Query 002048
Match_columns 975
No_of_seqs 255 out of 1517
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 10:10:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002048.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002048hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wa5_C Importin alpha RE-expor 100.0 7E-109 2E-113 1043.2 93.4 938 7-968 3-958 (960)
2 4fdd_A Transportin-1; heat rep 100.0 5.3E-51 1.8E-55 510.5 66.5 811 1-966 3-849 (852)
3 2x19_B Importin-13; nuclear tr 100.0 1.2E-44 4.1E-49 459.9 62.5 729 3-802 18-844 (963)
4 3m1i_C Exportin-1; heat repeat 100.0 2.7E-44 9.2E-49 457.6 56.2 733 5-812 12-840 (1049)
5 2x1g_F Cadmus; transport prote 100.0 2.5E-43 8.6E-48 447.3 57.9 723 5-786 3-841 (971)
6 2bpt_A Importin beta-1 subunit 100.0 1.7E-39 5.8E-44 408.5 53.2 677 7-785 2-734 (861)
7 4hat_C Exportin-1; heat repeat 100.0 2.7E-35 9.2E-40 365.1 51.9 726 5-788 12-913 (1023)
8 1qgr_A Protein (importin beta 100.0 2.2E-35 7.4E-40 371.8 48.9 686 10-786 2-746 (876)
9 3gjx_A Exportin-1; transport, 100.0 2.7E-32 9.2E-37 335.5 47.7 697 6-781 25-830 (1073)
10 3ibv_A Exportin-T; karyopherin 100.0 5.6E-30 1.9E-34 317.8 58.4 651 5-725 2-773 (980)
11 1ibr_B P95, importin beta-1 su 100.0 2.1E-31 7.1E-36 309.4 29.9 435 10-570 2-461 (462)
12 3a6p_A Exportin-5; exportin-5, 100.0 1.3E-27 4.4E-32 304.7 42.8 564 1-609 1-680 (1204)
13 1u6g_C TIP120 protein, CAND1; 99.9 3.2E-19 1.1E-23 231.8 43.4 639 7-744 4-743 (1230)
14 1qgr_A Protein (importin beta 99.8 1.1E-16 3.8E-21 201.1 53.5 624 55-808 13-726 (876)
15 4fdd_A Transportin-1; heat rep 99.8 5.6E-15 1.9E-19 184.4 56.1 675 8-811 47-790 (852)
16 2bpt_A Importin beta-1 subunit 99.8 1.1E-13 3.8E-18 173.3 59.5 672 6-785 91-836 (861)
17 1u6g_C TIP120 protein, CAND1; 99.6 6.5E-13 2.2E-17 172.5 44.8 543 43-697 8-616 (1230)
18 1b3u_A Protein (protein phosph 99.4 2.3E-10 8E-15 136.3 39.2 422 90-631 157-584 (588)
19 1b3u_A Protein (protein phosph 99.4 1.4E-10 4.9E-15 138.1 36.1 539 7-675 8-583 (588)
20 2x19_B Importin-13; nuclear tr 99.1 8.1E-06 2.8E-10 103.0 57.0 670 9-786 103-876 (963)
21 1wa5_C Importin alpha RE-expor 99.0 1.3E-05 4.5E-10 100.8 52.6 314 391-748 419-775 (960)
22 2x1g_F Cadmus; transport prote 99.0 1.3E-05 4.5E-10 101.2 52.7 361 390-784 477-886 (971)
23 4hat_C Exportin-1; heat repeat 99.0 2.1E-05 7.1E-10 97.9 51.1 299 485-802 466-831 (1023)
24 2vgl_B AP-2 complex subunit be 98.7 2.1E-05 7.3E-10 92.9 36.8 355 96-540 120-494 (591)
25 3m1i_C Exportin-1; heat repeat 98.7 0.00099 3.4E-08 84.4 51.7 378 390-786 466-911 (1049)
26 3ibv_A Exportin-T; karyopherin 98.7 0.0034 1.2E-07 78.0 55.1 349 489-858 460-872 (980)
27 1ibr_B P95, importin beta-1 su 98.6 6.6E-06 2.3E-10 94.2 28.3 424 101-607 5-458 (462)
28 2qk1_A Protein STU2; STU2P, XM 98.6 7.1E-07 2.4E-11 92.5 17.8 185 432-637 27-223 (249)
29 2jdq_A Importin alpha-1 subuni 98.5 7.4E-06 2.5E-10 93.5 21.8 110 43-169 22-137 (450)
30 2jdq_A Importin alpha-1 subuni 98.4 3.7E-05 1.3E-09 87.6 24.2 357 131-589 13-390 (450)
31 2qk2_A LP04448P; mini spindles 98.3 1.7E-05 5.8E-10 82.0 17.2 175 432-636 26-207 (242)
32 2vgl_B AP-2 complex subunit be 98.2 0.00079 2.7E-08 79.4 31.6 134 11-170 15-152 (591)
33 1w63_A Adapter-related protein 98.1 0.0085 2.9E-07 70.8 36.8 145 17-168 42-208 (618)
34 2qk2_A LP04448P; mini spindles 98.0 0.00021 7.3E-09 73.6 18.2 185 389-601 27-219 (242)
35 1wa5_B Importin alpha subunit; 98.0 0.0007 2.4E-08 78.9 24.7 396 39-541 85-512 (530)
36 1wa5_B Importin alpha subunit; 98.0 0.00024 8.3E-09 82.8 20.1 301 391-724 145-461 (530)
37 2z6g_A B-catenin; FULL-length, 97.9 0.0012 4.1E-08 80.5 25.8 139 8-167 152-304 (780)
38 2vgl_A Adaptor protein complex 97.9 0.033 1.1E-06 65.6 36.5 69 96-169 145-217 (621)
39 4b8j_A Importin subunit alpha- 97.8 0.006 2.1E-07 70.8 29.4 343 100-541 77-445 (528)
40 2qk1_A Protein STU2; STU2P, XM 97.8 0.00029 9.8E-09 72.7 15.8 192 390-601 29-234 (249)
41 4b8j_A Importin subunit alpha- 97.8 0.0023 7.8E-08 74.5 24.7 335 278-678 133-495 (528)
42 1w63_A Adapter-related protein 97.8 0.0086 2.9E-07 70.8 29.5 134 381-540 39-172 (618)
43 2z6h_A Catenin beta-1, beta-ca 97.7 0.0098 3.4E-07 70.9 29.6 135 8-168 16-169 (644)
44 2vgl_A Adaptor protein complex 97.7 0.0034 1.2E-07 74.1 25.0 147 389-572 51-199 (621)
45 3now_A UNC-45 protein, SD10334 97.7 0.16 5.5E-06 60.7 40.5 217 433-680 507-738 (810)
46 1jdh_A Beta-catenin; beta-cate 97.7 0.014 4.8E-07 67.6 28.9 134 9-168 20-172 (529)
47 2z6g_A B-catenin; FULL-length, 97.6 0.033 1.1E-06 67.8 31.3 343 100-539 118-472 (780)
48 3tpo_A Importin subunit alpha- 97.4 0.0027 9.2E-08 73.8 17.3 296 391-722 134-451 (529)
49 3ul1_B Importin subunit alpha- 97.4 0.056 1.9E-06 62.1 28.0 170 393-589 248-430 (510)
50 3tpo_A Importin subunit alpha- 97.2 0.11 3.9E-06 59.9 28.5 358 251-678 120-496 (529)
51 3ul1_B Importin subunit alpha- 97.1 0.0027 9.2E-08 73.3 13.2 304 392-722 116-432 (510)
52 4hxt_A De novo protein OR329; 97.0 0.0064 2.2E-07 62.5 13.7 221 433-683 14-245 (252)
53 2z6h_A Catenin beta-1, beta-ca 96.8 0.85 2.9E-05 53.9 31.5 309 135-540 14-337 (644)
54 4db6_A Armadillo repeat protei 96.6 0.02 6.9E-07 56.9 13.7 185 472-677 16-207 (210)
55 4db8_A Armadillo-repeat protei 96.5 0.015 5.3E-07 59.7 11.8 183 474-677 60-249 (252)
56 2iw3_A Elongation factor 3A; a 96.4 0.14 4.8E-06 62.3 21.3 196 390-661 108-305 (986)
57 4db6_A Armadillo repeat protei 96.4 0.022 7.6E-07 56.6 12.0 157 390-573 25-193 (210)
58 4db8_A Armadillo-repeat protei 96.4 0.016 5.5E-07 59.6 11.2 133 433-587 66-207 (252)
59 4hxt_A De novo protein OR329; 96.3 0.02 7E-07 58.6 11.8 180 484-680 14-200 (252)
60 1xqr_A HSPBP1 protein; armadil 96.2 0.059 2E-06 56.7 14.4 142 476-635 90-239 (296)
61 1jdh_A Beta-catenin; beta-cate 95.6 4.2 0.00014 46.4 33.3 349 99-540 19-386 (529)
62 3ltm_A Alpha-REP4; protein eng 95.6 0.18 6.1E-06 50.0 14.4 108 390-537 32-139 (211)
63 3u0r_A Apoptosis inhibitor 5; 95.5 3.7 0.00013 44.9 25.1 289 484-811 40-364 (507)
64 1oyz_A Hypothetical protein YI 95.2 0.18 6.2E-06 52.5 13.5 119 391-537 68-186 (280)
65 3ltj_A Alpharep-4; protein eng 95.1 0.28 9.7E-06 48.0 14.1 108 390-537 27-134 (201)
66 2db0_A 253AA long hypothetical 95.1 2 6.9E-05 40.2 17.8 175 388-589 43-246 (253)
67 3now_A UNC-45 protein, SD10334 95.0 8.2 0.00028 46.1 49.8 569 138-785 95-719 (810)
68 1xqr_A HSPBP1 protein; armadil 94.9 0.44 1.5E-05 50.0 15.2 176 488-680 56-239 (296)
69 3gjx_A Exportin-1; transport, 94.8 12 0.00039 46.6 54.2 381 389-788 491-937 (1073)
70 2iw3_A Elongation factor 3A; a 94.5 0.63 2.2E-05 56.6 17.2 208 439-679 70-280 (986)
71 3b2a_A TON_1937, putative unch 93.7 1.5 5.1E-05 43.0 14.4 179 472-680 37-219 (265)
72 3ltm_A Alpha-REP4; protein eng 92.6 1.3 4.4E-05 43.6 13.2 120 10-166 20-139 (211)
73 3ltj_A Alpharep-4; protein eng 92.4 1.2 4E-05 43.5 12.5 123 7-166 12-134 (201)
74 1oyz_A Hypothetical protein YI 91.9 2.6 8.9E-05 43.4 15.2 126 12-163 26-152 (280)
75 1te4_A Conserved protein MTH18 91.3 0.17 5.8E-06 45.8 4.5 78 432-536 53-130 (131)
76 1te4_A Conserved protein MTH18 90.9 0.34 1.2E-05 43.7 6.1 78 432-537 23-100 (131)
77 3tjz_B Coatomer subunit gamma; 90.6 1.2 4.2E-05 47.5 11.0 91 432-540 79-169 (355)
78 3nmz_A APC variant protein; pr 90.3 15 0.00051 40.8 20.0 207 323-539 162-408 (458)
79 4ffb_C Protein STU2; tubulin f 90.2 4.3 0.00015 41.8 14.8 178 432-636 20-214 (278)
80 3nmw_A APC variant protein; AR 89.8 24 0.00081 37.7 21.7 268 304-589 18-334 (354)
81 3nmw_A APC variant protein; AR 89.0 5 0.00017 43.1 14.4 226 485-726 97-340 (354)
82 4ffb_C Protein STU2; tubulin f 88.8 1.7 5.7E-05 45.1 10.3 187 389-593 21-217 (278)
83 2of3_A ZYG-9; multifunctional 88.8 17 0.00058 36.8 17.2 93 390-540 145-237 (266)
84 3nmz_A APC variant protein; pr 86.6 7.4 0.00025 43.3 14.3 226 485-723 213-453 (458)
85 3l6x_A Catenin delta-1; cateni 86.1 23 0.00078 40.6 18.2 166 390-572 205-407 (584)
86 3a6p_A Exportin-5; exportin-5, 84.8 72 0.0025 40.4 23.9 142 390-541 109-278 (1204)
87 3opb_A SWI5-dependent HO expre 84.7 70 0.0024 37.7 26.6 76 89-168 284-363 (778)
88 2of3_A ZYG-9; multifunctional 84.5 5.2 0.00018 40.6 10.6 178 391-597 60-245 (266)
89 3tjz_B Coatomer subunit gamma; 80.4 7.4 0.00025 41.5 10.4 122 393-539 84-205 (355)
90 1xm9_A Plakophilin 1; armadill 77.5 19 0.00066 40.0 13.5 186 484-679 14-220 (457)
91 3oc3_A Helicase MOT1, MOT1; re 76.6 22 0.00075 39.8 12.5 167 389-589 186-365 (800)
92 3grl_A General vesicular trans 76.6 87 0.003 35.9 18.1 261 488-763 38-344 (651)
93 1vsy_4 Proteasome activator BL 76.4 1.3E+02 0.0046 35.7 22.5 110 469-589 340-455 (799)
94 3l9t_A Putative uncharacterize 76.3 6.9 0.00024 38.6 7.9 125 388-539 82-207 (240)
95 4ady_A RPN2, 26S proteasome re 67.1 45 0.0015 40.3 13.5 76 484-571 624-699 (963)
96 1w9c_A CRM1 protein, exportin 64.1 66 0.0023 33.4 12.5 143 646-788 65-229 (321)
97 1vsy_4 Proteasome activator BL 64.1 2.4E+02 0.0081 33.6 25.6 117 506-636 335-457 (799)
98 4atg_A TAF6; transcription, TF 63.5 59 0.002 31.1 11.1 123 665-790 61-187 (196)
99 3u0r_A Apoptosis inhibitor 5; 63.4 58 0.002 35.7 12.3 56 603-658 214-276 (507)
100 4ady_A RPN2, 26S proteasome re 62.8 1E+02 0.0034 37.3 15.4 19 18-36 24-42 (963)
101 3tt9_A Plakophilin-2; cell adh 62.6 80 0.0028 31.2 12.6 63 475-539 15-81 (233)
102 3oc3_A Helicase MOT1, MOT1; re 62.0 83 0.0028 35.3 13.1 174 432-635 185-366 (800)
103 1xm9_A Plakophilin 1; armadill 60.2 75 0.0026 35.1 13.4 139 8-168 4-172 (457)
104 2jak_A Serine/threonine-protei 59.6 1.9E+02 0.0064 30.9 15.9 169 560-746 174-350 (392)
105 4atg_A TAF6; transcription, TF 57.3 64 0.0022 30.8 10.2 123 299-450 39-162 (196)
106 4gmo_A Putative uncharacterize 57.2 21 0.00072 42.1 8.5 57 484-540 46-106 (684)
107 4gmo_A Putative uncharacterize 56.8 50 0.0017 38.8 11.7 30 510-540 35-64 (684)
108 1w9c_A CRM1 protein, exportin 49.0 1.7E+02 0.0058 30.3 12.5 98 579-680 93-197 (321)
109 3grl_A General vesicular trans 48.0 2.2E+02 0.0074 32.7 14.2 138 393-572 38-178 (651)
110 3fga_B Serine/threonine-protei 47.4 2.9E+02 0.01 29.6 25.1 113 666-786 187-305 (403)
111 3l6x_A Catenin delta-1; cateni 44.9 3.9E+02 0.013 30.3 30.4 392 101-542 52-479 (584)
112 2jak_A Serine/threonine-protei 40.4 3.7E+02 0.013 28.7 17.7 114 665-786 231-350 (392)
113 1upk_A MO25 protein; transfera 38.2 96 0.0033 32.3 8.6 127 687-818 164-298 (341)
114 1vdy_A Hypothetical protein (R 32.3 33 0.0011 30.8 3.5 46 120-169 31-79 (140)
115 1vsy_5 Proteasome activator BL 31.4 1.1E+02 0.0039 37.4 9.3 103 489-606 818-944 (997)
116 3fga_B Serine/threonine-protei 29.1 5.6E+02 0.019 27.4 21.3 116 440-572 190-305 (403)
117 1lsh_A Lipovitellin (LV-1N, LV 27.7 8.8E+02 0.03 29.8 16.7 117 396-535 418-539 (1056)
118 3opb_A SWI5-dependent HO expre 26.2 8.5E+02 0.029 28.6 23.7 235 389-635 469-729 (778)
119 2npp_B PP2A, B subunit, serine 23.1 7.5E+02 0.026 26.9 27.3 114 665-786 219-338 (449)
120 2b6c_A Hypothetical protein EF 22.6 1.1E+02 0.0037 29.8 5.8 121 390-539 68-188 (220)
121 3jxy_A Alkylpurine DNA glycosy 21.5 1.4E+02 0.0049 29.2 6.5 120 391-539 75-195 (232)
122 1n6j_G Calcineurin-binding pro 21.2 75 0.0026 19.7 2.5 17 89-105 8-24 (35)
123 3tt9_A Plakophilin-2; cell adh 21.2 5.8E+02 0.02 24.8 11.7 100 7-128 9-126 (233)
124 1upk_A MO25 protein; transfera 20.3 7.4E+02 0.025 25.7 15.3 174 112-334 93-279 (341)
No 1
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=7.3e-109 Score=1043.20 Aligned_cols=938 Identities=28% Similarity=0.523 Sum_probs=820.3
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCCCC
Q 002048 7 TLQHLSQCFLHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPT 86 (975)
Q Consensus 7 ~~~~l~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~~ 86 (975)
|.++|.++|.+++|||+++| ||++|++++++|||+..|++++.+.+.+.++|++|+++|||.|+++|+...+.
T Consensus 3 d~~~l~~~L~~~~spd~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~----- 75 (960)
T 1wa5_C 3 DLETVAKFLAESVIASTAKT--SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGN----- 75 (960)
T ss_dssp HHHHHHHHHHHTTSGGGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSC-----
T ss_pred cHHHHHHHHHHhcCCCHHHH--HHHHHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccC-----
Confidence 47899999999999999988 99999999999999999999999988899999999999999999999865432
Q ss_pred cCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccCCChhHHhHHHHHHHHH
Q 002048 87 LAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSI 166 (975)
Q Consensus 87 ~~~i~~e~K~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i 166 (975)
..+++++|..||+.+++.+.++++.||++++.+|+.||++|||++||+|++.|++.++++ |+..++|+|.+|++|
T Consensus 76 -~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~----~~~~~~~aL~~l~~i 150 (960)
T 1wa5_C 76 -HLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSND----DMVTNKGVLTVAHSI 150 (960)
T ss_dssp -BSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSS----CTTHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCC----CHHHHHHHHHHHHHH
Confidence 269999999999999999999999999999999999999999999999999999999988 888999999999999
Q ss_pred HHhhhccccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhcccCCCchHHHH
Q 002048 167 FKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFED 246 (975)
Q Consensus 167 ~k~~~~~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~~~lp~~~~~ 246 (975)
+|+||+.+++++.+.+++.++..+.|+++++|..+.+.+.+. .++....+.+.++++.++|+|++++++++|+++.+
T Consensus 151 ~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~ 227 (960)
T 1wa5_C 151 FKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITAN---ENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFED 227 (960)
T ss_dssp HGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---C--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHH
Confidence 999998778888888899999999999999998765544332 22223345677899999999999999999999999
Q ss_pred hHHHHHHHHHHHhcccCCcccCC-C-CcCchHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHhccCCCCcchH
Q 002048 247 HMREWMTEFKKYLTTNYPALEST-S-DGLGLVDGLRAAVCENISLYMKMNEEEFQGYLNDFALAVWTLLGNVSQSSSRDS 324 (975)
Q Consensus 247 ~~~~~~~~~~~~l~~~~~~l~~~-~-~~~~~~~~~k~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~ 324 (975)
++..|++.|.+++....|.+..+ + ++.+.++++|+|+|+++.++.++|++.|.+|++.|++.+|+.+.+.+....+++
T Consensus 228 ~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~ 307 (960)
T 1wa5_C 228 NIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDI 307 (960)
T ss_dssp THHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHH
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHH
Confidence 99999999999998766543322 2 357889999999999999999999999999999999999999987665567899
Q ss_pred HHHHHHHHHHhh-chhhhhhcccCCCchhhHHHHhhcccCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHH
Q 002048 325 LAVTAIKFLTNV-STSVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKG 403 (975)
Q Consensus 325 ~~~~~l~fl~~~-~~~~~~~~~~~~~~l~~l~~~li~~~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~ 403 (975)
++.++++||+++ +.+.++.+|.+.+++..+++.+++|+|+++++|++.|++||+||++++.|++|.+|+|+||.++|+.
T Consensus 308 ~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~ 387 (960)
T 1wa5_C 308 LVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKE 387 (960)
T ss_dssp HHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHH
Confidence 999999999999 7777788883338999999889999999999999999999999999988777889999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhh---cCCCccccCcccHHHHHHHhcccccCCC
Q 002048 404 IATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKK---AGSTSISTDLVDVQSFFTSVIVPELQSP 480 (975)
Q Consensus 404 L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~---~~g~~~~~~~~~~~~~l~~~v~p~l~~~ 480 (975)
|+.++++.+++.+++++.+++++|.++++.+|+.||||++++|+++.++ ..|+...++.+++++|+.++|+|+++++
T Consensus 388 l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~ 467 (960)
T 1wa5_C 388 LKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSN 467 (960)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCS
T ss_pred HHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCC
Confidence 9999999999999999999999998777788999999999999998764 2355545567799999999999999874
Q ss_pred CCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccC--CCccccccccccchH
Q 002048 481 DVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDE--GGKSRYNSADITPYL 558 (975)
Q Consensus 481 ~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~--~~~~~~~~~~l~p~l 558 (975)
+ +.+|+||+||||++|+|+++++++.+..+++.++++|.|++.+||.+||.||.+|++..++ .+.+.+.++.+.||+
T Consensus 468 ~-~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l 546 (960)
T 1wa5_C 468 N-IPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNST 546 (960)
T ss_dssp S-CSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTH
T ss_pred C-CCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhH
Confidence 3 2499999999999999999999999999999999999999999999999999999986431 122345678899999
Q ss_pred HHHHHHHHHhcCCCC-----chhhHHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHH
Q 002048 559 SVLMTSLFNAFKFPE-----SEENQYIMKCIMRVLG-VAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVL 632 (975)
Q Consensus 559 ~~il~~L~~ll~~~~-----~~~~~~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l 632 (975)
+++++.|+.++++.. ..+++.+++++++++. +++++.||+..+++.|...+....++++++.+.++++|||+.+
T Consensus 547 ~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l 626 (960)
T 1wa5_C 547 EILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAI 626 (960)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 999999999998852 1257899999999999 9999999999999999999988888999999999999999999
Q ss_pred HHHhhhcCcchHHHHHHhhHHHHHHHHhcccccchHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCccccccCCCccchH
Q 002048 633 VRRACQRDPSLISAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKRSSNVPALV 712 (975)
Q Consensus 633 i~~~~~~~~~~~~~l~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~~~~~~~~~~~~lf~~l~~~~l~~~~~~l~~~~ 712 (975)
+++. .|+....+++.++|++..+|+++..+|.+|++++++.+++..+ ++++.|+++||.++++..|+..++++.++
T Consensus 627 ~~~~---~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 702 (960)
T 1wa5_C 627 LNYT---QRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSA-TIPESIKPLAQPLLAPNVWELKGNIPAVT 702 (960)
T ss_dssp HHTS---CGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCS-SCCTTTGGGHHHHTSGGGGCCTTTHHHHH
T ss_pred HhcC---CcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHcCHHHhcCCCCchhHH
Confidence 9983 5788999999999999999999999999999999999999884 59999999999999887898889999999
Q ss_pred HHHHHHHccCccchhccCchHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcchhhHhhhHHHHHHHHHHHhhcCchhhHH
Q 002048 713 RLLQAFLQKVPREIAQEGKLREVLGIFNMLVLSPSTDEQGFYVLNTIVESLEYGVIAQFVPHIWGVLFTRLQNKRTVKFV 792 (975)
Q Consensus 713 ~~L~~~i~~~~~~~~~~~~~~~il~i~~~ll~~~~~~~~a~~ll~~ii~~~~~~~~~~~l~~il~~~l~~L~~~~~~~~~ 792 (975)
++|.+|+..+++.|.+ ++.+++++++++.++..+..||.+++.++.+++++.+.+|++.++..++++++..+++++.
T Consensus 703 ~~L~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~ 779 (960)
T 1wa5_C 703 RLLKSFIKTDSSIFPD---LVPVLGIFQRLIASKAYEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYV 779 (960)
T ss_dssp HHHHHHHHHHGGGCSC---SHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHH
T ss_pred HHHHHHHHhChHHHHH---HHHHHHHHHHHhCCCcccchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHH
Confidence 9999999999988875 6789999999998776678899999999999985449999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHhhhcchhHHHHHHHHhhcCcccccchhhHHHHHHHHHHHhhcCcccccHHHhhhHHH
Q 002048 793 KSLLIFMSLFLVKHGPENLVNTMNAVQSGIILVILEQIWIPNLKLITGAIEWKLTAVASTRLICESPVLLDAAAVRHWGK 872 (975)
Q Consensus 793 ~~~i~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~w~~~~~~~~~~~~~K~~~lal~~Ll~~~~~~l~~~~~~~~~~ 872 (975)
+.++.+++.+++.++|+.+++.++++++|.|.+++.+.|+++++++.+.+|||++++||++|+..+ ...|..+...|+.
T Consensus 780 ~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~~~~~~~erk~~~~gl~~ll~~~-~~~~~~~~~~~~~ 858 (960)
T 1wa5_C 780 KKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRKIALIGVLNMVING-QFFQSKYPTLISS 858 (960)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGGCCSHHHHHHHHHHHHHHHHSC-HHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHHhccchhhccCHHHHHHHHHHHHHHHhcc-cccchhHHHHHHH
Confidence 999999999999999999999999999999988899999999999999999999999999999998 3334455678999
Q ss_pred HHHHHHHHhcCCCccccCCC-CCCcccccccCcccccccccccCCCCCCCCCCC---CChHHHHHHHHHHhhhhCCCCch
Q 002048 873 MLDSIVTLLSRPEEERVEEE-PEMPDITENMGYTTAFVNLYNAGKKEEDPLKDI---KDPKEFLVASLARISAVSPGRYP 948 (975)
Q Consensus 873 il~~~~~ll~~~~~~~~~~~-~d~~d~~~~~~~~~~~~~l~~~~~~~~Dp~~~~---~d~~~~~~~~l~~~~~~~~~~~~ 948 (975)
++..+++++.++......+| +|++|+||.+||+.+|.+|...++.++||+.++ .|++.||++.|+++++++||+|.
T Consensus 859 ~~~~i~~l~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~L~~~~~~~~dp~~~i~~~~d~~~~~~~~l~~~~~~~~~~~~ 938 (960)
T 1wa5_C 859 TMNSIIETASSQSIANLKNDYVDLDNLEEISTFGSHFSKLVSISEKPFDPLPEIDVNNGVRLYVAEALNKYNAISGNTFL 938 (960)
T ss_dssp HHHHHHHHHHSCSTTCSCCSCC-----CCCCCTTCCCCCCGGGCCCCCCSCTTSCTTTHHHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHhCCcccccCCccccccccccccccchHHHHHHhCCCCCCCChhhhcCcCCHHHHHHHHHHHHhccCCchHH
Confidence 99999999998554332221 111133344578899999998888889999999 49999999999999999999995
Q ss_pred hhhhhcCCHHHHHHHHHHHH
Q 002048 949 QIISENLEPANQSALLQLCS 968 (975)
Q Consensus 949 ~~~~~~l~~~~~~~l~~~~~ 968 (975)
+.+.++|++++|+.|+++++
T Consensus 939 ~l~~~~l~~~~~~~l~~~~~ 958 (960)
T 1wa5_C 939 NTILPQLTQENQVKLNQLLV 958 (960)
T ss_dssp HHHGGGSCHHHHHHHHHHHC
T ss_pred HHHhccCCHHHHHHHHHHHc
Confidence 44488999999999999986
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=5.3e-51 Score=510.50 Aligned_cols=811 Identities=14% Similarity=0.215 Sum_probs=589.2
Q ss_pred CCCCh--hhHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCChHHHHHHHHHh-cCcChHHHHHHHHHHHhhhhcccCC
Q 002048 1 MEWNQ--ETLQHLSQCFLHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAE-QTIDEQIRHAAAVNFKNHLRFRWAP 77 (975)
Q Consensus 1 m~~~~--~~~~~l~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~-~~~~~~vRq~Aai~lKn~I~~~W~~ 77 (975)
|+|+| .+.++|.++|++++|||+++|++||++|++++++|+|...|+.++.+ .+.+..+|++|+++|||.|+++|.
T Consensus 3 ~~w~~~~~~~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~- 81 (852)
T 4fdd_A 3 YEWKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQ- 81 (852)
T ss_dssp --CCCCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGG-
T ss_pred CCCCCChhhHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccC-
Confidence 67877 67899999999999999999999999999999999999999999996 567899999999999999999997
Q ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccCCChhHHh
Q 002048 78 ASDRNSGPTLAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSIN 157 (975)
Q Consensus 78 ~~~~~~~~~~~~i~~e~K~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~~~~~ 157 (975)
.+++++|..||+.+++++.++++.||++++.+++.|++.|+|++||++++.+.+.++++ +....+
T Consensus 82 -----------~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~----~~~~r~ 146 (852)
T 4fdd_A 82 -----------NFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSE----DYNTCE 146 (852)
T ss_dssp -----------GCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCS----SHHHHH
T ss_pred -----------CCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCC----CHHHHH
Confidence 58999999999999999988888999999999999999999999999999999999988 889999
Q ss_pred HHHHHHHHHHHhhhccccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhccc
Q 002048 158 GILGTANSIFKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNF 237 (975)
Q Consensus 158 ~~L~~l~~i~k~~~~~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~ 237 (975)
+++.+|+.+++++...+..+.... .+..+.|.++..+ . ..+...+..+ ++++..+..
T Consensus 147 ~al~~L~~i~~~~~~~~~~~~~~~----~~~~il~~l~~~l--------~----~~~~~vR~~A-------~~aL~~~~~ 203 (852)
T 4fdd_A 147 GAFGALQKICEDSAEILDSDVLDR----PLNIMIPKFLQFF--------K----HSSPKIRSHA-------VACVNQFII 203 (852)
T ss_dssp HHHHHHHHHHHHHTTHHHHCSSSS----CHHHHHHHHTTTT--------T----CSSHHHHHHH-------HHHHHTTTT
T ss_pred HHHHHHHHHHHHhHHHhchhhhcc----hHHHHHHHHHHHh--------c----CCCHHHHHHH-------HHHHHHHHh
Confidence 999999999998754322111111 1222233332211 1 2233333333 333333221
Q ss_pred CCCchHHHHhHHHHHHHHHHHhcccCCcccCCCCcCchHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHhccC
Q 002048 238 QELPEFFEDHMREWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQGYLNDFALAVWTLLGNVS 317 (975)
Q Consensus 238 ~~lp~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~ 317 (975)
..++.+.+.+..+++.+...++ +++ ..+|+++++++..+.+.+++.+.+|+..+++.++..+..
T Consensus 204 -~~~~~~~~~~~~~l~~l~~~~~-------d~~------~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~-- 267 (852)
T 4fdd_A 204 -SRTQALMLHIDSFIENLFALAG-------DEE------PEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQD-- 267 (852)
T ss_dssp -TTCHHHHTSHHHHHHHHHHHHT-------CCC------HHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTC--
T ss_pred -cccHHHHHHHHHHHHHHHHHcC-------CCC------HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--
Confidence 1234444455555555555433 111 578999999999999999999999999999888887643
Q ss_pred CCCcchHHHHHHHHHHHhh-chhhhhhcccCCCchhhHHHHhhcccCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhHH
Q 002048 318 QSSSRDSLAVTAIKFLTNV-STSVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRI 396 (975)
Q Consensus 318 ~~~~~~~~~~~~l~fl~~~-~~~~~~~~~~~~~~l~~l~~~li~~~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~ 396 (975)
..+.+...+++||.++ +.+..++.+ ++++..++..+ ++.|.++++|.+.|+.|++|.-.+ +|..+.+++|.+
T Consensus 268 ---~~~~vr~~a~e~l~~l~~~~~~~~~~--~~~~~~l~p~l-l~~l~~~e~d~~~~~~d~~ed~~~-dd~~~~~~vr~~ 340 (852)
T 4fdd_A 268 ---QDENVALEACEFWLTLAEQPICKDVL--VRHLPKLIPVL-VNGMKYSDIDIILLKGDVEGGSGG-DDTISDWNLRKC 340 (852)
T ss_dssp ---SSHHHHHHHHHHHHHHTTSTTHHHHH--TTTHHHHHHHH-HHHTSCCHHHHHHHHC-------------CCCCHHHH
T ss_pred ---CcHHHHHHHHHHHHHHhcchhHHHHH--HHHHHHHHHHH-HHHcCCcHhHHHHhcCCccccccc-ccccccchHHHH
Confidence 3478999999999999 655556655 78999999754 699999999988777787553111 111156889999
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccc
Q 002048 397 ACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPE 476 (975)
Q Consensus 397 A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~ 476 (975)
|...+..++...++.+.+.+++++.+.++ +.+|+.|++|+.++|.++..+.+.+. ..+.. +...+++.
T Consensus 341 a~~~L~~la~~~~~~~~~~l~~~l~~~l~------~~~~~~R~aa~~alg~i~~~~~~~~~-----~~l~~-~l~~l~~~ 408 (852)
T 4fdd_A 341 SAAALDVLANVYRDELLPHILPLLKELLF------HHEWVVKESGILVLGAIAEGCMQGMI-----PYLPE-LIPHLIQC 408 (852)
T ss_dssp HHHHHHHHHHHHGGGGHHHHHHHHHHHHT------CSSHHHHHHHHHHHHHTTTTTHHHHG-----GGHHH-HHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHhcchHHHH-----HHHHH-HHHHHHHH
Confidence 99999999999999999999999988875 46899999999999999865422111 11223 34556677
Q ss_pred cCCCCCCCcchhHhhHHHHHHHhhccC----CHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccc
Q 002048 477 LQSPDVNAFPMLKAGALKFFTMFRIQI----PKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSA 552 (975)
Q Consensus 477 l~~~~~~~~~~Lr~ra~~~l~~f~~~~----~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~ 552 (975)
+.+ +++.+|..|+|++|++...+ ....+..+++.+++.|.|++..||..|+.||..+++.. ..
T Consensus 409 l~d----~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~---------~~ 475 (852)
T 4fdd_A 409 LSD----KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA---------CT 475 (852)
T ss_dssp TTC----SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH---------GG
T ss_pred cCC----CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh---------hH
Confidence 766 58999999999999988643 34678899999999999999999999999999998764 24
Q ss_pred cccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh-hccchh--hhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHH
Q 002048 553 DITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG-VAEISN--EVAAPCISGLTSILNEVCKNPKSPIFNHYLFESV 629 (975)
Q Consensus 553 ~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~-~~~~i~--p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l 629 (975)
.+.||++.+++.|+.+++.........+++++..++. .++.+. +|...+++.+...|... ++ +++.. ..+++|+
T Consensus 476 ~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l-~d-~~~~~-~~~~~~l 552 (852)
T 4fdd_A 476 ELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNML-KD-EDKDL-FPLLECL 552 (852)
T ss_dssp GGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHS-CT-TCTTH-HHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhc-cc-ccHHH-HHHHHHH
Confidence 5899999999999999987654444456788888877 666553 46666776666554322 22 23334 3789999
Q ss_pred HHHHHHhhhcCcchHHHHHHhhHHHHHHHHhcc-----------------cccchHHHHHHHHHHHHhcCCCCchhH--H
Q 002048 630 AVLVRRACQRDPSLISAFEASILPSLQIILQND-----------------VTEFLPYAFQLLAQLIELNRPPLSSNY--M 690 (975)
Q Consensus 630 ~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~-----------------~~~~~~~~l~ll~~ll~~~~~~~~~~~--~ 690 (975)
+.++..++. .+..+.+.++|.+..++.+. ..++...+++.++.+++.....+.+.+ -
T Consensus 553 ~~i~~~~g~----~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~ 628 (852)
T 4fdd_A 553 SSVATALQS----GFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARS 628 (852)
T ss_dssp HHHHHHHGG----GGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTC
T ss_pred HHHHHHHhH----hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCC
Confidence 999999832 33344444555433333211 234677788999999887543333332 1
Q ss_pred HHHHhhcCcccccc--CCCccchHHHHHHHHccCccchhccCchHHHHHHHHHhhcCCCCc--chHHHHHHHHHHhcchh
Q 002048 691 QIFNLLLSPDSWKR--SSNVPALVRLLQAFLQKVPREIAQEGKLREVLGIFNMLVLSPSTD--EQGFYVLNTIVESLEYG 766 (975)
Q Consensus 691 ~lf~~l~~~~l~~~--~~~l~~~~~~L~~~i~~~~~~~~~~~~~~~il~i~~~ll~~~~~~--~~a~~ll~~ii~~~~~~ 766 (975)
.+++.++. .+.+ ....+.+..++..+....++.+. +|+..++..+.+.+.+...+ ..|+..++.+...++ +
T Consensus 629 ~~~~~l~~--~l~~~~~~vr~~a~~~l~~l~~~~~~~~~--~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~-~ 703 (852)
T 4fdd_A 629 NILTLMYQ--CMQDKMPEVRQSSFALLGDLTKACFQHVK--PCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMG-I 703 (852)
T ss_dssp CHHHHHHH--HTTCSSHHHHHHHHHHHHHHHHHCGGGTG--GGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHG-G
T ss_pred cHHHHHHH--HhCCCChhHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhh-H
Confidence 45555544 2222 23456778888888887777766 37888888888888654332 457788999999985 5
Q ss_pred hHhhhHHHHHHHHHHHhhcCchh-hHHHHHHHHHHHHHHHhChHHHHHHHhhhcchhHHHHHHHHhhcCcccccchhhHH
Q 002048 767 VIAQFVPHIWGVLFTRLQNKRTV-KFVKSLLIFMSLFLVKHGPENLVNTMNAVQSGIILVILEQIWIPNLKLITGAIEWK 845 (975)
Q Consensus 767 ~~~~~l~~il~~~l~~L~~~~~~-~~~~~~i~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~w~~~~~~~~~~~~~K 845 (975)
.+.+|++.++..++..+.+.+.. ......+..+++++. .+|+.+-..+ .-+...|+..+++.....+|.
T Consensus 704 ~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~-~~~~~~~~~l---------~~~~~~~~~~l~~~~d~~e~~ 773 (852)
T 4fdd_A 704 EMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGY-VCPQEVAPML---------QQFIRPWCTSLRNIRDNEEKD 773 (852)
T ss_dssp GGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH-HCHHHHGGGH---------HHHHHHHHHHHHTSCSSHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHH-hCHHHhCccH---------HHHHHHHHHHhccccccHHHH
Confidence 68999999999999998875543 445556667777754 3666432222 235577999898888899999
Q ss_pred HHHHHHHHHhhcCcccccHHHhhhHHHHHHHHHHHhcCCCccccCCCCCCcccccccCcccccccccccCCCCCCCCCCC
Q 002048 846 LTAVASTRLICESPVLLDAAAVRHWGKMLDSIVTLLSRPEEERVEEEPEMPDITENMGYTTAFVNLYNAGKKEEDPLKDI 925 (975)
Q Consensus 846 ~~~lal~~Ll~~~~~~l~~~~~~~~~~il~~~~~ll~~~~~~~~~~~~d~~d~~~~~~~~~~~~~l~~~~~~~~Dp~~~~ 925 (975)
.++-|||.++..++..+ ...+..++..+.. |. +| +
T Consensus 774 ~a~~~l~~li~~~p~~~----~~~~~~~~~~~~~------------------------~~--------------~~--~- 808 (852)
T 4fdd_A 774 SAFRGICTMISVNPSGV----IQDFIFFCDAVAS------------------------WI--------------NP--K- 808 (852)
T ss_dssp HHHHHHHHHHHHCGGGT----GGGHHHHHHHHHT------------------------CS--------------SC--C-
T ss_pred HHHHHHHHHHHhChHhH----HHHHHHHHHHHHh------------------------cC--------------CC--C-
Confidence 99999999999987643 2344544444333 00 01 0
Q ss_pred CChHHHHHHHHHHhhhhCCC-CchhhhhhcCCHHHHHHHHHH
Q 002048 926 KDPKEFLVASLARISAVSPG-RYPQIISENLEPANQSALLQL 966 (975)
Q Consensus 926 ~d~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~ 966 (975)
++++.-|.+.|+.+++..|+ .| +.+...++|+.++.|+..
T Consensus 809 ~~l~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~ 849 (852)
T 4fdd_A 809 DDLRDMFCKILHGFKNQVGDENW-RRFSDQFPLPLKERLAAF 849 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHGGGCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCchhH-HHHHHhCCHHHHHHHHHH
Confidence 15788899999999888764 57 556788999999988763
No 3
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=1.2e-44 Score=459.87 Aligned_cols=729 Identities=11% Similarity=0.128 Sum_probs=486.2
Q ss_pred CChhhHHHHHHHHHH-hcCCChHHHHHHHHHHHHHhcCCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCC
Q 002048 3 WNQETLQHLSQCFLH-TLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDR 81 (975)
Q Consensus 3 ~~~~~~~~l~~~L~~-tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~ 81 (975)
|.+.+.++|.++|.+ ..++|++.|++||++|++++++|+++..+.+++.+ +.+..+|++|+++|||.|+++|.
