVHLIRGNHEA 774 (975)
Q Consensus 733 ~~vfLGDyVDRG~~s-----~evl~ll~~lk~~~P~~v~llrGNHE~ 774 (975)
-+|..||.+..-+.+ ...+.+|-++ .--.+..||||.
T Consensus 52 l~ldaGD~~~gs~~~~~~~g~~~i~~~N~~-----g~Da~~lGNHEF 93 (550)
T TIGR01530 52 LVLHAGDAIIGTLYFTLFGGRADAALMNAA-----GFDFFTLGNHEF 93 (550)
T ss_pred EEEECCCCCCCccchhhcCCHHHHHHHhcc-----CCCEEEeccccc
Confidence 466799998754422 3345555555 344677899996
No 263
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=29.49 E-value=8.6e+02 Score=27.40 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=20.3
Q ss_pred ceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCC
Q 002047 177 AHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQ 211 (975)
Q Consensus 177 ~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~ 211 (975)
.-+++++.+..++-||. .+.+++||+.++
T Consensus 45 sitavAVs~~~~aSGss------DetI~IYDm~k~ 73 (362)
T KOG0294|consen 45 SITALAVSGPYVASGSS------DETIHIYDMRKR 73 (362)
T ss_pred ceeEEEecceeEeccCC------CCcEEEEeccch
Confidence 34556666666666664 568999999876
No 264
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=29.12 E-value=7.6e+02 Score=28.41 Aligned_cols=141 Identities=15% Similarity=0.106 Sum_probs=65.8
Q ss_pred cccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEe--CCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCC
Q 002047 200 AEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALV--GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEG 277 (975)
Q Consensus 200 ~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~--~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~ 277 (975)
.+.+.++|..+.. .-.+++.. -.-|....+ +++++||.+. + ..+.++|+.+. +=..--..+.
T Consensus 15 ~~~v~viD~~t~~-~~~~i~~~------~~~h~~~~~s~Dgr~~yv~~r-d-----g~vsviD~~~~--~~v~~i~~G~- 78 (369)
T PF02239_consen 15 SGSVAVIDGATNK-VVARIPTG------GAPHAGLKFSPDGRYLYVANR-D-----GTVSVIDLATG--KVVATIKVGG- 78 (369)
T ss_dssp GTEEEEEETTT-S-EEEEEE-S------TTEEEEEE-TT-SSEEEEEET-T-----SEEEEEETTSS--SEEEEEE-SS-
T ss_pred CCEEEEEECCCCe-EEEEEcCC------CCceeEEEecCCCCEEEEEcC-C-----CeEEEEECCcc--cEEEEEecCC-
Confidence 4689999998864 24444421 122555444 3568999863 3 36899999988 3221111222
Q ss_pred CCCcceeEEEEEeCCeEEEecCCCCCCCCccceEEeecCCCCeEEEEECCCCC---CCCcceeeEEEeCCEEEEEcCcCC
Q 002047 278 PPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVS---PSPRYQHAAVFVNARLHVSGGALG 354 (975)
Q Consensus 278 P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~d~~~~~~~~~~~W~w~~~~g~~---P~~R~~hs~v~~~~~L~V~GG~~~ 354 (975)
.....+...+|+.++.+.+.. +.+..++..+...-..+...+.. +.+|...-........||+--
T Consensus 79 ----~~~~i~~s~DG~~~~v~n~~~-----~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l--- 146 (369)
T PF02239_consen 79 ----NPRGIAVSPDGKYVYVANYEP-----GTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL--- 146 (369)
T ss_dssp ----EEEEEEE--TTTEEEEEEEET-----TEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE---
T ss_pred ----CcceEEEcCCCCEEEEEecCC-----CceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEE---
Confidence 223333344665555544322 23444554443223333333221 234432222333555566532
Q ss_pred CCCccccCCcEEEEECCCC
Q 002047 355 GGRMVEDSSSVAVLDTAAG 373 (975)
Q Consensus 355 ~~~~~~~~~dv~~yD~~t~ 373 (975)
.+...+|+.|....
