BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002048
(975 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z3H|A Chain A, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State
pdb|1Z3H|B Chain B, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State
Length = 968
Score = 411 bits (1057), Expect = e-115, Method: Compositional matrix adjust.
Identities = 291/965 (30%), Positives = 494/965 (51%), Gaps = 52/965 (5%)
Query: 27 RAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPT 86
+ +ER+L ++ + +GL +L ++A + R A A+ FKN ++ +W D N G
Sbjct: 21 KTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWV---DEN-GNH 76
Query: 87 LAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKD 146
L P + E IK IV LM++ +Q Q+ EA+ + + DFP WPTLL +L + L +
Sbjct: 77 LLPANNVE--LIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSN 134
Query: 147 AAQSNNYVSINGILGTANSIFKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALID 206
++ V+ G+L A+SIFK++R F++++L L++K LD F AP L + LKT +D
Sbjct: 135 ----DDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNL-LKT---VD 186
Query: 207 STVSSG-GPVATLKLLFESQRLCCRIFYSLNFQELPEFFEDHMREWMTEFKKYLTTNYPA 265
+++ A+L +LF+ + +++Y N Q++PEFFED+++ M F KYL+ + P
Sbjct: 187 EQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPL 246
Query: 266 LES--TSDGLGLVDGLRAAVCENISLYMKMNEEEFQGYLNDFALAVWTLLGNVSQSSSRD 323
LE ++ ++ +++++ E + LY E+ F +N+F W LL ++S D
Sbjct: 247 LEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYD 306
Query: 324 SLAVTAIKFLTNVS-TSVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIR 382
L ++ FLT V+ + +F E + I + I++PNV LR+ED ELFE + +E+IR
Sbjct: 307 ILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIR 366
Query: 383 RDMEGSDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAI 442
RD+EGSD DTRRR + LK + V ++ + + ++P NWK KD I
Sbjct: 367 RDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYI 426
Query: 443 YLVVSLATK----KAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTM 498
YL +LA AG +S + +L++V FFT I P+L S ++ +L+ A+K+
Sbjct: 427 YLFTALAINGNITNAGVSS-TNNLLNVVDFFTKEIAPDLTSNNIPHI-ILRVDAIKYIYT 484
Query: 499 FRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSR--YNSADITP 556
FR Q+ K + P L FL + VV++YAA IEK+L +++ ++ DI+
Sbjct: 485 FRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISN 544
Query: 557 YLSVLMTSLFNAF----KFPES-EENQYIMKCIMRVLGVAEISNEVAAP-CISGLTSILN 610
+L+ +L PE EN+++M+ I RVL +E S + P ++ I+
Sbjct: 545 STEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVT 604
Query: 611 EVCKNPKSPIFNHYLFESV-AVLVRRACQRDPSLISAFEASILPSLQIILQNDVTEFLPY 669
+ KNP +P F HY FES+ A+L Q P L+ S++P+ + D+ EF+PY
Sbjct: 605 IMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVD----SMMPTFLTVFSEDIQEFIPY 660
Query: 670 AFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKRSSNVPALVRLLQAFLQKVPREIAQE 729
FQ++A ++E + + + LL+P+ W+ N+PA+ RLL++F+ K I +
Sbjct: 661 VFQIIAFVVE-QSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFI-KTDSSIFPD 718
Query: 730 GKLREVLGIFNMLVLSPSTDEQGFYVLNTIVESLEYGVIAQFVPHIWGVLFTRLQNKRTV 789
L VLGIF L+ S + + GF +L I+ ++ + ++ I +L RLQN +T
Sbjct: 719 --LVPVLGIFQRLIASKAYEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTE 776
Query: 790 KFVKSLLIFMSLFLVKHGPENLVNTMNAVQSGIILVILEQIW----IPNLKLITGAIEWK 845
++VK L +F L K G + L++ ++ VQ G + +QIW I L I ++ K
Sbjct: 777 RYVKKLTVFFGLISNKLGSDFLIHFIDEVQDG----LFQQIWGNFIITTLPTIGNLLDRK 832
Query: 846 LTAVASTRLICESPVLLDAAAVRHWGKMLDSIVTLLSXXXXXXXXXXXXMPDITENMGYT 905
+ + ++ M I T S + ++ E +
Sbjct: 833 IALIGVLNMVINGQFFQSKYPTLISSTMNSIIETASSQSIANLKNDYVDLDNLEEISTFG 892
Query: 906 TAFVNLYNAGKKEEDPLKDI---KDPKEFLVASLARISAVSPGRYPQIISENLEPANQSA 962
+ F L + +K DPL +I + ++ +L + +A+S + I L NQ
Sbjct: 893 SHFSKLVSISEKPFDPLPEIDVNNGVRLYVAEALNKYNAISGNTFLNTILPQLTQENQVK 952
Query: 963 LLQLC 967
L QL
Sbjct: 953 LNQLL 957
>pdb|1WA5|C Chain C, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 960
Score = 410 bits (1055), Expect = e-114, Method: Compositional matrix adjust.
