Query 002048
Match_columns 975
No_of_seqs 255 out of 1517
Neff 9.6
Searched_HMMs 46136
Date Thu Mar 28 15:20:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002048.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002048hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1992 Nuclear export recepto 100.0 1E-150 3E-155 1226.4 85.9 952 7-970 3-960 (960)
2 KOG1991 Nuclear transport rece 100.0 1E-122 2E-127 1032.9 77.2 915 7-971 2-1002(1010)
3 COG5656 SXM1 Importin, protein 100.0 7.6E-98 2E-102 802.4 74.9 910 8-968 2-969 (970)
4 KOG1993 Nuclear transport rece 100.0 1.5E-85 3.2E-90 713.0 65.3 907 11-968 2-976 (978)
5 COG5657 CSE1 CAS/CSE protein i 100.0 7.5E-82 1.6E-86 698.8 62.4 917 10-967 5-944 (947)
6 KOG2274 Predicted importin 9 [ 100.0 8.1E-72 1.8E-76 615.9 71.3 883 7-967 2-1004(1005)
7 PF03378 CAS_CSE1: CAS/CSE pro 100.0 5.8E-66 1.2E-70 568.9 38.0 431 535-966 1-435 (435)
8 PF08506 Cse1: Cse1; InterPro 100.0 8.3E-65 1.8E-69 548.8 36.4 365 166-534 1-370 (370)
9 KOG2023 Nuclear transport rece 100.0 3.1E-55 6.6E-60 468.0 49.0 819 1-967 3-883 (885)
10 KOG2171 Karyopherin (importin) 100.0 1.8E-45 4E-50 421.7 55.2 668 7-784 2-693 (1075)
11 KOG1241 Karyopherin (importin) 100.0 5.4E-36 1.2E-40 326.9 49.7 679 10-781 2-730 (859)
12 COG5215 KAP95 Karyopherin (imp 100.0 1.8E-29 3.8E-34 266.5 51.9 670 10-780 5-729 (858)
13 COG5101 CRM1 Importin beta-rel 99.9 9.1E-16 2E-20 164.9 55.4 511 5-568 10-627 (1053)
14 KOG2022 Nuclear transport rece 99.8 1.4E-14 3.1E-19 162.7 60.6 607 5-671 3-725 (982)
15 KOG2171 Karyopherin (importin) 99.7 1.1E-09 2.4E-14 128.4 67.7 437 20-573 48-529 (1075)
16 KOG2023 Nuclear transport rece 99.6 3.8E-12 8.3E-17 138.7 34.4 479 247-805 171-733 (885)
17 KOG2021 Nuclear mRNA export fa 99.6 5.9E-11 1.3E-15 131.3 43.7 489 9-569 3-585 (980)
18 PF03810 IBN_N: Importin-beta 99.4 1.4E-12 3.1E-17 109.7 8.7 76 29-108 1-77 (77)
19 KOG1241 Karyopherin (importin) 99.3 8.1E-07 1.8E-11 99.8 49.3 563 11-682 40-690 (859)
20 KOG2081 Nuclear transport regu 99.2 2.7E-07 5.9E-12 101.0 38.3 438 27-541 2-497 (559)
21 KOG1824 TATA-binding protein-i 99.1 7.8E-05 1.7E-09 86.0 52.7 580 13-788 9-625 (1233)
22 KOG2020 Nuclear transport rece 99.0 4.4E-07 9.4E-12 109.3 34.4 128 7-147 8-146 (1041)
23 COG5215 KAP95 Karyopherin (imp 98.8 0.00044 9.6E-09 75.7 51.8 369 389-788 378-841 (858)
24 KOG1824 TATA-binding protein-i 98.6 0.0021 4.6E-08 74.7 43.8 493 101-683 178-726 (1233)
25 PF08389 Xpo1: Exportin 1-like 98.6 4.8E-07 1E-11 87.2 12.8 132 110-260 1-136 (148)
26 PLN03200 cellulose synthase-in 98.0 0.15 3.2E-06 67.0 51.7 646 1-762 5-724 (2102)
27 PTZ00429 beta-adaptin; Provisi 98.0 0.08 1.7E-06 63.8 47.8 429 9-540 35-508 (746)
28 KOG0212 Uncharacterized conser 97.9 0.0062 1.3E-07 67.2 25.8 126 390-574 13-139 (675)
29 PLN03200 cellulose synthase-in 97.9 0.25 5.5E-06 65.0 47.7 648 9-785 102-791 (2102)
30 PF01602 Adaptin_N: Adaptin N 97.8 0.027 5.9E-07 66.9 33.2 202 277-540 281-484 (526)
31 PF01602 Adaptin_N: Adaptin N 97.8 0.18 3.9E-06 59.9 43.7 165 390-589 317-483 (526)
32 KOG1991 Nuclear transport rece 97.7 0.21 4.6E-06 59.4 52.4 371 21-449 101-532 (1010)
33 KOG1992 Nuclear export recepto 97.6 0.26 5.6E-06 57.5 51.8 240 484-746 510-776 (960)
34 KOG1242 Protein containing ada 97.6 0.0057 1.2E-07 68.9 20.1 233 390-662 229-465 (569)
35 KOG2274 Predicted importin 9 [ 97.5 0.38 8.2E-06 56.8 50.8 243 484-742 503-759 (1005)
36 PTZ00429 beta-adaptin; Provisi 97.5 0.14 3E-06 61.8 31.3 124 391-540 47-170 (746)
37 KOG0915 Uncharacterized conser 97.5 0.04 8.8E-07 67.9 26.5 344 432-817 968-1319(1702)
38 KOG0915 Uncharacterized conser 97.4 0.66 1.4E-05 57.9 38.2 310 276-661 1052-1367(1702)
39 PF12755 Vac14_Fab1_bd: Vacuol 97.2 0.0022 4.7E-08 55.7 8.8 77 489-574 3-82 (97)
40 KOG1242 Protein containing ada 97.2 0.19 4.2E-06 57.0 25.6 243 505-776 211-459 (569)
41 KOG1020 Sister chromatid cohes 97.0 0.73 1.6E-05 57.5 30.0 312 394-743 794-1170(1692)
42 PF10508 Proteasom_PSMB: Prote 97.0 0.5 1.1E-05 55.2 28.5 191 469-682 78-281 (503)
43 KOG0213 Splicing factor 3b, su 96.9 1.3 2.8E-05 51.2 31.8 247 509-785 715-971 (1172)
44 KOG0166 Karyopherin (importin) 96.9 0.14 3.1E-06 57.6 21.2 323 508-860 107-440 (514)
45 KOG1058 Vesicle coat complex C 96.8 0.62 1.4E-05 53.9 26.0 82 470-568 101-182 (948)
46 PF03378 CAS_CSE1: CAS/CSE pro 96.8 0.13 2.7E-06 58.3 21.1 220 507-745 23-254 (435)
47 KOG1410 Nuclear transport rece 96.8 1.3 2.9E-05 50.4 60.1 134 20-171 17-160 (1082)
48 PF12719 Cnd3: Nuclear condens 96.8 0.11 2.5E-06 56.1 20.2 189 462-662 21-209 (298)
49 KOG0213 Splicing factor 3b, su 96.8 1.6 3.5E-05 50.4 43.7 155 7-168 361-541 (1172)
50 KOG1248 Uncharacterized conser 96.8 2.3 5.1E-05 52.2 47.5 110 729-848 822-933 (1176)
51 PF05918 API5: Apoptosis inhib 96.6 0.76 1.6E-05 52.9 25.0 290 485-809 35-349 (556)
52 PF13513 HEAT_EZ: HEAT-like re 96.5 0.0033 7.2E-08 48.4 4.2 52 486-537 1-55 (55)
53 KOG1248 Uncharacterized conser 96.5 3.4 7.3E-05 50.8 58.4 398 359-785 501-922 (1176)
54 PF10508 Proteasom_PSMB: Prote 96.5 0.89 1.9E-05 53.1 25.5 250 397-678 58-318 (503)
55 KOG0212 Uncharacterized conser 96.3 2.6 5.5E-05 47.5 26.1 301 506-834 204-514 (675)
56 PF12348 CLASP_N: CLASP N term 96.3 0.14 3.1E-06 53.0 15.9 180 432-636 18-208 (228)
57 KOG1062 Vesicle coat complex A 96.0 4.7 0.0001 47.5 32.9 149 432-613 81-232 (866)
58 KOG1059 Vesicle coat complex A 95.8 1.2 2.6E-05 51.5 20.8 139 469-635 145-284 (877)
59 PF08167 RIX1: rRNA processing 95.7 0.13 2.7E-06 50.1 11.6 130 471-608 28-163 (165)
60 KOG0166 Karyopherin (importin) 95.6 0.48 1E-05 53.6 17.0 222 435-682 124-354 (514)
61 KOG1059 Vesicle coat complex A 95.6 6.2 0.00013 45.9 31.2 205 278-540 159-366 (877)
62 COG5181 HSH155 U2 snRNP splice 95.6 4.5 9.8E-05 46.0 23.8 186 397-610 301-492 (975)
63 KOG1240 Protein kinase contain 95.6 0.049 1.1E-06 65.7 9.6 212 485-703 436-712 (1431)
64 KOG1058 Vesicle coat complex C 95.5 1.9 4.2E-05 50.0 20.9 154 376-567 110-290 (948)
65 PRK09687 putative lyase; Provi 95.3 0.87 1.9E-05 48.5 17.2 47 484-537 140-186 (280)
66 PF12717 Cnd1: non-SMC mitotic 95.1 1.4 3E-05 43.6 17.0 75 485-572 1-75 (178)
67 COG5240 SEC21 Vesicle coat com 94.9 8.5 0.00019 43.5 34.4 223 278-538 318-554 (898)
68 COG5240 SEC21 Vesicle coat com 94.8 9.1 0.0002 43.3 33.5 344 360-748 162-540 (898)
69 PF12460 MMS19_C: RNAPII trans 94.8 9.7 0.00021 43.4 25.2 212 464-698 186-413 (415)
70 KOG1062 Vesicle coat complex A 94.6 13 0.00029 44.0 31.3 98 472-589 354-451 (866)
71 PF02985 HEAT: HEAT repeat; I 94.5 0.059 1.3E-06 35.6 3.6 30 511-540 1-30 (31)
72 PF12460 MMS19_C: RNAPII trans 94.4 12 0.00025 42.8 33.3 193 391-606 204-412 (415)
73 cd00020 ARM Armadillo/beta-cat 94.4 0.086 1.9E-06 48.0 6.0 93 433-538 19-119 (120)
74 KOG0211 Protein phosphatase 2A 94.3 16 0.00035 44.2 30.6 132 390-538 531-663 (759)
75 PF10521 DUF2454: Protein of u 94.3 3.7 8E-05 43.9 18.8 165 493-661 101-276 (282)
76 PRK09687 putative lyase; Provi 94.2 1.7 3.7E-05 46.3 16.1 85 432-538 34-119 (280)
77 PF12348 CLASP_N: CLASP N term 94.1 1.8 4E-05 44.7 16.0 175 389-584 19-201 (228)
78 KOG1060 Vesicle coat complex A 94.1 15 0.00032 43.5 23.5 128 432-589 119-246 (968)
79 PF12755 Vac14_Fab1_bd: Vacuol 94.1 0.25 5.5E-06 42.9 7.7 91 437-538 2-95 (97)
80 KOG1240 Protein kinase contain 93.7 7 0.00015 48.2 20.8 131 392-540 593-726 (1431)
81 PF08167 RIX1: rRNA processing 93.5 2 4.3E-05 41.8 13.8 137 504-655 19-164 (165)
82 COG5096 Vesicle coat complex, 93.0 26 0.00056 42.2 29.9 177 391-607 34-211 (757)
83 KOG0946 ER-Golgi vesicle-tethe 93.0 20 0.00044 42.4 22.2 117 391-541 37-153 (970)
84 PF05004 IFRD: Interferon-rela 92.8 3.5 7.6E-05 44.6 15.7 170 394-572 103-285 (309)
85 COG5181 HSH155 U2 snRNP splice 92.6 23 0.0005 40.6 37.2 155 7-169 166-347 (975)
86 PF14500 MMS19_N: Dos2-interac 92.5 16 0.00034 38.5 21.0 239 474-779 5-255 (262)
87 cd00020 ARM Armadillo/beta-cat 91.6 0.41 8.8E-06 43.5 6.0 57 484-540 19-79 (120)
88 PF13646 HEAT_2: HEAT repeats; 91.3 0.81 1.8E-05 38.9 7.1 77 432-535 11-88 (88)
89 PF12717 Cnd1: non-SMC mitotic 90.5 2.7 5.8E-05 41.5 10.9 111 436-568 3-113 (178)
90 PF13646 HEAT_2: HEAT repeats; 90.4 0.77 1.7E-05 39.0 6.2 46 484-536 12-57 (88)
91 PF08064 UME: UME (NUC010) dom 90.3 3 6.5E-05 37.1 9.9 77 553-636 4-85 (107)
92 KOG1943 Beta-tubulin folding c 89.7 61 0.0013 40.1 41.0 70 93-169 337-410 (1133)
93 smart00802 UME Domain in UVSB 89.6 4.3 9.2E-05 36.0 10.1 77 553-636 4-85 (107)
94 KOG2956 CLIP-associating prote 89.1 18 0.0004 40.2 16.3 217 367-609 271-499 (516)
95 PF10363 DUF2435: Protein of u 88.8 3.5 7.6E-05 35.4 8.8 70 510-589 3-72 (92)
96 KOG2022 Nuclear transport rece 88.5 66 0.0014 38.9 25.9 275 436-725 562-872 (982)
97 KOG1061 Vesicle coat complex A 88.5 8.6 0.00019 45.3 14.2 151 432-609 97-248 (734)
98 PF04826 Arm_2: Armadillo-like 87.8 17 0.00036 38.1 14.9 183 473-681 17-207 (254)
99 PF13513 HEAT_EZ: HEAT-like re 87.7 0.57 1.2E-05 35.8 3.1 40 525-573 2-41 (55)
100 PF10274 ParcG: Parkin co-regu 87.6 8 0.00017 37.7 11.4 98 551-658 33-132 (183)
101 PF10274 ParcG: Parkin co-regu 87.4 2.7 5.8E-05 41.0 8.0 91 508-606 36-130 (183)
102 KOG1078 Vesicle coat complex C 86.7 78 0.0017 37.8 29.6 222 277-538 296-531 (865)
103 KOG1020 Sister chromatid cohes 85.9 1.2E+02 0.0026 39.2 23.9 35 506-540 812-846 (1692)
104 KOG1061 Vesicle coat complex A 85.8 33 0.00072 40.7 16.9 69 465-540 83-151 (734)
105 PF08767 CRM1_C: CRM1 C termin 85.3 7.8 0.00017 42.2 11.4 160 624-788 46-228 (319)
106 KOG1077 Vesicle coat complex A 84.7 92 0.002 36.8 26.6 53 390-452 382-435 (938)
107 PF08767 CRM1_C: CRM1 C termin 84.5 12 0.00025 40.9 12.3 96 623-721 90-195 (319)
108 KOG1077 Vesicle coat complex A 84.2 95 0.0021 36.6 27.8 212 434-682 124-342 (938)
109 PRK13800 putative oxidoreducta 83.3 7.6 0.00016 49.1 11.7 79 433-537 787-865 (897)
110 PF11865 DUF3385: Domain of un 83.3 16 0.00035 35.2 11.4 67 509-584 85-152 (160)
111 KOG4653 Uncharacterized conser 83.1 74 0.0016 38.4 18.1 136 484-636 739-878 (982)
112 PF07571 DUF1546: Protein of u 82.6 8.1 0.00018 33.2 8.0 60 389-449 18-77 (92)
113 PF05004 IFRD: Interferon-rela 81.4 82 0.0018 34.2 17.2 164 507-680 40-216 (309)
114 PF08064 UME: UME (NUC010) dom 81.2 3.5 7.5E-05 36.7 5.5 78 484-570 27-106 (107)
115 PF00514 Arm: Armadillo/beta-c 79.9 3 6.6E-05 29.5 3.8 29 510-538 12-40 (41)
116 COG5101 CRM1 Importin beta-rel 79.7 30 0.00064 39.9 13.0 272 490-779 501-832 (1053)
117 PF12719 Cnd3: Nuclear condens 79.2 81 0.0018 34.0 16.4 147 16-172 34-185 (298)
118 PF01603 B56: Protein phosphat 79.0 1.2E+02 0.0026 34.4 19.2 160 394-572 150-309 (409)
119 KOG2549 Transcription initiati 78.9 21 0.00045 40.6 11.5 126 300-449 239-369 (576)
120 PRK13800 putative oxidoreducta 78.3 20 0.00043 45.4 13.0 115 14-165 626-740 (897)
121 COG5064 SRP1 Karyopherin (impo 76.2 2 4.2E-05 45.1 2.6 98 434-540 298-399 (526)
122 KOG2956 CLIP-associating prote 76.1 1.4E+02 0.0031 33.6 19.9 158 9-196 286-455 (516)
123 PF10521 DUF2454: Protein of u 75.9 57 0.0012 34.9 13.9 53 115-171 98-151 (282)
124 PF01603 B56: Protein phosphat 74.5 1.6E+02 0.0035 33.4 26.3 115 665-787 190-310 (409)
125 PF14500 MMS19_N: Dos2-interac 73.4 1.3E+02 0.0027 31.8 23.9 79 277-365 96-174 (262)
126 PF02985 HEAT: HEAT repeat; I 73.2 7.5 0.00016 25.5 4.0 30 136-169 1-30 (31)
127 KOG2933 Uncharacterized conser 72.4 22 0.00047 37.5 8.9 131 391-537 102-232 (334)
128 KOG4653 Uncharacterized conser 72.4 1.4E+02 0.003 36.4 16.2 169 509-698 726-895 (982)
129 PF12231 Rif1_N: Rap1-interact 72.2 1.7E+02 0.0037 32.7 24.1 169 387-568 4-187 (372)
130 KOG0392 SNF2 family DNA-depend 71.8 30 0.00065 43.3 11.2 168 394-589 750-925 (1549)
131 KOG0168 Putative ubiquitin fus 71.2 1E+02 0.0023 37.2 14.9 167 508-695 209-379 (1051)
132 PF04118 Dopey_N: Dopey, N-ter 70.8 1.6E+02 0.0034 31.8 16.2 172 112-336 4-199 (307)
133 KOG2025 Chromosome condensatio 69.4 42 0.00091 39.5 11.1 73 464-540 81-156 (892)
134 PF08506 Cse1: Cse1; InterPro 68.9 2E+02 0.0043 32.1 17.9 87 390-478 109-198 (370)
135 PF08569 Mo25: Mo25-like; Int 68.7 1.3E+02 0.0029 32.8 14.7 128 686-818 163-298 (335)
136 PF11865 DUF3385: Domain of un 68.5 58 0.0013 31.4 10.7 148 507-679 7-157 (160)
137 KOG0414 Chromosome condensatio 68.3 3.3E+02 0.0072 34.5 29.7 136 394-540 292-429 (1251)
138 KOG2021 Nuclear mRNA export fa 67.0 2.9E+02 0.0062 33.3 24.2 72 524-607 711-783 (980)
139 COG5116 RPN2 26S proteasome re 66.2 35 0.00076 38.8 9.4 77 484-572 598-674 (926)
140 PF13251 DUF4042: Domain of un 64.2 50 0.0011 32.5 9.3 146 393-541 2-176 (182)
141 PF13001 Ecm29: Proteasome sta 64.0 85 0.0018 36.8 12.9 84 11-110 25-115 (501)
142 smart00802 UME Domain in UVSB 63.2 62 0.0013 28.7 8.8 88 509-607 10-103 (107)
143 PF08161 NUC173: NUC173 domain 61.7 57 0.0012 32.7 9.4 90 577-674 17-122 (198)
144 PF05804 KAP: Kinesin-associat 61.6 3.8E+02 0.0081 32.8 19.3 110 486-609 264-381 (708)
145 COG5656 SXM1 Importin, protein 61.2 3.6E+02 0.0078 32.4 41.6 75 623-698 700-776 (970)
146 PF13251 DUF4042: Domain of un 60.7 78 0.0017 31.2 9.9 24 517-540 47-70 (182)
147 COG1698 Uncharacterized protei 59.4 35 0.00075 28.6 5.9 60 2-61 9-79 (93)
148 cd08050 TAF6 TATA Binding Prot 59.4 51 0.0011 36.3 9.5 125 300-449 210-339 (343)
149 COG5096 Vesicle coat complex, 57.7 1.2E+02 0.0026 36.8 12.6 131 25-169 36-196 (757)
150 COG5098 Chromosome condensatio 57.5 1.6E+02 0.0035 34.8 12.8 136 389-539 275-415 (1128)
151 KOG2011 Sister chromatid cohes 57.4 5E+02 0.011 32.9 20.1 73 465-541 284-357 (1048)
152 COG5064 SRP1 Karyopherin (impo 56.4 1.5E+02 0.0033 31.8 11.4 152 511-677 115-270 (526)
153 smart00185 ARM Armadillo/beta- 56.1 15 0.00033 25.4 3.2 28 511-538 13-40 (41)
154 KOG2062 26S proteasome regulat 54.8 1E+02 0.0023 36.6 10.9 76 484-571 601-676 (929)
155 PF10363 DUF2435: Protein of u 53.2 51 0.0011 28.3 6.5 63 474-540 9-73 (92)
156 PF01465 GRIP: GRIP domain; I 52.4 37 0.00081 24.8 4.7 36 93-128 3-38 (46)
157 KOG1820 Microtubule-associated 52.1 2.4E+02 0.0051 35.0 14.0 182 387-594 264-449 (815)
158 KOG1967 DNA repair/transcripti 52.0 59 0.0013 39.5 8.6 140 646-787 863-1008(1030)
159 KOG4224 Armadillo repeat prote 51.9 1.9E+02 0.004 31.4 11.4 187 471-680 211-406 (550)
160 PF05804 KAP: Kinesin-associat 51.7 2.7E+02 0.0058 34.0 14.3 33 508-540 329-361 (708)
161 KOG2160 Armadillo/beta-catenin 51.2 2.6E+02 0.0056 30.5 12.6 112 513-636 127-242 (342)
162 KOG2032 Uncharacterized conser 50.8 4.3E+02 0.0094 30.2 18.7 116 506-635 254-372 (533)
163 PF05918 API5: Apoptosis inhib 49.4 5E+02 0.011 30.6 25.4 301 277-641 36-348 (556)
164 KOG1967 DNA repair/transcripti 49.3 1.7E+02 0.0037 35.9 11.7 81 484-572 921-1007(1030)
165 KOG2160 Armadillo/beta-catenin 48.9 2E+02 0.0044 31.3 11.4 138 390-540 137-283 (342)
166 TIGR02270 conserved hypothetic 48.7 90 0.0019 35.3 9.4 77 432-536 128-204 (410)
167 KOG2549 Transcription initiati 48.4 4.9E+02 0.011 30.2 16.3 86 222-314 261-349 (576)
168 KOG2256 Predicted protein invo 48.2 3.6E+02 0.0077 31.9 13.8 181 506-696 278-476 (661)
169 KOG0392 SNF2 family DNA-depend 46.2 1.4E+02 0.003 38.0 10.6 86 508-605 814-901 (1549)
170 PF04826 Arm_2: Armadillo-like 46.0 3.8E+02 0.0081 28.1 17.2 139 4-168 10-163 (254)
171 KOG2137 Protein kinase [Signal 46.0 2.5E+02 0.0054 33.6 12.3 141 500-662 378-520 (700)
172 cd08050 TAF6 TATA Binding Prot 46.0 3.8E+02 0.0083 29.6 13.6 141 506-661 174-320 (343)
173 KOG1525 Sister chromatid cohes 44.8 8.6E+02 0.019 31.9 26.0 183 551-784 43-232 (1266)
174 KOG1078 Vesicle coat complex C 44.5 6.6E+02 0.014 30.5 31.2 217 507-748 279-517 (865)
175 PF12231 Rif1_N: Rap1-interact 43.9 5E+02 0.011 29.0 22.9 217 485-748 59-288 (372)
176 PF13925 Katanin_con80: con80 42.5 40 0.00086 32.7 4.7 53 116-172 45-102 (164)
177 KOG2137 Protein kinase [Signal 41.7 7E+02 0.015 30.0 15.5 126 395-538 368-495 (700)
178 PF03224 V-ATPase_H_N: V-ATPas 40.6 5.1E+02 0.011 28.1 20.3 106 409-542 70-182 (312)
179 PF09324 DUF1981: Domain of un 39.8 91 0.002 26.4 5.9 51 111-165 32-85 (86)
180 KOG2734 Uncharacterized conser 39.7 5.4E+02 0.012 29.0 12.8 64 668-745 244-307 (536)
181 smart00755 Grip golgin-97, Ran 39.6 61 0.0013 23.7 4.1 34 94-128 3-36 (46)
182 PF00514 Arm: Armadillo/beta-c 39.0 95 0.0021 21.6 5.1 26 101-126 16-41 (41)
183 KOG1949 Uncharacterized conser 38.1 3.3E+02 0.0072 32.4 11.5 162 490-664 148-316 (1005)
184 KOG3961 Uncharacterized conser 37.7 88 0.0019 31.2 6.0 89 508-605 112-204 (262)
185 KOG1943 Beta-tubulin folding c 37.4 9.7E+02 0.021 30.4 40.5 136 8-171 468-614 (1133)
186 COG5116 RPN2 26S proteasome re 36.3 4.4E+02 0.0095 30.6 11.8 105 485-609 565-671 (926)
187 smart00638 LPD_N Lipoprotein N 36.0 1.4E+02 0.0031 35.6 9.2 102 413-535 440-541 (574)
188 KOG2032 Uncharacterized conser 35.7 7.3E+02 0.016 28.5 18.3 81 484-572 270-354 (533)
189 COG5218 YCG1 Chromosome conden 33.8 7.8E+02 0.017 28.9 13.3 75 463-541 86-163 (885)
190 PRK04330 hypothetical protein; 33.7 2.2E+02 0.0048 24.1 6.9 32 7-38 10-44 (88)
191 KOG0414 Chromosome condensatio 33.0 4.4E+02 0.0095 33.6 12.1 127 398-540 898-1028(1251)
192 PF12830 Nipped-B_C: Sister ch 32.2 1.5E+02 0.0032 29.4 7.1 68 100-172 11-78 (187)
193 KOG2081 Nuclear transport regu 31.8 8.8E+02 0.019 28.3 16.0 50 732-782 386-438 (559)
194 COG1413 FOG: HEAT repeat [Ener 31.5 4.7E+02 0.01 28.5 11.8 144 10-165 75-239 (335)
195 PF12333 Ipi1_N: Rix1 complex 31.2 91 0.002 27.4 4.7 63 641-703 2-65 (102)
196 PLN03076 ARF guanine nucleotid 30.9 1.6E+03 0.035 31.0 27.7 102 56-170 1150-1255(1780)
197 PF03130 HEAT_PBS: PBS lyase H 30.3 37 0.0008 21.4 1.6 14 488-501 1-14 (27)
198 cd00870 PI3Ka_III Phosphoinosi 29.6 65 0.0014 31.2 3.8 59 488-566 62-122 (166)
199 KOG2933 Uncharacterized conser 29.4 3.5E+02 0.0075 29.0 9.1 90 506-610 125-215 (334)
200 PF06086 Pox_A30L_A26L: Orthop 29.3 61 0.0013 32.5 3.6 48 58-110 17-64 (220)
201 PF01347 Vitellogenin_N: Lipop 28.7 1.2E+02 0.0026 36.7 6.9 100 415-535 486-585 (618)
202 PF04388 Hamartin: Hamartin pr 28.7 9.6E+02 0.021 29.3 14.3 158 512-704 6-165 (668)
203 KOG2025 Chromosome condensatio 28.6 8.6E+02 0.019 29.3 12.8 54 486-539 56-114 (892)
204 smart00567 EZ_HEAT E-Z type HE 28.5 83 0.0018 20.1 3.1 28 487-521 2-29 (30)
205 PF12830 Nipped-B_C: Sister ch 28.4 1.6E+02 0.0034 29.3 6.5 65 9-75 8-77 (187)
206 PF14664 RICTOR_N: Rapamycin-i 28.3 6.5E+02 0.014 28.1 11.9 115 508-635 23-138 (371)
207 cd00869 PI3Ka_II Phosphoinosit 28.2 62 0.0013 31.4 3.4 39 516-566 75-115 (169)
208 COG5095 TAF6 Transcription ini 28.1 7.3E+02 0.016 26.3 11.0 131 508-657 195-335 (450)
209 cd00872 PI3Ka_I Phosphoinositi 28.1 73 0.0016 31.0 3.9 39 516-566 75-115 (171)
210 PF12054 DUF3535: Domain of un 27.8 3.8E+02 0.0081 30.8 10.2 56 486-541 99-157 (441)
211 cd07064 AlkD_like_1 A new stru 27.6 6.5E+02 0.014 25.4 11.2 117 393-539 62-179 (208)
212 PF04510 DUF577: Family of unk 27.1 5.9E+02 0.013 24.8 16.2 63 97-167 3-70 (174)
213 KOG1243 Protein kinase [Genera 26.9 5E+02 0.011 31.1 10.8 71 466-540 328-399 (690)
214 smart00145 PI3Ka Phosphoinosit 26.9 85 0.0018 31.0 4.2 63 485-565 57-119 (184)
215 TIGR02270 conserved hypothetic 26.2 1E+03 0.022 27.1 13.1 113 16-166 93-205 (410)
216 PF04388 Hamartin: Hamartin pr 26.0 1.3E+02 0.0028 36.6 6.3 75 486-569 82-161 (668)
217 PF12054 DUF3535: Domain of un 25.5 1.1E+03 0.023 27.2 17.4 76 435-522 101-180 (441)
218 PF03224 V-ATPase_H_N: V-ATPas 25.2 8.9E+02 0.019 26.1 18.3 123 40-168 54-179 (312)
219 KOG1488 Translational represso 24.7 1.1E+03 0.025 27.3 13.0 67 494-570 301-369 (503)
220 cd00864 PI3Ka Phosphoinositide 24.7 79 0.0017 30.1 3.4 38 516-565 75-114 (152)
221 KOG0946 ER-Golgi vesicle-tethe 24.6 1.4E+03 0.03 28.1 31.1 182 280-498 40-238 (970)
222 KOG1517 Guanine nucleotide bin 24.1 4.6E+02 0.01 33.0 10.0 58 484-541 612-673 (1387)
223 PF08146 BP28CT: BP28CT (NUC21 24.1 6.3E+02 0.014 24.1 15.2 55 282-336 86-145 (153)
224 PF11864 DUF3384: Domain of un 22.9 1.2E+03 0.026 26.9 26.3 53 393-450 6-58 (464)
225 PF12783 Sec7_N: Guanine nucle 22.8 6.9E+02 0.015 24.0 10.2 102 710-813 41-153 (168)
226 PLN03076 ARF guanine nucleotid 22.2 2.2E+03 0.048 29.7 22.4 239 510-763 1182-1491(1780)
227 PF08569 Mo25: Mo25-like; Int 22.1 1.1E+03 0.023 26.0 19.7 176 112-336 91-281 (335)
228 PF03685 UPF0147: Uncharacteri 21.6 1.8E+02 0.0039 24.5 4.3 32 7-38 7-41 (85)
229 PF08389 Xpo1: Exportin 1-like 21.4 2.1E+02 0.0045 26.6 5.8 47 486-534 100-148 (148)
230 PF08713 DNA_alkylation: DNA a 21.4 1.8E+02 0.0039 29.3 5.6 87 432-539 97-184 (213)
231 PF12783 Sec7_N: Guanine nucle 21.1 7.4E+02 0.016 23.8 10.6 106 277-407 36-147 (168)
232 PF14225 MOR2-PAG1_C: Cell mor 21.1 9.8E+02 0.021 25.2 16.1 146 507-683 108-258 (262)
233 cd00197 VHS_ENTH_ANTH VHS, ENT 20.9 3.4E+02 0.0075 24.1 6.8 81 412-501 34-115 (115)
No 1
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-150 Score=1226.42 Aligned_cols=952 Identities=46% Similarity=0.794 Sum_probs=904.2
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCCCC
Q 002048 7 TLQHLSQCFLHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPT 86 (975)
Q Consensus 7 ~~~~l~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~~ 86 (975)
+++.|.++|++|++||+++||.||..|++++.++||...|++++.+++.|.++|.+|+++|||+|||+|.+..++
T Consensus 3 ~le~l~~~l~qTl~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~----- 77 (960)
T KOG1992|consen 3 NLETLANYLLQTLSPDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDS----- 77 (960)
T ss_pred cHHHHHHHHHhcCCCCCccCchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCC-----
Confidence 688999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred cCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccCCChhHHhHHHHHHHHH
Q 002048 87 LAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSI 166 (975)
Q Consensus 87 ~~~i~~e~K~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i 166 (975)
+..|.+++|+.||..|+..|.+.+..|+.|++++++.|+++|||+.||+|+|++++.++++ |.+...|.|.+.|++
T Consensus 78 ~~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~----D~~~~~gVL~tahsi 153 (960)
T KOG1992|consen 78 PIKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSG----DFNVINGVLVTAHSI 153 (960)
T ss_pred ccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhcccc----chHHHHHHHHHHHHH
Confidence 2479999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHhhhccccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhcccCCCchHHHH
Q 002048 167 FKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFED 246 (975)
Q Consensus 167 ~k~~~~~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~~~lp~~~~~ 246 (975)
||+||+.+|||+++.||+.+++.++.++..+|.+....+... ..+...++.++..+.+++|+||+++++|+||||||
T Consensus 154 Fkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~---~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEd 230 (960)
T KOG1992|consen 154 FKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRH---ANDAAALNILFGVLLLICKLFYSLNFQDIPEFFED 230 (960)
T ss_pred HHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhc---ccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHh
Confidence 999999999999999999999999999999999988776554 45556778899999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcccCCcccCCCCcCchHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHhccCCCCcchHHH
Q 002048 247 HMREWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQGYLNDFALAVWTLLGNVSQSSSRDSLA 326 (975)
Q Consensus 247 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 326 (975)
||..||+.|+++++.++|.+.+++++++.+.++|..+|++++.|.+||+++|.+|+++|++.+|+++.+++..++||.++
T Consensus 231 nm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lv 310 (960)
T KOG1992|consen 231 NMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLV 310 (960)
T ss_pred hHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHH
Confidence 99999999999999999988765568899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh-chhhhhhcccCCCchhhHHHHhhcccCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHH
Q 002048 327 VTAIKFLTNV-STSVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIA 405 (975)
Q Consensus 327 ~~~l~fl~~~-~~~~~~~~~~~~~~l~~l~~~li~~~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~ 405 (975)
+.+++||+++ ++++|..+|.+.+.+.++|+.+++|+++++++|+|+|||||.||+||+++|+|.+|||++|+++++.|+
T Consensus 311 s~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~ 390 (960)
T KOG1992|consen 311 SKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLC 390 (960)
T ss_pred HHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHH
Confidence 9999999999 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhh---cCCCccccCcccHHHHHHHhcccccCCCCC
Q 002048 406 THYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKK---AGSTSISTDLVDVQSFFTSVIVPELQSPDV 482 (975)
Q Consensus 406 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~---~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~ 482 (975)
++|...+++++..+++..+++|..+|+.||+.||.+++++.+++.+. ++|++++++.+|+.+||.++++|+|.++++
T Consensus 391 ~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~v 470 (960)
T KOG1992|consen 391 KNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNV 470 (960)
T ss_pred HHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCcc
Confidence 99999999999999999999999999999999999999999999886 789999999999999999999999999888
Q ss_pred CCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHH
Q 002048 483 NAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLM 562 (975)
Q Consensus 483 ~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il 562 (975)
+++|+||+.+++++..||++++++++..++|.++.+|+.+..+|+.|||.|+++++..++..+...|.++.+.||+..++
T Consensus 471 n~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll 550 (960)
T KOG1992|consen 471 NEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILL 550 (960)
T ss_pred ccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999998876666789999999999999
Q ss_pred HHHHHhcCCCCchhhHHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCc
Q 002048 563 TSLFNAFKFPESEENQYIMKCIMRVLG-VAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDP 641 (975)
Q Consensus 563 ~~L~~ll~~~~~~~~~~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~ 641 (975)
..||+.++.+++.+|+|+|++|||++. ..+.+.|+++.++..|.+++++.+|||++|.|+|++||+++.+++..|..+|
T Consensus 551 ~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~ 630 (960)
T KOG1992|consen 551 TNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANP 630 (960)
T ss_pred HHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCc
Confidence 999999999988899999999999999 8899999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHhhHHHHHHHHhcccccchHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCccccccCCCccchHHHHHHHHcc
Q 002048 642 SLISAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKRSSNVPALVRLLQAFLQK 721 (975)
Q Consensus 642 ~~~~~l~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~~~~~~~~~~~~lf~~l~~~~l~~~~~~l~~~~~~L~~~i~~ 721 (975)
.....++..++|+|+.||++|+.||+||+||+++.+++.+..++++.|+.+||++++|.+|+..|++|+++++|.+|+..
T Consensus 631 ~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~ 710 (960)
T KOG1992|consen 631 SAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKT 710 (960)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999988779999999999999999999999999999999999999
Q ss_pred CccchhccCchHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcchhhHhhhHHHHHHHHHHHhhcCchhhHHHHHHHHHHH
Q 002048 722 VPREIAQEGKLREVLGIFNMLVLSPSTDEQGFYVLNTIVESLEYGVIAQFVPHIWGVLFTRLQNKRTVKFVKSLLIFMSL 801 (975)
Q Consensus 722 ~~~~~~~~~~~~~il~i~~~ll~~~~~~~~a~~ll~~ii~~~~~~~~~~~l~~il~~~l~~L~~~~~~~~~~~~i~~~~~ 801 (975)
|+..+.+.+.+..++++|++++.++.+|.+||.|+.+|+.+++...+.||+.+|+..+++|++++||++|++.+++|+++
T Consensus 711 g~~~~~~~~~l~~iLGifqkLiaSka~Dh~GF~LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT~kf~k~~~vF~~~ 790 (960)
T KOG1992|consen 711 GSQIVEAADKLSGILGIFQKLIASKANDHHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKTEKFVKSFIVFFSL 790 (960)
T ss_pred CchhhcccccchhHHHHHHHHhcCcccchhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 99999977679999999999999999999999999999999987778999999999999999999999999999999999
Q ss_pred HHHHhChHHHHHHHhhhcchhHHHHHHHHhhcCcccccchhhHHHHHHHHHHHhhcCcccccHHHhhhHHHHHHHHHHHh
Q 002048 802 FLVKHGPENLVNTMNAVQSGIILVILEQIWIPNLKLITGAIEWKLTAVASTRLICESPVLLDAAAVRHWGKMLDSIVTLL 881 (975)
Q Consensus 802 ~~~~~~~~~~l~~L~~~~~~~~~~~~~~~w~~~~~~~~~~~~~K~~~lal~~Ll~~~~~~l~~~~~~~~~~il~~~~~ll 881 (975)
+++.++....++.++.+|+|++++++.+.|+++.+++.+..+||++.+|.+++++..+...++.+...|+.++..+++++
T Consensus 791 ~~ik~~~~~l~e~~d~IQ~~~fg~l~e~~ii~~l~~i~~~~~rk~~avg~~~l~~e~~~~~d~~y~~l~~~ll~sii~lf 870 (960)
T KOG1992|consen 791 FTIKKGGLMLAEVIDGIQPGMFGMLLENFIIPELPKIILRVDRKIMAVGATGLLTETPELLDQKYAKLWGPLLFSIIVLF 870 (960)
T ss_pred HHHHhhhHHHHHHHhhcchhHHHHHHHHhccccchhhhhhhhHHHHHHHHhhhhhhcHHhhhHHHHhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988775555679999999999999
Q ss_pred cCCCccccCCC-CCCcccccccCcccccccccccCCCCCCCCCCCCChHHHHHHHHHHhhhhCCCCchhhhhhcCCHHHH
Q 002048 882 SRPEEERVEEE-PEMPDITENMGYTTAFVNLYNAGKKEEDPLKDIKDPKEFLVASLARISAVSPGRYPQIISENLEPANQ 960 (975)
Q Consensus 882 ~~~~~~~~~~~-~d~~d~~~~~~~~~~~~~l~~~~~~~~Dp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 960 (975)
+.|.+..-.++ .+.++.+++.||+..|++|.++++++.||+.++.|++.|+++.+..+++..||++++.+..+|+||.|
T Consensus 871 e~p~~~~~~~e~~e~~~i~e~~~f~~~F~~L~~a~~k~~Dpl~~i~~~k~y~a~sl~~~~~~~~g~~~~~i~~~l~~e~q 950 (960)
T KOG1992|consen 871 ELPSERTVLDEEEEMAEIEEDPGFQAAFSRLAYAGKKPHDPLAQIKDPKQYLAQSLNKLSTASPGRFPQTISTSLPPENQ 950 (960)
T ss_pred hCChhhhccCchhhhhhhhcccchhHHHHHHHcCCCCCCCchhhhhhHHHHHHHHHHHHhhcCCCCchhhhcccCCHHHH
Confidence 99776322222 23334555679999999999999999999999999999999999999999999999989888999999
Q ss_pred HHHHHHHHhc
Q 002048 961 SALLQLCSAF 970 (975)
Q Consensus 961 ~~l~~~~~~~ 970 (975)
.+||+|++.+
T Consensus 951 ~~Lq~~~~~~ 960 (960)
T KOG1992|consen 951 TYLQSYLQAA 960 (960)
T ss_pred HHHHHHhhcC
Confidence 9999998753
No 2
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.9e-123 Score=1032.85 Aligned_cols=915 Identities=20% Similarity=0.306 Sum_probs=778.8
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCCCC
Q 002048 7 TLQHLSQCFLHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPT 86 (975)
Q Consensus 7 ~~~~l~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~~ 86 (975)
+.+.+.++|.+|+++|+++|+.||++|++++++|||...|++|+.+++.+.+|||+|+|||||.|.++|+..+.. | .
T Consensus 2 d~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~--g-~ 78 (1010)
T KOG1991|consen 2 DLQSLLQIFRATIDSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAP--G-R 78 (1010)
T ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCC--C-C
Confidence 567899999999999999999999999999999999999999999999999999999999999999999987421 1 1
Q ss_pred cCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccCCChhHHhHHHHHHHHH
Q 002048 87 LAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSI 166 (975)
Q Consensus 87 ~~~i~~e~K~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i 166 (975)
+..|++++|..||++|+..++..|..+|.|+..|+..|...|||++||++++.+...++++ +.+.++|||.||+++
T Consensus 79 ~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~----~~~~vy~aLl~l~qL 154 (1010)
T KOG1991|consen 79 PFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQ----DANHVYGALLCLYQL 154 (1010)
T ss_pred cCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCc----chhhHHHHHHHHHHH
Confidence 4469999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHhhhccccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhcccCCCchHHH-
Q 002048 167 FKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFE- 245 (975)
Q Consensus 167 ~k~~~~~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~~~lp~~~~- 245 (975)
+|.||| +.++.|+.+..+++.++|.+++++.+++. . + + ....+++++|+|+|++++++++|..+.
T Consensus 155 ~k~ye~--k~~eeR~~l~~~v~~~fP~il~~~~~ll~----~---~-s----~~s~el~klIlKifks~~~~~LP~~L~~ 220 (1010)
T KOG1991|consen 155 FKTYEW--KKDEERQPLGEAVEELFPDILQIFNGLLS----Q---E-S----YQSVELQKLILKIFKSLIYYELPLELSA 220 (1010)
T ss_pred HHHHhh--ccccccccHHHHHHHHHHHHHHHHHhhcc----c---c-c----hHHHHHHHHHHHHHHHHHHHhCCHHhhC
Confidence 999998 56777889999999888888887766553 2 2 1 256789999999999999999998875
Q ss_pred -HhHHHHHHHHHHHhcccCCc--cc-CCCC-cCchHHHHHHHHHHHHHHHHHHhHH---------HHH-----hhHHHHH
Q 002048 246 -DHMREWMTEFKKYLTTNYPA--LE-STSD-GLGLVDGLRAAVCENISLYMKMNEE---------EFQ-----GYLNDFA 306 (975)
Q Consensus 246 -~~~~~~~~~~~~~l~~~~~~--l~-~~~~-~~~~~~~~k~~~~~~l~~~~~~~~~---------~f~-----~~~~~~~ 306 (975)
+.+..||++|+++++++.|. +. |.++ ..++|||||||++++++|+++||++ +|. .+++.++
T Consensus 221 ~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~il 300 (1010)
T KOG1991|consen 221 PETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGIL 300 (1010)
T ss_pred chhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHH
Confidence 68999999999999999883 32 4444 7889999999999999999999973 343 3556666
Q ss_pred HHHHHHHhccCC-CCcchHHHHHHHHHHHhh-chhhhhhcccCCCchhhHHHHhhcccCCCChhhHHHHhhCHHHHHhhc
Q 002048 307 LAVWTLLGNVSQ-SSSRDSLAVTAIKFLTNV-STSVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRD 384 (975)
Q Consensus 307 ~~~~~~l~~~~~-~~~~~~~~~~~l~fl~~~-~~~~~~~~~~~~~~l~~l~~~li~~~l~l~~~d~e~we~dp~efv~~~ 384 (975)
+.+++.+..++. ..-.+++...++.|+..| +.+.+++++ +||+..++..+|||.||++++|+|+||+||.||+|+.
T Consensus 301 e~~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll--~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~ 378 (1010)
T KOG1991|consen 301 EVFLKILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLL--KPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKK 378 (1010)
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHh--hhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhc
Confidence 666666666654 234689999999999999 766655666 8999999999999999999999999999999999999
Q ss_pred CC-CCcchhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCC--CCCchhHHHHHHHHHHHHhhhcCCCccccC
Q 002048 385 ME-GSDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANP--VANWKDKDCAIYLVVSLATKKAGSTSISTD 461 (975)
Q Consensus 385 ~d-~~d~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~--~~~w~~keaal~~ig~ia~~~~~g~~~~~~ 461 (975)
+| .+|.+||+.||.+|+..++.++|+.+++.++.|+.+.+++|..++ ..+.|+||||++++|++++.+.+.. .-
T Consensus 379 ~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s---~~ 455 (1010)
T KOG1991|consen 379 FDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKS---PY 455 (1010)
T ss_pred CchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCC---ch
Confidence 98 568899999999999999999999999999999999999997663 4579999999999999998873311 01
Q ss_pred cccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhc-cC-CHhHHHhHHHHHHHhhc-CCCchHHHHHHHHHHHHH
Q 002048 462 LVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRI-QI-PKIHAFQFFPDLVRFLG-AESNVVHSYAASCIEKLL 538 (975)
Q Consensus 462 ~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~-~~-~~~~~~~~~~~l~~~L~-~~~~~V~~~Aa~aL~~~~ 538 (975)
...++.|+.+||+|+|++ +.++||+||||++++|++ .+ .+..+.+++..+.+||. |+++|||+.||.||+.|+
T Consensus 456 ~~~mE~flv~hVfP~f~s----~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI 531 (1010)
T KOG1991|consen 456 KSQMEYFLVNHVFPEFQS----PYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFI 531 (1010)
T ss_pred HHHHHHHHHHHhhHhhcC----chhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHH
Confidence 356899999999999998 589999999999999995 45 46889999999999999 889999999999999999
Q ss_pred ccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHhC--
Q 002048 539 QVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG-VAEISNEVAAPCISGLTSILNEVCKN-- 615 (975)
Q Consensus 539 ~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~~l~~~~~~-- 615 (975)
.... ..++.++|+++++|+.|++++++++ ++-+..++..++. +++++.||+.+++++|...++++..+
T Consensus 532 ~~~~------~~~e~~~~hvp~~mq~lL~L~ne~E---nd~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~ 602 (1010)
T KOG1991|consen 532 SNQE------QADEKVSAHVPPIMQELLKLSNEVE---NDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSE 602 (1010)
T ss_pred hcch------hhhhhHhhhhhHHHHHHHHHHHhcc---hhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccC
Confidence 8763 3457799999999999999999984 5656666667788 99999999999999999988888764
Q ss_pred CCCC------chhHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhcccccchHHHHHHHHHHHHhcCCCCchhH
Q 002048 616 PKSP------IFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRPPLSSNY 689 (975)
Q Consensus 616 ~~~~------~~~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~~~~~~~~~~ 689 (975)
++++ ..+.+++++|++++.++ ++.|+.+..+++.++|++..+|+++..||+++++++...++..++. ++|.|
T Consensus 603 ~~~~~~ddk~iaA~GiL~Ti~Til~s~-e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~-Isp~m 680 (1010)
T KOG1991|consen 603 DEDESDDDKAIAASGILRTISTILLSL-ENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKE-ISPIM 680 (1010)
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcc-cCHHH
Confidence 1111 13579999999999999 8899999999999999999999999999999999999999999887 99999
Q ss_pred HHHHHhhcCccccccCCCccchHHHHHHHHccCccchhcc-CchHHHHHHHHHhhcCCCC---c-chHHHHHHHHHHhcc
Q 002048 690 MQIFNLLLSPDSWKRSSNVPALVRLLQAFLQKVPREIAQE-GKLREVLGIFNMLVLSPST---D-EQGFYVLNTIVESLE 764 (975)
Q Consensus 690 ~~lf~~l~~~~l~~~~~~l~~~~~~L~~~i~~~~~~~~~~-~~~~~il~i~~~ll~~~~~---~-~~a~~ll~~ii~~~~ 764 (975)
|++++.++....-...+|++.++..|.||+.+|...+..+ .|++.++.++++++.++.. | .+||+|++.+++++.
T Consensus 681 W~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~k 760 (1010)
T KOG1991|consen 681 WGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCK 760 (1010)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhc
Confidence 9999999984222234599999999999999999999987 4899999999999987654 2 459999999999996
Q ss_pred hhhHhhhHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHhChHHHHHHHhhhcchhHHHHHHHHhhcCcccccchhhH
Q 002048 765 YGVIAQFVPHIWGVLFTRLQNKRTVKFVKSLLIFMSLFLVKHGPENLVNTMNAVQSGIILVILEQIWIPNLKLITGAIEW 844 (975)
Q Consensus 765 ~~~~~~~l~~il~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 844 (975)
+.+++|+|.+++.++.|+....+....+.+++.++..+++|||..+++.|+.. |.... ++..|+.....+.+.|||
T Consensus 761 -g~~dq~iplf~~~a~~~l~~~~e~s~~~~~~leVvinalyynP~ltL~iLe~~--~~~~~-ff~~wf~~~~~~~~~HDk 836 (1010)
T KOG1991|consen 761 -GLLDQYIPLFLELALSRLTREVETSELRVMLLEVVINALYYNPKLTLGILENQ--GFLNN-FFTLWFQFINQFKKVHDK 836 (1010)
T ss_pred -CcHhhHhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCcHHHHHHHHHc--CCccc-HHHHHHHHHHHHHhhhhH
Confidence 58999999999999999999777788899999999999999999999999987 54443 457799888888889999
Q ss_pred HHHHHHHHHHhhcC-cccccHHHhhhHHHHHHHHHHHhcC-CCcccc------C--------C-C-------CCCccccc
Q 002048 845 KLTAVASTRLICES-PVLLDAAAVRHWGKMLDSIVTLLSR-PEEERV------E--------E-E-------PEMPDITE 900 (975)
Q Consensus 845 K~~~lal~~Ll~~~-~~~l~~~~~~~~~~il~~~~~ll~~-~~~~~~------~--------~-~-------~d~~d~~~ 900 (975)
|+|++||++|+..+ .+.++. ...++++.+++.++.+ |.+.+. + + + ++++++++
T Consensus 837 KlcvL~l~tli~l~~~~~~~~---e~l~~l~~~lv~L~~~Lp~ala~ra~~~ee~~~e~~~~~~~~~e~~~~d~dD~d~~ 913 (1010)
T KOG1991|consen 837 KLCVLGLLTLISLGQDPQLPS---EVLGQLGPALVELLLSLPEALAERAQVEEEDSEEGEEEDDDEEEDFIDDEDDIDED 913 (1010)
T ss_pred HHHHHHHHHHHhccccCCchH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhccCcccccccc
Confidence 99999999999994 444443 3456899999988876 655320 0 0 0 00111112
Q ss_pred ccCccccccccccc--------CCC-------C-----CCCCCCCCChHHHHHHHHHHhhhhCCCCchhhhhhcCCHHHH
Q 002048 901 NMGYTTAFVNLYNA--------GKK-------E-----EDPLKDIKDPKEFLVASLARISAVSPGRYPQIISENLEPANQ 960 (975)
Q Consensus 901 ~~~~~~~~~~l~~~--------~~~-------~-----~Dp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 960 (975)
+.+|.+.+...... ++. + +.|+|+| |++.+|+++++.++++++++| |.+.++|+|+++
T Consensus 914 d~d~~~~~~~~~~~~~~~~~~ddd~d~~~~~~~ed~~f~t~LD~V-D~f~~f~~~i~~lq~~d~~~y-q~l~~~L~~~q~ 991 (1010)
T KOG1991|consen 914 DQDYLDEYGELALEKEDSLDDDDDFDEDELDLEEDELFETPLDQV-DPFQLFKEAITNLQSSDAVRY-QKLISTLTPEQQ 991 (1010)
T ss_pred chhHHHhhccccccccccccccccccchhccccccccccCccccc-chHHHHHHHHHhhhccChHHH-HHHHhcCCHHHH
Confidence 22444443332111 000 1 2368889 999999999999999999999 899999999999
Q ss_pred HHHHHHHHhcC
Q 002048 961 SALLQLCSAFN 971 (975)
Q Consensus 961 ~~l~~~~~~~~ 971 (975)
+.||.+++.+.
T Consensus 992 ~~lq~I~~~~~ 1002 (1010)
T KOG1991|consen 992 DSLQTILTHAE 1002 (1010)
T ss_pred HHHHHHHHhHH
Confidence 99999998654
No 3
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-98 Score=802.39 Aligned_cols=910 Identities=18% Similarity=0.238 Sum_probs=746.6
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCCCCc
Q 002048 8 LQHLSQCFLHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPTL 87 (975)
Q Consensus 8 ~~~l~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~~~ 87 (975)
.++++||+.+|+++|+++|+.||++|++++++|||..+|++++.+++.+.++|++|+|||||.|.+.|+...+.+. .
T Consensus 2 ~~ellqcf~qTldada~~rt~AE~~Lk~leKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i---~ 78 (970)
T COG5656 2 REELLQCFLQTLDADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGI---K 78 (970)
T ss_pred hHHHHHHHHHHhccCcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCC---C
Confidence 4689999999999999999999999999999999999999999999899999999999999999999997544322 1
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCC-CCCCchHHHHHHHhcccccCCChhHHhHHHHHHHHH
Q 002048 88 APILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFP-KHWPTLLPELIANLKDAAQSNNYVSINGILGTANSI 166 (975)
Q Consensus 88 ~~i~~e~K~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P-~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i 166 (975)
+-..++.|+.++++++.....+|...|+.+-.++..|...||| +.|| +.|...+++.++ +.+.++.||.|++++
T Consensus 79 ~Dek~e~K~~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~----ea~~vy~gLlcl~el 153 (970)
T COG5656 79 ADEKSEAKKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSS----EANHVYTGLLCLEEL 153 (970)
T ss_pred CcccHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhccc----chhHHHHHHHHHHHH
Confidence 2356777777778888887788889999999999999999999 8899 999999999999 999999999999999
Q ss_pred HHhhhccccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhcccCCCchHHH-
Q 002048 167 FKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFE- 245 (975)
Q Consensus 167 ~k~~~~~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~~~lp~~~~- 245 (975)
||.|||++. +.+..+..++. .+++++.++++.+.+. + | ....+++++++|+|++.+++++|.++.
T Consensus 154 fkayRwk~n--deq~di~~li~----alfpile~~g~nl~s~---~-n----y~s~e~l~LILk~fKsvcy~~LP~~lsa 219 (970)
T COG5656 154 FKAYRWKYN--DEQVDILMLIT----ALFPILEKVGGNLESQ---G-N----YGSVETLMLILKSFKSVCYYSLPDFLSA 219 (970)
T ss_pred HHHHhhhcc--chHhhHHHHHH----HhhHHHHHHhhccccC---C-c----hhHHHHHHHHHHHHHHHHHhhCCHHHcc
Confidence 999999653 22334444444 6667777776655442 2 2 246789999999999999999999985
Q ss_pred -HhHHHHHHHHHHHhcccCCc--cc-CCCC-cCchHHHHHHHHHHHHHHHHHHhHHHH------------HhhHHHHHHH
Q 002048 246 -DHMREWMTEFKKYLTTNYPA--LE-STSD-GLGLVDGLRAAVCENISLYMKMNEEEF------------QGYLNDFALA 308 (975)
Q Consensus 246 -~~~~~~~~~~~~~l~~~~~~--l~-~~~~-~~~~~~~~k~~~~~~l~~~~~~~~~~f------------~~~~~~~~~~ 308 (975)
+.+..|.++++++++.+.|. +. |.+. ..++|.|||||++-+++|+++||.+.+ -..++.+++.
T Consensus 220 ~e~f~sw~ql~l~i~qkplp~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~t 299 (970)
T COG5656 220 IETFSSWFQLSLRILQKPLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILAT 299 (970)
T ss_pred chhhHHHHHHHHHHHcCCCCHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999998884 22 3322 567899999999999999999997422 2355667777
Q ss_pred HHHHHhccCCCC--cchHHHHHHHHHHHhh-chhhhhhcccCCCchhhHHHHhhcccCCCChhhHHHHhhCHHHHHhhcC
Q 002048 309 VWTLLGNVSQSS--SRDSLAVTAIKFLTNV-STSVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDM 385 (975)
Q Consensus 309 ~~~~l~~~~~~~--~~~~~~~~~l~fl~~~-~~~~~~~~~~~~~~l~~l~~~li~~~l~l~~~d~e~we~dp~efv~~~~ 385 (975)
+++.+..+++++ -.|+..+....|+..| ..+.++.++ +||+.-++..+|||.+|++++++|+||+||+||+|+..
T Consensus 300 ffkqie~wgqgqLWlsd~~LYfi~~Fve~cv~~d~tw~l~--ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~ 377 (970)
T COG5656 300 FFKQIEEWGQGQLWLSDIELYFIDFFVELCVDADQTWRLM--EPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYY 377 (970)
T ss_pred HHHHHHHhhcCCeecchHHHHHHHHHHHHHhhhHhhHhhh--ccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhc
Confidence 777777787765 5688889999999999 555444555 89999999999999999999999999999999999999
Q ss_pred C-CCcchhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCC--CCchhHHHHHHHHHHHHhhhcCCCccccCc
Q 002048 386 E-GSDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPV--ANWKDKDCAIYLVVSLATKKAGSTSISTDL 462 (975)
Q Consensus 386 d-~~d~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~--~~w~~keaal~~ig~ia~~~~~g~~~~~~~ 462 (975)
| .++.+|+..||..|+-.+..++++.+++.++.|+...+++++.+|. +|.+++|+|++++.++..-+.+ .+.. .
T Consensus 378 df~d~g~spdlaal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk-~sp~--a 454 (970)
T COG5656 378 DFFDNGLSPDLAALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITK-MSPA--A 454 (970)
T ss_pred chhcCCCChhHHHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhcc-CchH--H
Confidence 8 4467999999999999999999999999999999999998877764 4799999999999999874322 1111 1
Q ss_pred ccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCC-HhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccc
Q 002048 463 VDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIP-KIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVK 541 (975)
Q Consensus 463 ~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~-~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~ 541 (975)
--++.|+.+||+|.+++ ++++||+|||.++++|...++ +..+.++|+.+.+||+++++||+++||.|++.|+.+.
T Consensus 455 n~me~fiv~hv~P~f~s----~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~ 530 (970)
T COG5656 455 NVMEYFIVNHVIPAFRS----NYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE 530 (970)
T ss_pred HHHHHHHHHHhhHhhcC----cccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch
Confidence 23789999999999998 699999999999999976554 5789999999999999999999999999999998764
Q ss_pred cCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh-hccchhhhHHHHHHHHHHHH----HHHHhCC
Q 002048 542 DEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG-VAEISNEVAAPCISGLTSIL----NEVCKNP 616 (975)
Q Consensus 542 ~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~~l----~~~~~~~ 616 (975)
...+.+..++|++|++|+.+.+..+.+.... +....+. +.+++.||+++++..|+..+ +....|+
T Consensus 531 -------q~h~k~sahVp~tmekLLsLSn~feiD~LS~---vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens 600 (970)
T COG5656 531 -------QSHEKFSAHVPETMEKLLSLSNTFEIDPLSM---VMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENS 600 (970)
T ss_pred -------hhhHHHHhhhhHHHHHHHHhcccccchHHHH---HHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3567899999999999999998885433333 3345666 99999999999999998743 3344565
Q ss_pred CC-------Cc-hhHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhcccccchHHHHHHHHHHHHhcCCCCchh
Q 002048 617 KS-------PI-FNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRPPLSSN 688 (975)
Q Consensus 617 ~~-------~~-~~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~~~~~~~~~ 688 (975)
+| .. .+.++++++.+++-++ ++.|++...+++.++|++..++.++..||+.++++++...+..++. +.|.
T Consensus 601 ~d~~s~vDDKqmaasGiL~T~~smiLSl-en~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~ske-I~pi 678 (970)
T COG5656 601 SDTSSVVDDKQMAASGILRTIESMILSL-ENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKE-IEPI 678 (970)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHH-hhhh
Confidence 33 11 3578999999999998 8899999999999999999999999999999999999999888875 8999
Q ss_pred HHHHHHhhcCccccccC-CCccchHHHHHHHHccCccchhcc-CchHHHHHHHHHhhcCCCC---c-chHHHHHHHHHHh
Q 002048 689 YMQIFNLLLSPDSWKRS-SNVPALVRLLQAFLQKVPREIAQE-GKLREVLGIFNMLVLSPST---D-EQGFYVLNTIVES 762 (975)
Q Consensus 689 ~~~lf~~l~~~~l~~~~-~~l~~~~~~L~~~i~~~~~~~~~~-~~~~~il~i~~~ll~~~~~---~-~~a~~ll~~ii~~ 762 (975)
||.+|+.+.+...-..+ .|+.+....+++||.+|..+|.++ .|.+.++.|.++++.++.+ | ..+|++++.++++
T Consensus 679 mwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln 758 (970)
T COG5656 679 MWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILN 758 (970)
T ss_pred hhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHH
Confidence 99999998874321222 588999999999999999999987 4888888999999988765 3 5699999999999
Q ss_pred cchhhHhhhHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHhChHHHHHHHhhhcchhHHHHHHHHhhcCcccccchh
Q 002048 763 LEYGVIAQFVPHIWGVLFTRLQNKRTVKFVKSLLIFMSLFLVKHGPENLVNTMNAVQSGIILVILEQIWIPNLKLITGAI 842 (975)
Q Consensus 763 ~~~~~~~~~l~~il~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~w~~~~~~~~~~~ 842 (975)
+.++..++|+|-++.++...+......+....+.+.+.+.++.++|..++++|+.. |.... |+..|+.+.++|+++|
T Consensus 759 ~rd~Ll~qy~plfi~vags~l~~~dElg~~sv~aleliinnli~~P~eTLqiLe~q--g~l~~-FF~~wf~~ipkfkrvh 835 (970)
T COG5656 759 IRDELLSQYLPLFISVAGSGLKMIDELGPASVYALELIINNLILRPKETLQILEEQ--GYLQS-FFEKWFSQIPKFKRVH 835 (970)
T ss_pred ccchhHHhhhHHHHHHHhhhhhccccccchhhhHHHHHHHHHhcChHHHHHHHHHc--CcHHH-HHHHHHhcCcchhhhh
Confidence 98778899999888888867665544445556666677777778999999999976 76654 5577999999999999
Q ss_pred hHHHHHHHHHHHhhcCcccccHHHhhhHHHHHHHHHHHhcC-CCcccc--C--CCCCCc--cc-ccccCccccccccccc
Q 002048 843 EWKLTAVASTRLICESPVLLDAAAVRHWGKMLDSIVTLLSR-PEEERV--E--EEPEMP--DI-TENMGYTTAFVNLYNA 914 (975)
Q Consensus 843 ~~K~~~lal~~Ll~~~~~~l~~~~~~~~~~il~~~~~ll~~-~~~~~~--~--~~~d~~--d~-~~~~~~~~~~~~l~~~ 914 (975)
|||++++|+.+++..+..-. .....|+.+.+.++++..+ |++.+. + ++++.. |- .+.++..++|+.-.+
T Consensus 836 dkKLsvlaIltii~l~~v~~--~~e~lv~nLg~vlv~l~~sLPeAir~rake~d~e~f~e~dlt~ey~e~vD~~D~~et- 912 (970)
T COG5656 836 DKKLSVLAILTIIRLQEVGA--LPELLVHNLGEVLVALVTSLPEAIRLRAKEKDDEDFPEPDLTTEYDECVDASDISET- 912 (970)
T ss_pred hhHhHHHHHHHHHHhccccc--chhhhhhHHHHHHHHHHHhhHHHHHHHHhhcccCCCCCcccchhhhccccccchhhh-
Confidence 99999999999999883222 2245799999999999888 888743 1 111111 10 111222222221111
Q ss_pred CCCCCCC-----CCCCCChHHHHHHHHHHhhhhCCCCchhhhhhcCCHHHHHHHHHHHH
Q 002048 915 GKKEEDP-----LKDIKDPKEFLVASLARISAVSPGRYPQIISENLEPANQSALLQLCS 968 (975)
Q Consensus 915 ~~~~~Dp-----~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 968 (975)
...++|| +|++ |++.+|+++++.++...|+.+ +.+.++|++++|+.||.+++
T Consensus 913 fileEDplfeT~LDqv-dpf~~f~ef~~nLq~~s~~~y-ekIi~~Lt~s~qdslq~iln 969 (970)
T COG5656 913 FILEEDPLFETELDQV-DPFGYFSEFLSNLQPASGTYY-EKIISTLTDSQQDSLQTILN 969 (970)
T ss_pred hhhcccchhhhhhhhc-chHHHHHHHHHhCCCCCchhH-HHHHHhcCHHHHHHHHHHhc
Confidence 1245777 5778 999999999999999999999 88999999999999999875
No 4
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-85 Score=713.02 Aligned_cols=907 Identities=15% Similarity=0.202 Sum_probs=691.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcCCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCCCCcCCC
Q 002048 11 LSQCFLHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPTLAPI 90 (975)
Q Consensus 11 l~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~~~~~i 90 (975)
++|+|+++.|||+.++|.||++|++|+++|||+..|..|+.+.+.+.++||+|+|||||.|.+||++.... .+
T Consensus 2 vvq~Lq~Ats~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~~~~-------sl 74 (978)
T KOG1993|consen 2 VVQVLQQATSQDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRNTKM-------SL 74 (978)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHhhccCCcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcCCcc-------cC
Confidence 67899999999999999999999999999999999999999999999999999999999999999976543 79
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccCCChhHHhHHHHHHHHHHHhh
Q 002048 91 LDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSIFKKF 170 (975)
Q Consensus 91 ~~e~K~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i~k~~ 170 (975)
|+|+|+.||.+++....++.+++..|+|.++++|||.|||.+||+|+++|.+.+++....+|....++.|.++++|.|..
T Consensus 75 ~~EEK~~iR~~Ll~~~~E~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~L 154 (978)
T KOG1993|consen 75 PPEEKDFIRCNLLLHSDEENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKAL 154 (978)
T ss_pred CHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888899999999999999999999999999999999987644458889999999999999998
Q ss_pred hcc--ccchhhhhhHHHHHHHhhHHHHHHHHHHH-----HHHhccccCCCChHHHHHHHHHHHHHHHHhhhccc--CCCc
Q 002048 171 RYQ--FKTNDLLLDLKYCLDNFAAPLLEIFLKTA-----ALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNF--QELP 241 (975)
Q Consensus 171 ~~~--~~~~~~~~~l~~il~~~~~~l~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~--~~lp 241 (975)
.++ .+++..+. ..+|.+++++.-+. ..+.+. .+.++.+..-.+++..++.+|.++.+++ ++-|
T Consensus 155 at~RL~a~rk~F~-------el~~~I~~~l~~~l~s~lt~~~lq~-~ss~~ea~~LsalQ~s~~~lk~lRrlvv~G~~~P 226 (978)
T KOG1993|consen 155 ATKRLLADRKAFY-------ELAPEILTILAPILWSSLTMMFLQS-VSSIKEATLLSALQRSYLTLKVLRRLVVFGFQNP 226 (978)
T ss_pred HHhHHhhhhHHHH-------HHhHHHHHHHHHHHhcchHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 764 23333333 33334443322111 011111 0122334444567888899999998864 4555
Q ss_pred h--HHHHhHHHHHHHHHHHhcccCCcccCCCC-cCchHHHHHHHHHHHHHHHHHHhHHHHHh--hHHHHHHHHHHHHhcc
Q 002048 242 E--FFEDHMREWMTEFKKYLTTNYPALESTSD-GLGLVDGLRAAVCENISLYMKMNEEEFQG--YLNDFALAVWTLLGNV 316 (975)
Q Consensus 242 ~--~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~k~~~~~~l~~~~~~~~~~f~~--~~~~~~~~~~~~l~~~ 316 (975)
. .+.+.+..+.+...+.+...... +.+. ....++|..+..++.+..++++++-.|.. ..+..+.+..+.+..-
T Consensus 227 ~kse~~eRl~~F~e~~~~~~~~~~s~--~~~~vk~di~ek~~i~l~K~l~~l~~rhpfsF~~~~~~~~~l~f~~~yIf~~ 304 (978)
T KOG1993|consen 227 SKSEFFERLLQFLELHQRKLLSSLST--GTQSVKSDILEKFCIKLMKVLAFLFNRHPFSFSFYSPCPVKLEFSIDYIFDE 304 (978)
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccc--ccchhhhHHHHHHHHHHHHHHHHHhcCCCcccccccccceeeehhhhhhhcc
Confidence 3 23455666655544332222110 1111 12235566667778888888888877765 4555555555555432
Q ss_pred --------CCCCcchHHHHHHHHHHHhh-chhhh------------------------hhcccCCCchhhHHHHhhcccC
Q 002048 317 --------SQSSSRDSLAVTAIKFLTNV-STSVH------------------------HTLFAGEGVIPQICQNIVIPNV 363 (975)
Q Consensus 317 --------~~~~~~~~~~~~~l~fl~~~-~~~~~------------------------~~~~~~~~~l~~l~~~li~~~l 363 (975)
+....+++..++|+..++.+ ..+.+ .++| +.+.+..+|+.+|-.|+
T Consensus 305 ~~~l~~~~~~~~~fe~f~iq~l~mlK~vm~~~~~~~s~~~k~~~d~~~~~~~~a~~i~~sFl-~~~rIt~lcd~Lvt~Yf 383 (978)
T KOG1993|consen 305 YDFLGQISGHLSSFEEFFIQCLNMLKKVMIMKNYKFSLTIKEFCDTKDEHLETAQKIYNSFL-TDNRITNLCDLLVTHYF 383 (978)
T ss_pred cchhcccccccccHHHHHHHHHHHHHHHHHhhcccccccchhcccCccccHHHHHHHHHHhc-chHHHHHHHHHHHHHHH
Confidence 12234688999999999854 22211 2333 36789999999999999
Q ss_pred CCChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCC---CCchhHHH
Q 002048 364 RLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPV---ANWKDKDC 440 (975)
Q Consensus 364 ~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~---~~w~~kea 440 (975)
.++++|+|.|.+||++|+.++..+++.|+.|+||+.++.++.+.|++...|+++..+.+..+.-+..+. ++...|||
T Consensus 384 lLt~~eLEeW~~dPE~~~~Eq~~~dwey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDA 463 (978)
T KOG1993|consen 384 LLTEEELEEWTQDPEGWVLEQSGGDWEYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDA 463 (978)
T ss_pred hcCHHHHHHHhcChHHhhhhcccccceeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHH
Confidence 999999999999999999999888888999999999999999999999999999999776543211111 24789999
Q ss_pred HHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhc-cCCHhHHHhHHHHHHHhh
Q 002048 441 AIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRI-QIPKIHAFQFFPDLVRFL 519 (975)
Q Consensus 441 al~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~-~~~~~~~~~~~~~l~~~L 519 (975)
+|.++|..+..+++ .+||..||.+.++|++... ++...++|+|++|++|+|.+ +++.+....+|.+.++.|
T Consensus 464 iYaa~g~~a~~l~~-------~~dF~~Wl~~~llpEl~~~-~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL 535 (978)
T KOG1993|consen 464 IYAAFGLAAYELSN-------ILDFDKWLQEALLPELAND-HGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLL 535 (978)
T ss_pred HHHHHHHHHHHHHh-------cCCHHHHHHHhhCHHhhhc-ccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhc
Confidence 99999988776643 5899999999999999864 34689999999999999987 678899999999999999
Q ss_pred cCC-CchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhh-HHHHHHHHHHHh-hccchhh
Q 002048 520 GAE-SNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEEN-QYIMKCIMRVLG-VAEISNE 596 (975)
Q Consensus 520 ~~~-~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~-~~l~~~l~~vi~-~~~~i~p 596 (975)
+|. |.+||++|+.+++..++++ +|+++.+.||++.+...++++++.+++.+. .+++.++..++. .++.+.|
T Consensus 536 ~d~~D~vV~Ltt~~tlkl~vDD~------nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P 609 (978)
T KOG1993|consen 536 QDQNDLVVRLTTARTLKLVVDDW------NFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAP 609 (978)
T ss_pred CccccceeehHHHHHHHHhhhhc------cCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhH
Confidence 997 9999999999999999885 589999999999999999999988775543 488889988888 9999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhcccc---cchHHHHHH
Q 002048 597 VAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDVT---EFLPYAFQL 673 (975)
Q Consensus 597 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~~~---~~~~~~l~l 673 (975)
|+..+++.|..+|.++. +.+.++..++.++..++++++..+ ..+.+.++|+++........ .+.++++++
T Consensus 610 ~~~~ivq~lp~LWe~s~---~e~lLr~alL~~L~~lV~alg~qS----~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeL 682 (978)
T KOG1993|consen 610 YASTIVQYLPLLWEESE---EEPLLRCALLATLRNLVNALGAQS----FEFYPFLYPVIELSTDPSSPEHVYLLEDGMEL 682 (978)
T ss_pred HHHHHHHHHHHHHhhhc---cCcHHHHHHHHHHHHHHHHhccCC----ccchHHHHHHHHHhcCCCCCceeehhhhHHHH
Confidence 99999998888665443 456777889999999999995433 34556899999987665443 578999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHhhcCccccccCCCccchHHHHHHHHccCccchhccCchHHHHHHHHHhhcCCCCc--ch
Q 002048 674 LAQLIELNRPPLSSNYMQIFNLLLSPDSWKRSSNVPALVRLLQAFLQKVPREIAQEGKLREVLGIFNMLVLSPSTD--EQ 751 (975)
Q Consensus 674 l~~ll~~~~~~~~~~~~~lf~~l~~~~l~~~~~~l~~~~~~L~~~i~~~~~~~~~~~~~~~il~i~~~ll~~~~~~--~~ 751 (975)
|.+++.+++. ++|.+..+||++... +-.+.+++|.++.++++|+..+...|+++ |...++..+.+++.+-+.+ ..
T Consensus 683 W~~~L~n~~~-l~p~ll~L~p~l~~~-iE~ste~L~t~l~Ii~sYilLd~~~fl~~-y~~~i~k~~~~~l~dvr~egl~a 759 (978)
T KOG1993|consen 683 WLTTLMNSQK-LTPELLLLFPHLLYI-IEQSTENLPTVLMIISSYILLDNTVFLND-YAFGIFKKLNDLLDDVRNEGLQA 759 (978)
T ss_pred HHHHHhcccc-cCHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHhhccHHHHHH-HHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999987 999999999999873 33467899999999999999999999975 8999999999998765555 34
Q ss_pred HHHHHHHHHHhcchhhHhh-hHHHHHHHHHHHhhcCchhhHHH-HHHHHHHHHHHHhChHHHHHHHhhhc--chhHHHHH
Q 002048 752 GFYVLNTIVESLEYGVIAQ-FVPHIWGVLFTRLQNKRTVKFVK-SLLIFMSLFLVKHGPENLVNTMNAVQ--SGIILVIL 827 (975)
Q Consensus 752 a~~ll~~ii~~~~~~~~~~-~l~~il~~~l~~L~~~~~~~~~~-~~i~~~~~~~~~~~~~~~l~~L~~~~--~~~~~~~~ 827 (975)
.+++++.+++.-| .+++ +.++++..++..+......+++. ..+..++++. +.||+.++.++.... +.+..+ +
T Consensus 760 vLkiveili~t~~--il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~-l~n~~~~msvlqt~~~~d~~~~~-l 835 (978)
T KOG1993|consen 760 VLKIVEILIKTNP--ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARIS-LRNPSLFMSVLQTKNTYDILIAM-L 835 (978)
T ss_pred HHHHHHHHHhhhH--HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHH-hcChHHHHHHHHhhhhHHHHHHH-H
Confidence 5688888887643 4443 33566666666665444434433 3455666664 579999999998764 123333 5
Q ss_pred HHHhhcCcccccchhhHHHHHHHHHHHhhcCcccccHHHhhhHHHHHHHHHHHhcCCCccccCC--C-CCCcccccccCc
Q 002048 828 EQIWIPNLKLITGAIEWKLTAVASTRLICESPVLLDAAAVRHWGKMLDSIVTLLSRPEEERVEE--E-PEMPDITENMGY 904 (975)
Q Consensus 828 ~~~w~~~~~~~~~~~~~K~~~lal~~Ll~~~~~~l~~~~~~~~~~il~~~~~ll~~~~~~~~~~--~-~d~~d~~~~~~~ 904 (975)
...|+..++++.++.+||++++|+++||..+.+. ++..+..|++-.+++|.+-.++..++ + ...+|..+..-|
T Consensus 836 i~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~----ila~~~~I~nl~~e~L~eV~ed~~g~~~~~~~~d~~~e~~~~ 911 (978)
T KOG1993|consen 836 IGNWILLFDHINHPKDRKLNTLALSSLLRTNNPD----ILAVLDSIMNLWFEVLSEVMEDANGDATDYHLNDDLSEQGVY 911 (978)
T ss_pred HHHHHHHcccCCCHHHhhHHHHHHHHHhccCCcH----HHHHHhHHHHHHHHHHHHHhhhccCchHHHHhhhhhhccccC
Confidence 5789999999999999999999999999997764 24567788888888776522111121 0 000011111111
Q ss_pred cccc-ccc-cccCCCCCCCCCCCCChHHHHHHHHHHhhhhCCCCchhhhhhcCCHHHHHHHHHHHH
Q 002048 905 TTAF-VNL-YNAGKKEEDPLKDIKDPKEFLVASLARISAVSPGRYPQIISENLEPANQSALLQLCS 968 (975)
Q Consensus 905 ~~~~-~~l-~~~~~~~~Dp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 968 (975)
.+.. ... +.....-+||+|+| +.++|+.+.|..++.+.|...-+.+..+.+|+..+.||.+++
T Consensus 912 ~d~tteq~~r~k~l~lkDPVh~v-sl~~fi~~~l~~~q~~lG~q~yqq~l~tVnp~lleqlq~fl~ 976 (978)
T KOG1993|consen 912 EDETTEQDTRHKQLLLKDPVHSV-SLRSFIISVLMFLQDALGEQRYQQYLSTVNPELLEQLQMFLS 976 (978)
T ss_pred CchhhHHHHHHHHHhccCCcccc-cHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHHHHHHc
Confidence 1100 000 00012258999999 899999999999998888754377889999999999999876
No 5
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=100.00 E-value=7.5e-82 Score=698.84 Aligned_cols=917 Identities=23% Similarity=0.332 Sum_probs=714.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHhcCCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCCCCcCC
Q 002048 10 HLSQCFLHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPTLAP 89 (975)
Q Consensus 10 ~l~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~~~~~ 89 (975)
.++..+..+.|+|+..+|.||++|++|++++||...|..|..+.+.+.++||.|+|+|||+|++||+...++ .
T Consensus 5 ~vv~~~~~aqs~~p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~-------~ 77 (947)
T COG5657 5 PVVKQLDLAQSPDPPSVKCAEERLRQWEKQHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGN-------S 77 (947)
T ss_pred HHHHHHHhhcCCCCchHhhHHHHHHhhhccccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhccc-------C
Confidence 355667888999999999999999999999999999999999999999999999999999999999965543 5
Q ss_pred CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccCCChhHHhHHHHHHHHHHHh
Q 002048 90 ILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSIFKK 169 (975)
Q Consensus 90 i~~e~K~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i~k~ 169 (975)
+.++++..||..++.++.+.++.+..|+|+|++.||+.|||.+||+|+|+|.+.+++. |.....+.|+++|+|+|+
T Consensus 78 i~p~e~v~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~----D~~tn~~~L~~~h~Ifk~ 153 (947)
T COG5657 78 ILPDENVLIRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSEK----DMVTNENSLRVLHHIFKR 153 (947)
T ss_pred CCCccchHHHHHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHHHHhhhccc----chHHHHHHHHHHHHHHHH
Confidence 7778888999999999999999988899999999999999999999999999999998 999999999999999999
Q ss_pred hhccccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhcccCCCchHHHHhHH
Q 002048 170 FRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFEDHMR 249 (975)
Q Consensus 170 ~~~~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~~~lp~~~~~~~~ 249 (975)
||..+|+|+++.++.+++..+..+++......-... .+..+.....++.....+|.|+...+++.|+++++++.