T Consensus 18 m~~~~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~-~~~~~vr~~aa~~L~~~i~~~w~----- 91 (963)
T 2x19_B 18 ALDFTVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQP-DKVPEIQYFGASALHIKISRYWS----- 91 (963)
T ss_dssp CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTST-TSCHHHHHHHHHHHHHHHHHCGG-----
T ss_pred CCHhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHhCHH-----
Confidence 333578999999998 66799999999999999999999999999999876 56899999999999999999997
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccC-CChhHHh
Q 002048 82 NSGPTLAPILDAEKDQIKSLIVGLMLT---STPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQS-NNYVSIN 157 (975)
Q Consensus 82 ~~~~~~~~i~~e~K~~Ir~~ll~~l~~---~~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~-~d~~~~~ 157 (975)
.+++++|..||+.|++.+.+ .++.||++++.+++.|+++|||++||++++++++.+++.... .++....
T Consensus 92 -------~l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~ 164 (963)
T 2x19_B 92 -------DIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCL 164 (963)
T ss_dssp -------GSCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHH
T ss_pred -------hCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHH
Confidence 58999999999999999988 367899999999999999999999999999999999761000 0455678
Q ss_pred HHHHHHHHHHHhhhccccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhccc
Q 002048 158 GILGTANSIFKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNF 237 (975)
Q Consensus 158 ~~L~~l~~i~k~~~~~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~ 237 (975)
++|.+|..++++....-.+.+.+..++..+...+|.+++++..+.+ +. ..+...... ++|++.++..
T Consensus 165 ~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~---~~---~~~~~~~~~-------~l~~l~~wi~ 231 (963)
T 2x19_B 165 ALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQ---QP---SSPSCVRQK-------VLKCFSSWVQ 231 (963)
T ss_dssp HHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHS---CT---TCCHHHHHH-------HHHHHHHHHT
T ss_pred HHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHh---CC---CCchHHHHH-------HHHHHHHHHc
Confidence 8999999988754211001111223333334455666666665542 21 111112222 3333322111
Q ss_pred CCC-----chHHH---------HhHHHHHHHHHHHhcccCCc-------------------c---cCCCCcCchHHHHHH
Q 002048 238 QEL-----PEFFE---------DHMREWMTEFKKYLTTNYPA-------------------L---ESTSDGLGLVDGLRA 281 (975)
Q Consensus 238 ~~l-----p~~~~---------~~~~~~~~~~~~~l~~~~~~-------------------l---~~~~~~~~~~~~~k~ 281 (975)
.+. +..+. +....|+..+..++....+. + ...+| .+ ..+
T Consensus 232 ~~~~~~~~~~ll~~l~~~l~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d----~~-~~~ 306 (963)
T 2x19_B 232 LEVPLQDCEALIQAAFAALQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGD----ME-TSH 306 (963)
T ss_dssp SSCCGGGTHHHHHHHHHHTTSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTC----HH-HHH
T ss_pred CCCCcccchHHHHHHHHHhCCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCC----HH-HHH
Confidence 111 00000 11223444444444321100 0 00001 12 234
Q ss_pred HHHHHHHHHHHHhHHHHHhh--HHHHHHHHHHHHhccCCC----CcchHHHHHHHHHHHhh-c-h--------hhhhhcc
Q 002048 282 AVCENISLYMKMNEEEFQGY--LNDFALAVWTLLGNVSQS----SSRDSLAVTAIKFLTNV-S-T--------SVHHTLF 345 (975)
Q Consensus 282 ~~~~~l~~~~~~~~~~f~~~--~~~~~~~~~~~l~~~~~~----~~~~~~~~~~l~fl~~~-~-~--------~~~~~~~ 345 (975)
.+++++..+.+.|+..+... .+..+..+|+.+...... ...+++...+++||..+ + . +..+..+
T Consensus 307 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~ 386 (963)
T 2x19_B 307 GICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVY 386 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 67778888877777666410 112223444444433222 23567788999999987 4 1 3344555
Q ss_pred cCCCchhhHHHHhhcccCCCChhh-HHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 002048 346 AGEGVIPQICQNIVIPNVRLRDED-EELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLL 424 (975)
Q Consensus 346 ~~~~~l~~l~~~li~~~l~l~~~d-~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l 424 (975)
++.+.+++..++ +.|...+++ .+.|++|+. +++.+.|.++.++|+.++..+++.+++.+++++.+.+
T Consensus 387 --~~~l~~l~~~ll-~~~~~p~~~~~~~~~~de~---------~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l 454 (963)
T 2x19_B 387 --RPVYFQLVDVLL-HKAQFPSDEEYGFWSSDEK---------EQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLL 454 (963)
T ss_dssp --HHHHHHHHHHHH-HHHSCCCHHHHHTSCHHHH---------HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHH-HHHcCCCcccccCCChhHH---------HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 678888887555 566654333 344544322 2345679999999999999999999999999999999
Q ss_pred HHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccC-
Q 002048 425 TSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQI- 503 (975)
Q Consensus 425 ~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~- 503 (975)
++|.+ +.+|+.+||+++++|++++++.++.. ..+...+. +++.+.+ ++|.+|.++||++|+|++.+
T Consensus 455 ~~~~~--~~~w~~~eaal~al~~i~~~~~~~~~-----~~l~~l~~--~l~~l~~----~~~~vr~~~~~~l~~~~~~l~ 521 (963)
T 2x19_B 455 TSSEE--PYSWQHTEALLYGFQSIAETIDVNYS-----DVVPGLIG--LIPRISI----SNVQLADTVMFTIGALSEWLA 521 (963)
T ss_dssp HTCCC--SCCHHHHHHHHHHHHHHTTSCCSSCC-----SHHHHHHH--HGGGSCC----CSHHHHHHHHHHHHHTHHHHH
T ss_pred HhcCC--CCchHHHHHHHHHHHHHHhhcCchhh-----HHHHHHHH--HHHhCCC----CcHHHHHHHHHHHHHHHHHHH
Confidence 87622 36899999999999999977643221 12333332 3455554 47899999999999999865
Q ss_pred -CHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCC--CchhhHHH
Q 002048 504 -PKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFP--ESEENQYI 580 (975)
Q Consensus 504 -~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~--~~~~~~~l 580 (975)
.++.+..+++.++++|++ ..|+.+||.|+.++++.. +..+.||++++++.|+.+++.. +......+
T Consensus 522 ~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~---------~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~ 590 (963)
T 2x19_B 522 DHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICREC---------KYDLPPYAANIVAVSQDVLMKQIHKTSQCMWL 590 (963)
T ss_dssp HCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHT---------GGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHH---------HHHHHhhHHHHHHHHHHHhccCCCChHHHHHH
Confidence 468899999999999976 789999999999999753 4568999999999999999753 33456688
Q ss_pred HHHHHHHHh-hc-cchhhhHHHHHHHHHHHHHHHHhCCCCCchh---HHHHHHHHHHHHHhhhc----------------
Q 002048 581 MKCIMRVLG-VA-EISNEVAAPCISGLTSILNEVCKNPKSPIFN---HYLFESVAVLVRRACQR---------------- 639 (975)
Q Consensus 581 ~~~l~~vi~-~~-~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~---~~~~e~l~~li~~~~~~---------------- 639 (975)
+++++.++. .+ ++..||...+++.+.+.|....+++.++... +.++++++.++++++..
T Consensus 591 ~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 670 (963)
T 2x19_B 591 MQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPV 670 (963)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC-------------
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCC
Confidence 999999998 75 8889999999999998888877666555443 47899999999998421
Q ss_pred --CcchHHHHHHhhHHHHHHHHhcccc--cchHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCccccccCCCccchHHHH
Q 002048 640 --DPSLISAFEASILPSLQIILQNDVT--EFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKRSSNVPALVRLL 715 (975)
Q Consensus 640 --~~~~~~~l~~~l~P~i~~il~~~~~--~~~~~~l~ll~~ll~~~~~~~~~~~~~lf~~l~~~~l~~~~~~l~~~~~~L 715 (975)
.++....+.+.++|.+..+++.... +..+.++.++..++...+....|.+-.+++.++.. ... ...+..+.++
T Consensus 671 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~--~~~-~~~~~~l~l~ 747 (963)
T 2x19_B 671 PQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRM--YST-IPQASALDLT 747 (963)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHH--HHH-SCCHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHH--HHc-CCccHHHHHH
Confidence 2245677899999999999876542 45677888888887765433444444444443321 112 1356778888
Q ss_pred HHHHc--cCccchh---cc---CchHHHHHHHHHhhcC-CCCcchHHHHHHHHHHhcchhhH-hhh-HHHHHHHHHHHhh
Q 002048 716 QAFLQ--KVPREIA---QE---GKLREVLGIFNMLVLS-PSTDEQGFYVLNTIVESLEYGVI-AQF-VPHIWGVLFTRLQ 784 (975)
Q Consensus 716 ~~~i~--~~~~~~~---~~---~~~~~il~i~~~ll~~-~~~~~~a~~ll~~ii~~~~~~~~-~~~-l~~il~~~l~~L~ 784 (975)
..++. ...+.+. .. ...+.+++++++.+.+ ......+|.++..++.++|...+ .+. ++.++..++..+.
T Consensus 748 ~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~ 827 (963)
T 2x19_B 748 RQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALK 827 (963)
T ss_dssp HHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcC
Confidence 88877 3322111 10 1223333334332211 11135688999999999875444 355 8888988888887
Q ss_pred cCchhhHHHHHHHHHHHH
Q 002048 785 NKRTVKFVKSLLIFMSLF 802 (975)
Q Consensus 785 ~~~~~~~~~~~i~~~~~~ 802 (975)
..+ ....+..+-++..+
T Consensus 828 ~~~-~~~~~~~l~~l~~l 844 (963)
T 2x19_B 828 FPE-APTVKASCGFFTEL 844 (963)
T ss_dssp CSC-HHHHHHHHHHHHHH
T ss_pred CCC-HHHHHHHHHHHHHH
Confidence 433 33333333334333
No 4
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=2.7e-44 Score=457.57 Aligned_cols=733 Identities=13% Similarity=0.170 Sum_probs=477.0
Q ss_pred hhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCC
Q 002048 5 QETLQHLSQCFLHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSG 84 (975)
Q Consensus 5 ~~~~~~l~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~ 84 (975)
+.+.++|.++|.++++||++.|++||++|++++++|+++..+.+++.++ .+..+|++|+++|||.|+++|.
T Consensus 12 ~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s-~~~~vr~~aa~~Lk~~i~~~W~-------- 82 (1049)
T 3m1i_C 12 DLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFS-TNPQSKFIALSILDKLITRKWK-------- 82 (1049)
T ss_dssp CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSTTGGGGHHHHHHHC-SCHHHHHHHHHHHHHHHHHTGG--------
T ss_pred cccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhCchHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHhhCc--------
Confidence 4578999999999999999999999999999999999999999999874 5899999999999999999996
Q ss_pred CCcCCCCHHHHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccCCChhH
Q 002048 85 PTLAPILDAEKDQIKSLIVGLMLTST---------PRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVS 155 (975)
Q Consensus 85 ~~~~~i~~e~K~~Ir~~ll~~l~~~~---------~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~~~ 155 (975)
.+++++|..||+.+++.+.+.+ +.||++++.+++.|+++|||++||++++++++.++ + +...
T Consensus 83 ----~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~----~~~~ 153 (1049)
T 3m1i_C 83 ----LLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-S----SVNV 153 (1049)
T ss_dssp ----GSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-T----CHHH
T ss_pred ----cCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-c----ChHH
Confidence 6999999999999999998753 57999999999999999999999999999999996 4 4455
Q ss_pred HhHHHHHHHHHHHhhhc---cccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHh
Q 002048 156 INGILGTANSIFKKFRY---QFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIF 232 (975)
Q Consensus 156 ~~~~L~~l~~i~k~~~~---~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~ 232 (975)
..++|.+|..++++... .......+.+++..+...++.++.++.++.+ + ..+...... +++++
T Consensus 154 ~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~---~----~~~~~~~~~-------aL~~l 219 (1049)
T 3m1i_C 154 CENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLE---Q----GSSSSLIVA-------TLESL 219 (1049)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH---H----CCCHHHHHH-------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---h----cCCHHHHHH-------HHHHH
Confidence 56666666666654321 1011122334555555556666666655543 2 112222222 33333
Q ss_pred hhc-ccCCCchHH---------------HHhHHHHHHHHHHHhcccCCcc------------------------------
Q 002048 233 YSL-NFQELPEFF---------------EDHMREWMTEFKKYLTTNYPAL------------------------------ 266 (975)
Q Consensus 233 ~~~-~~~~lp~~~---------------~~~~~~~~~~~~~~l~~~~~~l------------------------------ 266 (975)
.++ .+.+++..+ .+....|++.+..++....+.-
T Consensus 220 ~~~l~wi~~~~~~~~~ll~~l~~~~l~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l 299 (1049)
T 3m1i_C 220 LRYLHWIPYRYIYETNILELLSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADL 299 (1049)
T ss_dssp HHHTTTSCTHHHHSSSHHHHHHTHHHHSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHhhCCHHHHhhhhHHHHHHHHhCCCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccH
Confidence 332 233322211 1122234444444444321100
Q ss_pred ----cCCCCcCchHHHHHHHHHHHHHHHHHHhHHHHHh--hHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHhh-c--
Q 002048 267 ----ESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQG--YLNDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNV-S-- 337 (975)
Q Consensus 267 ----~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~f~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~fl~~~-~-- 337 (975)
.+.+ ...+...+.+++.+..+.+.|.+.+.. .....+..+++.+...... ..+.+...+++||.++ +
T Consensus 300 ~~~~~~~~---~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~-~d~~v~~~~lefw~~l~~~l 375 (1049)
T 3m1i_C 300 KATYANAN---GNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKI-EERELFKTTLDYWHNLVADL 375 (1049)
T ss_dssp HHHHHHTC---TTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCC---cchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHH
Confidence 0000 001222335666666666665544421 1233445556655554332 2678899999999998 5
Q ss_pred --hhhhhhcccCCCchhhHHHHhhcccCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHhhhhhHHH
Q 002048 338 --TSVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQHVMET 415 (975)
Q Consensus 338 --~~~~~~~~~~~~~l~~l~~~li~~~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~~~~~~~~~~ 415 (975)
.+..+..+ ++++..++. ++++.|++.++ .+.+++||.|++|+..+++|.++.|.++.++|+.++..+++.+++.
T Consensus 376 ~~~~~~~~~~--~~~l~~Lv~-~ll~~m~~~ed-~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~ 451 (1049)
T 3m1i_C 376 FYEPLKKHIY--EEICSQLRL-VIIENMVRPEE-VLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEI 451 (1049)
T ss_dssp HHSTTCGGGG--HHHHHHHHH-HHHHTCCCCTT-CCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HhchhHHHHH--HHHHHHHHH-HHHHhcCCCcc-eeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 34445555 678999996 45688888653 3323457788888877777788999999999999999999888888
Q ss_pred HHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccC-cccHHHHHHHhcccccCCCCCCCcchhHhhHHH
Q 002048 416 VSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTD-LVDVQSFFTSVIVPELQSPDVNAFPMLKAGALK 494 (975)
Q Consensus 416 l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~-~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~ 494 (975)
+++++.+.++ ++..+|+.+||+++++|++++.+.++.. +. ..++.+++.+ +|++..++ .++|.+|.++||
T Consensus 452 v~~~l~~~l~----~~~~~W~~~eaal~algsia~~~~~~~e--~~~l~~v~~~l~~--l~~~~~~~-~~~~~v~~~~~~ 522 (1049)
T 3m1i_C 452 MISKLARQID----GSEWSWHNINTLSWAIGSISGTMSEDTE--KRFVVTVIKDLLD--LTVKKRGK-DNKAVVASDIMY 522 (1049)
T ss_dssp HHHHHHHHHT----SSSCCHHHHHHHHHHHHHTTTSSCHHHH--HHHHHHHHHHHHH--HTTSSCSH-HHHHHHHHHHHH
T ss_pred HHHHHHHHhC----CCCCCHHHHHHHHHHHHHHhcccCchhh--HHHHHHHHHHHHH--HHhhhccc-cchHHHHHHHHH
Confidence 8888877664 2356899999999999999865421100 11 2334444433 34443311 147888889999
Q ss_pred HHHHhhccC--CHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCC
Q 002048 495 FFTMFRIQI--PKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFP 572 (975)
Q Consensus 495 ~l~~f~~~~--~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~ 572 (975)
++|+|+..+ .++.+..+++.++.+|.+++.+|+..||.|+.+++..+... .....+..+.||++++++.+..++...
T Consensus 523 ~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~-l~~~~~~~~~p~~~~il~~l~~~~~~~ 601 (1049)
T 3m1i_C 523 VVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYH-FVIQQPRESEPFIQTIIRDIQKTTADL 601 (1049)
T ss_dssp HHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHH-HHSCCTTCSSCHHHHHHHTHHHHHTTS
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH-hhcccCCCCCcHHHHHHHHHHHHHHhC
Confidence 999998754 46889999999999999999999999999999999864210 001234556799999999999999987
Q ss_pred CchhhHHHHHHHHHHHh-hc--cchhhhHHHHHHHHHHHHHH----HHhCCCCCc-h-----hHHHHHHHHHHHHHhhhc
Q 002048 573 ESEENQYIMKCIMRVLG-VA--EISNEVAAPCISGLTSILNE----VCKNPKSPI-F-----NHYLFESVAVLVRRACQR 639 (975)
Q Consensus 573 ~~~~~~~l~~~l~~vi~-~~--~~i~p~~~~l~~~L~~~l~~----~~~~~~~~~-~-----~~~~~e~l~~li~~~~~~ 639 (975)
+..++..++++++.++. .+ +...+|...+++.+...|.. ..+|++++. . ...+++|+..+++++
T Consensus 602 ~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l--- 678 (1049)
T 3m1i_C 602 QPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSM--- 678 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHh---
Confidence 76677788999999998 65 45778888777766655543 335554331 1 124455556555554
Q ss_pred CcchHHHHHHhhHHHHHHHHhcccccchHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCccccccCCCccchHHHHHHHH
Q 002048 640 DPSLISAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKRSSNVPALVRLLQAFL 719 (975)
Q Consensus 640 ~~~~~~~l~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~~~~~~~~~~~~lf~~l~~~~l~~~~~~l~~~~~~L~~~i 719 (975)
.+.+.|.+..++.. . + ++++..+.+++......++ +.+..|..|...++.+.+.+++++|+
T Consensus 679 --------~~~f~p~~~~i~~~-~---l-~~~~~~~~~~~~~~~~~g~------~~~~~p~~~~~~~~~~~l~~ll~~~~ 739 (1049)
T 3m1i_C 679 --------GADFYPQLGHIYYN-M---L-QLYRAVSSMISAQVAAEGL------IATKTPKVRGLRTIKKEILKLVETYI 739 (1049)
T ss_dssp --------GGGGHHHHHHHHHH-H---H-HHHHHHHHHHHHHHHHHCG------GGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHHHH-H---H-HHHHHHHHHHHHHHHccCc------hhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555554431 1 1 2233222222211000000 00112222333345566777888888
Q ss_pred ccCc--cchhc---cCchHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcchhhHhhhHHHHHHHHHHHh----hc--Cch
Q 002048 720 QKVP--REIAQ---EGKLREVLGIFNMLVLSPSTDEQGFYVLNTIVESLEYGVIAQFVPHIWGVLFTRL----QN--KRT 788 (975)
Q Consensus 720 ~~~~--~~~~~---~~~~~~il~i~~~ll~~~~~~~~a~~ll~~ii~~~~~~~~~~~l~~il~~~l~~L----~~--~~~ 788 (975)
.... +.+.. .+.++.+++.|++.. +...+..++.+++.++..++ +.+.++++.++..++++. .. ...
T Consensus 740 ~~~~~l~~~~~~~~~~~l~~ll~~~~~~~-~~~~~~~~l~l~~~ii~~~~-~~~~~~l~~i~~~l~~~~~~~i~~~~~~~ 817 (1049)
T 3m1i_C 740 SKARNLDDVVKVLVEPLLNAVLEDYMNNV-PDARDAEVLNCMTTVVEKVG-HMIPQGVILILQSVFECTLDMINKDFTEY 817 (1049)
T ss_dssp HHCSCHHHHHHHTHHHHHHHHHHHHHHSC-GGGCCTHHHHHHHHHHHHHG-GGCHHHHHHHHHHHHHHHHHHHSSCSSSS
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHhCC-cccccHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHhcchhhC
Confidence 7653 12221 124555566666632 12124668999999999996 678899999988888874 11 233
Q ss_pred hhHHHHHHHHHHHHHHHhChHHHH
Q 002048 789 VKFVKSLLIFMSLFLVKHGPENLV 812 (975)
Q Consensus 789 ~~~~~~~i~~~~~~~~~~~~~~~l 812 (975)
+...+++.-++..+. .+.|..++
T Consensus 818 pd~~~~~f~ll~~i~-~~~~~~l~ 840 (1049)
T 3m1i_C 818 PEHRVEFYKLLKVIN-EKSFAAFL 840 (1049)
T ss_dssp HHHHHHHHHHHHHHH-HHCTHHHH
T ss_pred HHHHHHHHHHHHHHH-HhCHHHHH
Confidence 556666666555553 23455443
No 5
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=2.5e-43 Score=447.30 Aligned_cols=723 Identities=11% Similarity=0.113 Sum_probs=472.4
Q ss_pred hhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCC
Q 002048 5 QETLQHLSQCFLHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSG 84 (975)
Q Consensus 5 ~~~~~~l~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~ 84 (975)
+.+.++|.+++.++++||++.|++||++|++++++|+++..+.+++.. +.+..+|++|+++|||.|+++|.
T Consensus 3 ~~d~~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~-~~~~~vr~~aa~~L~~~i~~~w~-------- 73 (971)
T 2x1g_F 3 PIDIARLEEAVVSFYRSNSQNQAITHEWLTDAEASPQAWQFSWQLMQL-GKSQEVQFFGAITLHSKLMKHWH-------- 73 (971)
T ss_dssp --------CTHHHHHTSTTTC----CHHHHHTTTSTHHHHHHHHHTCT-TSCHHHHHHHHHHHHHHHHHCGG--------
T ss_pred hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHccHh--------
Confidence 357889999999999999999999999999999999999999999876 46899999999999999999997
Q ss_pred CCcCCCCHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhccccc--CCChhHHhHH
Q 002048 85 PTLAPILDAEKDQIKSLIVGLMLTS---TPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQ--SNNYVSINGI 159 (975)
Q Consensus 85 ~~~~~i~~e~K~~Ir~~ll~~l~~~---~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~--~~d~~~~~~~ 159 (975)
.+++++|..||+.|++.+.+. ++.||++++.+++.|++++|| +||++++++++.++++.. ..++.....+
T Consensus 74 ----~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~ 148 (971)
T 2x1g_F 74 ----EVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIM 148 (971)
T ss_dssp ----GCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHH
T ss_pred ----hCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhccccccCCCHHHHHHH
Confidence 589999999999999999873 678999999999999999999 999999999999976300 0024567788
Q ss_pred HHHHHHHHHhh-hccccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCCh---HHHHHHHHHHHHHHH-----
Q 002048 160 LGTANSIFKKF-RYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPV---ATLKLLFESQRLCCR----- 230 (975)
Q Consensus 160 L~~l~~i~k~~-~~~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~lk----- 230 (975)
|.+|..++++. +. ++...+.+++..+...+|.+++++.++.+...+. +.+. .....+++++...++
T Consensus 149 l~iL~~l~EEi~~~--~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~---~~~~~~~~~~~~al~~l~~~~~~~~ip 223 (971)
T 2x1g_F 149 LEVLTAIPEEAQVI--HTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNR---VWDAEAYSNMNRAVKCVGTWIKNIGYT 223 (971)
T ss_dssp HHHHHHHHHHHHHC--CCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTS---CCCHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHhHHHHhcc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---CCCccchhHHHHHHHHHHHHHhhCCcC
Confidence 99999888653 22 2222334555666777788888877766533211 1111 223333344332222
Q ss_pred ----------Hhhhc---------------ccCCCchHHHHhHHHHHHHHH----------------HHhcccCC---cc
Q 002048 231 ----------IFYSL---------------NFQELPEFFEDHMREWMTEFK----------------KYLTTNYP---AL 266 (975)
Q Consensus 231 ----------~~~~~---------------~~~~lp~~~~~~~~~~~~~~~----------------~~l~~~~~---~l 266 (975)
++. + +..+.|+..+..+.-+.+++. .+++...+ .+
T Consensus 224 ~~~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 302 (971)
T 2x1g_F 224 IEGCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTE 302 (971)
T ss_dssp GGGHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHH
Confidence 111 1 000122222222222222211 11110000 00
Q ss_pred cCCCCcCchHHHHHHHHHHHHHHHHHHhHHHHH-----------hhHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHh
Q 002048 267 ESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQ-----------GYLNDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTN 335 (975)
Q Consensus 267 ~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~f~-----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~fl~~ 335 (975)
.+.|.+. ......+++++..+.+.|.+.|. +++..+++.++......+.....+++...+++||.+
T Consensus 303 ~~~d~~~---~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~ 379 (971)
T 2x1g_F 303 WKRENDN---EDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYM 379 (971)
T ss_dssp SSSSCSC---SHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHH
T ss_pred hcccccc---hHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHH
Confidence 1111000 13444678888888877776554 344444454444332222223467899999999988
Q ss_pred h-c-h---------hhhhhcccCCCchhhHHHHhhcccCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHHH
Q 002048 336 V-S-T---------SVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGI 404 (975)
Q Consensus 336 ~-~-~---------~~~~~~~~~~~~l~~l~~~li~~~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L 404 (975)
+ + . +..+..+ ++++..++..++.+....+++|.+.| |++| + +++.+.|.++.+++..+
T Consensus 380 l~~~~~~~~~~~~~~~~~~~~--~~~~~~ll~~l~~~~~~p~~~~~~~~--d~~e--~-----~~f~~~R~~~~~~l~~~ 448 (971)
T 2x1g_F 380 LQDEVFAMSNDEQKHKCWEYI--KPLYAHLTRILVRKSEQPDEKSLAKW--SSDD--L-----ECFRCYRQDISDTFMYC 448 (971)
T ss_dssp HHHHHHC-------CHHHHHH--HHHHHHHHHHHHHHTSCCCTTTTSCS--CHHH--H-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccchHHHHHHH--HHHHHHHHHHHHHHhcCCCccccccc--CHhH--H-----HHHHHHHHHHHHHHHHH
Confidence 7 3 1 1122333 56777787766644433233333333 5554 1 34578999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCC
Q 002048 405 ATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNA 484 (975)
Q Consensus 405 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~ 484 (975)
+..+++.+++.+++++.+.++.+..++ .+|+.+||+++++|++++++.++. ...++.++. +++.+.+.+ .
T Consensus 449 ~~~~~~~~l~~~~~~l~~~l~~~~~~~-~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~--~l~~l~~~d--~ 518 (971)
T 2x1g_F 449 YDVLNDYILEILAAMLDEAIADLQRHP-THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMR--VLAEIPYEK--L 518 (971)
T ss_dssp HTTCTTHHHHHHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHTTTC-----------CHHHHHHH--HHHHSCTTT--S
T ss_pred HHHHhHHHHHHHHHHHHHHHHhccCCC-CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHH--HHHhcCccc--c
Confidence 999999999999999999998875443 689999999999999987764322 133555554 677777421 5
Q ss_pred cchhHhhHHHHHHHhhccCC--HhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHH
Q 002048 485 FPMLKAGALKFFTMFRIQIP--KIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLM 562 (975)
Q Consensus 485 ~~~Lr~ra~~~l~~f~~~~~--~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il 562 (975)
+|.+|.++||++|+|++.+. ++++..+++.++++| + ..|+.+||.|+.++++.. ...+.||+++++
T Consensus 519 ~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~---------~~~l~p~~~~ll 586 (971)
T 2x1g_F 519 NVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDC---------QLQLKPYADPLL 586 (971)
T ss_dssp CHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHC---------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHH---------HHhccccHHHHH
Confidence 89999999999999998653 578999999999999 3 789999999999999753 457899999999
Q ss_pred HHHHHhcCC--CCchhhHHHHHHHHHHHh-hc-cchhhhHHHHHHHHHHHHHHHHhCCC-CC---chhHHHHHHHHHHHH
Q 002048 563 TSLFNAFKF--PESEENQYIMKCIMRVLG-VA-EISNEVAAPCISGLTSILNEVCKNPK-SP---IFNHYLFESVAVLVR 634 (975)
Q Consensus 563 ~~L~~ll~~--~~~~~~~~l~~~l~~vi~-~~-~~i~p~~~~l~~~L~~~l~~~~~~~~-~~---~~~~~~~e~l~~li~ 634 (975)
+.|+.+++. .+......++++++.++. .+ ++..||+..+++.+...|+...+++. ++ ......+++++.+++
T Consensus 587 ~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~ 666 (971)
T 2x1g_F 587 NACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFS 666 (971)
T ss_dssp HHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHh
Confidence 999999987 344567789999999988 64 77889999999999988888776653 32 123567778888888
Q ss_pred Hhhhc--C-------cchHHHHHHhhHHHHHHHHhcc--cccchHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCccccc
Q 002048 635 RACQR--D-------PSLISAFEASILPSLQIILQND--VTEFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWK 703 (975)
Q Consensus 635 ~~~~~--~-------~~~~~~l~~~l~P~i~~il~~~--~~~~~~~~l~ll~~ll~~~~~~~~~~~~~lf~~l~~~~l~~ 703 (975)
.+... . ++....+.+.++|++..+++.. ..+++++++.++..++........|.++.+++.++.. +.
T Consensus 667 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~--~~ 744 (971)
T 2x1g_F 667 SLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVAS--FQ 744 (971)
T ss_dssp HHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHH--CC
T ss_pred hcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHH--Hh
Confidence 77321 0 3466788899999999998754 3368899999999987765444777778888777652 33
Q ss_pred cCCCccchHHHHHHHHccCccc--hhcc--CchHHHHHHHHHhhcCC-------CCc--chHHHHHHHHHHhcchhhH-h
Q 002048 704 RSSNVPALVRLLQAFLQKVPRE--IAQE--GKLREVLGIFNMLVLSP-------STD--EQGFYVLNTIVESLEYGVI-A 769 (975)
Q Consensus 704 ~~~~l~~~~~~L~~~i~~~~~~--~~~~--~~~~~il~i~~~ll~~~-------~~~--~~a~~ll~~ii~~~~~~~~-~ 769 (975)
... .+..+.++...+..-... .... +.+..++..+-.+++.. ..| ...+.++..++.+.|...+ .
T Consensus 745 ~~~-~~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s 823 (971)
T 2x1g_F 745 TRC-CAPTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDK 823 (971)
T ss_dssp --C-CHHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCT
T ss_pred cCC-chHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCC
Confidence 332 245667777776643221 1110 12223222222233321 123 4467999999999875433 3
Q ss_pred hh-HHHHHHHHHHHhhcC
Q 002048 770 QF-VPHIWGVLFTRLQNK 786 (975)
Q Consensus 770 ~~-l~~il~~~l~~L~~~ 786 (975)
+. ++.++..++..+...
T Consensus 824 ~~~l~~i~~~~~~~l~~~ 841 (971)
T 2x1g_F 824 TLAYDRLVFYAQRGMTLP 841 (971)
T ss_dssp TSCHHHHHHHHHHHHTSS
T ss_pred cccHHHHHHHHHHHcCCC
Confidence 67 899999988888743
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=1.7e-39 Score=408.50 Aligned_cols=677 Identities=13% Similarity=0.158 Sum_probs=479.6
Q ss_pred hHHHHHHHHHHh-cCCChHHHHHHHHHHHHHhcC--CChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCC
Q 002048 7 TLQHLSQCFLHT-LSPSPEPRRAAERSLAEMADR--PNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNS 83 (975)
Q Consensus 7 ~~~~l~~~L~~t-ls~d~~~r~~AE~~L~~~~~~--p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~ 83 (975)
|.++|.++|.++ +|||+++|++||++|++++++ |+|+..|++++.+.+.+..+|++|+++|||.|+++|+...+...
T Consensus 2 d~~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~ 81 (861)
T 2bpt_A 2 STAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFA 81 (861)
T ss_dssp CHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHH
T ss_pred CHHHHHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHH
Confidence 457899999999 999999999999999999986 99999999999987778999999999999999999964322100
Q ss_pred CCCcCC-CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCC-CCCCchHHHHHHHhcccccCCChhHHhHHHH
Q 002048 84 GPTLAP-ILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFP-KHWPTLLPELIANLKDAAQSNNYVSINGILG 161 (975)
Q Consensus 84 ~~~~~~-i~~e~K~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P-~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~ 161 (975)
..|.. +++++|..||+.+++.+.++++.+|++++.+++.|++.||| ++||++++.+.+.++++. |+..+++++.
T Consensus 82 -~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~---~~~~r~~al~ 157 (861)
T 2bpt_A 82 -QRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQ---PENVKRASLL 157 (861)
T ss_dssp -HHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTS---CHHHHHHHHH
T ss_pred -HhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCC---CHHHHHHHHH
Confidence 01344 99999999999999999998999999999999999999999 599999999999998763 6778899999
Q ss_pred HHHHHHHhhhccccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhcccCCCc
Q 002048 162 TANSIFKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELP 241 (975)
Q Consensus 162 ~l~~i~k~~~~~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~~~lp 241 (975)
++..+++++....+ ++....+.+++.+... +... +.+...+..+ ++++..+.
T Consensus 158 ~l~~l~~~~~~~~~----------~~~~~~~~ll~~l~~~---l~~~---~~~~~vr~~a-------l~~l~~~~----- 209 (861)
T 2bpt_A 158 ALGYMCESADPQSQ----------ALVSSSNNILIAIVQG---AQST---ETSKAVRLAA-------LNALADSL----- 209 (861)
T ss_dssp HHHHHHHTSSTTSS----------TTGGGHHHHHHHHHHH---HSTT---CCCHHHHHHH-------HHHHHHHG-----
T ss_pred HHHHHHHcCChhhh----------HHHHHHHHHHHHHHHh---hcCC---CCCHHHHHHH-------HHHHHHHH-----
Confidence 99999998743211 0122333444433322 2221 1133333333 33333321
Q ss_pred hHHHHhHH------HHHHHHHHHhcccCCcccCCCCcCchHHHHHHHHHHHHHHHHHHhHHHHHhhHH-HHHHHHHHHHh
Q 002048 242 EFFEDHMR------EWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQGYLN-DFALAVWTLLG 314 (975)
Q Consensus 242 ~~~~~~~~------~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~f~~~~~-~~~~~~~~~l~ 314 (975)
+++.+++. ..++.+...++ +. .+++|+++++++..+.+.+++.|.+++. .+++.++..+.
T Consensus 210 ~~~~~~~~~~~~~~~ll~~l~~~~~-------~~------~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~ 276 (861)
T 2bpt_A 210 IFIKNNMEREGERNYLMQVVCEATQ-------AE------DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMK 276 (861)
T ss_dssp GGCHHHHTSHHHHHHHHHHHHHHHT-------CS------CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTT
T ss_pred HHHHHHccChhHHHHHHHHHHHHhc-------CC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 11112211 12222222221 11 1689999999999999999887778777 77776665542
Q ss_pred ccCCCCcchHHHHHHHHHHHhh-chhhhhh---------------cccCCCchhhHHHHhhcccCCCChhhHHHHhhCHH
Q 002048 315 NVSQSSSRDSLAVTAIKFLTNV-STSVHHT---------------LFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYV 378 (975)
Q Consensus 315 ~~~~~~~~~~~~~~~l~fl~~~-~~~~~~~---------------~~~~~~~l~~l~~~li~~~l~l~~~d~e~we~dp~ 378 (975)
. ..+.+...+++||..+ +...+.. .+ ++.+..++..++ ..|. +.|. |
T Consensus 277 ~-----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~il~~ll-~~l~--~~~~-----d-- 339 (861)
T 2bpt_A 277 S-----PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFA--LSSIKDVVPNLL-NLLT--RQNE-----D-- 339 (861)
T ss_dssp C-----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHH--HHHHHHHHHHHH-HHTT--CCCC-----C--
T ss_pred C-----CcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHH--HHHHHHHHHHHH-HHHH--hccc-----c--
Confidence 2 3478999999999988 4332111 11 123344444322 3333 2221 1
Q ss_pred HHHhhcCCCCcchhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCcc
Q 002048 379 EFIRRDMEGSDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSI 458 (975)
Q Consensus 379 efv~~~~d~~d~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~ 458 (975)
++++.+++|.+|.+++..++..+++.+.+.+++++.+.++ +.+|+.|++++.++|.++.....
T Consensus 340 -------~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~------~~~~~~r~~a~~~l~~i~~~~~~---- 402 (861)
T 2bpt_A 340 -------PEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNIT------ADNWRNREAAVMAFGSIMDGPDK---- 402 (861)
T ss_dssp --------CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTT------CSSHHHHHHHHHHHHHTSSSSCH----
T ss_pred -------cccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcC------CCChhHHHHHHHHHHHHHcCCCH----
Confidence 1224578999999999999999998888989888887775 46799999999999999753310
Q ss_pred ccCcccHHHH---HHHhcccccCCCCCCCcchhHhhHHHHHHHhhccC-----CHhHHHhHHHHHHHhhcCCCchHHHHH
Q 002048 459 STDLVDVQSF---FTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQI-----PKIHAFQFFPDLVRFLGAESNVVHSYA 530 (975)
Q Consensus 459 ~~~~~~~~~~---l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~-----~~~~~~~~~~~l~~~L~~~~~~V~~~A 530 (975)
..+.++ +...+++.+.+ +++.+|.+++|++|++...+ +.+.+..+++.++.+|+++ ..||..|
T Consensus 403 ----~~~~~~l~~il~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a 473 (861)
T 2bpt_A 403 ----VQRTYYVHQALPSILNLMND----QSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNC 473 (861)
T ss_dssp ----HHHHHHHHHHHHHHHHGGGC----SCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHH
Confidence 112222 23345555655 58999999999999987643 3567999999999999886 8899999
Q ss_pred HHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCc--hhhHHHHHHHHHHHh-hccchhhhHHHHHHHHHH
Q 002048 531 ASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPES--EENQYIMKCIMRVLG-VAEISNEVAAPCISGLTS 607 (975)
Q Consensus 531 a~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~--~~~~~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~ 607 (975)
|.|+..++....+ ...+.+.||++.++..|+.+++..+. .....+++++..++. .++++.||...+++.+..
T Consensus 474 ~~al~~l~~~~~~-----~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~ 548 (861)
T 2bpt_A 474 SWTIINLVEQLAE-----ATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMD 548 (861)
T ss_dssp HHHHHHHHHHHSS-----SSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc-----ccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHH
Confidence 9999999876420 12467899999999999999986542 234467788888888 888888998888888777
Q ss_pred HHHHHHh------C-C---CCCchhHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhcccc-cchHHHHHHHHH
Q 002048 608 ILNEVCK------N-P---KSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDVT-EFLPYAFQLLAQ 676 (975)
Q Consensus 608 ~l~~~~~------~-~---~~~~~~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~~~-~~~~~~l~ll~~ 676 (975)
.+..... + + ..+.....++++++.+++.++. .+..+.+.++|.+..+++.... ...+.++..++.
T Consensus 549 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~----~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~ 624 (861)
T 2bpt_A 549 KLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS----SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISA 624 (861)
T ss_dssp HHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG----GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHH
T ss_pred HHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHH
Confidence 6654310 0 0 0122345788899999988732 3345566788888888876655 677889999998
Q ss_pred HHHhcCCCCchhHHHHHHhhcCcccccc--CCCccchHHHHHHHHccCccchhccCchHHHHHHHHHhhcCCC--C--cc
Q 002048 677 LIELNRPPLSSNYMQIFNLLLSPDSWKR--SSNVPALVRLLQAFLQKVPREIAQEGKLREVLGIFNMLVLSPS--T--DE 750 (975)
Q Consensus 677 ll~~~~~~~~~~~~~lf~~l~~~~l~~~--~~~l~~~~~~L~~~i~~~~~~~~~~~~~~~il~i~~~ll~~~~--~--~~ 750 (975)
+.......+.+.+..++|.++.. ++. ......++.++..+.....+.+. ++...++..+.+.+.+.. . ..
T Consensus 625 l~~~~~~~~~~~l~~i~~~l~~~--l~~~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~~~vr~ 700 (861)
T 2bpt_A 625 LAASLGKGFEKYLETFSPYLLKA--LNQVDSPVSITAVGFIADISNSLEEDFR--RYSDAMMNVLAQMISNPNARRELKP 700 (861)
T ss_dssp HHHHHGGGGHHHHHHHHHHHHHH--HHCTTSHHHHHHHHHHHHHHHHTGGGGH--HHHHHHHHHHHHHHHCTTCCTTHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHhchhcc--chHHHHHHHHHHHhCCccccHhhhH
Confidence 88876544666666777777763 222 22344566677777666555543 467788877777776543 2 24
Q ss_pred hHHHHHHHHHHhcchhhHhhhHHHHHHHHHHHhhc
Q 002048 751 QGFYVLNTIVESLEYGVIAQFVPHIWGVLFTRLQN 785 (975)
Q Consensus 751 ~a~~ll~~ii~~~~~~~~~~~l~~il~~~l~~L~~ 785 (975)
.++..++.++..++ +.+.+|++.++..++..+..
T Consensus 701 ~~~~~l~~l~~~~~-~~~~~~l~~~l~~l~~~~~~ 734 (861)
T 2bpt_A 701 AVLSVFGDIASNIG-ADFIPYLNDIMALCVAAQNT 734 (861)
T ss_dssp HHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHhc
Confidence 57888999999986 67899999999999988774
No 7
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=2.7e-35 Score=365.13 Aligned_cols=726 Identities=11% Similarity=0.160 Sum_probs=444.7
Q ss_pred hhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCC
Q 002048 5 QETLQHLSQCFLHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSG 84 (975)
Q Consensus 5 ~~~~~~l~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~ 84 (975)
|.|++.|.+++...++|+++.|++|+++|++++++|+++..+.+++.++ .+..+|++|+++|||.|+++|.