T Consensus 147 -----kd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 147 -----KDTGEIWVVDYSDP 160 (369)
T ss_dssp -----TTTTEEEEEETTTS
T ss_pred -----ccCCeEEEEEeccc
Confidence 23567999997664
No 265
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=29.09 E-value=7.9e+02 Score=27.32 Aligned_cols=101 Identities=12% Similarity=0.179 Sum_probs=59.4
Q ss_pred CcEEEEECCCC-----cEEEecCCCCCCCCccceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCC
Q 002047 150 ADVHCYDVLTN-----KWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPG 224 (975)
Q Consensus 150 ~dv~~yD~~t~-----~W~~l~~~g~~P~pR~~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~ 224 (975)
..++.|++... +++.+... ..+-.-++++.+++++++.-| +.+++|++.... ++.... ..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~---~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~l~~~~-~l~~~~---~~ 126 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHST---EVKGPVTAICSFNGRLVVAVG--------NKLYVYDLDNSK-TLLKKA---FY 126 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEE---EESS-EEEEEEETTEEEEEET--------TEEEEEEEETTS-SEEEEE---EE
T ss_pred cEEEEEEEEcccccceEEEEEEEE---eecCcceEhhhhCCEEEEeec--------CEEEEEEccCcc-cchhhh---ee
Confidence 57889998884 56655433 223335677778888777766 478888888763 477666 33
Q ss_pred CCCCcccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEcc
Q 002047 225 PGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLE 272 (975)
Q Consensus 225 P~~R~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~ 272 (975)
..+-+..++.++++ +|+|.--..+ -.++.|+.... +-..++
T Consensus 127 ~~~~~i~sl~~~~~-~I~vgD~~~s----v~~~~~~~~~~--~l~~va 167 (321)
T PF03178_consen 127 DSPFYITSLSVFKN-YILVGDAMKS----VSLLRYDEENN--KLILVA 167 (321)
T ss_dssp -BSSSEEEEEEETT-EEEEEESSSS----EEEEEEETTTE---EEEEE
T ss_pred cceEEEEEEecccc-EEEEEEcccC----EEEEEEEccCC--EEEEEE
Confidence 33446666667776 5665322221 23445676544 344444
No 266
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=28.03 E-value=75 Score=34.70 Aligned_cols=63 Identities=27% Similarity=0.290 Sum_probs=40.0
Q ss_pred CCEEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHH---HHHhhhcCCCCEEEEeccccc
Q 002047 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITL---LLALKVEYPNNVHLIRGNHEA 774 (975)
Q Consensus 698 ~~i~vvGDiHG~~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~l---l~~lk~~~P~~v~llrGNHE~ 774 (975)
.+++.|+|.|....+.. ..|+.+ -++-+||+-.-|.. -||+.+ |-+|.- .+=+.|+||||.
T Consensus 62 ~r~VcisdtH~~~~~i~------~~p~gD------vlihagdfT~~g~~-~ev~~fn~~~gslph---~yKIVIaGNHEL 125 (305)
T KOG3947|consen 62 ARFVCISDTHELTFDIN------DIPDGD------VLIHAGDFTNLGLP-EEVIKFNEWLGSLPH---EYKIVIAGNHEL 125 (305)
T ss_pred eEEEEecCcccccCccc------cCCCCc------eEEeccCCccccCH-HHHHhhhHHhccCcc---eeeEEEeeccce
Confidence 46899999998776654 233332 45779999876643 344433 333322 245789999998
Q ss_pred cc
Q 002047 775 AD 776 (975)
Q Consensus 775 ~~ 776 (975)
-.
T Consensus 126 tF 127 (305)
T KOG3947|consen 126 TF 127 (305)
T ss_pred ee
Confidence 53
No 267
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=27.66 E-value=8.2e+02 Score=26.59 Aligned_cols=137 Identities=15% Similarity=0.100 Sum_probs=70.7
Q ss_pred ccCcEEEEECCCCcEE---EecCCCC---CCCCcc---ceEEEEeCCEEEEEeccCCCCCccccEEEEEcCCCC--CcEE
Q 002047 148 ATADVHCYDVLTNKWS---RITPFGE---PPTPRA---AHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQR--PRWH 216 (975)
Q Consensus 148 ~~~dv~~yD~~t~~W~---~l~~~g~---~P~pR~---~hsa~~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~--~~W~ 216 (975)
.++.+.+||+.++.-. .|+..+- .|.-.. ..-.++.++-|+|+-....... .=-+-.+|+.+.. ..|.