T Consensus 154 ~r~l~Rsd~lf~ei~p~L~~~l~pfl~~~~~~~s~~------~~~~~~llslfqv~L~~~r~~~~~~~qdi~eFfEd~l~ 227 (947)
T COG5657 154 LRRLFRSDALFLEIAPVLLSILCPFLFSSAYFWSMS------ENLDESLLSLFQVCLKLIRRYYDLGFQDIPEFFEDNLD 227 (947)
T ss_pred HhhhhccHHHHHHHHHHHHHHHHHHHHhccchhHHh------hcchhhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Confidence 998899999999888887766655543322211111 11123333445555557788888999999999999999
Q ss_pred HHHHHHHHHhcccCCcccCCCCcCchHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHhccCCCCcchHHHHHH
Q 002048 250 EWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQGYLNDFALAVWTLLGNVSQSSSRDSLAVTA 329 (975)
Q Consensus 250 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 329 (975)
.||+.|.+++....|.+.++.-+...+.++|..+|+++..|..+|++.|.+++-.|++.+|+.++++...+.+|.++..+
T Consensus 228 ~~m~~F~klls~~~~~lq~~~le~~~~~~l~~~i~e~f~ly~t~yp~~it~li~dfv~~vw~~lttit~~~~~d~Lv~k~ 307 (947)
T COG5657 228 KFMEHFCKLLSYSNPVLQKDCLEDCVYFKLKGSICEIFNLYTTKYPEVITYLIYDFVEIVWNLLTTITRPYIRDYLVSKS 307 (947)
T ss_pred HHHHHHHHHHhhcchhhhhhhcccceeeeecccHHHHHHHHhhccHHHhhHHHHHHHHHHHHHHHhhcCccccchhhhhH
Confidence 99999999999877744321112356788999999999999999999999999999999999999988888899999999
Q ss_pred HHHHHhh-c--hhhhhhcccC--CCchhhHHHHhhcccCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHHH
Q 002048 330 IKFLTNV-S--TSVHHTLFAG--EGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGI 404 (975)
Q Consensus 330 l~fl~~~-~--~~~~~~~~~~--~~~l~~l~~~li~~~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L 404 (975)
+.++..+ + .+++..++.+ .+.+.++++.++.|+++++++|+|.|++||.||+|+...++-.+.+|.|+++.++.+
T Consensus 308 l~~l~~v~k~~irk~~e~l~n~~~~~~~~lvd~l~l~n~~lreed~E~~~ddp~eyire~s~~dye~~vr~~~~~~l~~~ 387 (947)
T COG5657 308 LTVLINVIKYPIRKTAEVLSNVSENLINNLVDLLILPNLILREEDLEEWEDDPLEYIREQSKTDYEVNVRPCIENELKDL 387 (947)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHhhhccccCcccccccccCHHHHHHhhccccchhhhhHHHHHHHHHH
Confidence 9999998 5 3455555533 457889999999999999999999999999999997665544567899999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHhccCC--CCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCC
Q 002048 405 ATHYRQHVMETVSVQIQNLLTSFAANP--VANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDV 482 (975)
Q Consensus 405 ~~~~~~~~~~~l~~~i~~~l~~~~~~~--~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~ 482 (975)
.+.+++-+.+.+.. .+.++.+.| .+..+++++++...| .|+++++..+++..|+.+.+.|++.+++.
T Consensus 388 f~~~~~i~~~~~~~----~ie~~~t~P~~~d~~~~~~a~~a~~g-------~g~~av~~~~~~v~~~~~~~~pd~~s~~~ 456 (947)
T COG5657 388 FDVFGRIAVGHELT----VIESEATTPNILDEARQLFAAYASFG-------LGVEAVNRMVDFVKFLGSIIYPDLLSPNE 456 (947)
T ss_pred HHHHhhHhHHHHHH----HHHHHhcCchHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHhcCccccCccc
Confidence 98888554444444 444555555 223455666655555 25555667899999999999999998643
Q ss_pred CCcchhHhhHHHHHHHhhccCCHhH--HHhH--HHHHHHhhcCC-CchHHHHHHHHHHHHHccccCCCccccccccccch
Q 002048 483 NAFPMLKAGALKFFTMFRIQIPKIH--AFQF--FPDLVRFLGAE-SNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPY 557 (975)
Q Consensus 483 ~~~~~Lr~ra~~~l~~f~~~~~~~~--~~~~--~~~l~~~L~~~-~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~ 557 (975)
-.|..+++|...++..++..+.... ...+ ++..+..+.+. +.++-++...|-...++.++ +......+.
T Consensus 457 ~~~~ri~~~~i~~i~~~r~~l~~~~~~~~~fl~~~~F~~yt~~~id~~~lLT~~~a~~t~~~~~n------~~~~~~~~~ 530 (947)
T COG5657 457 IIHLRILRSRIAYILTFRNQLDSSELSESKFLASQFFVNYTTACIDAVVLLTTREAYSTIFDDWN------FSVCSKIGL 530 (947)
T ss_pred CceeEEehhccchheechhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcc------ccccccccc
Confidence 3567777777777777666553322 1222 22233444432 44444455555555555442 333344455
Q ss_pred HHHHHHHHHHhcCCCCch-hhHHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHH
Q 002048 558 LSVLMTSLFNAFKFPESE-ENQYIMKCIMRVLG-VAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRR 635 (975)
Q Consensus 558 l~~il~~L~~ll~~~~~~-~~~~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~ 635 (975)
+++++-.+++++...++. +++++++++++++. -++.+.|...++++.|.++++.+++||++|.|.|+.++.++.++..
T Consensus 531 lenl~~lvl~~~as~~~~~e~~~ll~~i~rii~~~~~~i~pl~~~il~~L~~lv~~~~knps~p~~~h~~fe~I~al~~~ 610 (947)
T COG5657 531 LENLILLVLSLMASPSSLEEREFLLQLISRIIIIDPELIAPLGSEILQLLDNLVEINAKNPSNPQFAHYTFEDIGALVFL 610 (947)
T ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhCHHhhhhhHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHh
Confidence 677777777777777654 78899999999999 8999999889999999999999999999999999999999999988
Q ss_pred hhhcCcchHHHHHHhhHHHHHHHHhcccccchHHHHHHHHHHHHhcCCC-CchhHHHHHHhhcCccccccCCCccchHHH
Q 002048 636 ACQRDPSLISAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRPP-LSSNYMQIFNLLLSPDSWKRSSNVPALVRL 714 (975)
Q Consensus 636 ~~~~~~~~~~~l~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~~~~~-~~~~~~~lf~~l~~~~l~~~~~~l~~~~~~ 714 (975)
..+..+.....+...+.|.+..++..|..+++++++++++.+.+..... +|+-+..+-.+..++.+|...++++..+++
T Consensus 611 ~~~~~~~~ip~l~~~l~p~~~~l~~ed~~El~~~~lq~~s~l~e~f~~~~lp~v~~~l~q~~~~t~ll~~~~~I~~~~~L 690 (947)
T COG5657 611 KSGMCEITIPTLVLALVPEFPVLLSEDATELWSYVLQLLSILPEHFSGDVLPSVVKILRQPSLATELLPTKLEILKSYRL 690 (947)
T ss_pred hhcccccchHHHHHhhCccchhhhhhhHHHHHHHHHHHHhhcchhhcCCcCchHHHHHhcccCchHHHHHHHHHHHHHHH
Confidence 6333456788889999999988998999999999999999998887653 777777777777788889988999999999
Q ss_pred HHHHHccCccchhccCchHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcchh-hHhhhHHHHHHHHHHHhhcCchhhHHH
Q 002048 715 LQAFLQKVPREIAQEGKLREVLGIFNMLVLSPSTDEQGFYVLNTIVESLEYG-VIAQFVPHIWGVLFTRLQNKRTVKFVK 793 (975)
Q Consensus 715 L~~~i~~~~~~~~~~~~~~~il~i~~~ll~~~~~~~~a~~ll~~ii~~~~~~-~~~~~l~~il~~~l~~L~~~~~~~~~~ 793 (975)
+++.+..+++-|.+ ++.+.+++++++++.++..+..++.+ ..++..+..+ ...+++..|...+++|+.+++++.++.
T Consensus 691 l~~~~~~~~~if~~-s~~~~vL~i~~~ll~~e~~~~~~f~~-~~~v~~l~~~~i~~~~v~~i~~lll~rl~ns~~~r~v~ 768 (947)
T COG5657 691 LDNPILTTGYIFKS-SGFQPVLGILQYLLGSEPHDALCFLN-LTVVETLYLENIYEPYVNLIFVLLLSRLKNSKTERFVI 768 (947)
T ss_pred HHhhhhcccccccc-cchhhhHHHHHHHHhcchHHHHHHhh-HHHHHHhHHHHHHhhcHHHHHHHHHHHhhcccchHHHH
Confidence 99999999998887 68999999999999876555555444 5555555433 457899999999999999999999999
Q ss_pred HHHHHHHHHHHH----hChHHHHHHHhhhcchhHHHHHHHHhhcCcccccchhhHHHHHHHHHHHhhcCccc-cc-HHHh
Q 002048 794 SLLIFMSLFLVK----HGPENLVNTMNAVQSGIILVILEQIWIPNLKLITGAIEWKLTAVASTRLICESPVL-LD-AAAV 867 (975)
Q Consensus 794 ~~i~~~~~~~~~----~~~~~~l~~L~~~~~~~~~~~~~~~w~~~~~~~~~~~~~K~~~lal~~Ll~~~~~~-l~-~~~~ 867 (975)
..+.++++.+.. .+++.++...++.++++..+++. .|+=.++.+..+.+||+..+|+++++.+..+. ++ .++.
T Consensus 769 ~~i~~fs~v~~k~~~t~~~dnlI~ki~q~k~i~i~~l~g-~~Il~~~~i~~~~drKi~~ig~snllrt~~~~vls~~sv~ 847 (947)
T COG5657 769 KIIHVFSLVSFKDSLTVGCDNLISKINQTKNILIVQLYG-NWILGFDEIHDSKDRKIHLIGLSNLLRTLHPEVLSYVSVT 847 (947)
T ss_pred HhheeeEEechhhccccCChHHHHHHHHHHHHHHHHHHh-ceeeccchhccHHHHHHHHHhHHhhhhhcCchhhhHHHHH
Confidence 999999988765 67888999998888888877664 58877777999999999999999999655443 23 3445
Q ss_pred hhHHHHHHHHHHHhcCCCcccc-CCCCCCcccccccCcccccccccccCCCCCCCCCCCCChHHHHHHHHHHhhhhCCCC
Q 002048 868 RHWGKMLDSIVTLLSRPEEERV-EEEPEMPDITENMGYTTAFVNLYNAGKKEEDPLKDIKDPKEFLVASLARISAVSPGR 946 (975)
Q Consensus 868 ~~~~~il~~~~~ll~~~~~~~~-~~~~d~~d~~~~~~~~~~~~~l~~~~~~~~Dp~~~~~d~~~~~~~~l~~~~~~~~~~ 946 (975)
+.|-.++.++.+...++..... .||.+| ++.+.+.-.++|.++.....+ .||+++++ ...||-.+..++..+|.|.
T Consensus 848 ~li~~lLsei~et~~~da~i~~~~dd~~d-~~~~~~is~~~f~r~~~~~~k-~Dp~~~i~-~~~~~is~~m~~~~sn~g~ 924 (947)
T COG5657 848 NLIISLLSEIFETASGDAIIYELNDDYAD-DWFDGEISAEEFSRLAQLEFK-VDPVHDID-NTKYFISFFMEAMNSNLGN 924 (947)
T ss_pred HHHHHHHHHHHHhccCcceehhhccchhh-hccccCccHHHHHHHHHhhcc-CCCccccc-hHHHHHHHHHHHHHhcccc
Confidence 6777888888887766533221 111000 111111113567776654444 79999994 4455555556666677775
Q ss_pred chhhhhhcCCHHHHHHHHHHH
Q 002048 947 YPQIISENLEPANQSALLQLC 967 (975)
Q Consensus 947 ~~~~~~~~l~~~~~~~l~~~~ 967 (975)
- +.+..+|+.+.|..|+++.
T Consensus 925 ~-n~~~~~L~~~nq~~L~q~~ 944 (947)
T COG5657 925 E-NEIVFRLPTENQSLLEQLQ 944 (947)
T ss_pred h-hHHHHhcCCcCHHHHHHHh
Confidence 5 5788899999999998864
No 6
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=100.00 E-value=8.1e-72 Score=615.87 Aligned_cols=883 Identities=17% Similarity=0.233 Sum_probs=674.0
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCCCC
Q 002048 7 TLQHLSQCFLHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPT 86 (975)
Q Consensus 7 ~~~~l~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~~ 86 (975)
..+.|.++|.+++|||+++|.+||.+|++++..+||...|.+++.++..+.+.||.|.|+||++|++||++.++.++.
T Consensus 2 ~~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~-- 79 (1005)
T KOG2274|consen 2 VKQAIIELLSGSLSADQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRY-- 79 (1005)
T ss_pred cHHHHHHHHHhhcCCChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccC--
Confidence 457899999999999999999999999999999999999999999998899999999999999999999998877653
Q ss_pred cCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccCCChhHHhHHHHHHHHH
Q 002048 87 LAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSI 166 (975)
Q Consensus 87 ~~~i~~e~K~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i 166 (975)
+...+++.|..||+.+++++..+..+||+.++++|+.||+.|||++||+|++.+..+++++ |.+..||||++|.++
T Consensus 80 ~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~----n~n~i~~am~vL~el 155 (1005)
T KOG2274|consen 80 PLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSG----NENSIHGAMRVLAEL 155 (1005)
T ss_pred CCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhcc----chhhhhhHHHHHHHH
Confidence 2237899999999999999998888999999999999999999999999999999999997 999999999999999
Q ss_pred HHhhhccccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhcc----cC-C--
Q 002048 167 FKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLN----FQ-E-- 239 (975)
Q Consensus 167 ~k~~~~~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~----~~-~-- 239 (975)
.++.- +. ++..+.....+....+|.-. .. -++. ......+ +|.|+++. .+ +
T Consensus 156 ~~ev~----~e----e~~~~~~~~l~~m~~~f~~~-----~~---~s~~----~~~~aa~--~~lf~sc~~li~~~~e~~ 213 (1005)
T KOG2274|consen 156 SDEVD----VE----EMFFVGPVSLAEMYRIFALT-----IV---YSII----TRLGAAR--GKLFTSCLTLITNVEEVW 213 (1005)
T ss_pred HHHHH----HH----HHhcccccchhhhhhhhhhc-----cc---cchh----HHHHhhh--hHHHHHHHHHHhHHHHHH
Confidence 87652 11 33334444445555444321 11 0110 0111111 23333321 01 0
Q ss_pred ---CchHHHHhHHHHHHHHHHHhcccCCcccCCCCcCchHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHhcc
Q 002048 240 ---LPEFFEDHMREWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQGYLNDFALAVWTLLGNV 316 (975)
Q Consensus 240 ---lp~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~l~~~ 316 (975)
...++...+.+||..|...++.+.+ ..+.++..+.++++.+.++++....+++..++..+|+.+.+.
T Consensus 214 ~~~~~~~~s~~l~~~~~~l~h~l~~~~g----------~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~ 283 (1005)
T KOG2274|consen 214 AEHVKVFLSQILNQFMDILEHPLQRNDG----------SDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKI 283 (1005)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccc----------chHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHH
Confidence 1145567788888888887776422 237889999999999999999888899999999999988763
Q ss_pred CC------------C-----------CcchHHHHHHHHHHHhh-chhhhhhcccCCCchhhHHHHhhcccCCCChhhHHH
Q 002048 317 SQ------------S-----------SSRDSLAVTAIKFLTNV-STSVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEEL 372 (975)
Q Consensus 317 ~~------------~-----------~~~~~~~~~~l~fl~~~-~~~~~~~~~~~~~~l~~l~~~li~~~l~l~~~d~e~ 372 (975)
-. . ...+.++.+.++|++.+ .....++.+ +..+..++..++ -|++++++.+|.
T Consensus 284 ~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i~i~eF~s~i~t~~~~~~ti--~~~l~~lI~~~v-~y~Qlseeqie~ 360 (1005)
T KOG2274|consen 284 LAVYVRESVNGTEDSYDARYDSDPEEKSVETLVIQIVEFLSTIVTNRFLSKTI--KKNLPELIYQLV-AYLQLSEEQIEV 360 (1005)
T ss_pred HhhhhhhhccccccCcccccCCchhhhChHHhhhhHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHH-HHHHhhHHHHHH
Confidence 11 0 12367899999999998 666655555 457888887666 788999999999
Q ss_pred HhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh----ccCCCCCchhHHHHHHHHHHH
Q 002048 373 FEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSF----AANPVANWKDKDCAIYLVVSL 448 (975)
Q Consensus 373 we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~----~~~~~~~w~~keaal~~ig~i 448 (975)
|.+||++||.+|+++ ++.|.++.+++......|+.....++.+.....++.. ..+...+|+..++++++.+..
T Consensus 361 w~sD~~~fV~dEd~~---~~~~~~~rd~~~~v~~~f~~~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~ 437 (1005)
T KOG2274|consen 361 WTSDVNQFVADEDDG---YTARISVRDLLLEVITTFGNEGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESV 437 (1005)
T ss_pred HhccHHHhhccCCCC---chhhhhHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhc
Confidence 999999999988766 7888888888888998898877777777766655543 233335799999999998877
Q ss_pred HhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhcc--CCHhHHHhHHHHHHHhhcC-CCch
Q 002048 449 ATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQ--IPKIHAFQFFPDLVRFLGA-ESNV 525 (975)
Q Consensus 449 a~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~--~~~~~~~~~~~~l~~~L~~-~~~~ 525 (975)
. .|.. .+|.-.++...+...+... ..|+|-.||+|++++|++. ..++.+..++...++.++- ...+
T Consensus 438 ~----~~~~----~dd~l~~l~~~~~~~l~~~---e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~ 506 (1005)
T KOG2274|consen 438 R----IDDA----NDDKLIELTIMIDNGLVYQ---ESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPP 506 (1005)
T ss_pred c----cCcc----hHHHHHHHHHHHHhhcccc---cCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCc
Confidence 5 2211 2445555666666677663 5789999999999999986 5788899999999999885 4788
Q ss_pred HHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccchhhhHHHHHHHH
Q 002048 526 VHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLGVAEISNEVAAPCISGL 605 (975)
Q Consensus 526 V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~~~~~i~p~~~~l~~~L 605 (975)
+++.|++++..++. ...+.|+.|.+++.|..+....+.+.+..+|++++.++.++.+.. ...-+++
T Consensus 507 ~ki~a~~~~~~~~~-----------~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~---as~~skI 572 (1005)
T KOG2274|consen 507 VKISAVRAFCGYCK-----------VKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFA---ASMESKI 572 (1005)
T ss_pred hhHHHHHHHHhccC-----------ceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhh---hhhhcch
Confidence 99999988877663 558999999999999999998877778889999988877544432 2222333
Q ss_pred HHH-HHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhccc----ccchHHHHHHHHHHHHh
Q 002048 606 TSI-LNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDV----TEFLPYAFQLLAQLIEL 680 (975)
Q Consensus 606 ~~~-l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~~----~~~~~~~l~ll~~ll~~ 680 (975)
++. +....++.+||.......+++..++.. .++++.+.+.++|.+-.+++.+. .....-+++++++++++
T Consensus 573 ~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-----~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~ 647 (1005)
T KOG2274|consen 573 CPLTINLFLKYSEDPQVASLAQDLFEELLQI-----AANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRN 647 (1005)
T ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-----HHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhc
Confidence 332 223346777886666666777766665 36789999999999999998765 35667799999999999
Q ss_pred cCCCCchhHH-HHHHhhcCccccccC-CCccchHHHHHHHHccCccchhcc---Cc--hHHHHHHHHHhhcCCCCcchHH
Q 002048 681 NRPPLSSNYM-QIFNLLLSPDSWKRS-SNVPALVRLLQAFLQKVPREIAQE---GK--LREVLGIFNMLVLSPSTDEQGF 753 (975)
Q Consensus 681 ~~~~~~~~~~-~lf~~l~~~~l~~~~-~~l~~~~~~L~~~i~~~~~~~~~~---~~--~~~il~i~~~ll~~~~~~~~a~ 753 (975)
.|++++..+. ..||++.+..+..++ +.++.+.+||++||..+++++.+. ++ +..|+.+..++|+++.+|..|+
T Consensus 648 tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~ 727 (1005)
T KOG2274|consen 648 TPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAA 727 (1005)
T ss_pred CCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHH
Confidence 9999998887 899999998766543 589999999999999999999873 23 5599999999999887775544
Q ss_pred ---HHHHHHHHhcchhhHhhhHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHhChHHHHHHHhhhc---chhHHHHH
Q 002048 754 ---YVLNTIVESLEYGVIAQFVPHIWGVLFTRLQNKRTVKFVKSLLIFMSLFLVKHGPENLVNTMNAVQ---SGIILVIL 827 (975)
Q Consensus 754 ---~ll~~ii~~~~~~~~~~~l~~il~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~L~~~~---~~~~~~~~ 827 (975)
+++.+++.+++ ..+++-+..|+++++.||+.+++.++++++++.||++.+ .+++.++++|.+++ +.....++
T Consensus 728 ~VG~lV~tLit~a~-~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~-t~~~~~l~FL~Slp~~~g~~AlefV 805 (1005)
T KOG2274|consen 728 FVGPLVLTLITHAS-SELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVH-TDLDQLLNFLSSLPGPTGEPALEFV 805 (1005)
T ss_pred HHhHHHHHHHHHHH-HHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh-CCHHHHHHHHHhCCCCCCCcHHHHH
Confidence 77888888886 568999999999999999999999999999999999964 68999999999964 23556789
Q ss_pred HHHhhcCcccccchhhHHHHHHHHHHHhhcCcc----ccc------------------HH----HhhhHH--HHHHHHHH
Q 002048 828 EQIWIPNLKLITGAIEWKLTAVASTRLICESPV----LLD------------------AA----AVRHWG--KMLDSIVT 879 (975)
Q Consensus 828 ~~~w~~~~~~~~~~~~~K~~~lal~~Ll~~~~~----~l~------------------~~----~~~~~~--~il~~~~~ 879 (975)
++.|++++.-|.|.+++|+++.++|++|+..-. .+. .+ ..+.|. +++.+++|
T Consensus 806 MteW~srqhl~~g~ye~kv~i~alc~al~~~~~~ddkrLq~V~VkGelI~s~d~~I~TRSka~k~Perwt~IPl~vKIlk 885 (1005)
T KOG2274|consen 806 MTEWTSRQHLYFGEYEGKVSIKALCKALQHLISTDDKRLQKVRVKGELIYSMDEGIITRSKAKKNPERWTNIPLLVKILK 885 (1005)
T ss_pred HHHHHhhhhhhhhhhhchhhHHHHHHHHHhhhccCChhhceeeECCeecccCCCCeeehhhhccCchheeeccHHHHHHH
Confidence 999999999999999999999999998876432 111 00 012343 66788888
Q ss_pred HhcCCCcc-------c----cC---CCC-----CCcccccccCccc---ccccccc----cCCCC-------CCCCCCCC
Q 002048 880 LLSRPEEE-------R----VE---EEP-----EMPDITENMGYTT---AFVNLYN----AGKKE-------EDPLKDIK 926 (975)
Q Consensus 880 ll~~~~~~-------~----~~---~~~-----d~~d~~~~~~~~~---~~~~l~~----~~~~~-------~Dp~~~~~ 926 (975)
||.++..+ + .+ +|+ |.++++++++.+. -++-+.. +.+++ .||.+++
T Consensus 886 Lli~Els~~~e~~~~~qa~p~e~sqdd~nD~wdD~~~~~e~~d~l~g~~lsD~l~~d~D~~eDDe~dd~~~lkd~~yq~- 964 (1005)
T KOG2274|consen 886 LLISELSNVSEQNAARQAIPSEWSQDDGNDMWDDQPEEEEEEDGLAGQLLSDILETDVDEYEDDEEDDPDLLKDPLYQI- 964 (1005)
T ss_pred HHHHHHHHHhhcccccccCCchhhhhccccccccCCcCcccccchhhhhHHHHHhccccccccccccchhhccCcchhh-
Confidence 87542221 1 00 110 1111111111110 0111111 11111 3678888
Q ss_pred ChHHHHHHHHHHhhhhCCCCchhhhhhcCCHHHHHHHHHHH
Q 002048 927 DPKEFLVASLARISAVSPGRYPQIISENLEPANQSALLQLC 967 (975)
Q Consensus 927 d~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 967 (975)
|+..|+.+||+++.+++-..| ..+..+|+..++.+|+.++
T Consensus 965 dlq~yL~dFl~efa~~d~~~f-~~~~~~L~d~ER~VL~~i~ 1004 (1005)
T KOG2274|consen 965 DLQAYLTDFLKEFASQDRPCF-IMFYEHLTDNERRVLQTIL 1004 (1005)
T ss_pred hHHHHHHHHHHHHHhcCCcch-hHHHhccCHHHHHHHHHhh
Confidence 999999999999999877778 6888999999999998764
No 7
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=100.00 E-value=5.8e-66 Score=568.90 Aligned_cols=431 Identities=44% Similarity=0.810 Sum_probs=358.1
Q ss_pred HHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHH
Q 002048 535 EKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG-VAEISNEVAAPCISGLTSILNEVC 613 (975)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~~l~~~~ 613 (975)
++++..+++++.+.|+++++.|++++++++||.++...++.||||+|+|+||++. +++++.|++..++++|..++..++
T Consensus 1 EriL~~~~~~~~~~~~~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~ 80 (435)
T PF03378_consen 1 ERILFMKDPNGQPRFSKADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVS 80 (435)
T ss_dssp HHHHTHCC-SSSBSS-GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCeeECHHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777789999999999999999999999988777799999999999999 999999999999999999999999
Q ss_pred hCCCCCchhHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhcccccchHHHHHHHHHHHHhcC-CCCchhHHHH
Q 002048 614 KNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIELNR-PPLSSNYMQI 692 (975)
Q Consensus 614 ~~~~~~~~~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~~~-~~~~~~~~~l 692 (975)
+||+||.|+|++||+++.+|+.+|+.+|+.+..+|+.++|+|..||++|+.||+||+|||++.+++.++ +++++.|+++
T Consensus 81 kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L 160 (435)
T PF03378_consen 81 KNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQL 160 (435)
T ss_dssp TS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGG
T ss_pred hCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHH
Confidence 999999999999999999999998888889999999999999999999999999999999999999998 5699999999
Q ss_pred HHhhcCccccccCCCccchHHHHHHHHccCccchhccCchHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcchhhHhhhH
Q 002048 693 FNLLLSPDSWKRSSNVPALVRLLQAFLQKVPREIAQEGKLREVLGIFNMLVLSPSTDEQGFYVLNTIVESLEYGVIAQFV 772 (975)
Q Consensus 693 f~~l~~~~l~~~~~~l~~~~~~L~~~i~~~~~~~~~~~~~~~il~i~~~ll~~~~~~~~a~~ll~~ii~~~~~~~~~~~l 772 (975)
||+++.|.+|+..||+|+++++|.+|+.+++..+.++++++.++++|+++++++.+|.+||+|+++|+.++|.+.+++|+
T Consensus 161 ~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~gF~LL~~iv~~~p~~~l~~yl 240 (435)
T PF03378_consen 161 FPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKANDHYGFDLLESIVENLPPEALEPYL 240 (435)
T ss_dssp HHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHS-HHHHGGGH
T ss_pred HHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHCCHHHHHHHH
Confidence 99999999999999999999999999999999998878999999999999999999999999999999999988999999
Q ss_pred HHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHhChHHHHHHHhhhcchhHHHHHHHHhhcCcccccchhhHHHHHHHHH
Q 002048 773 PHIWGVLFTRLQNKRTVKFVKSLLIFMSLFLVKHGPENLVNTMNAVQSGIILVILEQIWIPNLKLITGAIEWKLTAVAST 852 (975)
Q Consensus 773 ~~il~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~w~~~~~~~~~~~~~K~~~lal~ 852 (975)
+.|+..+++||+++||++|++.++++++++++.+||+.+++.++++|+|+|.+++.+.|+++.+++.|..|||++++|++
T Consensus 241 ~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGlt 320 (435)
T PF03378_consen 241 KQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLT 320 (435)
T ss_dssp HHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccHHHhhhHHHHHHHHHHHhcCCCccccCCCCCCc--ccccccCcccccccccccCCCCCCCCCCCCChHH
Q 002048 853 RLICESPVLLDAAAVRHWGKMLDSIVTLLSRPEEERVEEEPEMP--DITENMGYTTAFVNLYNAGKKEEDPLKDIKDPKE 930 (975)
Q Consensus 853 ~Ll~~~~~~l~~~~~~~~~~il~~~~~ll~~~~~~~~~~~~d~~--d~~~~~~~~~~~~~l~~~~~~~~Dp~~~~~d~~~ 930 (975)
+||+.++..... +.+.|+.++..+++++++|......+++|.. +|.++.||+.+|++|.+++..+.||+.++.|++.
T Consensus 321 kLL~es~~~~~~-~~~~w~~ll~~Ll~ll~~p~~~~~~~~e~~~~~~d~~~~gy~~~fs~L~~a~~~~~Dp~~~i~d~~~ 399 (435)
T PF03378_consen 321 KLLCESPAFLSE-YSQLWPPLLEALLKLLERPPEASAADEEDFIDEEDVEDIGYQVSFSKLAFAGKKPRDPLPEIPDPKQ 399 (435)
T ss_dssp HHHHSSTTHHHH--CHHHHHHHHHHHHHHHTTSTT-S----S-----------TT-GGG--GGG------S-TTTTCHHH
T ss_pred HHHhccHhhhhH-HHHHHHHHHHHHHHHHcCCccccccccccccccccchhcccchhhHHHHhCCCCCCCCCCCCCCHHH
Confidence 999987655433 4679999999999999997654332222211 2223358999999999998889999999999999
Q ss_pred HHHHHHHHhhhhCCCCchhhhhhcCCHHHHHHHHHH
Q 002048 931 FLVASLARISAVSPGRYPQIISENLEPANQSALLQL 966 (975)
Q Consensus 931 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 966 (975)
|+++.|+++.+++||++.+.+.++|+++.|+.|++|
T Consensus 400 ~~~~~L~~~~~~~~G~~~~~i~~~l~~~~~~~L~~y 435 (435)
T PF03378_consen 400 YLAQSLSKLSQAHPGKIPPLIQQQLPPEAQQALQQY 435 (435)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHGGGS-HHHHHHHHH-
T ss_pred HHHHHHHHHHHhCCCchHHHHHhhCCHHHHHHhccC
Confidence 999999999999999998888888999999999986
No 8
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=100.00 E-value=8.3e-65 Score=548.82 Aligned_cols=365 Identities=48% Similarity=0.835 Sum_probs=317.5
Q ss_pred HHHhhhccccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhcccCCCchHHH
Q 002048 166 IFKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFE 245 (975)
Q Consensus 166 i~k~~~~~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~~~lp~~~~ 245 (975)
|+|+||+.++||+++.||+++++.+.++++.+|..+.+.+.++ ..+.+..+.+++++++++|+|++++++|+|++|+
T Consensus 1 ifkr~r~~~~s~~l~~eik~vl~~~~~pll~l~~~~~~~i~~~---~~~~~~l~~~~~~l~lilKiF~sL~~~DLPe~fe 77 (370)
T PF08506_consen 1 IFKRYRYQFRSDELYTEIKYVLDKFAEPLLELFKQTDQLIEAN---ANNAASLKVLFEMLKLILKIFYSLNCQDLPEFFE 77 (370)
T ss_dssp HHGGGTTS---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TT-HHHHHHHHHHHHHHHHHHHHHHSSS--HHHH
T ss_pred CccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHHHccCcCcHHHH
Confidence 6899999999999999999999999999999999999888775 5667778889999999999999999999999999
Q ss_pred HhHHHHHHHHHHHhcccCCccc-CCCCcCchHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHhccCCCCcchH
Q 002048 246 DHMREWMTEFKKYLTTNYPALE-STSDGLGLVDGLRAAVCENISLYMKMNEEEFQGYLNDFALAVWTLLGNVSQSSSRDS 324 (975)
Q Consensus 246 ~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~ 324 (975)
|++..||+.|+++|..+.|.+. +++++.++++|+|+|+|+++++|.+||.+.|.+|++.|++.+|+++.+++..+++|.
T Consensus 78 d~l~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~ 157 (370)
T PF08506_consen 78 DNLSEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDI 157 (370)
T ss_dssp HTHHHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHH
T ss_pred HHHHHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccH
Confidence 9999999999999999988765 344478899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-chhhhhhcccCCCchhhHHHHhhcccCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHH
Q 002048 325 LAVTAIKFLTNV-STSVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKG 403 (975)
Q Consensus 325 ~~~~~l~fl~~~-~~~~~~~~~~~~~~l~~l~~~li~~~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~ 403 (975)
++..+++||+++ +...|+.+|.+++++.+||+++|+|+|+++++|+|+|||||.||||+++|++|.+|||+||.+|+++
T Consensus 158 lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~ 237 (370)
T PF08506_consen 158 LVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRS 237 (370)
T ss_dssp HHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHH
Confidence 999999999999 8888888997788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhh---cCCCccccCcccHHHHHHHhcccccCCC
Q 002048 404 IATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKK---AGSTSISTDLVDVQSFFTSVIVPELQSP 480 (975)
Q Consensus 404 L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~---~~g~~~~~~~~~~~~~l~~~v~p~l~~~ 480 (975)
|+++|++.+++++++++++++++|+++|+.||+.||+|++++|+++.++ ..|++++++.+|+++||.++|+|+|+ +
T Consensus 238 L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~ 316 (370)
T PF08506_consen 238 LCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-P 316 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-c
Confidence 9999999999999999999999999999999999999999999999887 67888888999999999999999999 5
Q ss_pred CCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHH
Q 002048 481 DVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCI 534 (975)
Q Consensus 481 ~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL 534 (975)
+.+.+|+||+||||++..|+++++++.+..++|.++++|++++.+|+.|||.|+
T Consensus 317 ~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 317 DVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 556899999999999999999999999999999999999999999999999986
No 9
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-55 Score=468.01 Aligned_cols=819 Identities=16% Similarity=0.212 Sum_probs=600.8
Q ss_pred CCCCh--hhHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCChHHHHHHHHHhc-CcChHHHHHHHHHHHhhhhcccCC
Q 002048 1 MEWNQ--ETLQHLSQCFLHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQ-TIDEQIRHAAAVNFKNHLRFRWAP 77 (975)
Q Consensus 1 m~~~~--~~~~~l~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~-~~~~~vRq~Aai~lKn~I~~~W~~ 77 (975)
|.|.| ...+++.++|+++.|||+++|+.+..+|.++...|+|..+|..|+.+. +.+.++|.+|++.|||.|+-+|.
T Consensus 3 ~~w~p~e~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~- 81 (885)
T KOG2023|consen 3 MTWQPDEQGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYN- 81 (885)
T ss_pred CCCcccHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhcccccccc-
Confidence 55655 357899999999999999999999999999999999999999998864 46789999999999999999998
Q ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccCCChhHHh
Q 002048 78 ASDRNSGPTLAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSIN 157 (975)
Q Consensus 78 ~~~~~~~~~~~~i~~e~K~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~~~~~ 157 (975)
.++.+.+.+||+.++.++..+++.||...+.+|++|+...+-..||+++|.|++++.++ |.+...
T Consensus 82 -----------~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~----d~n~~E 146 (885)
T KOG2023|consen 82 -----------SIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSP----DYNTCE 146 (885)
T ss_pred -----------CCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCC----cccccc
Confidence 57789999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHhhhccccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhccc
Q 002048 158 GILGTANSIFKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNF 237 (975)
Q Consensus 158 ~~L~~l~~i~k~~~~~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~ 237 (975)
||+..|..||++-...+.++-.-++ ++.+.|.++.++.+.. +..+..++.|++ ..+
T Consensus 147 gA~~AL~KIcEDsa~~lds~~~~rp----l~~mipkfl~f~~h~s------------pkiRs~A~~cvN-------q~i- 202 (885)
T KOG2023|consen 147 GAFGALQKICEDSAQFLDSDVLTRP----LNIMIPKFLQFFKHPS------------PKIRSHAVGCVN-------QFI- 202 (885)
T ss_pred hhHHHHHHHHhhhHHHHhhhcccCc----hHHhHHHHHHHHhCCC------------hhHHHHHHhhhh-------hee-
Confidence 9999999999975443333322223 3445556666665421 222333433332 111
Q ss_pred CCCchHHHHhHHHHHHHHHHHhcccCCcccCCCCcCchHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHhccC
Q 002048 238 QELPEFFEDHMREWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQGYLNDFALAVWTLLGNVS 317 (975)
Q Consensus 238 ~~lp~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~ 317 (975)
..-+..+..++..+.+.+..+-+ |++ ..+||.+|+.+..+.+..++...||+..+++.++.....
T Consensus 203 ~~~~qal~~~iD~Fle~lFalan-------D~~------~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd-- 267 (885)
T KOG2023|consen 203 IIQTQALYVHIDKFLEILFALAN-------DED------PEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQD-- 267 (885)
T ss_pred ecCcHHHHHHHHHHHHHHHHHcc-------CCC------HHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccC--
Confidence 11235666778888776665422 222 479999999999999999999999999988888765322
Q ss_pred CCCcchHHHHHHHHHHHhh-chhhhhhcccCCCchhhHHHHhhcccCCCChhhHHHHhhC--------HHHHHhh-----
Q 002048 318 QSSSRDSLAVTAIKFLTNV-STSVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMN--------YVEFIRR----- 383 (975)
Q Consensus 318 ~~~~~~~~~~~~l~fl~~~-~~~~~~~~~~~~~~l~~l~~~li~~~l~l~~~d~e~we~d--------p~efv~~----- 383 (975)
..+.++..+.|||.+. ..+..+..+ .|++..++..+ +..|.++++|+-+.+++ -+|-|+-
T Consensus 268 ---~dE~VALEACEFwla~aeqpi~~~~L--~p~l~kliPvL-l~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhks 341 (885)
T KOG2023|consen 268 ---VDENVALEACEFWLALAEQPICKEVL--QPYLDKLIPVL-LSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKS 341 (885)
T ss_pred ---cchhHHHHHHHHHHHHhcCcCcHHHH--HHHHHHHHHHH-HccCccccccHHHhcCccccccCCchhhhccchhhhc
Confidence 2467999999999999 777888888 89999999854 59999999998888722 2233321
Q ss_pred -----------cC------CCCc---chhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHH
Q 002048 384 -----------DM------EGSD---VDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIY 443 (975)
Q Consensus 384 -----------~~------d~~d---~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~ 443 (975)
++ |++| .|+.|.|+...|+.|+..|++.+++.++.++.+.|. +++|+.|||++.
T Consensus 342 k~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~------~~~W~vrEagvL 415 (885)
T KOG2023|consen 342 KEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLS------SEEWKVREAGVL 415 (885)
T ss_pred hhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcC------cchhhhhhhhHH
Confidence 00 1111 378999999999999999999999999999999886 588999999999
Q ss_pred HHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccC----CHhHHHhHHHHHHHhh
Q 002048 444 LVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQI----PKIHAFQFFPDLVRFL 519 (975)
Q Consensus 444 ~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~----~~~~~~~~~~~l~~~L 519 (975)
++|++|++|..|+.+. + +-+..++++.|.+ ..|.+|+-.||.+++|+.++ +.+++..++..+++.+
T Consensus 416 AlGAIAEGcM~g~~p~--L----peLip~l~~~L~D----KkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~l 485 (885)
T KOG2023|consen 416 ALGAIAEGCMQGFVPH--L----PELIPFLLSLLDD----KKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRL 485 (885)
T ss_pred HHHHHHHHHhhhcccc--h----HHHHHHHHHHhcc----CccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHH
Confidence 9999999998887421 1 1233444555665 68999999999999999864 2478899999999999
Q ss_pred cCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh-hccchh--h
Q 002048 520 GAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG-VAEISN--E 596 (975)
Q Consensus 520 ~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~-~~~~i~--p 596 (975)
-|++.-|+..||.|+..+.+.- .+.+.||+..|++.|...+..+.+...-.+.++|.++.. ++..+. .
T Consensus 486 lD~NK~VQEAAcsAfAtleE~A---------~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~ 556 (885)
T KOG2023|consen 486 LDSNKKVQEAACSAFATLEEEA---------GEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPA 556 (885)
T ss_pred hcccHHHHHHHHHHHHHHHHhc---------cchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHH
Confidence 9999999999999999877653 568999999999999999988865555566788888888 766653 3
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhc------c------cc
Q 002048 597 VAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQN------D------VT 664 (975)
Q Consensus 597 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~------~------~~ 664 (975)
|..-++..|++.|..++ +.+... .-++||++.+..+++..----.....+..+-+++++++. + ..
T Consensus 557 YiqiLmPPLi~KW~~ls-d~DKdL--fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdk 633 (885)
T KOG2023|consen 557 YIQILMPPLIEKWELLS-DSDKDL--FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDK 633 (885)
T ss_pred HHHHhccHHHHHHHhcC-cccchH--HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCc
Confidence 44556666666554443 322222 379999999999984322222334445555566654332 1 12
Q ss_pred cchHHHHHHHHHHHHhcCCCCchhHH--HHHHhhcCccccccCCCccchHHHHHHHHccCccchhccCchHHHHHHHHHh
Q 002048 665 EFLPYAFQLLAQLIELNRPPLSSNYM--QIFNLLLSPDSWKRSSNVPALVRLLQAFLQKVPREIAQEGKLREVLGIFNML 742 (975)
Q Consensus 665 ~~~~~~l~ll~~ll~~~~~~~~~~~~--~lf~~l~~~~l~~~~~~l~~~~~~L~~~i~~~~~~~~~~~~~~~il~i~~~l 742 (975)
||+--++++++.+.+...+.+.+-+. .+...++....-.-.+.-++++.+|..+.+..++++. ++....+-++..-
T Consensus 634 dfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~--p~~~~fl~~lg~N 711 (885)
T KOG2023|consen 634 DFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVI--PNLADFLPILGAN 711 (885)
T ss_pred ceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhcc--chHHHHHHHHhhc
Confidence 67777999999999987654433332 2333333321112345778888888888888877776 3567777666644
Q ss_pred hcCCCCc--chHHHHHHHHHHhcchhhHhhhHHHHHHHHHHHhhcCchhhH-HHHHHHHHHHHHHHhChHHHHHHHhhhc
Q 002048 743 VLSPSTD--EQGFYVLNTIVESLEYGVIAQFVPHIWGVLFTRLQNKRTVKF-VKSLLIFMSLFLVKHGPENLVNTMNAVQ 819 (975)
Q Consensus 743 l~~~~~~--~~a~~ll~~ii~~~~~~~~~~~l~~il~~~l~~L~~~~~~~~-~~~~i~~~~~~~~~~~~~~~l~~L~~~~ 819 (975)
+++.... ..|+.-++.+..+++ ....+|++.++..++.-+++..+++. ..+..+.+.+++ ++.|+.+--.
T Consensus 712 l~~~~isv~nNA~WAiGeia~k~g-~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg-~~~Pe~vAp~----- 784 (885)
T KOG2023|consen 712 LNPENISVCNNAIWAIGEIALKMG-LKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLG-YICPEEVAPH----- 784 (885)
T ss_pred CChhhchHHHHHHHHHHHHHHHhc-hhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhh-ccCHHhcchh-----
Confidence 4443322 458888999999986 45679999999999998887776542 333444444543 2345543222
Q ss_pred chhHHHHHHHHhhcCcccccchhhHHHHHHHHHHHhhcCcccccHHHhhhHHHHHHHHHHHhcCCCccccCCCCCCcccc
Q 002048 820 SGIILVILEQIWIPNLKLITGAIEWKLTAVASTRLICESPVLLDAAAVRHWGKMLDSIVTLLSRPEEERVEEEPEMPDIT 899 (975)
Q Consensus 820 ~~~~~~~~~~~w~~~~~~~~~~~~~K~~~lal~~Ll~~~~~~l~~~~~~~~~~il~~~~~ll~~~~~~~~~~~~d~~d~~ 899 (975)
..-|.+-||..++++....+|--.+.|+|+++..++.-+. ..+.-+..++... .+
T Consensus 785 ----l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv----~~~~f~c~aiAsw-~n---------------- 839 (885)
T KOG2023|consen 785 ----LDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVV----SSFIFICDAIASW-SN---------------- 839 (885)
T ss_pred ----HHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhh----hhhHHHHHHHhcc-cC----------------
Confidence 2245678999999999999999999999999999875432 1222222222221 00
Q ss_pred cccCcccccccccccCCCCCCCCCCCCChHHHHHHHHHHhhhhCCC-CchhhhhhcCCHHHHHHHHHHH
Q 002048 900 ENMGYTTAFVNLYNAGKKEEDPLKDIKDPKEFLVASLARISAVSPG-RYPQIISENLEPANQSALLQLC 967 (975)
Q Consensus 900 ~~~~~~~~~~~l~~~~~~~~Dp~~~~~d~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~~ 967 (975)
|- .+++.-|...|.+.+++.+. ++ +.....++|..++.|+...
T Consensus 840 ---------------------p~---~~l~~~f~kiL~g~k~qvg~~nW-~~~~~qf~P~~~erl~a~y 883 (885)
T KOG2023|consen 840 ---------------------PE---DDLRDEFYKILQGFKNQVGKINW-QRFSEQFPPPLKERLQAFY 883 (885)
T ss_pred ---------------------hH---HHHHHHHHHHHHHHHHHhhhhhH-HHHhhcCChhHHHHHHHHh
Confidence 00 14677788888888876654 56 5677889999999887653
No 10
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-45 Score=421.65 Aligned_cols=668 Identities=17% Similarity=0.240 Sum_probs=464.0
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCCCC
Q 002048 7 TLQHLSQCFLHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPT 86 (975)
Q Consensus 7 ~~~~l~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~~ 86 (975)
+.+.+.|++++.+|||+.+|++||+.|+....++.....|.+++.. +.++++||+|+|.+|+.+.++|+
T Consensus 2 ~~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~-~~~p~~Rq~aaVl~Rkl~~~~w~---------- 70 (1075)
T KOG2171|consen 2 DSAPLEQLLQQLLSPDNEVRRQAEEALETLAKTEPLLPALAHILAT-SADPQVRQLAAVLLRKLLTKHWS---------- 70 (1075)
T ss_pred chhHHHHHHHHhcCCCchHHHHHHHHHHHhhcccchHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHhh----------
Confidence 4567999999999999999999999999777776677777777776 56899999999999999999998
Q ss_pred cCCCCHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccCCChhHHhHHHHHHHH
Q 002048 87 LAPILDAEKDQIKSLIVGLMLTST-PRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANS 165 (975)
Q Consensus 87 ~~~i~~e~K~~Ir~~ll~~l~~~~-~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~ 165 (975)
.|++|.|+.||+.|+.++.+++ +.||+.+|.+|+.||+.+.|++||+|++.|.++.+|+ |+..+..|+++|..
T Consensus 71 --~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~----~~~~rE~al~il~s 144 (1075)
T KOG2171|consen 71 --RLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSP----NPSLRESALLILSS 144 (1075)
T ss_pred --cCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCC----CcchhHHHHHHHHh
Confidence 6999999999999999999887 5799999999999999999999999999999999999 99999999999999
Q ss_pred HHHhhhccccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhcccCCCchHHH
Q 002048 166 IFKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFE 245 (975)
Q Consensus 166 i~k~~~~~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~~~lp~~~~ 245 (975)
+...+.. .. ..+.+.+.++|.+..+ .. ++. .+..++..+.-.... .+--....
T Consensus 145 ~~~~~~~-----~~--------~~~~~~l~~lf~q~~~---d~----s~~-vr~~a~rA~~a~~~~------~~~~~~~~ 197 (1075)
T KOG2171|consen 145 LPETFGN-----TL--------QPHLDDLLRLFSQTMT---DP----SSP-VRVAAVRALGAFAEY------LENNKSEV 197 (1075)
T ss_pred hhhhhcc-----cc--------chhHHHHHHHHHHhcc---CC----cch-HHHHHHHHHHHHHHH------hccchHHH
Confidence 9875521 11 1233355666655442 21 111 222222222111111 11001122
Q ss_pred HhHHHHHHHHHHHhcccCCcccCCCCcCchHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHhccCCCCcchHH
Q 002048 246 DHMREWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQGYLNDFALAVWTLLGNVSQSSSRDSL 325 (975)
Q Consensus 246 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~ 325 (975)
+.+...++.++.+++...+ ++| ...-+.+++.+..+.+..++.+.+++..+++....+..+.. ..+..
T Consensus 198 ~~~~~llP~~l~vl~~~i~---~~d------~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~---l~~~~ 265 (1075)
T KOG2171|consen 198 DKFRDLLPSLLNVLQEVIQ---DGD------DDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKE---LENSI 265 (1075)
T ss_pred HHHHHHhHHHHHHhHhhhh---ccc------hHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccc---ccHHH
Confidence 3444445555555443222 222 23345899999999999999999999888888888765432 34788
Q ss_pred HHHHHHHHHhh-ch--hhhhhcccCCCchhhHHHHhhcccCCCChhhHHHHhhCHHHHHhhc-CCCCcchhhhHHHHHHH
Q 002048 326 AVTAIKFLTNV-ST--SVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRD-MEGSDVDTRRRIACELL 401 (975)
Q Consensus 326 ~~~~l~fl~~~-~~--~~~~~~~~~~~~l~~l~~~li~~~l~l~~~d~e~we~dp~efv~~~-~d~~d~~s~R~~A~~ll 401 (975)
++.+++|+.++ +. ...|+. .+....++.. ++..|+=-++| +||...| .|+++..++.+.|...+
T Consensus 266 R~~ALe~ivs~~e~Ap~~~k~~---~~~~~~lv~~-~l~~mte~~~D--------~ew~~~d~~ded~~~~~~~~A~~~l 333 (1075)
T KOG2171|consen 266 RHLALEFLVSLSEYAPAMCKKL---ALLGHTLVPV-LLAMMTEEEDD--------DEWSNEDDLDEDDEETPYRAAEQAL 333 (1075)
T ss_pred HHHHHHHHHHHHHhhHHHhhhc---hhhhccHHHH-HHHhcCCcccc--------hhhccccccccccccCcHHHHHHHH
Confidence 99999999988 32 233333 4556666653 33444422222 4444433 34455688999999999
Q ss_pred HHHHHHh-hhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCC
Q 002048 402 KGIATHY-RQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSP 480 (975)
Q Consensus 402 ~~L~~~~-~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~ 480 (975)
+.++.+. |+.+++++++++..+++ +.+|+.|.|++.+++++++++.+-+. -++++ +.++|++.|++
T Consensus 334 DrlA~~L~g~~v~p~~~~~l~~~l~------S~~w~~R~AaL~Als~i~EGc~~~m~-----~~l~~-Il~~Vl~~l~D- 400 (1075)
T KOG2171|consen 334 DRLALHLGGKQVLPPLFEALEAMLQ------STEWKERHAALLALSVIAEGCSDVMI-----GNLPK-ILPIVLNGLND- 400 (1075)
T ss_pred HHHHhcCChhhehHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHcccHHHHH-----HHHHH-HHHHHHhhcCC-
Confidence 9999886 58999999999999997 68999999999999999977632111 12333 34678899988
Q ss_pred CCCCcchhHhhHHHHHHHhhccCCH----hHHHhHHHHHHHhhcCC-CchHHHHHHHHHHHHHccccCCCcccccccccc
Q 002048 481 DVNAFPMLKAGALKFFTMFRIQIPK----IHAFQFFPDLVRFLGAE-SNVVHSYAASCIEKLLQVKDEGGKSRYNSADIT 555 (975)
Q Consensus 481 ~~~~~~~Lr~ra~~~l~~f~~~~~~----~~~~~~~~~l~~~L~~~-~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~ 555 (975)
+||.+|..||..+||++..+.+ .+...+.++++..+.++ +..|+.+||.|+-.|.+.+ .++.+.
T Consensus 401 ---phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~--------~~~~l~ 469 (1075)
T KOG2171|consen 401 ---PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEEC--------DKSILE 469 (1075)
T ss_pred ---CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhC--------cHHHHH
Confidence 6999999999999999887643 55677778899999987 6799999999999988865 478999
Q ss_pred chHHHHHHHHHHhcCCCC-chhhHHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHhCCCC---CchhHHHHHHHH
Q 002048 556 PYLSVLMTSLFNAFKFPE-SEENQYIMKCIMRVLG-VAEISNEVAAPCISGLTSILNEVCKNPKS---PIFNHYLFESVA 630 (975)
Q Consensus 556 p~l~~il~~L~~ll~~~~-~~~~~~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~~l~~~~~~~~~---~~~~~~~~e~l~ 630 (975)
||++.+|+.++..+.+.+ ....+.++.+|.++.. .++.+.||++.++..|..+++ |.++ ...+..++||++
T Consensus 470 pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~----n~~~~d~r~LrgktmEcis 545 (1075)
T KOG2171|consen 470 PYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQ----NADDKDLRELRGKTMECLS 545 (1075)
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHh----CCCchhhHHHHhhHHHHHH
Confidence 999999996666664443 3467788999999999 999999999988888776653 4442 335688999999
Q ss_pred HHHHHhhhcCcchHHHHHHhhHHHHHHHHh---cccccchHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCccccc--c-
Q 002048 631 VLVRRACQRDPSLISAFEASILPSLQIILQ---NDVTEFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWK--R- 704 (975)
Q Consensus 631 ~li~~~~~~~~~~~~~l~~~l~P~i~~il~---~~~~~~~~~~l~ll~~ll~~~~~~~~~~~~~lf~~l~~~~l~~--~- 704 (975)
.+..++++ +.+..+.+.++-.....-. .+.....+|....|+.+-+. +++.+.+++|.++.|.+.. .
T Consensus 546 li~~AVGk---e~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~i----lg~~F~p~L~~Vmppl~~ta~~~ 618 (1075)
T KOG2171|consen 546 LIARAVGK---EKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRI----LGDDFAPFLPVVMPPLLKTARLD 618 (1075)
T ss_pred HHHHHhhh---hhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHH----hchhhHhHHHHHhHHHHHhhccC
Confidence 99999842 3344444444443333311 12223678889999988777 5556666666655543211 0
Q ss_pred C--CCccchHHHHHHHHccCccchhccCchHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcchhhHhhhHHHHHHHHHHH
Q 002048 705 S--SNVPALVRLLQAFLQKVPREIAQEGKLREVLGIFNMLVLSPSTDEQGFYVLNTIVESLEYGVIAQFVPHIWGVLFTR 782 (975)
Q Consensus 705 ~--~~l~~~~~~L~~~i~~~~~~~~~~~~~~~il~i~~~ll~~~~~~~~a~~ll~~ii~~~~~~~~~~~l~~il~~~l~~ 782 (975)
+ ..+.+ .....+-..+.-++..-+.-+ -++|-...+..+ ..||..+..+...+ ++.+.||+.+.++..+..
T Consensus 619 p~~~~~d~--~d~e~~~~~~~~e~~~~~~~e-~~~I~Tsvl~eK---~~A~~~Lv~~a~~l-k~~F~pYve~v~~l~v~~ 691 (1075)
T KOG2171|consen 619 PDVALSDE--EDEEEEQDLDGWEVVELGDKE-NIGIRTSVLDEK---ETACEALGEYAKEL-KEAFAPYVEQVVELMVPL 691 (1075)
T ss_pred CcccCcCc--hhhhhccccccchhhccCCce-eeeeeehhHHHH---HHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHH
Confidence 1 11100 000000001111111100000 222222222111 56888888888886 578899999888855555
Q ss_pred hh
Q 002048 783 LQ 784 (975)
Q Consensus 783 L~ 784 (975)
+.
T Consensus 692 l~ 693 (1075)
T KOG2171|consen 692 LK 693 (1075)
T ss_pred HH
Confidence 54
No 11
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.4e-36 Score=326.90 Aligned_cols=679 Identities=15% Similarity=0.169 Sum_probs=430.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHhc--CCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCCCCc
Q 002048 10 HLSQCFLHTLSPSPEPRRAAERSLAEMAD--RPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPTL 87 (975)
Q Consensus 10 ~l~~~L~~tls~d~~~r~~AE~~L~~~~~--~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~~~ 87 (975)
++.++|..++|||+++|+.||.+|+++.. -|+|...|.+++.+.+.+...|.+|++.|||.+..+=......+. ..|
T Consensus 2 ~~~~~le~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~-qRW 80 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQ-QRW 80 (859)
T ss_pred cHHHHHHHHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHH-HHH
Confidence 46788999999999999999999999987 479999999999999999999999999999998643221100000 014
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCC-CCCCchHHHHHHHhcccccCCChhHHhHHHHHHHHH
Q 002048 88 APILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFP-KHWPTLLPELIANLKDAAQSNNYVSINGILGTANSI 166 (975)
Q Consensus 88 ~~i~~e~K~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P-~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i 166 (975)
-.++.|.|++||++++..|.++.+...+..+.|++.||+.+.| ++||+|++.++....+++ ......++|.++..+
T Consensus 81 l~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~---~~~~k~~slealGyi 157 (859)
T KOG1241|consen 81 LQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQ---ASMVKESSLEALGYI 157 (859)
T ss_pred HcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhccccc---chHHHHHHHHHHHHH
Confidence 4799999999999999999988889999999999999999999 789999999999998773 224678999999999
Q ss_pred HHhhhccccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhcccCCCchHHHH
Q 002048 167 FKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFED 246 (975)
Q Consensus 167 ~k~~~~~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~~~lp~~~~~ 246 (975)
|.+.+. +. +.+.. -.+++.+.+..... +++..++-.+..+|+-++. |...
T Consensus 158 ce~i~p----ev--------l~~~s---N~iLtaIv~gmrk~---e~s~~vRLaa~~aL~nsLe------------f~~~ 207 (859)
T KOG1241|consen 158 CEDIDP----EV--------LEQQS---NDILTAIVQGMRKE---ETSAAVRLAALNALYNSLE------------FTKA 207 (859)
T ss_pred HccCCH----HH--------HHHHH---hHHHHHHHhhcccc---CCchhHHHHHHHHHHHHHH------------HHHH
Confidence 997642 11 11111 12223333322222 3333333334344433332 2222
Q ss_pred hHHHHHH--HHHHHhcccCCcccCCCCcCchHHHHHHHHHHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHhccCCCCcch
Q 002048 247 HMREWMT--EFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQGYLND-FALAVWTLLGNVSQSSSRD 323 (975)
Q Consensus 247 ~~~~~~~--~~~~~l~~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~f~~~~~~-~~~~~~~~l~~~~~~~~~~ 323 (975)
++..=++ .+.++. .+-+.++..+++..++.|++++..-|.+.+.+|+.+ ++......+. ...|
T Consensus 208 nF~~E~ern~iMqvv---------cEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amk-----s~~d 273 (859)
T KOG1241|consen 208 NFNNEMERNYIMQVV---------CEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMK-----SDND 273 (859)
T ss_pred hhccHhhhceeeeee---------eecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCcH
Confidence 2221111 111110 111334447899999999999999998888787754 3333333322 3468
Q ss_pred HHHHHHHHHHHhh-chh-----hhhhcccC--CC----chhhHHHHhhcccCCCChhhHHHHhh-CHHHHHhhcCCCCcc
Q 002048 324 SLAVTAIKFLTNV-STS-----VHHTLFAG--EG----VIPQICQNIVIPNVRLRDEDEELFEM-NYVEFIRRDMEGSDV 390 (975)
Q Consensus 324 ~~~~~~l~fl~~~-~~~-----~~~~~~~~--~~----~l~~l~~~li~~~l~l~~~d~e~we~-dp~efv~~~~d~~d~ 390 (975)
++..+++|||+++ ..+ .|...+.. +| +..+-+..+ .|.+. +.... | +.+++|.
T Consensus 274 eValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v-~P~Ll------~~L~kqd-------e~~d~Dd 339 (859)
T KOG1241|consen 274 EVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDV-VPVLL------ELLTKQD-------EDDDDDD 339 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHh-hHHHH------HHHHhCC-------CCccccc
Confidence 9999999999977 322 11111110 11 111112111 13221 11111 1 1224466
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHH
Q 002048 391 DTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFT 470 (975)
Q Consensus 391 ~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~ 470 (975)
|+|..||..+|.-+++.-++.++++++.|+.+.++ ++||+.||++.+++|++-++-.. .+. ..+..=..
T Consensus 340 Wnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~------~pdwr~reaavmAFGSIl~gp~~--~~L---t~iV~qal 408 (859)
T KOG1241|consen 340 WNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQ------NPDWRNREAAVMAFGSILEGPEP--DKL---TPIVIQAL 408 (859)
T ss_pred CcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcC------CcchhhhhHHHHHHHhhhcCCch--hhh---hHHHhhhh
Confidence 99999999999999999999999999999999886 67999999999999999643211 000 01111111
Q ss_pred HhcccccCCCCCCCcchhHhhHHHHHHHhhccC-----CHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCC
Q 002048 471 SVIVPELQSPDVNAFPMLKAGALKFFTMFRIQI-----PKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGG 545 (975)
Q Consensus 471 ~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~-----~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~ 545 (975)
..++....+ +.-++|..+.|.+|+..+.+ +.+++...++.++..|+| ++.|..-+|+|+..+.+......
T Consensus 409 p~ii~lm~D----~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~ 483 (859)
T KOG1241|consen 409 PSIINLMSD----PSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAA 483 (859)
T ss_pred HHHHHHhcC----chhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhc
Confidence 222333343 57889999999999987654 457888899999999987 45677789999999886542110
Q ss_pred ccccccccccchHHHHHHHHHHhcCCCCchh-h--HHHHHHHHHHHh-hccchhhhHHH----HHHHHHHHHHHHHhCCC
Q 002048 546 KSRYNSADITPYLSVLMTSLFNAFKFPESEE-N--QYIMKCIMRVLG-VAEISNEVAAP----CISGLTSILNEVCKNPK 617 (975)
Q Consensus 546 ~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~-~--~~l~~~l~~vi~-~~~~i~p~~~~----l~~~L~~~l~~~~~~~~ 617 (975)
...-..+...|+.+.|+..|++.-+..+..+ | ...-+++|.++. ..+...|-... ++.+|-+.++.-.-+.+
T Consensus 484 ~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~ 563 (859)
T KOG1241|consen 484 VSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLA 563 (859)
T ss_pred cCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHh
Confidence 0011122345999999999998876654222 2 244578888888 66665554332 33444444431111222
Q ss_pred C-Cc---hhHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhc-ccccchHHHHHHHHHHHHhcCCCCchhHHHH
Q 002048 618 S-PI---FNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQN-DVTEFLPYAFQLLAQLIELNRPPLSSNYMQI 692 (975)
Q Consensus 618 ~-~~---~~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~-~~~~~~~~~l~ll~~ll~~~~~~~~~~~~~l 692 (975)
| .. +...+..++..+++.++. ......+.++-.|..+++. .+.-.-+++|--+++++++.....-..|-.+
T Consensus 564 dr~q~~eLQs~Lc~~Lq~i~rk~~~----~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f 639 (859)
T KOG1241|consen 564 DRAQLNELQSLLCNTLQSIIRKVGS----DIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAF 639 (859)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHccc----cchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 2 11 234566688888888732 3455666777777777766 3333457788888888887332122222223
Q ss_pred HHhhcCccccccCC---------CccchHHHHHHHHccCccchhccCchHHHHHHHHHhhcCCCCcc----hHHHHHHHH
Q 002048 693 FNLLLSPDSWKRSS---------NVPALVRLLQAFLQKVPREIAQEGKLREVLGIFNMLVLSPSTDE----QGFYVLNTI 759 (975)
Q Consensus 693 f~~l~~~~l~~~~~---------~l~~~~~~L~~~i~~~~~~~~~~~~~~~il~i~~~ll~~~~~~~----~a~~ll~~i 759 (975)
.|.+.. .+-...+ .+..+.+.|+. .|. +|-..++..+-++|+++..+. ..+...++|
T Consensus 640 ~pyL~~-gL~n~~e~qVc~~aVglVgdl~raL~~-------~i~--py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDI 709 (859)
T KOG1241|consen 640 KPYLLM-GLSNFQEYQVCAAAVGLVGDLARALED-------DIL--PYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDI 709 (859)
T ss_pred HHHHHH-HhhcchHHHHHHHHHHHHHHHHHHHHh-------hhh--hHHHHHHHHHHHHccCccccccccchHHHHHHHH
Confidence 333322 1111111 12222222222 222 477777877778887766542 356777999
Q ss_pred HHhcchhhHhhhHHHHHHHHHH
Q 002048 760 VESLEYGVIAQFVPHIWGVLFT 781 (975)
Q Consensus 760 i~~~~~~~~~~~l~~il~~~l~ 781 (975)
..+++ ..+.+|+..++..+-+
T Consensus 710 AlaIg-~~F~~Yl~~vm~llq~ 730 (859)
T KOG1241|consen 710 ALAIG-ADFEPYLEMVMPLLQQ 730 (859)
T ss_pred HHHHH-HhHHHHHHHHHHHHHH
Confidence 99985 7789999877665533
No 12
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.8e-29 Score=266.46 Aligned_cols=670 Identities=13% Similarity=0.168 Sum_probs=393.0
Q ss_pred HHHHHHHH-hcCCChHHHHHHHHHHHHHhcCC--ChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCCCC
Q 002048 10 HLSQCFLH-TLSPSPEPRRAAERSLAEMADRP--NYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPT 86 (975)
Q Consensus 10 ~l~~~L~~-tls~d~~~r~~AE~~L~~~~~~p--~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~~ 86 (975)
++.++.++ .+|||+++|..||.+|+++.... .|...|.+.+++.+..+..|..|++.|||.+..+=......+. ..
T Consensus 5 ef~~l~~n~vLspD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~-qr 83 (858)
T COG5215 5 EFRCLGKNHVLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCS-QR 83 (858)
T ss_pred HHHHHHhcccCCCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHH-Hh
Confidence 45555543 59999999999999999998754 7999999999998888999999999999998654321110000 01
Q ss_pred cCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCC-CCCCchHHHHHHHhcccccCCChhHHhHHHHHHHH
Q 002048 87 LAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFP-KHWPTLLPELIANLKDAAQSNNYVSINGILGTANS 165 (975)
Q Consensus 87 ~~~i~~e~K~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P-~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~ 165 (975)
|..+++|.|++||...++.|.++.+.+-+..|..++.||+.+.| +.||+|+..++.....++ -......+|.++..
T Consensus 84 W~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eq---p~~~k~~sl~~~gy 160 (858)
T COG5215 84 WLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQ---PVSGKCESLGICGY 160 (858)
T ss_pred hccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccC---chHhHHHHHHHHHH
Confidence 44699999999999999999999999999999999999999999 689999999999987773 33456678888888
Q ss_pred HHHhhhccccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhcccCCCchHHH
Q 002048 166 IFKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFE 245 (975)
Q Consensus 166 i~k~~~~~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~~~lp~~~~ 245 (975)
.|+.-. .+. ++...-.-++.+... -..+ +++..++-. .+|++++.. .+..
T Consensus 161 ~ces~~----Pe~-------li~~sN~il~aiv~g----a~k~---et~~avRLa-------aL~aL~dsl-----~fv~ 210 (858)
T COG5215 161 HCESEA----PED-------LIQMSNVILFAIVMG----ALKN---ETTSAVRLA-------ALKALMDSL-----MFVQ 210 (858)
T ss_pred HhhccC----HHH-------HHHHhhHHHHHHHHh----hccc---CchHHHHHH-------HHHHHHHHH-----HHHH
Confidence 887532 111 111111122222211 1111 333322222 344443311 2222
Q ss_pred HhH------HHHHHHHHHHhcccCCcccCCCCcCchHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHhccCCC
Q 002048 246 DHM------REWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQGYLNDFALAVWTLLGNVSQS 319 (975)
Q Consensus 246 ~~~------~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~ 319 (975)
.++ +.+|+..... +.++...+...++-|++++..-|.+.+.+|+.+ .+-.++.....
T Consensus 211 ~nf~~E~erNy~mqvvcea-------------tq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~----aL~alt~~~mk 273 (858)
T COG5215 211 GNFCYEEERNYFMQVVCEA-------------TQGNDEELQHAAFGCLNKIMMLYYKFMQSYMEN----ALAALTGRFMK 273 (858)
T ss_pred Hhhcchhhhchhheeeehh-------------ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhc
Confidence 222 2222211111 222336788899999999998887655555543 32222222223
Q ss_pred CcchHHHHHHHHHHHhh-chhh---hh-hcc-----cCCCchhhHHHHhhcccCCCChhhHHHHhhCHHHHHhhcCCCCc
Q 002048 320 SSRDSLAVTAIKFLTNV-STSV---HH-TLF-----AGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSD 389 (975)
Q Consensus 320 ~~~~~~~~~~l~fl~~~-~~~~---~~-~~~-----~~~~~l~~l~~~li~~~l~l~~~d~e~we~dp~efv~~~~d~~d 389 (975)
...|++.+++++||+++ +.+. +- +.+ .+.++...-+..+ +|.+. .=++.=.+|| .+|
T Consensus 274 s~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dv-lP~lL---~LL~~q~ed~---------~~D 340 (858)
T COG5215 274 SQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADV-LPELL---SLLEKQGEDY---------YGD 340 (858)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHH-HHHHH---HHHHhcCCCc---------ccc
Confidence 34689999999999887 3221 10 111 0111111111111 12211 0011111222 346
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHH
Q 002048 390 VDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFF 469 (975)
Q Consensus 390 ~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l 469 (975)
.|++..+|..+|.-.++..++.+..+++.|+.+.++ +++|+.||++..++|++-+ |.- .+.-..+
T Consensus 341 dWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~------~~~w~nreaavmAfGSvm~----gp~-----~~~lT~~ 405 (858)
T COG5215 341 DWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIR------SESWANREAAVMAFGSVMH----GPC-----EDCLTKI 405 (858)
T ss_pred ccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhcc------CchhhhHHHHHHHhhhhhc----Ccc-----HHHHHhh
Confidence 789999999999999999999999999999999886 6899999999999999854 321 1111222
Q ss_pred HHhcccccCCCCCCCcchhHhhHHHHHHHhhccC----CH-hHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCC
Q 002048 470 TSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQI----PK-IHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEG 544 (975)
Q Consensus 470 ~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~----~~-~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~ 544 (975)
.+..+|.+..-..++.-+++.++.|++|+.++++ +| .++.......+-.|.|. +-+.+..+++...++++-.+.
T Consensus 406 V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~-p~~~~ncsw~~~nlv~h~a~a 484 (858)
T COG5215 406 VPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDC-PFRSINCSWRKENLVDHIAKA 484 (858)
T ss_pred HHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhcc-chHHhhhHHHHHhHHHhhhhh
Confidence 3333444332212368899999999999987653 33 45666667666666653 334456788888887753210
Q ss_pred CccccccccccchHHHHHHHHHHhcCCCCchhhH--HHHHHHHHHHh-hccchhhhHHHH----HHHHHHHHHHHHh--C
Q 002048 545 GKSRYNSADITPYLSVLMTSLFNAFKFPESEENQ--YIMKCIMRVLG-VAEISNEVAAPC----ISGLTSILNEVCK--N 615 (975)
Q Consensus 545 ~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~--~l~~~l~~vi~-~~~~i~p~~~~l----~~~L~~~l~~~~~--~ 615 (975)
.+.....+.|+.+.|+..|++.-+...++.|- ....++..++. +.+.+.|....+ ..+|-..+..... .
T Consensus 485 --~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~ 562 (858)
T COG5215 485 --VREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILA 562 (858)
T ss_pred --hccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 01125668899999999999776554333222 44567777777 666655543333 2232222211110 0
Q ss_pred CCCC----chhHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhcccccc-hHHHHHHHHHHHHhcCCCCchhHH
Q 002048 616 PKSP----IFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDVTEF-LPYAFQLLAQLIELNRPPLSSNYM 690 (975)
Q Consensus 616 ~~~~----~~~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~~~~~-~~~~l~ll~~ll~~~~~~~~~~~~ 690 (975)
-.|. .+.......+..+|+. .+......+..++.+|-.+|+.....+ .++++--++.+... +...+.
T Consensus 563 ~eD~~~~~elqSN~~~vl~aiir~----~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~s----l~e~Fe 634 (858)
T COG5215 563 TEDQLLVEELQSNYIGVLEAIIRT----RRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTS----LEERFE 634 (858)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh----cCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHH----HHHHHH
Confidence 0111 1122333444444444 233345556666777777776553333 35565555555332 222332
Q ss_pred HHHHhhcCccccccCCCccchHHHHHHHHccCc------------cchhccCchHHHHHHHHHhhcCCCCcc----hHHH
Q 002048 691 QIFNLLLSPDSWKRSSNVPALVRLLQAFLQKVP------------REIAQEGKLREVLGIFNMLVLSPSTDE----QGFY 754 (975)
Q Consensus 691 ~lf~~l~~~~l~~~~~~l~~~~~~L~~~i~~~~------------~~~~~~~~~~~il~i~~~ll~~~~~~~----~a~~ 754 (975)
+..+.+.. |+...+++-+.++.... +.|. .|...++..+-++++++..+. ..+.
T Consensus 635 ~y~~~fiP--------yl~~aln~~d~~v~~~avglvgdlantl~~df~--~y~d~~ms~LvQ~lss~~~~R~lKPaiLS 704 (858)
T COG5215 635 QYASKFIP--------YLTRALNCTDRFVLNSAVGLVGDLANTLGTDFN--IYADVLMSSLVQCLSSEATHRDLKPAILS 704 (858)
T ss_pred HHHhhhhH--------HHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcChhhccccchHHHH
Confidence 22221111 11111111222222111 1121 356666677777777655432 2456
Q ss_pred HHHHHHHhcchhhHhhhHHHHHHHHH
Q 002048 755 VLNTIVESLEYGVIAQFVPHIWGVLF 780 (975)
Q Consensus 755 ll~~ii~~~~~~~~~~~l~~il~~~l 780 (975)
+.++|..+++ ..+.+|+..|+....
T Consensus 705 vFgDIAlaig-a~F~~YL~~im~L~q 729 (858)
T COG5215 705 VFGDIALAIG-ANFESYLDMIMMLFQ 729 (858)
T ss_pred HHHHHHHHHh-hhHHHHHHHHHHHHH
Confidence 6788888875 567888877765443
No 13
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.85 E-value=9.1e-16 Score=164.94 Aligned_cols=511 Identities=14% Similarity=0.209 Sum_probs=303.0
Q ss_pred hhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCC
Q 002048 5 QETLQHLSQCFLHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSG 84 (975)
Q Consensus 5 ~~~~~~l~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~ 84 (975)
+.|.+-+-++.+....+|...+++|++-|.+++..|+.|.---.|+.+.. -++.+..|.-.|-+.|++.|+
T Consensus 10 dLdiallDkVVttfyqg~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~S~-~pqskyiALs~LdklIttkWk-------- 80 (1053)
T COG5101 10 DLDIALLDKVVTTFYQGDGRKQEQAQRILTKFQELPDAWTKADYILNNSK-LPQSKYIALSLLDKLITTKWK-------- 80 (1053)
T ss_pred ccCHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhCchHHHHHHHHHhccc-CcchhhhHHHHHHHHHHhhhh--------
Confidence 35678888999999999999999999999999999999999999998854 568899999999999999998
Q ss_pred CCcCCCCHHHHHHHHHHHHHHHhcCC--HHHH-------HHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccCCChhH
Q 002048 85 PTLAPILDAEKDQIKSLIVGLMLTST--PRIQ-------SQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVS 155 (975)
Q Consensus 85 ~~~~~i~~e~K~~Ir~~ll~~l~~~~--~~ir-------~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~~~ 155 (975)
-+|++.|..||.-+++.+++.+ .++| ..+-..+..|++.|||.+||+++|++++.-+ . +...
T Consensus 81 ----llp~~~r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~-~----s~~v 151 (1053)
T COG5101 81 ----LLPEGMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQ-I----SMEV 151 (1053)
T ss_pred ----hCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhcc-c----hHHH
Confidence 6899999999999999998753 3444 4556677889999999999999999999755 2 4555
Q ss_pred HhHHHHHHHHHHHhhhccccchhh----hhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHH
Q 002048 156 INGILGTANSIFKKFRYQFKTNDL----LLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRI 231 (975)
Q Consensus 156 ~~~~L~~l~~i~k~~~~~~~~~~~----~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~ 231 (975)
....|.+|..+-++. ..++.+.. ...++.-+..=+|++|.+..++... +.+.+.+...++.+.
T Consensus 152 CeNnmivLklLsEEv-FdfSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~-------~~~~SLi~ATLesll----- 218 (1053)
T COG5101 152 CENNMIVLKLLSEEV-FDFSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEY-------SRDESLIEATLESLL----- 218 (1053)
T ss_pred HhccHHHHHHhHHHH-HhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-------cCChHHHHHHHHHHH-----
Confidence 555555555444331 00111111 1123334444455666655554432 333444444444332
Q ss_pred hhhcccCCCchHHHHhHHHH-HHHHHH----------Hhc----c-cCCcccCCCCcCchHHHHHHHHHHHHH-------
Q 002048 232 FYSLNFQELPEFFEDHMREW-MTEFKK----------YLT----T-NYPALESTSDGLGLVDGLRAAVCENIS------- 288 (975)
Q Consensus 232 ~~~~~~~~lp~~~~~~~~~~-~~~~~~----------~l~----~-~~~~l~~~~~~~~~~~~~k~~~~~~l~------- 288 (975)
+.+.+..+.-.|+.++-.. .+-|.. +|. . ..|. +.++ .....-+--.+...+.
T Consensus 219 -rfl~wiPl~yIfeTnIieLv~~~f~s~pd~r~~tl~CLtEi~~L~~~pq--~n~~-~~r~~v~~fq~i~~~~~~s~~p~ 294 (1053)
T COG5101 219 -RFLEWIPLDYIFETNIIELVLEHFNSMPDTRVATLSCLTEIVDLGRHPQ--ENAE-KERILVIHFQCIEFLKMYSNKPQ 294 (1053)
T ss_pred -HHHhhCchhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhhccCcc--cchh-hhhHHHHHHHHHHHHHHHhccch
Confidence 2223332222233222221 111111 111 0 0110 1110 0000000011111111
Q ss_pred --HHHHHhH------HHHH----hhHHHHHHHHHHHHhccCC--------C-------CcchHHHHHHHHHHHhh-chhh
Q 002048 289 --LYMKMNE------EEFQ----GYLNDFALAVWTLLGNVSQ--------S-------SSRDSLAVTAIKFLTNV-STSV 340 (975)
Q Consensus 289 --~~~~~~~------~~f~----~~~~~~~~~~~~~l~~~~~--------~-------~~~~~~~~~~l~fl~~~-~~~~ 340 (975)
++.+.|+ ..|. .++..+......++.+... + -...++..-++++|... .. .
T Consensus 295 ~~d~~e~Y~~~~~neq~Fvq~LA~fL~s~~~~~~~lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVad-L 373 (1053)
T COG5101 295 EEDIYEVYGGMDKNEQIFVQKLAQFLSSLYEVYISLLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVAD-L 373 (1053)
T ss_pred HHHHHHHHcccChhHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHH-H
Confidence 1122222 1222 2223333333323222110 0 01245667788888753 11 1
Q ss_pred h-------------------------------------hhcccCCCchhhHHHHhhcccCCCChhhHHHHhhCHHHHHhh
Q 002048 341 H-------------------------------------HTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRR 383 (975)
Q Consensus 341 ~-------------------------------------~~~~~~~~~l~~l~~~li~~~l~l~~~d~e~we~dp~efv~~ 383 (975)
| |.++ .+.+.++-. +++.+|. ++|+.-.-++|-.|-||+
T Consensus 374 y~E~q~lp~tem~Pli~ls~~s~~istnpn~~~~~pLrkhiY--~~ilsqLrl-vlienMv-rPEEVliVendegEivRe 449 (1053)
T COG5101 374 YSEFQRLPATEMSPLIQLSVGSQAISTNPNQDSTKPLRKHIY--IGILSQLRL-VLIENMV-RPEEVLIVENDEGEIVRE 449 (1053)
T ss_pred HHHHHhCcccccCcchhccccchhccCCcchhcccchHHHHH--HHHHHHHHH-HHHHcCC-CcceEEEEECCCcHHHHH
Confidence 1 1111 123444433 3346665 566666678888899988
Q ss_pred cCCCCcchhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcc
Q 002048 384 DMEGSDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLV 463 (975)
Q Consensus 384 ~~d~~d~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~ 463 (975)
-..++|.-..-++-.++|..|++..-.++-..+.+.+...+. +...+|.......+|+|+++....+ +
T Consensus 450 fvketDtI~lYksmRevLvyLthL~v~Dte~~mi~Klarq~d----g~EWsw~nlNtLcWAIGSISGamsE--------~ 517 (1053)
T COG5101 450 FVKETDTIELYKSMREVLVYLTHLIVDDTEKYMIGKLARQLD----GKEWSWNNLNTLCWAIGSISGAMSE--------V 517 (1053)
T ss_pred HhccccHhHHHHHHhhHHHHHhhhhhhhHHHHHHHHHHHHhc----CCccchhhHhHHHHHHhcccchhhh--------H
Confidence 777777777777777788888766555554444444443332 2345799999999999999865533 2
Q ss_pred cHHHHHHHhcccccCC----CCCCCcchhHhhHHHHHHHhhccC--CHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 002048 464 DVQSFFTSVIVPELQS----PDVNAFPMLKAGALKFFTMFRIQI--PKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKL 537 (975)
Q Consensus 464 ~~~~~l~~~v~p~l~~----~~~~~~~~Lr~ra~~~l~~f~~~~--~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~ 537 (975)
+=..|+.+++...|.- ..-+....+.+....++|+|..-+ ....+..++..+...|...+-.|+-.||.+.-++
T Consensus 518 ~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKI 597 (1053)
T COG5101 518 NEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKI 597 (1053)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHH
Confidence 2346777766544421 011135677777888889875432 2367889999999999988999999999998887
Q ss_pred HccccCCCccccccccccchHHHHHHHHHHh
Q 002048 538 LQVKDEGGKSRYNSADITPYLSVLMTSLFNA 568 (975)
Q Consensus 538 ~~~~~~~~~~~~~~~~l~p~l~~il~~L~~l 568 (975)
+.-|. ..+......+-.|++..|+..|-+.
T Consensus 598 vqKC~-~hFv~Qq~gesEpFI~~Iirnl~kt 627 (1053)
T COG5101 598 VQKCP-VHFVTQQEGESEPFIVYIIRNLPKT 627 (1053)
T ss_pred HHhCc-HHHhhcCCCCCCcHHHHHHHhhhhh
Confidence 76543 2222223344567777777766543
No 14
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.4e-14 Score=162.69 Aligned_cols=607 Identities=12% Similarity=0.139 Sum_probs=354.3
Q ss_pred hhhHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCC
Q 002048 5 QETLQHLSQCFLHTLSP-SPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNS 83 (975)
Q Consensus 5 ~~~~~~l~~~L~~tls~-d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~ 83 (975)
+.+.+++.+++...+++ +.+....+++.|+++++.|.-+..-.++++.+. ...+|.++|+.|.-.|.+||.