T Consensus 12 ~~dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~s-~~~~vR~faa~~Lk~~I~~~W~-------- 82 (1023)
T 4hat_C 12 DLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFS-TNPQSKFIALSILDKLITRKWK-------- 82 (1023)
T ss_dssp CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCTTGGGGHHHHHHHC-CCHHHHHHHHHHHHHHHHHHGG--------
T ss_pred CCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcCccHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhhhh--------
Confidence 4688999999999999999999999999999999999999999999764 4789999999999999999997
Q ss_pred CCcCCCCHHHHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccCCChhH
Q 002048 85 PTLAPILDAEKDQIKSLIVGLMLTS---------TPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVS 155 (975)
Q Consensus 85 ~~~~~i~~e~K~~Ir~~ll~~l~~~---------~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~~~ 155 (975)
.+++++|..||+.+++.+.+. ++.++++++.+++.|+++|||++||++++++++.++++ +..
T Consensus 83 ----~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~-----~~~ 153 (1023)
T 4hat_C 83 ----LLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSS-----VNV 153 (1023)
T ss_dssp ----GSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTC-----HHH
T ss_pred ----cCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcCC-----HHH
Confidence 699999999999999998762 24588889999999999999999999999999999754 456
Q ss_pred HhHHHHHHHHHHHhhhc---cccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHh
Q 002048 156 INGILGTANSIFKKFRY---QFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIF 232 (975)
Q Consensus 156 ~~~~L~~l~~i~k~~~~---~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~ 232 (975)
...+|.+|..+.++... .--+.+.+.+++..+...+|.++.++..+.+. . .+...... ++|++
T Consensus 154 ~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~---~----~~~~l~~~-------~L~~l 219 (1023)
T 4hat_C 154 CENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQ---G----ASSSLIVA-------TLESL 219 (1023)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C----SSCHHHHH-------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC---C----CCHHHHHH-------HHHHH
Confidence 77788888888877321 10012234467777777788888887776642 1 11121112 22222
Q ss_pred hhc-ccCCCch-----------------------------------------HHHHhHHHHHHHHHHHh-cccCCc----
Q 002048 233 YSL-NFQELPE-----------------------------------------FFEDHMREWMTEFKKYL-TTNYPA---- 265 (975)
Q Consensus 233 ~~~-~~~~lp~-----------------------------------------~~~~~~~~~~~~~~~~l-~~~~~~---- 265 (975)
.+. .+.++.. .+.+.+..+.+.+...+ +.-.|.
T Consensus 220 ~s~l~WI~i~~i~~~~ll~~l~~~~L~~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l 299 (1023)
T 4hat_C 220 LRYLHWIPYRYIYETNILELLSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADL 299 (1023)
T ss_dssp HHHTTTSCTHHHHSSSHHHHHHTHHHHSHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCH
T ss_pred HHHHHhCCHHHhcchhHHHHHHHHHcCCHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchH
Confidence 222 1111110 01111111111111111 000010
Q ss_pred ---cc-CCCCcCchHHHHHHHHHHHHHHHHHHhHHHHH--hhHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHhhchh
Q 002048 266 ---LE-STSDGLGLVDGLRAAVCENISLYMKMNEEEFQ--GYLNDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNVSTS 339 (975)
Q Consensus 266 ---l~-~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~f~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~fl~~~~~~ 339 (975)
+. ++++ ....-+.+++++..+.+.|...+. +....++....+.+...+.. ...++...+++||......
T Consensus 300 ~~~~~~~~~~----D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~-~d~ei~~~tl~FW~~L~~~ 374 (1023)
T 4hat_C 300 KATYANANGN----DQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKI-EERELFKTTLDYWHNLVAD 374 (1023)
T ss_dssp HHHHHHTCTT----HHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccc----hHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHHHHH
Confidence 00 0000 012222344444444444432221 22233444444444443332 2456779999999988222
Q ss_pred hh-----hhcccCCCchhhHHHHhhcccCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHhhhhhHH
Q 002048 340 VH-----HTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQHVME 414 (975)
Q Consensus 340 ~~-----~~~~~~~~~l~~l~~~li~~~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~~~~~~~~~ 414 (975)
.| +..| ++.+.+++..++ ..|.+.++++ .+++|-.+++|+..++.|....=+...++|..++...+..+.+
T Consensus 375 l~~e~~~~~~~--~~~~~~L~~vli-~km~~P~e~~-ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~ 450 (1023)
T 4hat_C 375 LFYEPLKKHIY--EEICSQLRLVII-ENMVRPEEVL-VVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEE 450 (1023)
T ss_dssp HTTSTTTGGGG--HHHHHHHHHHHH-HSCCCCTTCC-EEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHhchHHHHHH--HHHHHHHHHHHH-HhcCCCcccc-cCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 22 4455 678888887554 7788877543 3455544555443322222111122237888888877777777
Q ss_pred HHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCC-C----CCCCcchhH
Q 002048 415 TVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQS-P----DVNAFPMLK 489 (975)
Q Consensus 415 ~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~-~----~~~~~~~Lr 489 (975)
.+++.+.+.+. +++.+|+.+||+++++|++++.+.+. ...+++.+. +|.|-+ + +.++.+.+|
T Consensus 451 ~~~~~l~~~l~----~~~~~W~~~EA~~~a~gaIa~~~~~~--------~e~~~l~~v-i~~Ll~l~~~~~~~d~k~~v~ 517 (1023)
T 4hat_C 451 IMISKLARQID----GSEWSWHNINTLSWAIGSISGTMSED--------TEKRFVVTV-IKDLLDLCVKKRGKDNKAVVA 517 (1023)
T ss_dssp HHHHHHHHHHS----STTCCHHHHHHHHHHHHHTTTSSCHH--------HHHHHHHHH-HHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHHHHHhc----CCCCCHHHHHHHHHHHHHHHcCCCch--------hHHHHHHHH-HHHHHHhhhccccCcchHHHH
Confidence 77777765543 23468999999999999998644210 012233222 222211 1 001346677
Q ss_pred hhHHHHHHHhhccC--CHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHH
Q 002048 490 AGALKFFTMFRIQI--PKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFN 567 (975)
Q Consensus 490 ~ra~~~l~~f~~~~--~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ 567 (975)
..+||++|+|.+++ .++.+..+++.++..|.+++..|+..||.|+.++++.+... ..........||++++++.+..
T Consensus 518 ~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~-l~~~~~~e~~p~~~~il~~l~~ 596 (1023)
T 4hat_C 518 SDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYH-FVIQQPRESEPFIQTIIRDIQK 596 (1023)
T ss_dssp HHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHH-HHSCCTTCSSCHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH-hhccCCCCCchhHHHHHHHHHH
Confidence 78999999998865 57899999999999999888889999999999999865310 0011234568999999999999
Q ss_pred hcCCCCchhhHHHHHHHHHHHh-hccc--hhhhHHHHHHHHHHHHHHHH----hCCCC---C---chhHHHHHHHHHHHH
Q 002048 568 AFKFPESEENQYIMKCIMRVLG-VAEI--SNEVAAPCISGLTSILNEVC----KNPKS---P---IFNHYLFESVAVLVR 634 (975)
Q Consensus 568 ll~~~~~~~~~~l~~~l~~vi~-~~~~--i~p~~~~l~~~L~~~l~~~~----~~~~~---~---~~~~~~~e~l~~li~ 634 (975)
.....+......+.++++.++. .+.. ...+...+++.+...|+++. ++|+- + .-...+++|++.+..
T Consensus 597 ~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~ 676 (1023)
T 4hat_C 597 TTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCT 676 (1023)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHH
Confidence 9887665556678899999998 5432 33455566666666665544 45431 1 111345566555555
Q ss_pred HhhhcCcchHHHH--------------------------------------------------------------HHhh-
Q 002048 635 RACQRDPSLISAF--------------------------------------------------------------EASI- 651 (975)
Q Consensus 635 ~~~~~~~~~~~~l--------------------------------------------------------------~~~l- 651 (975)
+++. .....+ ...+
T Consensus 677 ~lg~---~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~ 753 (1023)
T 4hat_C 677 SMGA---DFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLV 753 (1023)
T ss_dssp HHGG---GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTH
T ss_pred HhcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhH
Confidence 5421 010000 0011
Q ss_pred HHHHHHHHhc---ccccc-hHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCccc--c-c----cCCCccchHHHHHHHHc
Q 002048 652 LPSLQIILQN---DVTEF-LPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDS--W-K----RSSNVPALVRLLQAFLQ 720 (975)
Q Consensus 652 ~P~i~~il~~---~~~~~-~~~~l~ll~~ll~~~~~~~~~~~~~lf~~l~~~~l--~-~----~~~~l~~~~~~L~~~i~ 720 (975)
-|++..++.. ...+. -++++.+.+.++..-...+.+.+..+|..+..+++ . + .++......+++++++.
T Consensus 754 ~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~ 833 (1023)
T 4hat_C 754 EPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINE 833 (1023)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHH
Confidence 1222222221 00011 15677777777776543355555555555544432 1 1 23456778899999999
Q ss_pred cCccchhccC--chHHHHHHHHHhhcCCCCc--chHHHHHHHHHHhcch--------hhHhhhHHHHHHHHHHHhhcCch
Q 002048 721 KVPREIAQEG--KLREVLGIFNMLVLSPSTD--EQGFYVLNTIVESLEY--------GVIAQFVPHIWGVLFTRLQNKRT 788 (975)
Q Consensus 721 ~~~~~~~~~~--~~~~il~i~~~ll~~~~~~--~~a~~ll~~ii~~~~~--------~~~~~~l~~il~~~l~~L~~~~~ 788 (975)
+++..|++-+ ....+++.+--.+.+...+ ..|++++..++.++.. ..+..|.-.++..++.-+.+..+
T Consensus 834 ~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~td~~h 913 (1023)
T 4hat_C 834 KSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDH 913 (1023)
T ss_dssp HCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 9999888743 4555665544445544433 4577777777776531 12245555666666666665443
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=2.2e-35 Score=371.84 Aligned_cols=686 Identities=15% Similarity=0.168 Sum_probs=464.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHhcC--CChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCCCCc
Q 002048 10 HLSQCFLHTLSPSPEPRRAAERSLAEMADR--PNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPTL 87 (975)
Q Consensus 10 ~l~~~L~~tls~d~~~r~~AE~~L~~~~~~--p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~~~ 87 (975)
+|.++|++++|||+++|++||++|+++..+ |+|+..|++++.+.+.+..+|++|+++|||.|+..|........ ..|
T Consensus 2 ~l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~-~~w 80 (876)
T 1qgr_A 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ-QRW 80 (876)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH-HHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHH-hhh
Confidence 478999999999999999999999999986 99999999999987678999999999999998644321000000 002
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCC-CCCCchHHHHHHHhcccccCCChhHHhHHHHHHHHH
Q 002048 88 APILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFP-KHWPTLLPELIANLKDAAQSNNYVSINGILGTANSI 166 (975)
Q Consensus 88 ~~i~~e~K~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P-~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i 166 (975)
..+++++|..||+.+++.+.+++..+ ++++.+++.|+++++| ++||++++.+.+.++++. .++..+.+++.+|..+
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~--~~~~~r~~al~~l~~l 157 (876)
T 1qgr_A 81 LAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPN--STEHMKESTLEAIGYI 157 (876)
T ss_dssp HTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTT--CCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHH
Confidence 36999999999999999998877778 9999999999999999 899999999999997651 0456788999999999
Q ss_pred HHhhhccccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhcccCCCchHHH-
Q 002048 167 FKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFE- 245 (975)
Q Consensus 167 ~k~~~~~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~~~lp~~~~- 245 (975)
++.+. .+. +....+.+++.+.+.. ... ..+...+..+ ++++..+... ++..+.
T Consensus 158 ~~~~~-----~~~-------~~~~~~~ll~~l~~~l---~~~---~~~~~vr~~a-------~~~l~~~~~~-~~~~~~~ 211 (876)
T 1qgr_A 158 CQDID-----PEQ-------LQDKSNEILTAIIQGM---RKE---EPSNNVKLAA-------TNALLNSLEF-TKANFDK 211 (876)
T ss_dssp HHHSC-----HHH-------HGGGHHHHHHHHHHHH---STT---CSCHHHHHHH-------HHHHHHHGGG-CHHHHTS
T ss_pred HHhcC-----Hhh-------HHhHHHHHHHHHHHhh---cCC---CCCHHHHHHH-------HHHHHHHHHH-HHHHHHh
Confidence 98753 111 2233444444443322 121 1123333333 3333333211 111111
Q ss_pred HhH-HHHHHHHHHHhcccCCcccCCCCcCchHHHHHHHHHHHHHHHHHHhHHHHHhhHH-HHHHHHHHHHhccCCCCcch
Q 002048 246 DHM-REWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQGYLN-DFALAVWTLLGNVSQSSSRD 323 (975)
Q Consensus 246 ~~~-~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~f~~~~~-~~~~~~~~~l~~~~~~~~~~ 323 (975)
+.. ..+++.+...++ +.+ .+++..+++++..+...+++.|.+++. .+++.++..+. ...+
T Consensus 212 ~~~~~~il~~l~~~~~-------~~~------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~ 273 (876)
T 1qgr_A 212 ESERHFIMQVVCEATQ-------CPD------TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK-----SDID 273 (876)
T ss_dssp HHHHHHHHHHHHHHTT-------CSS------HHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT-----CSSH
T ss_pred HHHHHHHHHHHHHHcC-------CCC------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc-----CCch
Confidence 100 112333333221 111 578899999999999999888888887 78887777542 2357
Q ss_pred HHHHHHHHHHHhh-chhhh----------------hhccc-CCCchhhHHHHhhcccCCCChhhHHHHhhCHHHHHhhcC
Q 002048 324 SLAVTAIKFLTNV-STSVH----------------HTLFA-GEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDM 385 (975)
Q Consensus 324 ~~~~~~l~fl~~~-~~~~~----------------~~~~~-~~~~l~~l~~~li~~~l~l~~~d~e~we~dp~efv~~~~ 385 (975)
.+...+++||..+ +.... +..+. .++++..++..+ +..+.-.++ |
T Consensus 274 ~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l-l~~l~~~~~-------d--------- 336 (876)
T 1qgr_A 274 EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL-TQTLTKQDE-------N--------- 336 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHH-HHHTTCCCS-------S---------
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHH-HHHhhcccc-------c---------
Confidence 8899999999988 43210 00000 011234444322 233332111 1
Q ss_pred CCCcchhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccH
Q 002048 386 EGSDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDV 465 (975)
Q Consensus 386 d~~d~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~ 465 (975)
++++.+++|.+|..++..++..+++.+.+.+++++.+.++ +.+|+.|++++.++|.++..+.. ..+
T Consensus 337 ~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~------~~~~~~r~~a~~~l~~i~~~~~~--------~~~ 402 (876)
T 1qgr_A 337 DDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIK------NPDWRYRDAAVMAFGCILEGPEP--------SQL 402 (876)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTT------CSSHHHHHHHHHHHHHTSSSSCH--------HHH
T ss_pred ccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHcc------CCChHHHHHHHHHHHHHHcCCCH--------HHH
Confidence 1234678999999999999999998888888888877664 46899999999999998753310 012
Q ss_pred HHH---HHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCC-----HhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 002048 466 QSF---FTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIP-----KIHAFQFFPDLVRFLGAESNVVHSYAASCIEKL 537 (975)
Q Consensus 466 ~~~---l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~-----~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~ 537 (975)
.++ +...+++.+.+ +++.+|.+|+|.+++|...++ ++.+..+++.++..|+++ ..||..|+.||..+
T Consensus 403 ~~~~~~~l~~l~~~l~d----~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l 477 (876)
T 1qgr_A 403 KPLVIQAMPTLIELMKD----PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSL 477 (876)
T ss_dssp HHHHHHHHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH
Confidence 222 23344555555 579999999999999987653 367899999999999985 88999999999999
Q ss_pred HccccCC---Ccc--ccccccccchHHHHHHHHHHhcCCCCc---hhhHHHHHHHHHHHh-hccchhhhHHHHHHHHHHH
Q 002048 538 LQVKDEG---GKS--RYNSADITPYLSVLMTSLFNAFKFPES---EENQYIMKCIMRVLG-VAEISNEVAAPCISGLTSI 608 (975)
Q Consensus 538 ~~~~~~~---~~~--~~~~~~l~p~l~~il~~L~~ll~~~~~---~~~~~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~~ 608 (975)
+...... +.. ....+.+.||++.++..|+.++...+. .-...+++++..++. .+.+..||...+++.+...
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~ 557 (876)
T 1qgr_A 478 AEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMER 557 (876)
T ss_dssp HHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHH
Confidence 8753200 000 012356899999999999999977532 123457889988888 8888888888888888776
Q ss_pred HHHHHh------CCCC----CchhHHHHHHHHHHHHHhhhcCc-chHHHHHHhhHHHHHHHHhccc--ccchHHHHHHHH
Q 002048 609 LNEVCK------NPKS----PIFNHYLFESVAVLVRRACQRDP-SLISAFEASILPSLQIILQNDV--TEFLPYAFQLLA 675 (975)
Q Consensus 609 l~~~~~------~~~~----~~~~~~~~e~l~~li~~~~~~~~-~~~~~l~~~l~P~i~~il~~~~--~~~~~~~l~ll~ 675 (975)
+....+ +.++ +.....++.+++.++..+ + +.+..+.+.++|.+..+++... ....+.++..++
T Consensus 558 l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~----~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~ 633 (876)
T 1qgr_A 558 LQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKV----QHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVS 633 (876)
T ss_dssp HHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTS----CHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHh----ChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHH
Confidence 655421 1122 122345677777777664 3 4455667788888888887653 245678999999
Q ss_pred HHHHhcCCCCchhHHHHHHhhcCccccc-cCCCccchHHHHHHHHccCccchhccCchHHHHHHHHHhhcCCCC--c--c
Q 002048 676 QLIELNRPPLSSNYMQIFNLLLSPDSWK-RSSNVPALVRLLQAFLQKVPREIAQEGKLREVLGIFNMLVLSPST--D--E 750 (975)
Q Consensus 676 ~ll~~~~~~~~~~~~~lf~~l~~~~l~~-~~~~l~~~~~~L~~~i~~~~~~~~~~~~~~~il~i~~~ll~~~~~--~--~ 750 (975)
.++...+..+.|.+..++|.+....-.. ..+....++.++..++....+.+. ++...++..+.+.+.+... + .
T Consensus 634 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~~i~~~l~~~l~~~~~~~~~~~ 711 (876)
T 1qgr_A 634 TLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNII--PFCDEVMQLLLENLGNENVHRSVKP 711 (876)
T ss_dssp HHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGH--HHHHHHHHHHHHHHTCTTSCGGGHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHhCCccccHHhhH
Confidence 9888755446666667777766531111 122344566667766665444443 3678888877777765221 2 4
Q ss_pred hHHHHHHHHHHhcchhhHhhhHHHHHHHHHHHhhcC
Q 002048 751 QGFYVLNTIVESLEYGVIAQFVPHIWGVLFTRLQNK 786 (975)
Q Consensus 751 ~a~~ll~~ii~~~~~~~~~~~l~~il~~~l~~L~~~ 786 (975)
.++..++.++..++ +.+.+|++.++..+...+...
T Consensus 712 ~~~~~l~~i~~~~g-~~~~~~l~~~~~~l~~~~~~~ 746 (876)
T 1qgr_A 712 QILSVFGDIALAIG-GEFKKYLEVVLNTLQQASQAQ 746 (876)
T ss_dssp HHHHHHHHHHHHHG-GGGGGGHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhc-hhHHHHHHHHHHHHHHHHhcc
Confidence 57788899999886 558889999999988877643
No 9
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=2.7e-32 Score=335.53 Aligned_cols=697 Identities=12% Similarity=0.185 Sum_probs=419.6
Q ss_pred hhHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCCC
Q 002048 6 ETLQHLSQCFLHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGP 85 (975)
Q Consensus 6 ~~~~~l~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~ 85 (975)
.|.+.|.+++.+.++|+++.|++|++.|++++++|+++..+.+++.+ +.+..+|++|+..|||.|+++|.
T Consensus 25 ~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~-s~~~~vR~fAa~~L~~~I~~~W~--------- 94 (1073)
T 3gjx_A 25 LDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEF-SQNMNTKYYGLQILENVIKTRWK--------- 94 (1073)
T ss_dssp CSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCHHHHHTCC----CCSHHHHHHHHHHHHHHHHHTGG---------
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCchHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhhhh---------
Confidence 57899999999999999999999999999999999999999998876 45889999999999999999997
Q ss_pred CcCCCCHHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccCCChhHH
Q 002048 86 TLAPILDAEKDQIKSLIVGLMLT---------STPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSI 156 (975)
Q Consensus 86 ~~~~i~~e~K~~Ir~~ll~~l~~---------~~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~~~~ 156 (975)
.+++++|..||+.+++.+.+ .++.++++++.+++.|+++|||++||++++++++.+++ ++...
T Consensus 95 ---~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~-----~~~~~ 166 (1073)
T 3gjx_A 95 ---ILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT-----SESLC 166 (1073)
T ss_dssp ---GSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH-----CHHHH
T ss_pred ---hCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC-----CHHHH
Confidence 69999999999999999875 13568899999999999999999999999999998864 44567
Q ss_pred hHHHHHHHHHHHhhh-c---cccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHh
Q 002048 157 NGILGTANSIFKKFR-Y---QFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIF 232 (975)
Q Consensus 157 ~~~L~~l~~i~k~~~-~---~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~ 232 (975)
..+|.+|..+.++.- . .. +.+.+.+++..+...+|.+++++..+.+. ..+......+++ +++.|
T Consensus 167 ~~~L~IL~~L~EEV~d~~~~~l-~~~r~~~lk~~L~~~~~~Il~ll~~iL~~-------~~~~~lv~~~L~----~L~~~ 234 (1073)
T 3gjx_A 167 QNNMVILKLLSEEVFDFSSGQI-TQVKAKHLKDSMCNEFSQIFQLCQFVMEN-------SQNAPLVHATLE----TLLRF 234 (1073)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHB-CHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------CCCHHHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------cCCHHHHHHHHH----HHHHH
Confidence 789999999998732 1 01 11224567777888888888888776542 122222222222 22222
Q ss_pred hhccc-----------------CCCchHHHHh---H------------HHHHHHHHHHh---cccCCc---cc-----CC
Q 002048 233 YSLNF-----------------QELPEFFEDH---M------------REWMTEFKKYL---TTNYPA---LE-----ST 269 (975)
Q Consensus 233 ~~~~~-----------------~~lp~~~~~~---~------------~~~~~~~~~~l---~~~~~~---l~-----~~ 269 (975)
-++.. ...|++.... + .....+|..++ ..-.|. +. +.
T Consensus 235 ~sWI~i~~i~~~~ll~~L~~~~L~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~ 314 (1073)
T 3gjx_A 235 LNWIPLGYIFETKLISTLIYKFLNVPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGK 314 (1073)
T ss_dssp TTTSCTHHHHSSSHHHHHHHHTSSSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCC
T ss_pred HHhcCHHHhccchHHHHHHHHhcCChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccc
Confidence 22110 0011111000 0 01111121111 111110 10 00
Q ss_pred CCcCchHHHHHHHHHHHHHHHHHHhHHHHH--hhHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHhhchhhh------
Q 002048 270 SDGLGLVDGLRAAVCENISLYMKMNEEEFQ--GYLNDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNVSTSVH------ 341 (975)
Q Consensus 270 ~~~~~~~~~~k~~~~~~l~~~~~~~~~~f~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~fl~~~~~~~~------ 341 (975)
++ ....-..+++++..+.+.|..-.. |-....+....+.+..++.. ...++...+++||.......|
T Consensus 315 ~~----d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~-~d~ei~kitf~fW~~L~~~L~~e~~~~ 389 (1073)
T 3gjx_A 315 DD----EQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEV-EETEIFKICLEYWNHLAAELYRESPFS 389 (1073)
T ss_dssp TT----HHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred hh----hHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 00 011222445555555555443222 11223344444444444433 246788999999997722222
Q ss_pred ------------------hhcccCCCchhhHHHHhhcccCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHH
Q 002048 342 ------------------HTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKG 403 (975)
Q Consensus 342 ------------------~~~~~~~~~l~~l~~~li~~~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~ 403 (975)
+..| .+.+..+.. +++..|...+|... -|+|..|++|+...+.+.-+.+.+-.+.+..
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~y--~~i~~~L~~-vlI~~m~~P~ev~i-~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~ 465 (1073)
T 3gjx_A 390 TSASPLLSGSQHFDIPPRRQLY--LTVLSKVRL-LMVSRMAKPEEVLV-VENDQGEVVREFMKDTDSINLYKNMRETLVY 465 (1073)
T ss_dssp CCCSSCTTSSCCSCSCHHHHTT--HHHHHHHHH-HHHHTCCCSCCEEE-EECSSSCEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhHHHHH--HHHHHHHHH-HHHHhcCCCccccc-cCcccchHHHHHHhhcchHHHHHHHHHHHHH
Confidence 1223 445666665 34477776654322 2445555665544444444567777777777
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHH-HHHHHhcccccCC-CC
Q 002048 404 IATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQ-SFFTSVIVPELQS-PD 481 (975)
Q Consensus 404 L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~-~~l~~~v~p~l~~-~~ 481 (975)
++...++.+...+++.+.+.++ ++..+|...||+++++|++|..+.+ +.+ .++.+. ++.|-. ++
T Consensus 466 lt~l~~~~~~~i~~~~l~~~~~----~~~~sW~~lea~~~aigaIag~~~~---------~~E~~~Lp~v-i~~Ll~L~e 531 (1073)
T 3gjx_A 466 LTHLDYVDTEIIMTKKLQNQVN----GTEWSWKNLNTLCWAIGSISGAMHE---------EDEKRFLVTV-IKDLLGLCE 531 (1073)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHT----SCCCCHHHHHHHHHHHHHTTTSSCH---------HHHHHHHHHH-HHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHhc----CCCCCHHHHhHHHHHHHHHHCcCCc---------ccccchHHHH-HHHHhcccc
Confidence 7766677777777776665443 2245799999999999999843311 112 333322 222211 10
Q ss_pred C----CCcchhHhhHHHHHHHhhccC--CHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCcccccccccc
Q 002048 482 V----NAFPMLKAGALKFFTMFRIQI--PKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADIT 555 (975)
Q Consensus 482 ~----~~~~~Lr~ra~~~l~~f~~~~--~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~ 555 (975)
. +..+.++..+||++|+|..++ .++.+..++..++..+.+++..|+..||.|+..++..+... +.........
T Consensus 532 ~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~-lv~~~~~e~~ 610 (1073)
T 3gjx_A 532 QKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRH-FVQVQVGEVM 610 (1073)
T ss_dssp HSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGG-GTSCCTTCSS
T ss_pred cccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH-Hhhccccccc
Confidence 0 013467777899999998865 57899999999999999999999999999999999876421 1111234568
Q ss_pred chHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh-hccch--hhhHHHHHHHHHHHHHHHHh----CCC---CCc---hh
Q 002048 556 PYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG-VAEIS--NEVAAPCISGLTSILNEVCK----NPK---SPI---FN 622 (975)
Q Consensus 556 p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~-~~~~i--~p~~~~l~~~L~~~l~~~~~----~~~---~~~---~~ 622 (975)
||+.++++.+-......+......+.++++.++. .+.+. ..+...+++.+...|+.+.+ |++ |+. -.
T Consensus 611 p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l 690 (1073)
T 3gjx_A 611 PFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQL 690 (1073)
T ss_dssp CHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHH
Confidence 9999999999998877765555577889999988 66543 33445566655555655542 332 221 11
Q ss_pred HHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhcccccchHHHHHHHHHHHHhcCCCCc-hhHHHHHHhhcCccc
Q 002048 623 HYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRPPLS-SNYMQIFNLLLSPDS 701 (975)
Q Consensus 623 ~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~~~~~~~-~~~~~lf~~l~~~~l 701 (975)
..+++|...+..++ ...+.|.+..++. +...+|.-.-+.++..+.....-.. .....
T Consensus 691 ~~il~~n~~v~~~~-----------g~~f~~~~~~i~~-~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~---------- 748 (1073)
T 3gjx_A 691 GSILKTNVRACKAV-----------GHPFVIQLGRIYL-DMLNVYKCLSENISAAIQANGEMVTKQPLIR---------- 748 (1073)
T ss_dssp HHHHHHHHHHHHHH-----------CGGGHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCGGGGSSHHHH----------
T ss_pred HHHHhhhHHHHhhc-----------chhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCchhhccHHHH----------
Confidence 23444444444443 1223333333221 1111222222222222211110000 00000
Q ss_pred cccCCCccchHHHHHHHHccCcc--chhcc---CchHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcchhhHhhhHHHHH
Q 002048 702 WKRSSNVPALVRLLQAFLQKVPR--EIAQE---GKLREVLGIFNMLVLSPSTDEQGFYVLNTIVESLEYGVIAQFVPHIW 776 (975)
Q Consensus 702 ~~~~~~l~~~~~~L~~~i~~~~~--~~~~~---~~~~~il~i~~~ll~~~~~~~~a~~ll~~ii~~~~~~~~~~~l~~il 776 (975)
.-...-.++++++..|+.++.+ .+..+ +-++.+++-+.+.. +...+.+.+.++.+++.+++ ..+.+.++.|+
T Consensus 749 -~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~-p~~r~~evL~l~s~iv~k~~-~~~~~~~~~il 825 (1073)
T 3gjx_A 749 -SMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNV-PAAREPEVLSTMAIIVNKLG-GHITAEIPQIF 825 (1073)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSC-GGGCCTHHHHHHHHHHHHHG-GGTGGGHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCC-cccccHHHHHHHHHHHHHHH-hhcchhHHHHH
Confidence 0011234567889999988753 22221 23444445555422 22235778899999999985 56778888887
Q ss_pred HHHHH
Q 002048 777 GVLFT 781 (975)
Q Consensus 777 ~~~l~ 781 (975)
.+++.
T Consensus 826 ~~vf~ 830 (1073)
T 3gjx_A 826 DAVFE 830 (1073)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77644
No 10
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=5.6e-30 Score=317.77 Aligned_cols=651 Identities=11% Similarity=0.105 Sum_probs=402.1
Q ss_pred hhhHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHhcCCChHHHHHHHHHhcCc-ChHHHHHHHHHHHhhhhcccCCCCCC
Q 002048 5 QETLQHLSQCFLHTLSP--SPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTI-DEQIRHAAAVNFKNHLRFRWAPASDR 81 (975)
Q Consensus 5 ~~~~~~l~~~L~~tls~--d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~-~~~vRq~Aai~lKn~I~~~W~~~~~~ 81 (975)
|++.+++.++++.+++| |++.|++|++.|++++++|+++..+..++.+.+. +..+|++|+.+|||.|+ .
T Consensus 2 ~m~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~---~----- 73 (980)
T 3ibv_A 2 PMSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR---E----- 73 (980)
T ss_dssp -CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH---H-----
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH---h-----
Confidence 67889999999999998 6999999999999999999999999999988653 89999999999999999 1
Q ss_pred CCCCCcCCCCHH----HHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccCCC
Q 002048 82 NSGPTLAPILDA----EKDQIKSLIVGLMLT-----STPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNN 152 (975)
Q Consensus 82 ~~~~~~~~i~~e----~K~~Ir~~ll~~l~~-----~~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d 152 (975)
++++ +|..||+.+++.+.+ .++.||++++.+++.|+.++||.+||++++++++.++++ +
T Consensus 74 --------l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~----~ 141 (980)
T 3ibv_A 74 --------WNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAAS----S 141 (980)
T ss_dssp --------CCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHH----C
T ss_pred --------CChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCC----C
Confidence 5677 999999999999986 346799999999999999999999999999999999877 5
Q ss_pred h-hHHhHHHHHHHHHHHhhhcc-c-cchh---hhhhHHHHHHHh-hHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHH
Q 002048 153 Y-VSINGILGTANSIFKKFRYQ-F-KTND---LLLDLKYCLDNF-AAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQ 225 (975)
Q Consensus 153 ~-~~~~~~L~~l~~i~k~~~~~-~-~~~~---~~~~l~~il~~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 225 (975)
. ......|++|..+.+++-.. . ++++ ...+++..+..- .+.+++.+..+....... .+....
T Consensus 142 ~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~----~~~~l~------- 210 (980)
T 3ibv_A 142 QSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNA----KNYGTV------- 210 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT----TCHHHH-------
T ss_pred hhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhcc----CCHHHH-------
Confidence 5 34566778888776665221 0 1211 112334333322 333344443333332221 122222
Q ss_pred HHHHHHhhhcc-cCCCchHHHHhHHHHHHHHHHHhcc-----------------cC------------------CcccC-
Q 002048 226 RLCCRIFYSLN-FQELPEFFEDHMREWMTEFKKYLTT-----------------NY------------------PALES- 268 (975)
Q Consensus 226 ~~~lk~~~~~~-~~~lp~~~~~~~~~~~~~~~~~l~~-----------------~~------------------~~l~~- 268 (975)
..+++++.+.. +.+....+. ..+++.+.+++.. .- ..+..
T Consensus 211 ~~~L~~l~s~i~wi~~~~i~~---~~ll~~l~~~L~~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~ 287 (980)
T 3ibv_A 211 GLCLQVYAQWVSWININLIVN---EPCMNLLYSFLQIEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQ 287 (980)
T ss_dssp HHHHHHHHHHTTTSCHHHHHC---HHHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHhhcCHHhhhc---chHHHHHHHHcCChHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcc
Confidence 23444444432 222211111 1222222222221 00 00000
Q ss_pred CCCcCchHHHHHHHHHHHHHHHHHHhHHH--------------HHhhHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHH
Q 002048 269 TSDGLGLVDGLRAAVCENISLYMKMNEEE--------------FQGYLNDFALAVWTLLGNVSQSSSRDSLAVTAIKFLT 334 (975)
Q Consensus 269 ~~~~~~~~~~~k~~~~~~l~~~~~~~~~~--------------f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~fl~ 334 (975)
.+| ....+.+++.++.+.+.+-.. ..+++..+++.++.... . .++++...+++||+
T Consensus 288 ~~D-----~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~----~-~~deVs~~t~~Fw~ 357 (980)
T 3ibv_A 288 STD-----PNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLS----D-DYDETSTAVFPFLS 357 (980)
T ss_dssp -CC-----HHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHT----C-SSHHHHHTTHHHHH
T ss_pred ccc-----HHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhC----C-CchhHHHHHHHHHH
Confidence 111 112233444443332221111 01223333333433322 1 35788889999999
Q ss_pred hh-chhh-------hhhcccCCCchhhHHHHhhcccCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHHH
Q 002048 335 NV-STSV-------HHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIAT 406 (975)
Q Consensus 335 ~~-~~~~-------~~~~~~~~~~l~~l~~~li~~~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~ 406 (975)
.. ...+ ++..+ ++++..++..+ +..|.+.+++ .|++|. ++.|.+++..-|.....+++.++.
T Consensus 358 ~~l~~~~~~~~~~~~~~~~--~~~l~~Ll~~l-i~k~~yp~d~--~~~~~~-----d~ed~~~F~e~Rk~l~~l~d~~~~ 427 (980)
T 3ibv_A 358 DLLVSLRKESSSKELSASL--KEFLKSLLEAI-IKKMKYDESQ--EWDDDP-----DSEEEAEFQEMRKKLKIFQDTINS 427 (980)
T ss_dssp HHHHHHHHHTTSCCCCHHH--HHHHHHHHHHH-HHTTSCCTTC--CCCCCS-----SSSTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccccHHH--HHHHHHHHHHH-HHHccCCCcc--cccccc-----chhHHHHHHHHHHHHHHHHHHHHh
Confidence 76 3211 22333 57788888754 4778887765 364310 001112234467666677777777
Q ss_pred HhhhhhHHHHHHHHHHHHHHhcc-CCCCCchhHHHHHHHHHHHHhhhcC-CCc--cc-cCcccHHHHHHHhcccccCCCC
Q 002048 407 HYRQHVMETVSVQIQNLLTSFAA-NPVANWKDKDCAIYLVVSLATKKAG-STS--IS-TDLVDVQSFFTSVIVPELQSPD 481 (975)
Q Consensus 407 ~~~~~~~~~l~~~i~~~l~~~~~-~~~~~w~~keaal~~ig~ia~~~~~-g~~--~~-~~~~~~~~~l~~~v~p~l~~~~ 481 (975)
..++.+.+.+.+++...+++.-. ..+.+|+.+||++++++++++.+.. |.. .. .....+.+++.+.+-..+..
T Consensus 428 l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~-- 505 (980)
T 3ibv_A 428 IDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCR-- 505 (980)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTT--
T ss_pred cChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCC--
Confidence 77888888555556555554321 1134699999999999999987743 111 00 11223555555444333222
Q ss_pred CCCcchhHhhHHHHHHHhhccC--CHhHHHhHHHHHHH--hhcCCCchHHHHHHHHHHHHHccccCCCccccccccccch
Q 002048 482 VNAFPMLKAGALKFFTMFRIQI--PKIHAFQFFPDLVR--FLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPY 557 (975)
Q Consensus 482 ~~~~~~Lr~ra~~~l~~f~~~~--~~~~~~~~~~~l~~--~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~ 557 (975)
++||.+|..+||++|+|++++ .++.+..+++.++. .+.+++..||..||.++.+|+..+ +..+.||
T Consensus 506 -~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~---------~~~L~~~ 575 (980)
T 3ibv_A 506 -HPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI---------KKQVVNY 575 (980)
T ss_dssp -CCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT---------TTTCSSS
T ss_pred -CCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHh---------hHHhhhH
Confidence 269999999999999999876 46889999999999 898899999999999999999875 4578999
Q ss_pred HHHHHHHHHHhcCC-CC--c-----------------h-hhHHHHHHHHHHHh-hc---cchhhhHHHHHHHHHHHHHHH
Q 002048 558 LSVLMTSLFNAFKF-PE--S-----------------E-ENQYIMKCIMRVLG-VA---EISNEVAAPCISGLTSILNEV 612 (975)
Q Consensus 558 l~~il~~L~~ll~~-~~--~-----------------~-~~~~l~~~l~~vi~-~~---~~i~p~~~~l~~~L~~~l~~~ 612 (975)
++++++.+-.++.. .+ + . ..-+++++++.++. .+ ++...|...+++.+..-+...
T Consensus 576 ~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~ 655 (980)
T 3ibv_A 576 TESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAA 655 (980)
T ss_dssp HHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988862 11 1 0 12378999999987 43 344456677777777666655
Q ss_pred HhCCCC---Cc-hhHHHHHHHHHHHHHhhhc--CcchHHHHHHhhHHHHHHHHhcc--cccchHHHHHHHHHHHHhcCCC
Q 002048 613 CKNPKS---PI-FNHYLFESVAVLVRRACQR--DPSLISAFEASILPSLQIILQND--VTEFLPYAFQLLAQLIELNRPP 684 (975)
Q Consensus 613 ~~~~~~---~~-~~~~~~e~l~~li~~~~~~--~~~~~~~l~~~l~P~i~~il~~~--~~~~~~~~l~ll~~ll~~~~~~ 684 (975)
.....+ +. -.|..+-+++++.+..... .+......-..+++.+..+++.- .....+.+...+..++..