Identities = 291/965 (30%), Positives = 494/965 (51%), Gaps = 52/965 (5%)
Query: 27 RAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPT 86
+ +ER+L ++ + +GL +L ++A + R A A+ FKN ++ +W D N G
Sbjct: 21 KTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWV---DEN-GNH 76
Query: 87 LAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKD 146
L P + E IK IV LM++ +Q Q+ EA+ + + DFP WPTLL +L + L +
Sbjct: 77 LLPANNVE--LIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSN 134
Query: 147 AAQSNNYVSINGILGTANSIFKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALID 206
++ V+ G+L A+SIFK++R F++++L L++K LD F AP L + LKT +D
Sbjct: 135 ----DDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNL-LKT---VD 186
Query: 207 STVSSG-GPVATLKLLFESQRLCCRIFYSLNFQELPEFFEDHMREWMTEFKKYLTTNYPA 265
+++ A+L +LF+ + +++Y N Q++PEFFED+++ M F KYL+ + P
Sbjct: 187 EQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPL 246
Query: 266 LES--TSDGLGLVDGLRAAVCENISLYMKMNEEEFQGYLNDFALAVWTLLGNVSQSSSRD 323
LE ++ ++ +++++ E + LY E+ F +N+F W LL ++S D
Sbjct: 247 LEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYD 306
Query: 324 SLAVTAIKFLTNVS-TSVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIR 382
L ++ FLT V+ + +F E + I + I++PNV LR+ED ELFE + +E+IR
Sbjct: 307 ILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIR 366
Query: 383 RDMEGSDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAI 442
RD+EGSD DTRRR + LK + V ++ + + ++P NWK KD I
Sbjct: 367 RDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYI 426
Query: 443 YLVVSLATK----KAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTM 498
YL +LA AG +S + +L++V FFT I P+L S ++ +L+ A+K+
Sbjct: 427 YLFTALAINGNITNAGVSS-TNNLLNVVDFFTKEIAPDLTSNNIPHI-ILRVDAIKYIYT 484
Query: 499 FRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSR--YNSADITP 556
FR Q+ K + P L FL + VV++YAA IEK+L +++ ++ DI+
Sbjct: 485 FRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISN 544
Query: 557 YLSVLMTSLFNAF----KFPES-EENQYIMKCIMRVLGVAEISNEVAAP-CISGLTSILN 610
+L+ +L PE EN+++M+ I RVL +E S + P ++ I+
Sbjct: 545 STEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVT 604
Query: 611 EVCKNPKSPIFNHYLFESV-AVLVRRACQRDPSLISAFEASILPSLQIILQNDVTEFLPY 669
+ KNP +P F HY FES+ A+L Q P L+ S++P+ + D+ EF+PY
Sbjct: 605 IMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVD----SMMPTFLTVFSEDIQEFIPY 660
Query: 670 AFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKRSSNVPALVRLLQAFLQKVPREIAQE 729
FQ++A ++E + + + LL+P+ W+ N+PA+ RLL++F+ K I +
Sbjct: 661 VFQIIAFVVE-QSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFI-KTDSSIFPD 718
Query: 730 GKLREVLGIFNMLVLSPSTDEQGFYVLNTIVESLEYGVIAQFVPHIWGVLFTRLQNKRTV 789
L VLGIF L+ S + + GF +L I+ ++ + ++ I +L RLQN +T
Sbjct: 719 --LVPVLGIFQRLIASKAYEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTE 776
Query: 790 KFVKSLLIFMSLFLVKHGPENLVNTMNAVQSGIILVILEQIW----IPNLKLITGAIEWK 845
++VK L +F L K G + L++ ++ VQ G + +QIW I L I ++ K
Sbjct: 777 RYVKKLTVFFGLISNKLGSDFLIHFIDEVQDG----LFQQIWGNFIITTLPTIGNLLDRK 832
Query: 846 LTAVASTRLICESPVLLDAAAVRHWGKMLDSIVTLLSXXXXXXXXXXXXMPDITENMGYT 905
+ + ++ M I T S + ++ E +
Sbjct: 833 IALIGVLNMVINGQFFQSKYPTLISSTMNSIIETASSQSIANLKNDYVDLDNLEEISTFG 892