T Consensus 3 ~~~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k-~~evqyFGAltL~~ki~~~~e------- 74 (982)
T KOG2022|consen 3 SDLIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDK-SSEVQYFGALTLHDKINTRWE------- 74 (982)
T ss_pred chHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCc-hhHHHHHhHHHHHHHHHhhhc-------
Confidence 44688999999999997 777888889999999999987888888888764 456799999999999999998
Q ss_pred CCCcCCCCHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccCCCh--hHHhH
Q 002048 84 GPTLAPILDAEKDQIKSLIVGLMLTS---TPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNY--VSING 158 (975)
Q Consensus 84 ~~~~~~i~~e~K~~Ir~~ll~~l~~~---~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~--~~~~~ 158 (975)
.+++++...+|..++..+... ++.|-+.++.+++..+-+.-|++||+-+.+++..++.+. ++ .....
T Consensus 75 -----~~~~~~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~---~p~v~ad~n 146 (982)
T KOG2022|consen 75 -----ECPANEAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQA---SPLVLADIN 146 (982)
T ss_pred -----cCChhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhccc---Cccccchhh
Confidence 578899999999999887753 355777888888888888889999999999999998752 22 11122
Q ss_pred H---HHHHHHHHHhhhcc----ccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHH
Q 002048 159 I---LGTANSIFKKFRYQ----FKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRI 231 (975)
Q Consensus 159 ~---L~~l~~i~k~~~~~----~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~ 231 (975)
+ |..|.-+-.+++.. .+...++.++..... ...+++........+. ..+. ..+-....++|+
T Consensus 147 ~~~~Le~Ls~~p~e~q~~~l~~t~~~~l~~eLak~~~----~v~~l~e~vlr~~~n~-----t~s~--~~~i~~~~a~dC 215 (982)
T KOG2022|consen 147 CEILLEVLSFMPAEFQHVTLPLTRRSVLRGELAKFSE----NVISLLEVVLRGGSNS-----TSSL--INLIFKQAAVDC 215 (982)
T ss_pred HHHHHHHhccCcHhhhhccchhHHHHHHHHHHHHHHH----HHhHHHHHHHhccccc-----cHHH--HHHHhhhHHHHH
Confidence 2 22232222222221 011233334333333 3333444333221110 0110 011112223444
Q ss_pred hhhccc-CCCc-----hHHH--------------HhHHHHHHHHHHHhcccCC-c----ccCCCC-----cCchHHHHHH
Q 002048 232 FYSLNF-QELP-----EFFE--------------DHMREWMTEFKKYLTTNYP-A----LESTSD-----GLGLVDGLRA 281 (975)
Q Consensus 232 ~~~~~~-~~lp-----~~~~--------------~~~~~~~~~~~~~l~~~~~-~----l~~~~~-----~~~~~~~~k~ 281 (975)
+...+. ..+| ..+. ++...-|.+|...+..+-- + ...+|. ....++++-.
T Consensus 216 v~~Wi~~i~~~~~~c~~i~~~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~ 295 (982)
T KOG2022|consen 216 VEQWIRYISLTGMDCDQITQVLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICL 295 (982)
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHH
Confidence 433321 2222 0000 0111122222222221100 0 000110 0112222223
Q ss_pred HHHHHHHHHHHHhH--H-------HH--------HhhHHHHHH------------HHHHHHhccCCCCc----chHHHHH
Q 002048 282 AVCENISLYMKMNE--E-------EF--------QGYLNDFAL------------AVWTLLGNVSQSSS----RDSLAVT 328 (975)
Q Consensus 282 ~~~~~l~~~~~~~~--~-------~f--------~~~~~~~~~------------~~~~~l~~~~~~~~----~~~~~~~ 328 (975)
+.+.-.++..+... + .| .++++..++ .+.+.+......|+ .|.+...
T Consensus 296 ~~l~e~~~~~~~~e~~d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~ 375 (982)
T KOG2022|consen 296 GILQEVSGKIQEEENADASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDR 375 (982)
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHH
Confidence 33333322211111 0 00 012222222 22233332222232 3667788
Q ss_pred HHHHHHhh-c---------hhhhhhcccCCCchhhHHHHhhcccCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHH
Q 002048 329 AIKFLTNV-S---------TSVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIAC 398 (975)
Q Consensus 329 ~l~fl~~~-~---------~~~~~~~~~~~~~l~~l~~~li~~~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~ 398 (975)
.+.||.+. . .+.++..+. ++...++++..+-+....+++....|+.|-.| .+.+-|..-.
T Consensus 376 ~l~FW~tL~dei~~~~~e~~~~~~~i~~-~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e---------~F~~YR~diS 445 (982)
T KOG2022|consen 376 TLIFWYTLQDEIMQTINETQQIKKQILS-QQIYAQLVEILLKKLALPSKEIWLSWSSDSRE---------QFESYRKDIS 445 (982)
T ss_pred HHHHHHHHHHHHHHhhhccCCcchhHHH-HHHHHHHHHHHHHHhcCCCHHHhccCCcchHH---------HHHHHHHHHH
Confidence 89999875 1 112223331 35666777755534444556667788776533 2345688888
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHh--cccc
Q 002048 399 ELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSV--IVPE 476 (975)
Q Consensus 399 ~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~--v~p~ 476 (975)
+++...=+.+|+.++..+.+.+.+.+.....+| ..|...|++++.+.++++.+.... ..|+..- +.+.
T Consensus 446 D~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p-~s~~~tEaci~~~~sva~~~~~t~---------~~~i~rl~~~~as 515 (982)
T KOG2022|consen 446 DLLMSSYSILGDGLLDFLIDTLEQALAAGDEDP-DSLNRTEACIFQFQSVAEYLGETE---------STWIPRLFETSAS 515 (982)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCc-hHHHHHHHHHHHHHHHHhhcCcch---------hHHHHHHHHhccc
Confidence 888887777787777666666666665322221 359999999999999998762211 2333221 1223
Q ss_pred cCCCCCCCcchhHhhHHHHHHHhhccC--CHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccc
Q 002048 477 LQSPDVNAFPMLKAGALKFFTMFRIQI--PKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADI 554 (975)
Q Consensus 477 l~~~~~~~~~~Lr~ra~~~l~~f~~~~--~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l 554 (975)
.+... ..|-+-+.+...+|.+++++ .|..+...++++++.|..+...+ .|..+|+.+|+.+ ++.+
T Consensus 516 ik~S~--~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~s~--q~i~tl~tlC~~C---------~~~L 582 (982)
T KOG2022|consen 516 IKLSA--PNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSKESE--QAISTLKTLCETC---------PESL 582 (982)
T ss_pred ccccc--CChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCchHHH--HHHHHHHHHHHhh---------hhhC
Confidence 33221 36777888899999988765 46788999999999998766555 4666799999876 6799
Q ss_pred cchHHHHHHHHHHhcCCCC--chhhHHHHHHHHHHHh-h-ccchhhhHHHHHHHHHHHHHHHH-hCCCCC---chhHHHH
Q 002048 555 TPYLSVLMTSLFNAFKFPE--SEENQYIMKCIMRVLG-V-AEISNEVAAPCISGLTSILNEVC-KNPKSP---IFNHYLF 626 (975)
Q Consensus 555 ~p~l~~il~~L~~ll~~~~--~~~~~~l~~~l~~vi~-~-~~~i~p~~~~l~~~L~~~l~~~~-~~~~~~---~~~~~~~ 626 (975)
.||+.+++..+-..+.... ...+..+|++|+-+++ . .|++..|...+++.+..-++... .+-.++ ....-.+
T Consensus 583 ~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l 662 (982)
T KOG2022|consen 583 DPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQL 662 (982)
T ss_pred chHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Confidence 9999999999998886532 2256688999999998 4 46666777777776665554442 222222 2223345
Q ss_pred HHHHHHHHHhhhcC-------cc---------hHHHHHHhhHHHHHHHHhcccc--cchHHHH
Q 002048 627 ESVAVLVRRACQRD-------PS---------LISAFEASILPSLQIILQNDVT--EFLPYAF 671 (975)
Q Consensus 627 e~l~~li~~~~~~~-------~~---------~~~~l~~~l~P~i~~il~~~~~--~~~~~~l 671 (975)
.++++|..++.... |+ ....+.+.++|+|.++++.... ++.+.+.
T Consensus 663 ~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C 725 (982)
T KOG2022|consen 663 NTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASC 725 (982)
T ss_pred HHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 57777776653111 11 3456778899999999875433 3444433
No 15
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.1e-09 Score=128.41 Aligned_cols=437 Identities=14% Similarity=0.166 Sum_probs=269.3
Q ss_pred CCChHHHHHHHHHHHHHhcC----------CChHHHHHHHHHhcCcChHHHH----HHHHHHHhhhhcccCCCCCCCCCC
Q 002048 20 SPSPEPRRAAERSLAEMADR----------PNYGLAVLRLVAEQTIDEQIRH----AAAVNFKNHLRFRWAPASDRNSGP 85 (975)
Q Consensus 20 s~d~~~r~~AE~~L~~~~~~----------p~f~~~Ll~i~~~~~~~~~vRq----~Aai~lKn~I~~~W~~~~~~~~~~ 85 (975)
++|+++|+-|=-.++.+... ..--+.|+.++.... ...+|. ..|-..||-+...|.
T Consensus 48 ~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~-~~~vr~k~~dviAeia~~~l~e~WP--------- 117 (1075)
T KOG2171|consen 48 SADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSET-EPSVRHKLADVIAEIARNDLPEKWP--------- 117 (1075)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHhccccchH---------
Confidence 56778999887777655431 234566777777653 556664 355677887777663
Q ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCCCCC----CchHHHHHHHhcccccCCChhHHhHHHH
Q 002048 86 TLAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHW----PTLLPELIANLKDAAQSNNYVSINGILG 161 (975)
Q Consensus 86 ~~~~i~~e~K~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P~~W----p~Ll~~l~~~l~~~~~~~d~~~~~~~L~ 161 (975)
.+-+.|+++..+++...|-..-.+++.+... |++.- +++.+-+.++++.++ ++ ....+++
T Consensus 118 -----------ell~~L~q~~~S~~~~~rE~al~il~s~~~~-~~~~~~~~~~~l~~lf~q~~~d~s---~~-vr~~a~r 181 (1075)
T KOG2171|consen 118 -----------ELLQFLFQSTKSPNPSLRESALLILSSLPET-FGNTLQPHLDDLLRLFSQTMTDPS---SP-VRVAAVR 181 (1075)
T ss_pred -----------HHHHHHHHHhcCCCcchhHHHHHHHHhhhhh-hccccchhHHHHHHHHHHhccCCc---ch-HHHHHHH
Confidence 3566788888777778887777777766653 44433 367777777777773 44 7778899
Q ss_pred HHHHHHHhhhccccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhcccCCCc
Q 002048 162 TANSIFKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELP 241 (975)
Q Consensus 162 ~l~~i~k~~~~~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~~~lp 241 (975)
.+..+...... ....+ .....+.|.++..+.... + .++....+.+++++. .+.. ..|
T Consensus 182 A~~a~~~~~~~---~~~~~----~~~~~llP~~l~vl~~~i----~----~~d~~~a~~~l~~l~---El~e-----~~p 238 (1075)
T KOG2171|consen 182 ALGAFAEYLEN---NKSEV----DKFRDLLPSLLNVLQEVI----Q----DGDDDAAKSALEALI---ELLE-----SEP 238 (1075)
T ss_pred HHHHHHHHhcc---chHHH----HHHHHHhHHHHHHhHhhh----h----ccchHHHHHHHHHHH---HHHh-----hch
Confidence 99998875431 11111 123445566665554433 2 222222333333322 1111 136
Q ss_pred hHHHHhHHHHHHHHHHHhcccCCcccCCCCcCchHHHHHHHHHHHHHHHHHHhHH---HHHhhHHHHHHHHHHHHhccCC
Q 002048 242 EFFEDHMREWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEE---EFQGYLNDFALAVWTLLGNVSQ 318 (975)
Q Consensus 242 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~---~f~~~~~~~~~~~~~~l~~~~~ 318 (975)
.++.+++...+++.+.+.... +-+ ..+|..+.+++..+.+.-+. ...++...++..++.+++....
T Consensus 239 k~l~~~l~~ii~~~l~Ia~n~-----~l~------~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~ 307 (1075)
T KOG2171|consen 239 KLLRPHLSQIIQFSLEIAKNK-----ELE------NSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEED 307 (1075)
T ss_pred HHHHHHHHHHHHHHHHHhhcc-----ccc------HHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCccc
Confidence 777778888777777765431 111 35677788888877765332 2234555566666655544221
Q ss_pred C--------------CcchHHHHHHHHHHHhh-chhhhhhcccCCCchhhHHHHhhcccCCCChhhHHHHhhCHHHHHhh
Q 002048 319 S--------------SSRDSLAVTAIKFLTNV-STSVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRR 383 (975)
Q Consensus 319 ~--------------~~~~~~~~~~l~fl~~~-~~~~~~~~~~~~~~l~~l~~~li~~~l~l~~~d~e~we~dp~efv~~ 383 (975)
. ........+++++++.. ..+. ++ ++.+..+. -|.
T Consensus 308 D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~---v~--p~~~~~l~------~~l------------------- 357 (1075)
T KOG2171|consen 308 DDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQ---VL--PPLFEALE------AML------------------- 357 (1075)
T ss_pred chhhccccccccccccCcHHHHHHHHHHHHhcCChhh---eh--HHHHHHHH------HHh-------------------
Confidence 1 11245778888888876 3221 22 22222111 111
Q ss_pred cCCCCcchhhhHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCcccc
Q 002048 384 DMEGSDVDTRRRIACELLKGIATHYRQHV---METVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSIST 460 (975)
Q Consensus 384 ~~d~~d~~s~R~~A~~ll~~L~~~~~~~~---~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~ 460 (975)
.+..+.-|.||.--+..+++--++.+ ++.+++.+.+.++ + +..+.|.||+.++|.++..+.
T Consensus 358 ---~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~----D--phprVr~AA~naigQ~stdl~------- 421 (1075)
T KOG2171|consen 358 ---QSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLN----D--PHPRVRYAALNAIGQMSTDLQ------- 421 (1075)
T ss_pred ---cCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcC----C--CCHHHHHHHHHHHHhhhhhhc-------
Confidence 13345668898888888876655544 3444444444443 3 457999999999999986552
Q ss_pred CcccHHHHHHHhcccccCCC-CCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHH-----hhcCCCchHHHHHHHHH
Q 002048 461 DLVDVQSFFTSVIVPELQSP-DVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVR-----FLGAESNVVHSYAASCI 534 (975)
Q Consensus 461 ~~~~~~~~l~~~v~p~l~~~-~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~-----~L~~~~~~V~~~Aa~aL 534 (975)
..+.....+.+.|.|-.. +...++.+.+-|+-.+-.|.+.++++.+..+++.+++ +++++...||..|+.||
T Consensus 422 --p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaI 499 (1075)
T KOG2171|consen 422 --PEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAI 499 (1075)
T ss_pred --HHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 235666667777665431 1236788999999999888887776666666655555 34556889999999999
Q ss_pred HHHHccccCCCccccccccccchHHHHHHHHHHhcCCCC
Q 002048 535 EKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPE 573 (975)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~ 573 (975)
....+-. .+.|.||...+|..|.+.+...+
T Consensus 500 asvA~AA---------~~~F~pY~d~~Mp~L~~~L~n~~ 529 (1075)
T KOG2171|consen 500 ASVADAA---------QEKFIPYFDRLMPLLKNFLQNAD 529 (1075)
T ss_pred HHHHHHH---------hhhhHhHHHHHHHHHHHHHhCCC
Confidence 9876643 56789999999999999887765
No 16
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=3.8e-12 Score=138.75 Aligned_cols=479 Identities=11% Similarity=0.170 Sum_probs=288.0
Q ss_pred hHHHHHHHHHHHhcccCCcccCCCCcCchHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHhccCCCCcchHHH
Q 002048 247 HMREWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQGYLNDFALAVWTLLGNVSQSSSRDSLA 326 (975)
Q Consensus 247 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 326 (975)
.++..++-|+++.+.+. .|+|+.+..+++.+.---...+-.++..|++.++.+- ....+.-.+-+
T Consensus 171 pl~~mipkfl~f~~h~s-------------pkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFala--nD~~~eVRk~v 235 (885)
T KOG2023|consen 171 PLNIMIPKFLQFFKHPS-------------PKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALA--NDEDPEVRKNV 235 (885)
T ss_pred chHHhHHHHHHHHhCCC-------------hhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHc--cCCCHHHHHHH
Confidence 46666777777766543 3899999999998875555566667888888877654 22233345678
Q ss_pred HHHHHHHHhhchhhhhhcccCCCchhhHHHHhhcccCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHHH
Q 002048 327 VTAIKFLTNVSTSVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIAT 406 (975)
Q Consensus 327 ~~~l~fl~~~~~~~~~~~~~~~~~l~~l~~~li~~~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~ 406 (975)
+.++-|+..++.. ++ .||+..+++..+ ..-+ |++ .++.--|++|..++++
T Consensus 236 C~alv~Llevr~d---kl---~phl~~IveyML-~~tq-----------d~d------------E~VALEACEFwla~ae 285 (885)
T KOG2023|consen 236 CRALVFLLEVRPD---KL---VPHLDNIVEYML-QRTQ-----------DVD------------ENVALEACEFWLALAE 285 (885)
T ss_pred HHHHHHHHHhcHH---hc---ccchHHHHHHHH-HHcc-----------Ccc------------hhHHHHHHHHHHHHhc
Confidence 8999999888222 24 589999887554 2211 111 1133445566666654
Q ss_pred Hh-hhhhHHHHHHHHHHH--------------HHHhcc------------------------------C----------C
Q 002048 407 HY-RQHVMETVSVQIQNL--------------LTSFAA------------------------------N----------P 431 (975)
Q Consensus 407 ~~-~~~~~~~l~~~i~~~--------------l~~~~~------------------------------~----------~ 431 (975)
.- .+.++.+-+.-+..+ +.+... + .
T Consensus 286 qpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~ 365 (885)
T KOG2023|consen 286 QPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDA 365 (885)
T ss_pred CcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccc
Confidence 41 122221111111111 110000 0 0
Q ss_pred CCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccC-C--HhHH
Q 002048 432 VANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQI-P--KIHA 508 (975)
Q Consensus 432 ~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~-~--~~~~ 508 (975)
-.+|..|...-.++..++....+ -+..+++|.++..-.+..=++|..+...+|..++.+ . -+++
T Consensus 366 ~~dWNLRkCSAAaLDVLanvf~~-------------elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~L 432 (885)
T KOG2023|consen 366 FSDWNLRKCSAAALDVLANVFGD-------------ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHL 432 (885)
T ss_pred cccccHhhccHHHHHHHHHhhHH-------------HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccch
Confidence 01387777666777777654421 122344555543221245678899999999988743 1 3689
Q ss_pred HhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHH
Q 002048 509 FQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVL 588 (975)
Q Consensus 509 ~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi 588 (975)
++++|.++++|.|..+.||...|++|.++-.+- + .+.=..|+.++++.|++.+-+..+..-|....++..+.
T Consensus 433 peLip~l~~~L~DKkplVRsITCWTLsRys~wv-------~-~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtle 504 (885)
T KOG2023|consen 433 PELIPFLLSLLDDKKPLVRSITCWTLSRYSKWV-------V-QDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLE 504 (885)
T ss_pred HHHHHHHHHHhccCccceeeeeeeeHhhhhhhH-------h-cCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987652 1 11223466666666666554543333333344444444
Q ss_pred h-hccchhhhHHHHHHHHHHHHHHHHh-CCCCCchhHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHH---hccc
Q 002048 589 G-VAEISNEVAAPCISGLTSILNEVCK-NPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIIL---QNDV 663 (975)
Q Consensus 589 ~-~~~~i~p~~~~l~~~L~~~l~~~~~-~~~~~~~~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il---~~~~ 663 (975)
. .++++.||...+++.|+.+++...+ |- -.+.++|+++..+++.. -.-..+.+.++|++..-. ..+.
T Consensus 505 E~A~~eLVp~l~~IL~~l~~af~kYQ~KNL------lILYDAIgtlAdsvg~~--Ln~~~YiqiLmPPLi~KW~~lsd~D 576 (885)
T KOG2023|consen 505 EEAGEELVPYLEYILDQLVFAFGKYQKKNL------LILYDAIGTLADSVGHA--LNKPAYIQILMPPLIEKWELLSDSD 576 (885)
T ss_pred HhccchhHHHHHHHHHHHHHHHHHHhhcce------ehHHHHHHHHHHHHHHh--cCcHHHHHHhccHHHHHHHhcCccc
Confidence 4 7888999999999999998887663 31 26889999999998431 233566778888877643 3344
Q ss_pred ccchHHHHHHHHHHHHhcC---CCC-chhHHHHHHhhcCc----------cccc--cCCCccchHHHHHHHHcc---Ccc
Q 002048 664 TEFLPYAFQLLAQLIELNR---PPL-SSNYMQIFNLLLSP----------DSWK--RSSNVPALVRLLQAFLQK---VPR 724 (975)
Q Consensus 664 ~~~~~~~l~ll~~ll~~~~---~~~-~~~~~~lf~~l~~~----------~l~~--~~~~l~~~~~~L~~~i~~---~~~ 724 (975)
.|++| .++.++++..... .|. .|-|...|..+-+. .-.+ +.+++-..++++.+.... +.+
T Consensus 577 KdLfP-LLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie 655 (885)
T KOG2023|consen 577 KDLFP-LLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIE 655 (885)
T ss_pred chHHH-HHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchH
Confidence 45655 2333333333322 122 23333333322210 0011 223566667777777654 234
Q ss_pred chhccCchHHHHHHHHHhhcCCCCc--chHHHHHHHHHHhcchhhHhhhHHHHHHHHHHHhhcCchhhHHHHHHHHHHHH
Q 002048 725 EIAQEGKLREVLGIFNMLVLSPSTD--EQGFYVLNTIVESLEYGVIAQFVPHIWGVLFTRLQNKRTVKFVKSLLIFMSLF 802 (975)
Q Consensus 725 ~~~~~~~~~~il~i~~~ll~~~~~~--~~a~~ll~~ii~~~~~~~~~~~l~~il~~~l~~L~~~~~~~~~~~~i~~~~~~ 802 (975)
.++++ ..++.++-+++.++..| .++|.+++++...+. +++-|++..++..+...+..... +...+-+..+.-+
T Consensus 656 ~Lva~---snl~~lll~C~~D~~peVRQS~FALLGDltk~c~-~~v~p~~~~fl~~lg~Nl~~~~i-sv~nNA~WAiGei 730 (885)
T KOG2023|consen 656 PLVAQ---SNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACF-EHVIPNLADFLPILGANLNPENI-SVCNNAIWAIGEI 730 (885)
T ss_pred HHhhh---ccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH-HhccchHHHHHHHHhhcCChhhc-hHHHHHHHHHHHH
Confidence 45544 23667777787777664 679999999999984 88999999999999877665443 2223333344444
Q ss_pred HHH
Q 002048 803 LVK 805 (975)
Q Consensus 803 ~~~ 805 (975)
+..
T Consensus 731 a~k 733 (885)
T KOG2023|consen 731 ALK 733 (885)
T ss_pred HHH
Confidence 444
No 17
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=5.9e-11 Score=131.32 Aligned_cols=489 Identities=12% Similarity=0.161 Sum_probs=273.7
Q ss_pred HHHHHHHHHhcCC--ChHHHHHHHHHHHHHhcCCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCCCC
Q 002048 9 QHLSQCFLHTLSP--SPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPT 86 (975)
Q Consensus 9 ~~l~~~L~~tls~--d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~~ 86 (975)
+.+.|++.+...| |.+.|+||-+.+.++...|..+..+..++.+.+.+..+|..+.-.|-..++..++
T Consensus 3 ddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyn---------- 72 (980)
T KOG2021|consen 3 DDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYN---------- 72 (980)
T ss_pred hHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhc----------
Confidence 4566777777776 8999999999999999999999999999998877889999999898888876554
Q ss_pred cCCCCHHHHHHHHHHHHHHHh-----cC----CHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccCCChhHHh
Q 002048 87 LAPILDAEKDQIKSLIVGLML-----TS----TPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSIN 157 (975)
Q Consensus 87 ~~~i~~e~K~~Ir~~ll~~l~-----~~----~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~~~~~ 157 (975)
..+..+.+.||..+..-+. .. |.-|++.++.+++...-.+||..||+++.+++..++-+. ......
T Consensus 73 --e~nl~elqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s---~~~~~d 147 (980)
T KOG2021|consen 73 --EANLNELQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDS---AISGLD 147 (980)
T ss_pred --cCCHHHHHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhccc---chhhHH
Confidence 3566788899998875433 33 456999999999999999999999999999999987663 111122
Q ss_pred HHHHHHHHHHHhhhcc--ccchhh-hh--hHHH-HHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHH
Q 002048 158 GILGTANSIFKKFRYQ--FKTNDL-LL--DLKY-CLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRI 231 (975)
Q Consensus 158 ~~L~~l~~i~k~~~~~--~~~~~~-~~--~l~~-il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~ 231 (975)
--+++|..|=.+.... .|+++. +. -+|. +-++-.|.+.+.|-++.....+ .-++. ....|+.+
T Consensus 148 fflkvllaIdsEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n----~~npg-------l~~~cLdc 216 (980)
T KOG2021|consen 148 FFLKVLLAIDSEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYEN----IVNPG-------LINSCLDC 216 (980)
T ss_pred HHHHHHHHhhhHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhc----cCCch-------HHHHHHHH
Confidence 2344444443332211 122221 10 1222 2234556666666665543322 11221 12224444
Q ss_pred hhhc-ccCCCchHHHHhHHHHHHHHHHHhcccCCcccCCCCcCchHHHHHHHHHHHHHHHHHH-----------------
Q 002048 232 FYSL-NFQELPEFFEDHMREWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKM----------------- 293 (975)
Q Consensus 232 ~~~~-~~~~lp~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~~----------------- 293 (975)
+.+. .|.|+.-...| .+++.+.+.++. +.+|..+|.++..++++
T Consensus 217 ~g~fVSWIdInLIaNd---~f~nLLy~fl~i---------------eelR~aac~cilaiVsKkMkP~dKL~lln~L~q~ 278 (980)
T KOG2021|consen 217 IGSFVSWIDINLIAND---YFLNLLYKFLNI---------------EELRIAACNCILAIVSKKMKPMDKLALLNMLNQT 278 (980)
T ss_pred HHHHhhhhhhhhhhch---hHHHHHHHHHhH---------------HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 4443 23333211111 112222222211 12222222222222211
Q ss_pred ---hH---------HHHHhhHHHHHHH-------HHHHH-----------------------hccCCCCcchHHHHHHHH
Q 002048 294 ---NE---------EEFQGYLNDFALA-------VWTLL-----------------------GNVSQSSSRDSLAVTAIK 331 (975)
Q Consensus 294 ---~~---------~~f~~~~~~~~~~-------~~~~l-----------------------~~~~~~~~~~~~~~~~l~ 331 (975)
++ ..|...+...++. +|.-+ .+. ....+|+.-...+.
T Consensus 279 l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~-l~~e~ddit~~ifp 357 (980)
T KOG2021|consen 279 LELFGYHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQF-LNNEFDDITAKIFP 357 (980)
T ss_pred HHHHhhhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHH-hcccchhhHHHHHH
Confidence 00 0111111111111 01100 000 00012333344444
Q ss_pred HHHhh--chhhhhhcc-cCCCchhhHHHHhhcccCCCChhhHHHHhhC-HHHHHhhcCCCCcchhhhHHHHHHHHHHHHH
Q 002048 332 FLTNV--STSVHHTLF-AGEGVIPQICQNIVIPNVRLRDEDEELFEMN-YVEFIRRDMEGSDVDTRRRIACELLKGIATH 407 (975)
Q Consensus 332 fl~~~--~~~~~~~~~-~~~~~l~~l~~~li~~~l~l~~~d~e~we~d-p~efv~~~~d~~d~~s~R~~A~~ll~~L~~~ 407 (975)
||..- .-++++.+- ..+.++..++. .|+.-+|+.++- .|.+| |. +.|+......|.---.|++++...
T Consensus 358 Flsdyl~~LKkl~~ls~~qk~~l~~ill-ai~kqicydemy--~nddn~tg-----~EeEa~f~e~RkkLk~fqdti~~i 429 (980)
T KOG2021|consen 358 FLSDYLAFLKKLKALSSPQKVPLHKILL-AIFKQICYDEMY--FNDDNVTG-----DEEEAFFEEVRKKLKNFQDTIVVI 429 (980)
T ss_pred HHHHHHHHHhhcccccchhhccHHHHHH-HHHHHHhccHHh--hcccCCCC-----chHHHHHHHHHHHHHHHHHHHHhc
Confidence 44432 111221110 01356777776 455777775542 35454 21 011122355677777777888776
Q ss_pred hhhhhHHHHHHHHHHHHHHhcc-CCCCCchhHHHHHHHHHHHHhhhcCCCccccC--------cccHHHHHHHhcccccC
Q 002048 408 YRQHVMETVSVQIQNLLTSFAA-NPVANWKDKDCAIYLVVSLATKKAGSTSISTD--------LVDVQSFFTSVIVPELQ 478 (975)
Q Consensus 408 ~~~~~~~~l~~~i~~~l~~~~~-~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~--------~~~~~~~l~~~v~p~l~ 478 (975)
-|+. ++..|.+.++.... .+.++|..-|.|++.+-.+++.++......++ +.+++..+.+-- +
T Consensus 430 dpsl----~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsq---v- 501 (980)
T KOG2021|consen 430 DPSL----FLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQ---V- 501 (980)
T ss_pred CHHH----HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcc---c-
Confidence 6643 44555555544433 34567999999999999998877322111111 122333332211 1
Q ss_pred CCCCCCcchhHhhHHHHHHHhhccCC--HhHHHhHHHHHHH--hhcCCCchHHHHHHHHHHHHHccccCCCccccccccc
Q 002048 479 SPDVNAFPMLKAGALKFFTMFRIQIP--KIHAFQFFPDLVR--FLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADI 554 (975)
Q Consensus 479 ~~~~~~~~~Lr~ra~~~l~~f~~~~~--~~~~~~~~~~l~~--~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l 554 (975)
+. .+|+.+.---+..+.+|...++ ++..+.++.+.+. .|.+.+.-||..|++-..||+..- +..+
T Consensus 502 -~~-h~h~lVqLlfmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlL---------kkql 570 (980)
T KOG2021|consen 502 -LA-HDHELVQLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLL---------KKQL 570 (980)
T ss_pred -cc-CCchHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHH---------HHHH
Confidence 11 2588888888888888877553 3444444444432 344568899999999999988753 4578
Q ss_pred cchHHHHHHHHHHhc
Q 002048 555 TPYLSVLMTSLFNAF 569 (975)
Q Consensus 555 ~p~l~~il~~L~~ll 569 (975)
.||+..+++.+-.++
T Consensus 571 vpfie~iln~iqdlL 585 (980)
T KOG2021|consen 571 VPFIEEILNKIQDLL 585 (980)
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999999988
No 18
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=99.38 E-value=1.4e-12 Score=109.75 Aligned_cols=76 Identities=28% Similarity=0.561 Sum_probs=67.2
Q ss_pred HHHHHHHHhcC-CChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHh
Q 002048 29 AERSLAEMADR-PNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPTLAPILDAEKDQIKSLIVGLML 107 (975)
Q Consensus 29 AE~~L~~~~~~-p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~~~~~i~~e~K~~Ir~~ll~~l~ 107 (975)
||++|++++++ |||+..|++|+.+++.+..+|++|+++|||.|+++|+..... .|..+++++|..||+.|+++|+
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~----~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQK----GWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHH----HHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhcc----CCCCCCHHHHHHHHHHHHHHHc
Confidence 89999999999 999999999999988899999999999999999999843211 0346999999999999999986
Q ss_pred c
Q 002048 108 T 108 (975)
Q Consensus 108 ~ 108 (975)
+
T Consensus 77 ~ 77 (77)
T PF03810_consen 77 Q 77 (77)
T ss_dssp C
T ss_pred C
Confidence 3
No 19
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=8.1e-07 Score=99.84 Aligned_cols=563 Identities=15% Similarity=0.173 Sum_probs=299.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhc--CCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCCC---
Q 002048 11 LSQCFLHTLSPSPEPRRAAERSLAEMAD--RPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGP--- 85 (975)
Q Consensus 11 l~~~L~~tls~d~~~r~~AE~~L~~~~~--~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~--- 85 (975)
|.++|.+.-++ ...|..|--+||..-. .|.--..+.+--. +.+.++|. +.|++|.+--....+.+...
T Consensus 40 Ls~vl~n~~~~-~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl--~l~~e~re----qVK~~il~tL~~~ep~~~s~Aaq 112 (859)
T KOG1241|consen 40 LSEVLANDNSS-DVARMAAGLQLKNSLTAKDPERKQQYQQRWL--QLPAEIRE----QVKNNILRTLGSPEPRRPSSAAQ 112 (859)
T ss_pred HHHHHhccCCc-HHHHHHHhHHHhhhhccCCHHHHHHHHHHHH--cCCHHHHH----HHHHHHHHHcCCCCCCccchHHH
Confidence 44444444443 3589999999996543 5553333333333 35667776 77888887666433332100
Q ss_pred -----CcCCCCHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcccCCC----CCCchHHHHHHHhcccccCCChhH
Q 002048 86 -----TLAPILDAEKDQIKSLIVGLMLTST-PRIQSQLSEALVVVGNHDFPK----HWPTLLPELIANLKDAAQSNNYVS 155 (975)
Q Consensus 86 -----~~~~i~~e~K~~Ir~~ll~~l~~~~-~~ir~qla~~i~~Ia~~D~P~----~Wp~Ll~~l~~~l~~~~~~~d~~~ 155 (975)
--..||...=..+-..++....+++ ..++....++|+.|...=-|+ +-.+.+-.+++-.+..+ ++.+.
T Consensus 113 ~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e--~s~~v 190 (859)
T KOG1241|consen 113 CVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEE--TSAAV 190 (859)
T ss_pred HHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccC--CchhH
Confidence 0012444433444444555544444 459999999999999876664 23444445555444332 25556
Q ss_pred HhHHHHHHHHHHHhhhccccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhc
Q 002048 156 INGILGTANSIFKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSL 235 (975)
Q Consensus 156 ~~~~L~~l~~i~k~~~~~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~ 235 (975)
+..|+.+|+--.+--+..|..+. |-+++++.++. ..+ +++.+....++.|+--++..||..
T Consensus 191 RLaa~~aL~nsLef~~~nF~~E~---ern~iMqvvcE------------atq----~~d~~i~~aa~~ClvkIm~LyY~~ 251 (859)
T KOG1241|consen 191 RLAALNALYNSLEFTKANFNNEM---ERNYIMQVVCE------------ATQ----SPDEEIQVAAFQCLVKIMSLYYEF 251 (859)
T ss_pred HHHHHHHHHHHHHHHHHhhccHh---hhceeeeeeee------------ccc----CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777664432222222121 11223332221 001 445666667777776666666543
Q ss_pred ccCCCchHHHHhHHHHHHH--HHHHhcccCCcccCCCCcCchHHHHHHHHHHHHH-------HHHHHhHHHHHh------
Q 002048 236 NFQELPEFFEDHMREWMTE--FKKYLTTNYPALESTSDGLGLVDGLRAAVCENIS-------LYMKMNEEEFQG------ 300 (975)
Q Consensus 236 ~~~~lp~~~~~~~~~~~~~--~~~~l~~~~~~l~~~~~~~~~~~~~k~~~~~~l~-------~~~~~~~~~f~~------ 300 (975)
|.++|.- |-..+.. +.+++ ++++.+..+.-. .+...|++.+..
T Consensus 252 ------------m~~yM~~alfaitl~a----mks~~------deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~ 309 (859)
T KOG1241|consen 252 ------------MEPYMEQALFAITLAA----MKSDN------DEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSS 309 (859)
T ss_pred ------------HHHHHHHHHHHHHHHH----HcCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchh
Confidence 3333321 2222221 11111 123333333322 222233333321
Q ss_pred ------hHHHHHHHHHHHHhccCCCCcc-----hHHHHHHHHHHHhh-chhhhhhcccCCCchhhHHHHhhcccCCCChh
Q 002048 301 ------YLNDFALAVWTLLGNVSQSSSR-----DSLAVTAIKFLTNV-STSVHHTLFAGEGVIPQICQNIVIPNVRLRDE 368 (975)
Q Consensus 301 ------~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~l~fl~~~-~~~~~~~~~~~~~~l~~l~~~li~~~l~l~~~ 368 (975)
-++..++.+++++.+-+..+.. -+-..-|+..+..+ ..... +++- |
T Consensus 310 ~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv-------~~Vl--------~------- 367 (859)
T KOG1241|consen 310 KYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIV-------PHVL--------P------- 367 (859)
T ss_pred hHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccch-------hhhH--------H-------
Confidence 2235566666666663332222 23556677777776 32211 1111 1
Q ss_pred hHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHH
Q 002048 369 DEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHY-RQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVS 447 (975)
Q Consensus 369 d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~~~-~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ 447 (975)
||.+.+. ++.+--|.+|.--+.+..+.. ++..++.+-+.+..+++.- .+| ..|- ||++=+.+|.
T Consensus 368 -----------Fiee~i~-~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm-~D~-sl~V-kdTaAwtlgr 432 (859)
T KOG1241|consen 368 -----------FIEENIQ-NPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLM-SDP-SLWV-KDTAAWTLGR 432 (859)
T ss_pred -----------HHHHhcC-CcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHh-cCc-hhhh-cchHHHHHHH
Confidence 1211111 122334666666666666554 2344455444444444322 132 2344 4888899999
Q ss_pred HHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCC----H----hHHHhHHHHHHHhh
Q 002048 448 LATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIP----K----IHAFQFFPDLVRFL 519 (975)
Q Consensus 448 ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~----~----~~~~~~~~~l~~~L 519 (975)
+++.+.+..- +.... +-..+.++..+++ +|.+-..+||.+.-++++.. . +.....|+.+++.|
T Consensus 433 I~d~l~e~~~---n~~~l-~~~l~~l~~gL~D-----ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~L 503 (859)
T KOG1241|consen 433 IADFLPEAII---NQELL-QSKLSALLEGLND-----EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSL 503 (859)
T ss_pred HHhhchhhcc---cHhhh-hHHHHHHHHHhhh-----CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHH
Confidence 9987733211 11111 2222344445553 89999999999988764321 0 11223444444443
Q ss_pred ----c--C-CCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcC-----CCCch---hhH-HHHHH
Q 002048 520 ----G--A-ESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFK-----FPESE---ENQ-YIMKC 583 (975)
Q Consensus 520 ----~--~-~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~-----~~~~~---~~~-~l~~~ 583 (975)
+ | ++.-.|..|-.||..++.+... -....+.....-++.+|-+.++ ..+.. +.+ .+..+
T Consensus 504 l~~tdr~dgnqsNLR~AAYeALmElIk~st~-----~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~ 578 (859)
T KOG1241|consen 504 LKVTDRADGNQSNLRSAAYEALMELIKNSTD-----DVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNT 578 (859)
T ss_pred HhhccccccchhhHHHHHHHHHHHHHHcCcH-----HHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHH
Confidence 2 2 3677899999999998876421 1112233444455555555554 11111 222 45667
Q ss_pred HHHHHh-hccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhcc
Q 002048 584 IMRVLG-VAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQND 662 (975)
Q Consensus 584 l~~vi~-~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~ 662 (975)
+..++. ++.++.+++++++..+..+++. +.....-...|=.+++++.+++ ..+.++.+.+.|++..-|++.
T Consensus 579 Lq~i~rk~~~~~~~~~d~iM~lflri~~s----~~s~~v~e~a~laV~tl~~~Lg----~~F~kym~~f~pyL~~gL~n~ 650 (859)
T KOG1241|consen 579 LQSIIRKVGSDIREVSDQIMGLFLRIFES----KRSAVVHEEAFLAVSTLAESLG----KGFAKYMPAFKPYLLMGLSNF 650 (859)
T ss_pred HHHHHHHccccchhHHHHHHHHHHHHHcC----CccccchHHHHHHHHHHHHHHh----HhHHHHHHHHHHHHHHHhhcc
Confidence 778888 8888888888888877776643 1111122367778889998873 457889999999999888653
Q ss_pred cc--------------------cchHHHHHHHHHHHHhcC
Q 002048 663 VT--------------------EFLPYAFQLLAQLIELNR 682 (975)
Q Consensus 663 ~~--------------------~~~~~~l~ll~~ll~~~~ 682 (975)
.+ +|.||+=++++.+++...
T Consensus 651 ~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Ls 690 (859)
T KOG1241|consen 651 QEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLS 690 (859)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHcc
Confidence 22 577888788887777643
No 20
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=2.7e-07 Score=100.98 Aligned_cols=438 Identities=13% Similarity=0.137 Sum_probs=246.4
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHH
Q 002048 27 RAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPTLAPILDAEKDQIKSLIVGLM 106 (975)
Q Consensus 27 ~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~~~~~i~~e~K~~Ir~~ll~~l 106 (975)
.+|-..|.++++.+.-+..+-.|+... .+...-.+|+-.+||+|+...+ .+|+.+-...|+.++..+
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~-~~~~~~~FaaqTlr~Ki~~~F~------------~Lp~~~~~slrdsl~thl 68 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQK-CDVEALLFAAQTLRNKIQYDFS------------ELPPLTHASLRDSLITHL 68 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHhhHH------------hcCcchhHHHHHHHHHHH
Confidence 468889999999999898888888775 6899999999999999999886 466766677777666554
Q ss_pred hc---CCHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccCCChhHHhHHHHHHHHHHHhhhccccchhh---h
Q 002048 107 LT---STPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSIFKKFRYQFKTNDL---L 180 (975)
Q Consensus 107 ~~---~~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i~k~~~~~~~~~~~---~ 180 (975)
.. .++.+++|++.+|+.+|-+- | +|.+-++++++.+++. .+ +..++.++++...++.++.+. -
T Consensus 69 ~~l~~~~~~i~tQL~vavA~Lal~~-~-~W~n~I~e~v~~~~~~----~~-----~~~~lLeiL~VlPEE~~~~~~~~~a 137 (559)
T KOG2081|consen 69 KELHDHPDVIRTQLAVAVAALALHM-P-EWVNPIFELVRALSNK----HP-----AVPILLEILKVLPEETRDIRLTVGA 137 (559)
T ss_pred HHHHhCCchHHHHHHHHHHHHHHHh-H-hhcchHHHHHHHhhcC----Cc-----cHHHHHHHHHhCcHhhcchhhhhhh
Confidence 43 33489999999999999874 4 8999888888888766 33 233444444433322111111 0
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhccc--CCCchHHHHh-----------
Q 002048 181 LDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNF--QELPEFFEDH----------- 247 (975)
Q Consensus 181 ~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~--~~lp~~~~~~----------- 247 (975)
.....+.....+.-...+..+...+... +.+. ...+..++|++.+... .-.|+.+...
T Consensus 138 ~Rr~e~~~~l~~~~~~~L~~l~~lLe~~---~l~~------~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl 208 (559)
T KOG2081|consen 138 NRRHEFIDELAAQVSKVLVFLSDLLERS---DLKS------SDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSL 208 (559)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHhhc---CCCh------hhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHc
Confidence 0112233333333333333333333332 2221 1233446666666532 1122222211
Q ss_pred ---------HHHHHHHHHHHhccc------------CCcc------c-CCCCcCchHHHHHHHHHHHHHHHHHHhHHHHH
Q 002048 248 ---------MREWMTEFKKYLTTN------------YPAL------E-STSDGLGLVDGLRAAVCENISLYMKMNEEEFQ 299 (975)
Q Consensus 248 ---------~~~~~~~~~~~l~~~------------~~~l------~-~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~f~ 299 (975)
.+-...++....... .+.+ . ..+| ..+ ...+++++..+.+.|.....
T Consensus 209 ~~~~lhe~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d----~d~-~~a~~RIFtel~eaf~~~i~ 283 (559)
T KOG2081|consen 209 SDDELHEEATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGED----LDK-NEAICRIFTELGEAFVVLIS 283 (559)
T ss_pred ccchhhHHHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccC----HHH-HHHHHHHHHHHHHHHHHHHh
Confidence 111111111111100 0000 0 0111 011 11344444444433332221
Q ss_pred hhHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHhh-ch------hhhhhcccCCCchhhHHHHhhcccCCCChhhHHH
Q 002048 300 GYLNDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNV-ST------SVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEEL 372 (975)
Q Consensus 300 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~fl~~~-~~------~~~~~~~~~~~~l~~l~~~li~~~l~l~~~d~e~ 372 (975)
..-..|+..+-.++.-.+ . ...+++...+.||... +. ..+..+| +|....++.. +.+..++.+ |.+.
T Consensus 284 ~np~~~l~~vellLl~~~-h-~~~evie~SF~fW~~lse~l~~~~~~~~~~~f--rpy~~rLvs~-l~~h~qlp~-~~~~ 357 (559)
T KOG2081|consen 284 TNPEEFLRIVELLLLVAG-H-NDTEVIEASFNFWYSLSEELTLTDDDEALGIF--RPYFLRLVSL-LKRHVQLPP-DQFD 357 (559)
T ss_pred hCCCcchhHHHHHHHhcc-C-CchhhhhhhHHhhhhhHHHHhccccHHHHHHh--HHHHHHHHHH-HHHHccCCC-cccc
Confidence 111123333322222222 1 1237889999999987 21 2334566 7888888874 457777776 3332
Q ss_pred HhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhh
Q 002048 373 FEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQ-HVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATK 451 (975)
Q Consensus 373 we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~~~~~-~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~ 451 (975)
.-++ .+++.--|....+++++.+.-.|+ .++.. +...+.+ |+..|..-||+++.+..++..
T Consensus 358 l~Ee----------~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~----~~~~l~e----~~~~We~~EAaLF~l~~~~~~ 419 (559)
T KOG2081|consen 358 LPEE----------ESEFFEFRLKVGDVLKDVAFIIGSDECLKQ----MYIRLKE----NNASWEEVEAALFILRAVAKN 419 (559)
T ss_pred Cccc----------hhHHHHHHHHHHHHHHHHHHHhCcHHHHHH----HHHHHcc----CCCchHHHHHHHHHHHHHhcc
Confidence 2121 234555688888999998877664 33322 2223322 356799999999999999865
Q ss_pred hcCCCccccCcccHHHHHHHhcccccC-CCCCCCcchhHhhHHHHHHHhhccC--CHhHHHhHHHHHHHhhcCCCchHHH
Q 002048 452 KAGSTSISTDLVDVQSFFTSVIVPELQ-SPDVNAFPMLKAGALKFFTMFRIQI--PKIHAFQFFPDLVRFLGAESNVVHS 528 (975)
Q Consensus 452 ~~~g~~~~~~~~~~~~~l~~~v~p~l~-~~~~~~~~~Lr~ra~~~l~~f~~~~--~~~~~~~~~~~l~~~L~~~~~~V~~ 528 (975)
.... +..-+...+ ..+. -+. +.| +|+.++..+|.+.+++ .|+.+..+...+...++... ...
T Consensus 420 ~~~~-----e~~i~pevl-----~~i~nlp~--Q~~-~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as 484 (559)
T KOG2081|consen 420 VSPE-----ENTIMPEVL-----KLICNLPE--QAP-LRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LAS 484 (559)
T ss_pred CCcc-----ccchHHHHH-----HHHhCCcc--chh-HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhH
Confidence 4211 011122222 1222 221 334 9999999999999876 36778888888888887655 566
Q ss_pred HHHHHHHHHHccc
Q 002048 529 YAASCIEKLLQVK 541 (975)
Q Consensus 529 ~Aa~aL~~~~~~~ 541 (975)
.|+.|..+++..+
T Consensus 485 ~~a~~~~~i~~~c 497 (559)
T KOG2081|consen 485 AAALAFHRICSAC 497 (559)
T ss_pred HHHHHHHHHHHHH
Confidence 6777777777654
No 21
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.09 E-value=7.8e-05 Score=86.05 Aligned_cols=580 Identities=13% Similarity=0.196 Sum_probs=278.2
Q ss_pred HHHHHhcCCChHHHHHHHHHHH-HHhc---------CCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCC
Q 002048 13 QCFLHTLSPSPEPRRAAERSLA-EMAD---------RPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRN 82 (975)
Q Consensus 13 ~~L~~tls~d~~~r~~AE~~L~-~~~~---------~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~ 82 (975)
+++....|+|.+.|=-|..-|. ++++ .+.....|++.+.+.+ ..|.++|.=++-=.++
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~n--gEVQnlAVKClg~lvs---------- 76 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKN--GEVQNLAVKCLGPLVS---------- 76 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccC--cHHHHHHHHHHHHHHh----------
Confidence 7888999999999999988776 4543 3567888899988864 3344444433332221
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCC--------CCCCchHHHHHHHhcccccCCCh-
Q 002048 83 SGPTLAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFP--------KHWPTLLPELIANLKDAAQSNNY- 153 (975)
Q Consensus 83 ~~~~~~~i~~e~K~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P--------~~Wp~Ll~~l~~~l~~~~~~~d~- 153 (975)
.++++.-+.+-++|...|++..++.|---+..+......=-| .-.|.+.|.+.+.+...+ +.
T Consensus 77 ------Kvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe---~~s 147 (1233)
T KOG1824|consen 77 ------KVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQE---DVS 147 (1233)
T ss_pred ------hchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcc---cch
Confidence 367777788889999998887666554444444433332222 223344455555443321 21
Q ss_pred hHHhHHHHHHHHHHHhhhccccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhh
Q 002048 154 VSINGILGTANSIFKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFY 233 (975)
Q Consensus 154 ~~~~~~L~~l~~i~k~~~~~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~ 233 (975)
...--+|..+..+.-+|.. ++..|.+.++. -...++..+ ....++.+..+ +.
T Consensus 148 ai~~e~lDil~d~lsr~g~-------------ll~~fh~~il~---~l~~ql~s~-----R~aVrKkai~~-------l~ 199 (1233)
T KOG1824|consen 148 AIKCEVLDILADVLSRFGT-------------LLPNFHLSILK---CLLPQLQSP-----RLAVRKKAITA-------LG 199 (1233)
T ss_pred hhHHHHHHHHHHHHHhhcc-------------cCcchHHHHHH---HHhhcccCh-----HHHHHHHHHHH-------HH
Confidence 1222334444444433321 12222222222 112122111 11222332221 11
Q ss_pred hcccCCCchHHHHhHHHHHHHHHHHhcccCCcccCCCCcCchHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 002048 234 SLNFQELPEFFEDHMREWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQGYLNDFALAVWTLL 313 (975)
Q Consensus 234 ~~~~~~lp~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~l 313 (975)
++.. ..|. +......+.+.+-|..+ + . -..++ -..+++..+...-+..|..|.+..+..+.+.+
T Consensus 200 ~la~-~~~~---~ly~~li~~Ll~~L~~~-~--------q--~~~~r-t~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~ 263 (1233)
T KOG1824|consen 200 HLAS-SCNR---DLYVELIEHLLKGLSNR-T--------Q--MSATR-TYIQCLAAICRQAGHRFGSHLDKIVPLVADYC 263 (1233)
T ss_pred HHHH-hcCH---HHHHHHHHHHHhccCCC-C--------c--hHHHH-HHHHHHHHHHHHhcchhhcccchhhHHHHHHh
Confidence 1110 0111 11122222222222211 0 0 01222 23344554444444566777777777777777
Q ss_pred hccCCCCcchHHHHHHHHHHHhh--chhhhhhcccCCCchhhHHHHhh-----cccCCCCh--hhHHHHhhCHHHHH-hh
Q 002048 314 GNVSQSSSRDSLAVTAIKFLTNV--STSVHHTLFAGEGVIPQICQNIV-----IPNVRLRD--EDEELFEMNYVEFI-RR 383 (975)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~fl~~~--~~~~~~~~~~~~~~l~~l~~~li-----~~~l~l~~--~d~e~we~dp~efv-~~ 383 (975)
.+. +...|++..++++-+... .++. .+ .++.++++...+ =|+.-... ++.+.+.+|-+.+- .+
T Consensus 264 ~~~--e~~dDELrE~~lQale~fl~rcp~--ei---~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~d 336 (1233)
T KOG1824|consen 264 NKI--EEDDDELREYCLQALESFLRRCPK--EI---LPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDD 336 (1233)
T ss_pred ccc--ccCcHHHHHHHHHHHHHHHHhChh--hh---cccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhcc
Confidence 654 234677777777777665 2332 33 356666654322 13443332 22333433332221 11
Q ss_pred cC--CCCcchhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccC
Q 002048 384 DM--EGSDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTD 461 (975)
Q Consensus 384 ~~--d~~d~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~ 461 (975)
++ |++-+|-+|+||..++.++...+.+.+ +.+.+.+...+- ...+.||--..
T Consensus 337 eYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L-~~~~q~l~p~lI-------~RfkEREEnVk------------------ 390 (1233)
T KOG1824|consen 337 EYSDDEDMSWKVRRAAAKCLEAVISSRLEML-PDFYQTLGPALI-------SRFKEREENVK------------------ 390 (1233)
T ss_pred ccccccchhHHHHHHHHHHHHHHHhccHHHH-HHHHHHhCHHHH-------HHHHHHhhhHH------------------
Confidence 21 223368899999999999887766533 333322221110 00122221111
Q ss_pred cccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHH-HHHHHHHcc
Q 002048 462 LVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAA-SCIEKLLQV 540 (975)
Q Consensus 462 ~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa-~aL~~~~~~ 540 (975)
..++...+.+|.....++..++- .+.++
T Consensus 391 -----------------------------------------------~dvf~~yi~ll~qt~~~~~~~~d~d~~e~---- 419 (1233)
T KOG1824|consen 391 -----------------------------------------------ADVFHAYIALLKQTRPVIEVLADNDAMEQ---- 419 (1233)
T ss_pred -----------------------------------------------HHHHHHHHHHHHcCCCCcccccCchhhhc----
Confidence 11111111112111111111110 00010
Q ss_pred ccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHhCCCCC
Q 002048 541 KDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG-VAEISNEVAAPCISGLTSILNEVCKNPKSP 619 (975)
Q Consensus 541 ~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~ 619 (975)
+.+.++...+..-.+-|++.+-+-+++-.-....-....+..++. +.+...++.+.+++.+.-.+. +-.
T Consensus 420 ----~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~------DkS 489 (1233)
T KOG1824|consen 420 ----GGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLN------DKS 489 (1233)
T ss_pred ----cCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcC------Ccc
Confidence 001122233333344444444444432111111111222334444 556666665555554433221 111
Q ss_pred chhHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhcccccchHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCc
Q 002048 620 IFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSP 699 (975)
Q Consensus 620 ~~~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~~~~~~~~~~~~lf~~l~~~ 699 (975)
.....-.+.+.-+...++...|+.+..+.+.+.|++.....+.-.....+++-....+++.-.. .. .+
T Consensus 490 sss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirp-l~-----------~~ 557 (1233)
T KOG1824|consen 490 SSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRP-LQ-----------PP 557 (1233)
T ss_pred chHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcc-cC-----------CC
Confidence 1122455566666666656678888889999999988877664333445666666655554221 10 00
Q ss_pred cccccCCCccchHHHHHHHHccCccchhccCchHHHHHHHHHhhcCCCCc----chHHHHHHHHHHhcchhhHhhhHHHH
Q 002048 700 DSWKRSSNVPALVRLLQAFLQKVPREIAQEGKLREVLGIFNMLVLSPSTD----EQGFYVLNTIVESLEYGVIAQFVPHI 775 (975)
Q Consensus 700 ~l~~~~~~l~~~~~~L~~~i~~~~~~~~~~~~~~~il~i~~~ll~~~~~~----~~a~~ll~~ii~~~~~~~~~~~l~~i 775 (975)
. .|-.+++...++....+.+.....| ..|..+++.++-+++ +.....+|.+
T Consensus 558 ~------------------------~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg-D~l~~eL~~~ 612 (1233)
T KOG1824|consen 558 S------------------------SFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFG-DFLGNELPRT 612 (1233)
T ss_pred c------------------------cCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh-hhhhhhhHHH
Confidence 0 0111235556665444444444444 457888899998985 7788899999
Q ss_pred HHHHHHHhhcCch
Q 002048 776 WGVLFTRLQNKRT 788 (975)
Q Consensus 776 l~~~l~~L~~~~~ 788 (975)
+..++.||++.-|
T Consensus 613 L~il~eRl~nEiT 625 (1233)
T KOG1824|consen 613 LPILLERLGNEIT 625 (1233)
T ss_pred HHHHHHHHhchhH
Confidence 9999999998655
No 22
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=4.4e-07 Score=109.32 Aligned_cols=128 Identities=24% Similarity=0.453 Sum_probs=111.6
Q ss_pred hHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHhcCCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCC
Q 002048 7 TLQHLSQCFLHTLSP--SPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSG 84 (975)
Q Consensus 7 ~~~~l~~~L~~tls~--d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~ 84 (975)
...+++.++..+++| ++..|.+|.+.|.++...|.-+.....|+... ....+|..|.=+|-|.|+.+|+
T Consensus 8 l~~~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~s-~~~~~k~f~Lqlle~vik~~W~-------- 78 (1041)
T KOG2020|consen 8 LDSELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKLS-TNPILKYFALQLLENVIKFRWN-------- 78 (1041)
T ss_pred HHHHHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhcc-CCchhheeeHHHHHHHHHHhcc--------
Confidence 346788888888887 67899999999999999999888888888875 4668999999999999999998
Q ss_pred CCcCCCCHHHHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhccc
Q 002048 85 PTLAPILDAEKDQIKSLIVGLMLTST---------PRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDA 147 (975)
Q Consensus 85 ~~~~~i~~e~K~~Ir~~ll~~l~~~~---------~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~ 147 (975)
.+|.++|..+|..++..+.... +.++..++..+..|++.|||+.||++++++.+....+
T Consensus 79 ----~~~~~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~s 146 (1041)
T KOG2020|consen 79 ----SLPVEERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKTS 146 (1041)
T ss_pred ----cCCccccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhcC
Confidence 5889999999999998877631 2388999999999999999999999999999998755
No 23
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.83 E-value=0.00044 Score=75.70 Aligned_cols=369 Identities=11% Similarity=0.122 Sum_probs=202.7
Q ss_pred cchhhhHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHH
Q 002048 389 DVDTRRRIACELLKGIATHYRQHV-METVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQS 467 (975)
Q Consensus 389 d~~s~R~~A~~ll~~L~~~~~~~~-~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~ 467 (975)
+.+--|.+|.--+.+..+-..+.. ++.+-+.+...++.- .+ .-...|+.+-.++|.+++....-. ++...+..
T Consensus 378 ~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m-~D--~~l~vk~ttAwc~g~iad~va~~i---~p~~Hl~~ 451 (858)
T COG5215 378 ESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEM-SD--SCLWVKSTTAWCFGAIADHVAMII---SPCGHLVL 451 (858)
T ss_pred chhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhc-cc--ceeehhhHHHHHHHHHHHHHHHhc---CccccccH
Confidence 445567787777777776543332 233323333322221 11 223345555567999998762211 11122222
Q ss_pred HHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCH------hHHHhHHHHHHHhhc------CCCchHHHHHHHHHH
Q 002048 468 FFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPK------IHAFQFFPDLVRFLG------AESNVVHSYAASCIE 535 (975)
Q Consensus 468 ~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~------~~~~~~~~~l~~~L~------~~~~~V~~~Aa~aL~ 535 (975)
..... +-.+.+ +|+.-..++|....+.+++.+ ..+...|+.+++.|- +++.-.|+.+-.||.
T Consensus 452 ~vsa~-liGl~D-----~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLg 525 (858)
T COG5215 452 EVSAS-LIGLMD-----CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALG 525 (858)
T ss_pred HHHHH-Hhhhhc-----cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 22222 223443 899999999999998887743 346667777766552 356778888999999
Q ss_pred HHHccccCCCccccccccccchHHHH----HHHHHHhcCCCC-----ch-----h-hHHHHHHHHHHHh-hccchhhhHH
Q 002048 536 KLLQVKDEGGKSRYNSADITPYLSVL----MTSLFNAFKFPE-----SE-----E-NQYIMKCIMRVLG-VAEISNEVAA 599 (975)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~l~p~l~~i----l~~L~~ll~~~~-----~~-----~-~~~l~~~l~~vi~-~~~~i~p~~~ 599 (975)
.++..+ ++.+.|.+..+ +.+|-..++--+ ++ + ...++..+..++. .+.++.|..+
T Consensus 526 tli~~~---------~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D 596 (858)
T COG5215 526 TLILIC---------PDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVED 596 (858)
T ss_pred HHHhhc---------chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHH
Confidence 988865 33444444333 333333331111 00 1 1133455556666 7788888777
Q ss_pred HHHHHHHHHHHHHHhCCCCCchh-HHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhccc---------------
Q 002048 600 PCISGLTSILNEVCKNPKSPIFN-HYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDV--------------- 663 (975)
Q Consensus 600 ~l~~~L~~~l~~~~~~~~~~~~~-~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~~--------------- 663 (975)
+++..+..++... +|.+. ..++-+|+.+..++ .+-+.++.+.+.|++...|....
T Consensus 597 ~lm~Lf~r~les~-----~~t~~~~dV~~aIsal~~sl----~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdla 667 (858)
T COG5215 597 QLMELFIRILEST-----KPTTAFGDVYTAISALSTSL----EERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLA 667 (858)
T ss_pred HHHHHHHHHHhcc-----CCchhhhHHHHHHHHHHHHH----HHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 7777766655321 34443 45778888888776 24678888999999998774321
Q ss_pred ----ccchHHHHHHHHHHHHhcCC-----CCchhHHHHHHhhcCccccccC-CCccchH---------------------
Q 002048 664 ----TEFLPYAFQLLAQLIELNRP-----PLSSNYMQIFNLLLSPDSWKRS-SNVPALV--------------------- 712 (975)
Q Consensus 664 ----~~~~~~~l~ll~~ll~~~~~-----~~~~~~~~lf~~l~~~~l~~~~-~~l~~~~--------------------- 712 (975)
.+|.+|+=.+++.+++...+ .+.|...+.|.-+-... ..+. .|+..++
T Consensus 668 ntl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlai-ga~F~~YL~~im~L~qqas~~~p~~~~~~~~dy 746 (858)
T COG5215 668 NTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAI-GANFESYLDMIMMLFQQASELDPHSDEVYVDDY 746 (858)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHhccCCCCCceeHHHH
Confidence 16777777777777665322 46666666665542211 0000 1222222
Q ss_pred ------HHHHHHHccCccc---hhc-cCchHHHHHHHHHhhcCCCC-c---chHHHHHHHHHHhcchhhH-----hhhHH
Q 002048 713 ------RLLQAFLQKVPRE---IAQ-EGKLREVLGIFNMLVLSPST-D---EQGFYVLNTIVESLEYGVI-----AQFVP 773 (975)
Q Consensus 713 ------~~L~~~i~~~~~~---~~~-~~~~~~il~i~~~ll~~~~~-~---~~a~~ll~~ii~~~~~~~~-----~~~l~ 773 (975)
-+.++|+-.+... .-. -||+..++..+...-.+..- + ..+..|++++..-+|++.+ .+|+.
T Consensus 747 ~~~~~~~v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfpkgelk~~~~~dWv~ 826 (858)
T COG5215 747 RKNAVQLVNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPKGELKFGLDEDWVK 826 (858)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCCcchhhccchHHHH
Confidence 2333443322110 000 03444444444433233222 2 2467899999999987643 35677
Q ss_pred HHHHHHHHHhhcCch
Q 002048 774 HIWGVLFTRLQNKRT 788 (975)
Q Consensus 774 ~il~~~l~~L~~~~~ 788 (975)
+++..+.+++.+..|
T Consensus 827 d~l~~~~~ki~sqqt 841 (858)
T COG5215 827 DFLYGMMKKISSQQT 841 (858)
T ss_pred HHHHHHHHHhhhhhc
Confidence 777777776655444
No 24
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.63 E-value=0.0021 Score=74.72 Aligned_cols=493 Identities=13% Similarity=0.143 Sum_probs=255.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccCCChhHHhHHHHHHHHHHHhhhccccchhhh
Q 002048 101 LIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSIFKKFRYQFKTNDLL 180 (975)
Q Consensus 101 ~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i~k~~~~~~~~~~~~ 180 (975)
.++..+.++-..||+..+.+++.++..---+-+.++++.+..-+.++. ++..++....+|..|++.-...+.+
T Consensus 178 ~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~---q~~~~rt~Iq~l~~i~r~ag~r~~~---- 250 (1233)
T KOG1824|consen 178 CLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRT---QMSATRTYIQCLAAICRQAGHRFGS---- 250 (1233)
T ss_pred HHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCC---chHHHHHHHHHHHHHHHHhcchhhc----
Confidence 333333333356999999999999987432446678888888887664 6667788889999999854332111
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhcccCCCchHHHHhHHHHHHHHHHHhc
Q 002048 181 LDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFEDHMREWMTEFKKYLT 260 (975)
Q Consensus 181 ~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~~~lp~~~~~~~~~~~~~~~~~l~ 260 (975)
. ++.+. +++.+..+.+ + ..+.+.+...++ ++..|-.- -|..+-.+.+...+....++.
T Consensus 251 -h----~~~iv----p~v~~y~~~~-e----~~dDELrE~~lQ----ale~fl~r----cp~ei~p~~pei~~l~l~yis 308 (1233)
T KOG1824|consen 251 -H----LDKIV----PLVADYCNKI-E----EDDDELREYCLQ----ALESFLRR----CPKEILPHVPEIINLCLSYIS 308 (1233)
T ss_pred -c----cchhh----HHHHHHhccc-c----cCcHHHHHHHHH----HHHHHHHh----ChhhhcccchHHHHHHHHHhc
Confidence 1 12222 2222222222 1 222222222211 22222111 133333444555566667776
Q ss_pred ccCCcc-------------c---CCC---C---cCchHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHhc-cC
Q 002048 261 TNYPAL-------------E---STS---D---GLGLVDGLRAAVCENISLYMKMNEEEFQGYLNDFALAVWTLLGN-VS 317 (975)
Q Consensus 261 ~~~~~l-------------~---~~~---~---~~~~~~~~k~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~l~~-~~ 317 (975)
++ |.. . |++ + ....-||+|+.+.+++..+.....+ +++.|.+.+-..+.. ..
T Consensus 309 YD-PNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E----~L~~~~q~l~p~lI~Rfk 383 (1233)
T KOG1824|consen 309 YD-PNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLE----MLPDFYQTLGPALISRFK 383 (1233)
T ss_pred cC-CCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHH----HHHHHHHHhCHHHHHHHH
Confidence 64 211 0 000 0 1234589999999999887765543 233333333222211 10
Q ss_pred CCCcchHHHHHHHHHHHhh--chhhhhhcccC----------------CCchhhHHHHhhcccCCCChhhHHHHhhCHHH
Q 002048 318 QSSSRDSLAVTAIKFLTNV--STSVHHTLFAG----------------EGVIPQICQNIVIPNVRLRDEDEELFEMNYVE 379 (975)
Q Consensus 318 ~~~~~~~~~~~~l~fl~~~--~~~~~~~~~~~----------------~~~l~~l~~~li~~~l~l~~~d~e~we~dp~e 379 (975)
. +.+.+..-.+.-+... ..+.+...... ......|+. .|-+.
T Consensus 384 E--REEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVk-ai~~q----------------- 443 (1233)
T KOG1824|consen 384 E--REENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVK-AIQKQ----------------- 443 (1233)
T ss_pred H--HhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHH-HHHHH-----------------
Confidence 0 1122221111111111 00111101000 111111111 11111
Q ss_pred HHhhcCCCCcchhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccc
Q 002048 380 FIRRDMEGSDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSIS 459 (975)
Q Consensus 380 fv~~~~d~~d~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~ 459 (975)
+| +++--.|.++..+|.+|....|+...+.+-..+.......+.-++.+-..+++..++.+++.....+-+.
T Consensus 444 -lr-----~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fh-- 515 (1233)
T KOG1824|consen 444 -LR-----EKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFH-- 515 (1233)
T ss_pred -Hh-----hccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcc--
Confidence 11 1222257778888999988887766555544444444333222223457788888888777543211111
Q ss_pred cCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccC----------CHhHHHhHHHHHHHhhcC--CCchHH
Q 002048 460 TDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQI----------PKIHAFQFFPDLVRFLGA--ESNVVH 527 (975)
Q Consensus 460 ~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~----------~~~~~~~~~~~l~~~L~~--~~~~V~ 527 (975)
+..+-+...+.....+ +++-+-+-|+.+.++|...+ .+....+++...++.|.. .|.-||
T Consensus 516 ----p~~~~Ls~~v~~aV~d----~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVk 587 (1233)
T KOG1824|consen 516 ----PHLSALSPPVVAAVGD----PFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVK 587 (1233)
T ss_pred ----cchhhhhhHHHHHhcC----chHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHH
Confidence 1222233333333333 57778888888888886432 136788999999999875 489999
Q ss_pred HHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh--hccchhhhHHHHHHHH
Q 002048 528 SYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG--VAEISNEVAAPCISGL 605 (975)
Q Consensus 528 ~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~--~~~~i~p~~~~l~~~L 605 (975)
..|..|+..++..- .+.++..++.++..++.-+.+- ..+-...+++..++. ..=+..|....++..+
T Consensus 588 eraIscmgq~i~~f---------gD~l~~eL~~~L~il~eRl~nE--iTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l 656 (1233)
T KOG1824|consen 588 ERAISCMGQIIANF---------GDFLGNELPRTLPILLERLGNE--ITRLTAVKALTLIAMSPLDIDLSPVLTEILPEL 656 (1233)
T ss_pred HHHHHHHHHHHHHH---------hhhhhhhhHHHHHHHHHHHhch--hHHHHHHHHHHHHHhccceeehhhhHHHHHHHH
Confidence 99999999887753 2455566677777776665441 122234556655554 4444455555666665
Q ss_pred HHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcC-cchHHHHHHhhHHHHHHHHhcccccchHHHHHHHHHHHHhcCC
Q 002048 606 TSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRD-PSLISAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRP 683 (975)
Q Consensus 606 ~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~-~~~~~~l~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~~~~ 683 (975)
...+..... ......+.++..++...+.+- ++.+..+...+.|.|... .--....++.++++++...++
T Consensus 657 ~~flrK~~r-----~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lises----dlhvt~~a~~~L~tl~~~~ps 726 (1233)
T KOG1824|consen 657 ASFLRKNQR-----ALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISES----DLHVTQLAVAFLTTLAIIQPS 726 (1233)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHH----HHHHHHHHHHHHHHHHhcccH
Confidence 554432221 122356777777777763322 223444444445554432 113567889999988877664
No 25
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.61 E-value=4.8e-07 Score=87.16 Aligned_cols=132 Identities=18% Similarity=0.275 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccCCChhHHhHHHHHHHHHHHhhhc-c--ccchhhhhhHHHH
Q 002048 110 TPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSIFKKFRY-Q--FKTNDLLLDLKYC 186 (975)
Q Consensus 110 ~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i~k~~~~-~--~~~~~~~~~l~~i 186 (975)
|+.|++++|.+++.|+.+|||++||++++++++.++++ +.....+|.+|..+.+++.. . ..+.+.+.+++..
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~~-----~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~ 75 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQSS-----PQHLELVLRILRILPEEITDFRRSSLSQERRRELKDA 75 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhccc-----hhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHH
Confidence 46799999999999999999999999999999998754 45677888888888888753 1 1123446678888
Q ss_pred HHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhcccCCCc-hHHHHhHHHHHHHHHHHhc
Q 002048 187 LDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELP-EFFEDHMREWMTEFKKYLT 260 (975)
Q Consensus 187 l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~~~lp-~~~~~~~~~~~~~~~~~l~ 260 (975)
+....|.++.++.++.+.-.. +. ..++...+++++.+... ..| +.+.. ..+++...++++
T Consensus 76 l~~~~~~i~~~l~~~l~~~~~----~~-------~~~~~~~~L~~l~s~i~-~~~~~~i~~--~~~l~~~~~~l~ 136 (148)
T PF08389_consen 76 LRSNSPDILEILSQILSQSSS----EA-------NEELVKAALKCLKSWIS-WIPIELIIN--SNLLNLIFQLLQ 136 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHCH----CC-------HHHHHHHHHHHHHHHTT-TS-HHHHHS--SSHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhhcc----cc-------HHHHHHHHHHHHHHHHH-hCCHHHhcc--HHHHHHHHHHcC
Confidence 888888888888877653321 11 12344456777766543 122 22221 125555666654
No 26
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.02 E-value=0.15 Score=67.01 Aligned_cols=646 Identities=15% Similarity=0.141 Sum_probs=312.3
Q ss_pred CCCChhhHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHhcC-----------CChHHHHHHHHHhcCcChHHHHHHHHHH
Q 002048 1 MEWNQETLQHLSQCFLHTLSP--SPEPRRAAERSLAEMADR-----------PNYGLAVLRLVAEQTIDEQIRHAAAVNF 67 (975)
Q Consensus 1 m~~~~~~~~~l~~~L~~tls~--d~~~r~~AE~~L~~~~~~-----------p~f~~~Ll~i~~~~~~~~~vRq~Aai~l 67 (975)
|+-++.....+..++...-+. +++.|++|-.+|..+.+. .|+...|..++.+. +..+|..|+-.+
T Consensus 5 ~~~~~~~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg--~~~vk~nAaaaL 82 (2102)
T PLN03200 5 MDDPDGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSG--TLGAKVNAAAVL 82 (2102)
T ss_pred ccCccchHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCC--CHHHHHHHHHHH
Confidence 333444566777777766655 667888888888877652 46777788888764 567887777555
Q ss_pred HhhhhcccCCCCCCCCCCCcCCCCHHHHHHH-HH----HHHHHHhcCCHHHHHHHHHHHHHHhcccC-CCCC------Cc
Q 002048 68 KNHLRFRWAPASDRNSGPTLAPILDAEKDQI-KS----LIVGLMLTSTPRIQSQLSEALVVVGNHDF-PKHW------PT 135 (975)
Q Consensus 68 Kn~I~~~W~~~~~~~~~~~~~~i~~e~K~~I-r~----~ll~~l~~~~~~ir~qla~~i~~Ia~~D~-P~~W------p~ 135 (975)
.|.-+. ++.|..| +. -|+..|-+.+...|...+.++..++...- .+.| ++
T Consensus 83 ~nLS~~------------------e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~G 144 (2102)
T PLN03200 83 GVLCKE------------------EDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEG 144 (2102)
T ss_pred HHHhcC------------------HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcC
Confidence 544221 2222211 22 35566655566789999999999997631 1334 67
Q ss_pred hHHHHHHHhcccccCCChhHHhHHHHHHHHHHHhhhccccchhhhhhHHHHHH-HhhHHHHHHHHHHHHHHhccccCCCC
Q 002048 136 LLPELIANLKDAAQSNNYVSINGILGTANSIFKKFRYQFKTNDLLLDLKYCLD-NFAAPLLEIFLKTAALIDSTVSSGGP 214 (975)
Q Consensus 136 Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i~k~~~~~~~~~~~~~~l~~il~-~~~~~l~~l~~~~~~~~~~~~~~~~~ 214 (975)
.+|.|+..++++. ..|......+..+|..++..- +..... +++ ...|.+..++. .++
T Consensus 145 aVp~Lv~lL~~gs-k~d~~L~~~Av~AL~nLs~~~------en~~~~---IIeaGaVp~LV~LLs------------S~d 202 (2102)
T PLN03200 145 VVPSLWDQLQPGN-KQDKVVEGLLTGALRNLCGST------DGFWSA---TLEAGGVDILVKLLS------------SGN 202 (2102)
T ss_pred ChHHHHHHHhCCc-hhhHHHHHHHHHHHHHHhcCc------cchHHH---HHHcCCHHHHHHHHc------------CCC
Confidence 8899999998761 001111233456777777532 111111 122 24444444332 112
Q ss_pred hHHHHHHHHHHHHHHHHhhhcccCCCchHHHHhHH-HHHHHHHHHhcccCCcccCCCCcCchHHHHHHHHHHHHHHHHHH
Q 002048 215 VATLKLLFESQRLCCRIFYSLNFQELPEFFEDHMR-EWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKM 293 (975)
Q Consensus 215 ~~~~~~~~~~l~~~lk~~~~~~~~~lp~~~~~~~~-~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~~ 293 (975)
......+..++. .++.. -++.....+. .-++.+++++....+ ..+|..+.-.|..+...
T Consensus 203 ~~lQ~eAa~aLa--~Lass------~ee~~~aVIeaGaVP~LV~LL~sg~~------------~~VRE~AA~AL~nLAs~ 262 (2102)
T PLN03200 203 SDAQANAASLLA--RLMMA------FESSISKVLDAGAVKQLLKLLGQGNE------------VSVRAEAAGALEALSSQ 262 (2102)
T ss_pred HHHHHHHHHHHH--HHHcC------ChHHHHHHHHCCCHHHHHHHHccCCC------------hHHHHHHHHHHHHHhcC
Confidence 222222322221 11111 0111111111 123455566543111 13444444444444322
Q ss_pred hHHHHHhhHH--HHHHHHHHHHhccCC----CCcchHHHHHHHHHHHhh-chhhhhhcccCCCchhhHHHHhhcccCCCC
Q 002048 294 NEEEFQGYLN--DFALAVWTLLGNVSQ----SSSRDSLAVTAIKFLTNV-STSVHHTLFAGEGVIPQICQNIVIPNVRLR 366 (975)
Q Consensus 294 ~~~~f~~~~~--~~~~~~~~~l~~~~~----~~~~~~~~~~~l~fl~~~-~~~~~~~~~~~~~~l~~l~~~li~~~l~l~ 366 (975)
..++...+- .-++.+.+.+..... .+....+..+++--+..+ ... .+.+..+.+ ++ .+
T Consensus 263 -s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~--------~~ll~~L~~-ll-----~s 327 (2102)
T PLN03200 263 -SKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM--------SALILYLGE-LS-----ES 327 (2102)
T ss_pred -CHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc--------hhhHHHHHH-hh-----cc
Confidence 112222111 112223333322110 111233455666666665 211 111111111 11 01
Q ss_pred hhhHHHHhh--CHHHHHhhcCCCCcchhhh---HHHHHHHHHHHHHh-hhhhHHHHHHHH---------HHHHHHhccC-
Q 002048 367 DEDEELFEM--NYVEFIRRDMEGSDVDTRR---RIACELLKGIATHY-RQHVMETVSVQI---------QNLLTSFAAN- 430 (975)
Q Consensus 367 ~~d~e~we~--dp~efv~~~~d~~d~~s~R---~~A~~ll~~L~~~~-~~~~~~~l~~~i---------~~~l~~~~~~- 430 (975)
..|.+.-.+ ..-.|.....++.+..... ..++..|-.|+++. +..+...+.+.+ ...+.....-
T Consensus 328 ~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik 407 (2102)
T PLN03200 328 PRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKK 407 (2102)
T ss_pred cchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchh
Confidence 112111011 1223333333333222221 23344566666543 221111122221 1122210000
Q ss_pred ------CCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCC
Q 002048 431 ------PVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIP 504 (975)
Q Consensus 431 ------~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~ 504 (975)
...+-..++.+..++..++....+....+.. .... ..++..|.+ +.+-+|..|+|.++.....-+
T Consensus 408 ~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~-~ggI----p~LV~LL~s----~s~~iQ~~A~~~L~nLa~~nd 478 (2102)
T PLN03200 408 VLVGLITMATADVQEELIRALSSLCCGKGGLWEALGG-REGV----QLLISLLGL----SSEQQQEYAVALLAILTDEVD 478 (2102)
T ss_pred hhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHH-cCcH----HHHHHHHcC----CCHHHHHHHHHHHHHHHcCCH
Confidence 0123356666667777766431000000000 0011 223334454 467889999999998764322
Q ss_pred HhH----HHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHH--HHHHHHHHhcCCCCchhhH
Q 002048 505 KIH----AFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLS--VLMTSLFNAFKFPESEENQ 578 (975)
Q Consensus 505 ~~~----~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~--~il~~L~~ll~~~~~~~~~ 578 (975)
... -...+|.++++|.+++..+|..|++||.++.... +..+..+. ..+..|+.+++..+....+
T Consensus 479 enr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~----------~qir~iV~~aGAIppLV~LL~sgd~~~q~ 548 (2102)
T PLN03200 479 ESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHS----------EDIRACVESAGAVPALLWLLKNGGPKGQE 548 (2102)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCc----------HHHHHHHHHCCCHHHHHHHHhCCCHHHHH
Confidence 111 2468999999999999999999999999987642 12222221 3455566666665433444
Q ss_pred HHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCcchHHH--HHHhhHHHH
Q 002048 579 YIMKCIMRVLG-VAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISA--FEASILPSL 655 (975)
Q Consensus 579 ~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~~~~~~--l~~~l~P~i 655 (975)
....++..++. -..+ .+..++.++ ..+++.....+++.++.++... + ..+.... .....+|.+
T Consensus 549 ~Aa~AL~nLi~~~d~~-------~I~~Lv~LL-----lsdd~~~~~~aL~vLgnIlsl~-~-~~d~~~~g~~~~ggL~~L 614 (2102)
T PLN03200 549 IAAKTLTKLVRTADAA-------TISQLTALL-----LGDLPESKVHVLDVLGHVLSVA-S-LEDLVREGSAANDALRTL 614 (2102)
T ss_pred HHHHHHHHHHhccchh-------HHHHHHHHh-----cCCChhHHHHHHHHHHHHHhhc-c-hhHHHHHhhhccccHHHH
Confidence 55666666655 2222 123344333 2234455567788887777653 2 1111111 123578999
Q ss_pred HHHHhcccccchHHHHHHHHHHHHhcCCCCchhHH--HHHHhhcCccccc-cCCCccchHHHHHHHHccCcc----chhc
Q 002048 656 QIILQNDVTEFLPYAFQLLAQLIELNRPPLSSNYM--QIFNLLLSPDSWK-RSSNVPALVRLLQAFLQKVPR----EIAQ 728 (975)
Q Consensus 656 ~~il~~~~~~~~~~~l~ll~~ll~~~~~~~~~~~~--~lf~~l~~~~l~~-~~~~l~~~~~~L~~~i~~~~~----~~~~ 728 (975)
..+++.+..+-..++..++..+...++. ....+. ..+|+++.. +.. +.+.-......|.+...-+.+ .+.+
T Consensus 615 v~LL~sgs~~ikk~Aa~iLsnL~a~~~d-~~~avv~agaIpPLV~L-Lss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~ 692 (2102)
T PLN03200 615 IQLLSSSKEETQEKAASVLADIFSSRQD-LCESLATDEIINPCIKL-LTNNTEAVATQSARALAALSRSIKENRKVSYAA 692 (2102)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcCChH-HHHHHHHcCCHHHHHHH-HhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999888878888999999888776654 322222 455666652 222 223445566666666653332 1233
Q ss_pred cCchHHHHHHHHHhhcCCCCc--chHHHHHHHHHHh
Q 002048 729 EGKLREVLGIFNMLVLSPSTD--EQGFYVLNTIVES 762 (975)
Q Consensus 729 ~~~~~~il~i~~~ll~~~~~~--~~a~~ll~~ii~~ 762 (975)
.+.+.+++++ +.+.+.+ ..|...+..++..