T Consensus 87 ~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g-~ivvskld~~tL~v~~tw~ 165 (250)
T PF02191_consen 87 NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG-NIVVSKLDPETLSVEQTWN 165 (250)
T ss_pred CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC-cEEEEeeCcccCceEEEEE
Confidence 4679999999988644 4543321 111111 1334455566666654432211 0123345555432 1254
Q ss_pred EEEecCCCCCCCcccEEEEeCCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEEccCCCCCCCCcceeEEEEE--eCCeE
Q 002047 217 RVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASAR--SDGLL 294 (975)
Q Consensus 217 ~v~~~g~~P~~R~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~--~~g~l 294 (975)
. ..+.+..+.+..+++ .||++-..+... ..-.+.||+.++ +=..+...- +.+....+++.+ .+.+|
T Consensus 166 T-----~~~k~~~~naFmvCG--vLY~~~s~~~~~-~~I~yafDt~t~--~~~~~~i~f--~~~~~~~~~l~YNP~dk~L 233 (250)
T PF02191_consen 166 T-----SYPKRSAGNAFMVCG--VLYATDSYDTRD-TEIFYAFDTYTG--KEEDVSIPF--PNPYGNISMLSYNPRDKKL 233 (250)
T ss_pred e-----ccCchhhcceeeEee--EEEEEEECCCCC-cEEEEEEECCCC--ceeceeeee--ccccCceEeeeECCCCCeE
Confidence 3 346666677665554 799997765433 445688999988 333332211 111223333332 35678
Q ss_pred EEe
Q 002047 295 LLC 297 (975)
Q Consensus 295 yvf 297 (975)
|++
T Consensus 234 Y~w 236 (250)
T PF02191_consen 234 YAW 236 (250)
T ss_pred EEE
Confidence 876
No 268
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=27.57 E-value=1.1e+03 Score=28.03 Aligned_cols=184 Identities=13% Similarity=0.180 Sum_probs=0.0
Q ss_pred EeCCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEeCCcEEEEEcCCCCCCCCCcEEEEEC
Q 002047 182 AVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDT 261 (975)
Q Consensus 182 ~~~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~~~~~lyV~GG~~g~~~~ndv~~yDl 261 (975)
..++.|++. +.+|+|.|++.+.. .-+...-.|-...+|+......+. .--|.=|...+. .|++.++.
T Consensus 48 I~GD~IiFt--------~~DdlWe~slk~g~-~~ritS~lGVvnn~kf~pdGrkva--f~rv~~~ss~~t--aDly~v~~ 114 (668)
T COG4946 48 IYGDRIIFT--------CCDDLWEYSLKDGK-PLRITSGLGVVNNPKFSPDGRKVA--FSRVMLGSSLQT--ADLYVVPS 114 (668)
T ss_pred ccCcEEEEE--------echHHHHhhhccCC-eeEEecccceeccccCCCCCcEEE--EEEEEecCCCcc--ccEEEEeC
Q ss_pred CCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCccceEEeecCCCCeEEEEECCCCCCCCcceeeEEE
Q 002047 262 AAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVF 341 (975)
Q Consensus 262 ~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v~ 341 (975)
+.. +-.++.-.+. +....|....+|.|+|.--.-..-.....+|......- ..-|....-.+..+
T Consensus 115 e~G--e~kRiTyfGr----~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~---------~~e~LnlGpathiv 179 (668)
T COG4946 115 EDG--EAKRITYFGR----RFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGI---------KTEPLNLGPATHIV 179 (668)
T ss_pred CCC--cEEEEEEecc----ccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCc---------eeeeccCCceeeEE
Q ss_pred eCCEEEEEc----------CcCCCCCccccCCcEEEEECCCCeEEEcccCcCCCCCCCCccccCCCCCccCCCccceeEE
Q 002047 342 VNARLHVSG----------GALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAA 411 (975)
Q Consensus 342 ~~~~L~V~G----------G~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa 411 (975)
+.+-+.|+| |+.++. ...+|+=--...++.++-.+ .-.-.+-
T Consensus 180 ~~dg~ivigRntydLP~WK~YkGGt-----rGklWis~d~g~tFeK~vdl-----------------------~~~vS~P 231 (668)
T COG4946 180 IKDGIIVIGRNTYDLPHWKGYKGGT-----RGKLWISSDGGKTFEKFVDL-----------------------DGNVSSP 231 (668)
T ss_pred EeCCEEEEccCcccCcccccccCCc-----cceEEEEecCCcceeeeeec-----------------------CCCcCCc