Query: 906 TAFVNLYNAGKKEEDPLKDI---KDPKEFLVASLARISAVSPGRYPQIISENLEPANQSA 962
+ F L + +K DPL +I + ++ +L + +A+S + I L NQ
Sbjct: 893 SHFSKLVSISEKPFDPLPEIDVNNGVRLYVAEALNKYNAISGNTFLNTILPQLTQENQVK 952
Query: 963 LLQLC 967
L QL
Sbjct: 953 LNQLL 957
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 17/148 (11%)
Query: 20 SPSPEPRRAAERSLAEMADRPNYG-LAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPA 78
SP +R ++ L ++ P++ + L ++ DE R + + KN+++ A
Sbjct: 24 SPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVK---AHF 80
Query: 79 SDRNSGPTLAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLP 138
+ +G T D IKS + + S+P I++ + + + + ++WP LLP
Sbjct: 81 QNFPNGVT---------DFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLP 131
Query: 139 ELIANLKDAAQSNNYVSINGILGTANSI 166
+L + L S +Y + G G I
Sbjct: 132 KLCSLL----DSEDYNTCEGAFGALQKI 155
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 17/148 (11%)
Query: 20 SPSPEPRRAAERSLAEMADRPNYG-LAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPA 78
SP +R ++ L ++ P++ + L ++ DE R + + KN+++ A
Sbjct: 24 SPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVK---AHF 80
Query: 79 SDRNSGPTLAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLP 138
+ +G T D IKS + + S+P I++ + + + + ++WP LLP
Sbjct: 81 QNFPNGVT---------DFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLP 131
Query: 139 ELIANLKDAAQSNNYVSINGILGTANSI 166
+L + L S +Y + G G I
Sbjct: 132 KLCSLL----DSEDYNTCEGAFGALQKI 155
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 5/132 (3%)
Query: 18 TLSPSPEPRRAAERSL--AEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRW 75
T+SP AA++ L A + + P + + + R++A + R AA + KN L +
Sbjct: 10 TVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKD 69
Query: 76 APASDRNSGPTLAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFP-KHWP 134
+ LA +A + ++K+ ++ + T T R S S+ + + + P WP
Sbjct: 70 PDIKAQYQQRWLAIDANARR-EVKNYVLQTLGTETYR-PSSASQCVAGIACAEIPVNQWP 127
Query: 135 TLLPELIANLKD 146
L+P+L+AN+ +
Sbjct: 128 ELIPQLVANVTN 139
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 5/132 (3%)
Query: 18 TLSPSPEPRRAAERSL--AEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRW 75
T+SP AA++ L A + + P + + + R++A + R AA + KN L +
Sbjct: 10 TVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKD 69
Query: 76 APASDRNSGPTLAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFP-KHWP 134
+ LA +A + ++K+ ++ + T T R S S+ + + + P WP
Sbjct: 70 PDIKAQYQQRWLAIDANARR-EVKNYVLHTLGTETYR-PSSASQCVAGIACAEIPVNQWP 127
Query: 135 TLLPELIANLKD 146
L+P+L+AN+ +
Sbjct: 128 ELIPQLVANVTN 139
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 5/132 (3%)
Query: 18 TLSPSPEPRRAAERSL--AEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRW 75
T+SP AA++ L A + + P + + + R++A + R AA + KN L +
Sbjct: 10 TVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKD 69
Query: 76 APASDRNSGPTLAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFP-KHWP 134
+ LA +A + ++K+ ++ + T T R S S+ + + + P WP
Sbjct: 70 PDIKAQYQQRWLAIDANARR-EVKNYVLQTLGTETYR-PSSASQCVAGIACAEIPVSQWP 127
Query: 135 TLLPELIANLKD 146
L+P+L+AN+ +
Sbjct: 128 ELIPQLVANVTN 139
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 17/148 (11%)