T Consensus 693 ~GaV~pL~~L----L~~~d~~v~e~Al~ALanLl~~ 724 (2102)
T PLN03200 693 EDAIKPLIKL----AKSSSIEVAEQAVCALANLLSD 724 (2102)
T ss_pred cCCHHHHHHH----HhCCChHHHHHHHHHHHHHHcC
Confidence 3345554443 3333333 3456666666655
No 27
>PTZ00429 beta-adaptin; Provisional
Probab=98.01 E-value=0.08 Score=63.75 Aligned_cols=429 Identities=10% Similarity=0.100 Sum_probs=208.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHhcC----CChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccC--------
Q 002048 9 QHLSQCFLHTLSPSPEPRRAAERSLAEMADR----PNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWA-------- 76 (975)
Q Consensus 9 ~~l~~~L~~tls~d~~~r~~AE~~L~~~~~~----p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~-------- 76 (975)
++|.+.| -|.|...|+.|=.++-..... ..++...++.+.+ .+..+|.+.-+|+.|+-+.+=.
T Consensus 35 ~ELr~~L---~s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S--~d~elKKLvYLYL~~ya~~~pelalLaINt 109 (746)
T PTZ00429 35 AELQNDL---NGTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPS--TDLELKKLVYLYVLSTARLQPEKALLAVNT 109 (746)
T ss_pred HHHHHHH---HCCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcccChHHHHHHHHH
Confidence 4555555 356766777776665544431 1222223333333 4788999999999888553211
Q ss_pred --CCCCCC----CCC----CcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCCCCCC--chHHHHHHHh
Q 002048 77 --PASDRN----SGP----TLAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWP--TLLPELIANL 144 (975)
Q Consensus 77 --~~~~~~----~~~----~~~~i~~e~K~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P~~Wp--~Ll~~l~~~l 144 (975)
.+-.+. ++- -..--.++--+.+-..+..++.+.++-||+..+.|+.+|.+.+ |+--+ ++++.|.+++
T Consensus 110 l~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~-pelv~~~~~~~~L~~LL 188 (746)
T PTZ00429 110 FLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD-MQLFYQQDFKKDLVELL 188 (746)
T ss_pred HHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-cccccccchHHHHHHHh
Confidence 000000 000 0000112222333344445555566789999999999998764 43322 4677888888
Q ss_pred cccccCCChhHHhHHHHHHHHHHHhhhcccc-chhhhhhHHHHHHHhh-------------------HHHHHHHHHHHHH
Q 002048 145 KDAAQSNNYVSINGILGTANSIFKKFRYQFK-TNDLLLDLKYCLDNFA-------------------APLLEIFLKTAAL 204 (975)
Q Consensus 145 ~~~~~~~d~~~~~~~L~~l~~i~k~~~~~~~-~~~~~~~l~~il~~~~-------------------~~l~~l~~~~~~~ 204 (975)
..+ |+..+.+|+.+|.+|.+.-...+. .......+-..+..+. .....++..+...
T Consensus 189 ~D~----dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~ 264 (746)
T PTZ00429 189 NDN----NPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPR 264 (746)
T ss_pred cCC----CccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Confidence 877 999999999999999754210000 0000000100111000 0011111111111
Q ss_pred HhccccCCCChHHHHHHHHHHHHHHHHhhhcccCCCchHHHHhHHHHHHHHHHHhcccCCcccCCCCcCchHHHHHHHHH
Q 002048 205 IDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFEDHMREWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVC 284 (975)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~~~lp~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~k~~~~ 284 (975)
+.. .+. ...+++.+++++ +....-|+.....+......++.+... + ..++--++
T Consensus 265 Lq~-----~N~---AVVl~Aik~il~----l~~~~~~~~~~~~~~rl~~pLv~L~ss-------~-------~eiqyvaL 318 (746)
T PTZ00429 265 MSH-----QNP---AVVMGAIKVVAN----LASRCSQELIERCTVRVNTALLTLSRR-------D-------AETQYIVC 318 (746)
T ss_pred hcC-----CCH---HHHHHHHHHHHH----hcCcCCHHHHHHHHHHHHHHHHHhhCC-------C-------ccHHHHHH
Confidence 111 111 123333333332 211101222222222222223333211 1 13455677
Q ss_pred HHHHHHHHHhHHHHHhhHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHhhchhhhhhcccCCCchhhHHHHhhcccCC
Q 002048 285 ENISLYMKMNEEEFQGYLNDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNVSTSVHHTLFAGEGVIPQICQNIVIPNVR 364 (975)
Q Consensus 285 ~~l~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~~~~l~~l~~~li~~~l~ 364 (975)
+.+..+..+++..|.+++..|+-. .. ....+....++.+..+ .++.++..++..+.
T Consensus 319 r~I~~i~~~~P~lf~~~~~~Ff~~--------~~--Dp~yIK~~KLeIL~~L---------ane~Nv~~IL~EL~----- 374 (746)
T PTZ00429 319 KNIHALLVIFPNLLRTNLDSFYVR--------YS--DPPFVKLEKLRLLLKL---------VTPSVAPEILKELA----- 374 (746)
T ss_pred HHHHHHHHHCHHHHHHHHHhhhcc--------cC--CcHHHHHHHHHHHHHH---------cCcccHHHHHHHHH-----
Confidence 788888888888777665433111 11 1223556666666655 11345555553332
Q ss_pred CChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHH
Q 002048 365 LRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYL 444 (975)
Q Consensus 365 l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ 444 (975)
+|+.+ . ....|..|..-+..++.+++. ....+++.+.+.+.. ..+. ..+ ++..
T Consensus 375 --------------eYa~d----~-D~ef~r~aIrAIg~lA~k~~~-~a~~cV~~Ll~ll~~-----~~~~-v~e-~i~v 427 (746)
T PTZ00429 375 --------------EYASG----V-DMVFVVEVVRAIASLAIKVDS-VAPDCANLLLQIVDR-----RPEL-LPQ-VVTA 427 (746)
T ss_pred --------------HHhhc----C-CHHHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHhcC-----Cchh-HHH-HHHH
Confidence 23321 1 123455667777778877765 334455555555532 1122 223 3333
Q ss_pred HHHHHhhhcCCCccccCcccHHHHHHHhc-ccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCC
Q 002048 445 VVSLATKKAGSTSISTDLVDVQSFFTSVI-VPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAES 523 (975)
Q Consensus 445 ig~ia~~~~~g~~~~~~~~~~~~~l~~~v-~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~ 523 (975)
+..+-.+. . ... +...+...+ ...+ ..|-.|+..+|++|+|++.++ ....++..+++.+.+.+
T Consensus 428 ik~Ilrky----P---~~~-il~~L~~~~~~~~i------~e~~AKaaiiWILGEy~~~I~--~a~~~L~~~i~~f~~E~ 491 (746)
T PTZ00429 428 AKDIVRKY----P---ELL-MLDTLVTDYGADEV------VEEEAKVSLLWMLGEYCDFIE--NGKDIIQRFIDTIMEHE 491 (746)
T ss_pred HHHHHHHC----c---cHH-HHHHHHHhhccccc------ccHHHHHHHHHHHHhhHhhHh--hHHHHHHHHHhhhccCC
Confidence 33332111 0 000 111111111 1222 367889999999999998663 24556655666666778
Q ss_pred chHHHHHHHHHHHHHcc
Q 002048 524 NVVHSYAASCIEKLLQV 540 (975)
Q Consensus 524 ~~V~~~Aa~aL~~~~~~ 540 (975)
..||.....|.-++...
T Consensus 492 ~~VqlqlLta~vKlfl~ 508 (746)
T PTZ00429 492 QRVQLAILSAAVKMFLR 508 (746)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 88998887777776543
No 28
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.0062 Score=67.21 Aligned_cols=126 Identities=14% Similarity=0.222 Sum_probs=89.5
Q ss_pred chhhhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHH
Q 002048 390 VDTRRRIACELLKGIATHY-RQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSF 468 (975)
Q Consensus 390 ~~s~R~~A~~ll~~L~~~~-~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~ 468 (975)
.|..|.+|.--+..+++.+ ...-...+-.+|.+...+|...|+.+-++ |++..+.+++..+ |..
T Consensus 13 lYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rk--GgLiGlAA~~iaL--g~~----------- 77 (675)
T KOG0212|consen 13 LYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRK--GGLIGLAAVAIAL--GIK----------- 77 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCccccccc--chHHHHHHHHHHh--ccc-----------
Confidence 5778888887777777653 22233455566666777776666554443 7776666554433 110
Q ss_pred HHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccc
Q 002048 469 FTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSR 548 (975)
Q Consensus 469 l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~ 548 (975)
+ . .+...+++.++.|++|++.-||.+||.++..+....
T Consensus 78 ------------~---~--------------------~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~------- 115 (675)
T KOG0212|consen 78 ------------D---A--------------------GYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVA------- 115 (675)
T ss_pred ------------c---H--------------------HHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHh-------
Confidence 0 0 246677888999999999999999999999988763
Q ss_pred cccccccchHHHHHHHHHHhcCCCCc
Q 002048 549 YNSADITPYLSVLMTSLFNAFKFPES 574 (975)
Q Consensus 549 ~~~~~l~p~l~~il~~L~~ll~~~~~ 574 (975)
+..+.+|.+.|...|+++..+++.
T Consensus 116 --k~~v~~~Fn~iFdvL~klsaDsd~ 139 (675)
T KOG0212|consen 116 --KGEVLVYFNEIFDVLCKLSADSDQ 139 (675)
T ss_pred --ccCcccchHHHHHHHHHHhcCCcc
Confidence 678999999999999999977653
No 29
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.87 E-value=0.25 Score=64.97 Aligned_cols=648 Identities=11% Similarity=0.033 Sum_probs=305.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHhc-------------CCChHHHHHHHHHhcC-cChHHHHHHHHHHHhhhhcc
Q 002048 9 QHLSQCFLHTLSPSPEPRRAAERSLAEMAD-------------RPNYGLAVLRLVAEQT-IDEQIRHAAAVNFKNHLRFR 74 (975)
Q Consensus 9 ~~l~~~L~~tls~d~~~r~~AE~~L~~~~~-------------~p~f~~~Ll~i~~~~~-~~~~vRq~Aai~lKn~I~~~ 74 (975)
.-|..+|. +.+.+.|+.|=..|..+.. .+|....|++++.+.+ .+..++..|...|.|....+
T Consensus 102 ppLV~LL~---sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~ 178 (2102)
T PLN03200 102 PPLLSLLK---SGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGST 178 (2102)
T ss_pred HHHHHHHH---CCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCc
Confidence 34666664 3467789999777777654 2677889999988754 24557888888999887642
Q ss_pred cCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccC-CCC---CCchHHHHHHHhcccccC
Q 002048 75 WAPASDRNSGPTLAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDF-PKH---WPTLLPELIANLKDAAQS 150 (975)
Q Consensus 75 W~~~~~~~~~~~~~~i~~e~K~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~-P~~---Wp~Ll~~l~~~l~~~~~~ 150 (975)
.... ..-.+...=..++..+.+.++.++...+.++..++..+- |.+ =-+.+|.++++++++.
T Consensus 179 -en~~-----------~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~-- 244 (2102)
T PLN03200 179 -DGFW-----------SATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGN-- 244 (2102)
T ss_pred -cchH-----------HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCC--
Confidence 1000 000011122255666666667788888888877776521 211 1357899999997752
Q ss_pred CChhHHhHHHHHHHHHHHhhhccccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHH
Q 002048 151 NNYVSINGILGTANSIFKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCR 230 (975)
Q Consensus 151 ~d~~~~~~~L~~l~~i~k~~~~~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk 230 (975)
++.....|..+|..++.. +.+.+..+.. ..-.|.|..++........+. ..+...... +..
T Consensus 245 -~~~VRE~AA~AL~nLAs~------s~e~r~~Iv~--aGgIp~LI~lL~sp~~e~~~~---~~~~~Lqe~-------Avw 305 (2102)
T PLN03200 245 -EVSVRAEAAGALEALSSQ------SKEAKQAIAD--AGGIPALINATVAPSKEFMQG---EFAQALQEN-------AMG 305 (2102)
T ss_pred -ChHHHHHHHHHHHHHhcC------CHHHHHHHHH--CCCHHHHHHHHhCcchhhhcc---ccchHHHHH-------HHH
Confidence 556677788888888853 2333322211 233455555443211111000 011111111 111
Q ss_pred HhhhcccCCCchHHHHhHHHHHHHHHHHhcccCCcccCCCCcCchHHHHHHHHHHHHHHHHHHhHHHHHhhH--HHHHHH
Q 002048 231 IFYSLNFQELPEFFEDHMREWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQGYL--NDFALA 308 (975)
Q Consensus 231 ~~~~~~~~~lp~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~f~~~~--~~~~~~ 308 (975)
.+.++. -+. ...++.+...+... .|.. ......|++.-+..+.+.-. ....-+ ......
T Consensus 306 ALsNIc-gg~--------~~ll~~L~~ll~s~------rd~~---~~ada~gALayll~l~d~~~-~~~~~i~~~~v~~~ 366 (2102)
T PLN03200 306 ALANIC-GGM--------SALILYLGELSESP------RSPA---PIADTLGALAYALMVFDSSA-ESTRAFDPTVIEQI 366 (2102)
T ss_pred HHHHHh-CCc--------hhhHHHHHHhhccc------chHH---HHHHHHhhHHHHHHhcCCch-hhhhhccccccHHH
Confidence 222211 111 11122222222110 0000 00011122222222111100 000000 001111
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHHHhh-chhhhhhcccCCCchhhHHHHhhcccCCCChhhHHHHhhCHHHHHhhcCCC
Q 002048 309 VWTLLGNVSQSSSRDSLAVTAIKFLTNV-STSVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEG 387 (975)
Q Consensus 309 ~~~~l~~~~~~~~~~~~~~~~l~fl~~~-~~~~~~~~~~~~~~l~~l~~~li~~~l~l~~~d~e~we~dp~efv~~~~d~ 387 (975)
..+++.. .........+.+-+.++ .++..++.+...+-...++. .+....
T Consensus 367 LV~Llr~----k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~-----LL~~~~-------------------- 417 (2102)
T PLN03200 367 LVKLLKP----RDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVG-----LITMAT-------------------- 417 (2102)
T ss_pred HHHHhCC----CCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhh-----hhccCC--------------------
Confidence 2222211 11111123334444443 33333333322222222222 222111
Q ss_pred CcchhhhHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcc
Q 002048 388 SDVDTRRRIACELLKGIATHYRQHVM----ETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLV 463 (975)
Q Consensus 388 ~d~~s~R~~A~~ll~~L~~~~~~~~~----~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~ 463 (975)
...+..+...|..|+..-.+..- .-..+.+.+.|. +.+-..++.|+++++.++..-.+....+-+ -
T Consensus 418 ---~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~------s~s~~iQ~~A~~~L~nLa~~ndenr~aIie-a 487 (2102)
T PLN03200 418 ---ADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLG------LSSEQQQEYAVALLAILTDEVDESKWAITA-A 487 (2102)
T ss_pred ---HHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHc------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-C
Confidence 12344445555555533111100 011233334443 233466777888998886422100000000 0
Q ss_pred cHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCC--HhHH--HhHHHHHHHhhcCCCchHHHHHHHHHHHHHc
Q 002048 464 DVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIP--KIHA--FQFFPDLVRFLGAESNVVHSYAASCIEKLLQ 539 (975)
Q Consensus 464 ~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~--~~~~--~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~ 539 (975)
+..+. +...|.+ +.+-+|..|+|.++..+..-+ .... ..+++.+++.|++.+..++..|+.||.+++.
T Consensus 488 GaIP~----LV~LL~s----~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~ 559 (2102)
T PLN03200 488 GGIPP----LVQLLET----GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVR 559 (2102)
T ss_pred CCHHH----HHHHHcC----CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 11122 2333444 467899999999999875311 1112 2578899999999999999999999999876
Q ss_pred cccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh-hcc-chhhh---HHHHHHHHHHHHHHHHh
Q 002048 540 VKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG-VAE-ISNEV---AAPCISGLTSILNEVCK 614 (975)
Q Consensus 540 ~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~-~~~-~i~p~---~~~l~~~L~~~l~~~~~ 614 (975)
..+ .+.+ ..|..++...+......+++++..++. ... ++..- ....++.|..++ +
T Consensus 560 ~~d--------~~~I--------~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL----~ 619 (2102)
T PLN03200 560 TAD--------AATI--------SQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLL----S 619 (2102)
T ss_pred ccc--------hhHH--------HHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHH----c
Confidence 532 2222 333444444333344456677766666 222 11100 012334444433 3
Q ss_pred CCCCCchhHHHHHHHHHHHHHhhhcCcchH-HHHHHhhHHHHHHHHhcccccchHHHHHHHHHHHHhcCCCCchhHH--H
Q 002048 615 NPKSPIFNHYLFESVAVLVRRACQRDPSLI-SAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRPPLSSNYM--Q 691 (975)
Q Consensus 615 ~~~~~~~~~~~~e~l~~li~~~~~~~~~~~-~~l~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~~~~~~~~~~~--~ 691 (975)
+++ +........+|..+. ..+++.. .-+..-.+|++-..|.....+.-.++-.-++.+.......--..+. .
T Consensus 620 sgs-~~ikk~Aa~iLsnL~----a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~G 694 (2102)
T PLN03200 620 SSK-EETQEKAASVLADIF----SSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAED 694 (2102)
T ss_pred CCC-HHHHHHHHHHHHHHh----cCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcC
Confidence 332 222223334444443 3344432 2344556777778887766666666666666666532210001111 2
Q ss_pred HHHhhcCccccccCCCccchHHHHHHHHccCc--cchhccCchHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcchhh-H
Q 002048 692 IFNLLLSPDSWKRSSNVPALVRLLQAFLQKVP--REIAQEGKLREVLGIFNMLVLSPSTDEQGFYVLNTIVESLEYGV-I 768 (975)
Q Consensus 692 lf~~l~~~~l~~~~~~l~~~~~~L~~~i~~~~--~~~~~~~~~~~il~i~~~ll~~~~~~~~a~~ll~~ii~~~~~~~-~ 768 (975)
..|++++..--.+.+....++..|.++...+. ..+.+.+.+..+..+++.- +.....+|...+..+....+.+. +
T Consensus 695 aV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G--~~~~k~~Aa~AL~~L~~~~~~~~~~ 772 (2102)
T PLN03200 695 AIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREG--TLEGKRNAARALAQLLKHFPVDDVL 772 (2102)
T ss_pred CHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhC--ChHHHHHHHHHHHHHHhCCChhHHH
Confidence 45555553211234567788888999888764 3455545565555555421 11123566766666766655332 2
Q ss_pred hhhH--HHHHHHHHHHhhc
Q 002048 769 AQFV--PHIWGVLFTRLQN 785 (975)
Q Consensus 769 ~~~l--~~il~~~l~~L~~ 785 (975)
..++ -..+..++..|..
T Consensus 773 ~~~~~~~g~v~~l~~~L~~ 791 (2102)
T PLN03200 773 KDSVQCRGTVLALVDLLNS 791 (2102)
T ss_pred HHHHHHhCcHHHHHHHHhc
Confidence 2222 2334444555543
No 30
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.84 E-value=0.027 Score=66.89 Aligned_cols=202 Identities=14% Similarity=0.122 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHhh-chhhhhhcccCCCchhhHH
Q 002048 277 DGLRAAVCENISLYMKMNEEEFQGYLNDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNV-STSVHHTLFAGEGVIPQIC 355 (975)
Q Consensus 277 ~~~k~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~fl~~~-~~~~~~~~~~~~~~l~~l~ 355 (975)
..+|-.+++.+..+..+++..+. +. ......+.. . ....+...+++.+..+ ... ++..++
T Consensus 281 ~nvr~~~L~~L~~l~~~~~~~v~-~~----~~~~~~l~~-~---~d~~Ir~~~l~lL~~l~~~~----------n~~~Il 341 (526)
T PF01602_consen 281 PNVRYIALDSLSQLAQSNPPAVF-NQ----SLILFFLLY-D---DDPSIRKKALDLLYKLANES----------NVKEIL 341 (526)
T ss_dssp HHHHHHHHHHHHHHCCHCHHHHG-TH----HHHHHHHHC-S---SSHHHHHHHHHHHHHH--HH----------HHHHHH
T ss_pred chhehhHHHHHHHhhcccchhhh-hh----hhhhheecC-C---CChhHHHHHHHHHhhccccc----------chhhHH
Confidence 35666788888888877744332 11 111112221 1 2345777788888877 322 233334
Q ss_pred HHhhcccCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCc
Q 002048 356 QNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANW 435 (975)
Q Consensus 356 ~~li~~~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w 435 (975)
..+. +++ ++ ....+.|..+..-+..++..++... ...++.+.+++.. .+.
T Consensus 342 ~eL~-~~l------------------~~----~~d~~~~~~~i~~I~~la~~~~~~~-~~~v~~l~~ll~~------~~~ 391 (526)
T PF01602_consen 342 DELL-KYL------------------SE----LSDPDFRRELIKAIGDLAEKFPPDA-EWYVDTLLKLLEI------SGD 391 (526)
T ss_dssp HHHH-HHH------------------HH----C--HHHHHHHHHHHHHHHHHHGSSH-HHHHHHHHHHHHC------TGG
T ss_pred HHHH-HHH------------------Hh----ccchhhhhhHHHHHHHHHhccCchH-HHHHHHHHHhhhh------ccc
Confidence 3332 222 00 0012256777778888888886533 4555666666652 222
Q ss_pred hhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCH-hHHHhHHHH
Q 002048 436 KDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPK-IHAFQFFPD 514 (975)
Q Consensus 436 ~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~-~~~~~~~~~ 514 (975)
...+.++..+..+.... .+ ........+...+.+. .++-+++.++|++|.|.+..+. +....++..
T Consensus 392 ~~~~~~~~~i~~ll~~~-~~---------~~~~~l~~L~~~l~~~---~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~ 458 (526)
T PF01602_consen 392 YVSNEIINVIRDLLSNN-PE---------LREKILKKLIELLEDI---SSPEALAAAIWILGEYGELIENTESAPDILRS 458 (526)
T ss_dssp GCHCHHHHHHHHHHHHS-TT---------THHHHHHHHHHHHTSS---SSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHH
T ss_pred cccchHHHHHHHHhhcC-hh---------hhHHHHHHHHHHHHHh---hHHHHHHHHHhhhcccCCcccccccHHHHHHH
Confidence 33343444444333221 11 1112222223333331 4566899999999999986542 367778888
Q ss_pred HHHhhcCCCchHHHHHHHHHHHHHcc
Q 002048 515 LVRFLGAESNVVHSYAASCIEKLLQV 540 (975)
Q Consensus 515 l~~~L~~~~~~V~~~Aa~aL~~~~~~ 540 (975)
+.+.....+..||..+..|+.++...
T Consensus 459 l~~~~~~~~~~vk~~ilt~~~Kl~~~ 484 (526)
T PF01602_consen 459 LIENFIEESPEVKLQILTALAKLFKR 484 (526)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccccHHHHHHHHHHHHHHHhh
Confidence 88888877888999999888887654
No 31
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.77 E-value=0.18 Score=59.90 Aligned_cols=165 Identities=12% Similarity=0.124 Sum_probs=96.1
Q ss_pred chhhhHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHH
Q 002048 390 VDTRRRIACELLKGIATHYR-QHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSF 468 (975)
Q Consensus 390 ~~s~R~~A~~ll~~L~~~~~-~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~ 468 (975)
..+.|..|.+++..++.... +.+++.++.+ +.+ ..+-..+..++..++.++.+... ...|
T Consensus 317 d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~----l~~-----~~d~~~~~~~i~~I~~la~~~~~----------~~~~ 377 (526)
T PF01602_consen 317 DPSIRKKALDLLYKLANESNVKEILDELLKY----LSE-----LSDPDFRRELIKAIGDLAEKFPP----------DAEW 377 (526)
T ss_dssp SHHHHHHHHHHHHHH--HHHHHHHHHHHHHH----HHH-----C--HHHHHHHHHHHHHHHHHHGS----------SHHH
T ss_pred ChhHHHHHHHHHhhcccccchhhHHHHHHHH----HHh-----ccchhhhhhHHHHHHHHHhccCc----------hHHH
Confidence 45688899999999996432 2333333333 321 22345788888999999876522 2355
Q ss_pred HHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcC-CCchHHHHHHHHHHHHHccccCCCcc
Q 002048 469 FTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGA-ESNVVHSYAASCIEKLLQVKDEGGKS 547 (975)
Q Consensus 469 l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~-~~~~V~~~Aa~aL~~~~~~~~~~~~~ 547 (975)
+.+.++..+.. ....+...+...+...... .++....++..+...+.+ ++..++..+++.+..+.+..+
T Consensus 378 ~v~~l~~ll~~----~~~~~~~~~~~~i~~ll~~-~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~----- 447 (526)
T PF01602_consen 378 YVDTLLKLLEI----SGDYVSNEIINVIRDLLSN-NPELREKILKKLIELLEDISSPEALAAAIWILGEYGELIE----- 447 (526)
T ss_dssp HHHHHHHHHHC----TGGGCHCHHHHHHHHHHHH-STTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHT-----
T ss_pred HHHHHHHhhhh----ccccccchHHHHHHHHhhc-ChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCccc-----
Confidence 56666666665 2455555555555554332 234566678888888887 467788889999998776532
Q ss_pred ccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh
Q 002048 548 RYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG 589 (975)
Q Consensus 548 ~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~ 589 (975)
... ..+.++..+.......+....-.++.+++.+..
T Consensus 448 -----~~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~ 483 (526)
T PF01602_consen 448 -----NTE-SAPDILRSLIENFIEESPEVKLQILTALAKLFK 483 (526)
T ss_dssp -----TTT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred -----ccc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHh
Confidence 122 455666666655544222122255566666655
No 32
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.21 Score=59.45 Aligned_cols=371 Identities=13% Similarity=0.144 Sum_probs=185.5
Q ss_pred CChHHHHHHHHHHHHHhc--CCChHHHHHHHHHhc--CcChHHHHHHHHHHHhhhhc-ccCCCCCCCCCCCcCCCCH---
Q 002048 21 PSPEPRRAAERSLAEMAD--RPNYGLAVLRLVAEQ--TIDEQIRHAAAVNFKNHLRF-RWAPASDRNSGPTLAPILD--- 92 (975)
Q Consensus 21 ~d~~~r~~AE~~L~~~~~--~p~f~~~Ll~i~~~~--~~~~~vRq~Aai~lKn~I~~-~W~~~~~~~~~~~~~~i~~--- 92 (975)
.+.-+|.+=.+-|+.+-+ .|+.|..+++.+.+- +.+...=.-|.++|...+++ .|+..+++. ++.+
T Consensus 101 ~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~------~l~~~v~ 174 (1010)
T KOG1991|consen 101 VPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQ------PLGEAVE 174 (1010)
T ss_pred CchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccc------cHHHHHH
Confidence 456789999999987765 588788887766542 23555666788999999987 587655432 2332
Q ss_pred HHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccCCC---------CCCchHHHHHHHhcc-cccCCChh-----
Q 002048 93 AEKDQIKSLIVGLMLTST---PRIQSQLSEALVVVGNHDFPK---------HWPTLLPELIANLKD-AAQSNNYV----- 154 (975)
Q Consensus 93 e~K~~Ir~~ll~~l~~~~---~~ir~qla~~i~~Ia~~D~P~---------~Wp~Ll~~l~~~l~~-~~~~~d~~----- 154 (975)
+-=..|.+...+.+..++ ..+.+++.-+......++.|. .|=+|+-.+++.=-. +....|+.
T Consensus 175 ~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~ 254 (1010)
T KOG1991|consen 175 ELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSW 254 (1010)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccc
Confidence 223344444444444443 247777777777788888884 355554444443111 00011221
Q ss_pred ----HHhHHHHHHHHHHHhhhccc-cc--hhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHH
Q 002048 155 ----SINGILGTANSIFKKFRYQF-KT--NDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRL 227 (975)
Q Consensus 155 ----~~~~~L~~l~~i~k~~~~~~-~~--~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 227 (975)
...=|+..|+.+|.+|.... .. .+.|.+ .....+++.+++.+-+....+.++.+ -... +++.
T Consensus 255 ~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~--~f~~n~~~~ile~~lk~l~~~~~~~y--ls~r-------vl~~ 323 (1010)
T KOG1991|consen 255 PWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQ--MFLKNFAQGILEVFLKILEQWRQQLY--LSDR-------VLYY 323 (1010)
T ss_pred cchhhHHHHHHHHHHHHHHhCCccccchhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccc--CCHH-------HHHH
Confidence 23448999999999996532 11 122222 23445555555555444444433210 0111 2233
Q ss_pred HHHHhhhcccCCCc-hHHHHhHHHHHHHHH-HHhcccCCcccCCCC---cCchHHHHHH-------------HHHHHHHH
Q 002048 228 CCRIFYSLNFQELP-EFFEDHMREWMTEFK-KYLTTNYPALESTSD---GLGLVDGLRA-------------AVCENISL 289 (975)
Q Consensus 228 ~lk~~~~~~~~~lp-~~~~~~~~~~~~~~~-~~l~~~~~~l~~~~~---~~~~~~~~k~-------------~~~~~l~~ 289 (975)
++.-+..++.+..- ..+..|+..+.+-+. .++. ..+.|+ +..|.+-+|+ .+..++..
T Consensus 324 ~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc-----~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~ 398 (1010)
T KOG1991|consen 324 LLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMC-----FNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTT 398 (1010)
T ss_pred HHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcC-----CCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHH
Confidence 33333222211000 222344444332211 1111 112222 3445555553 24444555
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHhccCCCC---cchHHHHHHHHHHHhh-----chhhhhhcccCCCchhhHHHHhhcc
Q 002048 290 YMKMNEEEFQGYLNDFALAVWTLLGNVSQSS---SRDSLAVTAIKFLTNV-----STSVHHTLFAGEGVIPQICQNIVIP 361 (975)
Q Consensus 290 ~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~l~fl~~~-----~~~~~~~~~~~~~~l~~l~~~li~~ 361 (975)
...|-++ .-++.++..+.+++.+....+ +..+-..-|+..+.++ +++.| ++.+..++...|+|
T Consensus 399 ~~~KR~k---e~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~------~~~mE~flv~hVfP 469 (1010)
T KOG1991|consen 399 LVSKRGK---ETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPY------KSQMEYFLVNHVFP 469 (1010)
T ss_pred HHHhcch---hhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCch------HHHHHHHHHHHhhH
Confidence 5554432 234566677777776533221 1222233344444444 22223 34455555556667
Q ss_pred cCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHH-HHhhh-hhHHHHHHHHHHHHHHhccCCCCCchhHH
Q 002048 362 NVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIA-THYRQ-HVMETVSVQIQNLLTSFAANPVANWKDKD 439 (975)
Q Consensus 362 ~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~-~~~~~-~~~~~l~~~i~~~l~~~~~~~~~~w~~ke 439 (975)
.++ +| .--.|.=|+.++..++ ..|++ ..+...++.+.+.+.+ .++=.-+.|
T Consensus 470 ~f~-----------s~------------~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~----d~~lPV~Ve 522 (1010)
T KOG1991|consen 470 EFQ-----------SP------------YGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLN----DNELPVRVE 522 (1010)
T ss_pred hhc-----------Cc------------hhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcc----CCcCchhhH
Confidence 665 22 2224556677888888 44654 3334444545444431 122356788
Q ss_pred HHHHHHHHHH
Q 002048 440 CAIYLVVSLA 449 (975)
Q Consensus 440 aal~~ig~ia 449 (975)
||+.+=.-++
T Consensus 523 AalALq~fI~ 532 (1010)
T KOG1991|consen 523 AALALQSFIS 532 (1010)
T ss_pred HHHHHHHHHh
Confidence 8865544443
No 33
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.26 Score=57.45 Aligned_cols=240 Identities=16% Similarity=0.249 Sum_probs=148.5
Q ss_pred CcchhHhhHHHHHHHh---hc-----cCCHhHH----HhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCcccccc
Q 002048 484 AFPMLKAGALKFFTMF---RI-----QIPKIHA----FQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNS 551 (975)
Q Consensus 484 ~~~~Lr~ra~~~l~~f---~~-----~~~~~~~----~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~ 551 (975)
+.++|..-|+.++.+. ++ .+.++.+ ..++..++..++-++-.=--+-..|+-+++... .
T Consensus 510 ~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~---------~ 580 (960)
T KOG1992|consen 510 ESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISIL---------Q 580 (960)
T ss_pred cchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhC---------H
Confidence 4778888888888764 21 2334333 344455555555543333456677777877653 5
Q ss_pred ccccchHHHHHHHHHHhcCCCCch-----hhHHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHH
Q 002048 552 ADITPYLSVLMTSLFNAFKFPESE-----ENQYIMKCIMRVLG-VAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYL 625 (975)
Q Consensus 552 ~~l~p~l~~il~~L~~ll~~~~~~-----~~~~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~ 625 (975)
+.+.|+.+.++..|-+++.++.+. -+.|+.++++-++. .++.-..-...+...|.+.++.+..+. --.|.-+.
T Consensus 581 ~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eD-I~EfiPYv 659 (960)
T KOG1992|consen 581 SAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSED-IQEFIPYV 659 (960)
T ss_pred HhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 678899999999988888544332 47799999998888 433321122445566666665554321 12356689
Q ss_pred HHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhcc---cccchHHHHHHHHHHHHhcCCCCc-----hhHHHHHHhhc
Q 002048 626 FESVAVLVRRACQRDPSLISAFEASILPSLQIILQND---VTEFLPYAFQLLAQLIELNRPPLS-----SNYMQIFNLLL 697 (975)
Q Consensus 626 ~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~---~~~~~~~~l~ll~~ll~~~~~~~~-----~~~~~lf~~l~ 697 (975)
|..++.++..- ++ .+-+...|++..+|++. -.+-+|....++.++++..+..+. +....+|..++
T Consensus 660 fQlla~lve~~-~~------~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLi 732 (960)
T KOG1992|consen 660 FQLLAVLVEHS-SG------TIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLI 732 (960)
T ss_pred HHHHHHHHHhc-CC------CCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHh
Confidence 99999999874 21 22334555666666553 235678899999999998664222 33445555555
Q ss_pred CccccccCCCccchHHHHHHHHccCccchhccCchHHHHH-HHHHhhcCC
Q 002048 698 SPDSWKRSSNVPALVRLLQAFLQKVPREIAQEGKLREVLG-IFNMLVLSP 746 (975)
Q Consensus 698 ~~~l~~~~~~l~~~~~~L~~~i~~~~~~~~~~~~~~~il~-i~~~ll~~~ 746 (975)
. +..+=..++.+|+..+..-+...+. +|+..|++ +|+++=+++
T Consensus 733 a-----Ska~Dh~GF~LLn~i~~~~~~~~~~-py~k~i~~llf~Rlqnsk 776 (960)
T KOG1992|consen 733 A-----SKANDHHGFYLLNTIIESIPPNELA-PYMKQIFGLLFQRLQNSK 776 (960)
T ss_pred c-----CcccchhHHHHHHHHHhcCCHhhhh-HHHHHHHHHHHHHHhccC
Confidence 3 3445556778888888775554443 47888886 556664444
No 34
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.0057 Score=68.88 Aligned_cols=233 Identities=16% Similarity=0.219 Sum_probs=141.6
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHH
Q 002048 390 VDTRRRIACELLKGIATHYRQHVMETVSVQ-IQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSF 468 (975)
Q Consensus 390 ~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~-i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~ 468 (975)
...+|.+|....+.+..+++......++.. +..+.. ..|+.|.+++.++|++++.-. .++ ++
T Consensus 229 ~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~-------~kWrtK~aslellg~m~~~ap---------~qL-s~ 291 (569)
T KOG1242|consen 229 INKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLE-------AKWRTKMASLELLGAMADCAP---------KQL-SL 291 (569)
T ss_pred chhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHH-------HhhhhHHHHHHHHHHHHHhch---------HHH-HH
Confidence 356899999999999988765444433332 233332 279999999999998875421 223 34
Q ss_pred HHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccc
Q 002048 469 FTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSR 548 (975)
Q Consensus 469 l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~ 548 (975)
....++|.+...-.+.+|-+|..+..++-+|.+.+.......++|.++.+++|+.--+. .|+..+..- .
T Consensus 292 ~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~----e~~~~L~~t-------t 360 (569)
T KOG1242|consen 292 CLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTP----ECLDSLGAT-------T 360 (569)
T ss_pred HHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchH----HHHHhhcce-------e
Confidence 44556777764323369999999999999999987656699999999999999863221 123332222 1
Q ss_pred cccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh-h--ccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHH
Q 002048 549 YNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG-V--AEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYL 625 (975)
Q Consensus 549 ~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~-~--~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~ 625 (975)
|....-.|-+.-++.-|-.-+.+.+..........+..... . ...+.||.+.++.. ++.....+ .|..+...
T Consensus 361 FV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~----lk~~~~d~-~PEvR~va 435 (569)
T KOG1242|consen 361 FVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPG----LKENLDDA-VPEVRAVA 435 (569)
T ss_pred eeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhH----HHHHhcCC-ChhHHHHH
Confidence 22222234444444444444433322111111222222222 2 34566776655544 55566677 78878888
Q ss_pred HHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhcc
Q 002048 626 FESVAVLVRRACQRDPSLISAFEASILPSLQIILQND 662 (975)
Q Consensus 626 ~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~ 662 (975)
..+++++++.++.. -...+.|.+...+...
T Consensus 436 arAL~~l~e~~g~~-------~f~d~~p~l~e~~~~~ 465 (569)
T KOG1242|consen 436 ARALGALLERLGEV-------SFDDLIPELSETLTSE 465 (569)
T ss_pred HHHHHHHHHHHHhh-------cccccccHHHHhhccc
Confidence 88999999988321 1156677777766443
No 35
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.51 E-value=0.38 Score=56.77 Aligned_cols=243 Identities=16% Similarity=0.240 Sum_probs=127.2
Q ss_pred CcchhHhhHHHHHHHhhc-cCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHH
Q 002048 484 AFPMLKAGALKFFTMFRI-QIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLM 562 (975)
Q Consensus 484 ~~~~Lr~ra~~~l~~f~~-~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il 562 (975)
..+.+|.+|+..+.-|.+ +.-.+..+.++.++++...+.+--|-.--..||...+... +.|. ......+-+..
T Consensus 503 ~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~d-----pef~-as~~skI~P~~ 576 (1005)
T KOG2274|consen 503 VPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLD-----PEFA-ASMESKICPLT 576 (1005)
T ss_pred CCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccC-----hhhh-hhhhcchhHHH
Confidence 467889999988888774 2223566777777777777654334333445556655553 2232 22233333334
Q ss_pred HHHHHhcCCCCchhhHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHH-hCCCCCchhHHHHHHHHHHHHHhhhcCc
Q 002048 563 TSLFNAFKFPESEENQYIMKCIMRVLGVAEISNEVAAPCISGLTSILNEVC-KNPKSPIFNHYLFESVAVLVRRACQRDP 641 (975)
Q Consensus 563 ~~L~~ll~~~~~~~~~~l~~~l~~vi~~~~~i~p~~~~l~~~L~~~l~~~~-~~~~~~~~~~~~~e~l~~li~~~~~~~~ 641 (975)
-.+|.-..+-. ......-+++-.+++..+.-.|+...++..++.+++.-. ++| +......++.|+++++.- -|
T Consensus 577 i~lF~k~s~DP-~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~~~~~--~~l~~~aidvLttvvr~t---p~ 650 (1005)
T KOG2274|consen 577 INLFLKYSEDP-QVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNADKAP--AGLCAIAIDVLTTVLRNT---PS 650 (1005)
T ss_pred HHHHHHhcCCc-hHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcccccC--chhhHHHHHHHHHHHhcC---CC
Confidence 44443322221 112222223333333233334555555555555443211 122 233457888999999984 34
Q ss_pred chHHHHHHhhHHHHHHHH-hcccccchHHHHHHHHHHHHhcCC-------CCchhHH---HHHHhhcCccccccCCCccc
Q 002048 642 SLISAFEASILPSLQIIL-QNDVTEFLPYAFQLLAQLIELNRP-------PLSSNYM---QIFNLLLSPDSWKRSSNVPA 710 (975)
Q Consensus 642 ~~~~~l~~~l~P~i~~il-~~~~~~~~~~~l~ll~~ll~~~~~-------~~~~~~~---~lf~~l~~~~l~~~~~~l~~ 710 (975)
.....+...++|.+..+. ..+..+.+-.+-+.+..++...+. +.+-.+| +....+++|..-++.+ . .
T Consensus 651 pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a-~-~ 728 (1005)
T KOG2274|consen 651 PLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAA-A-F 728 (1005)
T ss_pred CccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHH-H-H
Confidence 477778888888887764 445556677777888888776431 1222244 4444555543211111 1 3
Q ss_pred hHHHHHHHHccCccchhccCchHHHH-HHHHHh
Q 002048 711 LVRLLQAFLQKVPREIAQEGKLREVL-GIFNML 742 (975)
Q Consensus 711 ~~~~L~~~i~~~~~~~~~~~~~~~il-~i~~~l 742 (975)
+.+++-..|.+.+.++-.+ +..|+ .++.|+
T Consensus 729 VG~lV~tLit~a~~el~~n--~d~IL~Avisrm 759 (1005)
T KOG2274|consen 729 VGPLVLTLITHASSELGPN--LDQILRAVISRL 759 (1005)
T ss_pred HhHHHHHHHHHHHHHhchh--HHHHHHHHHHHH
Confidence 4466666666666655433 34444 344444
No 36
>PTZ00429 beta-adaptin; Provisional
Probab=97.48 E-value=0.14 Score=61.76 Aligned_cols=124 Identities=14% Similarity=0.122 Sum_probs=83.1
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHH
Q 002048 391 DTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFT 470 (975)
Q Consensus 391 ~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~ 470 (975)
...|.+...++..+. .|.++...+.+.+. .++ +++...|--+|..+...+.. .-+..-...
T Consensus 47 ~~kk~alKkvIa~mt--~G~DvS~LF~dVvk-~~~------S~d~elKKLvYLYL~~ya~~----------~pelalLaI 107 (746)
T PTZ00429 47 YRKKAAVKRIIANMT--MGRDVSYLFVDVVK-LAP------STDLELKKLVYLYVLSTARL----------QPEKALLAV 107 (746)
T ss_pred HHHHHHHHHHHHHHH--CCCCchHHHHHHHH-HhC------CCCHHHHHHHHHHHHHHccc----------ChHHHHHHH
Confidence 334444444444443 25666665555554 332 45677777777666655421 112223344
Q ss_pred HhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHcc
Q 002048 471 SVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQV 540 (975)
Q Consensus 471 ~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~ 540 (975)
+.+..++++ +.|++|+-|+.+++..+.. +....+++.+.++|.|+++-||-.|+.|+.++...
T Consensus 108 Ntl~KDl~d----~Np~IRaLALRtLs~Ir~~---~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~ 170 (746)
T PTZ00429 108 NTFLQDTTN----SSPVVRALAVRTMMCIRVS---SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHD 170 (746)
T ss_pred HHHHHHcCC----CCHHHHHHHHHHHHcCCcH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 666677776 5799999999998887663 67888888999999999999999999999987664
No 37
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.04 Score=67.94 Aligned_cols=344 Identities=11% Similarity=0.127 Sum_probs=187.9
Q ss_pred CCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhh---ccCCHhHH
Q 002048 432 VANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFR---IQIPKIHA 508 (975)
Q Consensus 432 ~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~---~~~~~~~~ 508 (975)
+.-|..|-+|-+-+|+++..-. ..+++++.+.|.-.....- ++.+-++..-...-+... +..-.+++
T Consensus 968 ~A~wnSk~GaAfGf~~i~~~a~---------~kl~p~l~kLIPrLyRY~y-DP~~~Vq~aM~sIW~~Li~D~k~~vd~y~ 1037 (1702)
T KOG0915|consen 968 NATWNSKKGAAFGFGAIAKQAG---------EKLEPYLKKLIPRLYRYQY-DPDKKVQDAMTSIWNALITDSKKVVDEYL 1037 (1702)
T ss_pred hchhhcccchhhchHHHHHHHH---------HhhhhHHHHhhHHHhhhcc-CCcHHHHHHHHHHHHHhccChHHHHHHHH
Confidence 3569999999999999987541 3367777665433333321 134444433222111211 12235789
Q ss_pred HhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchh---hHHHHHHHH
Q 002048 509 FQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEE---NQYIMKCIM 585 (975)
Q Consensus 509 ~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~---~~~l~~~l~ 585 (975)
.+++.-++..|.+..-.||..+|.||..++.-. +.+.+...++.+...+|..+++..+.. -+...+++.
T Consensus 1038 neIl~eLL~~lt~kewRVReasclAL~dLl~g~--------~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~ls 1109 (1702)
T KOG0915|consen 1038 NEILDELLVNLTSKEWRVREASCLALADLLQGR--------PFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALS 1109 (1702)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHcCC--------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999864 246788889999999999997764332 224456676
Q ss_pred HHHh-hccchhhh-HHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhccc
Q 002048 586 RVLG-VAEISNEV-AAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDV 663 (975)
Q Consensus 586 ~vi~-~~~~i~p~-~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~~ 663 (975)
.++. .++-..+- +.+.+..+.+.++.----..-+..+-..+.++..++++ .+.......+.++|.+..++..-
T Consensus 1110 Kl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Ks----sg~~lkP~~~~LIp~ll~~~s~l- 1184 (1702)
T KOG0915|consen 1110 KLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKS----SGKELKPHFPKLIPLLLNAYSEL- 1184 (1702)
T ss_pred HHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHh----chhhhcchhhHHHHHHHHHcccc-
Confidence 6666 44433332 34445544444421000000011122334444444444 45566667777788777765432
Q ss_pred ccchHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCccccccCCCccchHHHHHHHHccCccchhccCchHHHHHHHHHhh
Q 002048 664 TEFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKRSSNVPALVRLLQAFLQKVPREIAQEGKLREVLGIFNMLV 743 (975)
Q Consensus 664 ~~~~~~~l~ll~~ll~~~~~~~~~~~~~lf~~l~~~~l~~~~~~l~~~~~~L~~~i~~~~~~~~~~~~~~~il~i~~~ll 743 (975)
-+.++.-++.-+.+.. .+.+- .+-. ..-.+..++++ ++-.|.+--..++.. ....+.+.....+
T Consensus 1185 ---E~~vLnYls~r~~~~e---~ealD----t~R~-s~aksspmmeT----i~~ci~~iD~~vLee-lip~l~el~R~sV 1248 (1702)
T KOG0915|consen 1185 ---EPQVLNYLSLRLINIE---TEALD----TLRA-SAAKSSPMMET----INKCINYIDISVLEE-LIPRLTELVRGSV 1248 (1702)
T ss_pred ---chHHHHHHHHhhhhhH---HHHHH----HHHH-hhhcCCcHHHH----HHHHHHhhhHHHHHH-HHHHHHHHHhccC
Confidence 2233333332221110 00000 0000 00011123333 333333322222211 2222333322222
Q ss_pred cCCCCcchHHHHHHHHHHhcchhhHhhhHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHhChHHHHHHHhh
Q 002048 744 LSPSTDEQGFYVLNTIVESLEYGVIAQFVPHIWGVLFTRLQNKRTVKFVKSLLIFMSLFLVKHGPENLVNTMNA 817 (975)
Q Consensus 744 ~~~~~~~~a~~ll~~ii~~~~~~~~~~~l~~il~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~L~~ 817 (975)
+-. +...+...+..+...++. -..||...++++++..+.+ +.+...+.+-....+++-...|+++...++.
T Consensus 1249 gl~-Tkvg~A~fI~~L~~r~~~-emtP~sgKll~al~~g~~d-RNesv~kafAsAmG~L~k~Ss~dq~qKLie~ 1319 (1702)
T KOG0915|consen 1249 GLG-TKVGCASFISLLVQRLGS-EMTPYSGKLLRALFPGAKD-RNESVRKAFASAMGYLAKFSSPDQMQKLIET 1319 (1702)
T ss_pred CCC-cchhHHHHHHHHHHHhcc-ccCcchhHHHHHHhhcccc-ccHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 111 123334556777777764 4789999999999999887 5566666776666676655577777777654
No 38
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.66 Score=57.93 Aligned_cols=310 Identities=15% Similarity=0.167 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHHHHHHHhH-HHHHhhHHHHHHHHHHHHhccCCC--CcchHHHHHHHHHHHhh-chhhhhhcccCCCch
Q 002048 276 VDGLRAAVCENISLYMKMNE-EEFQGYLNDFALAVWTLLGNVSQS--SSRDSLAVTAIKFLTNV-STSVHHTLFAGEGVI 351 (975)
Q Consensus 276 ~~~~k~~~~~~l~~~~~~~~-~~f~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~l~fl~~~-~~~~~~~~~~~~~~l 351 (975)
.|++|..+|-.+..+.++.+ +.+...++. +|..+..+-.+ ..-.+....+..+++.+ -+.. .. .+...-
T Consensus 1052 ewRVReasclAL~dLl~g~~~~~~~e~lpe----lw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~--d~-~~~~~~ 1124 (1702)
T KOG0915|consen 1052 EWRVREASCLALADLLQGRPFDQVKEKLPE----LWEAAFRVMDDIKESVREAADKAARALSKLCVRIC--DV-TNGAKG 1124 (1702)
T ss_pred hHHHHHHHHHHHHHHHcCCChHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--cc-CCcccH
Confidence 39999999999999988765 445566654 45554442111 01233445555666654 1100 01 112222
Q ss_pred hhHHHHhhcccCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCC
Q 002048 352 PQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANP 431 (975)
Q Consensus 352 ~~l~~~li~~~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~ 431 (975)
.+++. +|+|.+- + +--.++...+|+.+...+.+|++..|+...|.+-..+.-.++.|..
T Consensus 1125 ~~~l~-~iLPfLl---------~---------~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~-- 1183 (1702)
T KOG0915|consen 1125 KEALD-IILPFLL---------D---------EGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSE-- 1183 (1702)
T ss_pred HHHHH-HHHHHHh---------c---------cCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccc--
Confidence 33333 4446543 1 0013566789999999999999999998888777777777776533
Q ss_pred CCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhH
Q 002048 432 VANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQF 511 (975)
Q Consensus 432 ~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~ 511 (975)
.++-..-+-++++.+.-.+.+ +. .. ....+ ..|.. ..++..-+.++.+.+.++
T Consensus 1184 lE~~vLnYls~r~~~~e~eal-------------Dt-~R---~s~ak-----sspmm-----eTi~~ci~~iD~~vLeel 1236 (1702)
T KOG0915|consen 1184 LEPQVLNYLSLRLINIETEAL-------------DT-LR---ASAAK-----SSPMM-----ETINKCINYIDISVLEEL 1236 (1702)
T ss_pred cchHHHHHHHHhhhhhHHHHH-------------HH-HH---Hhhhc-----CCcHH-----HHHHHHHHhhhHHHHHHH
Confidence 234455555555533222111 00 00 00001 23332 344444455566889999
Q ss_pred HHHHHHhhcCC-CchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh-
Q 002048 512 FPDLVRFLGAE-SNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG- 589 (975)
Q Consensus 512 ~~~l~~~L~~~-~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~- 589 (975)
.|-+...++.+ .++-|+.+|.-+..+..- -..++.||...++..||..+++-.+..+.....+...++.
T Consensus 1237 ip~l~el~R~sVgl~Tkvg~A~fI~~L~~r---------~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~ 1307 (1702)
T KOG0915|consen 1237 IPRLTELVRGSVGLGTKVGCASFISLLVQR---------LGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKF 1307 (1702)
T ss_pred HHHHHHHHhccCCCCcchhHHHHHHHHHHH---------hccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhc
Confidence 99999999987 677788777766654432 1468999999999999998877432222222223322322
Q ss_pred hccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhc
Q 002048 590 VAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQN 661 (975)
Q Consensus 590 ~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~ 661 (975)
-+++ .+..+++.+..-+ ..+.++.. ....-++..+. ..+++.+....+.++|.+--....
T Consensus 1308 Ss~d---q~qKLie~~l~~~--l~k~es~~---siscatis~Ia----n~s~e~Lkn~asaILPLiFLa~~e 1367 (1702)
T KOG0915|consen 1308 SSPD---QMQKLIETLLADL--LGKDESLK---SISCATISNIA----NYSQEMLKNYASAILPLIFLAMHE 1367 (1702)
T ss_pred CChH---HHHHHHHHHHHHH--hccCCCcc---chhHHHHHHHH----HhhHHHHHhhHHHHHHHHHHHHhH
Confidence 1121 1222233322211 11233222 12222222222 235678888889999988776543
No 39
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.20 E-value=0.0022 Score=55.67 Aligned_cols=77 Identities=17% Similarity=0.323 Sum_probs=62.9
Q ss_pred HhhHHHHHHHhhccC---CHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHH
Q 002048 489 KAGALKFFTMFRIQI---PKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSL 565 (975)
Q Consensus 489 r~ra~~~l~~f~~~~---~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L 565 (975)
|..+++.++..+..+ ..+++..+++.++.+++|++..||.+||.||..+.... ++.+.||++.++..|
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~---------~~~~l~~f~~IF~~L 73 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVA---------RGEILPYFNEIFDAL 73 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Confidence 444556666554333 34789999999999999999999999999999988753 568889999999999
Q ss_pred HHhcCCCCc
Q 002048 566 FNAFKFPES 574 (975)
Q Consensus 566 ~~ll~~~~~ 574 (975)
++++.+++.
T Consensus 74 ~kl~~D~d~ 82 (97)
T PF12755_consen 74 CKLSADPDE 82 (97)
T ss_pred HHHHcCCch
Confidence 999988753
No 40
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.19 Score=57.01 Aligned_cols=243 Identities=14% Similarity=0.187 Sum_probs=143.0
Q ss_pred HhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 002048 505 KIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCI 584 (975)
Q Consensus 505 ~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l 584 (975)
+..+..++|.++.+..|....||-.|..|.+.+... ++...++-.++.++..+..- +-. +....++.+
T Consensus 211 EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~--------~~~~aVK~llpsll~~l~~~-kWr---tK~aslell 278 (569)
T KOG1242|consen 211 EPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRC--------LSAYAVKLLLPSLLGSLLEA-KWR---TKMASLELL 278 (569)
T ss_pred CchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHh--------cCcchhhHhhhhhHHHHHHH-hhh---hHHHHHHHH
Confidence 467899999999999999999999999998887765 34556777788888887754 222 122233333
Q ss_pred HHHHh-hccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhccc
Q 002048 585 MRVLG-VAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDV 663 (975)
Q Consensus 585 ~~vi~-~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~~ 663 (975)
..+.. ....+.-+.++++..+...+| ...+..+..-.+||..+.+.+ .+|+ .+.++|.+...+....
T Consensus 279 g~m~~~ap~qLs~~lp~iiP~lsevl~-----DT~~evr~a~~~~l~~~~svi--dN~d-----I~~~ip~Lld~l~dp~ 346 (569)
T KOG1242|consen 279 GAMADCAPKQLSLCLPDLIPVLSEVLW-----DTKPEVRKAGIETLLKFGSVI--DNPD-----IQKIIPTLLDALADPS 346 (569)
T ss_pred HHHHHhchHHHHHHHhHhhHHHHHHHc-----cCCHHHHHHHHHHHHHHHHhh--ccHH-----HHHHHHHHHHHhcCcc
Confidence 32222 344444445555555555443 233455556777777777765 3554 5567888888886543
Q ss_pred ccchHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCcccccc-CCCccchHHHHHHHHccC--ccchhccCchHHHHHHHH
Q 002048 664 TEFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKR-SSNVPALVRLLQAFLQKV--PREIAQEGKLREVLGIFN 740 (975)
Q Consensus 664 ~~~~~~~l~ll~~ll~~~~~~~~~~~~~lf~~l~~~~l~~~-~~~l~~~~~~L~~~i~~~--~~~~~~~~~~~~il~i~~ 740 (975)
...+++++.+......+. +.+.-..+.-++++-.+-++ .+.-...+.+++|....- +..+. +|+..++.-+.
T Consensus 347 -~~~~e~~~~L~~ttFV~~--V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~la--pfl~~Llp~lk 421 (569)
T KOG1242|consen 347 -CYTPECLDSLGATTFVAE--VDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLA--PFLPSLLPGLK 421 (569)
T ss_pred -cchHHHHHhhcceeeeee--ecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHh--hhHHHHhhHHH
Confidence 356677766654322221 22222233333333223232 234455566666655544 33333 58888887777
Q ss_pred HhhcCCCCc--chHHHHHHHHHHhcchhhHhhhHHHHH
Q 002048 741 MLVLSPSTD--EQGFYVLNTIVESLEYGVIAQFVPHIW 776 (975)
Q Consensus 741 ~ll~~~~~~--~~a~~ll~~ii~~~~~~~~~~~l~~il 776 (975)
+.+.+...+ ..+.+.++.+++.++...+....|.+.
T Consensus 422 ~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~ 459 (569)
T KOG1242|consen 422 ENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELS 459 (569)
T ss_pred HHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHH
Confidence 776655443 456788888888875433333333333
No 41
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.99 E-value=0.73 Score=57.53 Aligned_cols=312 Identities=14% Similarity=0.159 Sum_probs=166.7
Q ss_pred hHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHh
Q 002048 394 RRIACELLKGIATHYR-QHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSV 472 (975)
Q Consensus 394 R~~A~~ll~~L~~~~~-~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~ 472 (975)
+..|......|+.+++ ...+...+..|-..+. .+....|--|+.++..+.+.-.. +-...++ ...
T Consensus 794 ~~~a~li~~~la~~r~f~~sfD~yLk~Il~~l~------e~~ialRtkAlKclS~ive~Dp~----vL~~~dv----q~~ 859 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHARSFSQSFDPYLKLILSVLG------ENAIALRTKALKCLSMIVEADPS----VLSRPDV----QEA 859 (1692)
T ss_pred chhHHHHHHHHHhhhHHHHhhHHHHHHHHHHhc------CchHHHHHHHHHHHHHHHhcChH----hhcCHHH----HHH
Confidence 4445555566665543 2233444444444443 22356677788888777543200 0001112 223
Q ss_pred cccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccc
Q 002048 473 IVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSA 552 (975)
Q Consensus 473 v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~ 552 (975)
|-.-+.+ ++..+|-.|..++|+|.-.. ++...++|..+.+...|+...||-.+..-++.+|.-. +.|
T Consensus 860 Vh~R~~D----ssasVREAaldLvGrfvl~~-~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~-----pdf--- 926 (1692)
T KOG1020|consen 860 VHGRLND----SSASVREAALDLVGRFVLSI-PELIFQYYDQIIERILDTGVSVRKRVIKILRDICEET-----PDF--- 926 (1692)
T ss_pred HHHhhcc----chhHHHHHHHHHHhhhhhcc-HHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC-----CCh---
Confidence 3334444 58899999999999996432 4789999999999999999999999998888877642 112
Q ss_pred cccchHHHHHHHHHHhcCCCCchh---hHHHHHHHH-------------------------------------------H
Q 002048 553 DITPYLSVLMTSLFNAFKFPESEE---NQYIMKCIM-------------------------------------------R 586 (975)
Q Consensus 553 ~l~p~l~~il~~L~~ll~~~~~~~---~~~l~~~l~-------------------------------------------~ 586 (975)
..+.+.+.+++..+..+| .+.+.++++ .
T Consensus 927 ------~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ 1000 (1692)
T KOG1020|consen 927 ------SKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDH 1000 (1692)
T ss_pred ------hhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHH
Confidence 222222222222111110 011111111 1
Q ss_pred HHh------hccchhhhHHHHHHHHHHHHHHH-----HhCC----CCCchhHHHHHHHHHHHHHhhhcCcchHH-HHHHh
Q 002048 587 VLG------VAEISNEVAAPCISGLTSILNEV-----CKNP----KSPIFNHYLFESVAVLVRRACQRDPSLIS-AFEAS 650 (975)
Q Consensus 587 vi~------~~~~i~p~~~~l~~~L~~~l~~~-----~~~~----~~~~~~~~~~e~l~~li~~~~~~~~~~~~-~l~~~ 650 (975)
++. ....+.|.+...+.+...++... ..-. .+..-...++.++++|... |...|..+. +....
T Consensus 1001 ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~F-skirP~Llt~khv~t 1079 (1692)
T KOG1020|consen 1001 ILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAYLSTLFVF-SKIRPQLLTKKHVIT 1079 (1692)
T ss_pred HHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHH-HhcCchhccHHHHHH
Confidence 111 01112222222222222111111 0000 0011124677788877766 356777666 77888
Q ss_pred hHHHHHHHHh-cccccchHHHHHHHHHHHHhcCCCCchhHH-HHHHhhcCccccccCCCccchHHHHHHHHccCccchhc
Q 002048 651 ILPSLQIILQ-NDVTEFLPYAFQLLAQLIELNRPPLSSNYM-QIFNLLLSPDSWKRSSNVPALVRLLQAFLQKVPREIAQ 728 (975)
Q Consensus 651 l~P~i~~il~-~~~~~~~~~~l~ll~~ll~~~~~~~~~~~~-~lf~~l~~~~l~~~~~~l~~~~~~L~~~i~~~~~~~~~ 728 (975)
+.|++..--. .....|..++.+++..++..-+. +++.+. .|=..++......+...+..++.|+.+...+-.+.+-
T Consensus 1080 L~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~-~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~- 1157 (1692)
T KOG1020|consen 1080 LQPYLTSKASTIEEAQFLYYVIQILECVLPLVAN-PSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAK- 1157 (1692)
T ss_pred hhhHHhccccchHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchH-
Confidence 8888876411 12336899999999998877665 676665 3333344433334456788889999998886433332
Q ss_pred cCchHHHHHHHHHhh
Q 002048 729 EGKLREVLGIFNMLV 743 (975)
Q Consensus 729 ~~~~~~il~i~~~ll 743 (975)
.+..+++.|.+.+
T Consensus 1158 --~v~~cf~~~~k~l 1170 (1692)
T KOG1020|consen 1158 --VVKACFSCYLKLL 1170 (1692)
T ss_pred --HHHHHHHHHHHHH
Confidence 2344454444444
No 42
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.99 E-value=0.5 Score=55.20 Aligned_cols=191 Identities=14% Similarity=0.175 Sum_probs=110.7
Q ss_pred HHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCH--h--HHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCC
Q 002048 469 FTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPK--I--HAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEG 544 (975)
Q Consensus 469 l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~--~--~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~ 544 (975)
+..++...|.. +++.+|.-+++.+++....-.. + .-..+++.++.||.+++..|...|+.+|..+......
T Consensus 78 ~~~~L~~gL~h----~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~- 152 (503)
T PF10508_consen 78 YQPFLQRGLTH----PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG- 152 (503)
T ss_pred HHHHHHHHhcC----CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh-
Confidence 33444555655 5899999999999997643211 1 1256899999999999999999999999998875320
Q ss_pred CccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccchhhhHHH--HHHHHHHHHHHHHhCCCCCchh
Q 002048 545 GKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLGVAEISNEVAAP--CISGLTSILNEVCKNPKSPIFN 622 (975)
Q Consensus 545 ~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~~~~~i~p~~~~--l~~~L~~~l~~~~~~~~~~~~~ 622 (975)
....+.+.. +..|-.++........-++.+.+..+...+++...+... +++.+ +. ..++ +|....
T Consensus 153 -----~~~l~~~~~---~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~l---l~-eL~~-dDiLvq 219 (503)
T PF10508_consen 153 -----LEQLFDSNL---LSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLL---LK-ELDS-DDILVQ 219 (503)
T ss_pred -----HHHHhCcch---HHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHH---HH-HhcC-ccHHHH
Confidence 011223333 555555555532222334455544443334443333222 23332 22 2234 566666
Q ss_pred HHHHHHHHHHHHHhhhcCcchHHHHHH-hhHHHHHHHHhccccc------chHHHHHHHHHHHHhcC
Q 002048 623 HYLFESVAVLVRRACQRDPSLISAFEA-SILPSLQIILQNDVTE------FLPYAFQLLAQLIELNR 682 (975)
Q Consensus 623 ~~~~e~l~~li~~~~~~~~~~~~~l~~-~l~P~i~~il~~~~~~------~~~~~l~ll~~ll~~~~ 682 (975)
-.++|+++.+... +....-+++ .+++.+...+.....+ +++..+...+.+...++
T Consensus 220 lnalell~~La~~-----~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~ 281 (503)
T PF10508_consen 220 LNALELLSELAET-----PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSP 281 (503)
T ss_pred HHHHHHHHHHHcC-----hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcCh
Confidence 7888888887663 233333333 4777777777554332 34556666666655433
No 43
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.90 E-value=1.3 Score=51.21 Aligned_cols=247 Identities=13% Similarity=0.163 Sum_probs=143.4
Q ss_pred HhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccc-hHHHHHHHHHHhcCCCCchhhHHHHHHHHHH
Q 002048 509 FQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITP-YLSVLMTSLFNAFKFPESEENQYIMKCIMRV 587 (975)
Q Consensus 509 ~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p-~l~~il~~L~~ll~~~~~~~~~~l~~~l~~v 587 (975)
..++.-++.-+.|...+-|...+.++.+++..- ...++.. .-..++..++..+++.+..+. .++..+..+
T Consensus 715 ~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~l--------g~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V 785 (1172)
T KOG0213|consen 715 DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRL--------GAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTV 785 (1172)
T ss_pred hHHHHHHhhhhccccHHHHHHHHHHHHHHHhcc--------ccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHH
Confidence 345566667788888889999999999988753 2333332 345677788877766543332 344677777
Q ss_pred Hh-hccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhccccc-
Q 002048 588 LG-VAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDVTE- 665 (975)
Q Consensus 588 i~-~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~~~~- 665 (975)
.. ++..+.||.+++++.+ +|.+ +|+ .+.......+.++.++..+ +... ++.++-.+..+|-....+
T Consensus 786 ~~~lg~r~kpylpqi~sti---L~rL-nnk-sa~vRqqaadlis~la~Vl-ktc~------ee~~m~~lGvvLyEylgee 853 (1172)
T KOG0213|consen 786 VNALGGRVKPYLPQICSTI---LWRL-NNK-SAKVRQQAADLISSLAKVL-KTCG------EEKLMGHLGVVLYEYLGEE 853 (1172)
T ss_pred HHHHhhccccchHHHHHHH---HHHh-cCC-ChhHHHHHHHHHHHHHHHH-Hhcc------HHHHHHHhhHHHHHhcCcc
Confidence 77 9999999999888765 3333 222 2445566777777776665 2211 344455555555444443
Q ss_pred ---chHHHHHHHHHHHHhcCC-CCchhHHHHHHhhcCccccccC--CCccchHHHHHHHHccCccchhccCchHHHHHHH
Q 002048 666 ---FLPYAFQLLAQLIELNRP-PLSSNYMQIFNLLLSPDSWKRS--SNVPALVRLLQAFLQKVPREIAQEGKLREVLGIF 739 (975)
Q Consensus 666 ---~~~~~l~ll~~ll~~~~~-~~~~~~~~lf~~l~~~~l~~~~--~~l~~~~~~L~~~i~~~~~~~~~~~~~~~il~i~ 739 (975)
.++.++--+.++...... ...|....++|.+.. ++ ++. ....++..++...-.+||+.+-....+..-|+.+
T Consensus 854 ypEvLgsILgAikaI~nvigm~km~pPi~dllPrltP-IL-knrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLl 931 (1172)
T KOG0213|consen 854 YPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTP-IL-KNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELL 931 (1172)
T ss_pred cHHHHHHHHHHHHHHHHhccccccCCChhhhcccchH-hh-hhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHH
Confidence 444445555555544321 133444556666554 22 322 2455677778878888888665444555555655
Q ss_pred HHhhcCCC-CcchHHHHHHHHHHhcchhhHhhhHHHHHHHHHHHhhc
Q 002048 740 NMLVLSPS-TDEQGFYVLNTIVESLEYGVIAQFVPHIWGVLFTRLQN 785 (975)
Q Consensus 740 ~~ll~~~~-~~~~a~~ll~~ii~~~~~~~~~~~l~~il~~~l~~L~~ 785 (975)
.-+-+.+. ....|.+-.+.|.+..+. .+++..++..|..
T Consensus 932 elLkahkK~iRRaa~nTfG~IakaIGP-------qdVLatLlnnLkv 971 (1172)
T KOG0213|consen 932 ELLKAHKKEIRRAAVNTFGYIAKAIGP-------QDVLATLLNNLKV 971 (1172)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHhcCH-------HHHHHHHHhcchH
Confidence 54443322 234555666666666542 2455566665543
No 44
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.14 Score=57.59 Aligned_cols=323 Identities=15% Similarity=0.152 Sum_probs=167.0
Q ss_pred HHhHHHHHHHhhc-CCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHH
Q 002048 508 AFQFFPDLVRFLG-AESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMR 586 (975)
Q Consensus 508 ~~~~~~~l~~~L~-~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~ 586 (975)
...++|.++.+|. +.+.-+|..||+||..+...... ..+..+....-++ +..++......-.+..+.++..
T Consensus 107 ~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse-----~T~~vv~agavp~---fi~Ll~s~~~~v~eQavWALgN 178 (514)
T KOG0166|consen 107 QSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSE-----QTKVVVDAGAVPI---FIQLLSSPSADVREQAVWALGN 178 (514)
T ss_pred HcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchh-----hccccccCCchHH---HHHHhcCCcHHHHHHHHHHHhc
Confidence 4478899999997 45688999999999998876532 1222222222233 4555566654455665666665
Q ss_pred HHhhccchhhhHHH--HHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhh-cCcchHHHHHHhhHHHHHHHHhccc
Q 002048 587 VLGVAEISNEVAAP--CISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQ-RDPSLISAFEASILPSLQIILQNDV 663 (975)
Q Consensus 587 vi~~~~~i~p~~~~--l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~-~~~~~~~~l~~~l~P~i~~il~~~~ 663 (975)
++.-+...+.|... ++..|..++ +++++ ..++..+.-.++.+|. .+|..-..-...++|.+...+....
T Consensus 179 Iagds~~~Rd~vl~~g~l~pLl~~l-----~~~~~---~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D 250 (514)
T KOG0166|consen 179 IAGDSPDCRDYVLSCGALDPLLRLL-----NKSDK---LSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTD 250 (514)
T ss_pred cccCChHHHHHHHhhcchHHHHHHh-----ccccc---hHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCC
Confidence 54422223323211 233333322 22222 1333333333334443 2355555566778999999998877
Q ss_pred ccchHHHHHHHHHHHHhcCCCCchhHH--HHHHhhcCccccccCC-CccchHHHHHHHHccCccchhccCchHHHHHHHH
Q 002048 664 TEFLPYAFQLLAQLIELNRPPLSSNYM--QIFNLLLSPDSWKRSS-NVPALVRLLQAFLQKVPREIAQEGKLREVLGIFN 740 (975)
Q Consensus 664 ~~~~~~~l~ll~~ll~~~~~~~~~~~~--~lf~~l~~~~l~~~~~-~l~~~~~~L~~~i~~~~~~~~~~~~~~~il~i~~ 740 (975)
.+...++.-.++.+....+. -...+. ...|.++.. +-.... ...++++.+-| |.-|.+...+.=--...+..+.
T Consensus 251 ~~Vl~Da~WAlsyLsdg~ne-~iq~vi~~gvv~~LV~l-L~~~~~~v~~PaLRaiGN-IvtG~d~QTq~vi~~~~L~~l~ 327 (514)
T KOG0166|consen 251 EEVLTDACWALSYLTDGSNE-KIQMVIDAGVVPRLVDL-LGHSSPKVVTPALRAIGN-IVTGSDEQTQVVINSGALPVLS 327 (514)
T ss_pred HHHHHHHHHHHHHHhcCChH-HHHHHHHccchHHHHHH-HcCCCcccccHHHhhccc-eeeccHHHHHHHHhcChHHHHH
Confidence 78888888888877766543 111111 233333331 112222 33355666666 4455554332100112233444
Q ss_pred HhhcCCCC---cchHHHHHHHHHHhcchhhHhhhH-HHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHhChHHHHHHHh
Q 002048 741 MLVLSPST---DEQGFYVLNTIVESLEYGVIAQFV-PHIWGVLFTRLQNKRTVKFVKSLLIFMSLFLVKHGPENLVNTMN 816 (975)
Q Consensus 741 ~ll~~~~~---~~~a~~ll~~ii~~~~~~~~~~~l-~~il~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~L~ 816 (975)
.++..... ...||..+.-|..-- .++++.++ ..++..++.-|++.+- +..+.-...++-++.-.+++ -+.+|-
T Consensus 328 ~ll~~s~~~~ikkEAcW~iSNItAG~-~~qiqaVida~l~p~Li~~l~~~ef-~~rKEAawaIsN~ts~g~~~-qi~yLv 404 (514)
T KOG0166|consen 328 NLLSSSPKESIKKEACWTISNITAGN-QEQIQAVIDANLIPVLINLLQTAEF-DIRKEAAWAISNLTSSGTPE-QIKYLV 404 (514)
T ss_pred HHhccCcchhHHHHHHHHHHHhhcCC-HHHHHHHHHcccHHHHHHHHhccch-HHHHHHHHHHHhhcccCCHH-HHHHHH
Confidence 45542222 256888887776543 35666655 4677778887777652 22333333333332222333 333443
Q ss_pred hhcchhHHHHHHHHhhcCcccccchhhHHHHHHHHHHHhhcCcc
Q 002048 817 AVQSGIILVILEQIWIPNLKLITGAIEWKLTAVASTRLICESPV 860 (975)
Q Consensus 817 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~K~~~lal~~Ll~~~~~ 860 (975)
+. |.. +-.|+.+ .+....-.+++.-|+..+|..+..
T Consensus 405 ~~--giI-----~plcdlL-~~~D~~ii~v~Ld~l~nil~~~e~ 440 (514)
T KOG0166|consen 405 EQ--GII-----KPLCDLL-TCPDVKIILVALDGLENILKVGEA 440 (514)
T ss_pred Hc--CCc-----hhhhhcc-cCCChHHHHHHHHHHHHHHHHHHH
Confidence 22 322 2234434 333444466677777777766543
No 45
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.62 Score=53.86 Aligned_cols=82 Identities=15% Similarity=0.188 Sum_probs=69.1
Q ss_pred HHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCcccc
Q 002048 470 TSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRY 549 (975)
Q Consensus 470 ~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~ 549 (975)
-+.+-.+|+. ++.++|+..+.|+.+.++. |.+..++|.+..||.+.+.=||-.|..|+-.+...
T Consensus 101 cna~RkDLQH----PNEyiRG~TLRFLckLkE~---ELlepl~p~IracleHrhsYVRrNAilaifsIyk~--------- 164 (948)
T KOG1058|consen 101 CNAYRKDLQH----PNEYIRGSTLRFLCKLKEP---ELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN--------- 164 (948)
T ss_pred HHHHhhhccC----chHhhcchhhhhhhhcCcH---HHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh---------
Confidence 3556677876 4789999999999988875 89999999999999999999999999998887654
Q ss_pred ccccccchHHHHHHHHHHh
Q 002048 550 NSADITPYLSVLMTSLFNA 568 (975)
Q Consensus 550 ~~~~l~p~l~~il~~L~~l 568 (975)
.+.+-|-.|.++...+..
T Consensus 165 -~~~L~pDapeLi~~fL~~ 182 (948)
T KOG1058|consen 165 -FEHLIPDAPELIESFLLT 182 (948)
T ss_pred -hhhhcCChHHHHHHHHHh
Confidence 357888899999998753
No 46
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=96.84 E-value=0.13 Score=58.31 Aligned_cols=220 Identities=20% Similarity=0.292 Sum_probs=131.9
Q ss_pred HHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCC----Cch-hhHHHH
Q 002048 507 HAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFP----ESE-ENQYIM 581 (975)
Q Consensus 507 ~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~----~~~-~~~~l~ 581 (975)
....++..++..+..+.-.=-.+-..|+-|++.. ..+.+.|+...++++|..++... .+- -+.|+.
T Consensus 23 ~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~---------~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylF 93 (435)
T PF03378_consen 23 FAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSV---------LQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLF 93 (435)
T ss_dssp CHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHH---------STTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHH
Confidence 3566667777776543211123445566666654 35688999999999999888433 222 367999
Q ss_pred HHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHh
Q 002048 582 KCIMRVLG-VAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQ 660 (975)
Q Consensus 582 ~~l~~vi~-~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~ 660 (975)
+++..++. ..+.-......+-+.|.+.+..+..+. -..|.-|+|+.++.+++.- . + +........++|.+..---
T Consensus 94 Esi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~d-V~EF~PYvfQIla~Lle~~-~-~-~~~p~~y~~L~~~Ll~p~l 169 (435)
T PF03378_consen 94 ESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQD-VQEFIPYVFQILAQLLELR-P-S-SPLPDAYKQLFPPLLSPAL 169 (435)
T ss_dssp HHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT--TTTHHHHHHHHHHHHHHS-S----S--TTTGGGHHHHTSGGG
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcC-C-C-CCCcHHHHHHHHHHcCcch
Confidence 99998888 333211123345566666666665442 2357779999999999884 2 1 2222223334444432211
Q ss_pred cccccchHHHHHHHHHHHHhcCCCCc-----hhHHHHHHhhcCccccccCCCccchHHHHHHHHccCccchhccCchHHH
Q 002048 661 NDVTEFLPYAFQLLAQLIELNRPPLS-----SNYMQIFNLLLSPDSWKRSSNVPALVRLLQAFLQKVPREIAQEGKLREV 735 (975)
Q Consensus 661 ~~~~~~~~~~l~ll~~ll~~~~~~~~-----~~~~~lf~~l~~~~l~~~~~~l~~~~~~L~~~i~~~~~~~~~~~~~~~i 735 (975)
-+...-+|....++.++++..+..+. ..+..+|..++.. ..+=..++.+|++.+..-|...++. |+..|
T Consensus 170 We~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~s-----k~~D~~gF~LL~~iv~~~p~~~l~~-yl~~I 243 (435)
T PF03378_consen 170 WERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIAS-----KANDHYGFDLLESIVENLPPEALEP-YLKQI 243 (435)
T ss_dssp GGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT------TTCHHHHHHHHHHHHHHS-HHHHGG-GHHHH
T ss_pred hccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCC-----CCcchHHHHHHHHHHHHCCHHHHHH-HHHHH
Confidence 22335678899999999998764231 4455677777652 2233457899999999999877764 88999
Q ss_pred HHH-HHHhhcC
Q 002048 736 LGI-FNMLVLS 745 (975)
Q Consensus 736 l~i-~~~ll~~ 745 (975)
+.+ ++|+-++
T Consensus 244 ~~lll~RLq~s 254 (435)
T PF03378_consen 244 FTLLLTRLQSS 254 (435)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhhC
Confidence 874 4565443
No 47
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=1.3 Score=50.45 Aligned_cols=134 Identities=14% Similarity=0.174 Sum_probs=110.5
Q ss_pred CCChHHHHHHHHHHHHHhcCCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCCCCcCCCCHHHHHHHH
Q 002048 20 SPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPTLAPILDAEKDQIK 99 (975)
Q Consensus 20 s~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~~~~~i~~e~K~~Ir 99 (975)
|.|+..|.+||..|.++...|++.+-+.-++...+.+ --..+|+..|-+.+.++= ++|-+.|-.||
T Consensus 17 s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~p-Ys~mlAst~L~Klvs~~t-------------~lpl~qrldir 82 (1082)
T KOG1410|consen 17 STDPTARHRAEKALAELSESPECLSKCQLLLERGSYP-YSQMLASTCLMKLVSRKT-------------PLPLEQRLDIR 82 (1082)
T ss_pred cCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHcCCC-------------CCcHHHHHHHH
Confidence 5688899999999999999999999998888887655 445667777777776543 58999999999
Q ss_pred HHHHHHHhc-CC---HHHHHHHHHHHHHHhcccCCC------CCCchHHHHHHHhcccccCCChhHHhHHHHHHHHHHHh
Q 002048 100 SLIVGLMLT-ST---PRIQSQLSEALVVVGNHDFPK------HWPTLLPELIANLKDAAQSNNYVSINGILGTANSIFKK 169 (975)
Q Consensus 100 ~~ll~~l~~-~~---~~ir~qla~~i~~Ia~~D~P~------~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i~k~ 169 (975)
.-+++.+.+ .| +-+-..++..++.|-+..|-+ ..-+.+.++...++.+ +......|+++|.+++.+
T Consensus 83 ~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~----~ve~~~igv~iLsqLvqe 158 (1082)
T KOG1410|consen 83 NYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMD----NVEHCIIGVQILSQLVQE 158 (1082)
T ss_pred HHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccC----chHHHHHHHHHHHHHHHH
Confidence 999999988 44 348888999999999887763 2457899999999988 888888899999999987
Q ss_pred hh
Q 002048 170 FR 171 (975)
Q Consensus 170 ~~ 171 (975)
..
T Consensus 159 mN 160 (1082)
T KOG1410|consen 159 MN 160 (1082)
T ss_pred hh
Confidence 64
No 48
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.83 E-value=0.11 Score=56.14 Aligned_cols=189 Identities=18% Similarity=0.207 Sum_probs=120.8
Q ss_pred cccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccc
Q 002048 462 LVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVK 541 (975)
Q Consensus 462 ~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~ 541 (975)
...++.++.+.|.|.+++ .++-+|.+|..++|-|+=. +++...+.++.+.+.++..+..|+..|..++-.++...