T Consensus 656 l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~---- 731 (980)
T 3ibv_A 656 LSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINV---- 731 (980)
T ss_dssp HTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTT----
T ss_pred HhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH----
Confidence 533221 11 2345566777777765211 11113444556677777777642 234556677777776665
Q ss_pred CchhHHHHHHhhcCccccc-cCCCccchHHHHHHHHccCccc
Q 002048 685 LSSNYMQIFNLLLSPDSWK-RSSNVPALVRLLQAFLQKVPRE 725 (975)
Q Consensus 685 ~~~~~~~lf~~l~~~~l~~-~~~~l~~~~~~L~~~i~~~~~~ 725 (975)
+++.+..++|.++...+-. ...-+...+.++...+.+-..+
T Consensus 732 lg~~~~p~lp~~i~~ll~~~~~~e~~~fL~l~~qli~~f~~~ 773 (980)
T 3ibv_A 732 VGPDMLPKVPQLISILLNSIDMNELVDVLSFISQLIHIYKDN 773 (980)
T ss_dssp THHHHTTTHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHTTTT
T ss_pred ccHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444432211 1224555667777777765554
No 11
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=100.00 E-value=2.1e-31 Score=309.45 Aligned_cols=435 Identities=18% Similarity=0.243 Sum_probs=303.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHhc--CCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCCCCc
Q 002048 10 HLSQCFLHTLSPSPEPRRAAERSLAEMAD--RPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPTL 87 (975)
Q Consensus 10 ~l~~~L~~tls~d~~~r~~AE~~L~~~~~--~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~~~ 87 (975)
+|.++|.+++|||+++|++||++|+++++ .|+|+..|++++.+.+.+..+|++|+++|||.|+++|+...+... ..|
T Consensus 2 ~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~-~~~ 80 (462)
T 1ibr_B 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ-QRW 80 (462)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH-HHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHH-hhh
Confidence 47899999999999999999999999998 599999999999997778999999999999999999964322100 003
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCC-CCCCchHHHHHHHhcccccCCChhHHhHHHHHHHHH
Q 002048 88 APILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFP-KHWPTLLPELIANLKDAAQSNNYVSINGILGTANSI 166 (975)
Q Consensus 88 ~~i~~e~K~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P-~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i 166 (975)
..+++++|..||+.|++.+.+++..+ ++++.+|+.|+++|+| +.||++++.+++.++++. .|+..+++++.+|..+
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~--~~~~~r~~al~~l~~l 157 (462)
T 1ibr_B 81 LAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPN--STEHMKESTLEAIGYI 157 (462)
T ss_dssp HTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTT--CCHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCC--CCHHHHHHHHHHHHHH
Confidence 36999999999999999999888889 9999999999999999 599999999999997651 1456788999999999
Q ss_pred HHhhhccccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhcccCCCchHHHH
Q 002048 167 FKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFED 246 (975)
Q Consensus 167 ~k~~~~~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~~~lp~~~~~ 246 (975)
+++++.. . +....+.+++.+.... ... ..+...+..++ +++..+. +++.+
T Consensus 158 ~~~~~~~----~--------~~~~~~~ll~~l~~~l---~~~---~~~~~vr~~a~-------~~l~~~~-----~~~~~ 207 (462)
T 1ibr_B 158 CQDIDPE----Q--------LQDKSNEILTAIIQGM---RKE---EPSNNVKLAAT-------NALLNSL-----EFTKA 207 (462)
T ss_dssp HHHSCGG----G--------TGGGHHHHHHHHHHHH---STT---CCCHHHHHHHH-------HHHHHHT-----TTTHH
T ss_pred HHhCCch----h--------hHhHHHHHHHHHHHHh---CCC---CCCHHHHHHHH-------HHHHHHH-----HHHHH
Confidence 9987431 1 1122334444433322 121 11333333333 3333322 11222
Q ss_pred hHHHHH--HHHHHHhcccCCcccCCCCcCchHHHHHHHHHHHHHHHHHHhHHHHHhhHH-HHHHHHHHHHhccCCCCcch
Q 002048 247 HMREWM--TEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQGYLN-DFALAVWTLLGNVSQSSSRD 323 (975)
Q Consensus 247 ~~~~~~--~~~~~~l~~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~f~~~~~-~~~~~~~~~l~~~~~~~~~~ 323 (975)
++..|+ +.+...+... +.+.+ ..+|+++++++..+..++++.|.+|++ .+++.++..+.. ..+
T Consensus 208 ~~~~~~~~~~l~~~l~~~---~~~~~------~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~ 273 (462)
T 1ibr_B 208 NFDKESERHFIMQVVCEA---TQCPD------TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS-----DID 273 (462)
T ss_dssp HHTSHHHHHHHHHHHHHH---TTCSS------HHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHC-----SSH
T ss_pred hhhhhHHHHHHHHHHHHh---cCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----Cch
Confidence 222221 1222222211 11111 578999999999999999888888887 777776655432 357
Q ss_pred HHHHHHHHHHHhh-chhhhhhcccC-----------------CCchhhHHHHhhcccCCCChhhHHHHhhCHHHHHhhcC
Q 002048 324 SLAVTAIKFLTNV-STSVHHTLFAG-----------------EGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDM 385 (975)
Q Consensus 324 ~~~~~~l~fl~~~-~~~~~~~~~~~-----------------~~~l~~l~~~li~~~l~l~~~d~e~we~dp~efv~~~~ 385 (975)
.+...+++||..+ ........+.+ ++++..++..+ +..+. +.|.+
T Consensus 274 ~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l-~~~l~--~~d~d-------------- 336 (462)
T 1ibr_B 274 EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL-TQTLT--KQDEN-------------- 336 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHH-HHHTT--CCCSS--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHH-HHHHH--hcccc--------------
Confidence 8999999999988 43211111100 12234444322 23332 22211
Q ss_pred CCCcchhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccH
Q 002048 386 EGSDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDV 465 (975)
Q Consensus 386 d~~d~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~ 465 (975)
+.++.+++|.+|.++|..++..+++.+.+.+++++.+.++ +.+|+.|++|++++|.++.++ . .
T Consensus 337 ~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~------~~~~~~r~aal~~l~~l~~~~----~---~---- 399 (462)
T 1ibr_B 337 DDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIK------NPDWRYRDAAVMAFGCILEGP----E---P---- 399 (462)
T ss_dssp CCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTT------CSSHHHHHHHHHHHHHTSSSS----C---T----
T ss_pred cccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHhcCC----c---H----
Confidence 1235678999999999999999998888889888888775 468999999999999986422 1 0
Q ss_pred HHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCC
Q 002048 466 QSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGG 545 (975)
Q Consensus 466 ~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~ 545 (975)
.. +. ..+..+++.++.+|+|++..||..|+.||.+++....
T Consensus 400 -----~~----~~---------------------------~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~--- 440 (462)
T 1ibr_B 400 -----SQ----LK---------------------------PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP--- 440 (462)
T ss_dssp -----TT----TC---------------------------TTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG---
T ss_pred -----HH----HH---------------------------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcc---
Confidence 00 00 2346788999999999999999999999999988642
Q ss_pred cccccccc-ccchHHHHHHHHHHhcC
Q 002048 546 KSRYNSAD-ITPYLSVLMTSLFNAFK 570 (975)
Q Consensus 546 ~~~~~~~~-l~p~l~~il~~L~~ll~ 570 (975)
... -.+|+++++..|+..++
T Consensus 441 -----~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 441 -----EAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp -----GGCCSTTTHHHHHHHHHCC--
T ss_pred -----cccccHHHHHHHHHHHHHHhc
Confidence 112 25899999999987653
No 12
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.97 E-value=1.3e-27 Score=304.71 Aligned_cols=564 Identities=12% Similarity=0.128 Sum_probs=348.3
Q ss_pred CCCCh--hhHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHhcCCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccC
Q 002048 1 MEWNQ--ETLQHLSQCFLHTLSP--SPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWA 76 (975)
Q Consensus 1 m~~~~--~~~~~l~~~L~~tls~--d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~ 76 (975)
|++.+ .+.++|.++|.++++| |+++|++||++|++++++|+++..+..++.+.+.+..+|++|++.|||.|+++|.
T Consensus 1 ~~~~~~~~~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~ 80 (1204)
T 3a6p_A 1 MAMDQVNALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWN 80 (1204)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred CChhhHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcc
Confidence 66644 4678899999999998 7778999999999999999777767766665567899999999999999999997
Q ss_pred CCCCCCCCCCcCCCCHHHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhccccc
Q 002048 77 PASDRNSGPTLAPILDAEKDQIKSLIVGLMLTS-------TPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQ 149 (975)
Q Consensus 77 ~~~~~~~~~~~~~i~~e~K~~Ir~~ll~~l~~~-------~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~ 149 (975)
.+++++|..||+.+++.+.+. ++.||++++.+++.|+++|||++||++++++++.++++
T Consensus 81 ------------~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~~-- 146 (1204)
T 3a6p_A 81 ------------GMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQG-- 146 (1204)
T ss_dssp ------------GSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHTC--
T ss_pred ------------cCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcCC--
Confidence 699999999999999998863 57899999999999999999999999999999998654
Q ss_pred CCChhHHhHHHHHHHHHHHhhhc-cccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccc---cC-CCChHHHHHHHHH
Q 002048 150 SNNYVSINGILGTANSIFKKFRY-QFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTV---SS-GGPVATLKLLFES 224 (975)
Q Consensus 150 ~~d~~~~~~~L~~l~~i~k~~~~-~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~---~~-~~~~~~~~~~~~~ 224 (975)
.....++|.+|..++++... .......+.+++..+...+|.++.++.++........ .. .++.........+
T Consensus 147 ---~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l 223 (1204)
T 3a6p_A 147 ---ETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRV 223 (1204)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHH
Confidence 45678899999999887432 1112223345666666667777777766554321100 00 0011101122334
Q ss_pred HHHHHHHhhhcc-cCCCchHHHHhHHHHHHHHHH-----------------HhcccC-Cc--------cc----------
Q 002048 225 QRLCCRIFYSLN-FQELPEFFEDHMREWMTEFKK-----------------YLTTNY-PA--------LE---------- 267 (975)
Q Consensus 225 l~~~lk~~~~~~-~~~lp~~~~~~~~~~~~~~~~-----------------~l~~~~-~~--------l~---------- 267 (975)
...+++++.++. +.+. .++.+.-..+++.+.. ++...- |. +.
T Consensus 224 ~~~aL~~l~~~l~Wi~~-~~i~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~ 302 (1204)
T 3a6p_A 224 GVAALNTLAGYIDWVSM-SHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSA 302 (1204)
T ss_dssp HHHHHHHHHTTTTTSCH-HHHHTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCH-HHHHhccchHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHH
Confidence 555677766542 2111 1111110113333222 222110 00 00
Q ss_pred ----CCCCcCchHHHHHHHHHHHHHHHHHHhHHHH--------HhhHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHh
Q 002048 268 ----STSDGLGLVDGLRAAVCENISLYMKMNEEEF--------QGYLNDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTN 335 (975)
Q Consensus 268 ----~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~f--------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~fl~~ 335 (975)
+.++.......+.+.+++.++.+.+.+...+ .+.+..|++.++..... ..+.+...+++||..
T Consensus 303 ~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~-----~~~~vs~~~l~fW~~ 377 (1204)
T 3a6p_A 303 AQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTH-----PSQFLRSSTQMTWGA 377 (1204)
T ss_dssp HHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTS-----SCHHHHHHHHHHHHH
T ss_pred hhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhC-----ccHHhHHHHHHHHHH
Confidence 0000000011222233333333332221111 12233444444444321 245677888999997
Q ss_pred h-chhh--hhhcccCCCchhhHHHHhh--cccCCCChhhHHHHhhCHHHHHhhcCCC-----CcchhhhHHHHHHHHHHH
Q 002048 336 V-STSV--HHTLFAGEGVIPQICQNIV--IPNVRLRDEDEELFEMNYVEFIRRDMEG-----SDVDTRRRIACELLKGIA 405 (975)
Q Consensus 336 ~-~~~~--~~~~~~~~~~l~~l~~~li--~~~l~l~~~d~e~we~dp~efv~~~~d~-----~d~~s~R~~A~~ll~~L~ 405 (975)
. +... -+..+ .+++..+++.+. +..|.+.+++.. .-.+|..+|.|+ ..+..-|....++++.++
T Consensus 378 ll~~~~~~~~~~~--~~~l~~Ll~vl~~~l~k~~yp~~~~~----~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~ 451 (1204)
T 3a6p_A 378 LFRHEILSRDPLL--LAIIPKYLRASMTNLVKMGFPSKTDS----PSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLAC 451 (1204)
T ss_dssp HHSCTTTTTCHHH--HHHHHHHHHHHHHHHSCCCCSSCCSS----THHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccccccHHH--HHHHHHHHHHHHHHHHHhcCccccCC----cchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 3321 11223 457777776541 356677654421 002233223221 234678999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhccC-------------------CCCCchhHHHHHHHHHHHHhhhcCCCccccCccc--
Q 002048 406 THYRQHVMETVSVQIQNLLTSFAAN-------------------PVANWKDKDCAIYLVVSLATKKAGSTSISTDLVD-- 464 (975)
Q Consensus 406 ~~~~~~~~~~l~~~i~~~l~~~~~~-------------------~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~-- 464 (975)
..++....+.+.+++.+.+.+...+ .+..|...||...+++++...+.++.. ......
T Consensus 452 ~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e-~~~l~~~~ 530 (1204)
T 3a6p_A 452 RLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLN-REEIPVND 530 (1204)
T ss_dssp HHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSC-TTCCCHHH
T ss_pred hcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccc-cccccHHH
Confidence 9999988888888887666532110 123589999999999999876622211 001110
Q ss_pred HHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccC--CHhHHHhHHHHHHHhhcCC------------CchHHHHH
Q 002048 465 VQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQI--PKIHAFQFFPDLVRFLGAE------------SNVVHSYA 530 (975)
Q Consensus 465 ~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~--~~~~~~~~~~~l~~~L~~~------------~~~V~~~A 530 (975)
+...+ +.++ .+.. .+|.+|.+++.++|+|...+ .++.+..+++.++..+.+. ...||..|
T Consensus 531 ~~~Ll-~~ll-~~~~----~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a 604 (1204)
T 3a6p_A 531 GIELL-QMVL-NFDT----KDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHA 604 (1204)
T ss_dssp HHHHH-HHHH-HCCC----SCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHH
T ss_pred HHHHH-HHHH-hCCC----CChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHH
Confidence 12222 2211 1111 47899999999999887654 4688999999999888762 23689999
Q ss_pred HHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCC---chhhHHHHHHHHHHHh-hcc--chhhhHHHHHHH
Q 002048 531 ASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPE---SEENQYIMKCIMRVLG-VAE--ISNEVAAPCISG 604 (975)
Q Consensus 531 a~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~---~~~~~~l~~~l~~vi~-~~~--~i~p~~~~l~~~ 604 (975)
|.++.+++... ++.+.||+++|.+.+-.++.... ..+...+.+++..+.. ++. ....|...+++.
T Consensus 605 ~~al~~L~~~~---------~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P 675 (1204)
T 3a6p_A 605 CSSIIKMCRDY---------PQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAP 675 (1204)
T ss_dssp HHHHHHHHHHC---------HHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---------hHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 99999998764 56899999999999988876433 3344466677755543 322 223335555555
Q ss_pred HHHHH
Q 002048 605 LTSIL 609 (975)
Q Consensus 605 L~~~l 609 (975)
+.+.|
T Consensus 676 ~~~~w 680 (1204)
T 3a6p_A 676 VASIW 680 (1204)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 13
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.87 E-value=3.2e-19 Score=231.84 Aligned_cols=639 Identities=13% Similarity=0.115 Sum_probs=386.3
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCC----------ChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccC
Q 002048 7 TLQHLSQCFLHTLSPSPEPRRAAERSLAEMADRP----------NYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWA 76 (975)
Q Consensus 7 ~~~~l~~~L~~tls~d~~~r~~AE~~L~~~~~~p----------~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~ 76 (975)
+..++.++|....|||+++|++|+..|.+.-+.+ .....|++.+.+ .+..+|++|+..+.+.+..
T Consensus 4 ~~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d--~~~~vR~~A~~~L~~l~~~--- 78 (1230)
T 1u6g_C 4 ASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED--KNGEVQNLAVKCLGPLVSK--- 78 (1230)
T ss_dssp CCHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHHHTT---
T ss_pred hHhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHh---
Confidence 3568999999999999999999999999876544 235556666554 4789999999999987742
Q ss_pred CCCCCCCCCCcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCCC---------CCCchHHHHHHHhcc-
Q 002048 77 PASDRNSGPTLAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPK---------HWPTLLPELIANLKD- 146 (975)
Q Consensus 77 ~~~~~~~~~~~~~i~~e~K~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P~---------~Wp~Ll~~l~~~l~~- 146 (975)
++++.+..|+..++..+.+++..+|...+.+++.|+..-.|. .||+++|.+.+.+.+
T Consensus 79 -------------~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~ 145 (1230)
T 1u6g_C 79 -------------VKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ 145 (1230)
T ss_dssp -------------SCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC
T ss_pred -------------CCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCC
Confidence 456788899999999988888889999999999999987665 499999999999984
Q ss_pred cccCCChhHHhHHHHHHHHHHHhhhccccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHH
Q 002048 147 AAQSNNYVSINGILGTANSIFKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQR 226 (975)
Q Consensus 147 ~~~~~d~~~~~~~L~~l~~i~k~~~~~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 226 (975)
+ +.....+|+.++..+++.+...+. . .++.+.+.+++. +. ..+...+..+..++.
T Consensus 146 ~----~~~~~~~al~~l~~~~~~~~~~l~-----~----~~~~ll~~l~~~-------L~-----~~~~~vR~~a~~al~ 200 (1230)
T 1u6g_C 146 E----DVSVQLEALDIMADMLSRQGGLLV-----N----FHPSILTCLLPQ-------LT-----SPRLAVRKRTIIALG 200 (1230)
T ss_dssp S----CHHHHHHHHHHHHHHHHHTCSSCT-----T----THHHHHHHHGGG-------GG-----CSSHHHHHHHHHHHH
T ss_pred C----chHHHHHHHHHHHHHHHHhHhHHH-----H----HHHHHHHHHHHH-------Hc-----CCcHHHHHHHHHHHH
Confidence 6 788899999999999986532111 0 112222222221 11 122333333333322
Q ss_pred HHHHHhhhcccCCCchHHHHhHHHHHHHHHHHhcccCCcccCCCCcCchHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHH
Q 002048 227 LCCRIFYSLNFQELPEFFEDHMREWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQGYLNDFA 306 (975)
Q Consensus 227 ~~lk~~~~~~~~~lp~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~f~~~~~~~~ 306 (975)
.+... .++.+ +..+++.+...+.... + +..+..+++++..+....++.|.+|++.++
T Consensus 201 ---~l~~~-----~~~~~---~~~~l~~l~~~L~~~~-----~-------~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~ 257 (1230)
T 1u6g_C 201 ---HLVMS-----CGNIV---FVDLIEHLLSELSKND-----S-------MSTTRTYIQCIAAISRQAGHRIGEYLEKII 257 (1230)
T ss_dssp ---HHTTT-----C-------CTTHHHHHHHHHHHTC-----S-------SCSCTTHHHHHHHHHHHSSGGGTTSCTTHH
T ss_pred ---HHHHh-----cCHHH---HHHHHHHHHHHhccCC-----c-------hhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 22111 11111 2223444444443321 0 123335677777777766777888888888
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHHHhhchhhhhhcccCCCchhhHHHHhhcccCCCChhh----HHHHhhCHH----
Q 002048 307 LAVWTLLGNVSQSSSRDSLAVTAIKFLTNVSTSVHHTLFAGEGVIPQICQNIVIPNVRLRDED----EELFEMNYV---- 378 (975)
Q Consensus 307 ~~~~~~l~~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~~~~l~~l~~~li~~~l~l~~~d----~e~we~dp~---- 378 (975)
+.++..+.. ..+.....+..++.+|... +..-+ .+++..++..+ +..+..+++. .+.|.++.+
T Consensus 258 ~~ll~~l~d--~~~~vR~~a~~~l~~l~~~----~~~~~--~~~l~~li~~l-l~~l~~d~~~~~~~d~~~~~~~~~~~~ 328 (1230)
T 1u6g_C 258 PLVVKFCNV--DDDELREYCIQAFESFVRR----CPKEV--YPHVSTIINIC-LKYLTYDPNYNYDDEDEDENAMDADGG 328 (1230)
T ss_dssp HHHHHHHSS--CCTTTHHHHHHHHHHHHHC----TTCCC--HHHHHHHHHHH-TTCCCCC--------------------
T ss_pred HHHHHHhcC--CCHHHHHHHHHHHHHHHHH----ChHHH--HHhHHHHHHHH-HHHhCCCCCCCCccccccccccccccc
Confidence 888887642 1222233444445544443 11222 45677777643 4666543321 111211110
Q ss_pred --HHHh--hc--CCCCcchhhhHHHHHHHHHHHHHhhhhh-------HHHHH---------------HHHHHHHHHhc--
Q 002048 379 --EFIR--RD--MEGSDVDTRRRIACELLKGIATHYRQHV-------METVS---------------VQIQNLLTSFA-- 428 (975)
Q Consensus 379 --efv~--~~--~d~~d~~s~R~~A~~ll~~L~~~~~~~~-------~~~l~---------------~~i~~~l~~~~-- 428 (975)
+... ++ .+.+..+.+|.+|.+.+..++..+++.+ .+.+. ..+...+....
T Consensus 329 ~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 408 (1230)
T 1u6g_C 329 DDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPV 408 (1230)
T ss_dssp ----------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC
T ss_pred ccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccc
Confidence 0000 00 0112246789999999998886554311 11110 00001111000
Q ss_pred ---------------------------------cCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhccc
Q 002048 429 ---------------------------------ANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVP 475 (975)
Q Consensus 429 ---------------------------------~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p 475 (975)
.-.+++|+.|.+++.+++.+...+...+. + .++.+ ...++.
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~---~--~l~~l-l~~l~~ 482 (1230)
T 1u6g_C 409 QSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALT---Q--HIPVL-VPGIIF 482 (1230)
T ss_dssp ------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTG---G--GHHHH-HHHHHH
T ss_pred cccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhH---H--HHHHH-HHHHHH
Confidence 01145799999999999999876533221 1 12332 234455
Q ss_pred ccCCCCCCCcchhHhhHHHHHHHhhccCCHh----HHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCcccccc
Q 002048 476 ELQSPDVNAFPMLKAGALKFFTMFRIQIPKI----HAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNS 551 (975)
Q Consensus 476 ~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~----~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~ 551 (975)
.+.++. ..+-+|..++..++.+.....++ ++..+++.++.+++|++..|+..|..++..++....... .-..
T Consensus 483 ~L~d~~--~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~--~~~~ 558 (1230)
T 1u6g_C 483 SLNDKS--SSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLD--QPSS 558 (1230)
T ss_dssp HTTCSS--SCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSS--SCCC
T ss_pred HHcCCC--CcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcc--cccc
Confidence 566531 13478888888888876554443 788899999999999988888888888888775432100 0113
Q ss_pred ccccchHHHHHHHHHHhcCCC--CchhhHHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHH
Q 002048 552 ADITPYLSVLMTSLFNAFKFP--ESEENQYIMKCIMRVLG-VAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFES 628 (975)
Q Consensus 552 ~~l~p~l~~il~~L~~ll~~~--~~~~~~~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~ 628 (975)
..+.||++.++..++..+... +....+..++++..++. .++.+.++.+.+++.|...+ +++ ..+.....+
T Consensus 559 ~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l----~~e---~~r~~~~~a 631 (1230)
T 1u6g_C 559 FDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERL----KNE---ITRLTTVKA 631 (1230)
T ss_dssp CCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHT----TSS---SHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHh----ccc---hhHHHHHHH
Confidence 578999999999999988433 22234466788888888 88888888887777665543 222 223345566
Q ss_pred HHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhcccccchHHHHHHHHHHHHhcCCCCchh-HHHHHHhhcCcccccc--C
Q 002048 629 VAVLVRRACQRDPSLISAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRPPLSSN-YMQIFNLLLSPDSWKR--S 705 (975)
Q Consensus 629 l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~~~~~~~~~-~~~lf~~l~~~~l~~~--~ 705 (975)
++.++.+. .+.....+.+.++|.+...+..+.......++..+..++...+..++.. +..++..++. +.+. .
T Consensus 632 l~~i~~~~---~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~--ll~~~D~ 706 (1230)
T 1u6g_C 632 LTLIAGSP---LKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPP--LISESDM 706 (1230)
T ss_dssp HHHHTTCS---SCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGG--GSCTTCH
T ss_pred HHHHHhCc---cccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHh--hcCcchH
Confidence 66655442 1223467788899999988876666677889999999999877545433 3355544433 2222 2
Q ss_pred CCccchHHHHHHHHccCccchhccCchHHHHHHHHHhhc
Q 002048 706 SNVPALVRLLQAFLQKVPREIAQEGKLREVLGIFNMLVL 744 (975)
Q Consensus 706 ~~l~~~~~~L~~~i~~~~~~~~~~~~~~~il~i~~~ll~ 744 (975)
........+|...+...+..+.. +...++..+.+++.
T Consensus 707 ~~~~~~~~~L~~l~~~~~~~~~~--~~~~~l~~~~~~l~ 743 (1230)
T 1u6g_C 707 HVSQMAISFLTTLAKVYPSSLSK--ISGSILNELIGLVR 743 (1230)
T ss_dssp HHHHHHHHHHHHHTTSCGGGGGG--TTTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCchhHHH--hHHhHHHHHHHHHc
Confidence 24567788888888877766542 34444444444443
No 14
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.84 E-value=1.1e-16 Score=201.07 Aligned_cols=624 Identities=12% Similarity=0.103 Sum_probs=385.2
Q ss_pred cChHHHHHHHHHHHhhhhcccCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHhccc----
Q 002048 55 IDEQIRHAAAVNFKNHLRFRWAPASDRNSGPTLAPILDAEKDQIKSLIVGLMLTS--TPRIQSQLSEALVVVGNHD---- 128 (975)
Q Consensus 55 ~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~~~~~i~~e~K~~Ir~~ll~~l~~~--~~~ir~qla~~i~~Ia~~D---- 128 (975)
.+..+|+.|..+||+ |. ++.+..+...|++.+.+. +..+|...+.++......+
T Consensus 13 ~d~~~r~~A~~~L~~-----~~---------------~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~ 72 (876)
T 1qgr_A 13 PDRLELEAAQKFLER-----AA---------------VENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDI 72 (876)
T ss_dssp SCHHHHHHHHHHHHH-----HH---------------HHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHH
T ss_pred CCHHHHHHHHHHHHH-----HH---------------hcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHh
Confidence 477899999999987 32 224567888899998875 3679999999999877655
Q ss_pred ---CCCCCCchHHH--------HHHHhcccccCCChhHHhHHHHHHHHHHHhhhccccchhhhhhHHHHHHHhhHHHHHH
Q 002048 129 ---FPKHWPTLLPE--------LIANLKDAAQSNNYVSINGILGTANSIFKKFRYQFKTNDLLLDLKYCLDNFAAPLLEI 197 (975)
Q Consensus 129 ---~P~~Wp~Ll~~--------l~~~l~~~~~~~d~~~~~~~L~~l~~i~k~~~~~~~~~~~~~~l~~il~~~~~~l~~l 197 (975)
+++.|+.+.+. +++.+.++ +... +++..++..+++..-. .+.+ |.+++.
T Consensus 73 ~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~----~~~~-~~~~~~l~~i~~~~~~----~~~w-----------~~ll~~ 132 (876)
T 1qgr_A 73 KAQYQQRWLAIDANARREVKNYVLHTLGTE----TYRP-SSASQCVAGIACAEIP----VNQW-----------PELIPQ 132 (876)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHTTTC----CSSS-CHHHHHHHHHHHHHGG----GTCC-----------TTHHHH
T ss_pred HHHHHhhhccCCHHHHHHHHHHHHHHhCCC----cHHH-HHHHHHHHHHHHhhCc----cccc-----------HHHHHH
Confidence 34679887777 88888776 6666 8899999999875311 1111 223333
Q ss_pred HHHHHHHHhccccCCC-ChHHHHHHHHHHHHHHHHhhhcccCCCchHHHHhHHHHHHHHHHHhcccCCcccCCCCcCchH
Q 002048 198 FLKTAALIDSTVSSGG-PVATLKLLFESQRLCCRIFYSLNFQELPEFFEDHMREWMTEFKKYLTTNYPALESTSDGLGLV 276 (975)
Q Consensus 198 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~lk~~~~~~~~~lp~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 276 (975)
+..... + +. +...+..++.++..+++-+ -|+.+...+..+++.+...+..+.+ .
T Consensus 133 l~~~l~---~----~~~~~~~r~~al~~l~~l~~~~-------~~~~~~~~~~~ll~~l~~~l~~~~~-----------~ 187 (876)
T 1qgr_A 133 LVANVT---N----PNSTEHMKESTLEAIGYICQDI-------DPEQLQDKSNEILTAIIQGMRKEEP-----------S 187 (876)
T ss_dssp HHHHHH---C----TTCCHHHHHHHHHHHHHHHHHS-------CHHHHGGGHHHHHHHHHHHHSTTCS-----------C
T ss_pred HHHHHh---C----CCCCHHHHHHHHHHHHHHHHhc-------CHhhHHhHHHHHHHHHHHhhcCCCC-----------C
Confidence 322221 1 21 3333444444443333321 1444556677777777776653210 1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhh--HHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHhh-chhhhhhcccCCCchh-
Q 002048 277 DGLRAAVCENISLYMKMNEEEFQGY--LNDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNV-STSVHHTLFAGEGVIP- 352 (975)
Q Consensus 277 ~~~k~~~~~~l~~~~~~~~~~f~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~fl~~~-~~~~~~~~~~~~~~l~- 352 (975)
..+|..+++++..+....+..+... ...+++.+...+ . ...+++...+++.+..+ . .+.+.+ .+++.
T Consensus 188 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~----~-~~~~~vr~~a~~~l~~l~~--~~~~~~--~~~~~~ 258 (876)
T 1qgr_A 188 NNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT----Q-CPDTRVRVAALQNLVKIMS--LYYQYM--ETYMGP 258 (876)
T ss_dssp HHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHT----T-CSSHHHHHHHHHHHHHHHH--HSGGGC--HHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHc----C-CCCHHHHHHHHHHHHHHHH--HhHHHH--HHHHHH
Confidence 5788889999988776555443211 112333333332 1 12356777788888877 2 112223 34444
Q ss_pred hHHHHhhcccCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHhh-----------------------
Q 002048 353 QICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYR----------------------- 409 (975)
Q Consensus 353 ~l~~~li~~~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~~~~----------------------- 409 (975)
.++..++ ..+. ++...+|..|.+++..+++...
T Consensus 259 ~l~~~~~-~~~~-----------------------~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (876)
T 1qgr_A 259 ALFAITI-EAMK-----------------------SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFY 314 (876)
T ss_dssp THHHHHH-HHHT-----------------------CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCH
T ss_pred HHHHHHH-HHhc-----------------------CCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHH
Confidence 4444222 1111 1224466677777777765421
Q ss_pred -hhhHHHHHHHHHHHHHHhccCC-CCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcch
Q 002048 410 -QHVMETVSVQIQNLLTSFAANP-VANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPM 487 (975)
Q Consensus 410 -~~~~~~l~~~i~~~l~~~~~~~-~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~ 487 (975)
+...+.++..+.+.+.....+. .++|..|.+|..+++.++..+.+. +.+.+...+...+.+ .++.
T Consensus 315 ~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~---------~~~~~l~~l~~~l~~----~~~~ 381 (876)
T 1qgr_A 315 AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---------IVPHVLPFIKEHIKN----PDWR 381 (876)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---------GHHHHHHHHHHHTTC----SSHH
T ss_pred HHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh---------hHHHHHHHHHHHccC----CChH
Confidence 0011222222333332211111 347999999999999998766321 122333455555655 4789
Q ss_pred hHhhHHHHHHHhhccCCH----hHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHH
Q 002048 488 LKAGALKFFTMFRIQIPK----IHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMT 563 (975)
Q Consensus 488 Lr~ra~~~l~~f~~~~~~----~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~ 563 (975)
+|..|++.+|.+.....+ .++..+++.++.+|+|++..||..|+.++.+++..... .....|+++.++.
T Consensus 382 ~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-------~~~~~~~l~~~l~ 454 (876)
T 1qgr_A 382 YRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE-------AAINDVYLAPLLQ 454 (876)
T ss_dssp HHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGG-------GTSSTTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCch-------hcccHHHHHHHHH
Confidence 999999999999887653 35778899999999999999999999999999886320 1125689999999
Q ss_pred HHHHhcCCCCchhhHHHHHHHHHHHh-hc--------------cchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHH
Q 002048 564 SLFNAFKFPESEENQYIMKCIMRVLG-VA--------------EISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFES 628 (975)
Q Consensus 564 ~L~~ll~~~~~~~~~~l~~~l~~vi~-~~--------------~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~ 628 (975)
.|+..+.+. ....+....+++.++. ++ +.+.||...+++.|...+... ..++......++++
T Consensus 455 ~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~--~~~~~~~r~~~~~~ 531 (876)
T 1qgr_A 455 CLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRP--DGHQNNLRSSAYES 531 (876)
T ss_dssp HHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSC--SSCSTTHHHHHHHH
T ss_pred HHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCc--CcchhhHHHHHHHH
Confidence 999999774 2234456677877777 65 347899888888777655311 11234566789999
Q ss_pred HHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhcc---------c------ccchHHHHHHHHHHHHhcC-CCCchhHHHH
Q 002048 629 VAVLVRRACQRDPSLISAFEASILPSLQIILQND---------V------TEFLPYAFQLLAQLIELNR-PPLSSNYMQI 692 (975)
Q Consensus 629 l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~---------~------~~~~~~~l~ll~~ll~~~~-~~~~~~~~~l 692 (975)
++.+++.++. ....+.+.++|.+...+... . .+....++..+..++...+ ..+.|.+..+
T Consensus 532 l~~l~~~~~~----~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l 607 (876)
T 1qgr_A 532 LMEIVKNSAK----DCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVV 607 (876)
T ss_dssp HHHHHHTCCS----TTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHH
T ss_pred HHHHHHHCch----hhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHH
Confidence 9999998622 24456667777766655431 1 1223456777777776644 2234445566
Q ss_pred HHhhcCccccccC----CCccchHHHHHHHHccCccchhccCchHHHHHHHHHhhcCCCC---cchHHHHHHHHHHhcch
Q 002048 693 FNLLLSPDSWKRS----SNVPALVRLLQAFLQKVPREIAQEGKLREVLGIFNMLVLSPST---DEQGFYVLNTIVESLEY 765 (975)
Q Consensus 693 f~~l~~~~l~~~~----~~l~~~~~~L~~~i~~~~~~~~~~~~~~~il~i~~~ll~~~~~---~~~a~~ll~~ii~~~~~ 765 (975)
+|.++.. .+.. .....++.++.+++......|. +|+..++..+.+++.+... ...++.+++.++..++
T Consensus 608 ~~~l~~~--l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~- 682 (876)
T 1qgr_A 608 MASLLRM--FQSTAGSGGVQEDALMAVSTLVEVLGGEFL--KYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ- 682 (876)
T ss_dssp HHHHHHH--C-----CCHHHHHHHHHHHHHHHHHGGGGG--GGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG-
T ss_pred HHHHHHH--HHhccCCCCccHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH-
Confidence 6666552 2221 2345677788888776555554 4788888888877765422 2457889999999885
Q ss_pred hhHhhhHHHHHHHHHHHhhcCc-hhhHHHHHHHHHHHHHHHhCh
Q 002048 766 GVIAQFVPHIWGVLFTRLQNKR-TVKFVKSLLIFMSLFLVKHGP 808 (975)
Q Consensus 766 ~~~~~~l~~il~~~l~~L~~~~-~~~~~~~~i~~~~~~~~~~~~ 808 (975)
..+.++++.++..++..+...+ ........+..++.++...++
T Consensus 683 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~ 726 (876)
T 1qgr_A 683 SNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGG 726 (876)
T ss_dssp GGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGG
T ss_pred HhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhch
Confidence 6788999999999999998732 223334444445555433333
No 15
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.80 E-value=5.6e-15 Score=184.40 Aligned_cols=675 Identities=12% Similarity=0.082 Sum_probs=408.8
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC-----C-C----hHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCC
Q 002048 8 LQHLSQCFLHTLSPSPEPRRAAERSLAEMADR-----P-N----YGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAP 77 (975)
Q Consensus 8 ~~~l~~~L~~tls~d~~~r~~AE~~L~~~~~~-----p-~----f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~ 77 (975)
...+.+++....+.+..+|..|--.||+.-+. | + .-..|++.+.+ .+..+|..++..+....+..|..
T Consensus 47 ~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~~--~~~~vr~~~a~~i~~ia~~~~~~ 124 (852)
T 4fdd_A 47 NNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGD--SSPLIRATVGILITTIASKGELQ 124 (852)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTTC--SSHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhcCcc
Confidence 34567777765678899999999999865431 2 1 22333333333 36789999999999888876542
Q ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccC--------CCCCCchHHHHHHHhccccc
Q 002048 78 ASDRNSGPTLAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDF--------PKHWPTLLPELIANLKDAAQ 149 (975)
Q Consensus 78 ~~~~~~~~~~~~i~~e~K~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~--------P~~Wp~Ll~~l~~~l~~~~~ 149 (975)
. |+. +-..|++.+.+++..+|.....+++.|...-- ...++.+++.+.+.++++
T Consensus 125 ~--------wp~--------ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~-- 186 (852)
T 4fdd_A 125 N--------WPD--------LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHS-- 186 (852)
T ss_dssp T--------CTT--------HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCS--
T ss_pred c--------cHH--------HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCC--
Confidence 1 222 34556666666667788888888888875321 123677888888888877
Q ss_pred CCChhHHhHHHHHHHHHHHhhhccccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHH
Q 002048 150 SNNYVSINGILGTANSIFKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCC 229 (975)
Q Consensus 150 ~~d~~~~~~~L~~l~~i~k~~~~~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 229 (975)
++..+..|+.++..+++.. ++... ..++.+.+.++. . + + ..+...+..+.+++..+.
T Consensus 187 --~~~vR~~A~~aL~~~~~~~-----~~~~~----~~~~~~l~~l~~----~---~-~----d~~~~vr~~a~~~L~~l~ 243 (852)
T 4fdd_A 187 --SPKIRSHAVACVNQFIISR-----TQALM----LHIDSFIENLFA----L---A-G----DEEPEVRKNVCRALVMLL 243 (852)
T ss_dssp --SHHHHHHHHHHHHTTTTTT-----CHHHH----TSHHHHHHHHHH----H---H-T----CCCHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHhcc-----cHHHH----HHHHHHHHHHHH----H---c-C----CCCHHHHHHHHHHHHHHH
Confidence 8888888998888766421 22111 112222222222 1 1 1 234445555555554444
Q ss_pred HHhhhcccCCCchHHHHhHHHHHHHHHHHhcccCCcccCCCCcCchHHHHHHHHHHHHHHHHHH--hHHHHHhhHHHHHH
Q 002048 230 RIFYSLNFQELPEFFEDHMREWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKM--NEEEFQGYLNDFAL 307 (975)
Q Consensus 230 k~~~~~~~~~lp~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~~--~~~~f~~~~~~~~~ 307 (975)
+.+ |+.+..++...++.+...++. .+ ..++..+++.+..+.+. ..+.+.++++.++.
T Consensus 244 ~~~--------~~~~~~~l~~l~~~l~~~~~~-------~~------~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p 302 (852)
T 4fdd_A 244 EVR--------MDRLLPHMHNIVEYMLQRTQD-------QD------ENVALEACEFWLTLAEQPICKDVLVRHLPKLIP 302 (852)
T ss_dssp HHC--------HHHHGGGHHHHHHHHHHHHTC-------SS------HHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHH
T ss_pred HhC--------HHHHHHHHHHHHHHHHHHccC-------Cc------HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 432 445555666666666665442 11 46777888888776542 22345677777777
Q ss_pred HHHHHHhc---------cC--CCC---------cchHHHHHHHHHHHhh-chhhhhhcccCCCchhhHHHHhhcccCCCC
Q 002048 308 AVWTLLGN---------VS--QSS---------SRDSLAVTAIKFLTNV-STSVHHTLFAGEGVIPQICQNIVIPNVRLR 366 (975)
Q Consensus 308 ~~~~~l~~---------~~--~~~---------~~~~~~~~~l~fl~~~-~~~~~~~~~~~~~~l~~l~~~li~~~l~l~ 366 (975)
.+.+.+.. .. ... ...+....++..+... . +..+..++..+. ..+
T Consensus 303 ~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~----------~~~~~~l~~~l~-~~l--- 368 (852)
T 4fdd_A 303 VLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR----------DELLPHILPLLK-ELL--- 368 (852)
T ss_dssp HHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG----------GGGHHHHHHHHH-HHH---
T ss_pred HHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc----------HHHHHHHHHHHH-HHh---
Confidence 77665521 00 000 0012233333333332 1 111122222111 111
Q ss_pred hhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHHhccCCCCCchhHHHHHH
Q 002048 367 DEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQHV---METVSVQIQNLLTSFAANPVANWKDKDCAIY 443 (975)
Q Consensus 367 ~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~~~~~~~---~~~l~~~i~~~l~~~~~~~~~~w~~keaal~ 443 (975)
. +..+..|.+|...+..+++..++.+ .+.++..+...++ ++++..|.++..
T Consensus 369 -------------------~-~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~------d~~~~Vr~~a~~ 422 (852)
T 4fdd_A 369 -------------------F-HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLS------DKKALVRSITCW 422 (852)
T ss_dssp -------------------T-CSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTT------CSSHHHHHHHHH
T ss_pred -------------------c-CCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcC------CCCHHHHHHHHH
Confidence 0 1246688999999999987654432 3344444444442 457899999999
Q ss_pred HHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCC---HhHHHhHHHHHHHhhc
Q 002048 444 LVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIP---KIHAFQFFPDLVRFLG 520 (975)
Q Consensus 444 ~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~---~~~~~~~~~~l~~~L~ 520 (975)
++|.++..+..... ...+... ...++..+.+ .++-+|..|+|.++.+.+... ..++..+++.++.+++
T Consensus 423 ~l~~l~~~~~~~~~----~~~~~~l-l~~L~~~L~d----~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~ 493 (852)
T 4fdd_A 423 TLSRYAHWVVSQPP----DTYLKPL-MTELLKRILD----SNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFS 493 (852)
T ss_dssp HHHHTHHHHHHSCT----TTTHHHH-HHHHHHHHTC----SSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchH----HHHHHHH-HHHHHHHHhC----CCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHH
Confidence 99999876521110 0112222 2333444554 478999999999999875432 2468888999999988
Q ss_pred CCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHh---cCCCCchhhHHHHHHHHHHHh-hccchhh
Q 002048 521 AESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNA---FKFPESEENQYIMKCIMRVLG-VAEISNE 596 (975)
Q Consensus 521 ~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~l---l~~~~~~~~~~l~~~l~~vi~-~~~~i~p 596 (975)
+.+......+..|+..+...... .+ .-.+|++.++..+++. +.+.+. +...+++++..++. ++..+.|
T Consensus 494 ~~~~~~~~~~~~ai~~l~~~~~~----~~---~~~~~~~~l~p~l~~~~~~l~d~~~-~~~~~~~~l~~i~~~~g~~~~~ 565 (852)
T 4fdd_A 494 KYQHKNLLILYDAIGTLADSVGH----HL---NKPEYIQMLMPPLIQKWNMLKDEDK-DLFPLLECLSSVATALQSGFLP 565 (852)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHGG----GG---CCHHHHHHHHHHHHHHHHHSCTTCT-THHHHHHHHHHHHHHHGGGGHH
T ss_pred HhChHHHHHHHHHHHHHHHHhhh----hh---ccHHHHHHHHHHHHHHHHhcccccH-HHHHHHHHHHHHHHHHhHhHHH
Confidence 76544444566667766654221 01 1134677777776643 333322 33467899999999 9999999
Q ss_pred hHHHHHHHHHHHHHHHH-------hCC-----CCCchhHHHHHHHHHHHHHhhhcCcchHHHHH--HhhHHHHHHHHhcc
Q 002048 597 VAAPCISGLTSILNEVC-------KNP-----KSPIFNHYLFESVAVLVRRACQRDPSLISAFE--ASILPSLQIILQND 662 (975)
Q Consensus 597 ~~~~l~~~L~~~l~~~~-------~~~-----~~~~~~~~~~e~l~~li~~~~~~~~~~~~~l~--~~l~P~i~~il~~~ 662 (975)
|.+.++..+...+.... .+| .+..+....+++++.+++.++ +....+. +.++|.+...++.+
T Consensus 566 ~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~----~~~~~~~~~~~~~~~l~~~l~~~ 641 (852)
T 4fdd_A 566 YCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLG----GNIEQLVARSNILTLMYQCMQDK 641 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHG----GGGHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHh----HhHHHHhcCCcHHHHHHHHhCCC
Confidence 99998887776654431 223 234566778899999999872 2234443 57899999988776
Q ss_pred cccchHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCccccccCCCccchHHHHHHHHccCccchhccCchHHHHHHHHHh
Q 002048 663 VTEFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKRSSNVPALVRLLQAFLQKVPREIAQEGKLREVLGIFNML 742 (975)
Q Consensus 663 ~~~~~~~~l~ll~~ll~~~~~~~~~~~~~lf~~l~~~~l~~~~~~l~~~~~~L~~~i~~~~~~~~~~~~~~~il~i~~~l 742 (975)
..+....++.+++.+....+..+.+.+..++|.+.....-+.......+...+..+.....+.+. +|...++..+.++
T Consensus 642 ~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~--p~~~~il~~L~~~ 719 (852)
T 4fdd_A 642 MPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQ--PYIPMVLHQLVEI 719 (852)
T ss_dssp SHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGG--GGTHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHH--HHHHHHHHHHHHH
Confidence 66778899999999998776557777777777777632111112234555666666555554443 5888889888888
Q ss_pred hcCCCCc----chHHHHHHHHHHhcchhhHhhhHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHhChHHH
Q 002048 743 VLSPSTD----EQGFYVLNTIVESLEYGVIAQFVPHIWGVLFTRLQNKRTVKFVKSLLIFMSLFLVKHGPENL 811 (975)
Q Consensus 743 l~~~~~~----~~a~~ll~~ii~~~~~~~~~~~l~~il~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 811 (975)
+.+.... ..++..++.+....| +.+.|+++.++...+..|...+...-.......++.+ +..||+..