Q ss_pred EEECCEEEEE
Q 002047 412 AAVGDLIFIY 421 (975)
Q Consensus 412 ~~~~~~LyV~ 421 (975)
..++++||.+
T Consensus 232 mIV~~RvYFl 241 (668)
T COG4946 232 MIVGERVYFL 241 (668)
T ss_pred eEEcceEEEE
No 269
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=26.58 E-value=3.9e+02 Score=27.40 Aligned_cols=84 Identities=19% Similarity=0.209 Sum_probs=60.2
Q ss_pred ccccCHHHHHHHHHHHHHHHhcCCCeeeecCCEEEEecCCCCHHHHHHHHHHhCCCCC----------------------
Q 002047 668 QFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPST---------------------- 725 (975)
Q Consensus 668 ~~~l~~~~i~~l~~~~~~~~~~ep~~l~l~~~i~vvGDiHG~~~~L~~ll~~~g~~~~---------------------- 725 (975)
...+++++|.+-|.+..+.+.++-.= ...++||=++|++-=+-.++..+.++.+
T Consensus 9 evLisee~I~~ri~ela~~I~~~y~g----~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vSSYg~~t~ssg~v~i~ 84 (178)
T COG0634 9 EVLISEEQIKARIKELAAQITEDYGG----KDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEVKIL 84 (178)
T ss_pred eEeeCHHHHHHHHHHHHHHHHHhhCC----CceEEEEEcccchhhHHHHHHhcCCCceeEEEEEeccCCCcccCCceEEe
Confidence 45789999999999888877765432 5678999999999777777776665432
Q ss_pred ---CCCccceeEEEeccccCCCCChHHHHHHHH
Q 002047 726 ---AGDIAYIDYLFLGDYVDRGQHSLETITLLL 755 (975)
Q Consensus 726 ---~~~~~~~~~vfLGDyVDRG~~s~evl~ll~ 755 (975)
+.++..-++|++=|++|-|.-=-.+..+|.
T Consensus 85 kDld~di~grdVLiVeDIiDsG~TLs~i~~~l~ 117 (178)
T COG0634 85 KDLDEDIKGRDVLIVEDIIDSGLTLSKVRDLLK 117 (178)
T ss_pred cccccCCCCCeEEEEecccccChhHHHHHHHHH
Confidence 112223378999999998875555555554
No 270
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=24.45 E-value=82 Score=36.56 Aligned_cols=24 Identities=8% Similarity=0.218 Sum_probs=20.1
Q ss_pred HHHHHHHHcCCeEEEEeccccccc
Q 002047 886 RVMEFCNNNDLQLIVRAHECVMDG 909 (975)
Q Consensus 886 ~~~~fl~~~~l~~iiR~H~~~~~G 909 (975)
.+.-+|+++++++.|-||+-..+-
T Consensus 239 ~L~PLL~ky~VdlYisGHDH~lq~ 262 (394)
T PTZ00422 239 YLLPLLKDAQVDLYISGYDRNMEV 262 (394)
T ss_pred HHHHHHHHcCcCEEEEccccceEE
Confidence 677799999999999999976443
No 271
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=24.41 E-value=1e+03 Score=26.64 Aligned_cols=179 Identities=15% Similarity=0.248 Sum_probs=74.0
Q ss_pred CCCcEEEecCCCCCCCCccceEEEEeC-CEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEe
Q 002047 158 LTNKWSRITPFGEPPTPRAAHVATAVG-TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALV 236 (975)
Q Consensus 158 ~t~~W~~l~~~g~~P~pR~~hsa~~~~-~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~ 236 (975)
.-.+|+++.... +.|-..+....++ +.++++|.. ..+| -....-..|+.+... . .-.-..+...
T Consensus 89 gG~tW~~v~l~~--~lpgs~~~i~~l~~~~~~l~~~~-------G~iy--~T~DgG~tW~~~~~~---~-~gs~~~~~r~ 153 (302)
T PF14870_consen 89 GGKTWERVPLSS--KLPGSPFGITALGDGSAELAGDR-------GAIY--RTTDGGKTWQAVVSE---T-SGSINDITRS 153 (302)
T ss_dssp TTSS-EE----T--T-SS-EEEEEEEETTEEEEEETT---------EE--EESSTTSSEEEEE-S--------EEEEEE-
T ss_pred CCCCcEEeecCC--CCCCCeeEEEEcCCCcEEEEcCC-------CcEE--EeCCCCCCeeEcccC---C-cceeEeEEEC
Confidence 456899986431 3444455555554 477777643 2333 333322259987621 1 1112223334
Q ss_pred CCcEEEEEcCCCCCCCCCcEE-EEECCCCCcEEEEccCCCCCCCCcceeEEEEEeCCeEEEecCCCCCCCCccceEEeec
Q 002047 237 GQRYLMAIGGNDGKRPLADVW-ALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAK 315 (975)
Q Consensus 237 ~~~~lyV~GG~~g~~~~ndv~-~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~g~lyvfGG~~~~~~~l~d~~~~~~ 315 (975)
.++.+++++ ..| .++ ..|+-.. .|+....... |+...+....++.|++.. +.+. ..+..