T Consensus 21 ~~~l~~ll~~lI~P~v~~----~~~~vR~~al~cLGl~~Ll-d~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~ 95 (298)
T PF12719_consen 21 NISLESLLDSLILPAVQS----SDPAVRELALKCLGLCCLL-DKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTH 95 (298)
T ss_pred cchHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Confidence 345778999999999998 4689999999999998742 23566777788888886669999999999998877653
Q ss_pred cCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHhCCCCCch
Q 002048 542 DEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLGVAEISNEVAAPCISGLTSILNEVCKNPKSPIF 621 (975)
Q Consensus 542 ~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~ 621 (975)
+...+.......-......+++-+.+.+......-.....+.+.+++- ...+.+ .+.++..|.-.+ . +|....
T Consensus 96 g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL-~~~i~~-~~~vL~~Lll~y---F-~p~t~~- 168 (298)
T PF12719_consen 96 GIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLL-SGRISD-PPKVLSRLLLLY---F-NPSTED- 168 (298)
T ss_pred CchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh-cCCCCc-HHHHHHHHHHHH---c-CcccCC-
Confidence 311111111111223455666667766655421112223334444332 233322 244555554332 2 443221
Q ss_pred hHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhcc
Q 002048 622 NHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQND 662 (975)
Q Consensus 622 ~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~ 662 (975)
++.+-.|++......|..+++.-..+.+.++|.+..+....
T Consensus 169 ~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 169 NQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 24777888888888877778788889999999999987654
No 49
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.77 E-value=1.6 Score=50.42 Aligned_cols=155 Identities=17% Similarity=0.137 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCC---hHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCC
Q 002048 7 TLQHLSQCFLHTLSPSPEPRRAAERSLAEMADRPN---YGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNS 83 (975)
Q Consensus 7 ~~~~l~~~L~~tls~d~~~r~~AE~~L~~~~~~p~---f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~ 83 (975)
+...+..+|...-+..+..|+.|=.+|..-..+=| .+.-++-++.+.+.+.+-|.+-.=.+-+.+-+--.-.. .|.
T Consensus 361 kEr~i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlvr-pYV 439 (1172)
T KOG0213|consen 361 KERKIMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVR-PYV 439 (1172)
T ss_pred cHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccch-hce
Confidence 34556677777778888899999888886554433 23344445556667777776544222222211000000 000
Q ss_pred C-----CCcCCCCHHHHHHHH-----HHH-----HHHHhcC--------CHHHHHHHHHHHHHHhcccCCCCCCchHHHH
Q 002048 84 G-----PTLAPILDAEKDQIK-----SLI-----VGLMLTS--------TPRIQSQLSEALVVVGNHDFPKHWPTLLPEL 140 (975)
Q Consensus 84 ~-----~~~~~i~~e~K~~Ir-----~~l-----l~~l~~~--------~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l 140 (975)
- ..|..|.++-+..+- ++| +..+++. ++-||+..+.+.+.+|.+- .-|.|+|.|
T Consensus 440 hkILvViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasal---gip~llpfL 516 (1172)
T KOG0213|consen 440 HKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASAL---GIPALLPFL 516 (1172)
T ss_pred eeeEEEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHh---CcHHHHHHH
Confidence 0 012235555444322 222 2223331 2459999999999999874 578899999
Q ss_pred HHHhcccccCCChhHHhHHHHHHHHHHH
Q 002048 141 IANLKDAAQSNNYVSINGILGTANSIFK 168 (975)
Q Consensus 141 ~~~l~~~~~~~d~~~~~~~L~~l~~i~k 168 (975)
-....|.. +-...|.+.++..+|+.
T Consensus 517 kavc~Skk---SwqaRhTgIkivqqIai 541 (1172)
T KOG0213|consen 517 KAVCGSKK---SWQARHTGIKIVQQIAI 541 (1172)
T ss_pred HHHhcccc---chhhhchhhHHHHHHHH
Confidence 99988774 55678899999999886
No 50
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=2.3 Score=52.16 Aligned_cols=110 Identities=12% Similarity=0.218 Sum_probs=72.6
Q ss_pred cCchHHHHHHHHHhhcCCCCc--chHHHHHHHHHHhcchhhHhhhHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHh
Q 002048 729 EGKLREVLGIFNMLVLSPSTD--EQGFYVLNTIVESLEYGVIAQFVPHIWGVLFTRLQNKRTVKFVKSLLIFMSLFLVKH 806 (975)
Q Consensus 729 ~~~~~~il~i~~~ll~~~~~~--~~a~~ll~~ii~~~~~~~~~~~l~~il~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~ 806 (975)
.+++..++++..-.+.+...+ ..|...+..++..+|...+.++++.++..++.-++..+ ..+....-..+=.++-.+
T Consensus 822 ~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k-~~~r~Kvr~LlekLirkf 900 (1176)
T KOG1248|consen 822 DETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHK-IKVRKKVRLLLEKLIRKF 900 (1176)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHh
Confidence 356788888888888766544 45789999999999988889999999999988555433 333333333444454556
Q ss_pred ChHHHHHHHhhhcchhHHHHHHHHhhcCcccccchhhHHHHH
Q 002048 807 GPENLVNTMNAVQSGIILVILEQIWIPNLKLITGAIEWKLTA 848 (975)
Q Consensus 807 ~~~~~l~~L~~~~~~~~~~~~~~~w~~~~~~~~~~~~~K~~~ 848 (975)
+++.+=.++. -....|++++.+.++...||...
T Consensus 901 g~~eLe~~~p---------ee~~klL~nIRK~r~R~~rK~a~ 933 (1176)
T KOG1248|consen 901 GAEELESFLP---------EEDMKLLTNIRKRRRRKKRKKAM 933 (1176)
T ss_pred CHHHHHhhCH---------HHHHHHHHHHHHHHHHhhhhhhh
Confidence 6664333332 12235777777777776666544
No 51
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.60 E-value=0.76 Score=52.89 Aligned_cols=290 Identities=14% Similarity=0.201 Sum_probs=149.4
Q ss_pred cchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHH
Q 002048 485 FPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTS 564 (975)
Q Consensus 485 ~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~ 564 (975)
.+-.|.=|..+|.+|-..+| +....++.+++.+..|.+..||..|...|-.+|... ..++..+.+.
T Consensus 35 ~~k~K~Laaq~I~kffk~FP-~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~-------------~~~v~kvaDv 100 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHFP-DLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN-------------PEHVSKVADV 100 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-G-GGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---------------T-HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCh-hhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH-------------HHHHhHHHHH
Confidence 46688888999999888776 678889999999999999999999998888777542 2357778888
Q ss_pred HHHhcCCCCchhhHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHhCC-CCCchhHHHHHHHHHHHHHhhhcCcch
Q 002048 565 LFNAFKFPESEENQYIMKCIMRVLGVAEISNEVAAPCISGLTSILNEVCKNP-KSPIFNHYLFESVAVLVRRACQRDPSL 643 (975)
Q Consensus 565 L~~ll~~~~~~~~~~l~~~l~~vi~~~~~i~p~~~~l~~~L~~~l~~~~~~~-~~~~~~~~~~e~l~~li~~~~~~~~~~ 643 (975)
|.++|+.-+..|...+-++++.++..+.. ..|..++..+..++ ++...+..++..|..=+..+ .++.
T Consensus 101 L~QlL~tdd~~E~~~v~~sL~~ll~~d~k---------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l---~~~~ 168 (556)
T PF05918_consen 101 LVQLLQTDDPVELDAVKNSLMSLLKQDPK---------GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPL---KPEL 168 (556)
T ss_dssp HHHHTT---HHHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS----TTT
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhC---cHHH
Confidence 88888765555666777777777552221 12222333332111 22334456666665544444 1222
Q ss_pred H---HHHHHhhHHHHHHHHhcccccchHHHHHHHHHHHHhcCC----CCchhHHHHHHhhcCcc-c---cc--cCCCccc
Q 002048 644 I---SAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRP----PLSSNYMQIFNLLLSPD-S---WK--RSSNVPA 710 (975)
Q Consensus 644 ~---~~l~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~~~~----~~~~~~~~lf~~l~~~~-l---~~--~~~~l~~ 710 (975)
+ ...+..+.-.+..+|+ |+..+=|+++=.++...+. .-.+....|++.+..-. + +. +.+.+..
T Consensus 169 ~~p~~E~e~~i~~~ikkvL~----DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idr 244 (556)
T PF05918_consen 169 LTPQKEMEEFIVDEIKKVLQ----DVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDR 244 (556)
T ss_dssp S---HHHHHHHHHHHHHHCT----T--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHH
T ss_pred hhchHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHH
Confidence 2 4688888888888884 3444445555555555432 13445566666665321 1 11 1123333
Q ss_pred hHHHHHHHHccCccchhccCchHHHHHHHHHhhcCCCCc---chHHHHHHHHHHhcchh---hHhhhHHHHHHHHHHHhh
Q 002048 711 LVRLLQAFLQKVPREIAQEGKLREVLGIFNMLVLSPSTD---EQGFYVLNTIVESLEYG---VIAQFVPHIWGVLFTRLQ 784 (975)
Q Consensus 711 ~~~~L~~~i~~~~~~~~~~~~~~~il~i~~~ll~~~~~~---~~a~~ll~~ii~~~~~~---~~~~~l~~il~~~l~~L~ 784 (975)
+..|+.. +-..|..+.....+++.+.+-+-+.-.+ ..=+++|..+....|.. ...+.++.++..+...+=
T Consensus 245 li~C~~~----Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ymP 320 (556)
T PF05918_consen 245 LISCLRQ----ALPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYMP 320 (556)
T ss_dssp HHHHHHH----HGGG-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS-
T ss_pred HHHHHHH----hhHHhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhCC
Confidence 3333332 2222222223455565444333333332 22345555555544321 234556666666654443
Q ss_pred cCch-h----hHHHHHHHHHHHHHHHhChH
Q 002048 785 NKRT-V----KFVKSLLIFMSLFLVKHGPE 809 (975)
Q Consensus 785 ~~~~-~----~~~~~~i~~~~~~~~~~~~~ 809 (975)
..++ + .++.+++..|..++. ..|.
T Consensus 321 ~~~~~~~l~fs~vEcLL~afh~La~-k~p~ 349 (556)
T PF05918_consen 321 SKKTEPKLQFSYVECLLYAFHQLAR-KSPN 349 (556)
T ss_dssp ---------HHHHHHHHHHHHHHHT-T-TH
T ss_pred CCCCCCcccchHhhHHHHHHHHHhh-hCcc
Confidence 3322 1 456677767776653 3455
No 52
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.55 E-value=0.0033 Score=48.41 Aligned_cols=52 Identities=19% Similarity=0.263 Sum_probs=43.6
Q ss_pred chhHhhHHHHHHHhhccCC---HhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 002048 486 PMLKAGALKFFTMFRIQIP---KIHAFQFFPDLVRFLGAESNVVHSYAASCIEKL 537 (975)
Q Consensus 486 ~~Lr~ra~~~l~~f~~~~~---~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~ 537 (975)
|-+|..|+|.+|+.....+ ..+..++++.++.+|+|++..||..|+.||.++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4589999999998765432 357889999999999999889999999999753
No 53
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=3.4 Score=50.85 Aligned_cols=398 Identities=13% Similarity=0.141 Sum_probs=210.6
Q ss_pred hcccCCCChhhHHH-HhhCH-HHHHhhcCCCCcchhhhHHHHHHHHHHHHHh---h--hhhHHHH----HHHHHHHHHHh
Q 002048 359 VIPNVRLRDEDEEL-FEMNY-VEFIRRDMEGSDVDTRRRIACELLKGIATHY---R--QHVMETV----SVQIQNLLTSF 427 (975)
Q Consensus 359 i~~~l~l~~~d~e~-we~dp-~efv~~~~d~~d~~s~R~~A~~ll~~L~~~~---~--~~~~~~l----~~~i~~~l~~~ 427 (975)
.+|-+|-.+-|++. |.+-- ..-.. + ...-..|..-++-|+.|.+.. . ......+ -+++...++-|
T Consensus 501 LLP~FC~~P~Dl~~sF~~la~~l~~a--l--~~~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~y 576 (1176)
T KOG1248|consen 501 LLPGFCNYPVDLAESFTDLAPILGAA--L--LKRPELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVY 576 (1176)
T ss_pred hChhhhCCCccHHHHHHHHHHHHHHH--H--hcchHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHh
Confidence 36888888888764 43321 11000 0 011246777777788887664 1 1112222 23344444555
Q ss_pred ccCCCCC---chhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCC
Q 002048 428 AANPVAN---WKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIP 504 (975)
Q Consensus 428 ~~~~~~~---w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~ 504 (975)
.+.+..+ -..+...|..+.. ..+.... -|+..-|...+--...+.+....++.+.+-+..+.......+
T Consensus 577 tq~~~~~~~~l~~~~~~L~~i~~--~~~~~t~------~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~ 648 (1176)
T KOG1248|consen 577 TQTVAAGRKILASRSTVLEIIRV--DYFTVTP------TDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQT 648 (1176)
T ss_pred cCCCccccccHHHHHHHHHHHHH--HHhhccc------HHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhcccc
Confidence 4443221 2233333333321 1221100 122222222221111221112356777777766666666556
Q ss_pred HhHHHhHHHHHHHhhcC-CCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHH
Q 002048 505 KIHAFQFFPDLVRFLGA-ESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKC 583 (975)
Q Consensus 505 ~~~~~~~~~~l~~~L~~-~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~ 583 (975)
......++ .+.+...+ .+.-||..|-.-|..++.... .......++..|.+.|+.-++.........-++|
T Consensus 649 e~~vs~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s-------~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~ 720 (1176)
T KOG1248|consen 649 ESQVSKLF-TVDPEFENSSSTKVQKKAYRLLEELSSSPS-------GEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKC 720 (1176)
T ss_pred chhHHHHH-HhhHHhhccccHHHHHHHHHHHHHHhcCCc-------hhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 56677777 44444443 478899999888888877521 1234456677788888877776654433344578
Q ss_pred HHHHHh-hccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHH---HHhh-hcCcchHHHHHHhhHHHHHHH
Q 002048 584 IMRVLG-VAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLV---RRAC-QRDPSLISAFEASILPSLQII 658 (975)
Q Consensus 584 l~~vi~-~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li---~~~~-~~~~~~~~~l~~~l~P~i~~i 658 (975)
+.+++. ++.+...+ +...+..++-.. ++.|..-++..|+||-.+. .++- +++| .....+-+++.|...
T Consensus 721 L~~L~~~~~~e~~~~---i~k~I~EvIL~~--Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isag 793 (1176)
T KOG1248|consen 721 LKRLLKLLSAEHCDL---IPKLIPEVILSL--KEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAG 793 (1176)
T ss_pred HHHHHHhccHHHHHH---HHHHHHHHHHhc--ccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhh
Confidence 888887 66332212 222222222111 3333333345555554443 2210 1223 233444556666665
Q ss_pred HhcccccchHH-HHHHHHHHHHhcCCCCchhHH-HHHHhhcCccccccCCCccchHHHHHHHHccCccchhccCchHHHH
Q 002048 659 LQNDVTEFLPY-AFQLLAQLIELNRPPLSSNYM-QIFNLLLSPDSWKRSSNVPALVRLLQAFLQKVPREIAQEGKLREVL 736 (975)
Q Consensus 659 l~~~~~~~~~~-~l~ll~~ll~~~~~~~~~~~~-~lf~~l~~~~l~~~~~~l~~~~~~L~~~i~~~~~~~~~~~~~~~il 736 (975)
+..+..-.... .+.+-..+.+... .++..+. .++..+..-.--.+++...+++..+..++...|+..++. +.+.++
T Consensus 794 l~gd~~~~~as~Ivai~~il~e~~~-~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~-~~~~LL 871 (1176)
T KOG1248|consen 794 LVGDSTRVVASDIVAITHILQEFKN-ILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSP-HLEELL 871 (1176)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhh-hHHHHH
Confidence 55554434433 3344333333333 3554443 555444331112345688899999999999999999875 788888
Q ss_pred HHHHHhhcCCCCc--chHHHHHHHHHHhcchhhHhhhHHHHHHHHHHHhhc
Q 002048 737 GIFNMLVLSPSTD--EQGFYVLNTIVESLEYGVIAQFVPHIWGVLFTRLQN 785 (975)
Q Consensus 737 ~i~~~ll~~~~~~--~~a~~ll~~ii~~~~~~~~~~~l~~il~~~l~~L~~ 785 (975)
.-+-++....... ..+-.|++-+++.++.+.+..++|.-..-+++++..
T Consensus 872 ~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~klL~nIRK 922 (1176)
T KOG1248|consen 872 PSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKLLTNIRK 922 (1176)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHHHHHHHH
Confidence 6655555432221 334578899999998888889999777777777654
No 54
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.47 E-value=0.89 Score=53.10 Aligned_cols=250 Identities=14% Similarity=0.137 Sum_probs=134.1
Q ss_pred HHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhccc
Q 002048 397 ACELLKGIATH-YRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVP 475 (975)
Q Consensus 397 A~~ll~~L~~~-~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p 475 (975)
+.++|+.+... .++...+.+.+++...|. +++-..|.-++..++.++..- ++..+.-...++ ...|+.
T Consensus 58 ~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~------h~~~~Vr~l~l~~l~~~~~~~-~~~~~~~~~~~l----~~~i~~ 126 (503)
T PF10508_consen 58 ICDILKRLLSALSPDSLLPQYQPFLQRGLT------HPSPKVRRLALKQLGRIARHS-EGAAQLLVDNEL----LPLIIQ 126 (503)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHhcCC-HHHHHHhcCccH----HHHHHH
Confidence 34566666554 355556667777777775 456688999999988876432 111110001112 223445
Q ss_pred ccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhH-----HHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccc
Q 002048 476 ELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQF-----FPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYN 550 (975)
Q Consensus 476 ~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~-----~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~ 550 (975)
.+.+ +..-+...|+.++....+.- ..+..+ ...+.+.+..++-.||..+...+..+...
T Consensus 127 ~L~~----~d~~Va~~A~~~L~~l~~~~--~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~---------- 190 (503)
T PF10508_consen 127 CLRD----PDLSVAKAAIKALKKLASHP--EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASH---------- 190 (503)
T ss_pred HHcC----CcHHHHHHHHHHHHHHhCCc--hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhc----------
Confidence 5555 34567888888888887642 233333 66677777765667777666666665543
Q ss_pred cccccchHHH--HHHHHHHhcCCCCchhhHHHHHHHHHHHhhccchhhhHHH--HHHHHHHHHHHHHhCC-CCCchhHHH
Q 002048 551 SADITPYLSV--LMTSLFNAFKFPESEENQYIMKCIMRVLGVAEISNEVAAP--CISGLTSILNEVCKNP-KSPIFNHYL 625 (975)
Q Consensus 551 ~~~l~p~l~~--il~~L~~ll~~~~~~~~~~l~~~l~~vi~~~~~i~p~~~~--l~~~L~~~l~~~~~~~-~~~~~~~~~ 625 (975)
.+....+... +++.++..+++.+-.-...+++.+..+.. .++-..|... +++.|...+.....+| ....+.-+.
T Consensus 191 S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~ 269 (503)
T PF10508_consen 191 SPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGR 269 (503)
T ss_pred CHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhH
Confidence 2233344443 77777777766321122233444444433 2232334332 5677776665554455 221122233
Q ss_pred HHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhcccccchHHHHHHHHHHH
Q 002048 626 FESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDVTEFLPYAFQLLAQLI 678 (975)
Q Consensus 626 ~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll 678 (975)
+...+.+... +|.......+.++..+...++.......+-+++-++.+-
T Consensus 270 ~~f~g~la~~----~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~ig 318 (503)
T PF10508_consen 270 MKFFGNLARV----SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIG 318 (503)
T ss_pred HHHHHHHHhc----ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHh
Confidence 3444444332 334343444445545555555555566777888877664
No 55
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=2.6 Score=47.51 Aligned_cols=301 Identities=15% Similarity=0.153 Sum_probs=145.7
Q ss_pred hHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 002048 506 IHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIM 585 (975)
Q Consensus 506 ~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~ 585 (975)
.++..+++++++.|+|++..||..+-.++..|+..-. ..++.+ -.++.+.-+..-+...+..-....+.-+.
T Consensus 204 ~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~------s~P~s~--d~~~~i~vlv~~l~ss~~~iq~~al~Wi~ 275 (675)
T KOG0212|consen 204 SYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR------SSPSSM--DYDDMINVLVPHLQSSEPEIQLKALTWIQ 275 (675)
T ss_pred hcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh------cCcccc--CcccchhhccccccCCcHHHHHHHHHHHH
Confidence 5688999999999999999999888888888775321 111111 12333334443334433221222344455
Q ss_pred HHHh-hccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhh-hcCcc--hHHHHHHhhHHHHHHHHhc
Q 002048 586 RVLG-VAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRAC-QRDPS--LISAFEASILPSLQIILQN 661 (975)
Q Consensus 586 ~vi~-~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~-~~~~~--~~~~l~~~l~P~i~~il~~ 661 (975)
..+. .+.++.||...++..+.+++ ..++.- .........-+.+...++ +...+ .++ .++.++..-+..
T Consensus 276 efV~i~g~~~l~~~s~il~~iLpc~---s~~e~~-~i~~~a~~~n~~l~~l~s~~~~~~~id~~----~ii~vl~~~l~~ 347 (675)
T KOG0212|consen 276 EFVKIPGRDLLLYLSGILTAILPCL---SDTEEM-SIKEYAQMVNGLLLKLVSSERLKEEIDYG----SIIEVLTKYLSD 347 (675)
T ss_pred HHhcCCCcchhhhhhhhhhhcccCC---CCCccc-cHHHHHHHHHHHHHHHHhhhhhccccchH----HHHHHHHHHhhc
Confidence 5556 78888888877766665543 111110 111111111112222221 11111 112 233333444444
Q ss_pred ccccchHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCccccccCCCccchHHHHHHHHccCccchhccCchHHHHHHHHH
Q 002048 662 DVTEFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKRSSNVPALVRLLQAFLQKVPREIAQEGKLREVLGIFNM 741 (975)
Q Consensus 662 ~~~~~~~~~l~ll~~ll~~~~~~~~~~~~~lf~~l~~~~l~~~~~~l~~~~~~L~~~i~~~~~~~~~~~~~~~il~i~~~ 741 (975)
+..+---.+++-+..+..+.|.++.-.+.++|+.+++...-.++..+-..+.++.+...... .+--..++..++++|..
T Consensus 348 ~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~-~~~~~~fl~sLL~~f~e 426 (675)
T KOG0212|consen 348 DREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN-SPNLRKFLLSLLEMFKE 426 (675)
T ss_pred chHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc-cccHHHHHHHHHHHHhh
Confidence 33333334777777777777765655556888888874222233455555666665544322 21001244555555543
Q ss_pred hhcCCC-CcchHHHHHHHHHHhcchhhHhhhHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHhChHHHH--HHHhhh
Q 002048 742 LVLSPS-TDEQGFYVLNTIVESLEYGVIAQFVPHIWGVLFTRLQNKRTVKFVKSLLIFMSLFLVKHGPENLV--NTMNAV 818 (975)
Q Consensus 742 ll~~~~-~~~~a~~ll~~ii~~~~~~~~~~~l~~il~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~l--~~L~~~ 818 (975)
++. .+.-|--++..+...+.++ .|.+.+..-|......+|...++-.+..+ +..+|+.+- +.|...
T Consensus 427 ---~~~~l~~Rg~lIIRqlC~lL~aE-------~IYr~~a~ILe~e~nl~FAstMV~~Ln~i-LlTStELf~LR~~Lk~l 495 (675)
T KOG0212|consen 427 ---DTKLLEVRGNLIIRQLCLLLNAE-------RIYRSIADILEREENLKFASTMVQALNTI-LLTSTELFQLRNKLKDL 495 (675)
T ss_pred ---hhHHHHhhhhHHHHHHHHHhCHH-------HHHHHHHHHHhccccchHHHHHHHHHHhh-hcccHHHHHHHHHHHhc
Confidence 211 1334544555555444333 23333334444444456666555444333 223455332 334322
Q ss_pred c---chhHHHHHHHHhhcC
Q 002048 819 Q---SGIILVILEQIWIPN 834 (975)
Q Consensus 819 ~---~~~~~~~~~~~w~~~ 834 (975)
. .+.+...+.+.||.+
T Consensus 496 sn~es~~lF~cLy~sWchn 514 (675)
T KOG0212|consen 496 SNEESQNLFCCLYRSWCHN 514 (675)
T ss_pred cChhhhHHHHHHHHHHcCC
Confidence 1 233334566778864
No 56
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.26 E-value=0.14 Score=53.04 Aligned_cols=180 Identities=14% Similarity=0.188 Sum_probs=96.4
Q ss_pred CCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHH---HhcccccCCCCCCCcchhHhhHHHHHHHhhccCC---H
Q 002048 432 VANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFT---SVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIP---K 505 (975)
Q Consensus 432 ~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~---~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~---~ 505 (975)
+.+|..|..++--+..+..+.... . ...++.+.+. ..+...+.+ ...-+-..||.+++.+...+. +
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~-~---~~~~~~~~l~~~~~~i~~~l~d----~Rs~v~~~A~~~l~~l~~~l~~~~~ 89 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPE-D---FPPDFVECLRQLLDAIIKQLSD----LRSKVSKTACQLLSDLARQLGSHFE 89 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B---------HHHHHHHH---HHHHH-S-H----H---HHHHHHHHHHHHHHHHGGGGH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCcc-c---cHHHHHHHHHHhHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHhHhHH
Confidence 578999999998888876543100 0 0112223233 233344444 345677889999988765432 3
Q ss_pred hHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHH-HHHHHHhcCCCCchhhHHHHHHH
Q 002048 506 IHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVL-MTSLFNAFKFPESEENQYIMKCI 584 (975)
Q Consensus 506 ~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~i-l~~L~~ll~~~~~~~~~~l~~~l 584 (975)
.....++|.++..+.++...++..|..||..++.... +.+.+ +..+...++.-........++.+
T Consensus 90 ~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--------------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l 155 (228)
T PF12348_consen 90 PYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS--------------YSPKILLEILSQGLKSKNPQVREECAEWL 155 (228)
T ss_dssp HHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---------------H--HHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--------------cHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 5688899999999999999999999999999887531 22333 33444444333222344666777
Q ss_pred HHHHh-hc---cchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHh
Q 002048 585 MRVLG-VA---EISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRA 636 (975)
Q Consensus 585 ~~vi~-~~---~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~ 636 (975)
..++. .+ ..+.... .+..+.+.+.... +..++..+...-+++..+.+..
T Consensus 156 ~~~l~~~~~~~~~l~~~~--~~~~l~~~l~~~l-~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 156 AIILEKWGSDSSVLQKSA--FLKQLVKALVKLL-SDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp HHHHTT-----GGG--HH--HHHHHHHHHHHHH-TSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccchHhhhcccc--hHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHC
Confidence 77777 66 3332211 1233333333333 3345566666777777666654
No 57
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.01 E-value=4.7 Score=47.51 Aligned_cols=149 Identities=14% Similarity=0.148 Sum_probs=96.1
Q ss_pred CCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhH
Q 002048 432 VANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQF 511 (975)
Q Consensus 432 ~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~ 511 (975)
+++...|.-.|.+...+-+ + .-|+--.+++.+..+|+++ ..++.+-|+-.+|+.. ++|....+
T Consensus 81 s~~f~dKRiGYLaamLlLd---E-------~qdvllLltNslknDL~s~----nq~vVglAL~alg~i~---s~Emardl 143 (866)
T KOG1062|consen 81 SDNFLDKRIGYLAAMLLLD---E-------RQDLLLLLTNSLKNDLNSS----NQYVVGLALCALGNIC---SPEMARDL 143 (866)
T ss_pred CCCchHHHHHHHHHHHHhc---c-------chHHHHHHHHHHHhhccCC----CeeehHHHHHHhhccC---CHHHhHHh
Confidence 4567777766665554421 1 2356667889999999983 5677777777776654 56899999
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHH---HHH
Q 002048 512 FPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIM---RVL 588 (975)
Q Consensus 512 ~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~---~vi 588 (975)
.|-+-+.|+.++.-||-.|+.|.-+++.- .++...-|++..-+.|. +-. -.-++.++. +++
T Consensus 144 apeVe~Ll~~~~~~irKKA~Lca~r~irK---------~P~l~e~f~~~~~~lL~----ek~---hGVL~~~l~l~~e~c 207 (866)
T KOG1062|consen 144 APEVERLLQHRDPYIRKKAALCAVRFIRK---------VPDLVEHFVIAFRKLLC----EKH---HGVLIAGLHLITELC 207 (866)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHc---------CchHHHHhhHHHHHHHh----hcC---CceeeeHHHHHHHHH
Confidence 99999999999999999999999998863 23444444444444443 211 011222222 222
Q ss_pred hhccchhhhHHHHHHHHHHHHHHHH
Q 002048 589 GVAEISNEVAAPCISGLTSILNEVC 613 (975)
Q Consensus 589 ~~~~~i~p~~~~l~~~L~~~l~~~~ 613 (975)
..+.+...|+..++..|+.+++.+.
T Consensus 208 ~~~~~~l~~fr~l~~~lV~iLk~l~ 232 (866)
T KOG1062|consen 208 KISPDALSYFRDLVPSLVKILKQLT 232 (866)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222334466678888888777665
No 58
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=1.2 Score=51.49 Aligned_cols=139 Identities=18% Similarity=0.237 Sum_probs=81.9
Q ss_pred HHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccc
Q 002048 469 FTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSR 548 (975)
Q Consensus 469 l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~ 548 (975)
+..-|+..|.+ .-|++|-||+-++.+---+. |+.+...||-+..-|.|+|+.|+..|...++.+.. ++
T Consensus 145 La~Dv~tLL~s----skpYvRKkAIl~lykvFLkY-PeAlr~~FprL~EkLeDpDp~V~SAAV~VICELAr-Kn------ 212 (877)
T KOG1059|consen 145 LADDVFTLLNS----SKPYVRKKAILLLYKVFLKY-PEALRPCFPRLVEKLEDPDPSVVSAAVSVICELAR-KN------ 212 (877)
T ss_pred HHHHHHHHHhc----CchHHHHHHHHHHHHHHHhh-hHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHh-hC------
Confidence 44445555665 58999999998887632222 47889999999999999999999988887776554 22
Q ss_pred cccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHH
Q 002048 549 YNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG-VAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFE 627 (975)
Q Consensus 549 ~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e 627 (975)
+....|..|. +|++|.... |.. .+.+++. |+ .+.|+-+.+..+|.+-+-+...+- ....-++|
T Consensus 213 --PknyL~LAP~----ffkllttSs---NNW---mLIKiiKLF~-aLtplEPRLgKKLieplt~li~sT---~AmSLlYE 276 (877)
T KOG1059|consen 213 --PQNYLQLAPL----FYKLLVTSS---NNW---VLIKLLKLFA-ALTPLEPRLGKKLIEPITELMEST---VAMSLLYE 276 (877)
T ss_pred --CcccccccHH----HHHHHhccC---CCe---ehHHHHHHHh-hccccCchhhhhhhhHHHHHHHhh---HHHHHHHH
Confidence 2233333333 344544432 221 1223333 32 334555555444443222222110 01246889
Q ss_pred HHHHHHHH
Q 002048 628 SVAVLVRR 635 (975)
Q Consensus 628 ~l~~li~~ 635 (975)
|+.++|..
T Consensus 277 CvNTVVa~ 284 (877)
T KOG1059|consen 277 CVNTVVAV 284 (877)
T ss_pred HHHHheee
Confidence 99988865
No 59
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=95.71 E-value=0.13 Score=50.09 Aligned_cols=130 Identities=19% Similarity=0.166 Sum_probs=94.4
Q ss_pred HhcccccCCCCCCCcchhHhhHHHHHHHhhccCCH----hHHHhHHHHHHHhhcCC-CchHHHHHHHHHHHHHccccCCC
Q 002048 471 SVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPK----IHAFQFFPDLVRFLGAE-SNVVHSYAASCIEKLLQVKDEGG 545 (975)
Q Consensus 471 ~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~----~~~~~~~~~l~~~L~~~-~~~V~~~Aa~aL~~~~~~~~~~~ 545 (975)
+.+...+++ ..+.-|-.++.+++...+..+. +....-+..+++.|+.+ ...+...|+.++..++..- .+
T Consensus 28 ~ri~~LL~s----~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~--~~ 101 (165)
T PF08167_consen 28 TRINSLLQS----KSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI--RG 101 (165)
T ss_pred HHHHHHhCC----CChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh--cC
Confidence 345556666 3455566666666665544322 44567788888888876 5777888999999988653 34
Q ss_pred ccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh-hccchhhhHHHHHHHHHHH
Q 002048 546 KSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG-VAEISNEVAAPCISGLTSI 608 (975)
Q Consensus 546 ~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~~ 608 (975)
++.+.++...|.++.+++.++++++.. ...+.+++++..++. +..-+.||...+-..+.+.
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~~--~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQDS--SCPETALDALATLLPHHPTTFRPFANKIESALLSL 163 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence 567788889999999999999999851 144567888888888 8889999988776665543
No 60
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.64 E-value=0.48 Score=53.56 Aligned_cols=222 Identities=14% Similarity=0.122 Sum_probs=119.5
Q ss_pred chhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCC--Hh--HHHh
Q 002048 435 WKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIP--KI--HAFQ 510 (975)
Q Consensus 435 w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~--~~--~~~~ 510 (975)
...+.-|-+++..||.+..+-...+.+ .+-.+.| +..+.+ ++.-++..|.|.+|.++..-+ .+ .-..
T Consensus 124 ~~lq~eAAWaLTnIAsgtse~T~~vv~-agavp~f----i~Ll~s----~~~~v~eQavWALgNIagds~~~Rd~vl~~g 194 (514)
T KOG0166|consen 124 PTLQFEAAWALTNIASGTSEQTKVVVD-AGAVPIF----IQLLSS----PSADVREQAVWALGNIAGDSPDCRDYVLSCG 194 (514)
T ss_pred hhHHHHHHHHHHHHhcCchhhcccccc-CCchHHH----HHHhcC----CcHHHHHHHHHHHhccccCChHHHHHHHhhc
Confidence 344555557888887654111000111 1111222 223444 688999999999998865432 12 2344
Q ss_pred HHHHHHHhhcCCC-chHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh
Q 002048 511 FFPDLVRFLGAES-NVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG 589 (975)
Q Consensus 511 ~~~~l~~~L~~~~-~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~ 589 (975)
+++.++..+..++ ....-.|+++|..+|..+++ ..--..+.+++..|+.++...+.........++.-+..
T Consensus 195 ~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P--------~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsd 266 (514)
T KOG0166|consen 195 ALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNP--------SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTD 266 (514)
T ss_pred chHHHHHHhccccchHHHHHHHHHHHHHHcCCCC--------CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 6778888888764 35666799999999998742 11112356677777777777653333333333333322
Q ss_pred -hccchhhhH--HHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhccccc-
Q 002048 590 -VAEISNEVA--APCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDVTE- 665 (975)
Q Consensus 590 -~~~~i~p~~--~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~~~~- 665 (975)
-.+.+. .. ..++..|+.++. .++. ......+.+++.++.. ++-....-+-..++|.+..++.+.-.+
T Consensus 267 g~ne~iq-~vi~~gvv~~LV~lL~----~~~~-~v~~PaLRaiGNIvtG---~d~QTq~vi~~~~L~~l~~ll~~s~~~~ 337 (514)
T KOG0166|consen 267 GSNEKIQ-MVIDAGVVPRLVDLLG----HSSP-KVVTPALRAIGNIVTG---SDEQTQVVINSGALPVLSNLLSSSPKES 337 (514)
T ss_pred CChHHHH-HHHHccchHHHHHHHc----CCCc-ccccHHHhhccceeec---cHHHHHHHHhcChHHHHHHHhccCcchh
Confidence 222221 11 113555555553 2222 2223566666664432 222233344556788888888743333
Q ss_pred chHHHHHHHHHHHHhcC
Q 002048 666 FLPYAFQLLAQLIELNR 682 (975)
Q Consensus 666 ~~~~~l~ll~~ll~~~~ 682 (975)
.-.++.=.++.+....+
T Consensus 338 ikkEAcW~iSNItAG~~ 354 (514)
T KOG0166|consen 338 IKKEACWTISNITAGNQ 354 (514)
T ss_pred HHHHHHHHHHHhhcCCH
Confidence 34567767776665443
No 61
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.62 E-value=6.2 Score=45.94 Aligned_cols=205 Identities=8% Similarity=0.026 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHhhchhhhhhcccCCCchhhHHHH
Q 002048 278 GLRAAVCENISLYMKMNEEEFQGYLNDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNVSTSVHHTLFAGEGVIPQICQN 357 (975)
Q Consensus 278 ~~k~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~~~~l~~l~~~ 357 (975)
-+||.+.-.+.+++-+||+..++-++.+.+.. . .....++..+...+...+++--++.+ +.-+ ++.
T Consensus 159 YvRKkAIl~lykvFLkYPeAlr~~FprL~EkL-------e--DpDp~V~SAAV~VICELArKnPknyL---~LAP-~ff- 224 (877)
T KOG1059|consen 159 YVRKKAILLLYKVFLKYPEALRPCFPRLVEKL-------E--DPDPSVVSAAVSVICELARKNPQNYL---QLAP-LFY- 224 (877)
T ss_pred HHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhc-------c--CCCchHHHHHHHHHHHHHhhCCcccc---cccH-HHH-
Confidence 57888888999999999999888777654332 1 12345778888888877211111221 1111 111
Q ss_pred hhcccCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHhccCCCCC
Q 002048 358 IVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATH---YRQHVMETVSVQIQNLLTSFAANPVAN 434 (975)
Q Consensus 358 li~~~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~~---~~~~~~~~l~~~i~~~l~~~~~~~~~~ 434 (975)
..|.-+. ..|--.|. ..++..|+-. .|+.+.+++.+.+.....-
T Consensus 225 ---kllttSs--------------------NNWmLIKi--iKLF~aLtplEPRLgKKLieplt~li~sT~Am-------- 271 (877)
T KOG1059|consen 225 ---KLLVTSS--------------------NNWVLIKL--LKLFAALTPLEPRLGKKLIEPITELMESTVAM-------- 271 (877)
T ss_pred ---HHHhccC--------------------CCeehHHH--HHHHhhccccCchhhhhhhhHHHHHHHhhHHH--------
Confidence 1122100 01111111 2233333311 2455566666555543221
Q ss_pred chhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHH
Q 002048 435 WKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPD 514 (975)
Q Consensus 435 w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~ 514 (975)
...+-|++.+-+. .+..|.+. ..--.+...+.+--.+.+ +.+=||.-+|.+++.....- +.....--..
T Consensus 272 -SLlYECvNTVVa~--s~s~g~~d---~~asiqLCvqKLr~fied----sDqNLKYlgLlam~KI~ktH-p~~Vqa~kdl 340 (877)
T KOG1059|consen 272 -SLLYECVNTVVAV--SMSSGMSD---HSASIQLCVQKLRIFIED----SDQNLKYLGLLAMSKILKTH-PKAVQAHKDL 340 (877)
T ss_pred -HHHHHHHHHheee--hhccCCCC---cHHHHHHHHHHHhhhhhc----CCccHHHHHHHHHHHHhhhC-HHHHHHhHHH
Confidence 1112222222211 22233321 111223333333333333 34557777777777766532 3566677788
Q ss_pred HHHhhcCCCchHHHHHHHHHHHHHcc
Q 002048 515 LVRFLGAESNVVHSYAASCIEKLLQV 540 (975)
Q Consensus 515 l~~~L~~~~~~V~~~Aa~aL~~~~~~ 540 (975)
++.||.|.|..+|+.|..-+..+++-
T Consensus 341 IlrcL~DkD~SIRlrALdLl~gmVsk 366 (877)
T KOG1059|consen 341 ILRCLDDKDESIRLRALDLLYGMVSK 366 (877)
T ss_pred HHHHhccCCchhHHHHHHHHHHHhhh
Confidence 99999999999999999888887764
No 62
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.60 E-value=4.5 Score=45.97 Aligned_cols=186 Identities=10% Similarity=0.049 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccc
Q 002048 397 ACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPE 476 (975)
Q Consensus 397 A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~ 476 (975)
....+...+++++- +.++.|+...-. +...|+.|..++..+..|+..+ |.+..+..-++..-+ ...
T Consensus 301 t~ra~~vva~algv---~~llpfl~a~c~-----SrkSw~aRhTgiri~qqI~~ll--G~s~l~hl~~l~~ci----~~~ 366 (975)
T COG5181 301 TGRAVGVVADALGV---EELLPFLEALCG-----SRKSWEARHTGIRIAQQICELL--GRSRLSHLGPLLKCI----SKL 366 (975)
T ss_pred HHHHHHHHHHhhCc---HHHHHHHHHHhc-----CccchhhhchhhHHHHHHHHHh--CccHHhhhhhHHHHH----HHH
Confidence 33444556666653 334445544332 2357999999999999998776 443222222233322 233
Q ss_pred cCCCCCCCcchhHhhHHHHHHHhhccC---CHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCcccccccc
Q 002048 477 LQSPDVNAFPMLKAGALKFFTMFRIQI---PKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSAD 553 (975)
Q Consensus 477 l~~~~~~~~~~Lr~ra~~~l~~f~~~~---~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~ 553 (975)
+.+ .+.++|-.+...++...+.. .-+.+..++..+-...+...-.+-..=..|...++... +++.
T Consensus 367 l~D----~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm--------~peY 434 (975)
T COG5181 367 LKD----RSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLM--------SPEY 434 (975)
T ss_pred hhc----cceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccC--------ChHh
Confidence 444 57888888888888766543 23667777777766655432111111222333333332 4566
Q ss_pred ccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh-hccchhhh--HHHHHHHHHHHHH
Q 002048 554 ITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG-VAEISNEV--AAPCISGLTSILN 610 (975)
Q Consensus 554 l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~-~~~~i~p~--~~~l~~~L~~~l~ 610 (975)
..-+-...++.++..++.+++.-... +..+.+++. .+. +.|. ..++...+...+|
T Consensus 435 a~h~tre~m~iv~ref~spdeemkk~-~l~v~~~C~~v~~-~tp~~lr~~v~pefF~~fw 492 (975)
T COG5181 435 ACHDTREHMEIVFREFKSPDEEMKKD-LLVVERICDKVGT-DTPWKLRDQVSPEFFSPFW 492 (975)
T ss_pred hhhhHHHHHHHHHHHhCCchhhcchh-HHHHHHHHhccCC-CCHHHHHHhhcHHhhchHH
Confidence 77778899999999998876533222 223444444 322 2333 3555555554444
No 63
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.60 E-value=0.049 Score=65.66 Aligned_cols=212 Identities=17% Similarity=0.208 Sum_probs=120.3
Q ss_pred cchhHhhHHHHHHHhhccCC-HhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCC--CccccccccccchHHHH
Q 002048 485 FPMLKAGALKFFTMFRIQIP-KIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEG--GKSRYNSADITPYLSVL 561 (975)
Q Consensus 485 ~~~Lr~ra~~~l~~f~~~~~-~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~--~~~~~~~~~l~p~l~~i 561 (975)
.+-.|..|+.++..++..+. +..+..++|.+++++.|+..-||..|..+|..++..-.+- .....-++.+-|.+..+
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l 515 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHL 515 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhh
Confidence 34567788888888887654 5668999999999999999999999999999887643210 00011133344444333
Q ss_pred HHH------------HHH--------------------hcCCCCc---------hhhHHHHHHHHHHHh--hccchhhhH
Q 002048 562 MTS------------LFN--------------------AFKFPES---------EENQYIMKCIMRVLG--VAEISNEVA 598 (975)
Q Consensus 562 l~~------------L~~--------------------ll~~~~~---------~~~~~l~~~l~~vi~--~~~~i~p~~ 598 (975)
... .+. +++..++ .+...+..++.+.+. +.+. .|+.
T Consensus 516 ~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~-~~~V 594 (1431)
T KOG1240|consen 516 LNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDS-PPIV 594 (1431)
T ss_pred hccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCC-chHH
Confidence 322 000 0111111 012234445555444 2221 1332
Q ss_pred H-HHHHHHH---HHHHHHH------------hCCCCCchhHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhcc
Q 002048 599 A-PCISGLT---SILNEVC------------KNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQND 662 (975)
Q Consensus 599 ~-~l~~~L~---~~l~~~~------------~~~~~~~~~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~ 662 (975)
. .+++.+. ..+.+.. -|..|+.++...|+.|.-+.-.++. ...++.++|+++..|...
T Consensus 595 kr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~------rs~seyllPLl~Q~ltD~ 668 (1431)
T KOG1240|consen 595 KRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW------RSVSEYLLPLLQQGLTDG 668 (1431)
T ss_pred HHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee------eeHHHHHHHHHHHhccCc
Confidence 2 1333322 2222211 1334555566677766544333311 346889999999999654
Q ss_pred cccchHHHHHHHHHHHHhcCC---CCchhHHHHHHhhcCccccc
Q 002048 663 VTEFLPYAFQLLAQLIELNRP---PLSSNYMQIFNLLLSPDSWK 703 (975)
Q Consensus 663 ~~~~~~~~l~ll~~ll~~~~~---~~~~~~~~lf~~l~~~~l~~ 703 (975)
.+-.+..+++-++.+++..-- .+-+.....+|.+..|..|=
T Consensus 669 EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WI 712 (1431)
T KOG1240|consen 669 EEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWI 712 (1431)
T ss_pred chhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHH
Confidence 444568899999999987531 13333345667777777774
No 64
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.46 E-value=1.9 Score=50.05 Aligned_cols=154 Identities=16% Similarity=0.140 Sum_probs=87.9
Q ss_pred CHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCC
Q 002048 376 NYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGS 455 (975)
Q Consensus 376 dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g 455 (975)
-|+||||- . .|+=||+-...+.+++++..|.+.|+ +.+--.|.-|+++++.|-....+
T Consensus 110 HPNEyiRG-------~--------TLRFLckLkE~ELlepl~p~Iracle------HrhsYVRrNAilaifsIyk~~~~- 167 (948)
T KOG1058|consen 110 HPNEYIRG-------S--------TLRFLCKLKEPELLEPLMPSIRACLE------HRHSYVRRNAILAIFSIYKNFEH- 167 (948)
T ss_pred CchHhhcc-------h--------hhhhhhhcCcHHHhhhhHHHHHHHHh------CcchhhhhhhheeehhHHhhhhh-
Confidence 69999982 2 23345666667788899999988886 33434444456666666432110
Q ss_pred CccccCcccHHHHHHHhcccccCCCCCCCcch------hHhhHHHHHHHhhccC---------------------CHhHH
Q 002048 456 TSISTDLVDVQSFFTSVIVPELQSPDVNAFPM------LKAGALKFFTMFRIQI---------------------PKIHA 508 (975)
Q Consensus 456 ~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~------Lr~ra~~~l~~f~~~~---------------------~~~~~ 508 (975)
. ..|..+.+..++..+..-.. -...| =+.||..+++.-..++ .|...
T Consensus 168 L-----~pDapeLi~~fL~~e~DpsC-kRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~ 241 (948)
T KOG1058|consen 168 L-----IPDAPELIESFLLTEQDPSC-KRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK 241 (948)
T ss_pred h-----cCChHHHHHHHHHhccCchh-HHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh
Confidence 0 12333444444333321100 00111 1345665555322111 25556
Q ss_pred HhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHH
Q 002048 509 FQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFN 567 (975)
Q Consensus 509 ~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ 567 (975)
...+..+++.|++++..|+..||.+|-++... ++.+++-...+++-+.+
T Consensus 242 ~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~----------p~alk~Aa~~~i~l~~k 290 (948)
T KOG1058|consen 242 ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND----------PTALKAAASTYIDLLVK 290 (948)
T ss_pred hHHHHHHHHHHhcCCchhhhhhcceEEEccCC----------HHHHHHHHHHHHHHHHh
Confidence 77788889999999999999999887765443 45666666666665554
No 65
>PRK09687 putative lyase; Provisional
Probab=95.29 E-value=0.87 Score=48.53 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=31.6
Q ss_pred CcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 002048 484 AFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKL 537 (975)
Q Consensus 484 ~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~ 537 (975)
.++.+|..+.+.+|++.+ ...++.++..|.|++.-||..|+.||..+
T Consensus 140 ~~~~VR~~a~~aLg~~~~-------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-------EAAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred CCHHHHHHHHHHHhccCC-------HHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 356677777777776643 23566777777777777777777777754
No 66
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.15 E-value=1.4 Score=43.60 Aligned_cols=75 Identities=16% Similarity=0.225 Sum_probs=56.7
Q ss_pred cchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHH
Q 002048 485 FPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTS 564 (975)
Q Consensus 485 ~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~ 564 (975)
+|.+|.-++..+|.+.-..+ .......+.+..+|+|+++.||..|..+|..++... ....-+.++..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~-~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d------------~ik~k~~l~~~ 67 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP-NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED------------MIKVKGQLFSR 67 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc-HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC------------ceeehhhhhHH
Confidence 47899999999998766544 567888999999999999999999999999987642 22222445566
Q ss_pred HHHhcCCC
Q 002048 565 LFNAFKFP 572 (975)
Q Consensus 565 L~~ll~~~ 572 (975)
++.++.+.
T Consensus 68 ~l~~l~D~ 75 (178)
T PF12717_consen 68 ILKLLVDE 75 (178)
T ss_pred HHHHHcCC
Confidence 66666554
No 67
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=94.92 E-value=8.5 Score=43.52 Aligned_cols=223 Identities=12% Similarity=0.168 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHH-------HhhH----HHHHHHHHHHHhccCCCCcchHHHHHHHHHHHhhchhhhhhccc
Q 002048 278 GLRAAVCENISLYMKMNEEEF-------QGYL----NDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNVSTSVHHTLFA 346 (975)
Q Consensus 278 ~~k~~~~~~l~~~~~~~~~~f-------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~ 346 (975)
..+-.++++++++..+||... ...+ ..+-...+..+.+.+.....|+++..+-.|+..++ .-+|.+.
T Consensus 318 ~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~S-D~FKiI~- 395 (898)
T COG5240 318 VLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMS-DGFKIIA- 395 (898)
T ss_pred HHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhc-cCceEEe-
Confidence 345578899999999998422 1111 11223345556666766667888888888888772 1122221
Q ss_pred CCCchhhHHHHhhcccCCCChhhHHHHhhCHHHHHhhcC--CCCcchhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 002048 347 GEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDM--EGSDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLL 424 (975)
Q Consensus 347 ~~~~l~~l~~~li~~~l~l~~~d~e~we~dp~efv~~~~--d~~d~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l 424 (975)
-+.+..++ +.||. +..- --.|.-.-+ +| .+--+.++.+.+....+.-|+.- +-.++.+...+
T Consensus 396 -ida~rsLs--l~Fp~-----k~~s-----~l~FL~~~L~~eG--g~eFK~~~Vdaisd~~~~~p~sk-EraLe~LC~fI 459 (898)
T COG5240 396 -IDALRSLS--LLFPS-----KKLS-----YLDFLGSSLLQEG--GLEFKKYMVDAISDAMENDPDSK-ERALEVLCTFI 459 (898)
T ss_pred -HHHHHHHH--hhCcH-----HHHH-----HHHHHHHHHHhcc--cchHHHHHHHHHHHHHhhCchHH-HHHHHHHHHHH
Confidence 12222222 11221 1000 011211111 12 23346677777777776655422 22222233322
Q ss_pred HHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCC
Q 002048 425 TSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIP 504 (975)
Q Consensus 425 ~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~ 504 (975)
. +....+-++..+|.++. +|.....+ ..+..||...+-- ++.++|+.|..++++|.-..+
T Consensus 460 E--------Dcey~~I~vrIL~iLG~---EgP~a~~P-----~~yvrhIyNR~iL----EN~ivRsaAv~aLskf~ln~~ 519 (898)
T COG5240 460 E--------DCEYHQITVRILGILGR---EGPRAKTP-----GKYVRHIYNRLIL----ENNIVRSAAVQALSKFALNIS 519 (898)
T ss_pred h--------hcchhHHHHHHHHHhcc---cCCCCCCc-----chHHHHHHHHHHH----hhhHHHHHHHHHHHHhccCcc
Confidence 2 33455667777777654 34332122 2344555555443 468999999999999975432
Q ss_pred -HhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 002048 505 -KIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLL 538 (975)
Q Consensus 505 -~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~ 538 (975)
+-.-..+..++-+|++|.|-.||-.|+.+++.+-
T Consensus 520 d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 520 DVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred ccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 3334556667778999999999999999998743
No 68
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=94.81 E-value=9.1 Score=43.31 Aligned_cols=344 Identities=13% Similarity=0.124 Sum_probs=190.9
Q ss_pred cccCCCChhhHHHHhhCHHHHHhhc-----CCCCcchhhhHH------HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhc
Q 002048 360 IPNVRLRDEDEELFEMNYVEFIRRD-----MEGSDVDTRRRI------ACELLKGIATHYRQHVMETVSVQIQNLLTSFA 428 (975)
Q Consensus 360 ~~~l~l~~~d~e~we~dp~efv~~~-----~d~~d~~s~R~~------A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~ 428 (975)
...++.+......|-.+-.|-|-+- ..+...|.|... |..||..+-++ +.+ .+.-+.+.+..
T Consensus 162 YhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~--dkm---a~lklv~hf~~-- 234 (898)
T COG5240 162 YHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRT--DKM---AQLKLVEHFRG-- 234 (898)
T ss_pred hhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcc--cHH---HHHHHHHHhhc--
Confidence 4667888889999998877766531 112233443333 33344333221 211 22222233332
Q ss_pred cCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhc-cCCHhH
Q 002048 429 ANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRI-QIPKIH 507 (975)
Q Consensus 429 ~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~-~~~~~~ 507 (975)
+..-+..-|.+.++..+.+.+.+.-. -..++.+|+.. .+.+ ....+.--+.+.+..|+. .+.++.
T Consensus 235 ---n~smknq~a~V~lvr~~~~ll~~n~q---~~~q~rpfL~~----wls~----k~emV~lE~Ar~v~~~~~~nv~~~~ 300 (898)
T COG5240 235 ---NASMKNQLAGVLLVRATVELLKENSQ---ALLQLRPFLNS----WLSD----KFEMVFLEAARAVCALSEENVGSQF 300 (898)
T ss_pred ---ccccccchhheehHHHHHHHHHhChH---HHHHHHHHHHH----HhcC----cchhhhHHHHHHHHHHHHhccCHHH
Confidence 11235555666777776665533210 01233333332 2333 245566667777777765 357788
Q ss_pred HHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHH---------HHHHhcCCCCchhhH
Q 002048 508 AFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMT---------SLFNAFKFPESEENQ 578 (975)
Q Consensus 508 ~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~---------~L~~ll~~~~~~~~~ 578 (975)
+.+.+..+-..|.++..+.|-.|.+.|.++... .++. ...-.|.++.++. .+-.+++...+..-+
T Consensus 301 ~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~-~P~k-----v~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~id 374 (898)
T COG5240 301 VDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMK-YPQK-----VSVCNKEVESLISDENRTISTYAITTLLKTGTEETID 374 (898)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhh-CCce-----eeecChhHHHHhhcccccchHHHHHHHHHcCchhhHH
Confidence 999999999999999999999999999986543 2110 0011122222221 223344454444455
Q ss_pred HHHHHHHHHHh-hccchhhhHHHHHHHHHH-----------HHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCcchHHH
Q 002048 579 YIMKCIMRVLG-VAEISNEVAAPCISGLTS-----------ILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISA 646 (975)
Q Consensus 579 ~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~-----------~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~~~~~~ 646 (975)
.++..|-..+. +++++.-.+.+.+..|+. .+.....+.+.-.|+-++.++|+..++.. |+.-..
T Consensus 375 rLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~----p~skEr 450 (898)
T COG5240 375 RLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMEND----PDSKER 450 (898)
T ss_pred HHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhC----chHHHH
Confidence 77777777777 777765444443433332 22233345556667778888888776663 665555
Q ss_pred HHHhhHHHHHHHHhcccccchHHHHHHHHHHHHhcCC-CCchhHH-HHHHhhcCccccccCCCccchHHHHHHHHccCcc
Q 002048 647 FEASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRP-PLSSNYM-QIFNLLLSPDSWKRSSNVPALVRLLQAFLQKVPR 724 (975)
Q Consensus 647 l~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~~~~-~~~~~~~-~lf~~l~~~~l~~~~~~l~~~~~~L~~~i~~~~~ 724 (975)
..+.+.-.|..+ +|-.-+..||+.+=+-.|. +-|..|. .++..++ .++.-.-.+++.+|.-|-....+
T Consensus 451 aLe~LC~fIEDc------ey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~i----LEN~ivRsaAv~aLskf~ln~~d 520 (898)
T COG5240 451 ALEVLCTFIEDC------EYHQITVRILGILGREGPRAKTPGKYVRHIYNRLI----LENNIVRSAAVQALSKFALNISD 520 (898)
T ss_pred HHHHHHHHHhhc------chhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHH----HhhhHHHHHHHHHHHHhccCccc
Confidence 555555444332 4555577888777665553 2233333 4444443 33332335567778777766666
Q ss_pred chhccCchHHHHHHHHHhhcCCCC
Q 002048 725 EIAQEGKLREVLGIFNMLVLSPST 748 (975)
Q Consensus 725 ~~~~~~~~~~il~i~~~ll~~~~~ 748 (975)
.+. -+.+-.++.+|+++...
T Consensus 521 ~~~----~~sv~~~lkRclnD~Dd 540 (898)
T COG5240 521 VVS----PQSVENALKRCLNDQDD 540 (898)
T ss_pred ccc----HHHHHHHHHHHhhcccH
Confidence 655 36677888999986654
No 69
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.77 E-value=9.7 Score=43.41 Aligned_cols=212 Identities=16% Similarity=0.182 Sum_probs=126.9
Q ss_pred cHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCC-HhHHHhHHHHHHHhh-cCCCchHHHHHH----HHHHHH
Q 002048 464 DVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIP-KIHAFQFFPDLVRFL-GAESNVVHSYAA----SCIEKL 537 (975)
Q Consensus 464 ~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~-~~~~~~~~~~l~~~L-~~~~~~V~~~Aa----~aL~~~ 537 (975)
+..+++... +....+. ..+..|..++.+++-..++++ .+.+..++..+...+ ...+...+..+. +..+.+
T Consensus 186 ~~~~ll~~l-~~~~~~~---~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaL 261 (415)
T PF12460_consen 186 DLEELLQSL-LNLALSS---EDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKAL 261 (415)
T ss_pred CHHHHHHHH-HHHHHcC---CChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHH
Confidence 455544433 3333332 358999999999999988764 456778888887777 222222222222 222333
Q ss_pred HccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh-hc--------cchhhhHH-HHHHHHHH
Q 002048 538 LQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG-VA--------EISNEVAA-PCISGLTS 607 (975)
Q Consensus 538 ~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~-~~--------~~i~p~~~-~l~~~L~~ 607 (975)
+- + -.|....+++.|+.++...+ -...+.+++.-++. .+ ..+++... .+...+.+
T Consensus 262 v~-R------------~~~~~~~~~~~L~~lL~~~~--~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p 326 (415)
T PF12460_consen 262 VM-R------------GHPLATELLDKLLELLSSPE--LGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLP 326 (415)
T ss_pred HH-c------------CCchHHHHHHHHHHHhCChh--hHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHH
Confidence 22 1 13667788888888887732 12233344433333 11 12222221 23344444
Q ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhcccccchHHHHHHHHHHHHhcCCCCch
Q 002048 608 ILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRPPLSS 687 (975)
Q Consensus 608 ~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~~~~~~~~ 687 (975)
.+.+..++.++. .+...+.+++.+++.+ ..+.+..-.+.++|++...|..+..+..-.+++.+..+++..+.-+.+
T Consensus 327 ~L~~~~~~~~~~-~k~~yL~ALs~ll~~v---P~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~ 402 (415)
T PF12460_consen 327 KLLEGFKEADDE-IKSNYLTALSHLLKNV---PKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISE 402 (415)
T ss_pred HHHHHHhhcChh-hHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 333333333322 3456788899999887 345677777889999999998777778888999999999887654556
Q ss_pred hHHHHHHhhcC
Q 002048 688 NYMQIFNLLLS 698 (975)
Q Consensus 688 ~~~~lf~~l~~ 698 (975)
....+.|.+++
T Consensus 403 hl~sLI~~LL~ 413 (415)
T PF12460_consen 403 HLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHHh
Confidence 56677777664
No 70
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.55 E-value=13 Score=43.99 Aligned_cols=98 Identities=16% Similarity=0.203 Sum_probs=67.0
Q ss_pred hcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCcccccc
Q 002048 472 VIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNS 551 (975)
Q Consensus 472 ~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~ 551 (975)
.|+--|++ +.+.+|+||+.+.....+. .....+++-++..|...+.-++...+..+..+.
T Consensus 354 tIleCL~D----pD~SIkrralELs~~lvn~---~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~la------------- 413 (866)
T KOG1062|consen 354 TILECLKD----PDVSIKRRALELSYALVNE---SNVRVMVKELLEFLESSDEDFKADIASKIAELA------------- 413 (866)
T ss_pred HHHHHhcC----CcHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH-------------
Confidence 34555666 3578999999998888765 456677777777777666556655554444333
Q ss_pred ccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh
Q 002048 552 ADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG 589 (975)
Q Consensus 552 ~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~ 589 (975)
+.+.|--..-++.+++.+.......++.+...++++|.
T Consensus 414 EkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa 451 (866)
T KOG1062|consen 414 EKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIA 451 (866)
T ss_pred HhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHh
Confidence 24555556667777777777776677777788888877
No 71
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.49 E-value=0.059 Score=35.63 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=26.3
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHcc
Q 002048 511 FFPDLVRFLGAESNVVHSYAASCIEKLLQV 540 (975)
Q Consensus 511 ~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~ 540 (975)
++|.++++++|++..||..|+.+|..+.+.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999998764
No 72
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.41 E-value=12 Score=42.77 Aligned_cols=193 Identities=15% Similarity=0.192 Sum_probs=114.0
Q ss_pred hhhhHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhh-cCCCccccCcccHHHH
Q 002048 391 DTRRRIACELLKGIATHYRQ-HVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKK-AGSTSISTDLVDVQSF 468 (975)
Q Consensus 391 ~s~R~~A~~ll~~L~~~~~~-~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~-~~g~~~~~~~~~~~~~ 468 (975)
...|.++..++..|+.++++ .....+++.. +... ....+-..+..++.++..++..+ .+|-. ....+
T Consensus 204 ~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~---~~~~--~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~------~~~~~ 272 (415)
T PF12460_consen 204 EFSRLAALQLLASLVNKWPDDDDLDEFLDSL---LQSI--SSSEDSELRPQALEILIWITKALVMRGHP------LATEL 272 (415)
T ss_pred hHHHHHHHHHHHHHHcCCCChhhHHHHHHHH---Hhhh--cccCCcchhHHHHHHHHHHHHHHHHcCCc------hHHHH
Confidence 55688888999999988743 2233333333 3222 11233455666777777776555 33321 11222
Q ss_pred HHHhcccccCCCCCCCcchhHhhHHHHHHHhhc-------cC------CHhHHHhHHHHHHHhhcCCCchHHHHHHHHHH
Q 002048 469 FTSVIVPELQSPDVNAFPMLKAGALKFFTMFRI-------QI------PKIHAFQFFPDLVRFLGAESNVVHSYAASCIE 535 (975)
Q Consensus 469 l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~-------~~------~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~ 535 (975)
.+.++..+.++ ..+..-++++.++-.-.+ +. ....+..++|.+++...+.+...+..--.||.
T Consensus 273 -~~~L~~lL~~~---~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs 348 (415)
T PF12460_consen 273 -LDKLLELLSSP---ELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALS 348 (415)
T ss_pred -HHHHHHHhCCh---hhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHH
Confidence 23334445442 345555666655543211 11 12457778888888888765546666667777
Q ss_pred HHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh-hccchhhhHHHHHHHHH
Q 002048 536 KLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG-VAEISNEVAAPCISGLT 606 (975)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~-~~~~i~p~~~~l~~~L~ 606 (975)
.++.. .+.+.+.|+++.++.-|++.++..+.......++++..++. -.+-+.+|...++..|.
T Consensus 349 ~ll~~--------vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL 412 (415)
T PF12460_consen 349 HLLKN--------VPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLL 412 (415)
T ss_pred HHHhh--------CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 77775 35778899999999999999976654333345566666665 55556666666666554
No 73
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=94.39 E-value=0.086 Score=48.01 Aligned_cols=93 Identities=15% Similarity=0.156 Sum_probs=65.2
Q ss_pred CCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHH----HhcccccCCCCCCCcchhHhhHHHHHHHhhccCCH--h
Q 002048 433 ANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFT----SVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPK--I 506 (975)
Q Consensus 433 ~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~----~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~--~ 506 (975)
.+|..++.++.+++.++...... ...++. ..+++.+.+ +.+-++..|+|+++++....++ +
T Consensus 19 ~~~~~~~~a~~~l~~l~~~~~~~---------~~~~~~~~~i~~l~~~l~~----~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 19 SDENVQREAAWALSNLSAGNNDN---------IQAVVEAGGLPALVQLLKS----EDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHH---------HHHHHHCCChHHHHHHHhC----CCHHHHHHHHHHHHHHccCcHHHHH
Confidence 46899999999999997542111 011111 223333444 4689999999999999865421 2
Q ss_pred -HH-HhHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 002048 507 -HA-FQFFPDLVRFLGAESNVVHSYAASCIEKLL 538 (975)
Q Consensus 507 -~~-~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~ 538 (975)
.. ..+++.++++|++.+..++..|+.+|..++
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 22 347999999999999999999999998765
No 74
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=94.34 E-value=16 Score=44.19 Aligned_cols=132 Identities=12% Similarity=0.070 Sum_probs=91.3
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHH
Q 002048 390 VDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFF 469 (975)
Q Consensus 390 ~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l 469 (975)
.++.|.+|...+..++..||.... ....+...+... ..++|+.|-+.+.++..++..+.. +++
T Consensus 531 v~~Ir~~aa~~l~~l~~~~G~~w~--~~~~i~k~L~~~---~q~~y~~R~t~l~si~~la~v~g~------------ei~ 593 (759)
T KOG0211|consen 531 VYSIREAAARNLPALVETFGSEWA--RLEEIPKLLAMD---LQDNYLVRMTTLFSIHELAEVLGQ------------EIT 593 (759)
T ss_pred HHHHHHHHHHHhHHHHHHhCcchh--HHHhhHHHHHHh---cCcccchhhHHHHHHHHHHHHhcc------------HHH
Confidence 588999999999999999984321 223333444322 123799999999999988876622 333
Q ss_pred HHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhH-HHhHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 002048 470 TSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIH-AFQFFPDLVRFLGAESNVVHSYAASCIEKLL 538 (975)
Q Consensus 470 ~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~-~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~ 538 (975)
..+++|.+..-..++.+-+|-.+++.+..+...+.... -..++|++...-+|++.-||..|..|...+.
T Consensus 594 ~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 594 CEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred HHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence 34444443321112578899999999999998776544 4456666666667889999999988877643
No 75
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=94.26 E-value=3.7 Score=43.94 Aligned_cols=165 Identities=13% Similarity=0.092 Sum_probs=89.1
Q ss_pred HHHHHHhhc-cCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCC
Q 002048 493 LKFFTMFRI-QIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKF 571 (975)
Q Consensus 493 ~~~l~~f~~-~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~ 571 (975)
+|++..-.+ ..-.+++.-++|.++..++|.+..+|..++.+|..++.......-..+...-+.+-+.+.+..++..+..
T Consensus 101 ~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~ 180 (282)
T PF10521_consen 101 SWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPP 180 (282)
T ss_pred HHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCC
Confidence 466662221 1123678899999999999999999999999999999853210000011222233333333333333322
Q ss_pred -CCchhhHHHHH----HHHHHHh--hccchhhhHHHHHHHHHH-HHHHHHhCCC--CCchhHHHHHHHHHHHHHhhhcCc
Q 002048 572 -PESEENQYIMK----CIMRVLG--VAEISNEVAAPCISGLTS-ILNEVCKNPK--SPIFNHYLFESVAVLVRRACQRDP 641 (975)
Q Consensus 572 -~~~~~~~~l~~----~l~~vi~--~~~~i~p~~~~l~~~L~~-~l~~~~~~~~--~~~~~~~~~e~l~~li~~~~~~~~ 641 (975)
+++.+.-.++. |+..++. ..++-.++...+...+.. ++..+.-.++ .+.....+++.+..+++.++
T Consensus 181 ~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lG---- 256 (282)
T PF10521_consen 181 ITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELG---- 256 (282)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhc----
Confidence 22223333433 3333333 123223333334343333 3333322222 35566677788888888762
Q ss_pred chHHHHHHhhHHHHHHHHhc
Q 002048 642 SLISAFEASILPSLQIILQN 661 (975)
Q Consensus 642 ~~~~~l~~~l~P~i~~il~~ 661 (975)
.......+.++|++..++++
T Consensus 257 i~~~~hL~rii~~l~~~l~n 276 (282)
T PF10521_consen 257 ISSVKHLQRIIPVLSQILEN 276 (282)
T ss_pred cHHHHHHHHHHHHHHHHhcC
Confidence 24566677788888877765
No 76
>PRK09687 putative lyase; Provisional
Probab=94.21 E-value=1.7 Score=46.32 Aligned_cols=85 Identities=14% Similarity=0.065 Sum_probs=60.1
Q ss_pred CCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhH
Q 002048 432 VANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQF 511 (975)
Q Consensus 432 ~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~ 511 (975)
+++...|.++..+++.+... .... .+...+++ +.+.+|..|+|.+|++...- .....+
T Consensus 34 d~d~~vR~~A~~aL~~~~~~------------~~~~----~l~~ll~~----~d~~vR~~A~~aLg~lg~~~--~~~~~a 91 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQ------------DVFR----LAIELCSS----KNPIERDIGADILSQLGMAK--RCQDNV 91 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcc------------hHHH----HHHHHHhC----CCHHHHHHHHHHHHhcCCCc--cchHHH
Confidence 56788899999998876321 1111 12333444 57899999999999986521 114567
Q ss_pred HHHHHHh-hcCCCchHHHHHHHHHHHHH
Q 002048 512 FPDLVRF-LGAESNVVHSYAASCIEKLL 538 (975)
Q Consensus 512 ~~~l~~~-L~~~~~~V~~~Aa~aL~~~~ 538 (975)
++.+... ++|++..||-.|+.+|..+.
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~ 119 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRC 119 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhccc
Confidence 7888776 78889999999999999754
No 77
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.15 E-value=1.8 Score=44.68 Aligned_cols=175 Identities=13% Similarity=0.122 Sum_probs=95.9
Q ss_pred cchhhhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHhcc-CCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHH
Q 002048 389 DVDTRRRIACELLKGIATHY-RQHVMETVSVQIQNLLTSFAA-NPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQ 466 (975)
Q Consensus 389 d~~s~R~~A~~ll~~L~~~~-~~~~~~~l~~~i~~~l~~~~~-~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~ 466 (975)
..|+.|..|..-|+.++... +....+.+.+.+.+.+..... -.+.+-..--.|+..++.++..+... ++
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~---------~~ 89 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH---------FE 89 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG---------GH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh---------HH
Confidence 45788999999999998765 233333444444422111100 00112234445667777777766332 34
Q ss_pred HHHH---HhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhH-HHHHHHhhcCCCchHHHHHHHHHHHHHcccc
Q 002048 467 SFFT---SVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQF-FPDLVRFLGAESNVVHSYAASCIEKLLQVKD 542 (975)
Q Consensus 467 ~~l~---~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~-~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~ 542 (975)
+++. ..++.-+.+ ...++|.+|..++..+....+ ....+ .+.+...+++.+..||..++..+..++..+.
T Consensus 90 ~~~~~~l~~Ll~~~~~----~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 90 PYADILLPPLLKKLGD----SKKFIREAANNALDAIIESCS--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHHHHHHHHGGG-------HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHcc----ccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 4433 333333343 468999999999999887655 23344 6777778888999999999999999887642
Q ss_pred CCCccccccccccc--hHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 002048 543 EGGKSRYNSADITP--YLSVLMTSLFNAFKFPESEENQYIMKCI 584 (975)
Q Consensus 543 ~~~~~~~~~~~l~p--~l~~il~~L~~ll~~~~~~~~~~l~~~l 584 (975)
.....+.. .++.+...+.+++.+......+..-+++
T Consensus 164 ------~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~ 201 (228)
T PF12348_consen 164 ------SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECL 201 (228)
T ss_dssp ---------GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHH
T ss_pred ------chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 11234443 3577888888888877544444333333
No 78
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.11 E-value=15 Score=43.49 Aligned_cols=128 Identities=11% Similarity=0.047 Sum_probs=87.2
Q ss_pred CCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhH
Q 002048 432 VANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQF 511 (975)
Q Consensus 432 ~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~ 511 (975)
..|-..|-.||+.+++|-.. -+.+...--|.....+ ..|++|..|+..+-+..+- .++...++
T Consensus 119 DpN~LiRasALRvlSsIRvp------------~IaPI~llAIk~~~~D----~s~yVRk~AA~AIpKLYsL-d~e~k~qL 181 (968)
T KOG1060|consen 119 DPNQLIRASALRVLSSIRVP------------MIAPIMLLAIKKAVTD----PSPYVRKTAAHAIPKLYSL-DPEQKDQL 181 (968)
T ss_pred CCcHHHHHHHHHHHHhcchh------------hHHHHHHHHHHHHhcC----CcHHHHHHHHHhhHHHhcC-ChhhHHHH
Confidence 34668888899988876321 1233333333333444 6899999999999875442 23445577
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh
Q 002048 512 FPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG 589 (975)
Q Consensus 512 ~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~ 589 (975)
...+=.+|.|.+..|--.|+.|.+.+|..+ -+. +..-..+|++++.++++.....+++.+.|-+.
T Consensus 182 ~e~I~~LLaD~splVvgsAv~AF~evCPer---------ldL----IHknyrklC~ll~dvdeWgQvvlI~mL~RYAR 246 (968)
T KOG1060|consen 182 EEVIKKLLADRSPLVVGSAVMAFEEVCPER---------LDL----IHKNYRKLCRLLPDVDEWGQVVLINMLTRYAR 246 (968)
T ss_pred HHHHHHHhcCCCCcchhHHHHHHHHhchhH---------HHH----hhHHHHHHHhhccchhhhhHHHHHHHHHHHHH
Confidence 788888899999888888999988877643 122 33445678888888877666677777777655
No 79
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.06 E-value=0.25 Score=42.91 Aligned_cols=91 Identities=14% Similarity=0.162 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCH---hHHHhHHH
Q 002048 437 DKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPK---IHAFQFFP 513 (975)
Q Consensus 437 ~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~---~~~~~~~~ 513 (975)
.|.|++.++.+++..+.+ ++..++...+.|-|..-+ ++..-+|.-||..+......... .++.++|.
T Consensus 2 ~R~ggli~Laa~ai~l~~---------~~~~~l~~Il~pVL~~~~-D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~ 71 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGK---------DISKYLDEILPPVLKCFD-DQDSRVRYYACEALYNISKVARGEILPYFNEIFD 71 (97)
T ss_pred chhHHHHHHHHHHHHchH---------hHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999988876622 244555444444443211 25788999999999988765432 46899999
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHH
Q 002048 514 DLVRFLGAESNVVHSYAASCIEKLL 538 (975)
Q Consensus 514 ~l~~~L~~~~~~V~~~Aa~aL~~~~ 538 (975)
.+...+.|++..||..| ..|.+++
T Consensus 72 ~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 72 ALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHHcCCchhHHHHH-HHHHHHh
Confidence 99999999999999755 4555554
No 80
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=93.67 E-value=7 Score=48.23 Aligned_cols=131 Identities=10% Similarity=0.155 Sum_probs=89.9
Q ss_pred hhhHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHH
Q 002048 392 TRRRIACELLKGIATHYRQ-HVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFT 470 (975)
Q Consensus 392 s~R~~A~~ll~~L~~~~~~-~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~ 470 (975)
-+|+|=.+=+..||..||+ ..-..++.++...|+ ..+|..|-|-+--|..++... | ...+++++.
T Consensus 593 ~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLN------DkDw~LR~aFfdsI~gvsi~V--G------~rs~seyll 658 (1431)
T KOG1240|consen 593 IVKRALLESIIPLCVFFGKEKSNDVILSHLITFLN------DKDWRLRGAFFDSIVGVSIFV--G------WRSVSEYLL 658 (1431)
T ss_pred HHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhc------CccHHHHHHHHhhccceEEEE--e------eeeHHHHHH
Confidence 3555655558889988875 344567777777775 458999987766555444322 1 112455554
Q ss_pred HhcccccCCCCCCCcchhHhhHHHHHHHhhc--cCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHcc
Q 002048 471 SVIVPELQSPDVNAFPMLKAGALKFFTMFRI--QIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQV 540 (975)
Q Consensus 471 ~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~--~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~ 540 (975)
..+.+.|++ +.+++-.+|+-+++-..+ .+.+....++++.+..+|-.|+.=||-.++.-|......
T Consensus 659 PLl~Q~ltD----~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 659 PLLQQGLTD----GEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred HHHHHhccC----cchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 444555554 578888899988887653 467788999999999999999999998888766665443
No 81
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=93.55 E-value=2 Score=41.79 Aligned_cols=137 Identities=12% Similarity=0.148 Sum_probs=92.1
Q ss_pred CHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCch-hhHHHHH
Q 002048 504 PKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESE-ENQYIMK 582 (975)
Q Consensus 504 ~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~-~~~~l~~ 582 (975)
.+..+......+.+.|++++..-|-.++.-+...++.+ ..+.+..+....+..|+++++..+.. ..+..+.
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~--------~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~ 90 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQC--------SWEILLSHGSQWLRALLSILEKPDPPSVLEAAII 90 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45678888888999999988888888888888877763 24677788889999999999886543 3445566
Q ss_pred HHHHHHh-h-------ccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHH
Q 002048 583 CIMRVLG-V-------AEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPS 654 (975)
Q Consensus 583 ~l~~vi~-~-------~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~ 654 (975)
++.+++. . .+...|..+.+++.+.+++.. +.....+++++.+++.......+....+++..+++.
T Consensus 91 ~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~-------~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 91 TLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD-------SSCPETALDALATLLPHHPTTFRPFANKIESALLSL 163 (165)
T ss_pred HHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence 6666665 2 233456666666666655431 223357888888888874222333455566665554
Q ss_pred H
Q 002048 655 L 655 (975)
Q Consensus 655 i 655 (975)
+
T Consensus 164 l 164 (165)
T PF08167_consen 164 L 164 (165)
T ss_pred h
Confidence 3
No 82
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=93.02 E-value=26 Score=42.22 Aligned_cols=177 Identities=12% Similarity=0.110 Sum_probs=105.0
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHH
Q 002048 391 DTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFT 470 (975)
Q Consensus 391 ~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~ 470 (975)
+.++.|.-..+..+.. |+.+...+...+.... ..|-..|.-+++=+-..+.. ++ +..-...
T Consensus 34 ~~kidAmK~iIa~M~~--G~dmssLf~dViK~~~-------trd~ElKrL~ylYl~~yak~--------~P--~~~lLav 94 (757)
T COG5096 34 YKKIDAMKKIIAQMSL--GEDMSSLFPDVIKNVA-------TRDVELKRLLYLYLERYAKL--------KP--ELALLAV 94 (757)
T ss_pred HHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHhcc--------CH--HHHHHHH
Confidence 3344555555555543 5555554545444433 23445555454433333321 11 2223345
Q ss_pred HhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccc
Q 002048 471 SVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYN 550 (975)
Q Consensus 471 ~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~ 550 (975)
+.+..++++ +++.+|+-|+.+++..+.. +.+..+++.+..|+.|++.-||-+|+.|+..+....
T Consensus 95 Nti~kDl~d----~N~~iR~~AlR~ls~l~~~---el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld--------- 158 (757)
T COG5096 95 NTIQKDLQD----PNEEIRGFALRTLSLLRVK---ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD--------- 158 (757)
T ss_pred HHHHhhccC----CCHHHHHHHHHHHHhcChH---HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC---------
Confidence 677788887 5799999999999988875 789999999999999999999999999999988653
Q ss_pred cccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh-hccchhhhHHHHHHHHHH
Q 002048 551 SADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG-VAEISNEVAAPCISGLTS 607 (975)
Q Consensus 551 ~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~ 607 (975)
++....- .....+-.++.+.+ -.-+..|+..+.. ..+...+|.......+.+
T Consensus 159 ~~l~~~~--g~~~~l~~l~~D~d---P~Vi~nAl~sl~~i~~e~a~~~~~~~~~~i~~ 211 (757)
T COG5096 159 KDLYHEL--GLIDILKELVADSD---PIVIANALASLAEIDPELAHGYSLEVILRIPQ 211 (757)
T ss_pred Hhhhhcc--cHHHHHHHHhhCCC---chHHHHHHHHHHHhchhhhhhHHHHHHHHhhh
Confidence 1222111 02222233333332 1223345555555 444467777665554443
No 83
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.97 E-value=20 Score=42.39 Aligned_cols=117 Identities=20% Similarity=0.166 Sum_probs=65.8
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHH
Q 002048 391 DTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFT 470 (975)
Q Consensus 391 ~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~ 470 (975)
..-|+.|..-|++++++|+..|...=|..+.+.|+. |.-.-|+.=+++-.+.....+|-
T Consensus 37 ~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~-------D~~D~E~ik~~LdTl~il~~~dd-------------- 95 (970)
T KOG0946|consen 37 LEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQR-------DYMDPEIIKYALDTLLILTSHDD-------------- 95 (970)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhh-------ccCCHHHHHHHHHHHHHHHhcCc--------------
Confidence 444777888899999999887765555555555542 12222333333333322222221
Q ss_pred HhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccc
Q 002048 471 SVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVK 541 (975)
Q Consensus 471 ~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~ 541 (975)
.|+..+. ..-.---..|+...|... ...+..++..+..-+..||.+|..-+..++..+
T Consensus 96 ---~~~v~dd----s~qsdd~g~~iae~fik~------qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r 153 (970)
T KOG0946|consen 96 ---SPEVMDD----STQSDDLGLWIAEQFIKN------QDNITLLLQSLEEFDFHVRLYAIQLLSALLSCR 153 (970)
T ss_pred ---chhhccc----chhhhHHHHHHHHHHHcC------chhHHHHHHHHHhhchhhhhHHHHHHHHHHhcC
Confidence 1111110 111112234555555332 345677778888789999999999999888765
No 84
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=92.81 E-value=3.5 Score=44.63 Aligned_cols=170 Identities=16% Similarity=0.210 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCccc-HHH
Q 002048 394 RRIACELLKGIATHYR-----QHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVD-VQS 467 (975)
Q Consensus 394 R~~A~~ll~~L~~~~~-----~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~-~~~ 467 (975)
+..|..++.-++-..| +.++..+.+.+.+.+. +++...+.|-+|+.++|.++..+..+...+....+ ++.