T Consensus 720 l~~~~~~~~~~~~a~~~igrl~~~~~-~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~l-i~~~p~~~ 790 (852)
T 4fdd_A 720 INRPNTPKTLLENTAITIGRLGYVCP-QEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTM-ISVNPSGV 790 (852)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHHHHCH-HHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHH-HHHCGGGT
T ss_pred hCCCCCCchHHHHHHHHHHHHHHhCH-HHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHH-HHhChHhH
Confidence 8654332 346677888888865 6788999999999999997543322223333334444 33577743
No 16
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.76 E-value=1.1e-13 Score=173.32 Aligned_cols=672 Identities=12% Similarity=0.085 Sum_probs=414.9
Q ss_pred hhHHHHHHHH-HHhcCCChHHHHHHHHHHHHHhcC--C-----ChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCC
Q 002048 6 ETLQHLSQCF-LHTLSPSPEPRRAAERSLAEMADR--P-----NYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAP 77 (975)
Q Consensus 6 ~~~~~l~~~L-~~tls~d~~~r~~AE~~L~~~~~~--p-----~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~ 77 (975)
...+.+.+.| ....++++.+|+++-+.|..+-.. | ++...|.+.+.+. .+..+|..|...++...+. |..
T Consensus 91 ~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~-~~~~~r~~al~~l~~l~~~-~~~ 168 (861)
T 2bpt_A 91 EAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAE-QPENVKRASLLALGYMCES-ADP 168 (861)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTT-SCHHHHHHHHHHHHHHHHT-SST
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHc-CCh
Confidence 3445555444 444567888999999888876442 3 3455555555442 2678999998888777764 542
Q ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHhcc---cCC--CCCCchHHHHHHHhcccccC
Q 002048 78 ASDRNSGPTLAPILDAEKDQIKSLIVGLMLTS--TPRIQSQLSEALVVVGNH---DFP--KHWPTLLPELIANLKDAAQS 150 (975)
Q Consensus 78 ~~~~~~~~~~~~i~~e~K~~Ir~~ll~~l~~~--~~~ir~qla~~i~~Ia~~---D~P--~~Wp~Ll~~l~~~l~~~~~~ 150 (975)
.. .+-......|-..+++.+.++ +..+|.....++..++.. .+. ..|+.+++.+.+.++++
T Consensus 169 ~~---------~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~--- 236 (861)
T 2bpt_A 169 QS---------QALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAE--- 236 (861)
T ss_dssp TS---------STTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCS---
T ss_pred hh---------hHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCC---
Confidence 10 011234556777777777766 578999999998886532 222 13677999999888877
Q ss_pred CChhHHhHHHHHHHHHHHhhhccccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHH
Q 002048 151 NNYVSINGILGTANSIFKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCR 230 (975)
Q Consensus 151 ~d~~~~~~~L~~l~~i~k~~~~~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk 230 (975)
+......++.+|..+++.+... . ...+. +.+++++. ..+ . ..+......+++.+..+++
T Consensus 237 -~~~~r~~a~~~l~~l~~~~~~~-----~----~~~l~---~~l~~~~~---~~~-~----~~~~~vr~~a~~~l~~l~~ 295 (861)
T 2bpt_A 237 -DIEVQAAAFGCLCKIMSKYYTF-----M----KPYME---QALYALTI---ATM-K----SPNDKVASMTVEFWSTICE 295 (861)
T ss_dssp -CHHHHHHHHHHHHHHHHHHGGG-----C----HHHHH---HTHHHHHH---HHT-T----CSSHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHHH-----H----HHHHH---HHHHHHHH---HHH-c----CCcHHHHHHHHHHHHHHHH
Confidence 8888889999999999876321 1 11111 02222221 112 1 2234445555565555544
Q ss_pred Hhhhccc---------CCCchHHHHhHHHHHHHHHHHhcccCCcccCCCCcCchHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 002048 231 IFYSLNF---------QELPEFFEDHMREWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQGY 301 (975)
Q Consensus 231 ~~~~~~~---------~~lp~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~f~~~ 301 (975)
....... ...|.+....+...++.+...+..... +++|.. |.+++.+.+++..+...+++ ..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~---d~~d~~---~~~r~~a~~~L~~l~~~~~~---~~ 366 (861)
T 2bpt_A 296 EEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNE---DPEDDD---WNVSMSAGACLQLFAQNCGN---HI 366 (861)
T ss_dssp HHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCC---C-CCCC---CHHHHHHHHHHHHHHHHHGG---GG
T ss_pred HHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhccc---cccccc---CcHHHHHHHHHHHHHHHccH---hH
Confidence 3211100 001223444555666666665553211 111111 46788888888888876653 23
Q ss_pred HHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHhh-chhhhhhcccCCCchhhHHHHhhcccCCCChhhHHHHhhCHHHH
Q 002048 302 LNDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNV-STSVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEF 380 (975)
Q Consensus 302 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~fl~~~-~~~~~~~~~~~~~~l~~l~~~li~~~l~l~~~d~e~we~dp~ef 380 (975)
++.+++.+.+.+.. ...+....++..+..+ +.... ..+ .+++..++..++ +.+. ||
T Consensus 367 ~~~l~~~l~~~l~~-----~~~~~r~~a~~~l~~i~~~~~~-~~~--~~~l~~il~~l~-~~l~-----------d~--- 423 (861)
T 2bpt_A 367 LEPVLEFVEQNITA-----DNWRNREAAVMAFGSIMDGPDK-VQR--TYYVHQALPSIL-NLMN-----------DQ--- 423 (861)
T ss_dssp HHHHHHHHHHHTTC-----SSHHHHHHHHHHHHHTSSSSCH-HHH--HHHHHHHHHHHH-HGGG-----------CS---
T ss_pred HHHHHHHHHHHcCC-----CChhHHHHHHHHHHHHHcCCCH-HHH--HHHHHHHHHHHH-HHcC-----------CC---
Confidence 44455555444432 1234556666667766 22110 112 345555555433 3321 11
Q ss_pred HhhcCCCCcchhhhHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCC
Q 002048 381 IRRDMEGSDVDTRRRIACELLKGIATHYRQ-----HVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGS 455 (975)
Q Consensus 381 v~~~~d~~d~~s~R~~A~~ll~~L~~~~~~-----~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g 455 (975)
...+|.+|...+..++...+. ...+.++..+...+. ++++.+.+|..+++.++..+.+.
T Consensus 424 ---------~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~-------~~~~v~~~a~~al~~l~~~~~~~ 487 (861)
T 2bpt_A 424 ---------SLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQ-------DHPKVATNCSWTIINLVEQLAEA 487 (861)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHT-------SCHHHHHHHHHHHHHHHHHHSSS
T ss_pred ---------cHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhc-------cChHHHHHHHHHHHHHHHhcccc
Confidence 244677788888888877542 345666666655553 23788999999999888765310
Q ss_pred -CccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCH---hHHHhHHHHHHHhhcCC---------
Q 002048 456 -TSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPK---IHAFQFFPDLVRFLGAE--------- 522 (975)
Q Consensus 456 -~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~---~~~~~~~~~l~~~L~~~--------- 522 (975)
.....+ -+.. +...+++.+.+.+ ..+-+|..+++.++.+....++ ..+..+++.+++.|.+.
T Consensus 488 ~~~~l~~--~~~~-il~~L~~~l~~~d--~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~ 562 (861)
T 2bpt_A 488 TPSPIYN--FYPA-LVDGLIGAANRID--NEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLT 562 (861)
T ss_dssp SSCGGGG--GHHH-HHHHHHHHHTCSC--CGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCC
T ss_pred cchhhHH--HHHH-HHHHHHHHHhCcC--cchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 000111 1222 2334455555432 3467899999999998765543 45667777777776531
Q ss_pred ------CchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCc-hhhHHHHHHHHHHHh-hccch
Q 002048 523 ------SNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPES-EENQYIMKCIMRVLG-VAEIS 594 (975)
Q Consensus 523 ------~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~-~~~~~l~~~l~~vi~-~~~~i 594 (975)
...+|..++.+|..++... ...+.||++.++..++.+++.... ...+..+.++..++. .++++
T Consensus 563 ~~~~~~~~~~~~~~~~~l~~l~~~~---------~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~ 633 (861)
T 2bpt_A 563 LEDAQSLQELQSNILTVLAAVIRKS---------PSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGF 633 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---------GGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh---------hhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhH
Confidence 3457888999999988753 236889999999999999976643 345566778888888 89999
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhccc--ccchHHHHH
Q 002048 595 NEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDV--TEFLPYAFQ 672 (975)
Q Consensus 595 ~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~~--~~~~~~~l~ 672 (975)
.||.+.++..|...+. ..++......+.+++.+++.+ + +....+.+.++|.+...+..+. .+..+.++.
T Consensus 634 ~~~l~~i~~~l~~~l~-----~~~~~vr~~a~~~l~~l~~~~-~---~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~ 704 (861)
T 2bpt_A 634 EKYLETFSPYLLKALN-----QVDSPVSITAVGFIADISNSL-E---EDFRRYSDAMMNVLAQMISNPNARRELKPAVLS 704 (861)
T ss_dssp HHHHHHHHHHHHHHHH-----CTTSHHHHHHHHHHHHHHHHT-G---GGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHHHHh-c---hhccchHHHHHHHHHHHhCCccccHhhhHHHHH
Confidence 9999888887776552 244556667888899888886 2 3566777888888888887543 467788999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHhhcCcccccc----C-------CCccchHHHHHHHHccCc---cchhccCchHHHHHH
Q 002048 673 LLAQLIELNRPPLSSNYMQIFNLLLSPDSWKR----S-------SNVPALVRLLQAFLQKVP---REIAQEGKLREVLGI 738 (975)
Q Consensus 673 ll~~ll~~~~~~~~~~~~~lf~~l~~~~l~~~----~-------~~l~~~~~~L~~~i~~~~---~~~~~~~~~~~il~i 738 (975)
.++.+....+..+.+.+-.++|.++...-... . ..-..+++.+...+.... +.+. +++..++..
T Consensus 705 ~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~--~~~~~i~~~ 782 (861)
T 2bpt_A 705 VFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALF--PYVGTIFQF 782 (861)
T ss_dssp HHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHG--GGHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH--HHHHHHHHH
Confidence 99988887654466666677777665221110 0 011344555555554322 2232 488899988
Q ss_pred HHHhhcCC----C--CcchHHHHHHHHHHhcchhhHhhhHH-HHHHHHHHHhhc
Q 002048 739 FNMLVLSP----S--TDEQGFYVLNTIVESLEYGVIAQFVP-HIWGVLFTRLQN 785 (975)
Q Consensus 739 ~~~ll~~~----~--~~~~a~~ll~~ii~~~~~~~~~~~l~-~il~~~l~~L~~ 785 (975)
+.+++.+. . ....|+.+++.++..+|++.+.+|++ .++..+++++..
T Consensus 783 l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~ 836 (861)
T 2bpt_A 783 IAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRS 836 (861)
T ss_dssp HHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHH
T ss_pred HHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhh
Confidence 88887542 1 13568899999999985467889998 899999998884
No 17
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.65 E-value=6.5e-13 Score=172.52 Aligned_cols=543 Identities=12% Similarity=0.081 Sum_probs=315.3
Q ss_pred HHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002048 43 GLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPTLAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALV 122 (975)
Q Consensus 43 ~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~~~~~i~~e~K~~Ir~~ll~~l~~~~~~ir~qla~~i~ 122 (975)
...|++-+.+ .|..+|..|.--|+|.+++... .++++.-..+-..+++.+.+.+..+|...+.+++
T Consensus 8 l~~lL~~l~s--~d~~~R~~A~~~L~~~l~~~~~------------~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~ 73 (1230)
T 1u6g_C 8 ISNLLEKMTS--SDKDFRFMATNDLMTELQKDSI------------KLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLG 73 (1230)
T ss_dssp HHHHHHHTTC--SSHHHHHHHHHHHHHHTSSSCC------------SCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhcCC--CCHhHHHHHHHHHHHHHccccc------------CCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3344444333 4789999999999887765422 2444555567777888888777899999999999
Q ss_pred HHhcccCCCCCCchHHHHHHHhcccccCCChhHHhHHHHHHHHHHHhhhccccchhhhhhHHHHHHHhhHHHHHHHHHHH
Q 002048 123 VVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSIFKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTA 202 (975)
Q Consensus 123 ~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i~k~~~~~~~~~~~~~~l~~il~~~~~~l~~l~~~~~ 202 (975)
.++..--+..|+.+++.+...+.++ +...++++..++..++..+........ ......+.+.|.++. .
T Consensus 74 ~l~~~~~~~~~~~i~~~Ll~~l~d~----~~~vR~~a~~~L~~i~~~l~~~~~~~~---~~~~~~~~llp~L~~----~- 141 (1230)
T 1u6g_C 74 PLVSKVKEYQVETIVDTLCTNMLSD----KEQLRDISSIGLKTVIGELPPASSGSA---LAANVCKKITGRLTS----A- 141 (1230)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHTTCS----SSHHHHHHHHHHHHHHHHCC-----CC---THHHHHHHHHHHHHH----H-
T ss_pred HHHHhCCHHHHHHHHHHHHHHhcCC----cHHHHHHHHHHHHHHHHhCCCcccccc---hHHHHHHHHHHHHHH----H-
Confidence 9998654467899999999999877 777788899999999886532100000 011122333333332 2
Q ss_pred HHHhccccCCCChHHHHHHHHHHHHHHHHhhhcccCCCchHHHHhHHHHHHHHHHHhcccCCcccCCCCcCchHHHHHHH
Q 002048 203 ALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFEDHMREWMTEFKKYLTTNYPALESTSDGLGLVDGLRAA 282 (975)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~~~lp~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~k~~ 282 (975)
+.+. .+......+++++.-+++.+.. .+...++.+++.+...+..+ + ..+|+.
T Consensus 142 --l~~~----~~~~~~~~al~~l~~~~~~~~~--------~l~~~~~~ll~~l~~~L~~~-------~------~~vR~~ 194 (1230)
T 1u6g_C 142 --IAKQ----EDVSVQLEALDIMADMLSRQGG--------LLVNFHPSILTCLLPQLTSP-------R------LAVRKR 194 (1230)
T ss_dssp --HSCC----SCHHHHHHHHHHHHHHHHHTCS--------SCTTTHHHHHHHHGGGGGCS-------S------HHHHHH
T ss_pred --HcCC----CchHHHHHHHHHHHHHHHHhHh--------HHHHHHHHHHHHHHHHHcCC-------c------HHHHHH
Confidence 2111 2233334444444444433222 11123445555555554421 1 368889
Q ss_pred HHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHhh-chhhhhhcccCCCchhhHHHHhhcc
Q 002048 283 VCENISLYMKMNEEEFQGYLNDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNV-STSVHHTLFAGEGVIPQICQNIVIP 361 (975)
Q Consensus 283 ~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~fl~~~-~~~~~~~~~~~~~~l~~l~~~li~~ 361 (975)
+++.+..+....++.+ ++.+++.+++.+..... . .....+++.+..+ .. . ...| .+++..++..++ .
T Consensus 195 a~~al~~l~~~~~~~~---~~~~l~~l~~~L~~~~~-~---~~r~~a~~~l~~l~~~-~-~~~~--~~~l~~l~~~ll-~ 262 (1230)
T 1u6g_C 195 TIIALGHLVMSCGNIV---FVDLIEHLLSELSKNDS-M---STTRTYIQCIAAISRQ-A-GHRI--GEYLEKIIPLVV-K 262 (1230)
T ss_dssp HHHHHHHHTTTC-------CTTHHHHHHHHHHHTCS-S---CSCTTHHHHHHHHHHH-S-SGGG--TTSCTTHHHHHH-H
T ss_pred HHHHHHHHHHhcCHHH---HHHHHHHHHHHhccCCc-h---hHHHHHHHHHHHHHHH-h-HHHH--HHHHHHHHHHHH-H
Confidence 9999998887666544 22344455555443211 1 1222234444443 11 0 1123 566667666443 2
Q ss_pred cCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhc-------------
Q 002048 362 NVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFA------------- 428 (975)
Q Consensus 362 ~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~------------- 428 (975)
.+. | +...+|.+|...+..+++..++.+.+.+-..+...+....
T Consensus 263 ~l~-----------d------------~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~ 319 (1230)
T 1u6g_C 263 FCN-----------V------------DDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDED 319 (1230)
T ss_dssp HHS-----------S------------CCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-----------
T ss_pred Hhc-----------C------------CCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 222 0 1234788889999999988776543322222222111100
Q ss_pred ---------------------cCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcch
Q 002048 429 ---------------------ANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPM 487 (975)
Q Consensus 429 ---------------------~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~ 487 (975)
......|+.|.+|..+++.++... | ..+.+++. .++|.+...-.+.++-
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~--~-------~~~~~~~~-~l~~~l~~~l~d~~~~ 389 (1230)
T 1u6g_C 320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTR--H-------EMLPEFYK-TVSPALISRFKEREEN 389 (1230)
T ss_dssp -------------------------CTTHHHHHHHHHHHHHHTTC--C-------TTHHHHHT-TTHHHHHSTTSCSSSH
T ss_pred cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhc--h-------hHHHHHHH-HHHHHHHHHcCCCchH
Confidence 001124899999999999887532 1 11344443 2233332111124788
Q ss_pred hHhhHHHHHHHhhccCC----------------------HhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCC
Q 002048 488 LKAGALKFFTMFRIQIP----------------------KIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGG 545 (975)
Q Consensus 488 Lr~ra~~~l~~f~~~~~----------------------~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~ 545 (975)
+|..++..++.+..... ...+..+++.+...|++++..||..++.++..++...
T Consensus 390 Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~---- 465 (1230)
T 1u6g_C 390 VKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVL---- 465 (1230)
T ss_dssp HHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc----
Confidence 99888887776543210 2456677788888899999999999999999988752
Q ss_pred ccccccccccchHHHHHHHHHHhcCCCCc--hhhHHHHHHHHHHHh-hcc-chhhhHHHHHHHHHHHHHHHHhCCCCCch
Q 002048 546 KSRYNSADITPYLSVLMTSLFNAFKFPES--EENQYIMKCIMRVLG-VAE-ISNEVAAPCISGLTSILNEVCKNPKSPIF 621 (975)
Q Consensus 546 ~~~~~~~~l~p~l~~il~~L~~ll~~~~~--~~~~~l~~~l~~vi~-~~~-~i~p~~~~l~~~L~~~l~~~~~~~~~~~~ 621 (975)
+..+.||++.++..++..+.+... ......+.++..++. .+. .+.||...++..|...+ ++ .++..
T Consensus 466 -----~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l----~d-~~~~v 535 (1230)
T 1u6g_C 466 -----PGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACV----GD-PFYKI 535 (1230)
T ss_dssp -----TTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHH----TC-SSHHH
T ss_pred -----hhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHH----cc-cchHH
Confidence 345779999999999999987542 122233445555555 443 37778776666665433 22 23333
Q ss_pred hHHHHHHHHHHHHHhhh---cCcchHHHHHHhhHHHHHHHHhc--ccccchHHHHHHHHHHHHhcCCCCchhHHHHHHhh
Q 002048 622 NHYLFESVAVLVRRACQ---RDPSLISAFEASILPSLQIILQN--DVTEFLPYAFQLLAQLIELNRPPLSSNYMQIFNLL 696 (975)
Q Consensus 622 ~~~~~e~l~~li~~~~~---~~~~~~~~l~~~l~P~i~~il~~--~~~~~~~~~l~ll~~ll~~~~~~~~~~~~~lf~~l 696 (975)
....+.+++.+++.++. ..+..+..+.+.++|.+...+.. ...++-..++..++.++......+.+.+..+++.+
T Consensus 536 ~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L 615 (1230)
T 1u6g_C 536 TSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIF 615 (1230)
T ss_dssp HHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHH
Confidence 34567788888887622 11335667788889988888842 22345566777888777775543554444544444
Q ss_pred c
Q 002048 697 L 697 (975)
Q Consensus 697 ~ 697 (975)
.
T Consensus 616 ~ 616 (1230)
T 1u6g_C 616 L 616 (1230)
T ss_dssp H
T ss_pred H
Confidence 3
No 18
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.44 E-value=2.3e-10 Score=136.30 Aligned_cols=422 Identities=11% Similarity=0.111 Sum_probs=245.3
Q ss_pred CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCCC-CCCchHHHHHHHhcccccCCChhHHhHHHHHHHHHHH
Q 002048 90 ILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPK-HWPTLLPELIANLKDAAQSNNYVSINGILGTANSIFK 168 (975)
Q Consensus 90 i~~e~K~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P~-~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i~k 168 (975)
.++..+..+...+...+.+++..+|...+.+++.+++.--++ .+++++|.+...++++ +......++.+|..+.+
T Consensus 157 ~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~----~~~vr~~a~~~l~~l~~ 232 (588)
T 1b3u_A 157 VSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDE----QDSVRLLAVEACVNIAQ 232 (588)
T ss_dssp SCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCS----CHHHHTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCC----cHHHHHHHHHHHHHHHH
Confidence 445667777777777766677889999999999999764332 3588999999999877 78888899999999987
Q ss_pred hhhccccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhcccCCCchHHHHhH
Q 002048 169 KFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFEDHM 248 (975)
Q Consensus 169 ~~~~~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~~~lp~~~~~~~ 248 (975)
... ++. ..+ .+++++.... . ..+...+..+.+++..+...+. ++. ..
T Consensus 233 ~~~-----~~~------~~~----~~~~~l~~~~----~----d~~~~vR~~a~~~l~~l~~~~~-------~~~---~~ 279 (588)
T 1b3u_A 233 LLP-----QED------LEA----LVMPTLRQAA----E----DKSWRVRYMVADKFTELQKAVG-------PEI---TK 279 (588)
T ss_dssp HSC-----HHH------HHH----HTHHHHHHHH----T----CSSHHHHHHHHHTHHHHHHHHC-------HHH---HH
T ss_pred hCC-----HHH------HHH----HHHHHHHHHc----c----CCCHHHHHHHHHHHHHHHHHhC-------ccc---ch
Confidence 542 111 112 2233333222 1 2223333444343333322211 111 12
Q ss_pred HHHHHHHHHHhcccCCcccCCCCcCchHHHHHHHHHHHHHHHHHHhHHHHH--hhHHHHHHHHHHHHhccCCCCcchHHH
Q 002048 249 REWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQ--GYLNDFALAVWTLLGNVSQSSSRDSLA 326 (975)
Q Consensus 249 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~f~--~~~~~~~~~~~~~l~~~~~~~~~~~~~ 326 (975)
...++.+...++. .+ +.+|..+++.+..+....+.... ++.+.+++.+...+.. ....+.
T Consensus 280 ~~l~~~l~~~l~d-------~~------~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d-----~~~~vR 341 (588)
T 1b3u_A 280 TDLVPAFQNLMKD-------CE------AEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSD-----ANQHVK 341 (588)
T ss_dssp HTHHHHHHHHHTC-------SS------HHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTC-----SCHHHH
T ss_pred hHHHHHHHHHhCC-------Cc------HHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcC-----CCHHHH
Confidence 2334555555442 11 46788888888888766543211 3344444444444321 123444
Q ss_pred HHHHHHHHhhchhhhhhcccCCCchhhHHHHhhcccCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHHH
Q 002048 327 VTAIKFLTNVSTSVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIAT 406 (975)
Q Consensus 327 ~~~l~fl~~~~~~~~~~~~~~~~~l~~l~~~li~~~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~ 406 (975)
..++..+..+. ..+........++..+. ..+. +....+|.+|...+..+++
T Consensus 342 ~~a~~~l~~l~-----~~~~~~~~~~~l~p~l~-~~l~-----------------------d~~~~Vr~~a~~~l~~l~~ 392 (588)
T 1b3u_A 342 SALASVIMGLS-----PILGKDNTIEHLLPLFL-AQLK-----------------------DECPEVRLNIISNLDCVNE 392 (588)
T ss_dssp HHHHTTGGGGH-----HHHCHHHHHHHTHHHHH-HHHT-----------------------CSCHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHH-----HHhhHhHHHHHHHHHHH-HHhC-----------------------CCchHHHHHHHHHHHHHHH
Confidence 44444444330 00000000111111110 1110 1124578888888888887
Q ss_pred Hhhhh-hHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCc
Q 002048 407 HYRQH-VMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAF 485 (975)
Q Consensus 407 ~~~~~-~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~ 485 (975)
..+.. ..+.++..+.+.+. +.+|+.|.+++.+++.++..+.... +.+.+...+...+.+ ..
T Consensus 393 ~~~~~~~~~~~lp~l~~~~~------d~~~~vr~~~~~~l~~l~~~~~~~~--------~~~~l~~~l~~~l~d----~~ 454 (588)
T 1b3u_A 393 VIGIRQLSQSLLPAIVELAE------DAKWRVRLAIIEYMPLLAGQLGVEF--------FDEKLNSLCMAWLVD----HV 454 (588)
T ss_dssp HSCHHHHHHHHHHHHHHHHT------CSSHHHHHHHHHHHHHHHHHHCGGG--------CCHHHHHHHHHGGGC----SS
T ss_pred hcCHHHHHHHHHHHHHHHhc------CCCchHHHHHHHHHHHHHHHcCHHH--------HHHHHHHHHHHHhcC----Cc
Confidence 66532 23444444444432 4689999999999999987652211 112233444455655 46
Q ss_pred chhHhhHHHHHHHhhccCCHh-HHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHH
Q 002048 486 PMLKAGALKFFTMFRIQIPKI-HAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTS 564 (975)
Q Consensus 486 ~~Lr~ra~~~l~~f~~~~~~~-~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~ 564 (975)
+-+|..|+..++.+...+.++ ....++|.+...+++++..||..|+.++..+..... . .++.+.++..
T Consensus 455 ~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~--------~---~~~~~~~~~~ 523 (588)
T 1b3u_A 455 YAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG--------Q---DITTKHMLPT 523 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH--------H---HHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcC--------H---HHHHHHHHHH
Confidence 889999999999988766544 467889999999999999999999999999876531 1 2367788888
Q ss_pred HHHhcCCCCchhhHHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 002048 565 LFNAFKFPESEENQYIMKCIMRVLG-VAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAV 631 (975)
Q Consensus 565 L~~ll~~~~~~~~~~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~ 631 (975)
|..++++........+++++..+.. ++++.. .+.+.+.+.... +..|+..+....+++..
T Consensus 524 l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~------~~~~~p~l~~l~-~d~d~~vr~~a~~al~~ 584 (588)
T 1b3u_A 524 VLRMAGDPVANVRFNVAKSLQKIGPILDNSTL------QSEVKPILEKLT-QDQDVDVKYFAQEALTV 584 (588)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH------HHHHHHHHHHHT-TCSSHHHHHHHHHHHHH
T ss_pred HHhhCCCCCchHHHHHHHHHHHHHHHhchhhh------HHHHHHHHHHHc-CCCchhHHHHHHHHHHH
Confidence 8888877644344466777777766 555421 123334443432 34455555555555543
No 19
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.43 E-value=1.4e-10 Score=138.15 Aligned_cols=539 Identities=11% Similarity=0.050 Sum_probs=279.5
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc--CC-ChHHHHHHHHHhc-CcChHHHHHHHHHHHhhhhc-----ccCC
Q 002048 7 TLQHLSQCFLHTLSPSPEPRRAAERSLAEMAD--RP-NYGLAVLRLVAEQ-TIDEQIRHAAAVNFKNHLRF-----RWAP 77 (975)
Q Consensus 7 ~~~~l~~~L~~tls~d~~~r~~AE~~L~~~~~--~p-~f~~~Ll~i~~~~-~~~~~vRq~Aai~lKn~I~~-----~W~~ 77 (975)
+...+..++....|+|+.+|..|...|..+-. .| .....++..+.+. +.+..+|+.++-.|.+.... ++..
T Consensus 8 ~~~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ 87 (588)
T 1b3u_A 8 SLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHC 87 (588)
T ss_dssp SSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGGGGGG
T ss_pred CcCcHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCcHHHHHH
Confidence 45567777888888888888888888876432 22 1222233222211 23567888888777755532 1210
Q ss_pred C---------CCCC--C-------CCCcCCCCHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHHhcccCCCCCCc
Q 002048 78 A---------SDRN--S-------GPTLAPILDAEKDQIKSLIVGLM----LTSTPRIQSQLSEALVVVGNHDFPKHWPT 135 (975)
Q Consensus 78 ~---------~~~~--~-------~~~~~~i~~e~K~~Ir~~ll~~l----~~~~~~ir~qla~~i~~Ia~~D~P~~Wp~ 135 (975)
- .++. + +.-...++++ .++..+++.+ .++...+|...+.+++.++.+--+..|++
T Consensus 88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~ 164 (588)
T 1b3u_A 88 LLPPLESLATVEETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAE 164 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 0 0000 0 0000001110 1122222221 12234466666666666655432234667
Q ss_pred hHHHHHHHhcccccCCChhHHhHHHHHHHHHHHhhhccccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCCh
Q 002048 136 LLPELIANLKDAAQSNNYVSINGILGTANSIFKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPV 215 (975)
Q Consensus 136 Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i~k~~~~~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 215 (975)
+++.+.+.++++ ++..+..++.++..+++... ++. ... .+++.+.... + ..+.
T Consensus 165 l~~~l~~l~~d~----~~~VR~~a~~~l~~l~~~~~-----~~~------~~~----~l~~~l~~~~----~----d~~~ 217 (588)
T 1b3u_A 165 LRQYFRNLCSDD----TPMVRRAAASKLGEFAKVLE-----LDN------VKS----EIIPMFSNLA----S----DEQD 217 (588)
T ss_dssp HHHHHHHHHTCS----CHHHHHHHHHHHHHHHHTSC-----HHH------HHH----THHHHHHHHH----T----CSCH
T ss_pred HHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHhc-----HHh------HHH----HHHHHHHHHh----c----CCcH
Confidence 777777776666 66677777777777776432 110 112 2333332222 1 2223
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCchHHHHhHHHHHHHHHHHhcccCCcccCCCCcCchHHHHHHHHHHHHHHHHHHhH
Q 002048 216 ATLKLLFESQRLCCRIFYSLNFQELPEFFEDHMREWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNE 295 (975)
Q Consensus 216 ~~~~~~~~~l~~~lk~~~~~~~~~lp~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~~~~ 295 (975)
..+..+..++..+.+.+ ++ ++.....++.+..+++ +. .|++|..+++.+..+....+
T Consensus 218 ~vr~~a~~~l~~l~~~~--------~~--~~~~~~~~~~l~~~~~-------d~------~~~vR~~a~~~l~~l~~~~~ 274 (588)
T 1b3u_A 218 SVRLLAVEACVNIAQLL--------PQ--EDLEALVMPTLRQAAE-------DK------SWRVRYMVADKFTELQKAVG 274 (588)
T ss_dssp HHHTTHHHHHHHHHHHS--------CH--HHHHHHTHHHHHHHHT-------CS------SHHHHHHHHHTHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhC--------CH--HHHHHHHHHHHHHHcc-------CC------CHHHHHHHHHHHHHHHHHhC
Confidence 33333334333222221 11 1122233444444432 11 17899999999988876553
Q ss_pred HHHHhhHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHhh-ch-h-hhhhcccCCCchhhHHHHhhcccCCCChhhHHH
Q 002048 296 EEFQGYLNDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNV-ST-S-VHHTLFAGEGVIPQICQNIVIPNVRLRDEDEEL 372 (975)
Q Consensus 296 ~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~fl~~~-~~-~-~~~~~~~~~~~l~~l~~~li~~~l~l~~~d~e~ 372 (975)
... +.+.+++.+...+.. ....+...+...+..+ .. . ..+. ..++..++..+. .
T Consensus 275 ~~~--~~~~l~~~l~~~l~d-----~~~~vr~~a~~~l~~~~~~~~~~~~~----~~~~~~l~p~l~-~----------- 331 (588)
T 1b3u_A 275 PEI--TKTDLVPAFQNLMKD-----CEAEVRAAASHKVKEFCENLSADCRE----NVIMSQILPCIK-E----------- 331 (588)
T ss_dssp HHH--HHHTHHHHHHHHHTC-----SSHHHHHHHHHHHHHHHHTSCTTTHH----HHHHHTHHHHHH-H-----------
T ss_pred ccc--chhHHHHHHHHHhCC-----CcHHHHHHHHHHHHHHHHHhChhhhh----hHHHHHHHHHHH-H-----------
Confidence 321 223344444444421 2234555555555544 10 0 0000 012223332221 0
Q ss_pred HhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhh
Q 002048 373 FEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQHV-METVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATK 451 (975)
Q Consensus 373 we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~~~~~~~-~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~ 451 (975)
.. .+..+.+|.+|...+..++...++.. .+.++..+...++ .+++..|.+++.+++.+...
T Consensus 332 -------~l-----~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~------d~~~~Vr~~a~~~l~~l~~~ 393 (588)
T 1b3u_A 332 -------LV-----SDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLK------DECPEVRLNIISNLDCVNEV 393 (588)
T ss_dssp -------HH-----TCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHT------CSCHHHHHHHHTTCHHHHHH
T ss_pred -------Hh-----cCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC------CCchHHHHHHHHHHHHHHHh
Confidence 01 01235688899999998888776543 3445555555553 34678899999998888654
Q ss_pred hcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhH-HHhHHHHHHHhhcCCCchHHHHH
Q 002048 452 KAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIH-AFQFFPDLVRFLGAESNVVHSYA 530 (975)
Q Consensus 452 ~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~-~~~~~~~l~~~L~~~~~~V~~~A 530 (975)
. |.. ...+.+...+...+.+ ....+|..++.+++.+...+.++. ...+++.++..|+|++..||..|
T Consensus 394 ~--~~~------~~~~~~lp~l~~~~~d----~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a 461 (588)
T 1b3u_A 394 I--GIR------QLSQSLLPAIVELAED----AKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAA 461 (588)
T ss_dssp S--CHH------HHHHHHHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHH
T ss_pred c--CHH------HHHHHHHHHHHHHhcC----CCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 3 100 0111122222333343 467899999999999887655433 34688999999999999999999
Q ss_pred HHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh-hccchhhhHHHHHHHHHHHH
Q 002048 531 ASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG-VAEISNEVAAPCISGLTSIL 609 (975)
Q Consensus 531 a~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~~l 609 (975)
+.++..++.... .+ .+.+.++..|..+++..........+.++..+.. ++.+ .|...+++. +
T Consensus 462 ~~~l~~l~~~~~--------~~---~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~--~~~~~~~~~----l 524 (588)
T 1b3u_A 462 TSNLKKLVEKFG--------KE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD--ITTKHMLPT----V 524 (588)
T ss_dssp HHHHHHHHHHHC--------HH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH--HHHHHTHHH----H
T ss_pred HHHHHHHHHHhC--------ch---hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHH----H
Confidence 999999887531 11 2345666666666654432223344556655555 4443 233333333 3
Q ss_pred HHHHhCCCCCchhHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhcccccchHHHHHHHH
Q 002048 610 NEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDVTEFLPYAFQLLA 675 (975)
Q Consensus 610 ~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~~~~~~~~~l~ll~ 675 (975)
....++ .++..+..+..+++.+...+ + + ..+.+.+.|.+...++....+.-..+.+.+.
T Consensus 525 ~~~l~d-~~~~Vr~~a~~~l~~l~~~~-~--~---~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~ 583 (588)
T 1b3u_A 525 LRMAGD-PVANVRFNVAKSLQKIGPIL-D--N---STLQSEVKPILEKLTQDQDVDVKYFAQEALT 583 (588)
T ss_dssp HHGGGC-SCHHHHHHHHHHHHHHGGGS-C--H---HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HhhCCC-CCchHHHHHHHHHHHHHHHh-c--h---hhhHHHHHHHHHHHcCCCchhHHHHHHHHHH
Confidence 333333 24556678888888887765 2 1 1234678888888654433344445555444
No 20
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.13 E-value=8.1e-06 Score=103.04 Aligned_cols=670 Identities=10% Similarity=0.043 Sum_probs=339.4
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHhcC------CChHHHHHHHHHhc--C-cChHHHHHHHHHHHhhhh----ccc
Q 002048 9 QHLSQCFLHTLSPSPEPRRAAERSLAEMADR------PNYGLAVLRLVAEQ--T-IDEQIRHAAAVNFKNHLR----FRW 75 (975)
Q Consensus 9 ~~l~~~L~~tls~d~~~r~~AE~~L~~~~~~------p~f~~~Ll~i~~~~--~-~~~~vRq~Aai~lKn~I~----~~W 75 (975)
+.|.+.+....+..+.+|++.-.-+..+-+. |++...|.+.+.+. + .+...+..+...|+.... ..+
T Consensus 103 ~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~ 182 (963)
T 2x19_B 103 AQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRL 182 (963)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccC
Confidence 3455555443223577888888777766543 56666666655431 0 133456666666665442 222
Q ss_pred ----CCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcccCC-CCCCchHHHHHHHhcccc
Q 002048 76 ----APASDRNSGPTLAPILDAEKDQIKSLIVGLMLTST--PRIQSQLSEALVVVGNHDFP-KHWPTLLPELIANLKDAA 148 (975)
Q Consensus 76 ----~~~~~~~~~~~~~~i~~e~K~~Ir~~ll~~l~~~~--~~ir~qla~~i~~Ia~~D~P-~~Wp~Ll~~l~~~l~~~~ 148 (975)
+.... ..+... -..|-+.+.+.+.... ..++.....|+...++.+++ ..++.+++.+.+.+.
T Consensus 183 ~~~~r~~~~-------~~l~~~-~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~--- 251 (963)
T 2x19_B 183 PQYRKGLVR-------TSLAVE-CGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQ--- 251 (963)
T ss_dssp ----------------CCSGGG-HHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTT---
T ss_pred cHHHHHHHH-------HHHHHH-HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhC---
Confidence 11000 023332 2334444445543332 24777777777766666665 467889999998885
Q ss_pred cCCChhHHhHHHHHHHHHHHhhhccccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHH
Q 002048 149 QSNNYVSINGILGTANSIFKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLC 228 (975)
Q Consensus 149 ~~~d~~~~~~~L~~l~~i~k~~~~~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 228 (975)
++.....++.++.+++.++.. .+ + ...+..+.+.++.+...+...+. ..+...... +
T Consensus 252 ---~~~~~~~a~~~l~~i~~~~~~----~~-~---~~~~~~l~~~~~~~~~~~~~~~~-----~~d~~~~~~-------~ 308 (963)
T 2x19_B 252 ---DSELFDSSVEAIVNAISQPDA----QR-Y---VNTLLKLIPLVLGLQEQLRQAVQ-----NGDMETSHG-------I 308 (963)
T ss_dssp ---STTTHHHHHHHHHHHHTCTTG----GG-C---HHHHHHHHHHHHTTHHHHHHHHH-----TTCHHHHHH-------H
T ss_pred ---CchHHHHHHHHHHHHHccccc----cc-C---HHHHHHHHHHHHhhHHHHHHHHH-----CCCHHHHHH-------H
Confidence 344567899999999875432 11 1 11233333333333222211111 122222222 2
Q ss_pred HHHhhhcccCCCchHH------HHhHHHHHHHHHHHhcccCCcccCCCCcCchHHHHHHHHHHHHHHHHH----------
Q 002048 229 CRIFYSLNFQELPEFF------EDHMREWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMK---------- 292 (975)
Q Consensus 229 lk~~~~~~~~~lp~~~------~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~---------- 292 (975)
++++..+... .+..+ .+.+..+++.+..+...+.. ...+++.. ..+++....+.+
T Consensus 309 ~~l~~~~~~~-~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~-~~~~~~v~-------~~~l~fw~~l~~~~~~~~~~~~ 379 (963)
T 2x19_B 309 CRIAVALGEN-HSRALLDQVEHWQSFLALVNMIMFCTGIPGH-YPVNETTS-------SLTLTFWYTLQDDILSFEAEKQ 379 (963)
T ss_dssp HHHHHHHHHH-HHHHHHHCGGGHHHHHHHHHHHHHHHTCSSC-TTTTCGGG-------GGGHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHH-hHHHHHcCccchHHHHHHHHHHHHHHcCCCC-CCchhhhh-------hhhHHHHHHHHHHHHhhhhhhh
Confidence 2332222100 01111 24455666666665443110 00112111 112222222222
Q ss_pred -HhHHHHHhhHHHHHHHHHHHHhccCCC------C-----cchHHHHHHHHHHHhhchhhhhhcccCCCchhhHHHHhhc
Q 002048 293 -MNEEEFQGYLNDFALAVWTLLGNVSQS------S-----SRDSLAVTAIKFLTNVSTSVHHTLFAGEGVIPQICQNIVI 360 (975)
Q Consensus 293 -~~~~~f~~~~~~~~~~~~~~l~~~~~~------~-----~~~~~~~~~l~fl~~~~~~~~~~~~~~~~~l~~l~~~li~ 360 (975)
.....|.+++..+++.++..+.. ... . .++.....+-+++..+. ..+. ...+..+.. .+-
T Consensus 380 ~~~~~~~~~~l~~l~~~ll~~~~~-p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~-----~~~~-~~~l~~~~~-~l~ 451 (963)
T 2x19_B 380 AVYQQVYRPVYFQLVDVLLHKAQF-PSDEEYGFWSSDEKEQFRIYRVDISDTLMYVY-----EMLG-AELLSNLYD-KLG 451 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH-----HHHT-HHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-CCcccccCCChhHHHHHHHHHHHHHHHHHHHH-----HHcc-HHHHHHHHH-HHH
Confidence 12234556777777666665531 111 0 01112223333333330 0110 011111111 110
Q ss_pred ccCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHhccCCCCCchh
Q 002048 361 PNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQ---HVMETVSVQIQNLLTSFAANPVANWKD 437 (975)
Q Consensus 361 ~~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~~~~~---~~~~~l~~~i~~~l~~~~~~~~~~w~~ 437 (975)
..+ +.+ ..+..+..|.+|.-.+..+++...+ ...+.+++ .+.+. +.++.+.