T Consensus 154 ~dG~~vavs-~~G-----~~~~s~~~G~~--~w~~~~r~~~----~riq~~gf~~~~~lw~~~-~Gg~-------~~~s~ 213 (302)
T PF14870_consen 154 SDGRYVAVS-SRG-----NFYSSWDPGQT--TWQPHNRNSS----RRIQSMGFSPDGNLWMLA-RGGQ-------IQFSD 213 (302)
T ss_dssp TTS-EEEEE-TTS-----SEEEEE-TT-S--S-EEEE--SS----S-EEEEEE-TTS-EEEEE-TTTE-------EEEEE
T ss_pred CCCcEEEEE-Ccc-----cEEEEecCCCc--cceEEccCcc----ceehhceecCCCCEEEEe-CCcE-------EEEcc
Confidence 554545444 333 233 4577666 7887765433 677777777888888864 3221 12222
Q ss_pred CCCCeEEEEECCCCCCCCcceee-EEEe-CCEEEEEcCcCCCCCccccCCcEEEEECCCCeEEEcccC
Q 002047 316 HRDGRWEWAIAPGVSPSPRYQHA-AVFV-NARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSV 381 (975)
Q Consensus 316 ~~~~~W~w~~~~g~~P~~R~~hs-~v~~-~~~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 381 (975)
..+..=+|.+.........++.- ++.. ++.+|+.||. ..+++=.-.-++|.+....
T Consensus 214 ~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~----------G~l~~S~DgGktW~~~~~~ 271 (302)
T PF14870_consen 214 DPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS----------GTLLVSTDGGKTWQKDRVG 271 (302)
T ss_dssp -TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST----------T-EEEESSTTSS-EE-GGG
T ss_pred CCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC----------ccEEEeCCCCccceECccc
Confidence 11111144443221112233322 3333 4789999884 2255444466799998764
No 272
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=24.36 E-value=1.1e+03 Score=27.01 Aligned_cols=72 Identities=8% Similarity=-0.054 Sum_probs=43.4
Q ss_pred CEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCCCcccEEEEeCCcEEEEEcCCC----CCCCCCcEEEEE
Q 002047 185 TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGND----GKRPLADVWALD 260 (975)
Q Consensus 185 ~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~R~~h~~~~~~~~~lyV~GG~~----g~~~~ndv~~yD 260 (975)
.++||.-..... ..+.++++|..+. +.+. ..+.++..|.+..-+++.|||.-.+- -....+.|.+||
T Consensus 13 ~~v~V~d~~~~~--~~~~v~ViD~~~~----~v~g---~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D 83 (352)
T TIGR02658 13 RRVYVLDPGHFA--ATTQVYTIDGEAG----RVLG---MTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVID 83 (352)
T ss_pred CEEEEECCcccc--cCceEEEEECCCC----EEEE---EEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence 356776443111 1278999999884 3332 33444444444445566899987631 123457899999
Q ss_pred CCCCC
Q 002047 261 TAAKP 265 (975)
Q Consensus 261 l~s~~ 265 (975)
+.+..
T Consensus 84 ~~t~~ 88 (352)
T TIGR02658 84 PQTHL 88 (352)
T ss_pred CccCc
Confidence 99884
No 273
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=22.05 E-value=59 Score=39.71 Aligned_cols=72 Identities=24% Similarity=0.158 Sum_probs=36.4
Q ss_pred cCCEEEEecCCCCHHH----------HHHHHHHhCCCCCCCCccceeEEEeccccCCCCCh-----HHHHHHHHHhhhcC
Q 002047 697 KAPIKIFGDLHGQFGD----------LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS-----LETITLLLALKVEY 761 (975)
Q Consensus 697 ~~~i~vvGDiHG~~~~----------L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s-----~evl~ll~~lk~~~ 761 (975)
+-.|+-+.|+||++.. +..+++...-.... .....-+|.-||++.--+.+ .-++.+|-++.
T Consensus 34 ~ltil~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~-~~~~~l~ldaGD~~~Gs~~s~~~~g~~~i~~mN~~g--- 109 (551)
T PRK09558 34 KITILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAA-EGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLIG--- 109 (551)
T ss_pred EEEEEEecccCCCccccccCCccHHHHHHHHHHHHHHhhc-cCCCEEEEcCCccccceEhhhhcCCchhHHHHhcCC---
Confidence 3457889999999752 23334333210000 00112456689998633221 22344444442
Q ss_pred CCCEEEEeccccc
Q 002047 762 PNNVHLIRGNHEA 774 (975)
Q Consensus 762 P~~v~llrGNHE~ 774 (975)
-.+.. .||||.