T Consensus 103 ~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~----d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~ 178 (309)
T PF05004_consen 103 QALAARALALLALTLGAGEDSEEIFEELKPVLKRILT----DSSASPKARAACLEALAICTFVGGSDEEETEELMESLES 178 (309)
T ss_pred HHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHh----CCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Confidence 3445566666665533 3344444444444443 33445678889998999887654222221110111 222
Q ss_pred -HHHHhcccccCCC--CCCCcchhHhhHHHHHHHhhccCCH----hHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHcc
Q 002048 468 -FFTSVIVPELQSP--DVNAFPMLKAGALKFFTMFRIQIPK----IHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQV 540 (975)
Q Consensus 468 -~l~~~v~p~l~~~--~~~~~~~Lr~ra~~~l~~f~~~~~~----~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~ 540 (975)
|...++..+-..+ ..++.+-+.+.|+..-+-....+++ ..+...++.+..+|++++.-||+.|+.+|.-+.+.
T Consensus 179 if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 179 IFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 2222221111100 0012356777776444433344432 45677889999999999999999999999987765
Q ss_pred ccCCCccccccccccchHHHHHHHHHHhcCCC
Q 002048 541 KDEGGKSRYNSADITPYLSVLMTSLFNAFKFP 572 (975)
Q Consensus 541 ~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~ 572 (975)
... ...+...+..+.+++.+-.+..+.
T Consensus 259 ~~~-----~~~~~~~~~~~~l~~~l~~La~dS 285 (309)
T PF05004_consen 259 ARD-----HEEDFLYEDMEELLEQLRELATDS 285 (309)
T ss_pred hhc-----ccccccccCHHHHHHHHHHHHHhc
Confidence 421 112223445566666655555443
No 85
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=92.63 E-value=23 Score=40.63 Aligned_cols=155 Identities=17% Similarity=0.096 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCC---hHHHHHHHHHhcCcChHHHHHHHHHHHhhhhc------ccCC
Q 002048 7 TLQHLSQCFLHTLSPSPEPRRAAERSLAEMADRPN---YGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRF------RWAP 77 (975)
Q Consensus 7 ~~~~l~~~L~~tls~d~~~r~~AE~~L~~~~~~p~---f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~------~W~~ 77 (975)
+...+.-+|...-+..+.-|+.+=..|..-..+=| .+.-++-++.+-+.+.+-|.+-.=.+-+.+-+ .+-.
T Consensus 166 ~Er~v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~pyvh 245 (975)
T COG5181 166 DERDVYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYVH 245 (975)
T ss_pred chHhHHHHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhccccccccee
Confidence 44567777777778888899998888876555443 23344444555556666666544333222221 1110
Q ss_pred CCCCCCCCCcCCCCHHHHHH--HHHHHHHH--------Hhc--------CCHHHHHHHHHHHHHHhcccCCCCCCchHHH
Q 002048 78 ASDRNSGPTLAPILDAEKDQ--IKSLIVGL--------MLT--------STPRIQSQLSEALVVVGNHDFPKHWPTLLPE 139 (975)
Q Consensus 78 ~~~~~~~~~~~~i~~e~K~~--Ir~~ll~~--------l~~--------~~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~ 139 (975)
.-=-..| |..|.++-|.. =|+-++++ +++ .++-+|+..+.+.+.+|.+- .-|+|+|.
T Consensus 246 kILvVv~--pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~al---gv~~llpf 320 (975)
T COG5181 246 KILVVVG--PLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADAL---GVEELLPF 320 (975)
T ss_pred eEEEEee--ccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhh---CcHHHHHH
Confidence 0000001 22344444322 12222221 111 12459999999999999874 46789999
Q ss_pred HHHHhcccccCCChhHHhHHHHHHHHHHHh
Q 002048 140 LIANLKDAAQSNNYVSINGILGTANSIFKK 169 (975)
Q Consensus 140 l~~~l~~~~~~~d~~~~~~~L~~l~~i~k~ 169 (975)
|-....|.. +-...|.+.++..+||.-
T Consensus 321 l~a~c~Srk---Sw~aRhTgiri~qqI~~l 347 (975)
T COG5181 321 LEALCGSRK---SWEARHTGIRIAQQICEL 347 (975)
T ss_pred HHHHhcCcc---chhhhchhhHHHHHHHHH
Confidence 988887764 556789999999999874
No 86
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=92.53 E-value=16 Score=38.50 Aligned_cols=239 Identities=15% Similarity=0.194 Sum_probs=118.6
Q ss_pred ccccCCCCCCCcchhHhhHHHHHHHhhcc-----CCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccc
Q 002048 474 VPELQSPDVNAFPMLKAGALKFFTMFRIQ-----IPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSR 548 (975)
Q Consensus 474 ~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~-----~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~ 548 (975)
-+.|.+ ..+..|+||..+++.--.. ++++...-++....+.|.|... -..|..++..++..+.
T Consensus 5 g~~Lts----ed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~--~~~~l~gl~~L~~~~~------ 72 (262)
T PF14500_consen 5 GEYLTS----EDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHAC--VQPALKGLLALVKMKN------ 72 (262)
T ss_pred hhhhCC----CCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhh--HHHHHHHHHHHHhCcC------
Confidence 344555 5789999999999976543 4556677777888888865432 2234666676665532
Q ss_pred cccccccchHHHHHHHHHHhcCCCCch--hhHHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHH
Q 002048 549 YNSADITPYLSVLMTSLFNAFKFPESE--ENQYIMKCIMRVLG-VAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYL 625 (975)
Q Consensus 549 ~~~~~l~p~l~~il~~L~~ll~~~~~~--~~~~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~ 625 (975)
+..+. ...+++.+++-..-.... ....+.+.+..++. ..+.+.......+. .+-+...++.||+--..+
T Consensus 73 ~~~~~----~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~----~~i~~~~gEkDPRnLl~~ 144 (262)
T PF14500_consen 73 FSPES----AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVY----GFIQLIDGEKDPRNLLLS 144 (262)
T ss_pred CChhh----HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHH----HHHHHhccCCCHHHHHHH
Confidence 22333 566667766533221111 12222222222222 33333222222222 222344555666533344
Q ss_pred HHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhcccccchHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCccccccC
Q 002048 626 FESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKRS 705 (975)
Q Consensus 626 ~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~~~~~~~~~~~~lf~~l~~~~l~~~~ 705 (975)
|+.+..+++.. +..++.++.++++..- ||--..|.--+..
T Consensus 145 F~l~~~i~~~~-------------------------~~~~~~e~lFd~~~cY---------------FPI~F~pp~~dp~ 184 (262)
T PF14500_consen 145 FKLLKVILQEF-------------------------DISEFAEDLFDVFSCY---------------FPITFRPPPNDPY 184 (262)
T ss_pred HHHHHHHHHhc-------------------------ccchhHHHHHHHhhhe---------------eeeeeeCCCCCCC
Confidence 44444333332 1235667777776432 2332222100111
Q ss_pred CC-ccchHHHHHHHHccCccchhccCchHHHHH-HHHHhhcCCCC--cchHHHHHHHHHHhcchhhHhhhHHHHHHHH
Q 002048 706 SN-VPALVRLLQAFLQKVPREIAQEGKLREVLG-IFNMLVLSPST--DEQGFYVLNTIVESLEYGVIAQFVPHIWGVL 779 (975)
Q Consensus 706 ~~-l~~~~~~L~~~i~~~~~~~~~~~~~~~il~-i~~~ll~~~~~--~~~a~~ll~~ii~~~~~~~~~~~l~~il~~~ 779 (975)
+. -..+-.-|++.+.-. .. +.+..+. ++.|+ .+... -..+++.+...+.+++...+.+|+..|+.++
T Consensus 185 ~IT~edLk~~L~~cl~s~-~~-----fa~~~~p~LleKL-~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 185 GITREDLKRALRNCLSST-PL-----FAPFAFPLLLEKL-DSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred CCCHHHHHHHHHHHhcCc-Hh-----hHHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 11 123334455444421 22 2333443 33444 33322 2457777888888887677888888888776
No 87
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=91.58 E-value=0.41 Score=43.45 Aligned_cols=57 Identities=16% Similarity=0.036 Sum_probs=47.0
Q ss_pred CcchhHhhHHHHHHHhhccCC---HhHHH-hHHHHHHHhhcCCCchHHHHHHHHHHHHHcc
Q 002048 484 AFPMLKAGALKFFTMFRIQIP---KIHAF-QFFPDLVRFLGAESNVVHSYAASCIEKLLQV 540 (975)
Q Consensus 484 ~~~~Lr~ra~~~l~~f~~~~~---~~~~~-~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~ 540 (975)
.++-+|..+++.++.+....+ ..... .+++.++.+|++++..|+..|+.+|.+++..
T Consensus 19 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 19 SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG 79 (120)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccC
Confidence 357899999999999876532 23333 8899999999999999999999999998765
No 88
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=91.26 E-value=0.81 Score=38.92 Aligned_cols=77 Identities=17% Similarity=0.191 Sum_probs=55.3
Q ss_pred CCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhH
Q 002048 432 VANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQF 511 (975)
Q Consensus 432 ~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~ 511 (975)
+++|..|..++.++|.+.. ....+.+ ...+++ +++.+|..|++.+|++.+ .+.
T Consensus 11 ~~~~~vr~~a~~~L~~~~~------------~~~~~~L----~~~l~d----~~~~vr~~a~~aL~~i~~-------~~~ 63 (88)
T PF13646_consen 11 DPDPQVRAEAARALGELGD------------PEAIPAL----IELLKD----EDPMVRRAAARALGRIGD-------PEA 63 (88)
T ss_dssp SSSHHHHHHHHHHHHCCTH------------HHHHHHH----HHHHTS----SSHHHHHHHHHHHHCCHH-------HHT
T ss_pred CCCHHHHHHHHHHHHHcCC------------HhHHHHH----HHHHcC----CCHHHHHHHHHHHHHhCC-------HHH
Confidence 5689999999999984321 1223333 334454 589999999999998853 457
Q ss_pred HHHHHHhhcCC-CchHHHHHHHHHH
Q 002048 512 FPDLVRFLGAE-SNVVHSYAASCIE 535 (975)
Q Consensus 512 ~~~l~~~L~~~-~~~V~~~Aa~aL~ 535 (975)
++.+...+.++ +..||..|+.||.
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 78888888875 7788999998873
No 89
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=90.50 E-value=2.7 Score=41.50 Aligned_cols=111 Identities=21% Similarity=0.232 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHH
Q 002048 436 KDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDL 515 (975)
Q Consensus 436 ~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l 515 (975)
..|--++.++|-++.+.. --+++| ...+..-|.+ +.|.+|..|+.++++....---.....++..+
T Consensus 3 ~vR~n~i~~l~DL~~r~~---------~~ve~~-~~~l~~~L~D----~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~ 68 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYP---------NLVEPY-LPNLYKCLRD----EDPLVRKTALLVLSHLILEDMIKVKGQLFSRI 68 (178)
T ss_pred HHHHHHHHHHHHHHHhCc---------HHHHhH-HHHHHHHHCC----CCHHHHHHHHHHHHHHHHcCceeehhhhhHHH
Confidence 345556666665554321 013333 3455666776 58999999999999864321112345556777
Q ss_pred HHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHh
Q 002048 516 VRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNA 568 (975)
Q Consensus 516 ~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~l 568 (975)
+.++.|++..||..|...+..+.... .++.+...+++++..|-..
T Consensus 69 l~~l~D~~~~Ir~~A~~~~~e~~~~~--------~~~~i~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 69 LKLLVDENPEIRSLARSFFSELLKKR--------NPNIIYNNFPELISSLNNC 113 (178)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhc--------cchHHHHHHHHHHHHHhCc
Confidence 78889999999999999999877642 2456666777777666544
No 90
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=90.41 E-value=0.77 Score=39.04 Aligned_cols=46 Identities=22% Similarity=0.280 Sum_probs=40.0
Q ss_pred CcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHH
Q 002048 484 AFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEK 536 (975)
Q Consensus 484 ~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~ 536 (975)
+.+.+|..|++++|++.+ .++++.+...++|++..||..|+.+|..
T Consensus 12 ~~~~vr~~a~~~L~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 57 (88)
T PF13646_consen 12 PDPQVRAEAARALGELGD-------PEAIPALIELLKDEDPMVRRAAARALGR 57 (88)
T ss_dssp SSHHHHHHHHHHHHCCTH-------HHHHHHHHHHHTSSSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCC-------HhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 589999999999996643 2678888899999999999999999995
No 91
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=90.30 E-value=3 Score=37.08 Aligned_cols=77 Identities=10% Similarity=0.141 Sum_probs=55.8
Q ss_pred cccchHHHHHHHHHHhcCC----CCchhhHHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHH
Q 002048 553 DITPYLSVLMTSLFNAFKF----PESEENQYIMKCIMRVLG-VAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFE 627 (975)
Q Consensus 553 ~l~p~l~~il~~L~~ll~~----~~~~~~~~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e 627 (975)
.+++++-.+++.+-..+.+ .+..+....++++..++. .++.+.++.++++..|...+ +. +.+....++
T Consensus 4 fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal----~~---~~l~~~al~ 76 (107)
T PF08064_consen 4 FLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSAL----EI---PELREEALS 76 (107)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh----CC---hhhHHHHHH
Confidence 4677888888888888766 222355677888888888 88888777776665544433 33 356678999
Q ss_pred HHHHHHHHh
Q 002048 628 SVAVLVRRA 636 (975)
Q Consensus 628 ~l~~li~~~ 636 (975)
|-..+++.+
T Consensus 77 ~W~~fi~~L 85 (107)
T PF08064_consen 77 CWNCFIKTL 85 (107)
T ss_pred HHHHHHHHC
Confidence 999999998
No 92
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=89.69 E-value=61 Score=40.12 Aligned_cols=70 Identities=11% Similarity=0.151 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHh----cccccCCChhHHhHHHHHHHHHHH
Q 002048 93 AEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANL----KDAAQSNNYVSINGILGTANSIFK 168 (975)
Q Consensus 93 e~K~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l----~~~~~~~d~~~~~~~L~~l~~i~k 168 (975)
+--+.+-+.|++.+.+.+..||-..|--+++|+... | ++|.+++++.. +-. .+....|||+..|.++.+
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rl-p---~~Lad~vi~svid~~~p~---e~~~aWHgacLaLAELA~ 409 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRL-P---PELADQVIGSVIDLFNPA---EDDSAWHGACLALAELAL 409 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccC-c---HHHHHHHHHHHHHhcCcC---CchhHHHHHHHHHHHHHh
Confidence 455677788888877778889999999999999987 3 55666655543 322 156789999999999986
Q ss_pred h
Q 002048 169 K 169 (975)
Q Consensus 169 ~ 169 (975)
+
T Consensus 410 r 410 (1133)
T KOG1943|consen 410 R 410 (1133)
T ss_pred c
Confidence 4
No 93
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=89.62 E-value=4.3 Score=35.97 Aligned_cols=77 Identities=12% Similarity=0.150 Sum_probs=57.4
Q ss_pred cccchHHHHHHHHHHhcCCCC--c--hhhHHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHH
Q 002048 553 DITPYLSVLMTSLFNAFKFPE--S--EENQYIMKCIMRVLG-VAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFE 627 (975)
Q Consensus 553 ~l~p~l~~il~~L~~ll~~~~--~--~~~~~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e 627 (975)
-+++++-.+++.+-..+.+.. + .+....++++..++. ++..+..+.++++..|...+ + .+.+....++
T Consensus 4 fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL----~---~~eL~~~al~ 76 (107)
T smart00802 4 FLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSAL----E---IPELRSLALR 76 (107)
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----C---chhHHHHHHH
Confidence 467888889999988887665 2 245677888888888 88887777666655544433 2 3457789999
Q ss_pred HHHHHHHHh
Q 002048 628 SVAVLVRRA 636 (975)
Q Consensus 628 ~l~~li~~~ 636 (975)
|...+++.+
T Consensus 77 ~W~~~i~~L 85 (107)
T smart00802 77 CWHVLIKTL 85 (107)
T ss_pred HHHHHHHhC
Confidence 999999998
No 94
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=89.14 E-value=18 Score=40.20 Aligned_cols=217 Identities=12% Similarity=0.196 Sum_probs=126.8
Q ss_pred hhhHHHHhhCH---HHHHhhcC---CCCcc-hhhhHHHHHHHHHHHHH-hh--hhhHHHHHHHHHHHHHHhccCCCCCch
Q 002048 367 DEDEELFEMNY---VEFIRRDM---EGSDV-DTRRRIACELLKGIATH-YR--QHVMETVSVQIQNLLTSFAANPVANWK 436 (975)
Q Consensus 367 ~~d~e~we~dp---~efv~~~~---d~~d~-~s~R~~A~~ll~~L~~~-~~--~~~~~~l~~~i~~~l~~~~~~~~~~w~ 436 (975)
.++.+.|.+|+ ..||+..+ ++++- .....|-.++...+|+. |+ ++.+.-++..+-+.+.. +.+-.
T Consensus 271 ~~~~~~~~p~~~~~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d-----~~~~~ 345 (516)
T KOG2956|consen 271 DDSMDQLTPNSVDQSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSD-----SEDEI 345 (516)
T ss_pred CcchhhCCCCCcchhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHcc-----chhhH
Confidence 34445555443 34555433 34333 33444444466666643 22 33344455555666653 24556
Q ss_pred hHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHH
Q 002048 437 DKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLV 516 (975)
Q Consensus 437 ~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~ 516 (975)
.|.-|+..++-+...- .+ ..+|=...-...++..-.+. ....+|..+-.++...+.+.|..-...+-+.++
T Consensus 346 ~k~laLrvL~~ml~~Q---~~---~l~DstE~ai~K~Leaa~ds---~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Il 416 (516)
T KOG2956|consen 346 IKKLALRVLREMLTNQ---PA---RLFDSTEIAICKVLEAAKDS---QDEVMRVAEEDCLTTLASHLPLQCIVNISPLIL 416 (516)
T ss_pred HHHHHHHHHHHHHHhc---hH---hhhchHHHHHHHHHHHHhCC---chhHHHHHHHHHHHHHHhhCchhHHHHHhhHHh
Confidence 7777888887664321 00 12232222222333333332 345666666666666677777555666666665
Q ss_pred HhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh-hc-cch
Q 002048 517 RFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG-VA-EIS 594 (975)
Q Consensus 517 ~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~-~~-~~i 594 (975)
. .|.+.-+.+...+.+++.. ...+.+.+.+++++-.+++.-+..+....+.++-|+..++. +| +++
T Consensus 417 t----~D~~~~~~~iKm~Tkl~e~--------l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~m 484 (516)
T KOG2956|consen 417 T----ADEPRAVAVIKMLTKLFER--------LSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEM 484 (516)
T ss_pred c----CcchHHHHHHHHHHHHHhh--------cCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhh
Confidence 5 3444444455566777663 46788999999999999988888776667777788888888 88 889
Q ss_pred hhhHHHHHHHHHHHH
Q 002048 595 NEVAAPCISGLTSIL 609 (975)
Q Consensus 595 ~p~~~~l~~~L~~~l 609 (975)
.||...+-..-..++
T Consensus 485 ePhL~~Lt~sk~~Ll 499 (516)
T KOG2956|consen 485 EPHLEQLTSSKLNLL 499 (516)
T ss_pred hhHhhhccHHHHHHH
Confidence 999877654434433
No 95
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=88.81 E-value=3.5 Score=35.42 Aligned_cols=70 Identities=11% Similarity=0.105 Sum_probs=49.3
Q ss_pred hHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh
Q 002048 510 QFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG 589 (975)
Q Consensus 510 ~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~ 589 (975)
+.++.++..|+|+.+|||..|-..|++++..++ .-...++.++.-++..+++.+...--..++++..++.
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~----------~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS----------EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC----------cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 356777888999999999999999999998641 2334478888888888888764432233444444433
No 96
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.48 E-value=66 Score=38.93 Aligned_cols=275 Identities=9% Similarity=0.032 Sum_probs=119.2
Q ss_pred hhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCH----hHHHhH
Q 002048 436 KDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPK----IHAFQF 511 (975)
Q Consensus 436 ~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~----~~~~~~ 511 (975)
+.-+.++.-+..++..|.+... ....++..+....+.+ .. ..+.-|.+....+|.-...+.+ .++..+
T Consensus 562 k~s~q~i~tl~tlC~~C~~~L~--py~d~~~a~~~e~l~~-~~-----~~~S~~~klm~sIGyvls~~~pEe~~kyl~~l 633 (982)
T KOG2022|consen 562 KESEQAISTLKTLCETCPESLD--PYADQFSAVCYEVLNK-SN-----AKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKL 633 (982)
T ss_pred hHHHHHHHHHHHHHHhhhhhCc--hHHHHHHHHHHHHhcc-cc-----cCchHHHHHHHHHHHHHHhccHHhHHHHHHHH
Confidence 4444444446666666533221 1123344444444433 11 3567888899999987654433 334444
Q ss_pred HHHHHHhhcC----C--C------chHHHHHHHHHHHHHccccCCCccccccccccc----hHHHHHHHHHHhcCCCCch
Q 002048 512 FPDLVRFLGA----E--S------NVVHSYAASCIEKLLQVKDEGGKSRYNSADITP----YLSVLMTSLFNAFKFPESE 575 (975)
Q Consensus 512 ~~~l~~~L~~----~--~------~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p----~l~~il~~L~~ll~~~~~~ 575 (975)
+..++.-|+. . + ..-++.+..+|-.=+..+.+....+.......| -+..++++++..++.+.+.
T Consensus 634 in~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~ 713 (982)
T KOG2022|consen 634 INPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSM 713 (982)
T ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHH
Confidence 4444443332 1 1 222333334443322222111111111111112 2344455555444333211
Q ss_pred --hhHHHHHHHHHHHh--hccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCcchHHHHHHhh
Q 002048 576 --ENQYIMKCIMRVLG--VAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASI 651 (975)
Q Consensus 576 --~~~~l~~~l~~vi~--~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~~~~~~l~~~l 651 (975)
+...++++.+.++. ......+|...+++.++..+.+...+|. ...++...+++..- ...+.+...+.+-+
T Consensus 714 ~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~~-----a~tl~l~~~~l~~~-~~~~~~~~lv~~~~ 787 (982)
T KOG2022|consen 714 WLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSCL-----AVTLSLIAACLLAK-STVEQCKPLVGQDM 787 (982)
T ss_pred HhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccchH-----HHHHHHHHHHHHhh-hccccccccHHHHH
Confidence 22345555555554 2222223323344555554444332221 12233223332221 12233333333333
Q ss_pred HHHHHHH---Hhc----ccccchHHHHHHHHHHHHhcCCCCc----hhHHHHHH-hhcCccccccCCCccchHHHHHHHH
Q 002048 652 LPSLQII---LQN----DVTEFLPYAFQLLAQLIELNRPPLS----SNYMQIFN-LLLSPDSWKRSSNVPALVRLLQAFL 719 (975)
Q Consensus 652 ~P~i~~i---l~~----~~~~~~~~~l~ll~~ll~~~~~~~~----~~~~~lf~-~l~~~~l~~~~~~l~~~~~~L~~~i 719 (975)
.-.++.. +++ +..|.+...+.+++..++..|. +. +.+.+++- ..+...-.-....+.+....+..++
T Consensus 788 ~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~-~~~~~~~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~ 866 (982)
T KOG2022|consen 788 ANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPK-FLEPSMLAFTSLILICAFILLNSPEPTTIRAASQFLTALA 866 (982)
T ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcC-ccccchHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 3333332 222 2235666677788888888875 32 33333322 3332110112336677788888888
Q ss_pred ccCccc
Q 002048 720 QKVPRE 725 (975)
Q Consensus 720 ~~~~~~ 725 (975)
.+..++
T Consensus 867 ~~~~s~ 872 (982)
T KOG2022|consen 867 TYATSH 872 (982)
T ss_pred hhcccc
Confidence 877653
No 97
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.46 E-value=8.6 Score=45.34 Aligned_cols=151 Identities=13% Similarity=0.129 Sum_probs=88.3
Q ss_pred CCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccC-CHhHHHh
Q 002048 432 VANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQI-PKIHAFQ 510 (975)
Q Consensus 432 ~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~-~~~~~~~ 510 (975)
.++|..|--|+...|++.. ..+...+.+-+.-.+.+ .+|++|..|..++..+...- .-..-..
T Consensus 97 d~np~iR~lAlrtm~~l~v------------~~i~ey~~~Pl~~~l~d----~~~yvRktaa~~vakl~~~~~~~~~~~g 160 (734)
T KOG1061|consen 97 DPNPLIRALALRTMGCLRV------------DKITEYLCDPLLKCLKD----DDPYVRKTAAVCVAKLFDIDPDLVEDSG 160 (734)
T ss_pred CCCHHHHHHHhhceeeEee------------hHHHHHHHHHHHHhccC----CChhHHHHHHHHHHHhhcCChhhccccc
Confidence 4689888888888776631 12334444444444554 68999999998888875431 1123344
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhh
Q 002048 511 FFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLGV 590 (975)
Q Consensus 511 ~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~~ 590 (975)
++..+-..+.|+++.|-.-|..||..+.+... .....-...+++..++..+++..+-..-.+++++.+-..
T Consensus 161 l~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~--------~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p- 231 (734)
T KOG1061|consen 161 LVDALKDLLSDSNPMVVANALAALSEIHESHP--------SVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVP- 231 (734)
T ss_pred hhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC--------CCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCC-
Confidence 56666667778887787778888888776531 122333456667777777766544333345554433211
Q ss_pred ccchhhhHHHHHHHHHHHH
Q 002048 591 AEISNEVAAPCISGLTSIL 609 (975)
Q Consensus 591 ~~~i~p~~~~l~~~L~~~l 609 (975)
+++ . -+.++++.+.+.+
T Consensus 232 ~d~-~-ea~~i~~r~~p~L 248 (734)
T KOG1061|consen 232 KDS-R-EAEDICERLTPRL 248 (734)
T ss_pred CCc-h-hHHHHHHHhhhhh
Confidence 122 1 2345666665544
No 98
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=87.82 E-value=17 Score=38.08 Aligned_cols=183 Identities=15% Similarity=0.148 Sum_probs=100.8
Q ss_pred cccccCCCCCCCcchhHhhHHHHHHHhhc-cCCHhHHH--hHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCcccc
Q 002048 473 IVPELQSPDVNAFPMLKAGALKFFTMFRI-QIPKIHAF--QFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRY 549 (975)
Q Consensus 473 v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~-~~~~~~~~--~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~ 549 (975)
++..|+.. ..|+++.+|+..++..+. ..+.+... ..++.+.+.|.+++..||..|..||..+....+
T Consensus 17 Ll~lL~~t---~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e------- 86 (254)
T PF04826_consen 17 LLCLLEST---EDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE------- 86 (254)
T ss_pred HHHHHhcC---CChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh-------
Confidence 34445542 579999999999998654 22333333 478889999999999999999999998755432
Q ss_pred ccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh-h--ccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHH
Q 002048 550 NSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG-V--AEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLF 626 (975)
Q Consensus 550 ~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~-~--~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~ 626 (975)
....++.|++.+++.....- .+ .... +.+ .+++. + .++........++.+..+| .. ++......++
T Consensus 87 n~~~Ik~~i~~Vc~~~~s~~--ln--s~~Q-~ag-LrlL~nLtv~~~~~~~l~~~i~~ll~LL---~~--G~~~~k~~vL 155 (254)
T PF04826_consen 87 NQEQIKMYIPQVCEETVSSP--LN--SEVQ-LAG-LRLLTNLTVTNDYHHMLANYIPDLLSLL---SS--GSEKTKVQVL 155 (254)
T ss_pred hHHHHHHHHHHHHHHHhcCC--CC--CHHH-HHH-HHHHHccCCCcchhhhHHhhHHHHHHHH---Hc--CChHHHHHHH
Confidence 34567778888888776521 11 1111 112 23333 2 2221111111223333333 21 2222333444
Q ss_pred HHHHHHHHHhhhcCcchHHH-HHHhhHHHHHHHHhcc-cccchHHHHHHHHHHHHhc
Q 002048 627 ESVAVLVRRACQRDPSLISA-FEASILPSLQIILQND-VTEFLPYAFQLLAQLIELN 681 (975)
Q Consensus 627 e~l~~li~~~~~~~~~~~~~-l~~~l~P~i~~il~~~-~~~~~~~~l~ll~~ll~~~ 681 (975)
.++.. . +.+|+.... +.....+.+..+++.+ ..+.+-.++-++..+-++.
T Consensus 156 k~L~n---L--S~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 156 KVLVN---L--SENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENI 207 (254)
T ss_pred HHHHH---h--ccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence 44333 2 345664433 3344556666666654 3456666666666665543
No 99
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=87.67 E-value=0.57 Score=35.79 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCC
Q 002048 525 VVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPE 573 (975)
Q Consensus 525 ~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~ 573 (975)
.||..|+.+|.++... ..+.+.|+++.++..|..++++.+
T Consensus 2 ~vR~~A~~aLg~l~~~---------~~~~~~~~~~~~~~~L~~~L~d~~ 41 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEG---------CPELLQPYLPELLPALIPLLQDDD 41 (55)
T ss_dssp HHHHHHHHHHHCTTTT---------THHHHHHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHhhHhcc---------cHHHHHHHHHHHHHHHHHHHcCCC
Confidence 6899999999985544 256789999999999999997754
No 100
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=87.60 E-value=8 Score=37.74 Aligned_cols=98 Identities=19% Similarity=0.200 Sum_probs=62.0
Q ss_pred cccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh--hccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHH
Q 002048 551 SADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG--VAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFES 628 (975)
Q Consensus 551 ~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~--~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~ 628 (975)
.=++.+|++-.++.|. +.+..-+-.....+..++. .++.+.|..++++..|-..+ |..|+.....++++
T Consensus 33 ~Ldy~~~Lpif~dGL~----Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL-----~tr~~~V~~~~L~~ 103 (183)
T PF10274_consen 33 KLDYHHYLPIFFDGLR----ETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRAL-----NTRDPEVFCATLKA 103 (183)
T ss_pred hcchhhHHHHHHhhhh----ccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHH
Confidence 3356788888888876 3322122233445555555 56778888887777766655 44566666788888
Q ss_pred HHHHHHHhhhcCcchHHHHHHhhHHHHHHH
Q 002048 629 VAVLVRRACQRDPSLISAFEASILPSLQII 658 (975)
Q Consensus 629 l~~li~~~~~~~~~~~~~l~~~l~P~i~~i 658 (975)
+..|+.+- +.-.+....+..+++|++...
T Consensus 104 Lq~Lv~~~-~~vG~aLvPyyrqLLp~ln~f 132 (183)
T PF10274_consen 104 LQQLVTSS-DMVGEALVPYYRQLLPVLNLF 132 (183)
T ss_pred HHHHHHhh-hhhhHHHHHHHHHHHHHHHHH
Confidence 88887663 333455666667777777743
No 101
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=87.40 E-value=2.7 Score=40.96 Aligned_cols=91 Identities=19% Similarity=0.190 Sum_probs=72.4
Q ss_pred HHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHH
Q 002048 508 AFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRV 587 (975)
Q Consensus 508 ~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~v 587 (975)
+...+|..+..|...+-|-+..|..++..++... ..+.+.|.+++++.-+-+.++..+.......++++..+
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~--------~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~L 107 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERG--------GGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQL 107 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhc--------chhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 5677888999999988899999999999988762 36689999999999999999887655555666777666
Q ss_pred H---h-hccchhhhHHHHHHHHH
Q 002048 588 L---G-VAEISNEVAAPCISGLT 606 (975)
Q Consensus 588 i---~-~~~~i~p~~~~l~~~L~ 606 (975)
+ . .++.+.||..+++..+.
T Consensus 108 v~~~~~vG~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 108 VTSSDMVGEALVPYYRQLLPVLN 130 (183)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHH
Confidence 3 3 68888899887766544
No 102
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.73 E-value=78 Score=37.83 Aligned_cols=222 Identities=15% Similarity=0.157 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHH-------HHhhHH---H-HHHHHHHHHhccCCCCcchHHHHHHHHHHHhhchhhhhhcc
Q 002048 277 DGLRAAVCENISLYMKMNEEE-------FQGYLN---D-FALAVWTLLGNVSQSSSRDSLAVTAIKFLTNVSTSVHHTLF 345 (975)
Q Consensus 277 ~~~k~~~~~~l~~~~~~~~~~-------f~~~~~---~-~~~~~~~~l~~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~~ 345 (975)
..+|-.+.+++++.+..||.. ..+.+. . +-......+.+.+....-+++..++-.|.+.++ ..++-+.
T Consensus 296 ~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~dis-DeFKivv 374 (865)
T KOG1078|consen 296 VALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDIS-DEFKIVV 374 (865)
T ss_pred HHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc-ccceEEe
Confidence 356667889999999888732 222221 1 222234445555655566788888888888771 1111111
Q ss_pred cCCCchhhHHHHhhcccCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHhhh---hhHHHHHHHHHH
Q 002048 346 AGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQ---HVMETVSVQIQN 422 (975)
Q Consensus 346 ~~~~~l~~l~~~li~~~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~~~~~---~~~~~l~~~i~~ 422 (975)
-+.+..+|. .+|.-... . ..|+.+-+-.+-.+.-+++..+.+-.+.+..++ .....+..||..
T Consensus 375 --vdai~sLc~--~fp~k~~~---~-------m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIED 440 (865)
T KOG1078|consen 375 --VDAIRSLCL--KFPRKHTV---M-------MNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIED 440 (865)
T ss_pred --HHHHHHHHh--hccHHHHH---H-------HHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHh
Confidence 122233321 12221100 0 112111110111244466777777777765443 223333344432
Q ss_pred HHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhcc
Q 002048 423 LLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQ 502 (975)
Q Consensus 423 ~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~ 502 (975)
....+-+...++.++ .+|....++ -.... ++...+.- .+.++|+.|.-++.+|.-+
T Consensus 441 ------------ce~~~i~~rILhlLG---~EgP~a~~P-skyir----~iyNRviL----En~ivRaaAv~alaKfg~~ 496 (865)
T KOG1078|consen 441 ------------CEFTQIAVRILHLLG---KEGPKAPNP-SKYIR----FIYNRVIL----ENAIVRAAAVSALAKFGAQ 496 (865)
T ss_pred ------------ccchHHHHHHHHHHh---ccCCCCCCc-chhhH----HHhhhhhh----hhhhhHHHHHHHHHHHhcC
Confidence 122333444555443 344332222 11223 33333322 4789999999999999822
Q ss_pred CCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 002048 503 IPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLL 538 (975)
Q Consensus 503 ~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~ 538 (975)
.+.....+.-.+-+|+.|.+--||-.|..+++.+.
T Consensus 497 -~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 497 -DVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred -CCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 23456777888889999999999999999998765
No 103
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=85.94 E-value=1.2e+02 Score=39.24 Aligned_cols=35 Identities=11% Similarity=0.291 Sum_probs=23.3
Q ss_pred hHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHcc
Q 002048 506 IHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQV 540 (975)
Q Consensus 506 ~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~ 540 (975)
..+..++..++..|+.+...||..|..||..+++.
T Consensus 812 ~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~ 846 (1692)
T KOG1020|consen 812 QSFDPYLKLILSVLGENAIALRTKALKCLSMIVEA 846 (1692)
T ss_pred HhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhc
Confidence 34566666666667766677777777777766654
No 104
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.76 E-value=33 Score=40.71 Aligned_cols=69 Identities=19% Similarity=0.340 Sum_probs=53.4
Q ss_pred HHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHcc
Q 002048 465 VQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQV 540 (975)
Q Consensus 465 ~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~ 540 (975)
.--...+.++.+..+ +.|.+|+-|+...+..+-. .....++..+..+++|.+..||..|+.+...+-..
T Consensus 83 ~a~~avnt~~kD~~d----~np~iR~lAlrtm~~l~v~---~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~ 151 (734)
T KOG1061|consen 83 LAILAVNTFLKDCED----PNPLIRALALRTMGCLRVD---KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI 151 (734)
T ss_pred HHHhhhhhhhccCCC----CCHHHHHHHhhceeeEeeh---HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcC
Confidence 334445556666666 5899999999887765542 45677888999999999999999999999887655
No 105
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=85.30 E-value=7.8 Score=42.22 Aligned_cols=160 Identities=16% Similarity=0.220 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHH-HHh---ccccc-chHHHHHHHHHHHHhcCCCCchhHHHHHHhhcC
Q 002048 624 YLFESVAVLVRRACQRDPSLISAFEASILPSLQI-ILQ---NDVTE-FLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLS 698 (975)
Q Consensus 624 ~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~-il~---~~~~~-~~~~~l~ll~~ll~~~~~~~~~~~~~lf~~l~~ 698 (975)
.++..+.+.++.. ++ ...+...++|.+.. +|. +...+ -.++++.++++++......+.+....++..+..
T Consensus 46 eIL~Li~t~i~~~----~~-~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~ 120 (319)
T PF08767_consen 46 EILKLIETFISKA----ED-PEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFE 120 (319)
T ss_dssp HHHHHHHHHHHT-----S--HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc----CC-HHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 4555555655542 22 22344455555443 443 22223 247899999999988654344444444444443
Q ss_pred ccc---cccC----CCccchHHHHHHHHccCccchhcc--CchHHHHHHHHHhhcCCCCc--chHHHHHHHHHHhcch--
Q 002048 699 PDS---WKRS----SNVPALVRLLQAFLQKVPREIAQE--GKLREVLGIFNMLVLSPSTD--EQGFYVLNTIVESLEY-- 765 (975)
Q Consensus 699 ~~l---~~~~----~~l~~~~~~L~~~i~~~~~~~~~~--~~~~~il~i~~~ll~~~~~~--~~a~~ll~~ii~~~~~-- 765 (975)
+++ -++. +.-.+...+|++.+..+.+.+.+- +....+++.+.-.+.+...+ ..|++++..++.++..
T Consensus 121 ~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~ 200 (319)
T PF08767_consen 121 CTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTN 200 (319)
T ss_dssp HHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 321 1222 244667788888888888877653 34556666666666655444 4588888999888754
Q ss_pred -h----hHhhhHHHHHHHHHHHhhcCch
Q 002048 766 -G----VIAQFVPHIWGVLFTRLQNKRT 788 (975)
Q Consensus 766 -~----~~~~~l~~il~~~l~~L~~~~~ 788 (975)
+ .++.|.-.+++.++.-+....+
T Consensus 201 ~~~~~~F~~~y~~~il~~if~vltD~~H 228 (319)
T PF08767_consen 201 PEFANQFYQQYYLDILQDIFSVLTDSDH 228 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCccc
Confidence 1 2345555566666666655443
No 106
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.67 E-value=92 Score=36.77 Aligned_cols=53 Identities=19% Similarity=0.227 Sum_probs=32.9
Q ss_pred chhhhHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhh
Q 002048 390 VDTRRRIACELLKGIATH-YRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKK 452 (975)
Q Consensus 390 ~~s~R~~A~~ll~~L~~~-~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~ 452 (975)
.-|+|.=|.++|.++|+. .-+.++.-+++|+. +.+...||-...=+..++++.
T Consensus 382 DvSirrravDLLY~mcD~~Nak~IV~elLqYL~----------tAd~sireeivlKvAILaEKy 435 (938)
T KOG1077|consen 382 DVSIRRRAVDLLYAMCDVSNAKQIVAELLQYLE----------TADYSIREEIVLKVAILAEKY 435 (938)
T ss_pred chHHHHHHHHHHHHHhchhhHHHHHHHHHHHHh----------hcchHHHHHHHHHHHHHHHHh
Confidence 357888899999999975 23444444444443 245566666555555566654
No 107
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=84.47 E-value=12 Score=40.88 Aligned_cols=96 Identities=15% Similarity=0.242 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhcccccc---hHHHHHHHHHHHHhcCC---CCchhHHHHHHhh
Q 002048 623 HYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDVTEF---LPYAFQLLAQLIELNRP---PLSSNYMQIFNLL 696 (975)
Q Consensus 623 ~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~~~~~---~~~~l~ll~~ll~~~~~---~~~~~~~~lf~~l 696 (975)
..++.+++++++.+.+...+....+.+.++-....++.+|..+| ...-+.++..+++.+.. .+|+.. |..+
T Consensus 90 ~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~---f~~~ 166 (319)
T PF08767_consen 90 PEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQ---FKLV 166 (319)
T ss_dssp HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHH---HHHH
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHH---HHHH
Confidence 57999999999998554455566666666555555566655543 44578899999888652 244433 3334
Q ss_pred cCcccccc----CCCccchHHHHHHHHcc
Q 002048 697 LSPDSWKR----SSNVPALVRLLQAFLQK 721 (975)
Q Consensus 697 ~~~~l~~~----~~~l~~~~~~L~~~i~~ 721 (975)
+....|.- .+.-..++.++..++.+
T Consensus 167 idsi~wg~kh~~~~I~~~~L~~l~~ll~~ 195 (319)
T PF08767_consen 167 IDSIVWGFKHTNREISETGLNILLELLNN 195 (319)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 44445652 22334444555544443
No 108
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.24 E-value=95 Score=36.64 Aligned_cols=212 Identities=18% Similarity=0.208 Sum_probs=110.3
Q ss_pred CchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHH-HhhccCCHhHHHhHH
Q 002048 434 NWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFT-MFRIQIPKIHAFQFF 512 (975)
Q Consensus 434 ~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~-~f~~~~~~~~~~~~~ 512 (975)
|....--||..+|.++.+-. -+. |..-|-..|.+++ ..+++|-.|+.++= -|++.-+-..-..-.
T Consensus 124 n~~fv~LAL~~I~niG~re~-----------~ea-~~~DI~KlLvS~~--~~~~vkqkaALclL~L~r~spDl~~~~~W~ 189 (938)
T KOG1077|consen 124 NPTFVCLALHCIANIGSREM-----------AEA-FADDIPKLLVSGS--SMDYVKQKAALCLLRLFRKSPDLVNPGEWA 189 (938)
T ss_pred CcHHHHHHHHHHHhhccHhH-----------HHH-hhhhhHHHHhCCc--chHHHHHHHHHHHHHHHhcCccccChhhHH
Confidence 34555567777777754321 111 1112222344432 47888877765554 476531111233456
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhhcc
Q 002048 513 PDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLGVAE 592 (975)
Q Consensus 513 ~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~~~~ 592 (975)
+-+++.|+|.++.|-+.|..-+..++... ++...-.++..+..|..+.......-.+|.-
T Consensus 190 ~riv~LL~D~~~gv~ta~~sLi~~lvk~~---------p~~yk~~~~~avs~L~riv~~~~t~~qdYTy----------- 249 (938)
T KOG1077|consen 190 QRIVHLLDDQHMGVVTAATSLIEALVKKN---------PESYKTCLPLAVSRLSRIVVVVGTSLQDYTY----------- 249 (938)
T ss_pred HHHHHHhCccccceeeehHHHHHHHHHcC---------CHHHhhhHHHHHHHHHHHHhhcccchhhcee-----------
Confidence 77889999999888877776666655432 3444445555555555443322211011100
Q ss_pred chhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCc-----chHHHHHHhhHHHHHHHHhcccc-cc
Q 002048 593 ISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDP-----SLISAFEASILPSLQIILQNDVT-EF 666 (975)
Q Consensus 593 ~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~-----~~~~~l~~~l~P~i~~il~~~~~-~~ 666 (975)
-..| ++=+..+++.+++ ....|+|+.-...++|++..++... ...| .....-...++..|..++.-|.. +.
T Consensus 250 y~vP-~PWL~vKl~rlLq-~~p~~~D~~~r~~l~evl~~iLnk~-~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~l 326 (938)
T KOG1077|consen 250 YFVP-APWLQVKLLRLLQ-IYPTPEDPSTRARLNEVLERILNKA-QEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPEL 326 (938)
T ss_pred ecCC-ChHHHHHHHHHHH-hCCCCCCchHHHHHHHHHHHHHhcc-ccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHH
Confidence 0001 1223445555443 3356677776777888888777664 2111 11222233556666665554433 56
Q ss_pred hHHHHHHHHHHHHhcC
Q 002048 667 LPYAFQLLAQLIELNR 682 (975)
Q Consensus 667 ~~~~l~ll~~ll~~~~ 682 (975)
+..+...|+.++..+.
T Consensus 327 l~~~~~~Lg~fls~rE 342 (938)
T KOG1077|consen 327 LSRAVNQLGQFLSHRE 342 (938)
T ss_pred HHHHHHHHHHHhhccc
Confidence 6677777777766543
No 109
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=83.33 E-value=7.6 Score=49.12 Aligned_cols=79 Identities=15% Similarity=0.075 Sum_probs=49.7
Q ss_pred CCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHH
Q 002048 433 ANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFF 512 (975)
Q Consensus 433 ~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~ 512 (975)
+++..|.+|+.++|.+... -... ..+...+.+ +++.+|..|++.++.... .+.+
T Consensus 787 ~d~~VR~aA~~aLg~~g~~-----------~~~~----~~l~~aL~d----~d~~VR~~Aa~aL~~l~~-------~~a~ 840 (897)
T PRK13800 787 PDPLVRAAALAALAELGCP-----------PDDV----AAATAALRA----SAWQVRQGAARALAGAAA-------DVAV 840 (897)
T ss_pred CCHHHHHHHHHHHHhcCCc-----------chhH----HHHHHHhcC----CChHHHHHHHHHHHhccc-------cchH
Confidence 4577777777777765210 0011 123334444 467788888888876543 2345
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHH
Q 002048 513 PDLVRFLGAESNVVHSYAASCIEKL 537 (975)
Q Consensus 513 ~~l~~~L~~~~~~V~~~Aa~aL~~~ 537 (975)
+.++.+|+|++..||..|+.+|..+
T Consensus 841 ~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 841 PALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 7777788888888888888888763
No 110
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=83.32 E-value=16 Score=35.21 Aligned_cols=67 Identities=13% Similarity=0.221 Sum_probs=43.5
Q ss_pred HhHHHHHHHhhcCCCchHHH-HHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 002048 509 FQFFPDLVRFLGAESNVVHS-YAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCI 584 (975)
Q Consensus 509 ~~~~~~l~~~L~~~~~~V~~-~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l 584 (975)
.-++..+++.|+|+++.-+- .+..|+-.++... ...-.||++.++..++..+...+..-.|.+..-+
T Consensus 85 ~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l---------~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL 152 (160)
T PF11865_consen 85 TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSL---------GLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQL 152 (160)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc---------CcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHH
Confidence 34678888889998655544 3566666655332 1233899999999999998876543444444333
No 111
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.07 E-value=74 Score=38.43 Aligned_cols=136 Identities=16% Similarity=0.127 Sum_probs=91.0
Q ss_pred CcchhHhhHHHHHHHhhc---cCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHH
Q 002048 484 AFPMLKAGALKFFTMFRI---QIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSV 560 (975)
Q Consensus 484 ~~~~Lr~ra~~~l~~f~~---~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~ 560 (975)
+.+-+|+.++..+..|.+ ..+...-..++...+..|.|.+.=|.+.|..++..+|+.- ++.+ ++.
T Consensus 739 ~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy---------~e~i---l~d 806 (982)
T KOG4653|consen 739 DQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY---------PEDI---LPD 806 (982)
T ss_pred CcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc---------chhh---HHH
Confidence 467789999999998754 3445667889999999999999999999998888888762 2232 444
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHh
Q 002048 561 LMTSLFNAFKFPESEENQYIMKCIMRVLG-VAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRA 636 (975)
Q Consensus 561 il~~L~~ll~~~~~~~~~~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~ 636 (975)
+.+.....-+....+..-.+-+++++++. .++-+..|...+++. +.....+| +..++...+..++.+....
T Consensus 807 L~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~t----fl~gvrep-d~~~RaSS~a~lg~Lcq~~ 878 (982)
T KOG4653|consen 807 LSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINT----FLSGVREP-DHEFRASSLANLGQLCQLL 878 (982)
T ss_pred HHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHH----HHHhcCCc-hHHHHHhHHHHHHHHHHHH
Confidence 44444433222211122245578999999 888888887655544 33334444 4456666677777776664
No 112
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=82.59 E-value=8.1 Score=33.24 Aligned_cols=60 Identities=20% Similarity=0.169 Sum_probs=42.5
Q ss_pred cchhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHH
Q 002048 389 DVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLA 449 (975)
Q Consensus 389 d~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia 449 (975)
+.+..|.-|.+++..++++|+... +.+..-+...+...-.+|+..+...++|+..+..++
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~-~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSY-PTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 467899999999999999987532 223333444443333456667889999999998874
No 113
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=81.42 E-value=82 Score=34.17 Aligned_cols=164 Identities=15% Similarity=0.168 Sum_probs=94.4
Q ss_pred HHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHH
Q 002048 507 HAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMR 586 (975)
Q Consensus 507 ~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~ 586 (975)
.+..-+...+..+.+...-.|..|-.++..++..+ ...+.+......++..+.+.++.....+.....+++.-
T Consensus 40 ~~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~-------~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~L 112 (309)
T PF05004_consen 40 DLEDKLKEAIDLLTEKSSSTREAALEALIRALSSR-------YLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALAL 112 (309)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 34444666677777778888988888888887654 23567778889999999999987654333333344433
Q ss_pred HHh-hccchhhhHHHHHHHHHHHHHHHHhCCCC-CchhHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHH-Hhcc-
Q 002048 587 VLG-VAEISNEVAAPCISGLTSILNEVCKNPKS-PIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQII-LQND- 662 (975)
Q Consensus 587 vi~-~~~~i~p~~~~l~~~L~~~l~~~~~~~~~-~~~~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~i-l~~~- 662 (975)
++. ++.. .....+...+.+.|..+..+.+. +..+..+..|++.+.-. |+..++.+....+.+=-++... .+.+
T Consensus 113 l~ltlg~g--~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv-~~~d~~~~~~~~~~le~if~~~~~~~~~ 189 (309)
T PF05004_consen 113 LALTLGAG--EDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFV-GGSDEEETEELMESLESIFLLSILKSDG 189 (309)
T ss_pred HhhhcCCC--ccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHh-hcCChhHHHHHHHHHHHHHHHHhcCcCC
Confidence 323 4411 12345556666666666655443 44556788888765544 3445555543223222222221 1111
Q ss_pred ---------cccchHHHHHHHHHHHHh
Q 002048 663 ---------VTEFLPYAFQLLAQLIEL 680 (975)
Q Consensus 663 ---------~~~~~~~~l~ll~~ll~~ 680 (975)
...+...+++-|+.++..
T Consensus 190 ~~~~~~~~~~~~l~~aAL~aW~lLlt~ 216 (309)
T PF05004_consen 190 NAPVVAAEDDAALVAAALSAWALLLTT 216 (309)
T ss_pred CcccccCCCccHHHHHHHHHHHHHHhc
Confidence 123556677777666643
No 114
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=81.21 E-value=3.5 Score=36.69 Aligned_cols=78 Identities=17% Similarity=0.193 Sum_probs=61.2
Q ss_pred CcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCC--CchHHHHHHHHHHHHHccccCCCccccccccccchHHHH
Q 002048 484 AFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAE--SNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVL 561 (975)
Q Consensus 484 ~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~--~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~i 561 (975)
....-|.|++.-++.... +..+....+.|-++.+|+.. ...+|..|..+-..|+..- +.+++.|.++++
T Consensus 27 ~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L--------~~~~l~~ll~~~ 97 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEIPELREEALSCWNCFIKTL--------DEEDLGPLLDQI 97 (107)
T ss_pred CCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC--------CHHHHHHHHHHH
Confidence 456789999999998877 55567777788888888763 3468889999989888763 467899999999
Q ss_pred HHHHHHhcC
Q 002048 562 MTSLFNAFK 570 (975)
Q Consensus 562 l~~L~~ll~ 570 (975)
+-.+++..+
T Consensus 98 ~~~l~~~~~ 106 (107)
T PF08064_consen 98 FAILLPLWD 106 (107)
T ss_pred HHHHHHhcc
Confidence 988887653
No 115
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=79.91 E-value=3 Score=29.47 Aligned_cols=29 Identities=28% Similarity=0.272 Sum_probs=26.3
Q ss_pred hHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 002048 510 QFFPDLVRFLGAESNVVHSYAASCIEKLL 538 (975)
Q Consensus 510 ~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~ 538 (975)
..+|.++++|.+++..|+..|++||..+.
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999865
No 116
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=79.72 E-value=30 Score=39.91 Aligned_cols=272 Identities=13% Similarity=0.136 Sum_probs=129.4
Q ss_pred hhHHHHHHHhhccCCH----hHHHhHHHHHHHhhc-----CCCchHHHHHHHHHHHHHccccCCCccccccccccchHHH
Q 002048 490 AGALKFFTMFRIQIPK----IHAFQFFPDLVRFLG-----AESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSV 560 (975)
Q Consensus 490 ~ra~~~l~~f~~~~~~----~~~~~~~~~l~~~L~-----~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~ 560 (975)
.+-||.+|..+..+++ +.+..++..++.+-. |+..+| |. .+.-. -+..++|-+ .--.++..
T Consensus 501 NtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVv---AS----nIMyv--vGQYpRFLk-ahw~FLkT 570 (1053)
T COG5101 501 NTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVV---AS----NIMYV--VGQYPRFLK-AHWSFLKT 570 (1053)
T ss_pred hHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhh---ec----ceeee--eccchHHHH-HHHHHHHH
Confidence 5679999988776653 455566665544321 222222 11 10000 011122211 12457889
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHHHHh-hccc--------hhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 002048 561 LMTSLFNAFKFPESEENQYIMKCIMRVLG-VAEI--------SNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAV 631 (975)
Q Consensus 561 il~~L~~ll~~~~~~~~~~l~~~l~~vi~-~~~~--------i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~ 631 (975)
++..||..|.+..+-..+...++...+++ |.-+ -.||...++..|..... .-.|.-.|...|+.+.
T Consensus 571 Vv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~-----dL~pqQ~htfYeAcg~ 645 (1053)
T COG5101 571 VVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTG-----DLEPQQKHTFYEACGM 645 (1053)
T ss_pred HHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcc-----cCChHHHhHHHHHHhH
Confidence 99999999987654444566677777777 6433 23555545444443221 0113335677777777
Q ss_pred HHHHhhhcCcchHHHHHHhhHHHHHHHHhc-----cc--ccch-HHHHHHHHHHHHhc----CC--------CCchhHHH
Q 002048 632 LVRRACQRDPSLISAFEASILPSLQIILQN-----DV--TEFL-PYAFQLLAQLIELN----RP--------PLSSNYMQ 691 (975)
Q Consensus 632 li~~~~~~~~~~~~~l~~~l~P~i~~il~~-----~~--~~~~-~~~l~ll~~ll~~~----~~--------~~~~~~~~ 691 (975)
+++... ....+.++.--++.+....+.+ +. .-+. +....+.+..+... .+ ..+..+..
T Consensus 646 vIse~p--~~~~~~rlv~dlm~Lpn~aw~niv~qa~~n~~~L~d~~tvki~an~~ktnVa~ctslg~~fyPq~~~~y~~m 723 (1053)
T COG5101 646 VISEVP--KTRDYKRLVLDLMDLPNSAWLNIVIQADENINRLSDTMTVKIDANKMKTNVAKCTSLGYRFYPQTCSSYCIM 723 (1053)
T ss_pred HHhccc--hhhHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHH
Confidence 776641 1122222222222221111110 00 0011 12223333322221 10 01111222
Q ss_pred HHHhhcCcc----------cc--ccC------CCccchHHHHHHHHccCcc-chhccCchHHHHH-HHHHhhcC--CCCc
Q 002048 692 IFNLLLSPD----------SW--KRS------SNVPALVRLLQAFLQKVPR-EIAQEGKLREVLG-IFNMLVLS--PSTD 749 (975)
Q Consensus 692 lf~~l~~~~----------l~--~~~------~~l~~~~~~L~~~i~~~~~-~~~~~~~~~~il~-i~~~ll~~--~~~~ 749 (975)
+|+...... +. +.+ ..-.+++.+...||+++.+ .++++..++++++ ++-..+++ ...|
T Consensus 724 l~ly~avs~~Is~~vaaeg~iatktp~vrglrtiKkEIlkLv~tyIska~dl~~V~n~lv~~l~eaVl~DY~nNvPdard 803 (1053)
T COG5101 724 LFLYFAVSFDISNSVAAEGLIATKTPAVRGLRTIKKEILKLVATYISKARDLKFVQNDLVNMLCEAVLFDYKNNVPDARD 803 (1053)
T ss_pred HHHHHHHHHHHHHHHHhcccccccCccccchHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 332211000 00 011 1235678899999999875 6677667777774 33344432 2235
Q ss_pred chHHHHHHHHHHhcchhhHhhhHHHHHHHH
Q 002048 750 EQGFYVLNTIVESLEYGVIAQFVPHIWGVL 779 (975)
Q Consensus 750 ~~a~~ll~~ii~~~~~~~~~~~l~~il~~~ 779 (975)
...+.+..++++++. +.+..-.+-++..+
T Consensus 804 aevLnl~ttiV~~v~-~~i~~~~~l~l~sv 832 (1053)
T COG5101 804 AEVLNLGTTIVRNVE-SVIYLQRELFLISV 832 (1053)
T ss_pred HHHHHHHHHHHHHHH-HHhhhhhHHHHHHH
Confidence 667899999999974 44433334444333
No 117
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=79.15 E-value=81 Score=34.03 Aligned_cols=147 Identities=14% Similarity=0.089 Sum_probs=96.0
Q ss_pred HHhcCCChHHHHHHHHHHHHHhc-C----CChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCCCCcCCC
Q 002048 16 LHTLSPSPEPRRAAERSLAEMAD-R----PNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPTLAPI 90 (975)
Q Consensus 16 ~~tls~d~~~r~~AE~~L~~~~~-~----p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~~~~~i 90 (975)
.+..++|+.+|..|=.-|--+.- + ..+...+.+.+.+ + +..+|-.|.=.+=..+..|=....+... ..-
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~-~-~~~v~~~al~~l~Dll~~~g~~~~~~~~----~~~ 107 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQK-D-DEEVKITALKALFDLLLTHGIDIFDSES----DND 107 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh-C-CHHHHHHHHHHHHHHHHHcCchhccchh----ccC
Confidence 47778999999999888875542 2 2466677777744 3 7788887764433333333211111100 001
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccCCChhHHhHHHHHHHHHHHhh
Q 002048 91 LDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSIFKKF 170 (975)
Q Consensus 91 ~~e~K~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i~k~~ 170 (975)
.......+-+.+...+.+....+|...++.++++.-.+--..||+++..|+-..=++ .......--+||..++..|
T Consensus 108 ~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p----~t~~~~~LrQ~L~~Ffp~y 183 (298)
T PF12719_consen 108 ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNP----STEDNQRLRQCLSVFFPVY 183 (298)
T ss_pred ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCc----ccCCcHHHHHHHHHHHHHH
Confidence 233456677778888888878899999999999998877666799999888765444 1112224456888888888
Q ss_pred hc
Q 002048 171 RY 172 (975)
Q Consensus 171 ~~ 172 (975)
.+
T Consensus 184 ~~ 185 (298)
T PF12719_consen 184 AS 185 (298)
T ss_pred Hc
Confidence 75
No 118
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=78.98 E-value=1.2e+02 Score=34.37 Aligned_cols=160 Identities=13% Similarity=0.159 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhc
Q 002048 394 RRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVI 473 (975)
Q Consensus 394 R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v 473 (975)
|....+++..+-.++.. ..+.+...+.+.+.+|...+ ....--.-+|-.+|++-. |.+ .+-......|+.+++
T Consensus 150 R~~lk~~l~~iy~k~~~-~r~~Ir~~i~~~~~~fi~e~-~~~~gI~elLeil~sii~----gf~-~plk~eh~~fl~~vl 222 (409)
T PF01603_consen 150 RDYLKTILHRIYGKFPN-LRSFIRKSINNIFYRFIYET-ERHNGIAELLEILGSIIN----GFA-VPLKEEHKQFLRKVL 222 (409)
T ss_dssp HHHHHHHHHHHHHH-TT-THHHHHHHHHHHHHHHHHTT-S--STHHHHHHHHHHHHT----T---SS--HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCc-ccccCHHHHHHHHHHHHh----ccC-CCCcHHHHHHHHHHH
Confidence 44455556555554433 22445555555555553321 223334556677777754 332 111234568999999
Q ss_pred ccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCcccccccc
Q 002048 474 VPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSAD 553 (975)
Q Consensus 474 ~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~ 553 (975)
+|....+ ..+.-...-..++.+|.+. ++.....++..++++=--.+..=++.-..=+..+++. .+++.
T Consensus 223 lPLh~~~---~~~~y~~~L~~~~~~f~~k-dp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~--------~~~~~ 290 (409)
T PF01603_consen 223 LPLHKSP---HLSSYHQQLSYCVVQFLEK-DPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEV--------LPPEE 290 (409)
T ss_dssp GGGGGST---GGGGTHHHHHHHHHHHHHH--GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT----------HHH
T ss_pred HHHhcCC---cHHHHHHHHHHHHHHHHHh-CchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHh--------cCHHH
Confidence 9999874 3444455566777777654 2356667777777775444444444444455555554 34667
Q ss_pred ccchHHHHHHHHHHhcCCC
Q 002048 554 ITPYLSVLMTSLFNAFKFP 572 (975)
Q Consensus 554 l~p~l~~il~~L~~ll~~~ 572 (975)
+.+...+++..+..+++..
T Consensus 291 f~~i~~~lf~~la~ci~S~ 309 (409)
T PF01603_consen 291 FQKIMVPLFKRLAKCISSP 309 (409)
T ss_dssp HHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 8888999999999888775
No 119
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=78.91 E-value=21 Score=40.65 Aligned_cols=126 Identities=17% Similarity=0.139 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHhh-chhhhhhcccCCCchhh----HHHHhhcccCCCChhhHHHHh
Q 002048 300 GYLNDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNV-STSVHHTLFAGEGVIPQ----ICQNIVIPNVRLRDEDEELFE 374 (975)
Q Consensus 300 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~fl~~~-~~~~~~~~~~~~~~l~~----l~~~li~~~l~l~~~d~e~we 374 (975)
+++|.|+..+.+-+...- ..+.=+++...++...+. .++. +|. ++++.+ ++..+|-++|+.+++.
T Consensus 239 ~LlPyFv~fIae~vs~ni-~~~nL~lL~~lm~m~rSLl~Np~---i~l-epYlh~L~PSvlTCvVsk~l~~~p~~----- 308 (576)
T KOG2549|consen 239 QLLPYFVTFIAEGVSVNI-VQNNLELLIYLMRMVRSLLDNPN---IFL-EPYLHQLVPSVLTCVVSKNLCLRPEL----- 308 (576)
T ss_pred HHHHHHHHHHhhheeecc-ccccHHHHHHHHHHHHHHhcCCc---cch-hhHHHHHhhHHHHhhhhhhccCCccc-----
Confidence 456666666655432210 012234556666666666 4332 222 445444 4556667888877632
Q ss_pred hCHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHH
Q 002048 375 MNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLA 449 (975)
Q Consensus 375 ~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia 449 (975)
++.|..|.-|.+++..+|..|++..- .+-..|...+...-.++...|-..++++..+..+.
T Consensus 309 -------------dnhwaLRDfAA~ll~~i~k~f~~~y~-~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg 369 (576)
T KOG2549|consen 309 -------------DNHWALRDFAARLLAQICKNFSTLYN-NLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELG 369 (576)
T ss_pred -------------cchHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhh
Confidence 23577899999999999999986543 24455555554443445567888999888777764
No 120
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=78.28 E-value=20 Score=45.42 Aligned_cols=115 Identities=19% Similarity=0.215 Sum_probs=71.4
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHhcCCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCCCCcCCCCHH
Q 002048 14 CFLHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPTLAPILDA 93 (975)
Q Consensus 14 ~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~~~~~i~~e 93 (975)
++...-++|+.+|+.|=+.|.+.. .|+....|...+.++ +..+|..|+-.|..... .+ +..
T Consensus 626 L~~~L~D~d~~VR~~Av~~L~~~~-~~~~~~~L~~aL~D~--d~~VR~~Aa~aL~~l~~-~~---------------~~~ 686 (897)
T PRK13800 626 LAPYLADPDPGVRRTAVAVLTETT-PPGFGPALVAALGDG--AAAVRRAAAEGLRELVE-VL---------------PPA 686 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHhhhc-chhHHHHHHHHHcCC--CHHHHHHHHHHHHHHHh-cc---------------Cch
Confidence 333334788888888888888764 466777777777443 67888888777755421 11 111
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccCCChhHHhHHHHHHHH
Q 002048 94 EKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANS 165 (975)
Q Consensus 94 ~K~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~ 165 (975)
..+...|.+++..+|.....++..+...+ ...+...+.+. |+.....+...|..
T Consensus 687 ------~~L~~~L~~~d~~VR~~A~~aL~~~~~~~--------~~~l~~~L~D~----d~~VR~~Av~aL~~ 740 (897)
T PRK13800 687 ------PALRDHLGSPDPVVRAAALDVLRALRAGD--------AALFAAALGDP----DHRVRIEAVRALVS 740 (897)
T ss_pred ------HHHHHHhcCCCHHHHHHHHHHHHhhccCC--------HHHHHHHhcCC----CHHHHHHHHHHHhc
Confidence 23444555556678888888777764222 23456667666 76666666655544
No 121
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=76.19 E-value=2 Score=45.15 Aligned_cols=98 Identities=14% Similarity=0.108 Sum_probs=60.5
Q ss_pred CchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhc----cCCHhHHH
Q 002048 434 NWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRI----QIPKIHAF 509 (975)
Q Consensus 434 ~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~----~~~~~~~~ 509 (975)
+-+..--+++++|.|..+. +.-+++ .++. . +...+.+.|.+ +..-+|..|||.++.... ++..-.=.
T Consensus 298 sa~iqtPalR~vGNIVTG~-D~QTqv--iI~~-G-~L~a~~~lLs~----~ke~irKEaCWTiSNITAGnteqiqavid~ 368 (526)
T COG5064 298 SAKIQTPALRSVGNIVTGS-DDQTQV--IINC-G-ALKAFRSLLSS----PKENIRKEACWTISNITAGNTEQIQAVIDA 368 (526)
T ss_pred cccccCHHHHhhcCeeecC-ccceeh--heec-c-cHHHHHHHhcC----hhhhhhhhhheeecccccCCHHHHHHHHhc
Confidence 3344556788888775322 111111 1110 0 11223444555 344799999999998743 22222334
Q ss_pred hHHHHHHHhhcCCCchHHHHHHHHHHHHHcc
Q 002048 510 QFFPDLVRFLGAESNVVHSYAASCIEKLLQV 540 (975)
Q Consensus 510 ~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~ 540 (975)
.++|.+++.|...+.-.+-.||+|+.+....
T Consensus 369 nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 369 NLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 5789999999999999999999999986554
No 122
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=76.10 E-value=1.4e+02 Score=33.59 Aligned_cols=158 Identities=13% Similarity=0.193 Sum_probs=95.9
Q ss_pred HHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCC-------hHH---HHHHHHHhcCcChHHHHHHHHHHHhhhhcccCC
Q 002048 9 QHLSQCFLHTLSP-SPEPRRAAERSLAEMADRPN-------YGL---AVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAP 77 (975)
Q Consensus 9 ~~l~~~L~~tls~-d~~~r~~AE~~L~~~~~~p~-------f~~---~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~ 77 (975)
+.+.+.|.+.-+. ..+.|+.|-.+|..+...-+ |.. .+++++.+ +.+..+|.+|.=.++...+..=..
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d-~~~~~~k~laLrvL~~ml~~Q~~~ 364 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSD-SEDEIIKKLALRVLREMLTNQPAR 364 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHcc-chhhHHHHHHHHHHHHHHHhchHh
Confidence 4556666665554 45688888888887765442 333 33344444 457889999998888888763321
Q ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccCCChhHH
Q 002048 78 ASDRNSGPTLAPILDAEKDQIKSLIVGLMLTSTPR-IQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSI 156 (975)
Q Consensus 78 ~~~~~~~~~~~~i~~e~K~~Ir~~ll~~l~~~~~~-ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~~~~ 156 (975)
+- +.-+..-...+++-.+..+. .+.+--.|....+.++ |.+ =+..+..++.+. |....
T Consensus 365 ------------l~-DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~-P~~---~I~~i~~~Ilt~----D~~~~ 423 (516)
T KOG2956|consen 365 ------------LF-DSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHL-PLQ---CIVNISPLILTA----DEPRA 423 (516)
T ss_pred ------------hh-chHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhC-chh---HHHHHhhHHhcC----cchHH
Confidence 11 12233445667776666655 4444444555555555 532 344555566666 66666
Q ss_pred hHHHHHHHHHHHhhhccccchhhhhhHHHHHHHhhHHHHH
Q 002048 157 NGILGTANSIFKKFRYQFKTNDLLLDLKYCLDNFAAPLLE 196 (975)
Q Consensus 157 ~~~L~~l~~i~k~~~~~~~~~~~~~~l~~il~~~~~~l~~ 196 (975)
-.++.++.++|++.. -+ ++..+++.++|.++.
T Consensus 424 ~~~iKm~Tkl~e~l~----~E----eL~~ll~diaP~~iq 455 (516)
T KOG2956|consen 424 VAVIKMLTKLFERLS----AE----ELLNLLPDIAPCVIQ 455 (516)
T ss_pred HHHHHHHHHHHhhcC----HH----HHHHhhhhhhhHHHH
Confidence 677888899998763 22 566677777775543
No 123
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=75.92 E-value=57 Score=34.89 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=40.4
Q ss_pred HHHHHHHH-HHhcccCCCCCCchHHHHHHHhcccccCCChhHHhHHHHHHHHHHHhhh
Q 002048 115 SQLSEALV-VVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSIFKKFR 171 (975)
Q Consensus 115 ~qla~~i~-~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i~k~~~ 171 (975)
..++.++. ..-+.+.-+.||-++|-++..+... ++.....|+.+|++++++..
T Consensus 98 ~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~----~~~~K~~G~~lL~~ll~~~~ 151 (282)
T PF10521_consen 98 HVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDY----SPEIKIQGCQLLHHLLEKVP 151 (282)
T ss_pred HHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCC----CHHHHHHHHHHHHHHHHhCC
Confidence 55666666 3333333368999999999999988 77888889999999998764
No 124
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=74.51 E-value=1.6e+02 Score=33.44 Aligned_cols=115 Identities=18% Similarity=0.151 Sum_probs=70.8
Q ss_pred cchHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCcccccc---CCCccchHHHHHHHHccCccchhccCchHHHHHHHHH
Q 002048 665 EFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKR---SSNVPALVRLLQAFLQKVPREIAQEGKLREVLGIFNM 741 (975)
Q Consensus 665 ~~~~~~l~ll~~ll~~~~~~~~~~~~~lf~~l~~~~l~~~---~~~l~~~~~~L~~~i~~~~~~~~~~~~~~~il~i~~~ 741 (975)
.-+.++|+++++++.+-..|+.+....+|-.++-|. ... ..+-+.+..|+..|+.++|.-. ..++.-+-+
T Consensus 190 ~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPL-h~~~~~~~y~~~L~~~~~~f~~kdp~l~------~~~i~~llk 262 (409)
T PF01603_consen 190 NGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPL-HKSPHLSSYHQQLSYCVVQFLEKDPSLA------EPVIKGLLK 262 (409)
T ss_dssp STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGG-GGSTGGGGTHHHHHHHHHHHHHH-GGGH------HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHHhCchhH------HHHHHHHHH
Confidence 346789999999999876678888887776665543 222 2377899999999999988643 223322222
Q ss_pred hhcCCCC---cchHHHHHHHHHHhcchhhHhhhHHHHHHHHHHHhhcCc
Q 002048 742 LVLSPST---DEQGFYVLNTIVESLEYGVIAQFVPHIWGVLFTRLQNKR 787 (975)
Q Consensus 742 ll~~~~~---~~~a~~ll~~ii~~~~~~~~~~~l~~il~~~l~~L~~~~ 787 (975)
.- +..+ +..-++.++.++..++.+.+......+++.+...+.+..
T Consensus 263 ~W-P~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h 310 (409)
T PF01603_consen 263 HW-PKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPH 310 (409)
T ss_dssp HS--SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSS
T ss_pred hC-CCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 21 2222 233457788998888766777777777777777766543
No 125
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=73.42 E-value=1.3e+02 Score=31.79 Aligned_cols=79 Identities=13% Similarity=0.186 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHhhchhhhhhcccCCCchhhHHH
Q 002048 277 DGLRAAVCENISLYMKMNEEEFQGYLNDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNVSTSVHHTLFAGEGVIPQICQ 356 (975)
Q Consensus 277 ~~~k~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~~~~l~~l~~ 356 (975)
.+.|..+++++..+.++|.+.....-..|+..+.+.+ .+.+..+.+..+++.+..+. ..+ .+ .++..++.+
T Consensus 96 q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~----~gEkDPRnLl~~F~l~~~i~-~~~-~~---~~~~e~lFd 166 (262)
T PF14500_consen 96 QSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLI----DGEKDPRNLLLSFKLLKVIL-QEF-DI---SEFAEDLFD 166 (262)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHh----ccCCCHHHHHHHHHHHHHHH-Hhc-cc---chhHHHHHH
Confidence 5678899999999999998777666667777776654 23466788888888888771 111 12 566666665
Q ss_pred HhhcccCCC
Q 002048 357 NIVIPNVRL 365 (975)
Q Consensus 357 ~li~~~l~l 365 (975)
+++-|+.+
T Consensus 167 -~~~cYFPI 174 (262)
T PF14500_consen 167 -VFSCYFPI 174 (262)
T ss_pred -Hhhheeee
Confidence 55566543
No 126
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=73.19 E-value=7.5 Score=25.50 Aligned_cols=30 Identities=23% Similarity=0.229 Sum_probs=25.9
Q ss_pred hHHHHHHHhcccccCCChhHHhHHHHHHHHHHHh
Q 002048 136 LLPELIANLKDAAQSNNYVSINGILGTANSIFKK 169 (975)
Q Consensus 136 Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i~k~ 169 (975)
++|.+.+.++.+ ++..+..|..+|..+++.
T Consensus 1 llp~l~~~l~D~----~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDP----SPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-S----SHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCC----CHHHHHHHHHHHHHHHhh
Confidence 588999999988 999999999999999874
No 127
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.39 E-value=22 Score=37.51 Aligned_cols=131 Identities=10% Similarity=0.112 Sum_probs=80.3
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHH
Q 002048 391 DTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFT 470 (975)
Q Consensus 391 ~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~ 470 (975)
|-...-+.++++.|....++.+.+.+-..|..+..+..+ + .--.--+|+..++.+...+... +.+.+.
T Consensus 102 W~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKN-l--RS~VsraA~~t~~difs~ln~~---------i~~~ld 169 (334)
T KOG2933|consen 102 WEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKN-L--RSAVSRAACMTLADIFSSLNNS---------IDQELD 169 (334)
T ss_pred HHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcC-h--HHHHHHHHHHHHHHHHHHHHHH---------HHHHHH
Confidence 445566788888888877777777777777776665321 1 1122334455555554433221 112222
Q ss_pred HhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 002048 471 SVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKL 537 (975)
Q Consensus 471 ~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~ 537 (975)
..+...+.... ....|+|..|-+.+-...++.+| ..+++.+..+++.....+|..|+.+..++
T Consensus 170 ~lv~~Ll~ka~-~dnrFvreda~kAL~aMV~~vtp---~~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 170 DLVTQLLHKAS-QDNRFVREDAEKALVAMVNHVTP---QKLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred HHHHHHHhhhc-ccchHHHHHHHHHHHHHHhccCh---HHHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 22233333222 14799999999999999887654 45667777778888888988888765553
No 128
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.38 E-value=1.4e+02 Score=36.35 Aligned_cols=169 Identities=13% Similarity=0.153 Sum_probs=102.7
Q ss_pred HhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHH
Q 002048 509 FQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVL 588 (975)
Q Consensus 509 ~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi 588 (975)
.+.++-.+..+.|+.+|+|.+|...|..+++.++ ....+ .-..+++..+..++.-+...--.+++.+..++
T Consensus 726 ~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~-------~~~~~--~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lc 796 (982)
T KOG4653|consen 726 IEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRK-------KATLI--QGEKVLAIALDTLKDEDSYVYLNAIRGVVSLC 796 (982)
T ss_pred HHHHHHHHHHhcCCcccchHHHHHHHHHHHHhcc-------hhhhh--hHHHHHHHHHHHhcccCceeeHHHHHHHHHHH
Confidence 3447778888999999999999999999988542 11222 24556777777776654322112233333444
Q ss_pred h-hccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhcccccch
Q 002048 589 G-VAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDVTEFL 667 (975)
Q Consensus 589 ~-~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~~~~~~ 667 (975)
. +.+.+. ..|..-..+..+.+ .+.....+=|++..++++. .+.+.++-+.+.-.+-..+......|-
T Consensus 797 evy~e~il-------~dL~e~Y~s~k~k~-~~d~~lkVGEai~k~~qa~----Gel~~~y~~~Li~tfl~gvrepd~~~R 864 (982)
T KOG4653|consen 797 EVYPEDIL-------PDLSEEYLSEKKKL-QTDYRLKVGEAILKVAQAL----GELVFKYKAVLINTFLSGVREPDHEFR 864 (982)
T ss_pred HhcchhhH-------HHHHHHHHhcccCC-CccceehHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 4 444443 33333222222221 1222334448888888775 466777777777777777765555677
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHhhcC
Q 002048 668 PYAFQLLAQLIELNRPPLSSNYMQIFNLLLS 698 (975)
Q Consensus 668 ~~~l~ll~~ll~~~~~~~~~~~~~lf~~l~~ 698 (975)
-.++-.++.+.......+++.+.+.+..+++
T Consensus 865 aSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~ 895 (982)
T KOG4653|consen 865 ASSLANLGQLCQLLAFQVSDFFHEVLQLILS 895 (982)
T ss_pred HhHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 7778888777766554577777777777766
No 129
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=72.19 E-value=1.7e+02 Score=32.73 Aligned_cols=169 Identities=15% Similarity=0.103 Sum_probs=94.7
Q ss_pred CCcchhhhHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHHhccCCC-CCchhHHHHHHHHHHHHhhh--cCCC
Q 002048 387 GSDVDTRRRIACELLKGIATHYRQ-------HVMETVSVQIQNLLTSFAANPV-ANWKDKDCAIYLVVSLATKK--AGST 456 (975)
Q Consensus 387 ~~d~~s~R~~A~~ll~~L~~~~~~-------~~~~~l~~~i~~~l~~~~~~~~-~~w~~keaal~~ig~ia~~~--~~g~ 456 (975)
+++-.++..|=..|...|...-+. .-.+.+.++++.-+..-....+ .+-+.--.|+.++|.+-..- .+..
T Consensus 4 ~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l 83 (372)
T PF12231_consen 4 GSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTL 83 (372)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhC
Confidence 444455555555555555433211 1234555666555543211112 25677788888888875332 2222
Q ss_pred ccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHH--hhcc-CCHhHHHhHHHHHHHhhcC--CCchHHHHHH
Q 002048 457 SISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTM--FRIQ-IPKIHAFQFFPDLVRFLGA--ESNVVHSYAA 531 (975)
Q Consensus 457 ~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~--f~~~-~~~~~~~~~~~~l~~~L~~--~~~~V~~~Aa 531 (975)
+ .|+..|+..+.+-.+..++ ...-+..+++|+++. |... ++.+.... +-.++..+.+ ++..|-.++.
T Consensus 84 ~-----~d~~~~~i~~~i~~l~~~~--~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~-l~~~l~~i~~~~~s~si~~erL 155 (372)
T PF12231_consen 84 S-----DDFASFIIDHSIESLQNPN--SPKSICTHYLWCLSDQKFSPKIMTSDRVER-LLAALHNIKNRFPSKSIISERL 155 (372)
T ss_pred C-----hHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHcCCCCCcccchhhHHH-HHHHHHHhhccCCchhHHHHHH
Confidence 1 4566677777777777654 467889999999995 7664 34443333 3344444443 4667777888
Q ss_pred HHHHHHHccccCCCccccccccccchHHHHHHHHHHh
Q 002048 532 SCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNA 568 (975)
Q Consensus 532 ~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~l 568 (975)
.++++++... +..-.....-.++.++..++..