T Consensus 452 ~~l-------~~~------------~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~----~l~~l---~~~~~~v 505 (963)
T 2x19_B 452 RLL-------TSS------------EEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIG----LIPRI---SISNVQL 505 (963)
T ss_dssp HHH-------HTC------------CCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHH----HGGGS---CCCSHHH
T ss_pred HHH-------Hhc------------CCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHH----HHHhC---CCCcHHH
Confidence 000 000 0112455678888888888876432 22222222 22222 2245678
Q ss_pred HHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCH---hHHHhHHHH
Q 002048 438 KDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPK---IHAFQFFPD 514 (975)
Q Consensus 438 keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~---~~~~~~~~~ 514 (975)
|.++++++|..+..+... .++-.-+.+.++..+. ++-++.+||+.+.++...+.+ .++..+++.
T Consensus 506 r~~~~~~l~~~~~~l~~~-------~~~l~~vl~~l~~~l~------~~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~ 572 (963)
T 2x19_B 506 ADTVMFTIGALSEWLADH-------PVMINSVLPLVLHALG------NPELSVSSVSTLKKICRECKYDLPPYAANIVAV 572 (963)
T ss_dssp HHHHHHHHHHTHHHHHHC-------HHHHTTTHHHHHHHTT------CGGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-------HHHHHHHHHHHHHHhC------CchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999988765211 0000111122333332 277999999999998764432 457777777
Q ss_pred HHHhhcCC--CchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcC----CC-CchhhH---HHHHHH
Q 002048 515 LVRFLGAE--SNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFK----FP-ESEENQ---YIMKCI 584 (975)
Q Consensus 515 l~~~L~~~--~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~----~~-~~~~~~---~l~~~l 584 (975)
+...++.+ +..++..+..|+..++..- ..+...||+..+++-+...++ .. +..... ..++++
T Consensus 573 l~~~l~~~~~~~~~~~~~~eai~~i~~~~--------~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l 644 (963)
T 2x19_B 573 SQDVLMKQIHKTSQCMWLMQALGFLLSAL--------QVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLL 644 (963)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTS--------CHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCChHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 77777753 4578888888888887531 135677888888777766553 22 111112 445666
Q ss_pred HHHHh-hccc----------------------hhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCc
Q 002048 585 MRVLG-VAEI----------------------SNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDP 641 (975)
Q Consensus 585 ~~vi~-~~~~----------------------i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~ 641 (975)
..++. ++.. +.++...+++.+..++... .+++.....+..++..++..+ +
T Consensus 645 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~v~e~~~~~l~~~~~~~----~ 717 (963)
T 2x19_B 645 SNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKW---LNDAQVVEAVCAIFEKSVKTL----L 717 (963)
T ss_dssp HHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHS----S
T ss_pred HHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHHHhh----c
Confidence 66666 4421 2223333333333333322 223333344555666665554 2
Q ss_pred chHHHHHHhhHHHHHHHHhcccccchHHHHHHHHHHHH--hcCCCCchhHHHHHHhhcCccc--c-----ccCCCccchH
Q 002048 642 SLISAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIE--LNRPPLSSNYMQIFNLLLSPDS--W-----KRSSNVPALV 712 (975)
Q Consensus 642 ~~~~~l~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~--~~~~~~~~~~~~lf~~l~~~~l--~-----~~~~~l~~~~ 712 (975)
+.+..+.+.+++.+...+... . .+..+.+++.++. .......+.+..++..++...+ . +.++.....+
T Consensus 718 ~~~~~~l~~~~~~l~~~~~~~--~-~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f 794 (963)
T 2x19_B 718 DDFAPMVPQLCEMLGRMYSTI--P-QASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFM 794 (963)
T ss_dssp STTGGGHHHHHHHHHHHHHHS--C-CHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHcC--C-ccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHH
Confidence 223333444444444444331 1 3567888888888 4432345555555554444321 1 1245778889
Q ss_pred HHHHHHHccCccchhccCc-hHHHHHHHHHhhcCCCCc--chHHHHHHHHHHhcch-h----hHhhhHHHHHHHHHHHhh
Q 002048 713 RLLQAFLQKVPREIAQEGK-LREVLGIFNMLVLSPSTD--EQGFYVLNTIVESLEY-G----VIAQFVPHIWGVLFTRLQ 784 (975)
Q Consensus 713 ~~L~~~i~~~~~~~~~~~~-~~~il~i~~~ll~~~~~~--~~a~~ll~~ii~~~~~-~----~~~~~l~~il~~~l~~L~ 784 (975)
.++..++...+..++..+. +..++..+...+.....+ ..++..+..++...+. . .+.++.+.++..++..+.
T Consensus 795 ~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 874 (963)
T 2x19_B 795 QLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIG 874 (963)
T ss_dssp HHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999998886555 888998888887643333 3477888888866431 1 235677888888888876
Q ss_pred cC
Q 002048 785 NK 786 (975)
Q Consensus 785 ~~ 786 (975)
..
T Consensus 875 ~~ 876 (963)
T 2x19_B 875 GQ 876 (963)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 21
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.03 E-value=1.3e-05 Score=100.76 Aligned_cols=314 Identities=14% Similarity=0.161 Sum_probs=193.2
Q ss_pred hhhhHHHHHHHHHHHHHh-----h-h------hhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCcc
Q 002048 391 DTRRRIACELLKGIATHY-----R-Q------HVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSI 458 (975)
Q Consensus 391 ~s~R~~A~~ll~~L~~~~-----~-~------~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~ 458 (975)
+..|.||.-.+.++++.. + . .+.+.+.+++...++. .+ ..+...|.+|+.++|.++..+..
T Consensus 419 w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~--~~-~~~p~vr~~a~~~lg~~~~~~~~---- 491 (960)
T 1wa5_C 419 WKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTS--NN-IPHIILRVDAIKYIYTFRNQLTK---- 491 (960)
T ss_dssp HHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHC--SS-CSCHHHHHHHHHHHHHTGGGSCH----
T ss_pred HHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcC--CC-CCCceehHHHHHHHHHHHhhCCH----
Confidence 567888888888887531 1 1 3444444555555542 11 12568899999999998765310
Q ss_pred ccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhcc----------CCH----hHHHhHHHHHHHhhcCCC-
Q 002048 459 STDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQ----------IPK----IHAFQFFPDLVRFLGAES- 523 (975)
Q Consensus 459 ~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~----------~~~----~~~~~~~~~l~~~L~~~~- 523 (975)
..+...+ ..++..+.+ +.+.+|.+||+.+.+|.+. +.+ .++..+++.++..++...
T Consensus 492 ----~~l~~~l-~~l~~~L~d----~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~ 562 (960)
T 1wa5_C 492 ----AQLIELM-PILATFLQT----DEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGS 562 (960)
T ss_dssp ----HHHHHHH-HHHHHHTTC----SCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCC
T ss_pred ----HHHHHHH-HHHHHHhCC----CChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccC
Confidence 1133322 234445554 4689999999999998753 122 457778888888877631
Q ss_pred ----chHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCC----Cc-hhhHHHHHHHHHHHh-hc-c
Q 002048 524 ----NVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFP----ES-EENQYIMKCIMRVLG-VA-E 592 (975)
Q Consensus 524 ----~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~----~~-~~~~~l~~~l~~vi~-~~-~ 592 (975)
......+..||..++..- .+.+.||+..+++.|...+... +. .-..++++++..++. .+ +
T Consensus 563 ~~~~~~~~e~l~~al~~vv~~~---------~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~ 633 (960)
T 1wa5_C 563 SPEKLAENEFLMRSIFRVLQTS---------EDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQ 633 (960)
T ss_dssp CHHHHTSCHHHHHHHHHHHHHH---------TTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGG
T ss_pred CCCcccccHHHHHHHHHHHHHH---------HHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcc
Confidence 113356788888877653 4678999999999998887542 21 123467788877766 33 3
Q ss_pred chhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHH--HHHhcccccchHHH
Q 002048 593 ISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQ--IILQNDVTEFLPYA 670 (975)
Q Consensus 593 ~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~--~il~~~~~~~~~~~ 670 (975)
.+.++...++ +.+..+..+.. ..|..++++.++.++... ++-+ .....++|.+. .+++.. .+++.+
T Consensus 634 ~~~~~~~~~~----p~~~~iL~~~~-~~~~~~~~~i~~~l~~~~-~~~~----~~~~~~~~~l~~~~~~~~~--~~~~~~ 701 (960)
T 1wa5_C 634 NLPLLVDSMM----PTFLTVFSEDI-QEFIPYVFQIIAFVVEQS-ATIP----ESIKPLAQPLLAPNVWELK--GNIPAV 701 (960)
T ss_dssp GHHHHHHHHH----HHHHHHHHTTC-TTTHHHHHHHHHHHHHHC-SSCC----TTTGGGHHHHTSGGGGCCT--TTHHHH
T ss_pred hHHHHHHHHH----HHHHHHHHhhh-HhhHHHHHHHHHHHHHhc-cCCC----HHHHHHHHHHcCHHHhcCC--CCchhH
Confidence 4444444444 44434433322 346678999999888874 2222 23345666666 555544 478888
Q ss_pred HHHHHHHHHhcCCCCc--hhHHHHHHhhcCccccccCCCccchHHHHHHHHccCccc-hhccCchHHHHHHHHHhhcCCC
Q 002048 671 FQLLAQLIELNRPPLS--SNYMQIFNLLLSPDSWKRSSNVPALVRLLQAFLQKVPRE-IAQEGKLREVLGIFNMLVLSPS 747 (975)
Q Consensus 671 l~ll~~ll~~~~~~~~--~~~~~lf~~l~~~~l~~~~~~l~~~~~~L~~~i~~~~~~-~~~~~~~~~il~i~~~ll~~~~ 747 (975)
..++..++...+..+. +.+...+..++.. +. .-+.++.++..++...+.. |. +|+..++.++...+....
T Consensus 702 ~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~--~~~~a~~ll~~i~~~~~~~~~~--~yl~~i~~~l~~~l~~~~ 774 (960)
T 1wa5_C 702 TRLLKSFIKTDSSIFPDLVPVLGIFQRLIAS---KA--YEVHGFDLLEHIMLLIDMNRLR--PYIKQIAVLLLQRLQNSK 774 (960)
T ss_dssp HHHHHHHHHHHGGGCSCSHHHHHHHHHHHTC---TT--THHHHHHHHHHHHHHSCHHHHG--GGHHHHHHHHHHGGGSSC
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHhCC---Cc--ccchHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHHHHhhCC
Confidence 8888888765443233 3333444443321 11 1167888999998877776 44 489999988777766543
Q ss_pred C
Q 002048 748 T 748 (975)
Q Consensus 748 ~ 748 (975)
.
T Consensus 775 ~ 775 (960)
T 1wa5_C 775 T 775 (960)
T ss_dssp C
T ss_pred c
Confidence 3
No 22
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.03 E-value=1.3e-05 Score=101.16 Aligned_cols=361 Identities=10% Similarity=0.054 Sum_probs=203.9
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHH
Q 002048 390 VDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFF 469 (975)
Q Consensus 390 ~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l 469 (975)
.+..|.+|.-.+..+++...+...+.+-..+. .+.+...+ ..+.+.|.+++.++|..+..+.+.. ..+...+
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~-d~~~~vr~~a~~~l~~~~~~l~~~~------~~l~~vl 548 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYE-KLNVKLLGTALETMGSYCNWLMENP------AYIPPAI 548 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTT-TSCHHHHHHHHHHHHHTHHHHC----------CHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCcc-ccCHHHHHHHHHHHHHHHHHHhcCH------HHHHHHH
Confidence 35567888888888876644322222222222 44333211 1256889999999999987663211 1123322
Q ss_pred HHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCH---hHHHhHHHHHHHhhcCC--CchHHHHHHHHHHHHHccccCC
Q 002048 470 TSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPK---IHAFQFFPDLVRFLGAE--SNVVHSYAASCIEKLLQVKDEG 544 (975)
Q Consensus 470 ~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~---~~~~~~~~~l~~~L~~~--~~~V~~~Aa~aL~~~~~~~~~~ 544 (975)
+.++..+ + +-++.+||+.+..+.+.+.. .++..+++.+...++.+ +..++..+..|+..++..-
T Consensus 549 -~~l~~~l-~------~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~--- 617 (971)
T 2x1g_F 549 -NLLVRGL-N------SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL--- 617 (971)
T ss_dssp -HHHHHHH-H------SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS---
T ss_pred -HHHHHHh-C------hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC---
Confidence 2333333 1 45799999999999876542 45666777777777763 5678888888888877631
Q ss_pred CccccccccccchHHHHHHHHH----HhcCCCC--chhhH---HHHHHHHHHHh-hcc-------------chhhhHHHH
Q 002048 545 GKSRYNSADITPYLSVLMTSLF----NAFKFPE--SEENQ---YIMKCIMRVLG-VAE-------------ISNEVAAPC 601 (975)
Q Consensus 545 ~~~~~~~~~l~p~l~~il~~L~----~ll~~~~--~~~~~---~l~~~l~~vi~-~~~-------------~i~p~~~~l 601 (975)
..+...||+..+++.++ .+++... ..... ..++++..++. ++. .+.|+...+
T Consensus 618 -----~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i 692 (971)
T 2x1g_F 618 -----RPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRT 692 (971)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTT
T ss_pred -----CHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHH
Confidence 13455566555555544 4444331 11112 23344455544 332 234444444
Q ss_pred HHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhcccccchHHHHHHHHHHHHhc
Q 002048 602 ISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIELN 681 (975)
Q Consensus 602 ~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~~ 681 (975)
++.+..++. ..++++.+...+..+++.++..+++ ....+.+.++|.+...+++. +. +.++.+++.++...
T Consensus 693 ~~~l~~~l~---~~~~~~~v~e~~~~~~~~~~~~~~~----~~~p~l~~~~~~l~~~~~~~--~~-~~~l~l~~~~i~~~ 762 (971)
T 2x1g_F 693 MPIFKRIAE---MWVEEIDVLEAACSAMKHAITNLRS----SFQPMLQDLCLFIVASFQTR--CC-APTLEISKTAIVMF 762 (971)
T ss_dssp HHHHHHHHH---HTTTCHHHHHHHHHHHHHHHHHHHC------CTHHHHHHHHHHHHCC----CC-HHHHHHHHHHHTTC
T ss_pred HHHHHHHHH---hccccHHHHHHHHHHHHHHHHhhhh----hccccHHHHHHHHHHHHhcC--Cc-hHHHHHHHHHHHHh
Confidence 444443332 1233445556777788888877632 13345666677777666653 22 56889999998865
Q ss_pred CC--CCchhHHHHHHhhcCccc----------c-ccCCCccchHHHHHHHHccCccchhccCc-hHHHHHHHHHhhcCCC
Q 002048 682 RP--PLSSNYMQIFNLLLSPDS----------W-KRSSNVPALVRLLQAFLQKVPREIAQEGK-LREVLGIFNMLVLSPS 747 (975)
Q Consensus 682 ~~--~~~~~~~~lf~~l~~~~l----------~-~~~~~l~~~~~~L~~~i~~~~~~~~~~~~-~~~il~i~~~ll~~~~ 747 (975)
.. .+.+.+.+++..+....+ . +.++...+.+.++..++.+.+..+...+. ++.++......+....
T Consensus 763 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~ 842 (971)
T 2x1g_F 763 FKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPE 842 (971)
T ss_dssp CC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSC
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCC
Confidence 43 245556666655443211 1 12346688889999999999999987767 8899988777776443
Q ss_pred Cc--chHHHHHHHHHHhcc-hhhHhhhH----HHHHHHHHHHhh
Q 002048 748 TD--EQGFYVLNTIVESLE-YGVIAQFV----PHIWGVLFTRLQ 784 (975)
Q Consensus 748 ~~--~~a~~ll~~ii~~~~-~~~~~~~l----~~il~~~l~~L~ 784 (975)
.+ ..+++.+..++..-+ .+.+.+++ +.++..++..+.
T Consensus 843 ~~~~~s~~~fl~~~i~~~~~~~~~~~~~~~~g~~l~~~l~~~~~ 886 (971)
T 2x1g_F 843 SGAIRNSIQFLTHFVMQSRNHAHVTEVVLATGEQTLYTAMMCVG 886 (971)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHhHHHHHHHHHHHhc
Confidence 33 357777777665531 12333333 445555555443
No 23
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.00 E-value=2.1e-05 Score=97.93 Aligned_cols=299 Identities=9% Similarity=0.081 Sum_probs=175.6
Q ss_pred cchhHhhHHHHHHHhhccCCH----hHHHhHHHHHHHhhc-----CCCchHHHHHHHHHHHHHccccCCCcccccccccc
Q 002048 485 FPMLKAGALKFFTMFRIQIPK----IHAFQFFPDLVRFLG-----AESNVVHSYAASCIEKLLQVKDEGGKSRYNSADIT 555 (975)
Q Consensus 485 ~~~Lr~ra~~~l~~f~~~~~~----~~~~~~~~~l~~~L~-----~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~ 555 (975)
.---|-++||.+|..++.+.+ ..+.++++.+++.+. |+...||..+|+++.++.+.-. .-.
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~----------~~~ 535 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLK----------AHW 535 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHH----------HCH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHh----------ccH
Confidence 456788899999999887754 457888998888886 3567788889999998777531 113
Q ss_pred chHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh-hccch--------hhhHHHHHHHHHHHHHHHHhCCCCCchhHHHH
Q 002048 556 PYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG-VAEIS--------NEVAAPCISGLTSILNEVCKNPKSPIFNHYLF 626 (975)
Q Consensus 556 p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~-~~~~i--------~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~ 626 (975)
.+++++++.|+..+.+......+....++..++. ++..+ .||...+++.+..++. . -++.-...++
T Consensus 536 ~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~----~-l~~~~~~~ly 610 (1023)
T 4hat_C 536 NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTA----D-LQPQQVHTFY 610 (1023)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHT----T-SCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHH----h-CCHHHHHHHH
Confidence 4799999999998865432234466778888888 77665 4788888777666542 1 1233346899
Q ss_pred HHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhcc------cccc------hHHH---HHHHHHHHHhcCCCCchhHHH
Q 002048 627 ESVAVLVRRACQRDPSLISAFEASILPSLQIILQND------VTEF------LPYA---FQLLAQLIELNRPPLSSNYMQ 691 (975)
Q Consensus 627 e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~------~~~~------~~~~---l~ll~~ll~~~~~~~~~~~~~ 691 (975)
|+++++++++ . +.+....+.+.++|.....+++= ...+ .... ++.++.+......+..|.+..
T Consensus 611 eai~~vi~~~-~-~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~~ 688 (1023)
T 4hat_C 611 KACGIIISEE-R-SVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGH 688 (1023)
T ss_dssp HHHHHHHTTC-C-SHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHHHHHHHhC-C-CHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 9999999986 2 23335555666666555443320 0111 1222 222222222222224455555
Q ss_pred HHHhhcCcc------c---cccCC--------------CccchHHHHHHHHccCcc-chhccCchHHH----HHHHHHhh
Q 002048 692 IFNLLLSPD------S---WKRSS--------------NVPALVRLLQAFLQKVPR-EIAQEGKLREV----LGIFNMLV 743 (975)
Q Consensus 692 lf~~l~~~~------l---~~~~~--------------~l~~~~~~L~~~i~~~~~-~~~~~~~~~~i----l~i~~~ll 743 (975)
+|+.+++.- + ....| .-.++++++..|+.+.++ +.+.+..++++ +.-+.+..
T Consensus 689 i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~ 768 (1023)
T 4hat_C 689 IYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNV 768 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHhCC
Confidence 566555420 0 00111 113455777788877643 22222234444 44444421
Q ss_pred cCCCCcchHHHHHHHHHHhcchhhHhhhHHHHHHHHH----HHhhcC--chhhHHHHHHHHHHHH
Q 002048 744 LSPSTDEQGFYVLNTIVESLEYGVIAQFVPHIWGVLF----TRLQNK--RTVKFVKSLLIFMSLF 802 (975)
Q Consensus 744 ~~~~~~~~a~~ll~~ii~~~~~~~~~~~l~~il~~~l----~~L~~~--~~~~~~~~~i~~~~~~ 802 (975)
+..-+.+.+.+..+++.+++ +.+.+.++.|+.+++ +.+.+. ..+.+...|...+..+
T Consensus 769 -~~~r~~~vL~l~s~iv~~~~-~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~ 831 (1023)
T 4hat_C 769 -PDARDAEVLNCMTTVVEKVG-HMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVI 831 (1023)
T ss_dssp -GGGCCHHHHHHHHHHHHHHG-GGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHH
T ss_pred -hhhccHHHHHHHHHHHHHHH-HhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHH
Confidence 11234678899999999995 556677777776654 445532 2344444544444433
No 24
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.73 E-value=2.1e-05 Score=92.91 Aligned_cols=355 Identities=12% Similarity=0.147 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCCCCCC--chHHHHHHHhcccccCCChhHHhHHHHHHHHHHHhhhcc
Q 002048 96 DQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWP--TLLPELIANLKDAAQSNNYVSINGILGTANSIFKKFRYQ 173 (975)
Q Consensus 96 ~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P~~Wp--~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i~k~~~~~ 173 (975)
..+-..+..++.++++.||+..+.++.+|++. .|+.++ ++++.+.++++++ |+..+.+|+.+|.++++.-...
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~-~p~~~~~~~~~~~l~~lL~d~----d~~V~~~A~~aL~~i~~~~~~~ 194 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDI-NAQMVEDQGFLDSLRDLIADS----NPMVVANAVAALSEISESHPNS 194 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHS-SCCCHHHHHHHHHHHHTTSCS----CHHHHHHHHHHHHHHTTSCCSC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhh-ChhhcccccHHHHHHHHhCCC----ChhHHHHHHHHHHHHHhhCCCc
Confidence 34445566777777788999999999999995 588888 5999999999987 9999999999999998742110
Q ss_pred --cc-chhhhhhHHHHHHHhhHH----HHHHHH-----------HHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhc
Q 002048 174 --FK-TNDLLLDLKYCLDNFAAP----LLEIFL-----------KTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSL 235 (975)
Q Consensus 174 --~~-~~~~~~~l~~il~~~~~~----l~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~ 235 (975)
+. .......+-..+...-|- ++.++. .+...+... ....+.+ ...++.+.+..+....
T Consensus 195 ~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~-l~~~~~~---V~~ea~~~i~~l~~~~ 270 (591)
T 2vgl_B 195 NLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPR-LSHANSA---VVLSAVKVLMKFLELL 270 (591)
T ss_dssp CSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTC-SCSSTTH---HHHHHHHHHHHSCCSC
T ss_pred cchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHH-HcCCChH---HHHHHHHHHHHHhhcc
Confidence 00 000011111111111010 000000 000000000 0011111 1112221111111000
Q ss_pred ccCCCchHHHHhHHHHHHHHHHHhcccCCcccCCCCcCchHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHhc
Q 002048 236 NFQELPEFFEDHMREWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQGYLNDFALAVWTLLGN 315 (975)
Q Consensus 236 ~~~~lp~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~l~~ 315 (975)
..-|+.+........+.+..++. .+ ..+|..+++.+..+..++++.+.+++..| +
T Consensus 271 --~~~~~~~~~~~~~~~~~L~~L~~--------~d------~~vr~~aL~~l~~i~~~~p~~~~~~~~~~-------~-- 325 (591)
T 2vgl_B 271 --PKDSDYYNMLLKKLAPPLVTLLS--------GE------PEVQYVALRNINLIVQKRPEILKQEIKVF-------F-- 325 (591)
T ss_dssp --CBTTBSHHHHHHHTHHHHHHHTT--------SC------HHHHHHHHHHHHHHHHHCCSTTTTCTTTT-------S--
T ss_pred --CCCHHHHHHHHHHHHHHHHHHhc--------CC------ccHHHHHHHHHHHHHHhChHHHHHHHHhh-------e--
Confidence 00112222222222222222211 00 35666677777777766665554443221 0
Q ss_pred cCCCCcchHHHHHHHHHHHhhchhhhhhcccCCCchhhHHHHhhcccCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhH
Q 002048 316 VSQSSSRDSLAVTAIKFLTNVSTSVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRR 395 (975)
Q Consensus 316 ~~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~~~~l~~l~~~li~~~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~ 395 (975)
........+...+++.+..+. ++.++..++..+. . |+.+ .....|.
T Consensus 326 -~~~~d~~~Ir~~al~~L~~l~---------~~~nv~~iv~~L~-~------------------~l~~-----~d~~~r~ 371 (591)
T 2vgl_B 326 -VKYNDPIYVKLEKLDIMIRLA---------SQANIAQVLAELK-E------------------YATE-----VDVDFVR 371 (591)
T ss_dssp -CCTTSCHHHHHHHHHHHHHTC---------CSSTHHHHHHHHH-H------------------HTTS-----SCHHHHH
T ss_pred -eccCChHHHHHHHHHHHHHHC---------ChhhHHHHHHHHH-H------------------HHhc-----CCHHHHH
Confidence 111112456677777777651 1234444444332 1 2211 1234577
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhccc
Q 002048 396 IACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVP 475 (975)
Q Consensus 396 ~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p 475 (975)
.+..-+..++.+|+.. ...+++.+.+++.. ..++..+++ +.+++.+..+..+ . .......+. .
T Consensus 372 ~~v~aI~~la~~~~~~-~~~~v~~Ll~ll~~-----~~~~v~~e~-i~~l~~ii~~~p~-~-----~~~~v~~L~----~ 434 (591)
T 2vgl_B 372 KAVRAIGRCAIKVEQS-AERCVSTLLDLIQT-----KVNYVVQEA-IVVIRDIFRKYPN-K-----YESIIATLC----E 434 (591)
T ss_dssp HHHHHHHHHHTTCHHH-HHHHHHHHHHHHHT-----CCHHHHHHH-HHHHHHHHHHSCS-S-----CCTTHHHHH----H
T ss_pred HHHHHHHHHHHhChhH-HHHHHHHHHHHHcc-----cchHHHHHH-HHHHHHHHHHCcc-h-----HHHHHHHHH----H
Confidence 7788888999888643 34555666666652 234566665 4566665443211 0 011122222 2
Q ss_pred ccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHcc
Q 002048 476 ELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQV 540 (975)
Q Consensus 476 ~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~ 540 (975)
.+.+. ..|-+|..++|++|+|.+.++. ...+++.+++.+.+.+..||.++..|+.++...
T Consensus 435 ~l~~~---~~~~~~~~~~wilGey~~~~~~--~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~ 494 (591)
T 2vgl_B 435 NLDSL---DEPDARAAMIWIVGEYAERIDN--ADELLESFLEGFHDESTQVQLTLLTAIVKLFLK 494 (591)
T ss_dssp TTTTC---CSHHHHHHHHHHHHTTCTTCTT--HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHhc---cCHHHHHHHHHHHHcccccccC--HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhc
Confidence 23321 4677899999999999987642 346677777777777889999999999988764
No 25
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.67 E-value=0.00099 Score=84.43 Aligned_cols=378 Identities=10% Similarity=0.029 Sum_probs=196.6
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCC---CCchhHHHHHHHHHHHHhhhcCCCccccCcccHH
Q 002048 390 VDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPV---ANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQ 466 (975)
Q Consensus 390 ~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~---~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~ 466 (975)
.|..|.+|.-.+.++++...+.....++..+.+.+.+...... +....+..+++++|..+.-+... + ..+.
T Consensus 466 ~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-----~-~~l~ 539 (1049)
T 3m1i_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-----W-NFLR 539 (1049)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-----H-HHHH
T ss_pred CHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-----H-HHHH
Confidence 3556778888888887644332212222222222222211101 12344555778888776544210 0 0122
Q ss_pred HHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCH-----------hHHHhHHHHHHHhhcCCCchHHHHHHHHHH
Q 002048 467 SFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPK-----------IHAFQFFPDLVRFLGAESNVVHSYAASCIE 535 (975)
Q Consensus 467 ~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~-----------~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~ 535 (975)
. +.+.++..+.+ +++-++.+||+.+.+|.....+ .++..+++.+...++..+.--+.....|+.
T Consensus 540 ~-vl~~ll~~l~~----~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~ 614 (1049)
T 3m1i_C 540 T-VILKLFEFMHE----THEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACG 614 (1049)
T ss_dssp H-HHHHHHHHTTS----SCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHH
T ss_pred H-HHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2 22334445554 4799999999999999865442 335666666666666544333445566677
Q ss_pred HHHccccCCCccccccccccchHHHHHHHHH----HhcCC----CC---ch----hhHHHHHHHHHHHh-hccchhhhHH
Q 002048 536 KLLQVKDEGGKSRYNSADITPYLSVLMTSLF----NAFKF----PE---SE----ENQYIMKCIMRVLG-VAEISNEVAA 599 (975)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~----~ll~~----~~---~~----~~~~l~~~l~~vi~-~~~~i~p~~~ 599 (975)
.++.... ..+...+++..++.-+. .++.. .+ .. ....+++++.+++. +++.+.|++.
T Consensus 615 ~ii~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~ 687 (1049)
T 3m1i_C 615 IIISEER-------SVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLG 687 (1049)
T ss_dssp HHHHTCC-------SHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHHcCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 7665421 12345666666554443 32211 11 01 11245677778888 8999999987
Q ss_pred HHHHHHHHHHHHHHhC-------CCC-----Cch--hHHHHHHHHHHHHHhhhcCcchHHHHHHhhHH-HHHHHHh---c
Q 002048 600 PCISGLTSILNEVCKN-------PKS-----PIF--NHYLFESVAVLVRRACQRDPSLISAFEASILP-SLQIILQ---N 661 (975)
Q Consensus 600 ~l~~~L~~~l~~~~~~-------~~~-----~~~--~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P-~i~~il~---~ 661 (975)
.+...+..++...+.. .+. |.. ...+...+..+++...+.. .........++| .+..++. +
T Consensus 688 ~i~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~-~~l~~~~~~~~~~~l~~ll~~~~~ 766 (1049)
T 3m1i_C 688 HIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKA-RNLDDVVKVLVEPLLNAVLEDYMN 766 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHC-SCHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHh
Confidence 7666555544332110 011 110 1122222223333321211 222222222222 2222222 1
Q ss_pred cccc-chHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCccc--c-----ccCCCccchHHHHHHHHccCccchhc-c-Cc
Q 002048 662 DVTE-FLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDS--W-----KRSSNVPALVRLLQAFLQKVPREIAQ-E-GK 731 (975)
Q Consensus 662 ~~~~-~~~~~l~ll~~ll~~~~~~~~~~~~~lf~~l~~~~l--~-----~~~~~l~~~~~~L~~~i~~~~~~~~~-~-~~ 731 (975)
.... -.++++.+++.++...+..+.+.+..+++.+....+ . +.++...+.+.++..++.+.+..|.. . ..
T Consensus 767 ~~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~ 846 (1049)
T 3m1i_C 767 NVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAA 846 (1049)
T ss_dssp SCGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHH
T ss_pred CCcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHH
Confidence 1111 126799999998887654355655566666554321 1 12346678889999999999988875 2 23
Q ss_pred hHHHHHHHHHhhcCCCCc--chHHHHHHHHHHhcch----h----hHhhhHHHHHHHHHHHhhcC
Q 002048 732 LREVLGIFNMLVLSPSTD--EQGFYVLNTIVESLEY----G----VIAQFVPHIWGVLFTRLQNK 786 (975)
Q Consensus 732 ~~~il~i~~~ll~~~~~~--~~a~~ll~~ii~~~~~----~----~~~~~l~~il~~~l~~L~~~ 786 (975)
...+++.....+.....+ ..|++.+..++.+... + .+..|...++..++..+...
T Consensus 847 ~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~l~~~ 911 (1049)
T 3m1i_C 847 FKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDS 911 (1049)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 566666666666544333 4577888888876531 1 12445566777777666654
No 26
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=98.65 E-value=0.0034 Score=78.03 Aligned_cols=349 Identities=11% Similarity=0.117 Sum_probs=192.2
Q ss_pred HhhHHHHHHHhhccCCH---------hHHHhHHHHHHHhhc-----CCCchHHHHHHHHHHHHHccccCCCccccccccc
Q 002048 489 KAGALKFFTMFRIQIPK---------IHAFQFFPDLVRFLG-----AESNVVHSYAASCIEKLLQVKDEGGKSRYNSADI 554 (975)
Q Consensus 489 r~ra~~~l~~f~~~~~~---------~~~~~~~~~l~~~L~-----~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l 554 (975)
+-.++..++.+++.+.. +.++.+++.+...++ ++++.||..++.++.++.++-. . -
T Consensus 460 ~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~--------~--~ 529 (980)
T 3ibv_A 460 IEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFD--------Y--E 529 (980)
T ss_dssp HHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGG--------T--C
T ss_pred HHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHh--------c--C
Confidence 45566777777775532 235567777777765 6789999999999999887632 1 1
Q ss_pred cchHHHHHHHHHH--hcCCCCchhhHHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHhCCCC-C-----------
Q 002048 555 TPYLSVLMTSLFN--AFKFPESEENQYIMKCIMRVLG-VAEISNEVAAPCISGLTSILNEVCKNPKS-P----------- 619 (975)
Q Consensus 555 ~p~l~~il~~L~~--ll~~~~~~~~~~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~~l~~~~~~~~~-~----------- 619 (975)
..|++++++.++. .+.............++.+++. ++..+.||+..+++.+.+++.... .|.+ .
T Consensus 530 ~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~-~~~~~~~~~~~~~~~~~ 608 (980)
T 3ibv_A 530 SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISV-SPVTDMDAPVPTLNSSI 608 (980)
T ss_dssp CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCC-CCCCC--CSSCCHHHHH
T ss_pred chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcC-CCCCcccccccchhhhc
Confidence 2578999999888 7665543345566778889989 999999999998888777553111 1211 0
Q ss_pred ---ch--hHHHHHHHHHHHHHhhhcCcchHHHHHHhhH-HHHHH---HHhcccc---c--chHHHHHHHHHHHHhcCC--
Q 002048 620 ---IF--NHYLFESVAVLVRRACQRDPSLISAFEASIL-PSLQI---ILQNDVT---E--FLPYAFQLLAQLIELNRP-- 683 (975)
Q Consensus 620 ---~~--~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~-P~i~~---il~~~~~---~--~~~~~l~ll~~ll~~~~~-- 683 (975)
.| ..+++|+++.++... +..++....+.+.++ |.+.. .++.... + -+...+..++.+.+.-+.
T Consensus 609 ~~~~~~~ql~L~eaig~li~~~-~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~ 687 (980)
T 3ibv_A 609 RNSDFNSQLYLFETVGVLISSG-NLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARG 687 (980)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC
T ss_pred ccCCchHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCccc
Confidence 12 247999999999986 323343344444444 44433 3432211 1 122333444555554221
Q ss_pred ----CCchhHHHHHHhhcCc-cccccCC-CccchHHHHHHHHccCccchhccCchHHHHHHHHHhhcCCCCc-chHHHHH
Q 002048 684 ----PLSSNYMQIFNLLLSP-DSWKRSS-NVPALVRLLQAFLQKVPREIAQEGKLREVLGIFNMLVLSPSTD-EQGFYVL 756 (975)
Q Consensus 684 ----~~~~~~~~lf~~l~~~-~l~~~~~-~l~~~~~~L~~~i~~~~~~~~~~~~~~~il~i~~~ll~~~~~~-~~a~~ll 756 (975)
++.+.+++..+.++.. ..|.... ....+..++...|..-...+. +++..++..+-...+ ..+ ...+.++
T Consensus 688 ~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~--p~lp~~i~~ll~~~~--~~e~~~fL~l~ 763 (980)
T 3ibv_A 688 SEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDML--PKVPQLISILLNSID--MNELVDVLSFI 763 (980)
T ss_dssp -CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHT--TTHHHHHHHHHHHCC--TTTHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHH--HHHHHHHHHHHhcCC--HHHHHHHHHHH
Confidence 1223444555544331 1133222 334444555555544444443 577777765553322 233 3456999
Q ss_pred HHHHHhcchh---hHhhhHHHHHHHHHHHhhcCch--------hhHHHHHHHHHHHHHHHhC-hHHHHHHHhhhcchhHH
Q 002048 757 NTIVESLEYG---VIAQFVPHIWGVLFTRLQNKRT--------VKFVKSLLIFMSLFLVKHG-PENLVNTMNAVQSGIIL 824 (975)
Q Consensus 757 ~~ii~~~~~~---~~~~~l~~il~~~l~~L~~~~~--------~~~~~~~i~~~~~~~~~~~-~~~~l~~L~~~~~~~~~ 824 (975)
+.++..+..+ .++..++.++..++..|+...+ ....|++..++..+. ..+ +..+ +.....+.+.
T Consensus 764 ~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~-~~~~~~v~---~s~~n~~~l~ 839 (980)
T 3ibv_A 764 SQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLL-NKGFGSIL---FTEENQVYFD 839 (980)
T ss_dssp HHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHH-HTTCTGGG---GSHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHH-hCCchhhh---cCCcchHHHH
Confidence 9999999654 2344555556666666665321 123444444433332 222 1111 1111112333
Q ss_pred HHHHHHhhcCcccccchhhHHHHHHHHHHHhhcC
Q 002048 825 VILEQIWIPNLKLITGAIEWKLTAVASTRLICES 858 (975)
Q Consensus 825 ~~~~~~w~~~~~~~~~~~~~K~~~lal~~Ll~~~ 858 (975)
.++.+ .+.....+......|+++.-|.++...-
T Consensus 840 ~~l~~-l~~~a~~~~d~~~~K~a~~~l~~~v~~~ 872 (980)
T 3ibv_A 840 PLINS-ILHFANLVGEPATQKSSIALVSKMVSLW 872 (980)
T ss_dssp HHHHH-HHHHC-----CHHHHHHHHHHHHHHHC-
T ss_pred HHHHH-HHHHhccCCChHHHHHHHHHHHHHHHHH
Confidence 33333 3333344678899999999999999873
No 27
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.65 E-value=6.6e-06 Score=94.24 Aligned_cols=424 Identities=12% Similarity=0.029 Sum_probs=227.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccCCChhHHhHHHHHHHHHHHhhhccccchhhh
Q 002048 101 LIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSIFKKFRYQFKTNDLL 180 (975)
Q Consensus 101 ~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i~k~~~~~~~~~~~~ 180 (975)
.++..+.++++.+|++....+..+...+.|+-|+.|+.. +.+++ .+...+..|..+|+.++++.-. .. .
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~i----l~~~~--~~~~vR~~a~~~Lk~~i~~~~~---~~--~ 73 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRV----LANPG--NSQVARVAAGLQIKNSLTSKDP---DI--K 73 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCTT--SCHHHHHHHHHHHHHHHCCSSH---HH--H
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHH----HHcCC--CChHHHHHHHHHHHHhccccch---HH--H
Confidence 355666777788999999999987765566555555544 43331 0556677788888888754210 00 0
Q ss_pred hhHHHHHHHhhHHHHHHH-HHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhcccCCCchHHHHhHHHHHHHHHHHh
Q 002048 181 LDLKYCLDNFAAPLLEIF-LKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFEDHMREWMTEFKKYL 259 (975)
Q Consensus 181 ~~l~~il~~~~~~l~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~~~lp~~~~~~~~~~~~~~~~~l 259 (975)
.+.......+-+.....+ ..+...+.+. +... ..+..++..+.+.... ...+|+ .++.+...+
T Consensus 74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~-----~~~v-~~~~~~i~~ia~~~~~--~~~w~~--------ll~~L~~~l 137 (462)
T 1ibr_B 74 AQYQQRWLAIDANARREVKNYVLQTLGTE-----TYRP-SSASQCVAGIACAEIP--VNQWPE--------LIPQLVANV 137 (462)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTTCC-----CSSS-CSHHHHHHHHHHHHGG--GTCCTT--------HHHHHHHHH
T ss_pred HHHHhhhhcCCHHHHHHHHHHHHHHhCCC-----Cchh-hHHHHHHHHHHHHhcc--ccccHH--------HHHHHHHHh
Confidence 000000011111111111 1122222221 1111 2233333222222110 012232 222233333
Q ss_pred cccCCcccCCCCcCchHHHHHHHHHHHHHHHHHHh-HHHHHhhHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHhh-c
Q 002048 260 TTNYPALESTSDGLGLVDGLRAAVCENISLYMKMN-EEEFQGYLNDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNV-S 337 (975)
Q Consensus 260 ~~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~~~-~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~fl~~~-~ 337 (975)
+.+ ..+ +..+..++.++..+.+++ ++.+.++.+.+++.+...+.... ....+...+++-+..+ .