T Consensus 110 -~Da~t-lGNHEF 120 (551)
T PRK09558 110 -YDAMA-VGNHEF 120 (551)
T ss_pred -CCEEc-cccccc
Confidence 23444 499997
No 274
>PF09637 Med18: Med18 protein; InterPro: IPR019095 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med18 is one subunit of the Mediator complex and a component of the head module that is involved in stimulating basal RNA polymerase II (PolII) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Med8 and Med20 proteins by forming a heterodimer of two-fold symmetry with Med20 and binding the C-terminal alpha-helix region of Med8 across the top of its barrel. This complex creates a multipartite TBP-binding site that can be modulated by transcriptional activators []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2HZM_F 2HZS_H 3RJ1_E 3C0T_A.
Probab=21.58 E-value=1e+02 Score=33.59 Aligned_cols=39 Identities=23% Similarity=0.409 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEecc
Q 002047 883 GPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSA 924 (975)
Q Consensus 883 g~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa 924 (975)
...-+..||+.+|..+. +|.+.+||.|++++-+|+||--
T Consensus 139 ~~~~~~~fl~~lGy~~~---~Eyv~~G~~F~~g~i~I~l~ri 177 (250)
T PF09637_consen 139 TSGSLLSFLNELGYRFD---YEYVVEGYRFFKGDIVIELFRI 177 (250)
T ss_dssp SSSSHHHHHHHTTEEEE---EEEEEEEEEEEECCEEEEEEEE
T ss_pred CCCCHHHHHHHcCCceE---EEEEEEEEEEEECCEEEEEEEE
Confidence 45568899999997664 8999999999999988888743
No 275
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=21.37 E-value=1e+02 Score=33.91 Aligned_cols=39 Identities=26% Similarity=0.484 Sum_probs=26.9
Q ss_pred eEEEeccccCCCCChHHHH-HHHHHhhhcCCCCEEEEecccccc
Q 002047 733 DYLFLGDYVDRGQHSLETI-TLLLALKVEYPNNVHLIRGNHEAA 775 (975)
Q Consensus 733 ~~vfLGDyVDRG~~s~evl-~ll~~lk~~~P~~v~llrGNHE~~ 775 (975)
+++|+||+|. .-..+.| .+|-.||.+++..+.+ .|=|..
T Consensus 2 ~ilfiGDi~G--~~Gr~~l~~~L~~lk~~~~~D~vI--aNgEn~ 41 (266)
T TIGR00282 2 KFLFIGDVYG--KAGRKIVKNNLPQLKSKYQADLVI--ANGENT 41 (266)
T ss_pred eEEEEEecCC--HHHHHHHHHHHHHHHHhCCCCEEE--EcCccc
Confidence 7999999994 4444444 6777888887655444 466664
No 276
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=21.29 E-value=1.9e+02 Score=25.62 Aligned_cols=72 Identities=14% Similarity=0.098 Sum_probs=46.0
Q ss_pred cCCEEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEEeccc
Q 002047 697 KAPIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNH 772 (975)
Q Consensus 697 ~~~i~vvGDiHG~~~~L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNH 772 (975)
...+.||=|---+...+..+++.+......+ ..++.+|+.-|+|....+....+-.+...+.+.+++.-.|+
T Consensus 11 ~~~~~vi~D~ahNp~s~~a~l~~l~~~~~~~----~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d~vi~~~~~~ 82 (91)
T PF02875_consen 11 PNGPTVIDDYAHNPDSIRALLEALKELYPKG----RIIAVFGAMGDLGSKDKDFHEEIGELAAQLADVVILTGDNP 82 (91)
T ss_dssp ETTEEEEEET--SHHHHHHHHHHHHHHCTTS----EEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSSEEEEETSBT
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHHHhccCC----cEEEEEccccccccccHHHHHHHHHHHHhcCCEEEEcCCCC
Confidence 3457778887778888888877663221111 16788999999988888877777776666666655554443
No 277
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=20.30 E-value=1.5e+02 Score=37.79 Aligned_cols=68 Identities=18% Similarity=0.105 Sum_probs=39.0
Q ss_pred cCCEEEEecCCCCHHH----------------HHHHHHHhCCCCCCCCccceeEEEeccccCCCCC--------------
Q 002047 697 KAPIKIFGDLHGQFGD----------------LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQH-------------- 746 (975)
Q Consensus 697 ~~~i~vvGDiHG~~~~----------------L~~ll~~~g~~~~~~~~~~~~~vfLGDyVDRG~~-------------- 746 (975)
.-+|+-..||||++.. +..++++..-.. ...-+|..||++---+.