T Consensus 156 ~i~~~ll~q~-----p~~M~~~~~~W~~~l~~~l~~~ 187 (372)
T PF12231_consen 156 NIYKRLLSQF-----PQQMIKHADIWFPILFPDLLSS 187 (372)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhc
Confidence 8889888742 1111223334566666666643
No 130
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=71.84 E-value=30 Score=43.32 Aligned_cols=168 Identities=13% Similarity=0.093 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHH---HhhhcCCCccccCcccHHH
Q 002048 394 RRIACELLKGIATHYRQHVM---ETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSL---ATKKAGSTSISTDLVDVQS 467 (975)
Q Consensus 394 R~~A~~ll~~L~~~~~~~~~---~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~i---a~~~~~g~~~~~~~~~~~~ 467 (975)
|+.|+-+|..|++.|+.... +.+.+++-.-++++... + |.-+.-++.. +... | ..+.+
T Consensus 750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~--~-----d~~~~s~~vf~s~~~~m--~-------s~l~~ 813 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDG--N-----DEFLSSFEVFNSLAPLM--H-------SFLHP 813 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCC--C-----cchhhhHHHHHHHHHhh--h-------hhhhh
Confidence 77788899999999987654 33445555555544322 1 1111212211 1110 0 00111
Q ss_pred HH--HHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCC
Q 002048 468 FF--TSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGG 545 (975)
Q Consensus 468 ~l--~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~ 545 (975)
.+ ...++..+.+ .++.+|..|+.+++.+......+....++..++..+.+.+..+|-.++..+-..+..-
T Consensus 814 ~~~~l~~l~~~~~s----~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~---- 885 (1549)
T KOG0392|consen 814 LGSLLPRLFFFVRS----IHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAV---- 885 (1549)
T ss_pred hhhhhhHHHHhccc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHh----
Confidence 00 0112222233 6899999999999999887778899999999999999987777766665544433321
Q ss_pred ccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh
Q 002048 546 KSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG 589 (975)
Q Consensus 546 ~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~ 589 (975)
-...+.||.+-++--|+.+++...+...+...++..+++-
T Consensus 886 ----l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip 925 (1549)
T KOG0392|consen 886 ----LMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIP 925 (1549)
T ss_pred ----hcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhc
Confidence 1346789999999999999877654334444555655555
No 131
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.16 E-value=1e+02 Score=37.19 Aligned_cols=167 Identities=11% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHhHHHHHHHhhcCC-CchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHH
Q 002048 508 AFQFFPDLVRFLGAE-SNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMR 586 (975)
Q Consensus 508 ~~~~~~~l~~~L~~~-~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~ 586 (975)
...++|.++.+|++. +.-+...||+||..+++.. |+...-.+..+.-+++..=+.-++-.+ -.|..+.++..
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl-----P~S~a~vV~~~aIPvl~~kL~~IeyiD--vAEQ~LqALE~ 281 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVL-----PRSSAIVVDEHAIPVLLEKLLTIEYID--VAEQSLQALEK 281 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc-----cchhheeecccchHHHHHhhhhhhhhH--HHHHHHHHHHH
Q ss_pred HHh-hccchhhhHHHHHHHHH--HHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhccc
Q 002048 587 VLG-VAEISNEVAAPCISGLT--SILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDV 663 (975)
Q Consensus 587 vi~-~~~~i~p~~~~l~~~L~--~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~~ 663 (975)
+=. -...+. -+..++..|. ..|...++. ..+.+...+.+.+ .++...-+.+. +|++..+|+...
T Consensus 282 iSR~H~~AiL-~AG~l~a~LsylDFFSi~aQR--------~AlaiaaN~Cksi---~sd~f~~v~ea-lPlL~~lLs~~D 348 (1051)
T KOG0168|consen 282 ISRRHPKAIL-QAGALSAVLSYLDFFSIHAQR--------VALAIAANCCKSI---RSDEFHFVMEA-LPLLTPLLSYQD 348 (1051)
T ss_pred HHhhccHHHH-hcccHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhcC---CCccchHHHHH-HHHHHHHHhhcc
Q ss_pred ccchHHHHHHHHHHHHhcCCCCchhHHHHHHh
Q 002048 664 TEFLPYAFQLLAQLIELNRPPLSSNYMQIFNL 695 (975)
Q Consensus 664 ~~~~~~~l~ll~~ll~~~~~~~~~~~~~lf~~ 695 (975)
...++++.--+..++..... -++.+.+++.+
T Consensus 349 ~k~ies~~ic~~ri~d~f~h-~~~kLdql~s~ 379 (1051)
T KOG0168|consen 349 KKPIESVCICLTRIADGFQH-GPDKLDQLCSH 379 (1051)
T ss_pred chhHHHHHHHHHHHHHhccc-ChHHHHHHhch
No 132
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=70.84 E-value=1.6e+02 Score=31.82 Aligned_cols=172 Identities=13% Similarity=0.177 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCchHHHHHHH---hc-cccc-------------------CCChhHH-hHHHHHHHHHH
Q 002048 112 RIQSQLSEALVVVGNHDFPKHWPTLLPELIAN---LK-DAAQ-------------------SNNYVSI-NGILGTANSIF 167 (975)
Q Consensus 112 ~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~---l~-~~~~-------------------~~d~~~~-~~~L~~l~~i~ 167 (975)
+-|+-.+.+-..+...|...+|.|++..|... ++ +... ..=|..+ ..||.+-..||
T Consensus 4 k~kky~~~v~k~L~~Fe~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF 83 (307)
T PF04118_consen 4 KYKKYNAEVEKALKSFESSSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIF 83 (307)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Confidence 34555566666677788888898876655554 45 2110 0011122 23677777787
Q ss_pred HhhhccccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhcccCCCchHHHHh
Q 002048 168 KKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFEDH 247 (975)
Q Consensus 168 k~~~~~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~~~lp~~~~~~ 247 (975)
+... .+.+.+++ .-..|-+|++|....-+ .--. .+++|... ...++..+...
T Consensus 84 ~~ig----~~~L~~dl----~i~~~GLfpl~~~asi~---------------Vkp~----lL~i~e~~-~lpL~~~L~p~ 135 (307)
T PF04118_consen 84 ERIG----PDGLAQDL----PIYSPGLFPLFSYASIQ---------------VKPQ----LLDIYEKY-YLPLGPALRPC 135 (307)
T ss_pred HhcC----HHHHHhhc----HHHHHHHHHHHHHHHHh---------------hHHH----HHHHHHHH-hcCccHHHHHH
Confidence 7663 33333332 34455666666542110 1111 23333322 12344433333
Q ss_pred HHHHHHHHHHHhcccCCcccCCCCcCchHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHhccCCCCcchHHHH
Q 002048 248 MREWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQGYLNDFALAVWTLLGNVSQSSSRDSLAV 327 (975)
Q Consensus 248 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 327 (975)
+..+.. .-.|.+.++ . ..+...+++.+..+....++. .|.+.+|..+.+. .....
T Consensus 136 l~~li~-------slLpGLede---~---sE~~~~~~~ll~~l~~~v~~~------~F~~~lwl~ii~s------p~~Rl 190 (307)
T PF04118_consen 136 LKGLIL-------SLLPGLEDE---G---SEFFDRTLKLLDKLKEAVGDK------YFWQCLWLCIITS------PSRRL 190 (307)
T ss_pred HHHHHH-------HhccccccC---C---chHHHHHHHHHHHHHHhcChh------HHHHHHHHHHhcC------cchhH
Confidence 333222 222323211 1 134445666666665544432 5778888877653 34567
Q ss_pred HHHHHHHhh
Q 002048 328 TAIKFLTNV 336 (975)
Q Consensus 328 ~~l~fl~~~ 336 (975)
.++.|+..-
T Consensus 191 ~al~~l~~~ 199 (307)
T PF04118_consen 191 GALNYLLRR 199 (307)
T ss_pred HHHHHHHHh
Confidence 778887754
No 133
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=69.41 E-value=42 Score=39.46 Aligned_cols=73 Identities=12% Similarity=0.016 Sum_probs=59.2
Q ss_pred cHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhc---cCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHcc
Q 002048 464 DVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRI---QIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQV 540 (975)
Q Consensus 464 ~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~---~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~ 540 (975)
|+.+.+-.|++-...+ ...-+|.|+|..+....+ .++...+..+...+..-+.|..+.||++|..||.++=..
T Consensus 81 DlV~~~f~hlLRg~Es----kdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d 156 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTES----KDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGD 156 (892)
T ss_pred hHHHHHHHHHHhcccC----cchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcC
Confidence 3444455666666665 467899999999999876 467788999999999999999999999999999997643
No 134
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=68.90 E-value=2e+02 Score=32.14 Aligned_cols=87 Identities=16% Similarity=0.188 Sum_probs=43.5
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCC-CCCc-hhHHHHHHHHHHHHhhhcCCCccc-cCcccHH
Q 002048 390 VDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANP-VANW-KDKDCAIYLVVSLATKKAGSTSIS-TDLVDVQ 466 (975)
Q Consensus 390 ~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~-~~~w-~~keaal~~ig~ia~~~~~g~~~~-~~~~~~~ 466 (975)
....+.++.+.+.-.+++|.+...+.+-.++....+-...-. ...| ..-..|+..++.++..... ... ....-+.
T Consensus 109 l~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~--~~lf~~~~~L~ 186 (370)
T PF08506_consen 109 LEKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHH--KNLFENKPHLQ 186 (370)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHH--HTTT-SHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhH--HHHhCCHHHHH
Confidence 467888899999999988877654444444444332221111 1111 1223344444444332210 000 1112356
Q ss_pred HHHHHhcccccC
Q 002048 467 SFFTSVIVPELQ 478 (975)
Q Consensus 467 ~~l~~~v~p~l~ 478 (975)
.++.++|+|.+.
T Consensus 187 ~Iie~VI~Pnl~ 198 (370)
T PF08506_consen 187 QIIEKVIFPNLC 198 (370)
T ss_dssp HHHHHTHHHHHS
T ss_pred HHHHHhccCccC
Confidence 677788888875
No 135
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=68.73 E-value=1.3e+02 Score=32.85 Aligned_cols=128 Identities=13% Similarity=0.265 Sum_probs=72.5
Q ss_pred chhHHHHHHhhcCccccccCCCccchHHHHHHHHccCcc---chhccCchHHHHHHHHHhhcCCCC--cchHHHHHHHHH
Q 002048 686 SSNYMQIFNLLLSPDSWKRSSNVPALVRLLQAFLQKVPR---EIAQEGKLREVLGIFNMLVLSPST--DEQGFYVLNTIV 760 (975)
Q Consensus 686 ~~~~~~lf~~l~~~~l~~~~~~l~~~~~~L~~~i~~~~~---~~~~~~~~~~il~i~~~ll~~~~~--~~~a~~ll~~ii 760 (975)
++.+|.+|..+-.+. .+....+...++..+.+++. +|+.. ..+.+++.+.+++.+.+. ...+.+|++.++
T Consensus 163 ~~~f~~ff~~~~~~~----Fdiasdaf~t~~~llt~hk~~~a~fl~~-n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ell 237 (335)
T PF08569_consen 163 SECFWKFFKYVQLPN----FDIASDAFSTFKELLTRHKKLVAEFLSN-NYDRFFQKYNKLLESSNYVTKRQSLKLLGELL 237 (335)
T ss_dssp SGGGGGHHHHTTSSS----HHHHHHHHHHHHHHHHSSHHHHHHHHHH-THHHHHHHHHHHCT-SSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcCCc----cHhHHHHHHHHHHHHhccHHHHHHHHHH-HHHHHHHHHHHHccCCCeEeehhhHHHHHHHH
Confidence 446666666554321 23344455666666666653 44433 578888899999987654 467899999999
Q ss_pred Hhcch-hhHhhhH--HHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHhChHHHHHHHhhh
Q 002048 761 ESLEY-GVIAQFV--PHIWGVLFTRLQNKRTVKFVKSLLIFMSLFLVKHGPENLVNTMNAV 818 (975)
Q Consensus 761 ~~~~~-~~~~~~l--~~il~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~L~~~ 818 (975)
..=.. .....|+ +.-++.++.-|.+....-....+-++=..++.-..|..+.++|-..
T Consensus 238 ldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~N 298 (335)
T PF08569_consen 238 LDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKN 298 (335)
T ss_dssp HSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHT
T ss_pred HchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHH
Confidence 76321 2234566 6778888888876543323334433333333223455666666443
No 136
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=68.55 E-value=58 Score=31.37 Aligned_cols=148 Identities=15% Similarity=0.223 Sum_probs=79.0
Q ss_pred HHHhHHHHHHHhhcCC-CchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 002048 507 HAFQFFPDLVRFLGAE-SNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIM 585 (975)
Q Consensus 507 ~~~~~~~~l~~~L~~~-~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~ 585 (975)
..+++++.+++.|+.. +..+|..|.+.|..+= .+-||.-.-++.-..- ...........+..
T Consensus 7 ~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilG--------------ALDP~~~k~~~~~~~~--~~~~~~~~~~~~~~- 69 (160)
T PF11865_consen 7 DYPELLDILLNILKTEQSQSIRREALRVLGILG--------------ALDPYKHKSIQKSLDS--KSSENSNDESTDIS- 69 (160)
T ss_pred HhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc--------------ccCcHHHhcccccCCc--cccccccccchhhH-
Confidence 4677888888888865 6899999998888532 3334333321111110 00000111111111
Q ss_pred HHHh-hccchhhhHHH-HHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhccc
Q 002048 586 RVLG-VAEISNEVAAP-CISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDV 663 (975)
Q Consensus 586 ~vi~-~~~~i~p~~~~-l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~~ 663 (975)
-... .......|.+. ++..|..++ ++++-....+.+.+++..+.+++ ...+ ..+.+.++|.+..++.+-.
T Consensus 70 l~~~~~~~~~ee~y~~vvi~~L~~iL----~D~sLs~~h~~vv~ai~~If~~l---~~~c-v~~L~~viP~~l~~i~~~~ 141 (160)
T PF11865_consen 70 LPMMGISPSSEEYYPTVVINALMRIL----RDPSLSSHHTAVVQAIMYIFKSL---GLKC-VPYLPQVIPIFLRVIRTCP 141 (160)
T ss_pred HhhccCCCchHHHHHHHHHHHHHHHH----HhhhhHHHHHHHHHHHHHHHHhc---CcCc-hhHHHHHhHHHHHHHHhCC
Confidence 0111 11112223332 345554444 34443333346777777777665 2233 7788889999999888644
Q ss_pred ccchHHHHHHHHHHHH
Q 002048 664 TEFLPYAFQLLAQLIE 679 (975)
Q Consensus 664 ~~~~~~~l~ll~~ll~ 679 (975)
....+..++-++.++.
T Consensus 142 ~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 142 DSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4667777777776654
No 137
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.27 E-value=3.3e+02 Score=34.54 Aligned_cols=136 Identities=12% Similarity=0.193 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhc
Q 002048 394 RRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVI 473 (975)
Q Consensus 394 R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v 473 (975)
-..-..||..|+..-|+...+.+..++. ++. +++...|.+.+-++|.+-.....+...-...-++..-+..++
T Consensus 292 ~k~v~~fL~elS~~~P~l~~~~l~~lv~-lld------~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l 364 (1251)
T KOG0414|consen 292 PKIVGNFLVELSERVPKLMLRQLTLLVD-LLD------SESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELL 364 (1251)
T ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHH-hcC------CchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHH
Confidence 3445678888888777766655444443 332 467889999998888775444221110000011222222333
Q ss_pred ccccCCCCCCCcchhHhhHHHHHHHhhc--cCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHcc
Q 002048 474 VPELQSPDVNAFPMLKAGALKFFTMFRI--QIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQV 540 (975)
Q Consensus 474 ~p~l~~~~~~~~~~Lr~ra~~~l~~f~~--~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~ 540 (975)
..-+.+ .++++|.+++.+..+... ..+...+.+++..++..|.|.+..||-.|..-+..++..
T Consensus 365 ~erl~D----vsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~ 429 (1251)
T KOG0414|consen 365 RERLLD----VSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDR 429 (1251)
T ss_pred HHHhhc----ccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhc
Confidence 333444 589999999999988543 356778999999999999999999999999988888875
No 138
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=66.98 E-value=2.9e+02 Score=33.27 Aligned_cols=72 Identities=8% Similarity=0.201 Sum_probs=49.9
Q ss_pred chHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh-hccchhhhHHHHH
Q 002048 524 NVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG-VAEISNEVAAPCI 602 (975)
Q Consensus 524 ~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~-~~~~i~p~~~~l~ 602 (975)
-++|...-.++.|++..- .+.+.||+|.+++.+++ +.+-.+....+.-+..++. ++.++.+...++.
T Consensus 711 E~iRsavrft~hRmI~~l---------g~~vlPfipklie~lL~---s~d~kEmvdfl~flsQLihkfk~~~~~ilnqml 778 (980)
T KOG2021|consen 711 ENIRSAVRFTFHRMIPIL---------GNKVLPFIPKLIELLLS---STDLKEMVDFLGFLSQLIHKFKTDCYQILNQML 778 (980)
T ss_pred chhHHHHHHHHHHHHHhc---------chhhhcchHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445665566667777653 45789999999999874 5543355555667777888 8888888777766
Q ss_pred HHHHH
Q 002048 603 SGLTS 607 (975)
Q Consensus 603 ~~L~~ 607 (975)
..|..
T Consensus 779 ppll~ 783 (980)
T KOG2021|consen 779 PPLLN 783 (980)
T ss_pred HHHHH
Confidence 55554
No 139
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=66.15 E-value=35 Score=38.85 Aligned_cols=77 Identities=10% Similarity=0.041 Sum_probs=57.5
Q ss_pred CcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHH
Q 002048 484 AFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMT 563 (975)
Q Consensus 484 ~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~ 563 (975)
.++++|+.....+|-++..-..+... ..+-.++.|+.--||-.|+.|+..++..+ .+.+.|....|..
T Consensus 598 hN~hVR~g~AvaLGiacag~G~~~a~---diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~---------n~~Lnp~v~~I~k 665 (926)
T COG5116 598 HNFHVRAGVAVALGIACAGTGDKVAT---DILEALMYDTNDFVRQSAMIAVGMILMQC---------NPELNPNVKRIIK 665 (926)
T ss_pred cchhhhhhhHHHhhhhhcCCccHHHH---HHHHHHhhCcHHHHHHHHHHHHHHHHhhc---------CcccChhHHHHHH
Confidence 47899999999999987653333333 33444467887789999999999877654 4578899999999
Q ss_pred HHHHhcCCC
Q 002048 564 SLFNAFKFP 572 (975)
Q Consensus 564 ~L~~ll~~~ 572 (975)
++.+++.+-
T Consensus 666 ~f~~vI~~K 674 (926)
T COG5116 666 KFNRVIVDK 674 (926)
T ss_pred HHHHHHhhh
Confidence 988877553
No 140
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=64.22 E-value=50 Score=32.50 Aligned_cols=146 Identities=18% Similarity=0.172 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHHHHH-hhhhhHHHHHHHHHHH-HHHhccCC--------CCCchhHHHHHHHHHHHHhhhcCCCcc---c
Q 002048 393 RRRIACELLKGIATH-YRQHVMETVSVQIQNL-LTSFAANP--------VANWKDKDCAIYLVVSLATKKAGSTSI---S 459 (975)
Q Consensus 393 ~R~~A~~ll~~L~~~-~~~~~~~~l~~~i~~~-l~~~~~~~--------~~~w~~keaal~~ig~ia~~~~~g~~~---~ 459 (975)
+|.+|..+|.++++. .++.++..--.++-+. ++.....+ +.+.|.|-+|+.++..+-++.+.-... .
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 689999999999998 4444433222222211 11111111 235688999999988886554100000 0
Q ss_pred c-CcccHHHH----------HHHhcccccCCCCCCCcchhHhhHHHHHHHhhc-----cCCHhHHHhHHHHHHHhhcCCC
Q 002048 460 T-DLVDVQSF----------FTSVIVPELQSPDVNAFPMLKAGALKFFTMFRI-----QIPKIHAFQFFPDLVRFLGAES 523 (975)
Q Consensus 460 ~-~~~~~~~~----------l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~-----~~~~~~~~~~~~~l~~~L~~~~ 523 (975)
+ ....|.+| +-..++-.++.. .++-+....+++++.... .++++.+..++..+...+.+.|
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E---~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAE---KSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCC
Confidence 0 01122222 112233344442 344556688899888753 4678899999999999999999
Q ss_pred chHHHHHHHHHHHHHccc
Q 002048 524 NVVHSYAASCIEKLLQVK 541 (975)
Q Consensus 524 ~~V~~~Aa~aL~~~~~~~ 541 (975)
..|++.|..++..++...
T Consensus 159 ~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 159 PNVRVAALSCLGALLSVQ 176 (182)
T ss_pred CcHHHHHHHHHHHHHcCC
Confidence 999999999999988763
No 141
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=64.00 E-value=85 Score=36.76 Aligned_cols=84 Identities=15% Similarity=0.203 Sum_probs=69.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhc----CCCh---HHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCC
Q 002048 11 LSQCFLHTLSPSPEPRRAAERSLAEMAD----RPNY---GLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNS 83 (975)
Q Consensus 11 l~~~L~~tls~d~~~r~~AE~~L~~~~~----~p~f---~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~ 83 (975)
|.-+|....||+..+|++.=+-|+++.+ .|.- +..|++.+.+++.+.-+|.++.+|++..+.|
T Consensus 25 L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~R---------- 94 (501)
T PF13001_consen 25 LPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDR---------- 94 (501)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhc----------
Confidence 4556667779999999999999998775 3442 7788999998877889999999999988874
Q ss_pred CCCcCCCCHHHHHHHHHHHHHHHhcCC
Q 002048 84 GPTLAPILDAEKDQIKSLIVGLMLTST 110 (975)
Q Consensus 84 ~~~~~~i~~e~K~~Ir~~ll~~l~~~~ 110 (975)
++.++|..+=-.++.++..-+
T Consensus 95 ------l~~~e~~~llP~ll~~is~~~ 115 (501)
T PF13001_consen 95 ------LDDEERRELLPSLLKGISKKP 115 (501)
T ss_pred ------CCHHHHHHHHHHHHHhhccCc
Confidence 889999999889998886544
No 142
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=63.15 E-value=62 Score=28.74 Aligned_cols=88 Identities=16% Similarity=0.247 Sum_probs=54.4
Q ss_pred HhHHHHHHHhhcCCC--c--hHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 002048 509 FQFFPDLVRFLGAES--N--VVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCI 584 (975)
Q Consensus 509 ~~~~~~l~~~L~~~~--~--~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l 584 (975)
-.++...-+.+.|.+ . .-|..|..|++.++... ...+..+.|+|+..|-..++..+ =....+++-
T Consensus 10 LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~---------g~~i~~a~pQI~acL~saL~~~e--L~~~al~~W 78 (107)
T smart00802 10 LGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLM---------GKHISSALPQIMACLQSALEIPE--LRSLALRCW 78 (107)
T ss_pred HHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHH
Confidence 334444444455542 4 44889999999998853 45788889999999988886543 122445555
Q ss_pred HHHHh-h-ccchhhhHHHHHHHHHH
Q 002048 585 MRVLG-V-AEISNEVAAPCISGLTS 607 (975)
Q Consensus 585 ~~vi~-~-~~~i~p~~~~l~~~L~~ 607 (975)
...+. + .+++.|..++++..+.+
T Consensus 79 ~~~i~~L~~~~l~~ll~~~~~~i~~ 103 (107)
T smart00802 79 HVLIKTLKEEELGPLLDQIFAAILP 103 (107)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 55555 4 44555555555444443
No 143
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=61.74 E-value=57 Score=32.67 Aligned_cols=90 Identities=17% Similarity=0.236 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCcchHHHHH-------
Q 002048 577 NQYIMKCIMRVLG-VAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFE------- 648 (975)
Q Consensus 577 ~~~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~~~~~~l~------- 648 (975)
-+.++..+..++. ++....|+...++.. +.++-.+++ ..++..+-+|+++.++++| |+.+-++.
T Consensus 17 w~~vl~v~s~lf~~lg~~~~~~l~~~L~~----l~~lr~~~~-f~~~~~~e~~lgaAi~amG---pe~vL~~lPLnl~~~ 88 (198)
T PF08161_consen 17 WPEVLNVLSALFEKLGERSSPLLKPILKT----LGDLRESED-FSFRKELEQVLGAAIRAMG---PEQVLSILPLNLDNA 88 (198)
T ss_pred HHHHHHHHHHHHHHHhhhccHHHHHHHHH----HHHHHcCCC-cchHHHHHHHHHHHHHHCC---HHHHHHHCCCCccCC
Confidence 3455566666666 666655554444443 333433433 3455677788888888883 33332221
Q ss_pred -------HhhHHHHHHHHhccc-ccchHHHHHHH
Q 002048 649 -------ASILPSLQIILQNDV-TEFLPYAFQLL 674 (975)
Q Consensus 649 -------~~l~P~i~~il~~~~-~~~~~~~l~ll 674 (975)
.-++|++..-+.+.. ..|.++.+-+.
T Consensus 89 ~~~~~~raWLLPlLr~~i~~~~L~fF~~~~lPla 122 (198)
T PF08161_consen 89 DDSQPGRAWLLPLLRDHIRNASLSFFVEEFLPLA 122 (198)
T ss_pred CcCCcccchhHHHHHHhccCCChHHHHHHHHHHH
Confidence 257888887654433 23445544333
No 144
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=61.58 E-value=3.8e+02 Score=32.78 Aligned_cols=110 Identities=16% Similarity=0.194 Sum_probs=65.8
Q ss_pred chhHhhHHHHHHHhhccCC---HhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHH
Q 002048 486 PMLKAGALKFFTMFRIQIP---KIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLM 562 (975)
Q Consensus 486 ~~Lr~ra~~~l~~f~~~~~---~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il 562 (975)
..+| -|+.++..+++... +-.-..+++.++.+|+..+..+.+-+...|+++.-..+ +++.+. -..++
T Consensus 264 qLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~E-------NK~~m~--~~giV 333 (708)
T PF05804_consen 264 QLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKE-------NKDEMA--ESGIV 333 (708)
T ss_pred HHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-------HHHHHH--HcCCH
Confidence 3444 45566666665331 12346688999999998888888889999998765432 233333 33567
Q ss_pred HHHHHhcCCCCchhhHHHHH-HHHHHHh--hccchhhhHHH--HHHHHHHHH
Q 002048 563 TSLFNAFKFPESEENQYIMK-CIMRVLG--VAEISNEVAAP--CISGLTSIL 609 (975)
Q Consensus 563 ~~L~~ll~~~~~~~~~~l~~-~l~~vi~--~~~~i~p~~~~--l~~~L~~~l 609 (975)
..|.++++.. ++.+.+ ++.-+.+ +..++.+.... ++++|++++
T Consensus 334 ~kL~kLl~s~----~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL 381 (708)
T PF05804_consen 334 EKLLKLLPSE----NEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELL 381 (708)
T ss_pred HHHHHHhcCC----CHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHh
Confidence 7777777653 222333 4433444 56666654433 456666655
No 145
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=61.21 E-value=3.6e+02 Score=32.45 Aligned_cols=75 Identities=12% Similarity=0.116 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhcccc--cchHHHHHHHHHHHHhcCCCCchhHHHHHHhhcC
Q 002048 623 HYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDVT--EFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLS 698 (975)
Q Consensus 623 ~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~~~--~~~~~~l~ll~~ll~~~~~~~~~~~~~lf~~l~~ 698 (975)
...-..+.+++..- ++.-..-+-+.+.+.-++..++..+.. +=...+++++..++=+-..++.+.+..+|-.+..
T Consensus 700 ee~~~al~nfityG-~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi~vag 776 (970)
T COG5656 700 EEVADALDNFITYG-KTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLFISVAG 776 (970)
T ss_pred HHHHHHHHHHHHhC-ccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHHHHHHh
Confidence 33444556666552 211001123344556666666655432 1123477888776666544466667666666554
No 146
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=60.70 E-value=78 Score=31.19 Aligned_cols=24 Identities=33% Similarity=0.275 Sum_probs=20.1
Q ss_pred HhhcCCCchHHHHHHHHHHHHHcc
Q 002048 517 RFLGAESNVVHSYAASCIEKLLQV 540 (975)
Q Consensus 517 ~~L~~~~~~V~~~Aa~aL~~~~~~ 540 (975)
..+.|++..||..|+.++..+++.
T Consensus 47 ~il~Dp~~kvR~aA~~~l~~lL~g 70 (182)
T PF13251_consen 47 CILKDPSPKVRAAAASALAALLEG 70 (182)
T ss_pred HHHcCCchhHHHHHHHHHHHHHHc
Confidence 447789999999999999987764
No 147
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=59.42 E-value=35 Score=28.57 Aligned_cols=60 Identities=15% Similarity=0.187 Sum_probs=34.0
Q ss_pred CCChhhHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHhc---CCC-----hHHHHHHHHHhcCcChHHHH
Q 002048 2 EWNQETLQHLSQCFLHTLSP---SPEPRRAAERSLAEMAD---RPN-----YGLAVLRLVAEQTIDEQIRH 61 (975)
Q Consensus 2 ~~~~~~~~~l~~~L~~tls~---d~~~r~~AE~~L~~~~~---~p~-----f~~~Ll~i~~~~~~~~~vRq 61 (975)
++++....+..++|....+- -.++|++|++....+.. .|+ ....|=+|..+++.|...|.
T Consensus 9 ~d~~e~i~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLeeisnDPNmP~h~RT 79 (93)
T COG1698 9 NDSEEKINQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNNEGESPAVRAATAISILEEISNDPNMPLHART 79 (93)
T ss_pred hhhHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 34444455666666553221 15799999999887764 332 23333344445566666664
No 148
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=59.37 E-value=51 Score=36.33 Aligned_cols=125 Identities=17% Similarity=0.151 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHhh-chhhhhhcccCCCchhhHHHHh----hcccCCCChhhHHHHh
Q 002048 300 GYLNDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNV-STSVHHTLFAGEGVIPQICQNI----VIPNVRLRDEDEELFE 374 (975)
Q Consensus 300 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~fl~~~-~~~~~~~~~~~~~~l~~l~~~l----i~~~l~l~~~d~e~we 374 (975)
+.+|.|++.+.+.+...-.. .-..+...|+...++ ..+... + .+++.+++..+ +-+.++-+.+
T Consensus 210 ~LlPyf~~fI~~~v~~n~~~--nl~~L~~lm~~v~ALl~N~~l~-l---e~Ylh~Lip~vltclv~~~l~~~~~------ 277 (343)
T cd08050 210 QLLPYFVRFIAEGVTVNLDQ--NLALLIYLMRMVRALLDNPNLH-L---EPYLHQLIPSVLTCLVAKQLCSRPP------ 277 (343)
T ss_pred hhhhHHHHHHHHHHHhhhcc--cHHHHHHHHHHHHHHhcCCCCc-h---HHhHHHHHHHHHHHhhhHhhcCCCC------
Confidence 45566666655544321110 224566777777777 444321 1 45555555433 3333332221
Q ss_pred hCHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHH
Q 002048 375 MNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLA 449 (975)
Q Consensus 375 ~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia 449 (975)
..+.|..|.-|++++..+|++|+... +.+...+...+...-.++....-.++||+..++.++
T Consensus 278 ------------~~~h~~LRd~AA~ll~~i~~~f~~~y-~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 278 ------------DDNHWALRDYAARLLAQICRKFSTSY-NTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSALG 339 (343)
T ss_pred ------------CchHHHHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhC
Confidence 23467899999999999999987643 223333333333322344444566899988888764
No 149
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=57.70 E-value=1.2e+02 Score=36.77 Aligned_cols=131 Identities=12% Similarity=0.129 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHhc-CcChHHHHHHHHHHHhhhhcccC-----------CCCCCCCCCCcCCCCH
Q 002048 25 PRRAAERSLAEMADRPNYGLAVLRLVAEQ-TIDEQIRHAAAVNFKNHLRFRWA-----------PASDRNSGPTLAPILD 92 (975)
Q Consensus 25 ~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~-~~~~~vRq~Aai~lKn~I~~~W~-----------~~~~~~~~~~~~~i~~ 92 (975)
.+.+.-.-+.++..-..+...+.+++.+- +.+..+|.+-=.|+.++=+. |. .+.++ -++
T Consensus 36 kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~-~P~~~lLavNti~kDl~d--------~N~ 106 (757)
T COG5096 36 KIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKL-KPELALLAVNTIQKDLQD--------PNE 106 (757)
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhhccC--------CCH
Confidence 44444455566665444555555555432 35677787777777766442 32 11111 111
Q ss_pred HHH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCCCCCCch-HHHHHH-HhcccccCCChh
Q 002048 93 AEK----------------DQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTL-LPELIA-NLKDAAQSNNYV 154 (975)
Q Consensus 93 e~K----------------~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P~~Wp~L-l~~l~~-~l~~~~~~~d~~ 154 (975)
..| ..+=..+.+++-++...||+..+.||.++-+.| |+-.+++ +..+.. ++... ||.
T Consensus 107 ~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld-~~l~~~~g~~~~l~~l~~D~----dP~ 181 (757)
T COG5096 107 EIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD-KDLYHELGLIDILKELVADS----DPI 181 (757)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC-HhhhhcccHHHHHHHHhhCC----Cch
Confidence 111 112222333444445679999999999999877 3445555 444444 44455 999
Q ss_pred HHhHHHHHHHHHHHh
Q 002048 155 SINGILGTANSIFKK 169 (975)
Q Consensus 155 ~~~~~L~~l~~i~k~ 169 (975)
.+..|+..|+.+..+
T Consensus 182 Vi~nAl~sl~~i~~e 196 (757)
T COG5096 182 VIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHHhchh
Confidence 999999999999764
No 150
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=57.55 E-value=1.6e+02 Score=34.78 Aligned_cols=136 Identities=15% Similarity=0.196 Sum_probs=85.2
Q ss_pred cchhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhh-cCC-Cc-cccCcccH
Q 002048 389 DVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKK-AGS-TS-ISTDLVDV 465 (975)
Q Consensus 389 d~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~-~~g-~~-~~~~~~~~ 465 (975)
|..-||.. ..|+..|.+.-|..++... +.+...|. ++.+..|-+.+-+.+.+.... ++| +. +.+. .+
T Consensus 275 d~~Gpk~i-slFl~kls~l~p~i~lrq~-~~~~~LLd------ses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~--~~ 344 (1128)
T COG5098 275 DLSGPKDI-SLFLNKLSELSPGIMLRQY-EHFDELLD------SESFTLRCCFLEICANLVEHFKKDGQMVEHYKQ--KL 344 (1128)
T ss_pred cccChHHH-HHHHHHHhhcCchHHHHHH-HHHHHHhc------ccchhHHHHHHHHHHHHHHHHhcchhhHhhHHH--HH
Confidence 34444543 4567777766666554432 33334443 456778888888888776655 333 11 0000 01
Q ss_pred HHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhc--cCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHc
Q 002048 466 QSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRI--QIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQ 539 (975)
Q Consensus 466 ~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~--~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~ 539 (975)
.. +...+.-.|.+ .+|+.|..|+..+....+ ...+....++...+..+|+|.+.+||--|..-+..++.
T Consensus 345 ~~-Lv~ll~ERl~D----~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 345 ND-LVGLLVERLSD----TYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred HH-HHHHHHHHhhc----cchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 11 22223333454 589999999999988643 33456788999999999999999999999887777654
No 151
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=57.38 E-value=5e+02 Score=32.92 Aligned_cols=73 Identities=16% Similarity=0.246 Sum_probs=54.4
Q ss_pred HHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHh-HHHHHHHhhcCCCchHHHHHHHHHHHHHccc
Q 002048 465 VQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQ-FFPDLVRFLGAESNVVHSYAASCIEKLLQVK 541 (975)
Q Consensus 465 ~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~-~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~ 541 (975)
+..+|..+.+.-..+ ..|-+|+-|+.-+|-|....|.-.+.. .+..+-=.|+|.+--||.....||..+....
T Consensus 284 i~~if~sVFVHRYRD----V~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~ 357 (1048)
T KOG2011|consen 284 INDIFDSVFVHRYRD----VDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKD 357 (1048)
T ss_pred HHHHhhheeeeeccc----CchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhcc
Confidence 455566666666655 478999999999999998776555544 3344444578899999999999999988763
No 152
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=56.38 E-value=1.5e+02 Score=31.77 Aligned_cols=152 Identities=13% Similarity=0.156 Sum_probs=77.7
Q ss_pred HHHHHHHhhcC-CCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh
Q 002048 511 FFPDLVRFLGA-ESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG 589 (975)
Q Consensus 511 ~~~~l~~~L~~-~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~ 589 (975)
++|-.+..|.. ..-..+..|++||.++.+-.... .+-.+....-+ .+.++|...+....+..+.++..+..
T Consensus 115 vVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~Q-----TkvVvd~~AVP---lfiqlL~s~~~~V~eQavWALGNiAG 186 (526)
T COG5064 115 VVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQ-----TKVVVDAGAVP---LFIQLLSSTEDDVREQAVWALGNIAG 186 (526)
T ss_pred ccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccc-----eEEEEeCCchH---HHHHHHcCchHHHHHHHHHHhccccC
Confidence 44555666643 35566789999999987654321 12222222222 23344456655566777777766644
Q ss_pred hccchhhhHHH--HHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhh-cCcchHHHHHHhhHHHHHHHHhcccccc
Q 002048 590 VAEISNEVAAP--CISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQ-RDPSLISAFEASILPSLQIILQNDVTEF 666 (975)
Q Consensus 590 ~~~~i~p~~~~--l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~-~~~~~~~~l~~~l~P~i~~il~~~~~~~ 666 (975)
=++....|..+ .++.+..++. .+. +. ..+++..+-.++.+|. .+|..--+-....+|++...+.....+.
T Consensus 187 DS~~~RD~vL~~galeplL~ll~---ss~--~~--ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~ev 259 (526)
T COG5064 187 DSEGCRDYVLQCGALEPLLGLLL---SSA--IH--ISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEV 259 (526)
T ss_pred CchhHHHHHHhcCchHHHHHHHH---hcc--ch--HHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHH
Confidence 22333334332 2344444442 221 11 1455544444444542 3555555566777888888776554455
Q ss_pred hHHHHHHHHHH
Q 002048 667 LPYAFQLLAQL 677 (975)
Q Consensus 667 ~~~~l~ll~~l 677 (975)
+-+++=-++.+
T Consensus 260 lvDA~WAiSYl 270 (526)
T COG5064 260 LVDACWAISYL 270 (526)
T ss_pred HHHHHHHHHHh
Confidence 54444333333
No 153
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=56.07 E-value=15 Score=25.44 Aligned_cols=28 Identities=32% Similarity=0.329 Sum_probs=24.5
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 002048 511 FFPDLVRFLGAESNVVHSYAASCIEKLL 538 (975)
Q Consensus 511 ~~~~l~~~L~~~~~~V~~~Aa~aL~~~~ 538 (975)
.++.++.+|++++..++..|+.||.++.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 6788899999889999999999999864
No 154
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=54.84 E-value=1e+02 Score=36.56 Aligned_cols=76 Identities=11% Similarity=0.045 Sum_probs=48.3
Q ss_pred CcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHH
Q 002048 484 AFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMT 563 (975)
Q Consensus 484 ~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~ 563 (975)
-+|++|.-+...+|-++..-. ....+..+-....|+.--||-.|+.|+.-+..-. .+.+-|....+-+
T Consensus 601 ~N~HVRyGaA~ALGIaCAGtG---~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~---------t~~~~pkv~~frk 668 (929)
T KOG2062|consen 601 YNPHVRYGAAMALGIACAGTG---LKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQ---------TEQLCPKVNGFRK 668 (929)
T ss_pred cChhhhhhHHHHHhhhhcCCC---cHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhc---------ccccCchHHHHHH
Confidence 367888888888887765422 2233333434455676677878888877654432 3466777777777
Q ss_pred HHHHhcCC
Q 002048 564 SLFNAFKF 571 (975)
Q Consensus 564 ~L~~ll~~ 571 (975)
.+.+.+.+
T Consensus 669 ~l~kvI~d 676 (929)
T KOG2062|consen 669 QLEKVIND 676 (929)
T ss_pred HHHHHhhh
Confidence 77777655
No 155
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=53.24 E-value=51 Score=28.31 Aligned_cols=63 Identities=17% Similarity=0.210 Sum_probs=51.5
Q ss_pred ccccCCCCCCCcchhHhhHHHHHHHhhc-cC-CHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHcc
Q 002048 474 VPELQSPDVNAFPMLKAGALKFFTMFRI-QI-PKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQV 540 (975)
Q Consensus 474 ~p~l~~~~~~~~~~Lr~ra~~~l~~f~~-~~-~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~ 540 (975)
+.++.+ +.+-+|+.++..+.+... .- +......++..++..|+|++.=|.+.|..++..+++.
T Consensus 9 l~~L~d----p~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 9 LSDLND----PLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred HHHccC----CCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 445666 356799999999998754 33 5567889999999999999999999999999988875
No 156
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=52.40 E-value=37 Score=24.81 Aligned_cols=36 Identities=11% Similarity=0.248 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccc
Q 002048 93 AEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHD 128 (975)
Q Consensus 93 e~K~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D 128 (975)
.+.+++|+.+++.|.+.+...|.++..+|+.+.+.+
T Consensus 3 ~~~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~fs 38 (46)
T PF01465_consen 3 INLEYLKNVLLQFLESREPSEREQLLPVIATLLKFS 38 (46)
T ss_dssp HHHHHHHHHHHHHHTTSS---HHHHHHHHHHHTT--
T ss_pred hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHCCC
Confidence 467899999999999888788999999999998764
No 157
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=52.14 E-value=2.4e+02 Score=34.96 Aligned_cols=182 Identities=10% Similarity=0.065 Sum_probs=108.0
Q ss_pred CCcchhhhHHHHHHHHHHHHHh--hhh-hHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcc
Q 002048 387 GSDVDTRRRIACELLKGIATHY--RQH-VMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLV 463 (975)
Q Consensus 387 ~~d~~s~R~~A~~ll~~L~~~~--~~~-~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~ 463 (975)
..+|-.+..+.+.++..+-+.. ... ....+.-.+. ... . ..|....=-+...+..++..+..++
T Consensus 264 s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~k-i~~---k--DaN~~v~~~aa~~l~~ia~~lr~~~------- 330 (815)
T KOG1820|consen 264 SKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLK-IRL---K--DANINVVMLAAQILELIAKKLRPLF------- 330 (815)
T ss_pred ccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHH-Hhc---c--CcchhHHHHHHHHHHHHHHhcchhh-------
Confidence 3455556666666666665544 111 1111211111 111 1 2233333334455666766653332
Q ss_pred cHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccC
Q 002048 464 DVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDE 543 (975)
Q Consensus 464 ~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~ 543 (975)
..+ ...+.|.+-..-.+..+.+|..+..++-.|.+. -.+..+.+.++.++.+..+-++......+.+.+...+
T Consensus 331 --~~~-~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns---~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~- 403 (815)
T KOG1820|consen 331 --RKY-AKNVFPSLLDRLKEKKSELRDALLKALDAILNS---TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLG- 403 (815)
T ss_pred --HHH-HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcC-
Confidence 222 223344443322235789999999999888874 4578889999999999999999888888887766432
Q ss_pred CCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh-hccch
Q 002048 544 GGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG-VAEIS 594 (975)
Q Consensus 544 ~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~-~~~~i 594 (975)
+.....+-+..++..+....++..+.......+++..++. ++++.
T Consensus 404 ------~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~ 449 (815)
T KOG1820|consen 404 ------PKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEV 449 (815)
T ss_pred ------CcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHH
Confidence 1344566677888888888877766555555566666655 56553
No 158
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=51.97 E-value=59 Score=39.54 Aligned_cols=140 Identities=16% Similarity=0.184 Sum_probs=88.6
Q ss_pred HHHHhhHHHHHHHHhcccccchHHHHHHHHHHHHhcCC-CCchhHHHHHHhhcCccccccCCCccchHHHHHHHHccCcc
Q 002048 646 AFEASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRP-PLSSNYMQIFNLLLSPDSWKRSSNVPALVRLLQAFLQKVPR 724 (975)
Q Consensus 646 ~l~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~~~~-~~~~~~~~lf~~l~~~~l~~~~~~l~~~~~~L~~~i~~~~~ 724 (975)
++-..++|.+..-+...-..--+.-+..++.++.+-|. .+-|.+-.++|.++......+...--...+++.-.+...+.
T Consensus 863 RfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 863 RFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred HHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc
Confidence 34455667766655532223345567788888887764 36678888888888742111222223456667666666554
Q ss_pred chhccCchHHHHHHHHHhhcCCCC-----cchHHHHHHHHHHhcchhhHhhhHHHHHHHHHHHhhcCc
Q 002048 725 EIAQEGKLREVLGIFNMLVLSPST-----DEQGFYVLNTIVESLEYGVIAQFVPHIWGVLFTRLQNKR 787 (975)
Q Consensus 725 ~~~~~~~~~~il~i~~~ll~~~~~-----~~~a~~ll~~ii~~~~~~~~~~~l~~il~~~l~~L~~~~ 787 (975)
-.- .++..++-.+-.+=.+.++ +..|.+.++.+.+.+|...+.+|-+.+++++..-|...|
T Consensus 943 L~t--~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkK 1008 (1030)
T KOG1967|consen 943 LQT--EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKK 1008 (1030)
T ss_pred cch--HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHH
Confidence 332 2455555444333222222 245889999999988988889999999999998888765
No 159
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.95 E-value=1.9e+02 Score=31.45 Aligned_cols=187 Identities=14% Similarity=0.103 Sum_probs=0.0
Q ss_pred HhcccccCCCCCCCcchhHhhHHHHHHHhh-----ccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCC
Q 002048 471 SVIVPELQSPDVNAFPMLKAGALKFFTMFR-----IQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGG 545 (975)
Q Consensus 471 ~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~-----~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~ 545 (975)
.++...+.+ ..+=+|.+|+..+|... ...-.+.=+.+++.++.++++++..|+..|+.||+.+....++
T Consensus 211 pvLVsll~s----~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Y-- 284 (550)
T KOG4224|consen 211 PVLVSLLKS----GDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEY-- 284 (550)
T ss_pred hhhhhhhcc----CChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchh--
Q ss_pred ccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHH--Hh-hccchhhhHHH-HHHHHHHHHHHHHhCCCCCch
Q 002048 546 KSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRV--LG-VAEISNEVAAP-CISGLTSILNEVCKNPKSPIF 621 (975)
Q Consensus 546 ~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~v--i~-~~~~i~p~~~~-l~~~L~~~l~~~~~~~~~~~~ 621 (975)
...=.-..-+..++++++.. -...++..+.-+ +. ..-.-.+.++. .+..|+.++ .--++...
T Consensus 285 -------q~eiv~ag~lP~lv~Llqs~---~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL----~~~dnEei 350 (550)
T KOG4224|consen 285 -------QREIVEAGSLPLLVELLQSP---MGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLL----RAGDNEEI 350 (550)
T ss_pred -------hhHHHhcCCchHHHHHHhCc---chhHHHHHHHHHhhcccccCcccceecccchhHHHHHH----hcCCchhh
Q ss_pred hHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhcccccchHHHHHHHHHHHHh
Q 002048 622 NHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIEL 680 (975)
Q Consensus 622 ~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~ 680 (975)
.....+++..+..+ .......-.+.-.+|.+...+-....+|-++.--.++.+-.+
T Consensus 351 qchAvstLrnLAas---se~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~ 406 (550)
T KOG4224|consen 351 QCHAVSTLRNLAAS---SEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN 406 (550)
T ss_pred hhhHHHHHHHHhhh---hhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc
No 160
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=51.67 E-value=2.7e+02 Score=33.99 Aligned_cols=33 Identities=15% Similarity=0.093 Sum_probs=25.4
Q ss_pred HHhHHHHHHHhhcCCCchHHHHHHHHHHHHHcc
Q 002048 508 AFQFFPDLVRFLGAESNVVHSYAASCIEKLLQV 540 (975)
Q Consensus 508 ~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~ 540 (975)
-..+++.+...+.+++..++..|...|.++..+
T Consensus 329 ~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd 361 (708)
T PF05804_consen 329 ESGIVEKLLKLLPSENEDLVNVALRLLFNLSFD 361 (708)
T ss_pred HcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcC
Confidence 345888899999988877887888887776544
No 161
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=51.20 E-value=2.6e+02 Score=30.48 Aligned_cols=112 Identities=12% Similarity=0.110 Sum_probs=59.7
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCch-hhHHHHHHHHHHHh-h
Q 002048 513 PDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESE-ENQYIMKCIMRVLG-V 590 (975)
Q Consensus 513 ~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~-~~~~l~~~l~~vi~-~ 590 (975)
..++..+++++.-||..|++.|...+.... ...+.+-. ...++.|+.++...+.. ....++.+++..|. .
T Consensus 127 ~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP------~~Qe~v~E--~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~ 198 (342)
T KOG2160|consen 127 VPLLGYLENSDAELRELAARVIGTAVQNNP------KSQEQVIE--LGALSKLLKILSSDDPNTVRTKALFAISSLIRNN 198 (342)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHhcCH------HHHHHHHH--cccHHHHHHHHccCCCchHHHHHHHHHHHHHhcC
Confidence 444558888899999999999998777531 11112111 11456666666533222 33455667777766 4
Q ss_pred ccchhhhHHH-HHHHHHHHHHHHHhCC-CCCchhHHHHHHHHHHHHHh
Q 002048 591 AEISNEVAAP-CISGLTSILNEVCKNP-KSPIFNHYLFESVAVLVRRA 636 (975)
Q Consensus 591 ~~~i~p~~~~-l~~~L~~~l~~~~~~~-~~~~~~~~~~e~l~~li~~~ 636 (975)
......|... =.+. +..+.+++ .+..+.-.++..++.++...
T Consensus 199 ~~g~~~fl~~~G~~~----L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~ 242 (342)
T KOG2160|consen 199 KPGQDEFLKLNGYQV----LRDVLQSNNTSVKLKRKALFLLSLLLQED 242 (342)
T ss_pred cHHHHHHHhcCCHHH----HHHHHHcCCcchHHHHHHHHHHHHHHHhh
Confidence 4443322110 0122 22233333 34556666777777776653
No 162
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.75 E-value=4.3e+02 Score=30.18 Aligned_cols=116 Identities=10% Similarity=0.045 Sum_probs=79.4
Q ss_pred hHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCC-CchhhHHHHHHH
Q 002048 506 IHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFP-ESEENQYIMKCI 584 (975)
Q Consensus 506 ~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~-~~~~~~~l~~~l 584 (975)
..+..++..+.+-..||+..+|-.||+.|.+..+. .++...-|.+.+++.+..-+-+. .++..-..|.++
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~---------~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~L 324 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASG---------APDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCL 324 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhcc---------CcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 56889999999999999999999999999987764 35667777777777776555333 222222456777
Q ss_pred HHHHh--hccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHH
Q 002048 585 MRVLG--VAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRR 635 (975)
Q Consensus 585 ~~vi~--~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~ 635 (975)
..+.. -+.++.+|...+.-.+.+.|.. .++.++...+...+.|...
T Consensus 325 t~v~~~~~~~~l~~~~l~ialrlR~l~~s-----e~~~~R~aa~~Lfg~L~~l 372 (533)
T KOG2032|consen 325 TMVLEKASNDDLESYLLNIALRLRTLFDS-----EDDKMRAAAFVLFGALAKL 372 (533)
T ss_pred HHHHHhhhhcchhhhchhHHHHHHHHHHh-----cChhhhhhHHHHHHHHHHH
Confidence 77777 5778888988887777776632 3344544445555555444
No 163
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=49.39 E-value=5e+02 Score=30.56 Aligned_cols=301 Identities=11% Similarity=0.108 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHhhchhhhhhcccCCCchhhHHH
Q 002048 277 DGLRAAVCENISLYMKMNEEEFQGYLNDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNVSTSVHHTLFAGEGVIPQICQ 356 (975)
Q Consensus 277 ~~~k~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~~~~l~~l~~ 356 (975)
.+.|+-+.+++.+|+..||+ ....-+...+.++.. ....+..+++.-|-.+.+ . ++.++..++.
T Consensus 36 ~k~K~Laaq~I~kffk~FP~----l~~~Ai~a~~DLcED-----ed~~iR~~aik~lp~~ck----~---~~~~v~kvaD 99 (556)
T PF05918_consen 36 PKEKRLAAQFIPKFFKHFPD----LQEEAINAQLDLCED-----EDVQIRKQAIKGLPQLCK----D---NPEHVSKVAD 99 (556)
T ss_dssp HHHHHHHHHHHHHHHCC-GG----GHHHHHHHHHHHHT------SSHHHHHHHHHHGGGG------T-----T-HHHHHH
T ss_pred HHHHHHHHHHHHHHHhhChh----hHHHHHHHHHHHHhc-----ccHHHHHHHHHhHHHHHH----h---HHHHHhHHHH
Confidence 57888888889888877653 334444556666532 234577888877766511 1 1456666665
Q ss_pred HhhcccCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCch
Q 002048 357 NIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWK 436 (975)
Q Consensus 357 ~li~~~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~ 436 (975)
.++ .+++ .|||.| +.+..+-|.+|.+.-++.++..++..+... ++.+-.
T Consensus 100 vL~-QlL~---------tdd~~E--------------~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-------~~~de~ 148 (556)
T PF05918_consen 100 VLV-QLLQ---------TDDPVE--------------LDAVKNSLMSLLKQDPKGTLTGLFSQIESS-------KSGDEQ 148 (556)
T ss_dssp HHH-HHTT------------HHH--------------HHHHHHHHHHHHHH-HHHHHHHHHHHHH----------HS-HH
T ss_pred HHH-HHHh---------cccHHH--------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-------ccCchH
Confidence 333 4444 344444 234445566666666666666555544421 112334
Q ss_pred hHHHHHHHHHHHHhhh---cCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHH
Q 002048 437 DKDCAIYLVVSLATKK---AGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFP 513 (975)
Q Consensus 437 ~keaal~~ig~ia~~~---~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~ 513 (975)
.||=++..+ +.++ ...+ .++.-+++.|+...+.--|++-.. ..--+-...+..+..|...-+.+-..+++.
T Consensus 149 ~Re~~lkFl---~~kl~~l~~~~--~~p~~E~e~~i~~~ikkvL~DVTa-eEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ 222 (556)
T PF05918_consen 149 VRERALKFL---REKLKPLKPEL--LTPQKEMEEFIVDEIKKVLQDVTA-EEFELFMSLLKSLKIYGGKQTIEGRQELVD 222 (556)
T ss_dssp HHHHHHHHH---HHHGGGS-TTT--S---HHHHHHHHHHHHHHCTT--H-HHHHHHHHHHHTSGG---GSSHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHhhCcHHH--hhchHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHhCccccccCChHHHHHHHH
Confidence 566555433 3333 1211 122346888888887777765211 111111122222222333345666777777
Q ss_pred HHHHhh--cCC----CchHHHHHHHHHHHHHccccCCCcccccc-ccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHH
Q 002048 514 DLVRFL--GAE----SNVVHSYAASCIEKLLQVKDEGGKSRYNS-ADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMR 586 (975)
Q Consensus 514 ~l~~~L--~~~----~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~-~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~ 586 (975)
.+..-. ..+ +.-.--.-..|+..-+.. |++ -.-.+++.=+.+.++.-+++.++...-.+++++..
T Consensus 223 ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~--------fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE 294 (556)
T PF05918_consen 223 IIEEQADLDQPFDPSDPESIDRLISCLRQALPF--------FSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAE 294 (556)
T ss_dssp HHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG---------BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHH
T ss_pred HHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHH--------hcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHH
Confidence 777433 321 111000111122221111 111 22345666677777766666544333356666666
Q ss_pred HHh-hccchhhhHHHHHHHHHHHHHHHHhC-CCCCchhHHHHHHHHHHHHHhhhcCc
Q 002048 587 VLG-VAEISNEVAAPCISGLTSILNEVCKN-PKSPIFNHYLFESVAVLVRRACQRDP 641 (975)
Q Consensus 587 vi~-~~~~i~p~~~~l~~~L~~~l~~~~~~-~~~~~~~~~~~e~l~~li~~~~~~~~ 641 (975)
+.. +++.- +.++++.+...+....-. ...|.++....||+--..+.++...|
T Consensus 295 ~s~~~~~~d---~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p 348 (556)
T PF05918_consen 295 LSPFCGAQD---ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSP 348 (556)
T ss_dssp HHTT----T---HHHHHHHHHHHHHTTS----------HHHHHHHHHHHHHHHTT-T
T ss_pred HcCCCCccc---HHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCc
Confidence 655 43221 233344443333222211 12455666667766555555543333
No 164
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=49.27 E-value=1.7e+02 Score=35.89 Aligned_cols=81 Identities=14% Similarity=0.255 Sum_probs=65.8
Q ss_pred CcchhHhhHHHHHHHhh---ccCCHhHHHhHHHHHHHhhcCCC---chHHHHHHHHHHHHHccccCCCccccccccccch
Q 002048 484 AFPMLKAGALKFFTMFR---IQIPKIHAFQFFPDLVRFLGAES---NVVHSYAASCIEKLLQVKDEGGKSRYNSADITPY 557 (975)
Q Consensus 484 ~~~~Lr~ra~~~l~~f~---~~~~~~~~~~~~~~l~~~L~~~~---~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~ 557 (975)
+.+.+|..+..++.-+- ..+..+++..++|.++..=.|++ .+||..|-.+|..+.+. .+...+.||
T Consensus 921 ~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~--------~P~~~l~~f 992 (1030)
T KOG1967|consen 921 PDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRR--------LPTKSLLSF 992 (1030)
T ss_pred CccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhcc--------CCCcccccc
Confidence 35677777777777654 45667999999999999877765 89999999999987774 346789999
Q ss_pred HHHHHHHHHHhcCCC
Q 002048 558 LSVLMTSLFNAFKFP 572 (975)
Q Consensus 558 l~~il~~L~~ll~~~ 572 (975)
-+.+++.|.+.+++.
T Consensus 993 r~~Vl~al~k~LdDk 1007 (1030)
T KOG1967|consen 993 RPLVLRALIKILDDK 1007 (1030)
T ss_pred cHHHHHHhhhccCcH
Confidence 999999999998775
No 165
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=48.90 E-value=2e+02 Score=31.27 Aligned_cols=138 Identities=17% Similarity=0.165 Sum_probs=81.1
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHH
Q 002048 390 VDTRRRIACELLKGIATHYRQHVMETVS-VQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSF 468 (975)
Q Consensus 390 ~~s~R~~A~~ll~~L~~~~~~~~~~~l~-~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~ 468 (975)
..+.|..|..++.+.+.+.|..-..++- .+...++..... +.+-..|-.||+|++++-..-..|. ..|
T Consensus 137 ~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~--~~~~~~r~kaL~AissLIRn~~~g~---------~~f 205 (342)
T KOG2160|consen 137 DAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSS--DDPNTVRTKALFAISSLIRNNKPGQ---------DEF 205 (342)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHcc--CCCchHHHHHHHHHHHHHhcCcHHH---------HHH
Confidence 4678999999999999988753322211 133344443322 2344667778999988754332232 222
Q ss_pred HH----HhcccccCCCCCCCcchhHhhHHHHHHHhhc-cCC--HhHHHhHHHHHHHhhcCC-CchHHHHHHHHHHHHHcc
Q 002048 469 FT----SVIVPELQSPDVNAFPMLKAGALKFFTMFRI-QIP--KIHAFQFFPDLVRFLGAE-SNVVHSYAASCIEKLLQV 540 (975)
Q Consensus 469 l~----~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~-~~~--~~~~~~~~~~l~~~L~~~-~~~V~~~Aa~aL~~~~~~ 540 (975)
+. ..+.+-+++++ ....+++++..+++.... ... ...-...++.++..+..+ +..++-.|..++..++..
T Consensus 206 l~~~G~~~L~~vl~~~~--~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 206 LKLNGYQVLRDVLQSNN--TSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HhcCCHHHHHHHHHcCC--cchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 21 34556667653 468999999999998753 221 123333444444444433 677777777776665554
No 166
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=48.72 E-value=90 Score=35.32 Aligned_cols=77 Identities=12% Similarity=0.017 Sum_probs=52.9
Q ss_pred CCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhH
Q 002048 432 VANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQF 511 (975)
Q Consensus 432 ~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~ 511 (975)
+.+.+.+.+++.+++.. +. +-. ..+.+.+++ ..+.+|+.|+..+|..... ..
T Consensus 128 ~~~p~vR~aal~al~~r------~~-------~~~----~~L~~~L~d----~d~~Vra~A~raLG~l~~~-------~a 179 (410)
T TIGR02270 128 ASEPPGRAIGLAALGAH------RH-------DPG----PALEAALTH----EDALVRAAALRALGELPRR-------LS 179 (410)
T ss_pred CCChHHHHHHHHHHHhh------cc-------ChH----HHHHHHhcC----CCHHHHHHHHHHHHhhccc-------cc
Confidence 45667888887666642 10 101 234455655 5899999999999998753 22
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHH
Q 002048 512 FPDLVRFLGAESNVVHSYAASCIEK 536 (975)
Q Consensus 512 ~~~l~~~L~~~~~~V~~~Aa~aL~~ 536 (975)
.+.+...++|.+..||..|+.++..
T Consensus 180 ~~~L~~al~d~~~~VR~aA~~al~~ 204 (410)
T TIGR02270 180 ESTLRLYLRDSDPEVRFAALEAGLL 204 (410)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3345566999999999999998864
No 167
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=48.36 E-value=4.9e+02 Score=30.17 Aligned_cols=86 Identities=14% Similarity=-0.017 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhhccc---CCCchHHHHhHHHHHHHHHHHhcccCCcccCCCCcCchHHHHHHHHHHHHHHHHHHhHHHH
Q 002048 222 FESQRLCCRIFYSLNF---QELPEFFEDHMREWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEF 298 (975)
Q Consensus 222 ~~~l~~~lk~~~~~~~---~~lp~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~f 298 (975)
++.+..++++.+++.. ..+-.++...++..+.+.+.=--...| . ....|.+|.-+.+.+..++.+|+..+
T Consensus 261 L~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p---~----~dnhwaLRDfAA~ll~~i~k~f~~~y 333 (576)
T KOG2549|consen 261 LELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRP---E----LDNHWALRDFAARLLAQICKNFSTLY 333 (576)
T ss_pred HHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCc---c----ccchHHHHHHHHHHHHHHHHhhhhHH
Confidence 3455567777777731 222233334444444333221001111 1 11238899999999999998888777
Q ss_pred HhhHHHHHHHHHHHHh
Q 002048 299 QGYLNDFALAVWTLLG 314 (975)
Q Consensus 299 ~~~~~~~~~~~~~~l~ 314 (975)
...-+.++......+.
T Consensus 334 ~~L~~Rit~tl~k~l~ 349 (576)
T KOG2549|consen 334 NNLQPRITRTLSKALL 349 (576)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6655555555555443
No 168
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=48.23 E-value=3.6e+02 Score=31.94 Aligned_cols=181 Identities=18% Similarity=0.295 Sum_probs=90.7
Q ss_pred hHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCC--ch-hhHHHHH
Q 002048 506 IHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPE--SE-ENQYIMK 582 (975)
Q Consensus 506 ~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~--~~-~~~~l~~ 582 (975)
..+..++..+++.=+..+..+|+.|-.+|..++... ..+.+.|.+....-..+.-.+-+. .. ...++..
T Consensus 278 k~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~--------~~~~l~~vlk~mY~afv~nsk~~~~~tl~~i~Fl~~ 349 (661)
T KOG2256|consen 278 KLLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKF--------KSTCLDPVLKTMYLAFVRNSKFVTVNTLPLINFLQN 349 (661)
T ss_pred HHHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHhCCCCCCcccchhHHHHH
Confidence 456677777777767678889999998888777542 345555555555555554332222 11 1223444
Q ss_pred HHHHHHhhccchh-hhHHHHHHHHHHHHHHHH--hCCCC--CchhHHHHHHHHHHHHHhh-hcCcchHHHHHHhhHHHHH
Q 002048 583 CIMRVLGVAEISN-EVAAPCISGLTSILNEVC--KNPKS--PIFNHYLFESVAVLVRRAC-QRDPSLISAFEASILPSLQ 656 (975)
Q Consensus 583 ~l~~vi~~~~~i~-p~~~~l~~~L~~~l~~~~--~~~~~--~~~~~~~~e~l~~li~~~~-~~~~~~~~~l~~~l~P~i~ 656 (975)
++..++..+.+.. .++-.-+..|.-.+.... ++.++ +.++.....|+.-=++.+| .+ +.-..+.+.++|+++
T Consensus 350 slvEL~~ld~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~--~~~s~lq~LvYpLvQ 427 (661)
T KOG2256|consen 350 SLVELLGLDLQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFAN--GSASQLQPLVYPLVQ 427 (661)
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccHhhhhhhhhHHHH
Confidence 4444433221111 011112333333333222 22221 2344444555554444443 22 233567788888888
Q ss_pred HHHhc----ccccchHHHHHHHHHHHHhcC---C--CCchhHHHHHHhh
Q 002048 657 IILQN----DVTEFLPYAFQLLAQLIELNR---P--PLSSNYMQIFNLL 696 (975)
Q Consensus 657 ~il~~----~~~~~~~~~l~ll~~ll~~~~---~--~~~~~~~~lf~~l 696 (975)
.++.- ...-|+|.=+-++..++.-+. . |+.|.+..+++..
T Consensus 428 vi~GvirLipT~qy~PLRlhcir~Li~Ls~ssg~fIPi~~ll~Eml~~~ 476 (661)
T KOG2256|consen 428 VILGVIRLIPTPQYYPLRLHCIRSLISLSRSSGTFIPLSPLLVEMLKSV 476 (661)
T ss_pred HHHHHhhhcCcccchhHHHHHHHHHHHHHhhcCceeecHHHHHHHHHHh
Confidence 76531 223577765555555554433 2 4555555555544
No 169
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=46.18 E-value=1.4e+02 Score=38.00 Aligned_cols=86 Identities=12% Similarity=0.051 Sum_probs=52.7
Q ss_pred HHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHH-HHH
Q 002048 508 AFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKC-IMR 586 (975)
Q Consensus 508 ~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~-l~~ 586 (975)
+.+.++.+..++.+++..||..|++|+..+... ....-..-.++.++.++...++......... +..
T Consensus 814 ~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~------------~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~ 881 (1549)
T KOG0392|consen 814 LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKS------------ATRETMATVINGFLPLLGDLDKFVRRQGADELIEL 881 (1549)
T ss_pred hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHH
Confidence 567788889999999999999999999986653 2233345566666666665544322222222 222
Q ss_pred HHh-hccchhhhHHHHHHHH
Q 002048 587 VLG-VAEISNEVAAPCISGL 605 (975)
Q Consensus 587 vi~-~~~~i~p~~~~l~~~L 605 (975)
+.. ..-.+.||.+-++..|
T Consensus 882 l~~~l~~~l~~~~~Llv~pl 901 (1549)
T KOG0392|consen 882 LDAVLMVGLVPYNPLLVVPL 901 (1549)
T ss_pred HHHhhcccccccceeehhhh
Confidence 222 4556667765444443
No 170
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=46.04 E-value=3.8e+02 Score=28.12 Aligned_cols=139 Identities=17% Similarity=0.177 Sum_probs=83.0
Q ss_pred ChhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCC---------ChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcc
Q 002048 4 NQETLQHLSQCFLHTLSPSPEPRRAAERSLAEMADRP---------NYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFR 74 (975)
Q Consensus 4 ~~~~~~~l~~~L~~tls~d~~~r~~AE~~L~~~~~~p---------~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~ 74 (975)
.+...+.|..+|+. +.|+.+++.|--.|-.....| |-...+..++.++ ++.+|.-|.-.+.|.
T Consensus 10 ~~~~l~~Ll~lL~~--t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p--~~~vr~~AL~aL~Nl---- 81 (254)
T PF04826_consen 10 EAQELQKLLCLLES--TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDP--NPSVREKALNALNNL---- 81 (254)
T ss_pred CHHHHHHHHHHHhc--CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCC--ChHHHHHHHHHHHhc----
Confidence 33344555555554 346668888877776655433 4444444555453 678887787777754
Q ss_pred cCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHh---cC--CHHHHHHHHHHHHHHhccc-CCCCCCchHHHHHHHhcccc
Q 002048 75 WAPASDRNSGPTLAPILDAEKDQIKSLIVGLML---TS--TPRIQSQLSEALVVVGNHD-FPKHWPTLLPELIANLKDAA 148 (975)
Q Consensus 75 W~~~~~~~~~~~~~~i~~e~K~~Ir~~ll~~l~---~~--~~~ir~qla~~i~~Ia~~D-~P~~Wp~Ll~~l~~~l~~~~ 148 (975)
..+.+.+..||..+-+.+- +. ++.++..--.++..+...+ |-+--.+-++.++.++.++
T Consensus 82 --------------s~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G- 146 (254)
T PF04826_consen 82 --------------SVNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSG- 146 (254)
T ss_pred --------------CCChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcC-
Confidence 2344555566654443322 22 2356655456666665433 3233445688888999988
Q ss_pred cCCChhHHhHHHHHHHHHHH
Q 002048 149 QSNNYVSINGILGTANSIFK 168 (975)
Q Consensus 149 ~~~d~~~~~~~L~~l~~i~k 168 (975)
+.....-+|++|..+.+
T Consensus 147 ---~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 147 ---SEKTKVQVLKVLVNLSE 163 (254)
T ss_pred ---ChHHHHHHHHHHHHhcc
Confidence 87777788888888765
No 171
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=46.00 E-value=2.5e+02 Score=33.60 Aligned_cols=141 Identities=14% Similarity=0.166 Sum_probs=79.3
Q ss_pred hccCC-HhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhH
Q 002048 500 RIQIP-KIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQ 578 (975)
Q Consensus 500 ~~~~~-~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~ 578 (975)
.+..+ ++....++|.+..++.+.+..+|..+...+..+.+.-+ -..++..+-+-+.+++. .........
T Consensus 378 ~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--------~~~vk~~ilP~l~~l~~--~tt~~~vkv 447 (700)
T KOG2137|consen 378 KEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--------VPFVKQAILPRLKNLAF--KTTNLYVKV 447 (700)
T ss_pred HhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--------HHHHHHHHHHHhhcchh--cccchHHHH
Confidence 34444 46688899999999999999999988888887776532 22334334444444421 222111233
Q ss_pred HHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHH
Q 002048 579 YIMKCIMRVLG-VAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQI 657 (975)
Q Consensus 579 ~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~ 657 (975)
.++-|+..+++ ++. ..+++.+.+++... +-.+|...++++.....++-.. +.-..-+.+.++|.+--
T Consensus 448 n~L~c~~~l~q~lD~------~~v~d~~lpi~~~~--~~~dp~iv~~~~~i~~~l~~~~----~~g~ev~~~~VlPlli~ 515 (700)
T KOG2137|consen 448 NVLPCLAGLIQRLDK------AAVLDELLPILKCI--KTRDPAIVMGFLRIYEALALII----YSGVEVMAENVLPLLIP 515 (700)
T ss_pred HHHHHHHHHHHHHHH------HHhHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHhhc----ccceeeehhhhhhhhhh
Confidence 44556555554 222 23455555555433 3356666666666665555442 22123455677777766
Q ss_pred HHhcc
Q 002048 658 ILQND 662 (975)
Q Consensus 658 il~~~ 662 (975)
+.-.+
T Consensus 516 ls~~~ 520 (700)
T KOG2137|consen 516 LSVAP 520 (700)
T ss_pred hhhcc
Confidence 54443
No 172
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=45.98 E-value=3.8e+02 Score=29.55 Aligned_cols=141 Identities=13% Similarity=0.178 Sum_probs=73.8
Q ss_pred hHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 002048 506 IHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIM 585 (975)
Q Consensus 506 ~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~ 585 (975)
..+..+|.-+.+.+.+++...|..|...|+ .+. .-..+.||+-..+..-...--........++|+.+.
T Consensus 174 ~Elq~yf~~It~a~~~~~~~~r~~aL~sL~---tD~--------gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ 242 (343)
T cd08050 174 KELQLYFEEITEALVGSNEEKRREALQSLR---TDP--------GLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVR 242 (343)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhc---cCC--------CchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHH
Confidence 345556666666666666566655554444 221 245677777776666554321111112334444444
Q ss_pred HHHh-hccchhhhHHHHHHHHHHHH--HHHHhCC-CCC--chhHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHH
Q 002048 586 RVLG-VAEISNEVAAPCISGLTSIL--NEVCKNP-KSP--IFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIIL 659 (975)
Q Consensus 586 ~vi~-~~~~i~p~~~~l~~~L~~~l--~~~~~~~-~~~--~~~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il 659 (975)
.++. -.=.+.||..+++..+..++ ...+.++ .+. .++...-++++.+++.. ...+..+.+.+.-.+..+|
T Consensus 243 ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f----~~~y~~l~~ri~~tl~k~l 318 (343)
T cd08050 243 ALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKF----STSYNTLQPRITRTLLKAL 318 (343)
T ss_pred HHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHc----CCCCCcHHHHHHHHHHHHH
Confidence 4444 33357789888887777544 2233333 222 23445555666666665 2234555666665566555
Q ss_pred hc
Q 002048 660 QN 661 (975)
Q Consensus 660 ~~ 661 (975)
..
T Consensus 319 ~d 320 (343)
T cd08050 319 LD 320 (343)
T ss_pred cC
Confidence 43
No 173
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=44.77 E-value=8.6e+02 Score=31.94 Aligned_cols=183 Identities=13% Similarity=0.227 Sum_probs=93.3
Q ss_pred cccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh-hccchhhhHHHHHHHHHHHH-HHHH--hCCCCCchh--HH
Q 002048 551 SADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG-VAEISNEVAAPCISGLTSIL-NEVC--KNPKSPIFN--HY 624 (975)
Q Consensus 551 ~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~~l-~~~~--~~~~~~~~~--~~ 624 (975)
.+.+.|+...+++..| |+..+++..-++.=|+..++. +..+ +||....+.-+...+ .+.. .+..+|.|. .+
T Consensus 43 ~~~~~pl~~~l~~~~~--L~h~d~dvrllvacCvseilRi~aPe-aPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~ 119 (1266)
T KOG1525|consen 43 LASLLPLADHLIKDFL--LKHKDKDVRLLVACCVSEILRIYAPE-APYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFY 119 (1266)
T ss_pred HHHHHHHHHHHhhHHH--hcCCCcChhHHHHHHHHHHHHHhCCC-CCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHH
Confidence 4567777777777754 455555445556668888888 6555 377654332222222 2221 345567663 56
Q ss_pred HHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhcccccchHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCcccccc
Q 002048 625 LFESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKR 704 (975)
Q Consensus 625 ~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~~~~~~~~~~~~lf~~l~~~~l~~~ 704 (975)
++|++..+.-.++- .-.+..+++.+.+.++-.+++.. .+....+
T Consensus 120 lletl~~~k~~l~~--------------------~l~d~~e~~~~~f~~f~d~~~~~---~~~~v~~------------- 163 (1266)
T KOG1525|consen 120 LLETLAKVKFCLLM--------------------LLEDCQELVHELFRTFFDLARKG---HPKKVFN------------- 163 (1266)
T ss_pred HHHHHHHhHHHhee--------------------eccchHHHHHHHHHHHHHHHhcc---ccHHHHH-------------
Confidence 77777765522211 11233455555555554444321 1111111
Q ss_pred CCCccchHHHHHHHHccCccchhccCchHHHHHHHHHhhcCCCCc-chHHHHHHHHHHhcchhhHhhhHHHHHHHHHHHh
Q 002048 705 SSNVPALVRLLQAFLQKVPREIAQEGKLREVLGIFNMLVLSPSTD-EQGFYVLNTIVESLEYGVIAQFVPHIWGVLFTRL 783 (975)
Q Consensus 705 ~~~l~~~~~~L~~~i~~~~~~~~~~~~~~~il~i~~~ll~~~~~~-~~a~~ll~~ii~~~~~~~~~~~l~~il~~~l~~L 783 (975)
+..++...|... +.+ ..+.+.-+|.+++.+..+. ..|.+|...++..++ ..+.+.+..++...+..-
T Consensus 164 ------~~~i~~~li~e~--d~v---~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a-~~~~~~i~~f~~~~~~~~ 231 (1266)
T KOG1525|consen 164 ------MLDIAIMLITEE--DTV---QSELLDVLLENLVKPGRDTIKEADKLASDLIERCA-DNLEDTIANFLNSCLTEY 231 (1266)
T ss_pred ------HHHHHHHHHHhh--ccc---hHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhh-hhhchhHHHHHHHHHhhc
Confidence 111111111110 011 1233334556666655433 567888888998885 667777777766665543
Q ss_pred h
Q 002048 784 Q 784 (975)
Q Consensus 784 ~ 784 (975)
.
T Consensus 232 ~ 232 (1266)
T KOG1525|consen 232 K 232 (1266)
T ss_pred c
Confidence 3
No 174
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.53 E-value=6.6e+02 Score=30.55 Aligned_cols=217 Identities=16% Similarity=0.159 Sum_probs=117.3
Q ss_pred HHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccc--------hHHHHHHHHHHhcCCCCchhhH
Q 002048 507 HAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITP--------YLSVLMTSLFNAFKFPESEENQ 578 (975)
Q Consensus 507 ~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p--------~l~~il~~L~~ll~~~~~~~~~ 578 (975)
.+...+..+--+++++...+|-.|.++|.++..-. ++. +....-++.+ .....+..|+ +...+..-+
T Consensus 279 ~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~-P~~-v~~cN~elE~lItd~NrsIat~AITtLL---KTG~e~sv~ 353 (865)
T KOG1078|consen 279 ELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKH-PQA-VTVCNLDLESLITDSNRSIATLAITTLL---KTGTESSVD 353 (865)
T ss_pred hcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhC-Ccc-ccccchhHHhhhcccccchhHHHHHHHH---HhcchhHHH
Confidence 33446667777788889999999999999865421 100 0000001111 1112233333 444433456
Q ss_pred HHHHHHHHHHh-hccchhhhHHHHHHHHHH-----------HHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCcchHHH
Q 002048 579 YIMKCIMRVLG-VAEISNEVAAPCISGLTS-----------ILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISA 646 (975)
Q Consensus 579 ~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~-----------~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~~~~~~ 646 (975)
.+|+.+...+. ++++..-...+-+..|+. .+..+.++.+--.|+..++++|..++.. +|+.-..
T Consensus 354 rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~----~pdsKe~ 429 (865)
T KOG1078|consen 354 RLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEE----NPDSKER 429 (865)
T ss_pred HHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHh----CcchhhH
Confidence 78888877777 777754332222222222 2233334555556777888888888776 3444444
Q ss_pred HHHhhHHHHHHHHhcccccchHHHHHHHHHHHHhcCC-CCchhHH-HHHHhhcCccccccCCCccchHHHHHHHHccCcc
Q 002048 647 FEASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRP-PLSSNYM-QIFNLLLSPDSWKRSSNVPALVRLLQAFLQKVPR 724 (975)
Q Consensus 647 l~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~~~~-~~~~~~~-~lf~~l~~~~l~~~~~~l~~~~~~L~~~i~~~~~ 724 (975)
--+.+.-.|..+ +|-..+..++..+-+-.|. +.|..|. .++..+ ..++.-.--+.+.+|..|- .+..
T Consensus 430 ~L~~LCefIEDc------e~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRv----iLEn~ivRaaAv~alaKfg-~~~~ 498 (865)
T KOG1078|consen 430 GLEHLCEFIEDC------EFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRV----ILENAIVRAAAVSALAKFG-AQDV 498 (865)
T ss_pred HHHHHHHHHHhc------cchHHHHHHHHHHhccCCCCCCcchhhHHHhhhh----hhhhhhhHHHHHHHHHHHh-cCCC
Confidence 444444444432 5667788888888777663 3444454 333332 2233222334455566555 1111
Q ss_pred chhccCchHHHHHHHHHhhcCCCC
Q 002048 725 EIAQEGKLREVLGIFNMLVLSPST 748 (975)
Q Consensus 725 ~~~~~~~~~~il~i~~~ll~~~~~ 748 (975)
.-.+.|...+.+++.+...
T Consensus 499 -----~l~~sI~vllkRc~~D~Dd 517 (865)
T KOG1078|consen 499 -----VLLPSILVLLKRCLNDSDD 517 (865)
T ss_pred -----CccccHHHHHHHHhcCchH
Confidence 2356777888889876544
No 175
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=43.89 E-value=5e+02 Score=28.99 Aligned_cols=217 Identities=14% Similarity=0.118 Sum_probs=105.4
Q ss_pred cchhHhhHHHHHHHhh------ccCCHhHHHhHHHHHHHhhcCC--CchHHHHHHHHHHHHHccccCCCccccccccccc
Q 002048 485 FPMLKAGALKFFTMFR------IQIPKIHAFQFFPDLVRFLGAE--SNVVHSYAASCIEKLLQVKDEGGKSRYNSADITP 556 (975)
Q Consensus 485 ~~~Lr~ra~~~l~~f~------~~~~~~~~~~~~~~l~~~L~~~--~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p 556 (975)
.--|-..|++++|.|- +.++.+...-++...+..+.++ +..+...+...|. .. .|++..+..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls----~Q------~f~~~~~~~ 128 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLS----DQ------KFSPKIMTS 128 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----cC------CCCCcccch
Confidence 4467788999999863 4567777777999999999876 3333333333222 22 244444444
Q ss_pred hHHHHHHHHHHhcCC-CCch--hhHHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHH
Q 002048 557 YLSVLMTSLFNAFKF-PESE--ENQYIMKCIMRVLG-VAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVL 632 (975)
Q Consensus 557 ~l~~il~~L~~ll~~-~~~~--~~~~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l 632 (975)
.....+-..+.-+.+ .... ..|. +.++.+++. +.+.+...+..=+..+.. ..... ....+..+..+...+
T Consensus 129 ~~~~~l~~~l~~i~~~~~s~si~~er-L~i~~~ll~q~p~~M~~~~~~W~~~l~~---~l~~~--~k~ir~~a~~l~~~~ 202 (372)
T PF12231_consen 129 DRVERLLAALHNIKNRFPSKSIISER-LNIYKRLLSQFPQQMIKHADIWFPILFP---DLLSS--AKDIRTKAISLLLEA 202 (372)
T ss_pred hhHHHHHHHHHHhhccCCchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhc--chHHHHHHHHHHHHH
Confidence 444433333333333 3322 2232 335555555 544444332221222221 11111 111222233333333
Q ss_pred HHHhhhcCcchHHHHHHhhHHHHHHHHhcccccchHHHHHHHHHHHHh-cCCCCchhHHHHHHhhcCccccccCCCccch
Q 002048 633 VRRACQRDPSLISAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIEL-NRPPLSSNYMQIFNLLLSPDSWKRSSNVPAL 711 (975)
Q Consensus 633 i~~~~~~~~~~~~~l~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~-~~~~~~~~~~~lf~~l~~~~l~~~~~~l~~~ 711 (975)
...+ +.+ ..+...+...+...+.+. .|.++..+-+..++.. ......+.+|..+-.++...