T Consensus 138 ~~~------~~~-----~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~---~~~~vr~~a~~~l~~~~~ 203 (462)
T 1ibr_B 138 TNP------NST-----EHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEE---PSNNVKLAATNALLNSLE 203 (462)
T ss_dssp HCT------TCC-----HHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTC---CCHHHHHHHHHHHHHHTT
T ss_pred ccC------CCC-----HHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHHHH
Confidence 321 001 356778888888888776 55566777777777776664321 1245555565555543 1
Q ss_pred hhhhhhcccCCCc-h-hhHHHHhhcccCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHhhhhh---
Q 002048 338 TSVHHTLFAGEGV-I-PQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQHV--- 412 (975)
Q Consensus 338 ~~~~~~~~~~~~~-l-~~l~~~li~~~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~~~~~~~--- 412 (975)
. ....+ ... . ..++. .+ . +.. .+.....|.++...|..++..+++.+
T Consensus 204 ~--~~~~~--~~~~~~~~l~~-~l----~------------------~~~-~~~~~~vr~~~~~~l~~l~~~~~~~~~~~ 255 (462)
T 1ibr_B 204 F--TKANF--DKESERHFIMQ-VV----C------------------EAT-QCPDTRVRVAALQNLVKIMSLYYQYMETY 255 (462)
T ss_dssp T--THHHH--TSHHHHHHHHH-HH----H------------------HHT-TCSSHHHHHHHHHHHHHHHHHCGGGCTTT
T ss_pred H--HHHhh--hhhHHHHHHHH-HH----H------------------Hhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000 000 0 00111 11 0 001 12235678899999999998876532
Q ss_pred HH-HHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhh-------cC----CCccccCcccH-HHH---HHHhcccc
Q 002048 413 ME-TVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKK-------AG----STSISTDLVDV-QSF---FTSVIVPE 476 (975)
Q Consensus 413 ~~-~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~-------~~----g~~~~~~~~~~-~~~---l~~~v~p~ 476 (975)
.+ .+++++...+. ..+...+..++..++.++... .+ +.........+ ..+ +...++..
T Consensus 256 ~~~~l~~~~~~~~~------~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~ 329 (462)
T 1ibr_B 256 MGPALFAITIEAMK------SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT 329 (462)
T ss_dssp TTTTHHHHHHHHHH------CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc------CCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHH
Confidence 22 34444443333 234566677777777776542 00 00000011111 111 11222222
Q ss_pred cCCCC---CCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCcccccccc
Q 002048 477 LQSPD---VNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSAD 553 (975)
Q Consensus 477 l~~~~---~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~ 553 (975)
+...+ .+...-+|..|+.+++.....+++..+..+++.+...|++++..+|..|+.++..+.+.. ..+.
T Consensus 330 l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~--------~~~~ 401 (462)
T 1ibr_B 330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGP--------EPSQ 401 (462)
T ss_dssp TTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS--------CTTT
T ss_pred HHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCC--------cHHH
Confidence 32210 012457899999999999887777788889999999999999999999999999987642 2346
Q ss_pred ccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh-hccch--hhhHHHHHHHHHH
Q 002048 554 ITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG-VAEIS--NEVAAPCISGLTS 607 (975)
Q Consensus 554 l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~-~~~~i--~p~~~~l~~~L~~ 607 (975)
+.++++.++..++.++++...........++.++.. +++.+ .+|...+++.|..
T Consensus 402 ~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~ 458 (462)
T 1ibr_B 402 LKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 458 (462)
T ss_dssp TCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 788889999999999987654445566778888877 76665 4677767666553
No 28
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.64 E-value=7.1e-07 Score=92.47 Aligned_cols=185 Identities=12% Similarity=0.071 Sum_probs=137.5
Q ss_pred CCCchhHHHHHHHHHH-HHhhhcCCCccccCcccHHHHHHHhccccc-CCCCCCCcchhHhhHHHHHHHhhccCC-----
Q 002048 432 VANWKDKDCAIYLVVS-LATKKAGSTSISTDLVDVQSFFTSVIVPEL-QSPDVNAFPMLKAGALKFFTMFRIQIP----- 504 (975)
Q Consensus 432 ~~~w~~keaal~~ig~-ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l-~~~~~~~~~~Lr~ra~~~l~~f~~~~~----- 504 (975)
+.+|+.|.+|+..++. +..++.+-.. ...++..+ ...+.+.+ .+ .++.+|..||.+++++++.+.
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~---~~~~~~~~-~~~L~~~l~~D----~n~~v~~~A~~al~~la~~l~~~~f~ 98 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKS---TSQNYSNL-LGIYGHIIQKD----ANIQAVALAAQSVELICDKLKTPGFS 98 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCC---TTCCCHHH-HHHHHHHHHHC----SCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCcccc---CcccHHHH-HHHHHHHhccC----CCHHHHHHHHHHHHHHHHhccccccc
Confidence 5799999999999998 7654321110 01233344 34455566 44 578999999999999876543
Q ss_pred HhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 002048 505 KIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCI 584 (975)
Q Consensus 505 ~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l 584 (975)
+.+...++|.++..+.|....|+..|..|+..++...+ +....+|++.+++.|+..++...-...+..+.++
T Consensus 99 ~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~--------~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l 170 (249)
T 2qk1_A 99 KDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYD--------PLASSGRNEDMLKDILEHMKHKTPQIRMECTQLF 170 (249)
T ss_dssp HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSC--------TTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcc--------ccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 36788999999999999999999999999999988642 3334456999999999999765333455677788
Q ss_pred HHHHh-hc---cchhhhH-HHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhh
Q 002048 585 MRVLG-VA---EISNEVA-APCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRAC 637 (975)
Q Consensus 585 ~~vi~-~~---~~i~p~~-~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~ 637 (975)
.+++. .+ +.+.+|. +.++..|...+ +.+++..+....+|++++.+.++
T Consensus 171 ~~~~~~~~~~~~~l~~~l~~~iip~l~~~l-----~D~~~~VR~aA~~~l~~i~~~vG 223 (249)
T 2qk1_A 171 NASMKEEKDGYSTLQRYLKDEVVPIVIQIV-----NDTQPAIRTIGFESFAILIKIFG 223 (249)
T ss_dssp HHHHHHCCSCSHHHHHHHTTTHHHHHHHHH-----TCSSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHhC
Confidence 88887 65 4577787 77888777766 44566788899999999999983
No 29
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.46 E-value=7.4e-06 Score=93.50 Aligned_cols=110 Identities=12% Similarity=0.093 Sum_probs=81.4
Q ss_pred HHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCCCCcCCCCHHHHH-HHHHHHHHHHhcC-CHHHHHHHHHH
Q 002048 43 GLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPTLAPILDAEKD-QIKSLIVGLMLTS-TPRIQSQLSEA 120 (975)
Q Consensus 43 ~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~~~~~i~~e~K~-~Ir~~ll~~l~~~-~~~ir~qla~~ 120 (975)
...|++.+.++ +..+|..|+..|++.+.+.+.+ .+..-.+. .+-..+++.+.+. +..+|...+.+
T Consensus 22 l~~l~~~l~s~--~~~~r~~A~~~L~~l~~~~~~~-----------~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~ 88 (450)
T 2jdq_A 22 TSDMIEMIFSK--SPEQQLSATQKFRKLLSKEPNP-----------PIDEVISTPGVVARFVEFLKRKENCTLQFESAWV 88 (450)
T ss_dssp CHHHHHHHHSS--CHHHHHHHHHHHHHHHHSSSSC-----------CHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCC-----------cHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHH
Confidence 55667766553 7889999999999998876642 12222222 4556667777667 67899999999
Q ss_pred HHHHhcccCC--CC--CCchHHHHHHHhcccccCCChhHHhHHHHHHHHHHHh
Q 002048 121 LVVVGNHDFP--KH--WPTLLPELIANLKDAAQSNNYVSINGILGTANSIFKK 169 (975)
Q Consensus 121 i~~Ia~~D~P--~~--Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i~k~ 169 (975)
++.|+..+-. .. ..++++.+++.++++ ++..+..|+.+|..+...
T Consensus 89 L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~----~~~vr~~a~~~L~~l~~~ 137 (450)
T 2jdq_A 89 LTNIASGNSLQTRIVIQAGAVPIFIELLSSE----FEDVQEQAVWALGNIAGD 137 (450)
T ss_dssp HHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC----CHHHHHHHHHHHHHHccC
Confidence 9999985321 11 367999999999988 888889999999999863
No 30
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.36 E-value=3.7e-05 Score=87.60 Aligned_cols=357 Identities=11% Similarity=0.026 Sum_probs=184.0
Q ss_pred CCCCch---HHHHHHHhcccccCCChhHHhHHHHHHHHHHHhhhccccchhhhhhHHHHHH--HhhHHHHHHHHHHHHHH
Q 002048 131 KHWPTL---LPELIANLKDAAQSNNYVSINGILGTANSIFKKFRYQFKTNDLLLDLKYCLD--NFAAPLLEIFLKTAALI 205 (975)
Q Consensus 131 ~~Wp~L---l~~l~~~l~~~~~~~d~~~~~~~L~~l~~i~k~~~~~~~~~~~~~~l~~il~--~~~~~l~~l~~~~~~~~ 205 (975)
.+||+. ++.+++.++++ |+..+..|+..|..++.... +.. +..++. ...|.+..++.
T Consensus 13 ~~w~~~~~~l~~l~~~l~s~----~~~~r~~A~~~L~~l~~~~~----~~~----~~~~~~~~~~i~~L~~~L~------ 74 (450)
T 2jdq_A 13 MEMAPGGVITSDMIEMIFSK----SPEQQLSATQKFRKLLSKEP----NPP----IDEVISTPGVVARFVEFLK------ 74 (450)
T ss_dssp ---------CHHHHHHHHSS----CHHHHHHHHHHHHHHHHSSS----SCC----HHHHHTSTTHHHHHHHHHT------
T ss_pred HhhccccccHHHHHHHhcCC----CHHHHHHHHHHHHHHhcCCC----CCc----HHHHHHcCCcHHHHHHHHC------
Confidence 589988 99999999988 88888899999998875322 111 112222 23444443321
Q ss_pred hccccCCCChHHHHHHHHHHHHHHHHhhhcccCCCchHHHHhH-HHHHHHHHHHhcccCCcccCCCCcCchHHHHHHHHH
Q 002048 206 DSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFEDHM-REWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVC 284 (975)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~~~lp~~~~~~~-~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~k~~~~ 284 (975)
. +.+......+..++ ..+.. .-++.....+ ...++.+..+++.+ + ..++..++
T Consensus 75 -~----~~~~~v~~~a~~~L-------~~l~~-~~~~~~~~~~~~~~i~~L~~lL~~~-------~------~~vr~~a~ 128 (450)
T 2jdq_A 75 -R----KENCTLQFESAWVL-------TNIAS-GNSLQTRIVIQAGAVPIFIELLSSE-------F------EDVQEQAV 128 (450)
T ss_dssp -C----TTCHHHHHHHHHHH-------HHHHS-SCHHHHHHHHHTTHHHHHHHHTTCS-------C------HHHHHHHH
T ss_pred -C----CCCHHHHHHHHHHH-------HHHhc-CCHHHHHHHHhCCCHHHHHHHHcCC-------C------HHHHHHHH
Confidence 1 21333332332222 22211 1112111111 12345555555431 1 46777888
Q ss_pred HHHHHHHHHhHHHHHhhH--HHHHHHHHHHHhccCCCCcchHHHHHHHHHHHhh-chh--hhh-hcccCCCchhhHHHHh
Q 002048 285 ENISLYMKMNEEEFQGYL--NDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNV-STS--VHH-TLFAGEGVIPQICQNI 358 (975)
Q Consensus 285 ~~l~~~~~~~~~~f~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~l~fl~~~-~~~--~~~-~~~~~~~~l~~l~~~l 358 (975)
.++..+....++ ....+ ...++.+..++.. .....+...++..+..+ ... ..+ ..+ .+.++.++.
T Consensus 129 ~~L~~l~~~~~~-~~~~~~~~~~i~~L~~~l~~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~-- 199 (450)
T 2jdq_A 129 WALGNIAGDSTM-CRDYVLDCNILPPLLQLFSK----QNRLTMTRNAVWALSNLCRGKSPPPEFAKV--SPCLNVLSW-- 199 (450)
T ss_dssp HHHHHHHTTCHH-HHHHHHHTTCHHHHHHHTTS----CCCHHHHHHHHHHHHHHHCCSSSCCCGGGT--GGGHHHHHH--
T ss_pred HHHHHHccCCHH-HHHHHHHCCCHHHHHHHhcC----CCCHHHHHHHHHHHHHHhCCCCCCCCHHHH--HHHHHHHHH--
Confidence 888777654322 11111 1234444444431 12456777777777776 321 111 111 223333332
Q ss_pred hcccCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHhhhhhHH----HHHHHHHHHHHHhccCCCCC
Q 002048 359 VIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQHVME----TVSVQIQNLLTSFAANPVAN 434 (975)
Q Consensus 359 i~~~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~~~~~~~~~----~l~~~i~~~l~~~~~~~~~~ 434 (975)
.+. . + ....|..|...|..++...++.... .+++.+.+.+. +.+
T Consensus 200 ---~l~--~-------~--------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~------~~~ 247 (450)
T 2jdq_A 200 ---LLF--V-------S--------------DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM------HND 247 (450)
T ss_dssp ---HTT--C-------C--------------CHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT------CSC
T ss_pred ---HHc--c-------C--------------CHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC------CCc
Confidence 221 0 1 1235667777788877543221110 12222233332 457
Q ss_pred chhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCH---hHH-Hh
Q 002048 435 WKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPK---IHA-FQ 510 (975)
Q Consensus 435 w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~---~~~-~~ 510 (975)
|..++.|+.+++.++..........- ...+ ...+.+.+.+ +.+-+|..|+|+++.+....+. ... ..
T Consensus 248 ~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~----l~~L~~ll~~----~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ 318 (450)
T 2jdq_A 248 YKVVSPALRAVGNIVTGDDIQTQVIL-NCSA----LQSLLHLLSS----PKESIKKEACWTISNITAGNRAQIQTVIDAN 318 (450)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHH-TTTH----HHHHHHHTTC----SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHhhCChHHHHHHH-HCcc----HHHHHHHHcC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 89999999999998753210000000 0011 2233444554 4688999999999998753221 112 36
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchH-HHHHHHHHHhcCCCCchhhHHHHHHHHHHHh
Q 002048 511 FFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYL-SVLMTSLFNAFKFPESEENQYIMKCIMRVLG 589 (975)
Q Consensus 511 ~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l-~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~ 589 (975)
+++.+++.|.+++..||..|+.+|..++.... ++.....+ ..++..|+.+++..+....+..+.++..++.
T Consensus 319 ~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~--------~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 319 IFPALISILQTAEFRTRKEAAWAITNATSGGS--------AEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCC--------HHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCC--------HHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999876421 22222222 2477788888876543233344555555444
No 31
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.28 E-value=1.7e-05 Score=82.04 Aligned_cols=175 Identities=14% Similarity=0.152 Sum_probs=126.2
Q ss_pred CCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccC-CCCCCCcchhHhhHHHHHHHhhccCCH---hH
Q 002048 432 VANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQ-SPDVNAFPMLKAGALKFFTMFRIQIPK---IH 507 (975)
Q Consensus 432 ~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~-~~~~~~~~~Lr~ra~~~l~~f~~~~~~---~~ 507 (975)
+.+|+.|.+|+..++.+..... +.. ..++..+ ...+...+. + .++-+|..|+.+++.+...+.+ .+
T Consensus 26 s~~w~~R~~a~~~L~~l~~~~~-~~~----~~~~~~i-~~~L~~~l~kd----~~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 26 EKKWTLRKESLEVLEKLLTDHP-KLE----NGEYGAL-VSALKKVITKD----SNVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCS-SBC----CCCCHHH-HHHHHHHHHHC----SCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred cCCHHHHHHHHHHHHHHHccCC-CCC----CCCHHHH-HHHHHHHhccC----CCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 5789999999999999876531 111 0123333 334445553 4 4788999999999998865533 67
Q ss_pred HHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHH
Q 002048 508 AFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRV 587 (975)
Q Consensus 508 ~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~v 587 (975)
...+++.++..+.|++..||..|+.||..++... .+..++..++..++.........++..+.++
T Consensus 96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~---------------~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYAST---------------SLEAQQESIVESLSNKNPSVKSETALFIARA 160 (242)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS---------------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 8899999999999999999999999999987641 1466777788887754333445667777777
Q ss_pred Hh-hcc--chhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHh
Q 002048 588 LG-VAE--ISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRA 636 (975)
Q Consensus 588 i~-~~~--~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~ 636 (975)
+. ++. ...+|.+.++..|...+ +..++..+....++++.+...+
T Consensus 161 l~~~~~~~~~~~~l~~l~p~l~~~l-----~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 161 LTRTQPTALNKKLLKLLTTSLVKTL-----NEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp HTTCCGGGCCHHHHHHHHHHHHHHH-----TSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCccHHHHHHHHHHHHHHh-----cCCChHHHHHHHHHHHHHHHHc
Confidence 76 542 34567777777776655 3445667788999999999887
No 32
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.21 E-value=0.00079 Score=79.38 Aligned_cols=134 Identities=10% Similarity=-0.007 Sum_probs=90.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhc--C--CChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCCCC
Q 002048 11 LSQCFLHTLSPSPEPRRAAERSLAEMAD--R--PNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPT 86 (975)
Q Consensus 11 l~~~L~~tls~d~~~r~~AE~~L~~~~~--~--p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~~ 86 (975)
+.++-...-|+|...|+.|=.+|-.+.. . +.+...+++.+.+ .+..+|+++.++++++.+.
T Consensus 15 ~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~s--~~~~~Krl~yl~l~~~~~~------------- 79 (591)
T 2vgl_B 15 IFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQT--DNLELKKLVYLYLMNYAKS------------- 79 (591)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCCGGGHHHHHHTTSS--SCHHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHccc-------------
Confidence 3444444456787888877777765442 2 2344455565433 4789999999999987653
Q ss_pred cCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccCCChhHHhHHHHHHHHH
Q 002048 87 LAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSI 166 (975)
Q Consensus 87 ~~~i~~e~K~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i 166 (975)
.+|.-..+-+.+...+.+++..+|.....+++.| --|+-++.+++.+.+++.+. ++.....|..++..+
T Consensus 80 ----~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i---~~~~~~~~l~~~l~~~L~d~----~~~VRk~A~~al~~i 148 (591)
T 2vgl_B 80 ----QPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCI---RVDKITEYLCEPLRKCLKDE----DPYVRKTAAVCVAKL 148 (591)
T ss_dssp ----SHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTC---CSGGGHHHHHHHHHHHSSCS----CHHHHHHHHHHHHHH
T ss_pred ----CchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHcCCC----ChHHHHHHHHHHHHH
Confidence 1233233344555555556677886555555544 45667899999999999988 999999999999999
Q ss_pred HHhh
Q 002048 167 FKKF 170 (975)
Q Consensus 167 ~k~~ 170 (975)
++..
T Consensus 149 ~~~~ 152 (591)
T 2vgl_B 149 HDIN 152 (591)
T ss_dssp HHSS
T ss_pred HhhC
Confidence 8853
No 33
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.08 E-value=0.0085 Score=70.84 Aligned_cols=145 Identities=14% Similarity=0.029 Sum_probs=74.8
Q ss_pred HhcCCChHHHHHHHHHHHHHhc--CC--ChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccC----------C--CCC
Q 002048 17 HTLSPSPEPRRAAERSLAEMAD--RP--NYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWA----------P--ASD 80 (975)
Q Consensus 17 ~tls~d~~~r~~AE~~L~~~~~--~p--~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~----------~--~~~ 80 (975)
..-++|...|+.|=.+|-.+.. .+ ......++.+.+ .+...|+++-+++.++.+.+=. . ..+
T Consensus 42 ~l~~~~~~~k~~~l~kli~~~~~G~d~~~~~~~vik~~~s--~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~ 119 (618)
T 1w63_A 42 SFREEDNTYRCRNVAKLLYMHMLGYPAHFGQLECLKLIAS--QKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHS 119 (618)
T ss_dssp HHTTTCTTTHHHHHHHHHHHHHTTCCCGGGHHHHHHHHHS--SSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCS
T ss_pred HhhCCCHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHcC--CchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCC
Confidence 3334566667766555554332 22 233344455554 3667777777776666543100 0 000
Q ss_pred CC--CCC----CcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccCCChh
Q 002048 81 RN--SGP----TLAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYV 154 (975)
Q Consensus 81 ~~--~~~----~~~~i~~e~K~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~~ 154 (975)
+. ++. -..--+++--..+-..+..++.++++.||+..+.++.+|.+. .|+.=+++++.+..++... |+.
T Consensus 120 n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~-~p~~v~~~~~~l~~lL~D~----d~~ 194 (618)
T 1w63_A 120 TQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRK-VPELMEMFLPATKNLLNEK----NHG 194 (618)
T ss_dssp SSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH-CGGGGGGGGGGTTTSTTCC----CHH
T ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-ChHHHHHHHHHHHHHhCCC----CHh
Confidence 00 000 000001222223344455555556667777777777777775 3544445566666666666 777
Q ss_pred HHhHHHHHHHHHHH
Q 002048 155 SINGILGTANSIFK 168 (975)
Q Consensus 155 ~~~~~L~~l~~i~k 168 (975)
.+.+|+.+|.++++
T Consensus 195 V~~~Al~~L~~i~~ 208 (618)
T 1w63_A 195 VLHTSVVLLTEMCE 208 (618)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777754
No 34
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.98 E-value=0.00021 Score=73.62 Aligned_cols=185 Identities=15% Similarity=0.104 Sum_probs=132.1
Q ss_pred cchhhhHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccH
Q 002048 389 DVDTRRRIACELLKGIATHYRQ---HVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDV 465 (975)
Q Consensus 389 d~~s~R~~A~~ll~~L~~~~~~---~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~ 465 (975)
..|..|.+|..-|..+++..++ .....++..+...+.. ..+...+.+|+.++|.++..+.. .+
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~k-----d~~~~V~~~a~~~l~~la~~l~~---------~~ 92 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITK-----DSNVVLVAMAGKCLALLAKGLAK---------RF 92 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHH-----CSCHHHHHHHHHHHHHHHHHHGG---------GG
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHHHHHhh---------hH
Confidence 3567788888888888876322 1123455556565631 34678899999999999976632 23
Q ss_pred HHHHH---HhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHcccc
Q 002048 466 QSFFT---SVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKD 542 (975)
Q Consensus 466 ~~~l~---~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~ 542 (975)
..+.. ..++..+.+ ..+.+|..|+..+..+....+ +..+++.+...|++.+..||..++..|..++....
T Consensus 93 ~~~~~~ilp~ll~~l~d----~~~~vr~~a~~aL~~~~~~~~---~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 93 SNYASACVPSLLEKFKE----KKPNVVTALREAIDAIYASTS---LEAQQESIVESLSNKNPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp HHHHHHHHHHHHHGGGC----CCHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 34332 334444554 578999999999999887654 56789999999999999999999999999776421
Q ss_pred CCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh-hccc-hhhhHHHH
Q 002048 543 EGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG-VAEI-SNEVAAPC 601 (975)
Q Consensus 543 ~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~-~~~~-i~p~~~~l 601 (975)
+...+.++++.++..|..++++..........+++..+.. ++++ +.||...+
T Consensus 166 -------~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L 219 (242)
T 2qk2_A 166 -------PTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219 (242)
T ss_dssp -------GGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTS
T ss_pred -------CCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 1235688999999999999987655555666778877777 6665 66665543
No 35
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.98 E-value=0.0007 Score=78.86 Aligned_cols=396 Identities=14% Similarity=0.119 Sum_probs=214.7
Q ss_pred CCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHhcC-CHHHHHHH
Q 002048 39 RPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPTLAPILDAEKDQIKSLIVGLMLTS-TPRIQSQL 117 (975)
Q Consensus 39 ~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~~~~~i~~e~K~~Ir~~ll~~l~~~-~~~ir~ql 117 (975)
..+....|.+.+.++ +..+|..|+..|++.+.+.=. +.+..-.+..+-..|++.+.++ +..+|...
T Consensus 85 ~~~~i~~lv~~L~s~--~~~~~~~A~~~L~~ll~~~~~-----------~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A 151 (530)
T 1wa5_B 85 LQQELPQMTQQLNSD--DMQEQLSATVKFRQILSREHR-----------PPIDVVIQAGVVPRLVEFMRENQPEMLQLEA 151 (530)
T ss_dssp --CCHHHHHHHHSCS--SHHHHHHHHHHHHHHTCCSSS-----------CSHHHHHHTTCHHHHHHTTSTTSCHHHHHHH
T ss_pred hHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCCC-----------ccHHHHHHCCCHHHHHHHhCCCCCHHHHHHH
Confidence 345677788877664 678999999999998864211 0121111122333445555454 56799999
Q ss_pred HHHHHHHhccc--CCCCC--CchHHHHHHHhcccccCCChhHHhHHHHHHHHHHHhhhccccchhhhhhHHHHHHHhhHH
Q 002048 118 SEALVVVGNHD--FPKHW--PTLLPELIANLKDAAQSNNYVSINGILGTANSIFKKFRYQFKTNDLLLDLKYCLDNFAAP 193 (975)
Q Consensus 118 a~~i~~Ia~~D--~P~~W--p~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i~k~~~~~~~~~~~~~~l~~il~~~~~~ 193 (975)
+.+++.|+..+ ....+ ++.++.+++.++++ ++.....|+.+|..++..- ++.+..+ +-....|.
T Consensus 152 ~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~----~~~vr~~A~~aL~~l~~~~------~~~~~~~--~~~~~l~~ 219 (530)
T 1wa5_B 152 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG----SVEVKEQAIWALGNVAGDS------TDYRDYV--LQCNAMEP 219 (530)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHTTC------HHHHHHH--HHTTCHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCC----CHHHHHHHHHHHHHHhCCC------ccchHHH--HHcCcHHH
Confidence 99999999853 11222 67899999999988 8888899999999998531 1111111 11234444
Q ss_pred HHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhcccCCCchHHHHhHHHHHHHHHHHhcccCCcccCCCCcC
Q 002048 194 LLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFEDHMREWMTEFKKYLTTNYPALESTSDGL 273 (975)
Q Consensus 194 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~~~lp~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 273 (975)
++.++. ..+...... ++.++..+....-|..-.......++.+..++.. .+
T Consensus 220 L~~ll~------------~~~~~v~~~-------a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~-------~d--- 270 (530)
T 1wa5_B 220 ILGLFN------------SNKPSLIRT-------ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS-------MD--- 270 (530)
T ss_dssp HHHGGG------------SCCHHHHHH-------HHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTC-------CC---
T ss_pred HHHHhc------------cCCHHHHHH-------HHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcC-------CC---
Confidence 443321 122222222 3333333332211211111222334445555442 11
Q ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHhhHH-HHHHHHHHHHhccCCCCcchHHHHHHHHHHHhh-c-hhh-hhhcccCCC
Q 002048 274 GLVDGLRAAVCENISLYMKMNEEEFQGYLN-DFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNV-S-TSV-HHTLFAGEG 349 (975)
Q Consensus 274 ~~~~~~k~~~~~~l~~~~~~~~~~f~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~fl~~~-~-~~~-~~~~~~~~~ 349 (975)
..++..++.++..+....++.....+. ..++.+..++.. ....+...++..+..+ . .+. ...++. .+
T Consensus 271 ---~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~ 341 (530)
T 1wa5_B 271 ---TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH-----ESTLVQTPALRAVGNIVTGNDLQTQVVIN-AG 341 (530)
T ss_dssp ---HHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC-----SCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TT
T ss_pred ---HHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC-----CChhhHHHHHHHHHHHHcCCHHHHHHHHH-cc
Confidence 467777888887776544433322221 334445554432 2356777777777776 2 121 112221 22
Q ss_pred chhhHHHHhhcccCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHhhhhhHH----HHHHHHHHHHH
Q 002048 350 VIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQHVME----TVSVQIQNLLT 425 (975)
Q Consensus 350 ~l~~l~~~li~~~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~~~~~~~~~----~l~~~i~~~l~ 425 (975)
.++.++. .+. . .....|..|...|..++...++.... -++..+.+.+.
T Consensus 342 ~l~~L~~-----lL~----------------------~-~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 393 (530)
T 1wa5_B 342 VLPALRL-----LLS----------------------S-PKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE 393 (530)
T ss_dssp HHHHHHH-----HTT----------------------C-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHH-----HHc----------------------C-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh
Confidence 2222221 111 1 12457888888888887543322111 12233444444
Q ss_pred HhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcc----cccCCCCCCCcchhHhhHHHHHHHhhc
Q 002048 426 SFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIV----PELQSPDVNAFPMLKAGALKFFTMFRI 501 (975)
Q Consensus 426 ~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~----p~l~~~~~~~~~~Lr~ra~~~l~~f~~ 501 (975)
..++..+..|+.+++.++....... .....++...++ ..+.+ ..+-+|..|++.++.+..
T Consensus 394 ------~~~~~v~~~a~~aL~~l~~~~~~~~------~~~~~l~~~~~l~~L~~ll~~----~~~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 394 ------VAEYKTKKEACWAISNASSGGLQRP------DIIRYLVSQGCIKPLCDLLEI----ADNRIIEVTLDALENILK 457 (530)
T ss_dssp ------HSCHHHHHHHHHHHHHHHHHTTTCT------HHHHHHHHTTCHHHHHHHTTT----CCHHHHHHHHHHHHHHHH
T ss_pred ------cCCHHHHHHHHHHHHHHHhcCCCcH------HHHHHHHHCCCHHHHHHHHhC----CCHHHHHHHHHHHHHHHH
Confidence 2467889999999999976431100 011222222222 23333 467899999999998753
Q ss_pred cCCH----------hHHH-----hHHHHHHHhhcCCCchHHHHHHHHHHHHHccc
Q 002048 502 QIPK----------IHAF-----QFFPDLVRFLGAESNVVHSYAASCIEKLLQVK 541 (975)
Q Consensus 502 ~~~~----------~~~~-----~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~ 541 (975)
..+. .... ..++.+..++++++.-|+..|..+|.+++...
T Consensus 458 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~ 512 (530)
T 1wa5_B 458 MGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEE 512 (530)
T ss_dssp HHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSC
T ss_pred hhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 2111 1111 23667777778888889999999999887654
No 36
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.95 E-value=0.00024 Score=82.81 Aligned_cols=301 Identities=12% Similarity=0.054 Sum_probs=161.2
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHH
Q 002048 391 DTRRRIACELLKGIATHYRQHVM----ETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQ 466 (975)
Q Consensus 391 ~s~R~~A~~ll~~L~~~~~~~~~----~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~ 466 (975)
...|..|...|..++...++... .-.+..+.+.+.+ .++..++.|+.+++.++....+...... .....
T Consensus 145 ~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~------~~~~vr~~A~~aL~~l~~~~~~~~~~~~-~~~~l 217 (530)
T 1wa5_B 145 EMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT------GSVEVKEQAIWALGNVAGDSTDYRDYVL-QCNAM 217 (530)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH------CCHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTCH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcC------CCHHHHHHHHHHHHHHhCCCccchHHHH-HcCcH
Confidence 44677788888888763221110 1123344444542 4678999999999999753100000000 00011
Q ss_pred HHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhcc----CCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHcccc
Q 002048 467 SFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQ----IPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKD 542 (975)
Q Consensus 467 ~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~----~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~ 542 (975)
+ .++..+.+ ..+-+|..|+|+++.+... ........+++.++..|.+++..|+..|+.+|..+.....
T Consensus 218 ~----~L~~ll~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~ 289 (530)
T 1wa5_B 218 E----PILGLFNS----NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ 289 (530)
T ss_dssp H----HHHHGGGS----CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCH
T ss_pred H----HHHHHhcc----CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCH
Confidence 1 22233333 3578899999999998743 2345567899999999999999999999999999886421
Q ss_pred CCCccccccccccchHH-HHHHHHHHhcCCCCchhhHHHHHHHHHHHh-hccchhhhH-HHHHHHHHHHHHHHHhCCCCC
Q 002048 543 EGGKSRYNSADITPYLS-VLMTSLFNAFKFPESEENQYIMKCIMRVLG-VAEISNEVA-APCISGLTSILNEVCKNPKSP 619 (975)
Q Consensus 543 ~~~~~~~~~~~l~p~l~-~il~~L~~ll~~~~~~~~~~l~~~l~~vi~-~~~~i~p~~-~~l~~~L~~~l~~~~~~~~~~ 619 (975)
+.....+. .++..|+.++...+.......+.++..+.. ..+...... ..+++.|. .+.+++ ++
T Consensus 290 ---------~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~----~lL~~~-~~ 355 (530)
T 1wa5_B 290 ---------EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALR----LLLSSP-KE 355 (530)
T ss_dssp ---------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH----HHTTCS-CH
T ss_pred ---------HHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHH----HHHcCC-CH
Confidence 11222222 456777777765432223334444444432 111111111 11233333 333333 34
Q ss_pred chhHHHHHHHHHHHHHhhhcCcchHHHH-HHhhHHHHHHHHhcccccchHHHHHHHHHHHHhcCC--CCchhHH--HHHH
Q 002048 620 IFNHYLFESVAVLVRRACQRDPSLISAF-EASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRP--PLSSNYM--QIFN 694 (975)
Q Consensus 620 ~~~~~~~e~l~~li~~~~~~~~~~~~~l-~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~~~~--~~~~~~~--~lf~ 694 (975)
........+|+.+.. .+++....+ ...++|.+..+|.....+....+...+..+...... .....+. .+++
T Consensus 356 ~vr~~A~~aL~~l~~----~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~ 431 (530)
T 1wa5_B 356 NIKKEACWTISNITA----GNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIK 431 (530)
T ss_dssp HHHHHHHHHHHHHTT----SCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHc----CCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHH
Confidence 444455555555432 233433333 356888888888766666777888888888776321 0111111 1333
Q ss_pred hhcCccccccCCCccchHHHHHHHHccCcc
Q 002048 695 LLLSPDSWKRSSNVPALVRLLQAFLQKVPR 724 (975)
Q Consensus 695 ~l~~~~l~~~~~~l~~~~~~L~~~i~~~~~ 724 (975)
.++...-..+......++..|.+++..++.
T Consensus 432 ~L~~ll~~~~~~v~~~al~aL~~l~~~~~~ 461 (530)
T 1wa5_B 432 PLCDLLEIADNRIIEVTLDALENILKMGEA 461 (530)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 333311011222445566677777666543
No 37
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=97.91 E-value=0.0012 Score=80.45 Aligned_cols=139 Identities=12% Similarity=0.063 Sum_probs=94.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHhc----------CCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCC
Q 002048 8 LQHLSQCFLHTLSPSPEPRRAAERSLAEMAD----------RPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAP 77 (975)
Q Consensus 8 ~~~l~~~L~~tls~d~~~r~~AE~~L~~~~~----------~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~ 77 (975)
...|..+|. ++|..+|..|-..|..+.. .+|....|++.+.+. .+..+|..|+-.|+|.... =.
T Consensus 152 ip~Lv~lL~---~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~-~d~~vr~~Aa~aL~~Ls~~-~~- 225 (780)
T 2z6g_A 152 IPELTKLLN---DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-NDVETARCTSGTLHNLSHH-RE- 225 (780)
T ss_dssp HHHHHHHHH---CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHTS-HH-
T ss_pred HHHHHHHHC---CCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCC-CCHHHHHHHHHHHHHHhCC-ch-
Confidence 344555554 6789999999999998875 457888999998875 3788999999999984332 00
Q ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCCCC----CCchHHHHHHHhcccccCCCh
Q 002048 78 ASDRNSGPTLAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKH----WPTLLPELIANLKDAAQSNNY 153 (975)
Q Consensus 78 ~~~~~~~~~~~~i~~e~K~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P~~----Wp~Ll~~l~~~l~~~~~~~d~ 153 (975)
....-.+..+-..|+..+.+.+..+|...+.++..|+....... =...++.+++.+.++ +.
T Consensus 226 -----------~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~----~~ 290 (780)
T 2z6g_A 226 -----------GLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT----NV 290 (780)
T ss_dssp -----------HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC----CH
T ss_pred -----------hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC----CH
Confidence 00000111223355666666667899999999999998642210 146889999999887 76
Q ss_pred hHHhHHHHHHHHHH
Q 002048 154 VSINGILGTANSIF 167 (975)
Q Consensus 154 ~~~~~~L~~l~~i~ 167 (975)
.....++.+|..++
T Consensus 291 ~v~~~a~~aL~~La 304 (780)
T 2z6g_A 291 KFLAITTDCLQILA 304 (780)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666776555
No 38
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.87 E-value=0.033 Score=65.59 Aligned_cols=69 Identities=10% Similarity=0.159 Sum_probs=54.3
Q ss_pred HHHHHHHHHHH--hcCCHHHHHHHHHHHHHHhcccCCCCCC--chHHHHHHHhcccccCCChhHHhHHHHHHHHHHHh
Q 002048 96 DQIKSLIVGLM--LTSTPRIQSQLSEALVVVGNHDFPKHWP--TLLPELIANLKDAAQSNNYVSINGILGTANSIFKK 169 (975)
Q Consensus 96 ~~Ir~~ll~~l--~~~~~~ir~qla~~i~~Ia~~D~P~~Wp--~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i~k~ 169 (975)
+.+-..+..++ .+.++.||+..+.|+.++.+.+ |+.=+ ++++.+.+++... |+..+.+|+.++.+++++
T Consensus 145 ~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~-p~~~~~~~~~~~l~~lL~d~----d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 145 EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS-PDLVPMGDWTSRVVHLLNDQ----HLGVVTAATSLITTLAQK 217 (621)
T ss_dssp HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC-GGGCCCCSCHHHHHHHTTCS----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC-hhhcCchhHHHHHHHHhCCC----CccHHHHHHHHHHHHHHh
Confidence 34445556666 4556789999999999999964 65555 7888888899877 898999999999999874
No 39
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.84 E-value=0.006 Score=70.83 Aligned_cols=343 Identities=11% Similarity=0.037 Sum_probs=187.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcccC-CC----CCCchHHHHHHHhcccccCCC-hhHHhHHHHHHHHHHHhhhcc
Q 002048 100 SLIVGLMLTSTPRIQSQLSEALVVVGNHDF-PK----HWPTLLPELIANLKDAAQSNN-YVSINGILGTANSIFKKFRYQ 173 (975)
Q Consensus 100 ~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~-P~----~Wp~Ll~~l~~~l~~~~~~~d-~~~~~~~L~~l~~i~k~~~~~ 173 (975)
..++..+.+++..+|...+.++..++..+- |. --.+.+|.|+++++++ + +.....|+.+|..++...
T Consensus 77 ~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~----~~~~v~~~A~~~L~~l~~~~--- 149 (528)
T 4b8j_A 77 PAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRE----DFPQLQFEAAWALTNIASGT--- 149 (528)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCT----TCHHHHHHHHHHHHHHHTSC---
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCC----CCHHHHHHHHHHHHHHhCCC---
Confidence 346667767777899999999999987653 21 1246899999999887 5 778888999999998631
Q ss_pred ccchhhhhhHHHHHH-HhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhcccCCCchHHHHhHH--H
Q 002048 174 FKTNDLLLDLKYCLD-NFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFEDHMR--E 250 (975)
Q Consensus 174 ~~~~~~~~~l~~il~-~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~~~lp~~~~~~~~--~ 250 (975)
.+.+.. ++. ...|.|..++ . ..+......+..++ ..+.. +-|+ ..+.+. .
T Consensus 150 ---~~~~~~---~~~~g~i~~L~~lL--------~----~~~~~v~~~a~~aL-------~~l~~-~~~~-~~~~i~~~g 202 (528)
T 4b8j_A 150 ---SENTKV---VIDHGAVPIFVKLL--------G----SSSDDVREQAVWAL-------GNVAG-DSPK-CRDLVLANG 202 (528)
T ss_dssp ---HHHHHH---HHHTTHHHHHHHHT--------T----CSCHHHHHHHHHHH-------HHHHH-TCHH-HHHHHHHTT
T ss_pred ---HHHHHH---HHhCCcHHHHHHHh--------c----CCCHHHHHHHHHHH-------HHHhC-CChh-hHHHHHHCC
Confidence 222111 111 2334444332 1 12233333333222 22211 1111 111111 1
Q ss_pred HHHHHHHHhcccCCcccCCCCcCchHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 002048 251 WMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQGYLNDFALAVWTLLGNVSQSSSRDSLAVTAI 330 (975)
Q Consensus 251 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 330 (975)
-++.+..++.. +. + ..++..++.++..+....+..-.......++.+..++.. ....+...++
T Consensus 203 ~l~~Ll~lL~~------~~-~-----~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~-----~~~~v~~~a~ 265 (528)
T 4b8j_A 203 ALLPLLAQLNE------HT-K-----LSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHS-----NDEEVLTDAC 265 (528)
T ss_dssp CHHHHHHTCCT------TC-C-----HHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTC-----CCHHHHHHHH
T ss_pred cHHHHHHHHhc------CC-C-----HHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCC-----CCHHHHHHHH
Confidence 22333344321 11 1 466777777777666432210001223344445554422 2345666666
Q ss_pred HHHHhh-ch--hhhhhcccCCCchhhHHHHhhcccCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHHHH
Q 002048 331 KFLTNV-ST--SVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATH 407 (975)
Q Consensus 331 ~fl~~~-~~--~~~~~~~~~~~~l~~l~~~li~~~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~~ 407 (975)
..+..+ .. .....++. .+.++.++.. +. +.....|..|...|..++..