Query: 20 SPSPEPRRAAERSLAEMADRPNYG-LAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPA 78
SP +R ++ L ++ P++ + L ++ DE R + + KN+++ A
Sbjct: 24 SPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVK---AHF 80
Query: 79 SDRNSGPTLAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLP 138
+ +G T D IKS + + S+P I++ + + + + ++WP LLP
Sbjct: 81 QNFPNGVT---------DFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLP 131
Query: 139 ELIANLKDAAQSNNYVSINGILGTANSI 166
+L + L S +Y + G G I
Sbjct: 132 KLCSLL----DSEDYNTCEGAFGALQKI 155
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 17/148 (11%)
Query: 20 SPSPEPRRAAERSLAEMADRPNYG-LAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPA 78
SP +R ++ L ++ P++ + L ++ DE R + + KN+++ A
Sbjct: 24 SPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVK---AHF 80
Query: 79 SDRNSGPTLAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLP 138
+ +G T D IKS + + S+P I++ + + + + ++WP LLP
Sbjct: 81 QNFPNGVT---------DFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLP 131
Query: 139 ELIANLKDAAQSNNYVSINGILGTANSI 166
+L + L S +Y + G G I
Sbjct: 132 KLCSLL----DSEDYNTCEGAFGALQKI 155
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 7/133 (5%)
Query: 18 TLSPSPEPRRAAERSL--AEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRW 75
T+SP AA++ L A + + P + + + R++A + R AA + KN L +
Sbjct: 10 TVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKD 69
Query: 76 APASDRNSGPTLAPILDAE-KDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFP-KHW 133
+ LA +DA + ++K+ ++ + T T R S S+ + + + P W
Sbjct: 70 PDIKAQYQQRWLA--IDANARREVKNYVLQTLGTETYR-PSSASQCVAGIACAEIPVNQW 126
Query: 134 PTLLPELIANLKD 146
P L+P+L+AN+ +
Sbjct: 127 PELIPQLVANVTN 139
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 7/133 (5%)
Query: 18 TLSPSPEPRRAAERSL--AEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRW 75
T+SP AA++ L A + + P + + + R++A + R AA + KN L +
Sbjct: 10 TVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKD 69
Query: 76 APASDRNSGPTLAPILDAE-KDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFP-KHW 133
+ LA +DA + ++K+ ++ + T T R S S+ + + + P W
Sbjct: 70 PDIKAQYQQRWLA--IDANARREVKNYVLQTLGTETYR-PSSASQCVAGIACAEIPVNQW 126
Query: 134 PTLLPELIANLKD 146
P L+P+L+AN+ +
Sbjct: 127 PELIPQLVANVTN 139
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
Length = 442
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 7/133 (5%)
Query: 18 TLSPSPEPRRAAERSL--AEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRW 75
T+SP AA++ L A + + P + + + R++A + R AA + KN L +
Sbjct: 10 TVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKD 69
Query: 76 APASDRNSGPTLAPILDAE-KDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFP-KHW 133
+ LA +DA + ++K+ ++ + T T R S S+ + + + P W
Sbjct: 70 PDIKAQYQQRWLA--IDANARREVKNYVLHTLGTETYR-PSSASQCVAGIACAEIPVNQW 126
Query: 134 PTLLPELIANLKD 146
P L+P+L+AN+ +
Sbjct: 127 PELIPQLVANVTN 139
>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta
pdb|1GCJ|B Chain B, N-Terminal Fragment Of Importin-Beta
Length = 460
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 5/132 (3%)