T Consensus 203 ~~~l-~~~----~~~s~~~~~~~~~~~~~~--~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~----------- 264 (372)
T PF12231_consen 203 KKCL-GPN----KELSKSVLEDLQRSLENG--KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSS----------- 264 (372)
T ss_pred HHHh-Chh----HHHHHHHHHHhccccccc--cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCc-----------
Confidence 2332 111 222233333333333222 4666777777777776 22335566776555554311
Q ss_pred HHHHHHHHccCccchhccCchHHHHHHHHHhhcCCCC
Q 002048 712 VRLLQAFLQKVPREIAQEGKLREVLGIFNMLVLSPST 748 (975)
Q Consensus 712 ~~~L~~~i~~~~~~~~~~~~~~~il~i~~~ll~~~~~ 748 (975)
.+-..+++...+.+.++++++.+.
T Consensus 265 -------------~~~~w~~~n~wL~v~e~cFn~~d~ 288 (372)
T PF12231_consen 265 -------------RLDSWEHLNEWLKVPEKCFNSSDP 288 (372)
T ss_pred -------------hhhccHhHhHHHHHHHHHhcCCCH
Confidence 122235788888888888876543
No 176
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=42.53 E-value=40 Score=32.67 Aligned_cols=53 Identities=30% Similarity=0.368 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcccCCCCCC-----chHHHHHHHhcccccCCChhHHhHHHHHHHHHHHhhhc
Q 002048 116 QLSEALVVVGNHDFPKHWP-----TLLPELIANLKDAAQSNNYVSINGILGTANSIFKKFRY 172 (975)
Q Consensus 116 qla~~i~~Ia~~D~P~~Wp-----~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i~k~~~~ 172 (975)
.++.+++.+....=|+.|+ +++|.+..+++|. ...++..||.++..+++.|..
T Consensus 45 vlvD~L~vl~~~~~~~~~tLd~c~~lLP~i~~LL~Sk----~E~~i~~aL~~L~~i~~~f~~ 102 (164)
T PF13925_consen 45 VLVDVLSVLNQSLKPEKWTLDLCVDLLPLIEELLQSK----YESYISVALEMLRSILKKFGP 102 (164)
T ss_pred HHHHHHHHHHHhcCcCcccHHHHHHHHHHHHHHHhCC----cHHHHHHHHHHHHHHHHHHHH
Confidence 4567777787666667784 7999999999998 788899999999999998853
No 177
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=41.69 E-value=7e+02 Score=30.02 Aligned_cols=126 Identities=13% Similarity=0.120 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhc
Q 002048 395 RIACELLKGIATHY-RQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVI 473 (975)
Q Consensus 395 ~~A~~ll~~L~~~~-~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v 473 (975)
.+-.+=++.|.++- ++.+...++.++...+. ..+....+.++..+..+++.+ | ..+..+.|
T Consensus 368 l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~------~~~~~iQ~~~L~~lptv~e~i-----------D-~~~vk~~i 429 (700)
T KOG2137|consen 368 LFILENMDLLKEKTPPEEVKEKILPLLYRSLE------DSDVQIQELALQILPTVAESI-----------D-VPFVKQAI 429 (700)
T ss_pred hhHHhhHHHHHhhCChHHHHHHHHHHHHHHhc------CcchhhHHHHHHhhhHHHHhc-----------c-HHHHHHHH
Confidence 33333344455553 45667777777776554 356788999999999988654 3 35677778
Q ss_pred ccccCCC-CCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 002048 474 VPELQSP-DVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLL 538 (975)
Q Consensus 474 ~p~l~~~-~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~ 538 (975)
+|.+..- -......+|..++-+++.+.+.+..-...+.+..+..|.+..++.+...-....+++.
T Consensus 430 lP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~ 495 (700)
T KOG2137|consen 430 LPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALA 495 (700)
T ss_pred HHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 8877541 1114577888899999998876666566666677777877666555444444444433
No 178
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=40.61 E-value=5.1e+02 Score=28.07 Aligned_cols=106 Identities=22% Similarity=0.320 Sum_probs=56.8
Q ss_pred hhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchh
Q 002048 409 RQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPML 488 (975)
Q Consensus 409 ~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~L 488 (975)
..++...++..+.+++..- | .+... +...+... +...+.+|+. .+.. +..++
T Consensus 70 ~~d~v~yvL~li~dll~~~---~-----~~~~~---~~~~~~~~--------~~~~~~~fl~-----ll~~----~D~~i 121 (312)
T PF03224_consen 70 NDDTVQYVLTLIDDLLSDD---P-----SRVEL---FLELAKQD--------DSDPYSPFLK-----LLDR----NDSFI 121 (312)
T ss_dssp -HHHHHHHHHHHHHHHH-S---S-----SSHHH---HHHHHH-T--------TH--HHHHHH-----H-S-----SSHHH
T ss_pred cHHHHHHHHHHHHHHHhcC---H-----HHHHH---HHHhcccc--------cchhHHHHHH-----HhcC----CCHHH
Confidence 5677788888888888741 1 12222 22222111 0113455543 2333 46889
Q ss_pred HhhHHHHHHHhhccCCHhH---HHhHHHHHHHhhcC----CCchHHHHHHHHHHHHHcccc
Q 002048 489 KAGALKFFTMFRIQIPKIH---AFQFFPDLVRFLGA----ESNVVHSYAASCIEKLLQVKD 542 (975)
Q Consensus 489 r~ra~~~l~~f~~~~~~~~---~~~~~~~l~~~L~~----~~~~V~~~Aa~aL~~~~~~~~ 542 (975)
+..|+.+++.+...-+... ..++++.+++.|.+ ++..++..|+.++..++..+.
T Consensus 122 ~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~ 182 (312)
T PF03224_consen 122 QLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE 182 (312)
T ss_dssp HHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH
T ss_pred HHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch
Confidence 9999999998765432211 23555666655554 456667788999999887753
No 179
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=39.76 E-value=91 Score=26.37 Aligned_cols=51 Identities=12% Similarity=0.133 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHhcccCC---CCCCchHHHHHHHhcccccCCChhHHhHHHHHHHH
Q 002048 111 PRIQSQLSEALVVVGNHDFP---KHWPTLLPELIANLKDAAQSNNYVSINGILGTANS 165 (975)
Q Consensus 111 ~~ir~qla~~i~~Ia~~D~P---~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~ 165 (975)
..+|..+-.|+..|...-.. ..||.++..+-.....+ +...+..|..++..
T Consensus 32 ~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~----~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 32 IDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDN----DESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCC----CccHHHHHHHHHhh
Confidence 46888888888888775443 47999999999888766 66677777766543
No 180
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.66 E-value=5.4e+02 Score=28.99 Aligned_cols=64 Identities=17% Similarity=0.328 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHhhcCccccccCCCccchHHHHHHHHccCccchhccCchHHHHHHHHHhhcC
Q 002048 668 PYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKRSSNVPALVRLLQAFLQKVPREIAQEGKLREVLGIFNMLVLS 745 (975)
Q Consensus 668 ~~~l~ll~~ll~~~~~~~~~~~~~lf~~l~~~~l~~~~~~l~~~~~~L~~~i~~~~~~~~~~~~~~~il~i~~~ll~~ 745 (975)
-|+.++++.+++++.. +. -+|..-+-+..+++-+..|-..+|...-...+++.+|+.+..++..
T Consensus 244 ~YasEiLaillq~s~e--~~------------~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~ 307 (536)
T KOG2734|consen 244 QYASEILAILLQNSDE--NR------------KLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMA 307 (536)
T ss_pred HHHHHHHHHHhccCch--hh------------hhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcC
Confidence 4789999999888763 00 0222222334445557778888877665445777777766655543
No 181
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=39.61 E-value=61 Score=23.73 Aligned_cols=34 Identities=9% Similarity=0.184 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccc
Q 002048 94 EKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHD 128 (975)
Q Consensus 94 ~K~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D 128 (975)
+.+++|+-+++.|.+.+.. |.++.-+|+.+.+.+
T Consensus 3 n~eYLKNVll~fl~~~e~~-r~~ll~vi~tlL~fs 36 (46)
T smart00755 3 NFEYLKNVLLQFLTLRESE-RETLLKVISTVLQLS 36 (46)
T ss_pred cHHHHHHHHHHHhccCcch-HHHHHHHHHHHhCCC
Confidence 4578999999998887755 899999999888765
No 182
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=38.95 E-value=95 Score=21.64 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=20.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhc
Q 002048 101 LIVGLMLTSTPRIQSQLSEALVVVGN 126 (975)
Q Consensus 101 ~ll~~l~~~~~~ir~qla~~i~~Ia~ 126 (975)
.|++.|.+.+..++.+.+-+++.|++
T Consensus 16 ~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 16 PLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46666666778899999999999874
No 183
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.06 E-value=3.3e+02 Score=32.43 Aligned_cols=162 Identities=15% Similarity=0.240 Sum_probs=82.8
Q ss_pred hhHHHHHHHhhcc--CC---HhHHHhHHH-HHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHH
Q 002048 490 AGALKFFTMFRIQ--IP---KIHAFQFFP-DLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMT 563 (975)
Q Consensus 490 ~ra~~~l~~f~~~--~~---~~~~~~~~~-~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~ 563 (975)
+..-.++|.|..+ .. ++.+..++. .+.+.|+.++..||..|+.-+-.+....++ +...++.-..+..-..
T Consensus 148 sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dp----d~~~e~mD~i~~kQf~ 223 (1005)
T KOG1949|consen 148 SKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDP----DLHAEEMDSIIQKQFE 223 (1005)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCC----CccHHHHHHHHHHHHH
Confidence 3444566666543 21 345555554 456889989999999999877766555432 1222333333333344
Q ss_pred HHHHhcCCCCchhhHHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCcc
Q 002048 564 SLFNAFKFPESEENQYIMKCIMRVLG-VAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPS 642 (975)
Q Consensus 564 ~L~~ll~~~~~~~~~~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~~ 642 (975)
.|..++.+.--.........+.+++. +=+-+-|- .+...|..++.+++.+-.. ..+..+|+++..++. +|.
T Consensus 224 ~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~--i~~~ll~kI~d~~a~dt~s-~VR~svf~gl~~~l~-----np~ 295 (1005)
T KOG1949|consen 224 ELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPT--ILIDLLKKITDELAFDTSS-DVRCSVFKGLPMILD-----NPL 295 (1005)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHhhhccch-heehhHhcCcHHHHc-----Ccc
Confidence 45555544211112223344555555 44443321 1222333345455533221 334567777776543 354
Q ss_pred hHHHHHHhhHHHHHHHHhcccc
Q 002048 643 LISAFEASILPSLQIILQNDVT 664 (975)
Q Consensus 643 ~~~~l~~~l~P~i~~il~~~~~ 664 (975)
+.+ +-+.++|.+.+.+...+.
T Consensus 296 sh~-~le~~Lpal~~~l~D~se 316 (1005)
T KOG1949|consen 296 SHP-LLEQLLPALRYSLHDNSE 316 (1005)
T ss_pred chh-HHHHHHHhcchhhhccch
Confidence 443 345567777777765554
No 184
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.75 E-value=88 Score=31.16 Aligned_cols=89 Identities=18% Similarity=0.141 Sum_probs=63.6
Q ss_pred HHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHH
Q 002048 508 AFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRV 587 (975)
Q Consensus 508 ~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~v 587 (975)
.-..++.....|.+.+-+-|..|-..+..++... .+.+.|.+|+++--|=..+...+.......++++..+
T Consensus 112 y~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~---------g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~l 182 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETDHPYRFVARQGITDLLLAG---------GEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQL 182 (262)
T ss_pred chHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhc---------ccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 4456677777787778888888888877776653 4688999999999988888776544444455555554
Q ss_pred Hh----hccchhhhHHHHHHHH
Q 002048 588 LG----VAEISNEVAAPCISGL 605 (975)
Q Consensus 588 i~----~~~~i~p~~~~l~~~L 605 (975)
+. .+..+.||.-+++..+
T Consensus 183 v~~~~~vG~aLVPfYRQlLp~~ 204 (262)
T KOG3961|consen 183 VVSVGCVGAALVPFYRQLLPVL 204 (262)
T ss_pred HHhccccchhhhhHHHHhhhhh
Confidence 44 4778889988777654
No 185
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=37.45 E-value=9.7e+02 Score=30.42 Aligned_cols=136 Identities=18% Similarity=0.239 Sum_probs=88.1
Q ss_pred HHHHHHHH--HHhcCCChHHHHHHHHHHHHHhc-CCCh--HHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCC
Q 002048 8 LQHLSQCF--LHTLSPSPEPRRAAERSLAEMAD-RPNY--GLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRN 82 (975)
Q Consensus 8 ~~~l~~~L--~~tls~d~~~r~~AE~~L~~~~~-~p~f--~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~ 82 (975)
.++|..+| .+.++++-+.|++|-+.|++.-. +++| +..|...+.- .....|+-+-..++..|..+
T Consensus 468 l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy--~sV~~rsNcy~~l~~~ia~~-------- 537 (1133)
T KOG1943|consen 468 LQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDY--FSVTNRSNCYLDLCVSIAEF-------- 537 (1133)
T ss_pred HHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcch--hhhhhhhhHHHHHhHHHHhh--------
Confidence 35555555 46678888999999999998765 4554 3333333222 24455665556666555532
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHhcccCCCCCC-chHHHHHHHhcccccCCChhHH
Q 002048 83 SGPTLAPILDAEKDQIKSLIVGLMLT-----STPRIQSQLSEALVVVGNHDFPKHWP-TLLPELIANLKDAAQSNNYVSI 156 (975)
Q Consensus 83 ~~~~~~~i~~e~K~~Ir~~ll~~l~~-----~~~~ir~qla~~i~~Ia~~D~P~~Wp-~Ll~~l~~~l~~~~~~~d~~~~ 156 (975)
...++.+++-++. =+..+|-+.|.++..++.. +|+.-- ..++.++....+. |....
T Consensus 538 -------------~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~-~pk~~a~~~L~~lld~~ls~----~~~~r 599 (1133)
T KOG1943|consen 538 -------------SGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLT-EPKYLADYVLPPLLDSTLSK----DASMR 599 (1133)
T ss_pred -------------hhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh-hHHhhcccchhhhhhhhcCC----ChHHh
Confidence 1233444444433 3678999999999997665 454433 4666777777777 88889
Q ss_pred hHHHHHHHHHHHhhh
Q 002048 157 NGILGTANSIFKKFR 171 (975)
Q Consensus 157 ~~~L~~l~~i~k~~~ 171 (975)
+|......+|.-..+
T Consensus 600 ~g~~la~~ev~~~~~ 614 (1133)
T KOG1943|consen 600 HGVFLAAGEVIGALR 614 (1133)
T ss_pred hhhHHHHHHHHHHhh
Confidence 999888888876543
No 186
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=36.33 E-value=4.4e+02 Score=30.59 Aligned_cols=105 Identities=10% Similarity=0.009 Sum_probs=60.3
Q ss_pred cchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCC-CchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHH
Q 002048 485 FPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAE-SNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMT 563 (975)
Q Consensus 485 ~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~-~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~ 563 (975)
.-=+|+.|...+|--+-. . ...++..+..|.++ +.-||...|.||.-.|..+.. .....+++
T Consensus 565 nDDVrRAAViAlGfvc~~-D----~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~------------~~a~diL~ 627 (926)
T COG5116 565 NDDVRRAAVIALGFVCCD-D----RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD------------KVATDILE 627 (926)
T ss_pred chHHHHHHHHheeeeEec-C----cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc------------HHHHHHHH
Confidence 455788777777753321 1 23455666777765 788999999999988876431 01223333
Q ss_pred HHHHhcCCCCchhhHHHHHHHHHHHh-hccchhhhHHHHHHHHHHHH
Q 002048 564 SLFNAFKFPESEENQYIMKCIMRVLG-VAEISNEVAAPCISGLTSIL 609 (975)
Q Consensus 564 ~L~~ll~~~~~~~~~~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~~l 609 (975)
. ++.++........|=++.-++. +.+++.|....+..++...+
T Consensus 628 ~---L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI 671 (926)
T COG5116 628 A---LMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVI 671 (926)
T ss_pred H---HhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHH
Confidence 3 3344432333333334444444 77888877776766655443
No 187
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=35.96 E-value=1.4e+02 Score=35.63 Aligned_cols=102 Identities=9% Similarity=0.051 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhH
Q 002048 413 METVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGA 492 (975)
Q Consensus 413 ~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra 492 (975)
...+.+++.+.+.+..+ ..+-..+-.+|.++|.++.. .....+..++. .+. +..+.+|..|
T Consensus 440 ~~~~~~~l~~~l~~~~~--~~~~~~~~~~LkaLGN~g~~------------~~i~~l~~~l~---~~~--~~~~~iR~~A 500 (574)
T smart00638 440 LEELLKYLHELLQQAVS--KGDEEEIQLYLKALGNAGHP------------SSIKVLEPYLE---GAE--PLSTFIRLAA 500 (574)
T ss_pred HHHHHHHHHHHHHHHHh--cCCchheeeHHHhhhccCCh------------hHHHHHHHhcC---CCC--CCCHHHHHHH
Confidence 34556666666655432 12334566778888876421 12233333332 121 2468999999
Q ss_pred HHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHH
Q 002048 493 LKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIE 535 (975)
Q Consensus 493 ~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~ 535 (975)
+|.+.+.+...+......+++...+.= .+.-||+.|..+|-
T Consensus 501 v~Alr~~a~~~p~~v~~~l~~i~~n~~--e~~EvRiaA~~~lm 541 (574)
T smart00638 501 ILALRNLAKRDPRKVQEVLLPIYLNRA--EPPEVRMAAVLVLM 541 (574)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHcCCC--CChHHHHHHHHHHH
Confidence 999998887766555555555553221 35668988886554
No 188
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.67 E-value=7.3e+02 Score=28.47 Aligned_cols=81 Identities=17% Similarity=0.180 Sum_probs=64.3
Q ss_pred CcchhHhhHHHHHHHhhccCCH---hHHHhHHHHHHHhhcCC-CchHHHHHHHHHHHHHccccCCCccccccccccchHH
Q 002048 484 AFPMLKAGALKFFTMFRIQIPK---IHAFQFFPDLVRFLGAE-SNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLS 559 (975)
Q Consensus 484 ~~~~Lr~ra~~~l~~f~~~~~~---~~~~~~~~~l~~~L~~~-~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~ 559 (975)
+...+|+.||..++.-.+..|. .+...++.+++..|-|+ +..|..+|..+|..+.... ...++.+|+.
T Consensus 270 p~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~--------~~~~l~~~~l 341 (533)
T KOG2032|consen 270 PSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA--------SNDDLESYLL 341 (533)
T ss_pred chhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh--------hhcchhhhch
Confidence 4669999999999986665542 45777888888888775 7999999999999887653 3568899999
Q ss_pred HHHHHHHHhcCCC
Q 002048 560 VLMTSLFNAFKFP 572 (975)
Q Consensus 560 ~il~~L~~ll~~~ 572 (975)
++--.+-++....
T Consensus 342 ~ialrlR~l~~se 354 (533)
T KOG2032|consen 342 NIALRLRTLFDSE 354 (533)
T ss_pred hHHHHHHHHHHhc
Confidence 9988888887554
No 189
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=33.84 E-value=7.8e+02 Score=28.88 Aligned_cols=75 Identities=9% Similarity=0.053 Sum_probs=56.5
Q ss_pred ccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCC---HhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHc
Q 002048 463 VDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIP---KIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQ 539 (975)
Q Consensus 463 ~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~---~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~ 539 (975)
.++.+-+-.|++-.+.+ ...-+|.|+|..+....+.+. +.....++..+..-+-|....||..|..+|.++-+
T Consensus 86 ~~~V~~~~~h~lRg~es----kdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe 161 (885)
T COG5218 86 EELVAGTFYHLLRGTES----KDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQE 161 (885)
T ss_pred hHHHHHHHHHHHhcccC----cchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Confidence 34444445677777766 468899999999999887653 45566677777777778899999999999998765
Q ss_pred cc
Q 002048 540 VK 541 (975)
Q Consensus 540 ~~ 541 (975)
..
T Consensus 162 ~~ 163 (885)
T COG5218 162 ME 163 (885)
T ss_pred cc
Confidence 53
No 190
>PRK04330 hypothetical protein; Provisional
Probab=33.70 E-value=2.2e+02 Score=24.11 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHhc
Q 002048 7 TLQHLSQCFLHTLSP---SPEPRRAAERSLAEMAD 38 (975)
Q Consensus 7 ~~~~l~~~L~~tls~---d~~~r~~AE~~L~~~~~ 38 (975)
...+..+.|.....- -.++|+.|++....+..
T Consensus 10 ~ik~~~~~L~~I~~D~sVPRNIRraa~ea~~~L~~ 44 (88)
T PRK04330 10 KIKQAIQMLEEIINDTSVPRNIRRAATEAKEILLN 44 (88)
T ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhC
Confidence 344555555544332 25799999988877754
No 191
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=33.04 E-value=4.4e+02 Score=33.57 Aligned_cols=127 Identities=15% Similarity=0.159 Sum_probs=77.0
Q ss_pred HHHHHHHHHH---hh-hhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhc
Q 002048 398 CELLKGIATH---YR-QHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVI 473 (975)
Q Consensus 398 ~~ll~~L~~~---~~-~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v 473 (975)
.+++..+|+. || +.++.-+.+++.+......- ..+.-.+-||..++|-+.-...+-+ ..++.-+|+
T Consensus 898 ~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~--~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llft--- 967 (1251)
T KOG0414|consen 898 ADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGL--FSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFT--- 967 (1251)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCc--CCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHH---
Confidence 4556666655 45 66666666666665542111 2345678888888886532110000 011222221
Q ss_pred ccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHcc
Q 002048 474 VPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQV 540 (975)
Q Consensus 474 ~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~ 540 (975)
-+.. .+.|.+|+-+..-+|-|.-.+| ..+...-+.+...|+|++.-||-+|...|..++-.
T Consensus 968 --imek---sp~p~IRsN~VvalgDlav~fp-nlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn 1028 (1251)
T KOG0414|consen 968 --IMEK---SPSPRIRSNLVVALGDLAVRFP-NLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN 1028 (1251)
T ss_pred --HHhc---CCCceeeecchheccchhhhcc-cccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh
Confidence 1221 2578999888888887765443 44555667788889999999999999998887653
No 192
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=32.19 E-value=1.5e+02 Score=29.43 Aligned_cols=68 Identities=16% Similarity=0.121 Sum_probs=56.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccCCChhHHhHHHHHHHHHHHhhhc
Q 002048 100 SLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSIFKKFRY 172 (975)
Q Consensus 100 ~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i~k~~~~ 172 (975)
..+++...++...+|.....+++.|.+.-+-+=| .-+|.++.+..++ ++...+.|..++..+.++|..
T Consensus 11 ~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~-~cvp~lIAL~ts~----~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 11 KNILELCLSSDDSVRLAALQVLELILRQGLVNPK-QCVPTLIALETSP----NPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH-HHHhHhhhhhCCC----ChHHHHHHHHHHHHHHHHhHH
Confidence 4566777777889999999999999998775433 3789999988887 888899999999999998853
No 193
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.77 E-value=8.8e+02 Score=28.27 Aligned_cols=50 Identities=8% Similarity=0.165 Sum_probs=33.6
Q ss_pred hHHHHHHHHHhhcCCCCc---chHHHHHHHHHHhcchhhHhhhHHHHHHHHHHH
Q 002048 732 LREVLGIFNMLVLSPSTD---EQGFYVLNTIVESLEYGVIAQFVPHIWGVLFTR 782 (975)
Q Consensus 732 ~~~il~i~~~ll~~~~~~---~~a~~ll~~ii~~~~~~~~~~~l~~il~~~l~~ 782 (975)
.+.+-.++.++.++..+- ..++..+..++.+++. .-++.+|.+++.+++.
T Consensus 386 ~e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~-~e~~i~pevl~~i~nl 438 (559)
T KOG2081|consen 386 DECLKQMYIRLKENNASWEEVEAALFILRAVAKNVSP-EENTIMPEVLKLICNL 438 (559)
T ss_pred HHHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCc-cccchHHHHHHHHhCC
Confidence 344445666666533331 4577889999999863 3467889998888765
No 194
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=31.55 E-value=4.7e+02 Score=28.52 Aligned_cols=144 Identities=18% Similarity=0.178 Sum_probs=71.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHhcCCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcc-cCCCCCCCCCCC--
Q 002048 10 HLSQCFLHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFR-WAPASDRNSGPT-- 86 (975)
Q Consensus 10 ~l~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~-W~~~~~~~~~~~-- 86 (975)
.+..+.....+++..+|..|=..|-.+. .|.....|...+.+ +.+..+|..|+..|.+.-..+ +.+--.......
T Consensus 75 av~~l~~~l~d~~~~vr~~a~~aLg~~~-~~~a~~~li~~l~~-d~~~~vR~~aa~aL~~~~~~~a~~~l~~~l~~~~~~ 152 (335)
T COG1413 75 AVPLLRELLSDEDPRVRDAAADALGELG-DPEAVPPLVELLEN-DENEGVRAAAARALGKLGDERALDPLLEALQDEDSG 152 (335)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHccC-ChhHHHHHHHHHHc-CCcHhHHHHHHHHHHhcCchhhhHHHHHHhccchhh
Confidence 3333444445566677777766555443 45556666666664 346677777776666544433 221000000000
Q ss_pred --cCCCCHHHHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccc
Q 002048 87 --LAPILDAEKDQIKS----------------LIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAA 148 (975)
Q Consensus 87 --~~~i~~e~K~~Ir~----------------~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~ 148 (975)
........ ..+|. .+...+......||...+.+++.+.... +.+.+.+...++.+
T Consensus 153 ~a~~~~~~~~-~~~r~~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~- 225 (335)
T COG1413 153 SAAAALDAAL-LDVRAAAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN-----VEAADLLVKALSDE- 225 (335)
T ss_pred hhhhhccchH-HHHHHHHHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCC-
Confidence 00000000 01222 2222333333457777777777777765 45667777777666
Q ss_pred cCCChhHHhHHHHHHHH
Q 002048 149 QSNNYVSINGILGTANS 165 (975)
Q Consensus 149 ~~~d~~~~~~~L~~l~~ 165 (975)
+......++..+..
T Consensus 226 ---~~~vr~~~~~~l~~ 239 (335)
T COG1413 226 ---SLEVRKAALLALGE 239 (335)
T ss_pred ---CHHHHHHHHHHhcc
Confidence 66555555544443
No 195
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=31.21 E-value=91 Score=27.40 Aligned_cols=63 Identities=19% Similarity=0.280 Sum_probs=44.0
Q ss_pred cchHHHHHHhhHHHHHHHHhcccccchHHHHHHHHHHHHhcCCCCchhHH-HHHHhhcCccccc
Q 002048 641 PSLISAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRPPLSSNYM-QIFNLLLSPDSWK 703 (975)
Q Consensus 641 ~~~~~~l~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~~~~~~~~~~~-~lf~~l~~~~l~~ 703 (975)
|+....+.+.++..+...+..=..+.-.+++.++..+++..|..+-+..| .+++..+....|.
T Consensus 2 ~~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 2 PELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred hHHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 34455666777777777776655677889999999999999874234444 7777776654454
No 196
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=30.90 E-value=1.6e+03 Score=30.99 Aligned_cols=102 Identities=10% Similarity=0.066 Sum_probs=65.3
Q ss_pred ChHHHHHHHHHHHhhhhcccCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhcccCC---C
Q 002048 56 DEQIRHAAAVNFKNHLRFRWAPASDRNSGPTLAPILDAEKDQIKSLIVGLMLTS-TPRIQSQLSEALVVVGNHDFP---K 131 (975)
Q Consensus 56 ~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~~~~~i~~e~K~~Ir~~ll~~l~~~-~~~ir~qla~~i~~Ia~~D~P---~ 131 (975)
+..+|..|.-.||..--+.-...+- .--.-.|..+|-- ...|.+. ...+|..+-.|+..|...-.. .
T Consensus 1150 n~~va~fAidsLrQLs~kfle~eEL--------~~f~FQkefLkPf-e~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkS 1220 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMKFLEREEL--------ANYNFQNEFMKPF-VIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKS 1220 (1780)
T ss_pred chhHHHHHHHHHHHHHHHhcchhhh--------hchhHHHHHHHHH-HHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhc
Confidence 3567777777777766665432210 0011235566432 2333333 346888888888877654322 5
Q ss_pred CCCchHHHHHHHhcccccCCChhHHhHHHHHHHHHHHhh
Q 002048 132 HWPTLLPELIANLKDAAQSNNYVSINGILGTANSIFKKF 170 (975)
Q Consensus 132 ~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i~k~~ 170 (975)
.|+..+..+....... +...+.-|..++..|++++
T Consensus 1221 GWktIF~VLs~aa~d~----~e~iV~lAFetl~~I~~d~ 1255 (1780)
T PLN03076 1221 GWKSMFMVFTTAAYDD----HKNIVLLAFEIIEKIIREY 1255 (1780)
T ss_pred CcHHHHHHHHHHHhCc----cHHHHHHHHHHHHHHHHhh
Confidence 8999999998887766 7777888898888888764
No 197
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=30.33 E-value=37 Score=21.44 Aligned_cols=14 Identities=7% Similarity=0.052 Sum_probs=10.2
Q ss_pred hHhhHHHHHHHhhc
Q 002048 488 LKAGALKFFTMFRI 501 (975)
Q Consensus 488 Lr~ra~~~l~~f~~ 501 (975)
+|..|.+.+|++.+
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 57788888888766
No 198
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=29.60 E-value=65 Score=31.23 Aligned_cols=59 Identities=20% Similarity=0.247 Sum_probs=38.3
Q ss_pred hHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcC--CCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHH
Q 002048 488 LKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGA--ESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSL 565 (975)
Q Consensus 488 Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~--~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L 565 (975)
-...+..++.+|... + ... .+.+|+. ++..||.+|..+|+.+ +.+++.-|+++++|.|
T Consensus 62 e~~e~~~lL~~W~~i-~---~~~----aLeLL~~~f~~~~VR~yAV~~L~~~------------sd~eL~~yL~QLVQaL 121 (166)
T cd00870 62 EVKQALELMPKWAKI-D---IED----ALELLSPYFTNPVVRKYAVSRLKLA------------SDEELLLYLLQLVQAL 121 (166)
T ss_pred HHHHHHHHHhcCCCC-C---HHH----HHHHcCccCCCHHHHHHHHHHHHhC------------CHHHHHHHHHHHHHHH
Confidence 334455566666432 1 222 2344554 3789999999988862 3458999999999987
Q ss_pred H
Q 002048 566 F 566 (975)
Q Consensus 566 ~ 566 (975)
=
T Consensus 122 K 122 (166)
T cd00870 122 K 122 (166)
T ss_pred H
Confidence 4
No 199
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.44 E-value=3.5e+02 Score=28.99 Aligned_cols=90 Identities=12% Similarity=0.149 Sum_probs=53.7
Q ss_pred hHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 002048 506 IHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIM 585 (975)
Q Consensus 506 ~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~ 585 (975)
..+..++-.+++.+.++.-.|.-.||.++..+++..+ ..+.+.++.++..|.--...++.++.+...
T Consensus 125 ~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln-------------~~i~~~ld~lv~~Ll~ka~~dnrFvreda~ 191 (334)
T KOG2933|consen 125 PMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLN-------------NSIDQELDDLVTQLLHKASQDNRFVREDAE 191 (334)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhhhcccchHHHHHHH
Confidence 5677888888999998877777789999888777532 122223344433332222225566666655
Q ss_pred HHHh-hccchhhhHHHHHHHHHHHHH
Q 002048 586 RVLG-VAEISNEVAAPCISGLTSILN 610 (975)
Q Consensus 586 ~vi~-~~~~i~p~~~~l~~~L~~~l~ 610 (975)
+.+. +-..+.|- .++..|.+.++
T Consensus 192 kAL~aMV~~vtp~--~~L~~L~~~~~ 215 (334)
T KOG2933|consen 192 KALVAMVNHVTPQ--KLLRKLIPILQ 215 (334)
T ss_pred HHHHHHHhccChH--HHHHHHHHHHh
Confidence 6555 55555542 34566665543
No 200
>PF06086 Pox_A30L_A26L: Orthopoxvirus A26L/A30L protein; InterPro: IPR009285 This family consists of several Orthopoxvirus A26L and A30L proteins. The Vaccinia A30L gene is regulated by a late promoter and encodes a protein of approximately 9 kDa. It is thought that the A30L protein is needed for vaccinia virus morphogenesis, specifically the association of the dense viroplasm with viral membranes [].
Probab=29.32 E-value=61 Score=32.45 Aligned_cols=48 Identities=19% Similarity=0.331 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHhcCC
Q 002048 58 QIRHAAAVNFKNHLRFRWAPASDRNSGPTLAPILDAEKDQIKSLIVGLMLTST 110 (975)
Q Consensus 58 ~vRq~Aai~lKn~I~~~W~~~~~~~~~~~~~~i~~e~K~~Ir~~ll~~l~~~~ 110 (975)
.+|-++.-.||+.|.++|...-.+. .+|+-++|..||+-+=..|.+.|
T Consensus 17 d~~~~~I~~F~slV~~~W~~~L~~~-----sCI~R~~RKiIRnViR~ym~s~p 64 (220)
T PF06086_consen 17 DVNVASIREFKSLVSETWNKPLNEN-----SCIPREDRKIIRNVIREYMKSAP 64 (220)
T ss_pred cCccchHHHHHHHHHHhcCCccccc-----cccCHHHHHHHHHHHHHHHHhCC
Confidence 4566777899999999999654432 38999999999998888877654
No 201
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=28.74 E-value=1.2e+02 Score=36.74 Aligned_cols=100 Identities=11% Similarity=0.114 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHH
Q 002048 415 TVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALK 494 (975)
Q Consensus 415 ~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~ 494 (975)
.+..++.+.+.+... ..+-..+-.+|.++|.++.. ...+ .+.|.+.... .....+|..|+|
T Consensus 486 ~~~~~l~~~l~~~~~--~~~~~~~~~~LkaLgN~g~~------------~~i~----~l~~~i~~~~-~~~~~~R~~Ai~ 546 (618)
T PF01347_consen 486 KYVPYLEQELKEAVS--RGDEEEKIVYLKALGNLGHP------------ESIP----VLLPYIEGKE-EVPHFIRVAAIQ 546 (618)
T ss_dssp GGTHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHT-G------------GGHH----HHHTTSTTSS--S-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh--ccCHHHHHHHHHHhhccCCc------------hhhH----HHHhHhhhcc-ccchHHHHHHHH
Confidence 344444444543222 23456778888899987421 1222 3344444431 246899999999
Q ss_pred HHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHH
Q 002048 495 FFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIE 535 (975)
Q Consensus 495 ~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~ 535 (975)
.+.+++...+......+++...+-= .+.-||+.|...|=
T Consensus 547 Alr~~~~~~~~~v~~~l~~I~~n~~--e~~EvRiaA~~~lm 585 (618)
T PF01347_consen 547 ALRRLAKHCPEKVREILLPIFMNTT--EDPEVRIAAYLILM 585 (618)
T ss_dssp TTTTGGGT-HHHHHHHHHHHHH-TT--S-HHHHHHHHHHHH
T ss_pred HHHHHhhcCcHHHHHHHHHHhcCCC--CChhHHHHHHHHHH
Confidence 9999977765444544444443322 25668988875544
No 202
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=28.73 E-value=9.6e+02 Score=29.27 Aligned_cols=158 Identities=19% Similarity=0.289 Sum_probs=80.2
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhhc
Q 002048 512 FPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLGVA 591 (975)
Q Consensus 512 ~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~~~ 591 (975)
+.-++..|.+++.-|.-.+-..+...+... ++ +.++..|+...-+. .+..+++.+.. ++
T Consensus 6 ~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~---------~~------~~l~~~l~~y~~~t---~s~~~~~il~~---~~ 64 (668)
T PF04388_consen 6 ITELLSLLESNDLSVLEEIKALLQELLNSD---------RE------PWLVNGLVDYYLST---NSQRALEILVG---VQ 64 (668)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhcc---------ch------HHHHHHHHHHHhhc---CcHHHHHHHHh---cC
Confidence 345667778887777777766666655432 11 13344444332222 22333333322 22
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCcc-hHHHHHHhhHHHHHHHHhccccc-chHH
Q 002048 592 EISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPS-LISAFEASILPSLQIILQNDVTE-FLPY 669 (975)
Q Consensus 592 ~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~~-~~~~l~~~l~P~i~~il~~~~~~-~~~~ 669 (975)
+ |+...++..|-..+ .++ ..+..++..++.+|+. .|. .+.-....+++-+..+|..|... .+..
T Consensus 65 ~---P~~K~~~~~l~~~~----~~~---~~Rl~~L~Ll~~~v~~----qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~ 130 (668)
T PF04388_consen 65 E---PHDKHLFDKLNDYF----VKP---SYRLQALTLLGHFVRS----QPPWLYKILQTPLFKSLLKCLQFDTSITVVSS 130 (668)
T ss_pred C---ccHHHHHHHHHHHH----cCc---hhHHHHHHHHHHHHhc----CCchHHHHhcChhHHHHHHHHhhcccHHHHHH
Confidence 2 44444444444333 232 2233444444444443 344 44444447777777777665432 3455
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHhhcCcccccc
Q 002048 670 AFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKR 704 (975)
Q Consensus 670 ~l~ll~~ll~~~~~~~~~~~~~lf~~l~~~~l~~~ 704 (975)
++-.+..++-..+..+++.+..||........|+.
T Consensus 131 al~~LimlLP~ip~~l~~~L~~Lf~If~Rl~~W~~ 165 (668)
T PF04388_consen 131 ALLVLIMLLPHIPSSLGPHLPDLFNIFGRLLSWER 165 (668)
T ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHHHHccc
Confidence 66667677666555466655555555544445763
No 203
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=28.62 E-value=8.6e+02 Score=29.35 Aligned_cols=54 Identities=15% Similarity=0.097 Sum_probs=44.3
Q ss_pred chhHhhHHHHHHHhhccC-----CHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHc
Q 002048 486 PMLKAGALKFFTMFRIQI-----PKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQ 539 (975)
Q Consensus 486 ~~Lr~ra~~~l~~f~~~~-----~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~ 539 (975)
+..-.|++.|+.+|...+ ..+....++..++....+++..||-..|.-|..+.+
T Consensus 56 esi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d 114 (892)
T KOG2025|consen 56 ESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSD 114 (892)
T ss_pred CCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhc
Confidence 455688899999987643 246788899999999999999999999998888776
No 204
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=28.52 E-value=83 Score=20.15 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=18.7
Q ss_pred hhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcC
Q 002048 487 MLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGA 521 (975)
Q Consensus 487 ~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~ 521 (975)
.+|.+|.+.+|++.. ...++.+..+|+|
T Consensus 2 ~vR~~aa~aLg~~~~-------~~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGD-------EEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCC-------HhHHHHHHHHhcC
Confidence 578899999998754 2344555555554
No 205
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=28.36 E-value=1.6e+02 Score=29.28 Aligned_cols=65 Identities=20% Similarity=0.120 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHhc----CCC-hHHHHHHHHHhcCcChHHHHHHHHHHHhhhhccc
Q 002048 9 QHLSQCFLHTLSPSPEPRRAAERSLAEMAD----RPN-YGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRW 75 (975)
Q Consensus 9 ~~l~~~L~~tls~d~~~r~~AE~~L~~~~~----~p~-f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W 75 (975)
.-+..+|+.++++|..+|..|=+-++..-+ +|. ....|..+.+++ +..+|..|.-.+|..-.||=
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~--~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSP--NPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCC--ChHHHHHHHHHHHHHHHHhH
Confidence 457788999999999999999998887665 674 778888777774 78999999999998877754
No 206
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=28.34 E-value=6.5e+02 Score=28.12 Aligned_cols=115 Identities=11% Similarity=0.110 Sum_probs=59.1
Q ss_pred HHhHHHHHHH-hhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHH
Q 002048 508 AFQFFPDLVR-FLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMR 586 (975)
Q Consensus 508 ~~~~~~~l~~-~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~ 586 (975)
+...++.+.. .|+++ ..||..|-+.++-++...+ +-..-.+-+++-++-.-+..-+. ...|.++.++-+-+
T Consensus 23 ~~~~~~~i~~~lL~~~-~~vraa~yRilRy~i~d~~------~l~~~~~l~id~~ii~SL~~~~~-~~~ER~QALkliR~ 94 (371)
T PF14664_consen 23 LSFFGERIQCMLLSDS-KEVRAAGYRILRYLISDEE------SLQILLKLHIDIFIIRSLDRDNK-NDVEREQALKLIRA 94 (371)
T ss_pred HHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCHH------HHHHHHHcCCchhhHhhhcccCC-ChHHHHHHHHHHHH
Confidence 3334444443 44544 8899888888887776532 11111122233333332222111 12366777777766
Q ss_pred HHhhccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHH
Q 002048 587 VLGVAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRR 635 (975)
Q Consensus 587 vi~~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~ 635 (975)
++...++....-..++..++.+. ..++ +.+...++|++..+.-.
T Consensus 95 ~l~~~~~~~~~~~~vvralvaia----e~~~-D~lr~~cletL~El~l~ 138 (371)
T PF14664_consen 95 FLEIKKGPKEIPRGVVRALVAIA----EHED-DRLRRICLETLCELALL 138 (371)
T ss_pred HHHhcCCcccCCHHHHHHHHHHH----hCCc-hHHHHHHHHHHHHHHhh
Confidence 66653333323344555555433 3333 45677888888776544
No 207
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=28.22 E-value=62 Score=31.38 Aligned_cols=39 Identities=21% Similarity=0.344 Sum_probs=28.8
Q ss_pred HHhhcC--CCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHH
Q 002048 516 VRFLGA--ESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLF 566 (975)
Q Consensus 516 ~~~L~~--~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~ 566 (975)
+.+|+. ++..||.+|..+|+.+ +.+++.-|+++++|.|-
T Consensus 75 LeLL~~~f~d~~VR~yAV~~L~~~------------~ddeL~~yLpQLVQaLk 115 (169)
T cd00869 75 LELLLPKFPDQEVRAHAVQWLARL------------SNDELLDYLPQLVQALK 115 (169)
T ss_pred HHHcCCcCCChHHHHHHHHHHHhC------------CHHHHHHHHHHHHHHHH
Confidence 344444 2678999999998862 24578899999999874
No 208
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=28.10 E-value=7.3e+02 Score=26.35 Aligned_cols=131 Identities=11% Similarity=0.191 Sum_probs=64.6
Q ss_pred HHhHHHHHHHhhcCC-CchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHH-HHHhcCCCCchhhHHHHHHHH
Q 002048 508 AFQFFPDLVRFLGAE-SNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTS-LFNAFKFPESEENQYIMKCIM 585 (975)
Q Consensus 508 ~~~~~~~l~~~L~~~-~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~-L~~ll~~~~~~~~~~l~~~l~ 585 (975)
++-.|.-+++.|-|. +.-.|-.|..+|+. .. .-..+.||.-..+.. +-+-+ .+-.++.+++
T Consensus 195 Lq~YF~kvisal~dEs~~~~r~aAl~sLr~---ds--------GlhQLvPYFi~f~~eqit~Nl------~nl~~LtTv~ 257 (450)
T COG5095 195 LQMYFDKVISALLDESDEQTRDAALESLRN---DS--------GLHQLVPYFIHFFNEQITKNL------KNLEKLTTVV 257 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---Cc--------cHHHHHHHHHHHHHHHHHHhh------hhHHHHHHHH
Confidence 444555555555443 44455445444432 11 134566765444433 22222 2223344554
Q ss_pred HHHh--hcc---chhhhHHHHHHHHHHHHH--HHHhCCCCCchhHHHHH-HHHHHHHHhhhcCcchHHHHHHhhHHHHHH
Q 002048 586 RVLG--VAE---ISNEVAAPCISGLTSILN--EVCKNPKSPIFNHYLFE-SVAVLVRRACQRDPSLISAFEASILPSLQI 657 (975)
Q Consensus 586 ~vi~--~~~---~i~p~~~~l~~~L~~~l~--~~~~~~~~~~~~~~~~e-~l~~li~~~~~~~~~~~~~l~~~l~P~i~~ 657 (975)
.++. ++. -+.||..+++..+..++- ..-..|+|.. |+.++ .-..++..+|++-+..|..+-+.+.-.+..
T Consensus 258 ~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe--~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllK 335 (450)
T COG5095 258 MMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHE--HYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLK 335 (450)
T ss_pred HHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchh--HHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHH
Confidence 4444 322 256888888777665441 2224555544 34444 335566677665566666655554444433
No 209
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=28.08 E-value=73 Score=31.02 Aligned_cols=39 Identities=28% Similarity=0.539 Sum_probs=29.8
Q ss_pred HHhhcC--CCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHH
Q 002048 516 VRFLGA--ESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLF 566 (975)
Q Consensus 516 ~~~L~~--~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~ 566 (975)
+.+|+. ++..||.+|...|+.+ +.+++.-|+++++|.|=
T Consensus 75 LeLL~~~f~d~~VR~yAV~~L~~~------------sd~eL~~yL~QLVQaLK 115 (171)
T cd00872 75 LELLDCNFPDEHVREFAVRCLEKL------------SDDELLQYLLQLVQVLK 115 (171)
T ss_pred HHHCCCcCCCHHHHHHHHHHHHhC------------CHHHHHHHHHHHHHHHH
Confidence 445554 3799999999988862 34589999999999874
No 210
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=27.76 E-value=3.8e+02 Score=30.80 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=46.9
Q ss_pred chhHhh--HHHHHHHhhccCCHhHHHhHHH-HHHHhhcCCCchHHHHHHHHHHHHHccc
Q 002048 486 PMLKAG--ALKFFTMFRIQIPKIHAFQFFP-DLVRFLGAESNVVHSYAASCIEKLLQVK 541 (975)
Q Consensus 486 ~~Lr~r--a~~~l~~f~~~~~~~~~~~~~~-~l~~~L~~~~~~V~~~Aa~aL~~~~~~~ 541 (975)
-++|+| |...+|.+...++.+.+..++. .++.+|+++...=|..|+..+..+....
T Consensus 99 ~v~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~ 157 (441)
T PF12054_consen 99 VVIRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKAC 157 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhC
Confidence 456655 5599999998888888888888 5999999998888999999999887765
No 211
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=27.63 E-value=6.5e+02 Score=25.38 Aligned_cols=117 Identities=13% Similarity=0.108 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHH-HHHHHHhhhcCCCccccCcccHHHHHHH
Q 002048 393 RRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIY-LVVSLATKKAGSTSISTDLVDVQSFFTS 471 (975)
Q Consensus 393 ~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~-~ig~ia~~~~~g~~~~~~~~~~~~~l~~ 471 (975)
.|.+|.+++...-...... -++.+...+.. -++|-.-|+... ++|.+... . +.+..
T Consensus 62 ~r~~al~~l~~~~~~~~~~----~~~~~~~~l~~-----~~~Wd~vD~~~~~i~g~~~~~--~------------~~~~~ 118 (208)
T cd07064 62 YQYVAIDLLRKYKKFLTPE----DLPLLEELITT-----KSWWDTVDSLAKVVGGILLAD--Y------------PEFEP 118 (208)
T ss_pred HHHHHHHHHHHHHhcCCHH----HHHHHHHHHcC-----CchHHHHHHHHHHHhHHHHhC--C------------hhHHH
Confidence 4778877776644333222 23444444432 357988886443 33433211 0 01112
Q ss_pred hcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHc
Q 002048 472 VIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQ 539 (975)
Q Consensus 472 ~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~ 539 (975)
.+.....+ ++.++|+.|+...-.|..... ...++..+..+++|++.-||-..+++|+.+..
T Consensus 119 ~l~~W~~s----~~~W~rR~ai~~~l~~~~~~~---~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k 179 (208)
T cd07064 119 VMDEWSTD----ENFWLRRTAILHQLKYKEKTD---TDLLFEIILANLGSKEFFIRKAIGWALREYSK 179 (208)
T ss_pred HHHHHHcC----CcHHHHHHHHHHHHHHHHccC---HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhc
Confidence 22222333 578999999876556666533 34556677788999999999988999998654
No 212
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=27.11 E-value=5.9e+02 Score=24.76 Aligned_cols=63 Identities=13% Similarity=0.114 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcc--cCC-CCCCchHHHHHHHhcccccCCChhHHhHHHHHHHHHH
Q 002048 97 QIKSLIVGLMLTST--PRIQSQLSEALVVVGNH--DFP-KHWPTLLPELIANLKDAAQSNNYVSINGILGTANSIF 167 (975)
Q Consensus 97 ~Ir~~ll~~l~~~~--~~ir~qla~~i~~Ia~~--D~P-~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i~ 167 (975)
.||..++.+|-... ...-+-++.+++.+|.. ++| +.|++|.+-+.+.-. . ++ ..|..++..+.
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~~-~----e~---~kA~~IF~~L~ 70 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLSE-N----EP---VKAFHIFICLP 70 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhhc-c----ch---HHHHHHHHhCC
Confidence 47888888887753 34556666666666653 456 689999988777542 2 22 45665555543
No 213
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=26.93 E-value=5e+02 Score=31.06 Aligned_cols=71 Identities=14% Similarity=0.143 Sum_probs=56.2
Q ss_pred HHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhH-HHhHHHHHHHhhcCCCchHHHHHHHHHHHHHcc
Q 002048 466 QSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIH-AFQFFPDLVRFLGAESNVVHSYAASCIEKLLQV 540 (975)
Q Consensus 466 ~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~-~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~ 540 (975)
..-+..+|++.|.++ ..-+|.+-+..+-+|..+++++. -.++||.+...+.|++..+|..+..++..++..
T Consensus 328 q~~i~p~l~kLF~~~----Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~k 399 (690)
T KOG1243|consen 328 QVRIIPVLLKLFKSP----DRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPK 399 (690)
T ss_pred ccchhhhHHHHhcCc----chHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhh
Confidence 344555667777773 57789999999999999998654 667999999999999999998888877765543
No 214
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=26.93 E-value=85 Score=31.04 Aligned_cols=63 Identities=19% Similarity=0.157 Sum_probs=40.9
Q ss_pred cchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHH
Q 002048 485 FPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTS 564 (975)
Q Consensus 485 ~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~ 564 (975)
.+.-...+...+.+|... + ..++++.+.... ++..||.+|+..|+. .+.+++.-|+++++|.
T Consensus 57 ~~~e~~e~~~ll~~W~~~-~---~~~aL~LL~~~~--~~~~Vr~yAV~~L~~------------~~d~~l~~yLpQLVQa 118 (184)
T smart00145 57 DADEVAQALSLLKKWAPL-D---PEDALELLSPKF--PDPFVRAYAVERLES------------ASDEELLLYLLQLVQA 118 (184)
T ss_pred CHHHHHHHHHHHHcCCCC-C---HHHHHHHhCccC--CCHHHHHHHHHHHHh------------CCHHHHHHHHHHHHHH
Confidence 344455667777777642 2 222333332222 278999999988875 2356899999999998
Q ss_pred H
Q 002048 565 L 565 (975)
Q Consensus 565 L 565 (975)
|
T Consensus 119 L 119 (184)
T smart00145 119 L 119 (184)
T ss_pred H
Confidence 7
No 215
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=26.16 E-value=1e+03 Score=27.07 Aligned_cols=113 Identities=9% Similarity=-0.067 Sum_probs=60.5
Q ss_pred HHhcCCChHHHHHHHHHHHHHhcCCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCCCCcCCCCHHHH
Q 002048 16 LHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPTLAPILDAEK 95 (975)
Q Consensus 16 ~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~~~~~i~~e~K 95 (975)
...-+++.++|..+=+.|..+ +.|+....|...+.+. ++.+|-.+.=.+.+ .. ..+
T Consensus 93 ~~L~d~~~~vr~aaa~ALg~i-~~~~a~~~L~~~L~~~--~p~vR~aal~al~~-----r~-------------~~~--- 148 (410)
T TIGR02270 93 AVLQAGPEGLCAGIQAALGWL-GGRQAEPWLEPLLAAS--EPPGRAIGLAALGA-----HR-------------HDP--- 148 (410)
T ss_pred HHhcCCCHHHHHHHHHHHhcC-CchHHHHHHHHHhcCC--ChHHHHHHHHHHHh-----hc-------------cCh---
Confidence 333445555666666666432 3455555566655432 44555443322222 00 000
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccCCChhHHhHHHHHHHHH
Q 002048 96 DQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSI 166 (975)
Q Consensus 96 ~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i 166 (975)
-..+...+.+++..+|.....+++.+.+ ++..+.|...+.+. |+....+|+..+..+
T Consensus 149 ---~~~L~~~L~d~d~~Vra~A~raLG~l~~-------~~a~~~L~~al~d~----~~~VR~aA~~al~~l 205 (410)
T TIGR02270 149 ---GPALEAALTHEDALVRAAALRALGELPR-------RLSESTLRLYLRDS----DPEVRFAALEAGLLA 205 (410)
T ss_pred ---HHHHHHHhcCCCHHHHHHHHHHHHhhcc-------ccchHHHHHHHcCC----CHHHHHHHHHHHHHc
Confidence 1134444555566777777777777653 34666677777766 777777777666433
No 216
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=26.05 E-value=1.3e+02 Score=36.58 Aligned_cols=75 Identities=24% Similarity=0.241 Sum_probs=56.8
Q ss_pred chhHhhHHHHHHHhhcc----CCHhHHHhHHHHHHHhhc-CCCchHHHHHHHHHHHHHccccCCCccccccccccchHHH
Q 002048 486 PMLKAGALKFFTMFRIQ----IPKIHAFQFFPDLVRFLG-AESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSV 560 (975)
Q Consensus 486 ~~Lr~ra~~~l~~f~~~----~~~~~~~~~~~~l~~~L~-~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~ 560 (975)
+--|-.++-++|.|... +..=.-..+|+.++.||. |.+.+|-..|..+|-.++-. .+..+.||++.
T Consensus 82 ~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~---------ip~~l~~~L~~ 152 (668)
T PF04388_consen 82 PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH---------IPSSLGPHLPD 152 (668)
T ss_pred chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc---------ccchhhHHHHH
Confidence 44677888888888642 222223467888888887 56888888888888887764 36788999999
Q ss_pred HHHHHHHhc
Q 002048 561 LMTSLFNAF 569 (975)
Q Consensus 561 il~~L~~ll 569 (975)
++..+..++
T Consensus 153 Lf~If~Rl~ 161 (668)
T PF04388_consen 153 LFNIFGRLL 161 (668)
T ss_pred HHHHHHHHH
Confidence 999999888
No 217
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=25.55 E-value=1.1e+03 Score=27.17 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=51.9
Q ss_pred chhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCC----HhHHHh
Q 002048 435 WKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIP----KIHAFQ 510 (975)
Q Consensus 435 w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~----~~~~~~ 510 (975)
++.|-+|-.++|.+...... ..+..++...+.+.|++ .+..=|--|+.++..|..... ......
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~--------~~~~~~~~~~L~~~L~S----~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~ 168 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPE--------SSLQEIFQPLLLPYLNS----PSATQRLLAALVLEEWAKACKERNPSPPPQA 168 (441)
T ss_pred HHHHHHHHHHHHHHHHhccc--------chHHHHHHHHHHHHhcc----hhHHHHHHHHHHHHHHHHhCccccCCccHHH
Confidence 56788888899998877622 23556666678888887 477888889999999976432 111345
Q ss_pred HHHHHHHhhcCC
Q 002048 511 FFPDLVRFLGAE 522 (975)
Q Consensus 511 ~~~~l~~~L~~~ 522 (975)
+-+.+..+|.++
T Consensus 169 l~~~L~~~L~~~ 180 (441)
T PF12054_consen 169 LSPRLLEILENP 180 (441)
T ss_pred HHHHHHHHHcCC
Confidence 556666777744
No 218
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=25.18 E-value=8.9e+02 Score=26.15 Aligned_cols=123 Identities=11% Similarity=0.060 Sum_probs=64.1
Q ss_pred CChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002048 40 PNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPTLAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSE 119 (975)
Q Consensus 40 p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~~~~~i~~e~K~~Ir~~ll~~l~~~~~~ir~qla~ 119 (975)
+++...++.++...+.+..+.+.....+=..+...=... +-+. .....+....=..++..+.+++..|+.+.+.
T Consensus 54 ~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~-~~~~-----~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~ 127 (312)
T PF03224_consen 54 DQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRV-ELFL-----ELAKQDDSDPYSPFLKLLDRNDSFIQLKAAF 127 (312)
T ss_dssp --------HHHHHH---HHHHHHHHHHHHHHHH-SSSSH-HHHH-----HHHH-TTH--HHHHHHH-S-SSHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHH-HHHH-----HhcccccchhHHHHHHHhcCCCHHHHHHHHH
Confidence 367777777777653477888888888888776432110 0000 0111111113345556555667889999999
Q ss_pred HHHHHhcccCCCCCC---chHHHHHHHhcccccCCChhHHhHHHHHHHHHHH
Q 002048 120 ALVVVGNHDFPKHWP---TLLPELIANLKDAAQSNNYVSINGILGTANSIFK 168 (975)
Q Consensus 120 ~i~~Ia~~D~P~~Wp---~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i~k 168 (975)
+++.++..+-+..=. +.++.+++.+.+...+.+.+.+..++.+|..+.+
T Consensus 128 iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~ 179 (312)
T PF03224_consen 128 ILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR 179 (312)
T ss_dssp HHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT
T ss_pred HHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC
Confidence 999999987654444 6778888877653211144556889999999875
No 219
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=24.71 E-value=1.1e+03 Score=27.27 Aligned_cols=67 Identities=9% Similarity=0.064 Sum_probs=46.1
Q ss_pred HHHHHhhccCCHhHHHhHHHHHHHhhcCC--CchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcC
Q 002048 494 KFFTMFRIQIPKIHAFQFFPDLVRFLGAE--SNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFK 570 (975)
Q Consensus 494 ~~l~~f~~~~~~~~~~~~~~~l~~~L~~~--~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~ 570 (975)
.++.+..+.++++.+.-++..+-.- +. .+.+.-|.|+-+.++++.+. .++..|.++.|+..+..|..
T Consensus 301 HViQK~ie~~p~~~~~Fiv~~f~~~--~~~~~ls~~~YGCRVIQr~lE~c~--------~~~~~~i~~ei~~~~~~L~~ 369 (503)
T KOG1488|consen 301 HVIQKCIETLPPDAWQFIVDFFSGD--DNLLELSTHKYGCRVIQRILEHCS--------EDQKQPLMEEIIRNCDQLAQ 369 (503)
T ss_pred eehhhhhhccChHHHHHHHHHhcCC--CceeEeeccCcccHHHHHHhhcCC--------hHhhhHHHHHHHHHHHHHHh
Confidence 4455666666666665555444332 12 57778899999999999863 56677788888888887763
No 220
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=24.71 E-value=79 Score=30.13 Aligned_cols=38 Identities=26% Similarity=0.487 Sum_probs=29.2
Q ss_pred HHhhcC--CCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHH
Q 002048 516 VRFLGA--ESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSL 565 (975)
Q Consensus 516 ~~~L~~--~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L 565 (975)
+.+|+. ++..||-+|+..|+.+ +.+++.-|+++++|.|
T Consensus 75 L~LL~~~~~~~~vr~yAv~~L~~~------------~~~~l~~ylpQLVQaL 114 (152)
T cd00864 75 LELLSPKYPDPVVRQYAVRVLESA------------SDDELLLYLPQLVQAL 114 (152)
T ss_pred HHHcCCcCCCHHHHHHHHHHHHhC------------CHHHHHHHHHHHHHHH
Confidence 344554 3699999999988862 3558899999999987
No 221
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.62 E-value=1.4e+03 Score=28.13 Aligned_cols=182 Identities=15% Similarity=0.178 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHhHHHHH-hhHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHhh-chhhhhhcccCCCchhhHHHH
Q 002048 280 RAAVCENISLYMKMNEEEFQ-GYLNDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNV-STSVHHTLFAGEGVIPQICQN 357 (975)
Q Consensus 280 k~~~~~~l~~~~~~~~~~f~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~fl~~~-~~~~~~~~~~~~~~l~~l~~~ 357 (975)
|+.++.-+..+..+|..... .-++++++ .+. .++...+++..+++-+..+ ..........
T Consensus 40 RR~A~rgLKa~srkYR~~Vga~Gmk~li~----vL~---~D~~D~E~ik~~LdTl~il~~~dd~~~v~d----------- 101 (970)
T KOG0946|consen 40 RRDAVRGLKAFSRKYREEVGAQGMKPLIQ----VLQ---RDYMDPEIIKYALDTLLILTSHDDSPEVMD----------- 101 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHH----HHh---hccCCHHHHHHHHHHHHHHHhcCcchhhcc-----------
Confidence 45778888888888886553 23333333 222 2233456777777777665 3222111110
Q ss_pred hhcccCCCChhhHHHHhhCHHHHHhhc---------CCCCcchhhhHHHHHHHHHHHHHhhhhhHHHHHHH------HHH
Q 002048 358 IVIPNVRLRDEDEELFEMNYVEFIRRD---------MEGSDVDTRRRIACELLKGIATHYRQHVMETVSVQ------IQN 422 (975)
Q Consensus 358 li~~~l~l~~~d~e~we~dp~efv~~~---------~d~~d~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~------i~~ 422 (975)
.-. ..+|..+|=.| .|+..+ .+. +.+-+|..|..++.++..++|-.+-..++.+ +..
T Consensus 102 ----ds~-qsdd~g~~iae--~fik~qd~I~lll~~~e~-~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmd 173 (970)
T KOG0946|consen 102 ----DST-QSDDLGLWIAE--QFIKNQDNITLLLQSLEE-FDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMD 173 (970)
T ss_pred ----cch-hhhHHHHHHHH--HHHcCchhHHHHHHHHHh-hchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHH
Confidence 000 11223333211 122211 111 2355899999999999999987665554432 122
Q ss_pred HHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHH
Q 002048 423 LLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTM 498 (975)
Q Consensus 423 ~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~ 498 (975)
.|. + + .--.|+.+++++..+.. +.+++...+-|++.|... +.-+...+....+++--.|+.++-.
T Consensus 174 lL~----D-s-rE~IRNe~iLlL~eL~k----~n~~IQKlVAFENaFerL-fsIIeeEGg~dGgIVveDCL~ll~N 238 (970)
T KOG0946|consen 174 LLR----D-S-REPIRNEAILLLSELVK----DNSSIQKLVAFENAFERL-FSIIEEEGGLDGGIVVEDCLILLNN 238 (970)
T ss_pred HHh----h-h-hhhhchhHHHHHHHHHc----cCchHHHHHHHHHHHHHH-HHHHHhcCCCCCcchHHHHHHHHHH
Confidence 222 1 1 11346666777766643 323333345566666432 2222221111245787888877765
No 222
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=24.12 E-value=4.6e+02 Score=32.98 Aligned_cols=58 Identities=12% Similarity=0.010 Sum_probs=45.4
Q ss_pred CcchhHhhHHHHHHH-hhccCC---HhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccc
Q 002048 484 AFPMLKAGALKFFTM-FRIQIP---KIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVK 541 (975)
Q Consensus 484 ~~~~Lr~ra~~~l~~-f~~~~~---~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~ 541 (975)
++|+||-=+|.++|+ |.+... .-....+...+...|.|+.+-||..|.-||..|+..-
T Consensus 612 ~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 612 PEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred ccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 479999999999998 443211 1234556677788899999999999999999999863
No 223
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=24.11 E-value=6.3e+02 Score=24.05 Aligned_cols=55 Identities=13% Similarity=0.080 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHhccCCCCcc-----hHHHHHHHHHHHhh
Q 002048 282 AVCENISLYMKMNEEEFQGYLNDFALAVWTLLGNVSQSSSR-----DSLAVTAIKFLTNV 336 (975)
Q Consensus 282 ~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~l~fl~~~ 336 (975)
..|+.++.+++++..-|.+|...+++.+..+|......... ..+....+.-|..|
T Consensus 86 tfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~L~~~~~~~~~~~~~~~~L~~~vL~~L~~~ 145 (153)
T PF08146_consen 86 TFYRLLNALAEKLKSLFTPYFSYLLDNAVDLLKQFNSSKTESKSKSWELWRLVLSTLQKC 145 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHH
Confidence 68889999999999999999999999999888775432211 35666666666655
No 224
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=22.88 E-value=1.2e+03 Score=26.89 Aligned_cols=53 Identities=19% Similarity=0.229 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHh
Q 002048 393 RRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLAT 450 (975)
Q Consensus 393 ~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~ 450 (975)
-|..|.+=+....+.|+-...+.+...+..++. ++..-..|.+++.++.++..
T Consensus 6 ~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~-----~~~p~e~R~~~~~ll~~~i~ 58 (464)
T PF11864_consen 6 ERIKAAEELCESIQKYPLSSIEEIWYAAKDLID-----PNQPSEARRAALELLIACIK 58 (464)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcC-----CCCCHHHHHHHHHHHHHHHH
Confidence 344444444444555554555666666666664 22234568888888887754
No 225
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=22.84 E-value=6.9e+02 Score=24.02 Aligned_cols=102 Identities=12% Similarity=0.140 Sum_probs=55.4
Q ss_pred chHHHHHHHHccCccchhccC----ch----HHHHHHHHHhhcCCCCc--chHHHHHHHHHHhcchhhHhhhHHHHHHHH
Q 002048 710 ALVRLLQAFLQKVPREIAQEG----KL----REVLGIFNMLVLSPSTD--EQGFYVLNTIVESLEYGVIAQFVPHIWGVL 779 (975)
Q Consensus 710 ~~~~~L~~~i~~~~~~~~~~~----~~----~~il~i~~~ll~~~~~~--~~a~~ll~~ii~~~~~~~~~~~l~~il~~~ 779 (975)
-+++++.+.+..++..|.+.+ .. +.++..+.+.+.+.... ..+++++..++.++. ..+..-++.++..+
T Consensus 41 l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~-~~Lk~ele~~l~~i 119 (168)
T PF12783_consen 41 LSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFR-SHLKLELEVFLSHI 119 (168)
T ss_pred HHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 356777777777777766321 11 22222222222222222 336688888888873 56676778888888
Q ss_pred HHHhhcCchhh-HHHHHHHHHHHHHHHhChHHHHH
Q 002048 780 FTRLQNKRTVK-FVKSLLIFMSLFLVKHGPENLVN 813 (975)
Q Consensus 780 l~~L~~~~~~~-~~~~~i~~~~~~~~~~~~~~~l~ 813 (975)
+.++...++.+ ..|.+++.+..-. ..+|..+++
T Consensus 120 ~~~il~~~~~~~~~k~~~Le~l~~l-~~~p~~l~~ 153 (168)
T PF12783_consen 120 ILRILESDNSSLWQKELALEILREL-CKDPQFLVD 153 (168)
T ss_pred HHHHHccCCCcHHHHHHHHHHHHHH-HhChhHHHH
Confidence 88777666532 2344444333222 245654444
No 226
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=22.17 E-value=2.2e+03 Score=29.71 Aligned_cols=239 Identities=10% Similarity=0.100 Sum_probs=114.0
Q ss_pred hHHHHHHHhhcC-CCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHH
Q 002048 510 QFFPDLVRFLGA-ESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVL 588 (975)
Q Consensus 510 ~~~~~l~~~L~~-~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi 588 (975)
.++..+...+.. .+..||.....|+..++..+ .+.++.--..++.-+-....+. .+.+++.-..++
T Consensus 1182 efLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~---------~~nIkSGWktIF~VLs~aa~d~----~e~iV~lAFetl 1248 (1780)
T PLN03076 1182 EFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSR---------VNNVKSGWKSMFMVFTTAAYDD----HKNIVLLAFEII 1248 (1780)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH---------HhhhhcCcHHHHHHHHHHHhCc----cHHHHHHHHHHH
Confidence 445555554544 37789999999999887754 3456666666666665444332 233333323333
Q ss_pred h--hccchhhhH----HHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcC----------------------
Q 002048 589 G--VAEISNEVA----APCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRD---------------------- 640 (975)
Q Consensus 589 ~--~~~~i~p~~----~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~---------------------- 640 (975)
. +.+.+ ++. ......++.++.+.+++..+...+-..++.+..+...+.+..
T Consensus 1249 ~~I~~d~f-~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~ 1327 (1780)
T PLN03076 1249 EKIIREYF-PYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKD 1327 (1780)
T ss_pred HHHHHhhh-hhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 3 33322 111 123344444555555444333333333333333322221000
Q ss_pred -cc------hHHHHHHhhHHHHHHH---HhcccccchHHHHHHHHHHHHhcCCCCchhHH-HHHHhhcCccc--------
Q 002048 641 -PS------LISAFEASILPSLQII---LQNDVTEFLPYAFQLLAQLIELNRPPLSSNYM-QIFNLLLSPDS-------- 701 (975)
Q Consensus 641 -~~------~~~~l~~~l~P~i~~i---l~~~~~~~~~~~l~ll~~ll~~~~~~~~~~~~-~lf~~l~~~~l-------- 701 (975)
++ ........-+|++... ...+-.+.-..+++.|=.++......+++.+| .+|..++-|..
T Consensus 1328 ~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~ 1407 (1780)
T PLN03076 1328 GKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAID 1407 (1780)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 00 0112234456666653 22122245556776665555555555899888 44443333210
Q ss_pred ----c--------------ccCCCc-cchHHHHHHHHccCccchhc-cCchHHHHHHHHHhhcCCCCc---chHHHHHHH
Q 002048 702 ----W--------------KRSSNV-PALVRLLQAFLQKVPREIAQ-EGKLREVLGIFNMLVLSPSTD---EQGFYVLNT 758 (975)
Q Consensus 702 ----~--------------~~~~~l-~~~~~~L~~~i~~~~~~~~~-~~~~~~il~i~~~ll~~~~~~---~~a~~ll~~ 758 (975)
+ +....+ ..+..+|++.+..-...|-. ++.+..++.++..++..+ ++ ..|...+..
T Consensus 1408 ~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~-n~~la~ig~~~l~~ 1486 (1780)
T PLN03076 1408 PSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRP-HQSLAGIGIAAFVR 1486 (1780)
T ss_pred cccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHH
Confidence 0 001122 45555555555554443322 135677777777777643 33 335555555
Q ss_pred HHHhc
Q 002048 759 IVESL 763 (975)
Q Consensus 759 ii~~~ 763 (975)
++...
T Consensus 1487 li~~n 1491 (1780)
T PLN03076 1487 LMSNA 1491 (1780)
T ss_pred HHHHh
Confidence 55543
No 227
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=22.08 E-value=1.1e+03 Score=25.97 Aligned_cols=176 Identities=11% Similarity=0.154 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHhcccCC-----------CCCCchHHHHHHHhcccccCCChhHHhHHHHHHHHHHHhhhccccchhhh
Q 002048 112 RIQSQLSEALVVVGNHDFP-----------KHWPTLLPELIANLKDAAQSNNYVSINGILGTANSIFKKFRYQFKTNDLL 180 (975)
Q Consensus 112 ~ir~qla~~i~~Ia~~D~P-----------~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i~k~~~~~~~~~~~~ 180 (975)
-.|+.++.+.+.+.|.... .+||+++..|+....++ +.....|.+ |.+.+| + +.+
T Consensus 91 EsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~----dial~~g~m--lRec~k-~------e~l- 156 (335)
T PF08569_consen 91 ESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENP----DIALNCGDM--LRECIK-H------ESL- 156 (335)
T ss_dssp HHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGST----TTHHHHHHH--HHHHTT-S------HHH-
T ss_pred cccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCc----cccchHHHH--HHHHHh-h------HHH-
Confidence 3666666666666665322 45789999998888766 544333322 333332 1 111
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhcccCCCchHHHHhHHHHHHHHHHHhc
Q 002048 181 LDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFEDHMREWMTEFKKYLT 260 (975)
Q Consensus 181 ~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~~~lp~~~~~~~~~~~~~~~~~l~ 260 (975)
.+.++. -+.+..+|.. + + .++-+....++.+++-++..-+.++ .+++..+...++..+.++++
T Consensus 157 --~~~iL~--~~~f~~ff~~----~-~----~~~Fdiasdaf~t~~~llt~hk~~~----a~fl~~n~d~ff~~~~~Ll~ 219 (335)
T PF08569_consen 157 --AKIILY--SECFWKFFKY----V-Q----LPNFDIASDAFSTFKELLTRHKKLV----AEFLSNNYDRFFQKYNKLLE 219 (335)
T ss_dssp --HHHHHT--SGGGGGHHHH----T-T----SSSHHHHHHHHHHHHHHHHSSHHHH----HHHHHHTHHHHHHHHHHHCT
T ss_pred --HHHHhC--cHHHHHHHHH----h-c----CCccHhHHHHHHHHHHHHhccHHHH----HHHHHHHHHHHHHHHHHHcc
Confidence 111222 1122222221 1 1 2233444455556555554433333 37888889888888888776
Q ss_pred ccCCcccCCCCcCchHHHHHHHHHHHHHHHHH-Hh-HHHHHhhH--HHHHHHHHHHHhccCCCCcchHHHHHHHHHHHhh
Q 002048 261 TNYPALESTSDGLGLVDGLRAAVCENISLYMK-MN-EEEFQGYL--NDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNV 336 (975)
Q Consensus 261 ~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~-~~-~~~f~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~l~fl~~~ 336 (975)
.++ .-.|.+..+.|..+.. +. .+.+..|+ +..+..+.+++.. +...+...|+-.++-.
T Consensus 220 s~N-------------YvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d-----~sk~Iq~eAFhvFKvF 281 (335)
T PF08569_consen 220 SSN-------------YVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRD-----KSKNIQFEAFHVFKVF 281 (335)
T ss_dssp -SS-------------HHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT------S-HHHHHHHHHHHHHH
T ss_pred CCC-------------eEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcC-----cchhhhHHHHHHHHHH
Confidence 421 4577788888877753 22 12223333 3445555555543 2345555555555543
No 228
>PF03685 UPF0147: Uncharacterised protein family (UPF0147); InterPro: IPR005354 The proteins in this entry are functionally uncharacterised.; PDB: 2QZG_C 2QSB_A.
Probab=21.56 E-value=1.8e+02 Score=24.47 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHhc
Q 002048 7 TLQHLSQCFLHTLSPS---PEPRRAAERSLAEMAD 38 (975)
Q Consensus 7 ~~~~l~~~L~~tls~d---~~~r~~AE~~L~~~~~ 38 (975)
...+..+.|....+-+ .++|+.|++....+..
T Consensus 7 ~i~~~~~~L~~I~~D~sVPRNIRr~a~ea~~~L~~ 41 (85)
T PF03685_consen 7 KIKQAIQMLERIINDTSVPRNIRRAAEEAKEILNN 41 (85)
T ss_dssp HHHHHHHHHHHHHT-TTS-HHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhC
Confidence 3455555665544322 5789999988877654
No 229
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=21.40 E-value=2.1e+02 Score=26.59 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=36.1
Q ss_pred chhHhhHHHHHHHhhccCCHhHHH--hHHHHHHHhhcCCCchHHHHHHHHH
Q 002048 486 PMLKAGALKFFTMFRIQIPKIHAF--QFFPDLVRFLGAESNVVHSYAASCI 534 (975)
Q Consensus 486 ~~Lr~ra~~~l~~f~~~~~~~~~~--~~~~~l~~~L~~~~~~V~~~Aa~aL 534 (975)
.-+...++.+++.|..+++.+... .+++.+.+.|++++. +..|+.+|
T Consensus 100 ~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPEL--REAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHH--HHHHHHhC
Confidence 667788999999998887765543 389999999977765 77888765
No 230
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=21.40 E-value=1.8e+02 Score=29.34 Aligned_cols=87 Identities=13% Similarity=0.109 Sum_probs=57.8
Q ss_pred CCCchhHHHH-HHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHh
Q 002048 432 VANWKDKDCA-IYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQ 510 (975)
Q Consensus 432 ~~~w~~keaa-l~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~ 510 (975)
-++|-.-|.. -.+++.+.... +.+...+.....+ .+++.|+.++.++-.+... .....
T Consensus 97 ~~~W~~~D~~~~~~~~~~~~~~--------------~~~~~~~~~W~~s----~~~w~rR~~~v~~~~~~~~---~~~~~ 155 (213)
T PF08713_consen 97 IDNWATCDSLCSKLLGPLLKKH--------------PEALELLEKWAKS----DNEWVRRAAIVMLLRYIRK---EDFDE 155 (213)
T ss_dssp CCCHHHHHHHTHHHHHHHHHHH--------------GGHHHHHHHHHHC----SSHHHHHHHHHCTTTHGGG---CHHHH
T ss_pred CCcchhhhHHHHHHHHHHHHhh--------------HHHHHHHHHHHhC----CcHHHHHHHHHHHHHHHHh---cCHHH
Confidence 4689888877 44556543211 0111223333444 5788888887776666554 66788
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHc
Q 002048 511 FFPDLVRFLGAESNVVHSYAASCIEKLLQ 539 (975)
Q Consensus 511 ~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~ 539 (975)
++..+..++.|++.-||...+++|+.+..
T Consensus 156 ~l~~~~~~~~d~~~~vq~ai~w~L~~~~~ 184 (213)
T PF08713_consen 156 LLEIIEALLKDEEYYVQKAIGWALREIGK 184 (213)
T ss_dssp HHHHHHHCTTGS-HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999997554
No 231
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=21.15 E-value=7.4e+02 Score=23.77 Aligned_cols=106 Identities=11% Similarity=0.128 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHh------hHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHhhchhhhhhcccCCCc
Q 002048 277 DGLRAAVCENISLYMKMNEEEFQG------YLNDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNVSTSVHHTLFAGEGV 350 (975)
Q Consensus 277 ~~~k~~~~~~l~~~~~~~~~~f~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~~~~ 350 (975)
.+.|.-+.+.+....+.++..|.. +..-+-..++..+.+...... ..+...+++.+..+ -..++..+ +..
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l-~~~~~~~L--k~e 111 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTL-LSRFRSHL--KLE 111 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHH-HHHHHHHH--HHH
Confidence 456667778888888888877762 222222233333333222222 44556666666666 12233333 445
Q ss_pred hhhHHHHhhcccCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHHHH
Q 002048 351 IPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATH 407 (975)
Q Consensus 351 l~~l~~~li~~~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~~ 407 (975)
+..++..++.+.+. .+.+ ....|..+.+.+..+++.
T Consensus 112 le~~l~~i~~~il~--------------------~~~~-~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 112 LEVFLSHIILRILE--------------------SDNS-SLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHHHHc--------------------cCCC-cHHHHHHHHHHHHHHHhC
Confidence 55556555554441 1111 334678888888888864
No 232
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=21.11 E-value=9.8e+02 Score=25.18 Aligned_cols=146 Identities=13% Similarity=0.198 Sum_probs=81.5
Q ss_pred HHHhHHHHHHHhhcCCC-c---hHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHH
Q 002048 507 HAFQFFPDLVRFLGAES-N---VVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMK 582 (975)
Q Consensus 507 ~~~~~~~~l~~~L~~~~-~---~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~ 582 (975)
.+...+|.+++.+.++. + .--..+|.+|...++.. =.|.+..+|..+-+- .. + ..+.-++
T Consensus 108 ~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~------------~~~~La~il~~ya~~--~f-r-~~~dfl~ 171 (262)
T PF14225_consen 108 LLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ------------GLPNLARILSSYAKG--RF-R-DKDDFLS 171 (262)
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhC------------CCccHHHHHHHHHhc--CC-C-CHHHHHH
Confidence 35566788888887766 1 23346677777776532 234566677766532 22 2 2333333
Q ss_pred HHHHHHhhccchh-hhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhc
Q 002048 583 CIMRVLGVAEISN-EVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQN 661 (975)
Q Consensus 583 ~l~~vi~~~~~i~-p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~ 661 (975)
.+.+. +.+... .+...++..|..++ .|. -+-++..+++++..++..+ .-... ....++-++...++.
T Consensus 172 ~v~~~--l~~~f~P~~~~~~l~~Ll~lL----~n~-~~w~~~~~L~iL~~ll~~~-d~~~~----~~~dlispllrlL~t 239 (262)
T PF14225_consen 172 QVVSY--LREAFFPDHEFQILTFLLGLL----ENG-PPWLRRKTLQILKVLLPHV-DMRSP----HGADLISPLLRLLQT 239 (262)
T ss_pred HHHHH--HHHHhCchhHHHHHHHHHHHH----hCC-cHHHHHHHHHHHHHHhccc-cCCCC----cchHHHHHHHHHhCC
Confidence 33333 334332 23344555555544 221 1235568888888888876 32211 233344444444544
Q ss_pred ccccchHHHHHHHHHHHHhcCC
Q 002048 662 DVTEFLPYAFQLLAQLIELNRP 683 (975)
Q Consensus 662 ~~~~~~~~~l~ll~~ll~~~~~ 683 (975)
++..+|++++...+..+.+
T Consensus 240 ---~~~~eAL~VLd~~v~~s~s 258 (262)
T PF14225_consen 240 ---DLWMEALEVLDEIVTRSGS 258 (262)
T ss_pred ---ccHHHHHHHHHHHHhhccc
Confidence 7899999999998887654
No 233
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=20.92 E-value=3.4e+02 Score=24.14 Aligned_cols=81 Identities=9% Similarity=-0.036 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCcc-ccCcccHHHHHHHhcccccCCCCCCCcchhHh
Q 002048 412 VMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSI-STDLVDVQSFFTSVIVPELQSPDVNAFPMLKA 490 (975)
Q Consensus 412 ~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~-~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ 490 (975)
....++..+...++ +.+|+.+-=||.++-.+...+.+.+.. +... .+...+.....+..... ..+..+|.
T Consensus 34 ~~~~~~~~l~kRl~------~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~-~~~~~l~~~~~~~~~~~--~~~~~Vr~ 104 (115)
T cd00197 34 GPKEAVDAIKKRIN------NKNPHVVLKALTLLEYCVKNCGERFHQEVASN-DFAVELLKFDKSKLLGD--DVSTNVRE 104 (115)
T ss_pred cHHHHHHHHHHHhc------CCcHHHHHHHHHHHHHHHHHccHHHHHHHHHh-HHHHHHHHhhccccccC--CCChHHHH
Confidence 34557777777775 358999999999998887665222210 1110 11111111111222221 24789999
Q ss_pred hHHHHHHHhhc
Q 002048 491 GALKFFTMFRI 501 (975)
Q Consensus 491 ra~~~l~~f~~ 501 (975)
++..++..|++
T Consensus 105 k~~~l~~~w~~ 115 (115)
T cd00197 105 KAIELVQLWAS 115 (115)
T ss_pred HHHHHHHHHhC
Confidence 99999888863
Done!