T Consensus 39 ~L~IL~TnDiHg~l~~~dy~~~~~~~~~Glar~AtlI~~~R~e~-----~ntlllD~GD~iqGspl~~~~~~~~~~~~~~ 113 (780)
T PRK09418 39 NLRILETSDIHVNLMNYDYYQTKTDNKVGLVQTATLVNKAREEA-----KNSVLFDDGDALQGTPLGDYVANKINDPKKP 113 (780)
T ss_pred EEEEEEEeecCCCCcCcCccccCCcCCCCHHHHHHHHHHHHHhC-----CCeEEEECCCCCCCchHHHHHhhcccccccc
Confidence 4568889999999642 233444332111 11245669998853322
Q ss_pred -----hHHHHHHHHHhhhcCCCCEEEEeccccc
Q 002047 747 -----SLETITLLLALKVEYPNNVHLIRGNHEA 774 (975)
Q Consensus 747 -----s~evl~ll~~lk~~~P~~v~llrGNHE~ 774 (975)
..-++.+|-+|. -=....||||.
T Consensus 114 ~~~~~~~p~i~~mN~lg-----yDa~tlGNHEF 141 (780)
T PRK09418 114 VDPSYTHPLYRLMNLMK-----YDVISLGNHEF 141 (780)
T ss_pred cccccchHHHHHHhccC-----CCEEecccccc
Confidence 123556665553 33567899995
No 278
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=20.24 E-value=1.3e+03 Score=26.41 Aligned_cols=185 Identities=19% Similarity=0.205 Sum_probs=86.3
Q ss_pred cCcEEEEECCCCc-EEEecCCCCCCCCccceEEEEe---CCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCC
Q 002047 149 TADVHCYDVLTNK-WSRITPFGEPPTPRAAHVATAV---GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPG 224 (975)
Q Consensus 149 ~~dv~~yD~~t~~-W~~l~~~g~~P~pR~~hsa~~~---~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~ 224 (975)
.+.+..+|..+.+ -.+++.. ..-|..... +.++|+.+. ...+.++|+.+.. .-.++
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~------~~~h~~~~~s~Dgr~~yv~~r-------dg~vsviD~~~~~-~v~~i------ 74 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTG------GAPHAGLKFSPDGRYLYVANR-------DGTVSVIDLATGK-VVATI------ 74 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-S------TTEEEEEE-TT-SSEEEEEET-------TSEEEEEETTSSS-EEEEE------
T ss_pred CCEEEEEECCCCeEEEEEcCC------CCceeEEEecCCCCEEEEEcC-------CCeEEEEECCccc-EEEEE------
Confidence 4578889988876 3444332 122554443 348898853 2368999999864 22233
Q ss_pred CCCCcccEEEEe-CCcEEEEEcCCCCCCCCCcEEEEECCCCCcEEEE-ccC--CCC-CCCCcceeEEEEEeCCeEEEecC
Q 002047 225 PGPRYGHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRK-LEP--EGE-GPPPCMYATASARSDGLLLLCGG 299 (975)
Q Consensus 225 P~~R~~h~~~~~-~~~~lyV~GG~~g~~~~ndv~~yDl~s~~~~W~~-v~~--~~~-~P~~r~~~~a~~~~~g~lyvfGG 299 (975)
+.+...+.+++- +++++|+.. + .-+++..+|.++. +=.+ +.. ... .+.+ +.........+..|++--
T Consensus 75 ~~G~~~~~i~~s~DG~~~~v~n-~----~~~~v~v~D~~tl--e~v~~I~~~~~~~~~~~~-Rv~aIv~s~~~~~fVv~l 146 (369)
T PF02239_consen 75 KVGGNPRGIAVSPDGKYVYVAN-Y----EPGTVSVIDAETL--EPVKTIPTGGMPVDGPES-RVAAIVASPGRPEFVVNL 146 (369)
T ss_dssp E-SSEEEEEEE--TTTEEEEEE-E----ETTEEEEEETTT----EEEEEE--EE-TTTS----EEEEEE-SSSSEEEEEE
T ss_pred ecCCCcceEEEcCCCCEEEEEe-c----CCCceeEeccccc--cceeecccccccccccCC-CceeEEecCCCCEEEEEE
Confidence 334444444443 444555532 1 2358899999876 3222 211 111 1111 222223344555566533
Q ss_pred CCCCCCCccceEEeecCCCCeEEEEECCCCCCCCcceeeEEEeCC-EEEEEcCcCCCCCccccCCcEEEEECCCCeEEEc
Q 002047 300 RDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNA-RLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDT 378 (975)
Q Consensus 300 ~~~~~~~l~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hs~v~~~~-~L~V~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v 378 (975)
.+ ...+|.++........ ... ....++-|-+.+-.+ +.|+. +... .+.+-+.|+++++=...