Query: 18 TLSPSPEPRRAAERSL--AEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRW 75
T+SP AA++ L A + + P + + + R++A + R AA + KN L +
Sbjct: 16 TVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKD 75
Query: 76 APASDRNSGPTLAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFP-KHWP 134
+ LA +A + ++K+ ++ + T T R S S+ + + + P WP
Sbjct: 76 PDIKAQYQQRWLAIDANARR-EVKNYVLQTLGTETYR-PSSASQCVAGIACAEIPVSQWP 133
Query: 135 TLLPELIANLKD 146
L+P+L+AN+ +
Sbjct: 134 ELIPQLVANVTN 145
>pdb|3A6P|A Chain A, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|F Chain F, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
Length = 1204
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 20/101 (19%)
Query: 47 LRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPTLAPILDAEKDQIKSLIVGLM 106
LRL AE+T +RH ++ ++FRW S EK +K+ ++ L+
Sbjct: 52 LRL-AEKTQVAIVRHFGLQILEHVVKFRWNGMSR------------LEKVYLKNSVMELI 98
Query: 107 LTST-------PRIQSQLSEALVVVGNHDFPKHWPTLLPEL 140
T I+ LS +V + ++P+HWP +L EL
Sbjct: 99 ANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIEL 139
>pdb|3ZN3|A Chain A, N-terminal Domain Of S. Pombe Cdc23 Apc Subunit
Length = 291
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 718 FLQKVPREIAQEGKLREVLGIFNMLVLSPSTDEQGFYVLNTIVESLEY-GVIAQFVPHIW 776
FL+ + +A E K E L+ S+ + FY ++ ++ESL Y G ++ ++
Sbjct: 103 FLRLYSKYLAGEKKSEEENETLLNTNLTLSSTNREFYYISEVLESLHYQGNKDPYLLYLS 162
Query: 777 GVLF-TRLQNKRTVKFVKSLLIFMSLF 802
GV++ R Q+ + + F+KS ++ F
Sbjct: 163 GVVYRKRKQDSKAIDFLKSCVLKAPFF 189
>pdb|3GJX|A Chain A, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|D Chain D, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3NBY|A Chain A, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|D Chain D, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|A Chain A, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|D Chain D, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|A Chain A, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|D Chain D, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC1|A Chain A, Crystal Structure Of The Crm1-Rangtp Complex
Length = 1073
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
Query: 98 IKSLIVGLML--TSTPRIQ-------SQLSEALVVVGNHDFPKHWPTLLPELIA 142
IK +VGL++ +S P +L+ LV + ++PKHWPT + +++
Sbjct: 104 IKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVG 157
>pdb|3GB8|A Chain A, Crystal Structure Of Crm1SNURPORTIN-1 Complex
Length = 1071
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
Query: 98 IKSLIVGLML--TSTPRIQ-------SQLSEALVVVGNHDFPKHWPTLLPELIA 142
IK +VGL++ +S P +L+ LV + ++PKHWPT + +++
Sbjct: 102 IKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVG 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,311,724
Number of Sequences: 62578
Number of extensions: 1009904
Number of successful extensions: 2129
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 2091
Number of HSP's gapped (non-prelim): 40
length of query: 975
length of database: 14,973,337
effective HSP length: 108
effective length of query: 867
effective length of database: 8,214,913
effective search space: 7122329571
effective search space used: 7122329571
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)