T Consensus 147 kd-----~~~I~vVdy~d~~~~~-~~~---i~~g~~~~D~~~dpdgry~~v-a~~~-------sn~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 147 KD-----TGEIWVVDYSDPKNLK-VTT---IKVGRFPHDGGFDPDGRYFLV-AANG-------SNKIAVIDTKTGKLVAL 209 (369)
T ss_dssp TT-----TTEEEEEETTTSSCEE-EEE---EE--TTEEEEEE-TTSSEEEE-EEGG-------GTEEEEEETTTTEEEEE
T ss_pred cc-----CCeEEEEEeccccccc-eee---ecccccccccccCcccceeee-cccc-------cceeEEEeeccceEEEE
Confidence 22 2345555432221111 111 123455566555543 44433 3222 45688999998865443
No 279
>PLN00181 protein SPA1-RELATED; Provisional
Probab=20.22 E-value=1.8e+03 Score=28.04 Aligned_cols=92 Identities=11% Similarity=0.097 Sum_probs=46.6
Q ss_pred CcEEEEECCCCcEEEecCCCCCCCCccceEEEEe--CCEEEEEeccCCCCCccccEEEEEcCCCCCcEEEEEecCCCCCC
Q 002047 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAV--GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 227 (975)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~--~~~iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~P~~ 227 (975)
..+..||..+.+....-.. ....-.+++.. ++.+++.||. ...+.+||+.+.. ....+..
T Consensus 555 g~v~lWd~~~~~~~~~~~~----H~~~V~~l~~~p~~~~~L~Sgs~------Dg~v~iWd~~~~~-~~~~~~~------- 616 (793)
T PLN00181 555 GVVQVWDVARSQLVTEMKE----HEKRVWSIDYSSADPTLLASGSD------DGSVKLWSINQGV-SIGTIKT------- 616 (793)
T ss_pred CeEEEEECCCCeEEEEecC----CCCCEEEEEEcCCCCCEEEEEcC------CCEEEEEECCCCc-EEEEEec-------
Confidence 4566778776543221110 11112223332 3467777774 3468899987642 2333321
Q ss_pred CcccEEEEe--CCcEEEEEcCCCCCCCCCcEEEEECCCC
Q 002047 228 RYGHVMALV--GQRYLMAIGGNDGKRPLADVWALDTAAK 264 (975)
Q Consensus 228 R~~h~~~~~--~~~~lyV~GG~~g~~~~ndv~~yDl~s~ 264 (975)
.....++.+ .++.+++.|+.++ .+..||+.+.
T Consensus 617 ~~~v~~v~~~~~~g~~latgs~dg-----~I~iwD~~~~ 650 (793)
T PLN00181 617 KANICCVQFPSESGRSLAFGSADH-----KVYYYDLRNP 650 (793)
T ss_pred CCCeEEEEEeCCCCCEEEEEeCCC-----eEEEEECCCC
Confidence 111122222 2336777777664 6888998764
No 280
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=20.00 E-value=1e+02 Score=28.78 Aligned_cols=68 Identities=16% Similarity=0.215 Sum_probs=50.7
Q ss_pred CCceeeeCHHHHHHHHHHcCCeEEEEeccccccceEEe------cCCeEEEEeccc---cccCCCCCcEEEEEEcCCc
Q 002047 876 GPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERF------AQGHLITLFSAT---NYCGTANNAGAILVLGRDL 944 (975)
Q Consensus 876 g~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~------~~~~~iTvfSa~---~y~~~~~n~ga~l~i~~~~ 944 (975)
.+|.+.+|.+.+.+-+++...+++|.+-++-+++-+-+ ++-.+++.|+.- ..||. .+.+++.+.++.+
T Consensus 14 rAGklv~G~~~v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~~eLg~a~Gk-~~~~~iai~d~g~ 90 (104)
T PRK05583 14 KAGKLLEGYNKCEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSKEELGNAIGR-DEIKILGVKDKNM 90 (104)
T ss_pred HhCCeeecHHHHHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCHHHHHHHhCC-CCeEEEEEeChHH
Confidence 34557899999999999999999999999988776432 344577777652 35664 3477887777754
Done!