T Consensus 266 ~aL~~l~~~~~~~~~~~~~-~g~v~~Lv~l-----L~-----------------------~~~~~v~~~a~~~L~nl~~~ 316 (528)
T 4b8j_A 266 WALSYLSDGTNDKIQAVIE-AGVCPRLVEL-----LL-----------------------HPSPSVLIPALRTVGNIVTG 316 (528)
T ss_dssp HHHHHHTSSCHHHHHHHHH-TTCHHHHHHH-----TT-----------------------CSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCHHHHHHHHH-cCHHHHHHHH-----Hc-----------------------CCChhHHHHHHHHHHHHHcC
Confidence 666665 21 11122221 2344444431 11 01234677788888888764
Q ss_pred hhhhhHH----HHHHHHHHHHHHhccCCCC-CchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhccc----ccC
Q 002048 408 YRQHVME----TVSVQIQNLLTSFAANPVA-NWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVP----ELQ 478 (975)
Q Consensus 408 ~~~~~~~----~l~~~i~~~l~~~~~~~~~-~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p----~l~ 478 (975)
.+..... -++..+...+. +. ++..+..|+.+++.++.... .....++...++| .+.
T Consensus 317 ~~~~~~~~~~~~~l~~L~~lL~------~~~~~~v~~~A~~~L~nl~~~~~---------~~~~~~~~~~~i~~L~~lL~ 381 (528)
T 4b8j_A 317 DDAQTQCIIDHQALPCLLSLLT------QNLKKSIKKEACWTISNITAGNK---------DQIQAVINAGIIGPLVNLLQ 381 (528)
T ss_dssp CHHHHHHHHTTTHHHHHHHHHH------SCCCHHHHHHHHHHHHHHHTSCH---------HHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHhhhHHHHHHHHc------CCCcHHHHHHHHHHHHHHHCCCH---------HHHHHHHHCCCHHHHHHHHh
Confidence 3322211 12344455554 23 67888888899999874210 0112222222222 233
Q ss_pred CCCCCCcchhHhhHHHHHHHhhccCCHhHH-----HhHHHHHHHhhcCCCchHHHHHHHHHHHHHccc
Q 002048 479 SPDVNAFPMLKAGALKFFTMFRIQIPKIHA-----FQFFPDLVRFLGAESNVVHSYAASCIEKLLQVK 541 (975)
Q Consensus 479 ~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~-----~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~ 541 (975)
+ ..+-+|..|+|.++.+...-+++.. ..+++.++.+|.+++..|+..|+.+|..++...
T Consensus 382 ~----~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 382 T----AEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp H----SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred c----CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3 3678999999999998765333332 357899999999999999999999999998753
No 40
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.83 E-value=0.00029 Score=72.74 Aligned_cols=192 Identities=8% Similarity=0.019 Sum_probs=132.4
Q ss_pred chhhhHHHHHHHHH-HHHHhhhh-----hHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhc-CCCccccCc
Q 002048 390 VDTRRRIACELLKG-IATHYRQH-----VMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKA-GSTSISTDL 462 (975)
Q Consensus 390 ~~s~R~~A~~ll~~-L~~~~~~~-----~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~-~g~~~~~~~ 462 (975)
.|.-|.+|..-|.. +++..++. -...++..+...+.. ..|...+.+|+.++|.++.++. .++..
T Consensus 29 ~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~-----D~n~~v~~~A~~al~~la~~l~~~~f~~---- 99 (249)
T 2qk1_A 29 KWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQK-----DANIQAVALAAQSVELICDKLKTPGFSK---- 99 (249)
T ss_dssp SHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHH-----CSCHHHHHHHHHHHHHHHHHHCTTTSCH----
T ss_pred CHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHHHhcccccccH----
Confidence 35556666666666 66432211 112345555566632 3567889999999999998775 44320
Q ss_pred ccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHh----HHHhHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 002048 463 VDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKI----HAFQFFPDLVRFLGAESNVVHSYAASCIEKLL 538 (975)
Q Consensus 463 ~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~----~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~ 538 (975)
..-.-+...++.-+.+ ..+-+|..+...+..|...+++. .+..+++.++..|++++..||..+..+|.+++
T Consensus 100 -~y~~~llp~ll~~l~d----kk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~ 174 (249)
T 2qk1_A 100 -DYVSLVFTPLLDRTKE----KKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASM 174 (249)
T ss_dssp -HHHHHHHHHHHHGGGC----CCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 1112223334444554 46889999998888888766431 26689999999999999999999999999988
Q ss_pred ccccCCCccccccccccchH-HHHHHHHHHhcCCCCchhhHHHHHHHHHHHh-hccc-hhhhHHHH
Q 002048 539 QVKDEGGKSRYNSADITPYL-SVLMTSLFNAFKFPESEENQYIMKCIMRVLG-VAEI-SNEVAAPC 601 (975)
Q Consensus 539 ~~~~~~~~~~~~~~~l~p~l-~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~-~~~~-i~p~~~~l 601 (975)
.... -.+..+.||+ +.++..|.+++.+......+..++++..+.. ++++ +.||.+.+
T Consensus 175 ~~~~------~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 175 KEEK------DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHCC------SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHcC------CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 7531 1125688999 9999999999988766566677788888877 7664 88887665
No 41
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.79 E-value=0.0023 Score=74.45 Aligned_cols=335 Identities=14% Similarity=0.110 Sum_probs=177.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhH-HHHHHHHHHHHhccCCCCcchHHHHHHHHHHHhh-c-hhhhhhcccCCCchhhH
Q 002048 278 GLRAAVCENISLYMKMNEEEFQGYL-NDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNV-S-TSVHHTLFAGEGVIPQI 354 (975)
Q Consensus 278 ~~k~~~~~~l~~~~~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~l~fl~~~-~-~~~~~~~~~~~~~l~~l 354 (975)
.++..++.++..+....++.-...+ ...++.+..++.. ....+...++..|..+ . .+..+..+...+.+..+
T Consensus 133 ~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~L 207 (528)
T 4b8j_A 133 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGS-----SSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPL 207 (528)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-----SCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcC-----CCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHH
Confidence 5666677777766653332111111 1244445555432 2457777788777777 2 23333333223444444
Q ss_pred HHHhhcccCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHhccCC
Q 002048 355 CQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQH---VMETVSVQIQNLLTSFAANP 431 (975)
Q Consensus 355 ~~~li~~~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~~~~~~---~~~~l~~~i~~~l~~~~~~~ 431 (975)
+.. +. .+.....|..|...|..|+...+.. ....++..+...+.
T Consensus 208 l~l-----L~----------------------~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~------ 254 (528)
T 4b8j_A 208 LAQ-----LN----------------------EHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIH------ 254 (528)
T ss_dssp HHT-----CC----------------------TTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTT------
T ss_pred HHH-----Hh----------------------cCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHC------
Confidence 431 11 0112456777888888888654322 12223333444442
Q ss_pred CCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHH----HHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCH--
Q 002048 432 VANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFF----TSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPK-- 505 (975)
Q Consensus 432 ~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l----~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~-- 505 (975)
+.++..+..++.+++.++.... .....++ ...++..+.+ +.+-+|..|+++++.....-+.
T Consensus 255 ~~~~~v~~~a~~aL~~l~~~~~---------~~~~~~~~~g~v~~Lv~lL~~----~~~~v~~~a~~~L~nl~~~~~~~~ 321 (528)
T 4b8j_A 255 SNDEEVLTDACWALSYLSDGTN---------DKIQAVIEAGVCPRLVELLLH----PSPSVLIPALRTVGNIVTGDDAQT 321 (528)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCH---------HHHHHHHHTTCHHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCH---------HHHHHHHHcCHHHHHHHHHcC----CChhHHHHHHHHHHHHHcCCHHHH
Confidence 4578889999999998874320 0011111 1233444554 4678999999999998764321
Q ss_pred -hH-HHhHHHHHHHhhcCC-CchHHHHHHHHHHHHHccccCCCccccccccccchH-HHHHHHHHHhcCCCCchhhHHHH
Q 002048 506 -IH-AFQFFPDLVRFLGAE-SNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYL-SVLMTSLFNAFKFPESEENQYIM 581 (975)
Q Consensus 506 -~~-~~~~~~~l~~~L~~~-~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l-~~il~~L~~ll~~~~~~~~~~l~ 581 (975)
.. -..+++.++.+|+++ +..|+..|+++|..+.... .+.+...+ ..++..|+.++...+........
T Consensus 322 ~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~---------~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~ 392 (528)
T 4b8j_A 322 QCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGN---------KDQIQAVINAGIIGPLVNLLQTAEFDIKKEAA 392 (528)
T ss_dssp HHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSC---------HHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCC---------HHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 11 134689999999998 9999999999999987632 11111111 13445555555443322333444
Q ss_pred HHHHHHHh-hccchhhhHH--HHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhc-------Ccc-hHHHHHH-
Q 002048 582 KCIMRVLG-VAEISNEVAA--PCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQR-------DPS-LISAFEA- 649 (975)
Q Consensus 582 ~~l~~vi~-~~~~i~p~~~--~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~-------~~~-~~~~l~~- 649 (975)
.++..+.. ...+...+.. .++..|+.++ +. .++.....+++++..+++.. +. ... ....+++
T Consensus 393 ~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL----~~-~d~~v~~~al~~L~~l~~~~-~~~~~~~~~~~~~~~~~i~~~ 466 (528)
T 4b8j_A 393 WAISNATSGGSHDQIKYLVSEGCIKPLCDLL----IC-PDIRIVTVCLEGLENILKVG-ETDKTLAAGDVNVFSQMIDEA 466 (528)
T ss_dssp HHHHHHHHHSCHHHHHHHHHTTCHHHHHHGG----GC-SCHHHHHHHHHHHHHHHHHH-HHHHHHHTCSCCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHH----cC-CCHHHHHHHHHHHHHHHHHH-HHhhhcccccccHHHHHHHHC
Confidence 45554444 2233322221 1333443333 33 34556677888888888763 21 001 1112221
Q ss_pred hhHHHHHHHHhcccccchHHHHHHHHHHH
Q 002048 650 SILPSLQIILQNDVTEFLPYAFQLLAQLI 678 (975)
Q Consensus 650 ~l~P~i~~il~~~~~~~~~~~l~ll~~ll 678 (975)
..+..+..+...+..+....+..++..+.
T Consensus 467 ~~~~~l~~L~~~~~~~v~~~a~~il~~~~ 495 (528)
T 4b8j_A 467 EGLEKIENLQSHDNNEIYEKAVKILEAYW 495 (528)
T ss_dssp THHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 22455555555555566666777776554
No 42
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.78 E-value=0.0086 Score=70.81 Aligned_cols=134 Identities=16% Similarity=0.148 Sum_probs=90.9
Q ss_pred HhhcCCCCcchhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCcccc
Q 002048 381 IRRDMEGSDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSIST 460 (975)
Q Consensus 381 v~~~~d~~d~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~ 460 (975)
+|..++..+.+.++.+-..++.-.. .|.++....++.+ ..++ +.+...|.-+|.++...+..
T Consensus 39 ir~~l~~~~~~~k~~~l~kli~~~~--~G~d~~~~~~~vi-k~~~------s~~~~~Krl~Yl~~~~~~~~--------- 100 (618)
T 1w63_A 39 IRSSFREEDNTYRCRNVAKLLYMHM--LGYPAHFGQLECL-KLIA------SQKFTDKRIGYLGAMLLLDE--------- 100 (618)
T ss_dssp HHHHHTTTCTTTHHHHHHHHHHHHH--TTCCCGGGHHHHH-HHHH------SSSHHHHHHHHHHHHHHCCC---------
T ss_pred HHHHhhCCCHHHHHHHHHHHHHHHH--cCCCCcchHHHHH-HHHc------CCchHHHHHHHHHHHHHhCC---------
Confidence 4444444444555555444444333 2444433333333 3443 46778888888776665421
Q ss_pred CcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHcc
Q 002048 461 DLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQV 540 (975)
Q Consensus 461 ~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~ 540 (975)
.-++--...+.+..++++ +++.+|+-|++++|..+. ++....+++.+..+|.|++..||-.|+.|+.++...
T Consensus 101 -~~e~~~l~in~l~kDL~~----~n~~vr~lAL~~L~~i~~---~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~ 172 (618)
T 1w63_A 101 -RQDVHLLMTNCIKNDLNH----STQFVQGLALCTLGCMGS---SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRK 172 (618)
T ss_dssp -CHHHHHHHHHHHHHHHSC----SSSHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH
T ss_pred -CcHHHHHHHHHHHHhcCC----CCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 123334556777788887 579999999999999984 478888999999999999999999999999998764
No 43
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=97.74 E-value=0.0098 Score=70.89 Aligned_cols=135 Identities=10% Similarity=0.018 Sum_probs=95.6
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCC----------ChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCC
Q 002048 8 LQHLSQCFLHTLSPSPEPRRAAERSLAEMADRP----------NYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAP 77 (975)
Q Consensus 8 ~~~l~~~L~~tls~d~~~r~~AE~~L~~~~~~p----------~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~ 77 (975)
...|..+|. ++|+.+|..|-..|.++...+ |....|++.+.+. .+..+|..|+-.|++....
T Consensus 16 i~~Lv~lL~---~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~-~~~~~~~~A~~~L~~Ls~~---- 87 (644)
T 2z6h_A 16 IPELTKLLN---DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-NDVETARCTAGTLHNLSHH---- 87 (644)
T ss_dssp HHHHHHHHT---CSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHTTS----
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcC----
Confidence 445555554 689999999999999887643 5567778887764 3778999999888865432
Q ss_pred CCCCCCCCCcCCCCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCCCC----CCchHHHHHHHhcccc
Q 002048 78 ASDRNSGPTLAPILDAEKDQ-----IKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKH----WPTLLPELIANLKDAA 148 (975)
Q Consensus 78 ~~~~~~~~~~~~i~~e~K~~-----Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P~~----Wp~Ll~~l~~~l~~~~ 148 (975)
++.|.. +-..|+..+.+++..++...+.++..++..+-+.. =.+.++.|++.++++
T Consensus 88 --------------~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~- 152 (644)
T 2z6h_A 88 --------------REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT- 152 (644)
T ss_dssp --------------HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC-
T ss_pred --------------hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC-
Confidence 112222 22356666666678899999999999998752211 157899999999988
Q ss_pred cCCChhHHhHHHHHHHHHHH
Q 002048 149 QSNNYVSINGILGTANSIFK 168 (975)
Q Consensus 149 ~~~d~~~~~~~L~~l~~i~k 168 (975)
+......++.+|..++.
T Consensus 153 ---~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 153 ---NVKFLAITTDCLQILAY 169 (644)
T ss_dssp ---CHHHHHHHHHHHHHHHT
T ss_pred ---CHHHHHHHHHHHHHHHh
Confidence 77666666777777764
No 44
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.74 E-value=0.0034 Score=74.10 Aligned_cols=147 Identities=16% Similarity=0.209 Sum_probs=102.2
Q ss_pred cchhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHH
Q 002048 389 DVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSF 468 (975)
Q Consensus 389 d~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~ 468 (975)
+.+..+.+...++.-... |.++....++.+. .++ +++...|..+|.+++.++.. .-++--.
T Consensus 51 ~~~~k~~~l~Kli~l~~~--G~d~s~~~~~vvk-l~~------s~~~~~Krl~YL~l~~~~~~----------~~e~~~L 111 (621)
T 2vgl_A 51 DGYSKKKYVCKLLFIFLL--GHDIDFGHMEAVN-LLS------SNRYTEKQIGYLFISVLVNS----------NSELIRL 111 (621)
T ss_dssp CHHHHHHHHHHHHHHHHH--SCCCCSCHHHHHH-GGG------CSCHHHHHHHHHHHHHSCCC----------CHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHc--CCCCchhHHHHHH-Hhc------CCCHHHHHHHHHHHHHHccC----------CcHHHHH
Confidence 445566666666554442 4444333333333 333 46788999999888877532 1234445
Q ss_pred HHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhh--cCCCchHHHHHHHHHHHHHccccCCCc
Q 002048 469 FTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFL--GAESNVVHSYAASCIEKLLQVKDEGGK 546 (975)
Q Consensus 469 l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L--~~~~~~V~~~Aa~aL~~~~~~~~~~~~ 546 (975)
..+.+..++++ ++|++|+-|+.+++.++. ++....+.+.+.++| .|++.-||-.|+.|+.++....
T Consensus 112 ~iN~l~kDl~~----~n~~ir~lALr~L~~i~~---~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~----- 179 (621)
T 2vgl_A 112 INNAIKNDLAS----RNPTFMGLALHCIANVGS---REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS----- 179 (621)
T ss_dssp HHHHHHHHHHS----CCHHHHHHHHHHHHHHCC---HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHhcCC----CCHHHHHHHHHHhhccCC---HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC-----
Confidence 56778888887 579999999999999975 588999999999999 8999999999999999988752
Q ss_pred cccccccccchHHHHHHHHHHhcCCC
Q 002048 547 SRYNSADITPYLSVLMTSLFNAFKFP 572 (975)
Q Consensus 547 ~~~~~~~l~p~l~~il~~L~~ll~~~ 572 (975)
++.+.+ +.+++.+..++++.
T Consensus 180 ----p~~~~~--~~~~~~l~~lL~d~ 199 (621)
T 2vgl_A 180 ----PDLVPM--GDWTSRVVHLLNDQ 199 (621)
T ss_dssp ----GGGCCC--CSCHHHHHHHTTCS
T ss_pred ----hhhcCc--hhHHHHHHHHhCCC
Confidence 233331 34556666677654
No 45
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.73 E-value=0.16 Score=60.72 Aligned_cols=217 Identities=8% Similarity=0.056 Sum_probs=117.5
Q ss_pred CCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHH----HhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHh--
Q 002048 433 ANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFT----SVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKI-- 506 (975)
Q Consensus 433 ~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~----~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~-- 506 (975)
.+-..++.|..+++.++.... +-..... ..+++.+.+ +.+-.|..|+|.+++....-+++
T Consensus 507 ~s~~vqe~Aa~aL~NLA~d~~----------~r~~Vv~~Gaip~Lv~LL~s----~~~~~k~~Aa~AL~nL~~~~~p~~~ 572 (810)
T 3now_A 507 ESHNSQELIARVLNAVCGLKE----------LRGKVVQEGGVKALLRMALE----GTEKGKRHATQALARIGITINPEVS 572 (810)
T ss_dssp CCHHHHHHHHHHHHHHHTSHH----------HHHHHHHTTHHHHHHHHHHS----SCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHH----------HHHHHHHCCCHHHHHHHHcc----CCHHHHHHHHHHHHHHhcCCChhhh
Confidence 456889999999999974210 0111111 122333444 45778999999999876433222
Q ss_pred ----HHHhHHHHHHHhhcCC-CchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHH
Q 002048 507 ----HAFQFFPDLVRFLGAE-SNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIM 581 (975)
Q Consensus 507 ----~~~~~~~~l~~~L~~~-~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~ 581 (975)
....+++.++++|++. +...+..|+.||.++....+. .....+.. ..+..|..++............
T Consensus 573 ~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~-----~~~~Ii~a---G~l~~Lv~LL~s~~~~Vq~~A~ 644 (810)
T 3now_A 573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNES-----VRQRIIKE---QGVSKIEYYLMEDHLYLTRAAA 644 (810)
T ss_dssp TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-----HHHHHHHT---THHHHHHHHHHSCCTTHHHHHH
T ss_pred hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHH-----HHHHHHHc---CCHHHHHHHHcCCCHHHHHHHH
Confidence 2345889999999865 445567899999998875310 00111111 2344455554443222223344
Q ss_pred HHHHHHHhhccchhhhH--HHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCcchHHHHH--HhhHHHHHH
Q 002048 582 KCIMRVLGVAEISNEVA--APCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFE--ASILPSLQI 657 (975)
Q Consensus 582 ~~l~~vi~~~~~i~p~~--~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~~~~~~l~--~~l~P~i~~ 657 (975)
+++..++...+....+. ...+..|+.++ .. .+........-+|+.+.. .+++....+. +..+|.+..
T Consensus 645 ~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL----~s-~d~~vq~~Aa~ALanLt~----~s~~~~~~ii~~~g~I~~Lv~ 715 (810)
T 3now_A 645 QCLCNLVMSEDVIKMFEGNNDRVKFLALLC----ED-EDEETATACAGALAIITS----VSVKCCEKILAIASWLDILHT 715 (810)
T ss_dssp HHHHHHTTSHHHHHHHHSSSSHHHHHHHGG----GC-SSHHHHHHHHHHHHHHHH----HCHHHHHHHHTSTTHHHHHHH
T ss_pred HHHHHHhCChHHHHHHHhccCcHHHHHHHh----cC-CCHHHHHHHHHHHHHHhC----CCHHHHHHHHHHcCCHHHHHH
Confidence 55554433112211111 11233333322 22 222222223334444332 1344444444 468889999
Q ss_pred HHhcccccchHHHHHHHHHHHHh
Q 002048 658 ILQNDVTEFLPYAFQLLAQLIEL 680 (975)
Q Consensus 658 il~~~~~~~~~~~l~ll~~ll~~ 680 (975)
++..+..+....+.-.+..++..
T Consensus 716 LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 716 LIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHCCCCHHHHHHHHHHHHHHHhC
Confidence 99888778888888888888764
No 46
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=97.67 E-value=0.014 Score=67.61 Aligned_cols=134 Identities=13% Similarity=0.046 Sum_probs=93.6
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHhc----------CCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCC
Q 002048 9 QHLSQCFLHTLSPSPEPRRAAERSLAEMAD----------RPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPA 78 (975)
Q Consensus 9 ~~l~~~L~~tls~d~~~r~~AE~~L~~~~~----------~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~ 78 (975)
..|..+|. ++|+.+|..|-..|..+.. .+|....|.+.+.+. .+..+|..|+-.|+|....
T Consensus 20 ~~Lv~lL~---~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~-~~~~~~~~a~~~L~~ls~~----- 90 (529)
T 1jdh_A 20 PELTKLLN---DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-NDVETARCTAGTLHNLSHH----- 90 (529)
T ss_dssp HHHHHHHT---CSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTS-----
T ss_pred HHHHHHhC---CCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcC-CCHHHHHHHHHHHHHHHcC-----
Confidence 34444443 6899999999999987764 346778888888764 3778999999999984331
Q ss_pred CCCCCCCCcCCCCHHHHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHHhcccCC-CC---CCchHHHHHHHhccccc
Q 002048 79 SDRNSGPTLAPILDAEKDQIK-----SLIVGLMLTSTPRIQSQLSEALVVVGNHDFP-KH---WPTLLPELIANLKDAAQ 149 (975)
Q Consensus 79 ~~~~~~~~~~~i~~e~K~~Ir-----~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P-~~---Wp~Ll~~l~~~l~~~~~ 149 (975)
++.|..+. ..|+..+.+++..++...+.++..++..+-. .+ =.+.++.+++.+.++
T Consensus 91 -------------~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~-- 155 (529)
T 1jdh_A 91 -------------REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-- 155 (529)
T ss_dssp -------------HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC--
T ss_pred -------------chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC--
Confidence 22333332 2556666666778999999999999987422 11 146889999999887
Q ss_pred CCChhHHhHHHHHHHHHHH
Q 002048 150 SNNYVSINGILGTANSIFK 168 (975)
Q Consensus 150 ~~d~~~~~~~L~~l~~i~k 168 (975)
+......+..+|..+..
T Consensus 156 --~~~~~~~~~~~L~~la~ 172 (529)
T 1jdh_A 156 --NVKFLAITTDCLQILAY 172 (529)
T ss_dssp --CHHHHHHHHHHHHHHHT
T ss_pred --CHHHHHHHHHHHHHHHh
Confidence 77666666667776653
No 47
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=97.58 E-value=0.033 Score=67.78 Aligned_cols=343 Identities=11% Similarity=0.052 Sum_probs=165.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccCCChhHHhHHHHHHHHHHHhhhccccchhh
Q 002048 100 SLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSIFKKFRYQFKTNDL 179 (975)
Q Consensus 100 ~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i~k~~~~~~~~~~~ 179 (975)
..+++.|.++...+|..++..+..+.+.+.+ ...++.|++++.++ |...+..|+.+|..+++.-..
T Consensus 118 ~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~---~g~ip~Lv~lL~~~----d~~vr~~A~~~L~~L~~~~~~------- 183 (780)
T 2z6g_A 118 PTNVQRLAEPSQMLKHAVVNLINYQDDAELA---TRAIPELTKLLNDE----DQVVVNKAAVMVHQLSKKEAS------- 183 (780)
T ss_dssp --------CCSCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCS----CHHHHHHHHHHHHHHHTSHHH-------
T ss_pred HHHHHHhcCccHHHHHHHHHHHHhhhHHHHH---hCCHHHHHHHHCCC----CHHHHHHHHHHHHHHhCCChh-------
Confidence 3566666666667888888888777665544 35677777777777 888888999999999864211
Q ss_pred hhhHHHHH--HHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhcccCCCchHHHHhHH--HHHHHH
Q 002048 180 LLDLKYCL--DNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFEDHMR--EWMTEF 255 (975)
Q Consensus 180 ~~~l~~il--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~~~lp~~~~~~~~--~~~~~~ 255 (975)
... ++ ....+.+..++. . +.+......+..++ +.+... ++. .+.+. .-++.+
T Consensus 184 ~~~---i~~~~~~i~~Lv~~L~-------~----~~d~~vr~~Aa~aL-------~~Ls~~--~~~-~~~i~~~g~I~~L 239 (780)
T 2z6g_A 184 RHA---IMRSPQMVSAIVRTMQ-------N----TNDVETARCTSGTL-------HNLSHH--REG-LLAIFKSGGIPAL 239 (780)
T ss_dssp HHH---HTTCHHHHHHHHHHHH-------H----CCCHHHHHHHHHHH-------HHHHTS--HHH-HHHHHHTTHHHHH
T ss_pred HHH---HHhccChHHHHHHHHc-------C----CCCHHHHHHHHHHH-------HHHhCC--chh-HHHHHHcCCHHHH
Confidence 001 11 122333333322 1 22333333333332 222211 111 11111 234455
Q ss_pred HHHhcccCCcccCCCCcCchHHHHHHHHHHHHHHHHHHhHHHHHhhH-HHHHHHHHHHHhccCCCCcchHHHHHHHHHHH
Q 002048 256 KKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQGYL-NDFALAVWTLLGNVSQSSSRDSLAVTAIKFLT 334 (975)
Q Consensus 256 ~~~l~~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~l~fl~ 334 (975)
..+++.+ + ..++..++.+|..+...+++.-.... ...+..+..++.. ...+....+..++..|.
T Consensus 240 v~lL~~~-------~------~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~--~~~~v~~~a~~aL~~La 304 (780)
T 2z6g_A 240 VNMLGSP-------V------DSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK--TNVKFLAITTDCLQILA 304 (780)
T ss_dssp HHHTTCS-------C------HHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC--CCHHHHHHHHHHHHHHH
T ss_pred HHHHcCC-------C------HHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhc--CCHHHHHHHHHHHHHHh
Confidence 5555431 1 46788888888888765432111111 1334445555433 11111223344455444
Q ss_pred hhchhhhhhcccCCCchhhHHHHhhcccCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHhhhhhHH
Q 002048 335 NVSTSVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQHVME 414 (975)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~~l~~~li~~~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~~~~~~~~~ 414 (975)
.. .+..+..+...+.+..++. ++ . ..+...++..|..++..|+... + ...
T Consensus 305 ~~-~~e~~~~i~~~~~i~~Lv~-lL----~----------------------~~~~~~~~~~a~~aL~~Ls~~~-~-~~~ 354 (780)
T 2z6g_A 305 YG-NQESKLIILASGGPQALVN-IM----R----------------------TYTYEKLLWTTSRVLKVLSVCS-S-NKP 354 (780)
T ss_dssp TT-CHHHHHHHHTTTHHHHHHH-HH----T----------------------TCCCHHHHHHHHHHHHHHHTST-T-HHH
T ss_pred cC-ChHHHHHHHHcCCHHHHHH-HH----h----------------------cCCHHHHHHHHHHHHHHhhcCh-H-HHH
Confidence 32 1222222221333444433 11 1 0112234556677777777431 1 111
Q ss_pred HHHH-HHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHH
Q 002048 415 TVSV-QIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGAL 493 (975)
Q Consensus 415 ~l~~-~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~ 493 (975)
.+.. -+...|-..-. +.+...+..++.+++.++...... ...... ...++..+.+ ..+-+|..|+
T Consensus 355 ~i~~~g~l~~Ll~lL~--~~~~~~~~~a~~~L~~L~~~~~~~-------~~~~~~-i~~Lv~lL~~----~d~~vr~~A~ 420 (780)
T 2z6g_A 355 AIVEAGGMQALGLHLT--DPSQRLVQNCLWTLRNLSDAATKQ-------EGMEGL-LGTLVQLLGS----DDINVVTCAA 420 (780)
T ss_dssp HHHHTTHHHHHGGGTT--CSCHHHHHHHHHHHHHHHTTCTTC-------SCCHHH-HHHHHHHTTC----SCHHHHHHHH
T ss_pred HHHHhchHHHHHHHHc--CCchHHHHHHHHHHHHHhccchhh-------hhhhhH-HHHHHHHHcC----CCHHHHHHHH
Confidence 1110 01111111111 234456667777777776543110 111222 2233334454 4678999999
Q ss_pred HHHHHhhccCCH--hH--HHhHHHHHHHhhcCC-Cc-hHHHHHHHHHHHHHc
Q 002048 494 KFFTMFRIQIPK--IH--AFQFFPDLVRFLGAE-SN-VVHSYAASCIEKLLQ 539 (975)
Q Consensus 494 ~~l~~f~~~~~~--~~--~~~~~~~l~~~L~~~-~~-~V~~~Aa~aL~~~~~ 539 (975)
|.++.....-+. .. -...++.++..|.++ +. .|+..|+.+|.++..
T Consensus 421 ~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 421 GILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472 (780)
T ss_dssp HHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 999998764211 11 134678888888763 33 899999999998764
No 48
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.38 E-value=0.0027 Score=73.78 Aligned_cols=296 Identities=12% Similarity=0.070 Sum_probs=151.1
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhHHH----HHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhh--------cCCCcc
Q 002048 391 DTRRRIACELLKGIATHYRQHVMET----VSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKK--------AGSTSI 458 (975)
Q Consensus 391 ~s~R~~A~~ll~~L~~~~~~~~~~~----l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~--------~~g~~~ 458 (975)
...+..|...|..++...++....+ .+..+..++. +.+...++.|+.++|.++... ..|.
T Consensus 134 ~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~------s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~-- 205 (529)
T 3tpo_A 134 SPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA------SPHAHISEQAVWALGNIAGAGSAFRDLVIKHGA-- 205 (529)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT------CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc------CCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCC--
Confidence 3456667778888876543322111 1223333333 356788999999999997432 1111
Q ss_pred ccCcccHHHHHHHhcccccCCCCCC-CcchhHhhHHHHHHHhhccC----CHhHHHhHHHHHHHhhcCCCchHHHHHHHH
Q 002048 459 STDLVDVQSFFTSVIVPELQSPDVN-AFPMLKAGALKFFTMFRIQI----PKIHAFQFFPDLVRFLGAESNVVHSYAASC 533 (975)
Q Consensus 459 ~~~~~~~~~~l~~~v~p~l~~~~~~-~~~~Lr~ra~~~l~~f~~~~----~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~a 533 (975)
+. .++..+..++.+ ...-+++.++|.++.....- .......++|.++.+|.+++..|+..||+|
T Consensus 206 ------i~-----~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~a 274 (529)
T 3tpo_A 206 ------ID-----PLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWA 274 (529)
T ss_dssp ------HH-----HHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred ------cH-----HHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHH
Confidence 11 122233332211 12345678899999876432 234567899999999999999999999999
Q ss_pred HHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccchhhhHH--HHHHHHHHHHHH
Q 002048 534 IEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLGVAEISNEVAA--PCISGLTSILNE 611 (975)
Q Consensus 534 L~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~~~~~i~p~~~--~l~~~L~~~l~~ 611 (975)
|..+....+. ....+. -..++..|..++...+.......+.++..++...+....... ..+..|. .
T Consensus 275 L~~l~~~~~~------~~~~v~--~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~----~ 342 (529)
T 3tpo_A 275 ISYLTDGPNE------RIEMVV--KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFP----S 342 (529)
T ss_dssp HHHHHSSCHH------HHHHHH--TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHH----H
T ss_pred HHHhhhhhhh------hHHHHH--hccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHH----H
Confidence 9998765310 000110 012344555566554322223344444444321222111100 0122232 2
Q ss_pred HHhCCCCCchhHHHHHHHHHHHHHhhhcCcchHHHH-HHhhHHHHHHHHhcccccchHHHHHHHHHHHHhcCCCCchhHH
Q 002048 612 VCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAF-EASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRPPLSSNYM 690 (975)
Q Consensus 612 ~~~~~~~~~~~~~~~e~l~~li~~~~~~~~~~~~~l-~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~~~~~~~~~~~ 690 (975)
+.+++ ++.....+.-+++.+. ..+++....+ ...++|.+...+.....+...++.-.+..+........-..+.
T Consensus 343 LL~~~-~~~i~~~a~~aL~nl~----~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~ 417 (529)
T 3tpo_A 343 LLTNP-KTNIQKEATWTMSNIT----AGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLV 417 (529)
T ss_dssp HTTCS-SHHHHHHHHHHHHHHH----TSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHcCC-CHHHHHHHHHHHHHHh----cccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 33333 2223333333444332 3344433333 3458899988888776677777777777776553210000111
Q ss_pred --HHHHhhcCccccccCCCccchHHHHHHHHccC
Q 002048 691 --QIFNLLLSPDSWKRSSNVPALVRLLQAFLQKV 722 (975)
Q Consensus 691 --~lf~~l~~~~l~~~~~~l~~~~~~L~~~i~~~ 722 (975)
..+++++...-..+...+..++..|.+++..+
T Consensus 418 ~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 451 (529)
T 3tpo_A 418 HCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 451 (529)
T ss_dssp HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 12333433111122235556667777766554
No 49
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.36 E-value=0.056 Score=62.15 Aligned_cols=170 Identities=14% Similarity=0.079 Sum_probs=96.9
Q ss_pred hhHHHHHHHHHHHHHhhhhhHH----HHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHH
Q 002048 393 RRRIACELLKGIATHYRQHVME----TVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSF 468 (975)
Q Consensus 393 ~R~~A~~ll~~L~~~~~~~~~~----~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~ 468 (975)
.+..|...|..|+....+.... -+...+.+++. +.+...+..++.++|.++.... ......
T Consensus 248 v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~------~~~~~v~~~al~aL~nl~~~~~---------~~~~~i 312 (510)
T 3ul1_B 248 VLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG------ATELPIVTPALRAIGNIVTGTD---------EQTQKV 312 (510)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT------CSCHHHHHHHHHHHHHHTTSCH---------HHHHHH
T ss_pred HHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhc------CCChhhhhHHHHHHHHhhcCCH---------HHHHHH
Confidence 4556666777776543221110 12233334443 4567889999999999864210 011122
Q ss_pred HHH----hcccccCCCCCCCcchhHhhHHHHHHHhhccCCH--h--HHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHcc
Q 002048 469 FTS----VIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPK--I--HAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQV 540 (975)
Q Consensus 469 l~~----~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~--~--~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~ 540 (975)
+.. .+...+.+ +.+-+|..|||.++.....-+. . .-..+++.++..|.+.+..||..|++||.++...
T Consensus 313 ~~~g~l~~L~~LL~~----~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 313 IDAGALAVFPSLLTN----PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 388 (510)
T ss_dssp HHTTGGGGCC-CTTC----SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred hhccchHHHHHHhcC----CCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 222 23333443 5678999999999998643211 1 1235789999999999999999999999998764
Q ss_pred ccCCCccccccccccch-HHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh
Q 002048 541 KDEGGKSRYNSADITPY-LSVLMTSLFNAFKFPESEENQYIMKCIMRVLG 589 (975)
Q Consensus 541 ~~~~~~~~~~~~~l~p~-l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~ 589 (975)
.+ .+.+.-. =...+..|+.+++..+..-...+++++..++.
T Consensus 389 ~~--------~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 389 GT--------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 430 (510)
T ss_dssp CC--------HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred CC--------HHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 21 1111100 02345666777766543223344445444444
No 50
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.20 E-value=0.11 Score=59.90 Aligned_cols=358 Identities=11% Similarity=0.081 Sum_probs=176.5
Q ss_pred HHHHHHHHhcccCCcccCCCCcCchHHHHHHHHHHHHHHHHHHhHHHHHhhH-HHHHHHHHHHHhccCCCCcchHHHHHH
Q 002048 251 WMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQGYL-NDFALAVWTLLGNVSQSSSRDSLAVTA 329 (975)
Q Consensus 251 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~ 329 (975)
.++.++.+|.... + ..++..++.+|..+...-++.-...+ ...++.+..++.+ ....+...+
T Consensus 120 ~ip~Lv~lL~~~~------~------~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s-----~~~~v~e~A 182 (529)
T 3tpo_A 120 LIPKFVSFLGKTD------C------SPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS-----PHAHISEQA 182 (529)
T ss_dssp HHHHHHHHHTCTT------C------HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-----SCHHHHHHH
T ss_pred CHHHHHHHHcCCC------C------HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC-----CCHHHHHHH
Confidence 4556666665421 1 35666677777766543322111111 1233444444422 245677777
Q ss_pred HHHHHhh--chhhhhhcccCCCchhhHHHHhhcccCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHHHH
Q 002048 330 IKFLTNV--STSVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATH 407 (975)
Q Consensus 330 l~fl~~~--~~~~~~~~~~~~~~l~~l~~~li~~~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~~ 407 (975)
+.-|..+ ..+.++..+...+.+..++..+ .- .+. ..........+...+..++..
T Consensus 183 ~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL-----~~--~~~----------------~~~~~~~~~~a~~~L~nl~~~ 239 (529)
T 3tpo_A 183 VWALGNIAGAGSAFRDLVIKHGAIDPLLALL-----AV--PDL----------------STLACGYLRNLTWTLSNLCRN 239 (529)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCHHHHHHTT-----CS--SCG----------------GGSCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhccCHHHHHHHHHcCCcHHHHHHH-----hc--cch----------------hHhHHHHHHHHHHHHHHHHhc
Confidence 7777776 2345555443344555554322 11 100 001122333445556666643
Q ss_pred hh-h---hhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCC
Q 002048 408 YR-Q---HVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVN 483 (975)
Q Consensus 408 ~~-~---~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~ 483 (975)
.. . .....++..+..++. +.+...+..++.+++.++....+....+. ...+.+ .++..+.+
T Consensus 240 ~~~~~~~~~~~~~lp~L~~LL~------~~~~~v~~~a~~aL~~l~~~~~~~~~~v~-~~g~i~----~Lv~lL~~---- 304 (529)
T 3tpo_A 240 KNPAPPLDAVEQILPTLVRLLH------HNDPEVLADSCWAISYLTDGPNERIEMVV-KKGVVP----QLVKLLGA---- 304 (529)
T ss_dssp CTTCCCHHHHHHHHHHHHHHTT------SSCHHHHHHHHHHHHHHHSSCHHHHHHHH-TTTCHH----HHHHHHTC----
T ss_pred ccchhhHHHHhhHHHHHHHHhc------CCcHHHHHHHHHHHHHhhhhhhhhHHHHH-hccchH----HHHHHhcC----
Confidence 21 1 112334444444443 34456667777788777643200000000 000111 22233444
Q ss_pred CcchhHhhHHHHHHHhhccCCH---h-HHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccch-H
Q 002048 484 AFPMLKAGALKFFTMFRIQIPK---I-HAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPY-L 558 (975)
Q Consensus 484 ~~~~Lr~ra~~~l~~f~~~~~~---~-~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~-l 558 (975)
..+-++..|+.+++.....-+. . .-..+++.++.+|++++..||..||++|..+..... +..... -
T Consensus 305 ~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~---------~~~~~v~~ 375 (529)
T 3tpo_A 305 TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ---------DQIQQVVN 375 (529)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCH---------HHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccH---------HHHHHHHh
Confidence 4678899999999987643211 1 123467888999999999999999999999876421 111111 1
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHHHh-hccchhhhHHH--HHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHH
Q 002048 559 SVLMTSLFNAFKFPESEENQYIMKCIMRVLG-VAEISNEVAAP--CISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRR 635 (975)
Q Consensus 559 ~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~-~~~~i~p~~~~--l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~ 635 (975)
..++..|+.++...+.........++..++. ...+-..+... ++..|+.++ + ..|+.....++++|..+++.
T Consensus 376 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL----~-~~d~~i~~~~L~aL~nil~~ 450 (529)
T 3tpo_A 376 HGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL----S-AKDTKIIQVILDAISNIFQA 450 (529)
T ss_dssp TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGG----G-CSCHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHh----c-CCCHHHHHHHHHHHHHHHHH
Confidence 1345555666655543333344445554443 22221112111 344454444 2 23556667788888888876
Q ss_pred hhhcCcc--hHHH-HHH-hhHHHHHHHHhcccccchHHHHHHHHHHH
Q 002048 636 ACQRDPS--LISA-FEA-SILPSLQIILQNDVTEFLPYAFQLLAQLI 678 (975)
Q Consensus 636 ~~~~~~~--~~~~-l~~-~l~P~i~~il~~~~~~~~~~~l~ll~~ll 678 (975)
. +..++ .+.. +++ -.+..|..+...+..+.+..++.|+....
T Consensus 451 ~-~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf 496 (529)
T 3tpo_A 451 A-EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 496 (529)
T ss_dssp H-HTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC
T ss_pred h-HhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 3 32221 1111 111 12444444444455567777888876553
No 51
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.11 E-value=0.0027 Score=73.34 Aligned_cols=304 Identities=13% Similarity=0.077 Sum_probs=148.3
Q ss_pred hhhHHHHHHHHHHHHHhhhhhHHH----HHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHH
Q 002048 392 TRRRIACELLKGIATHYRQHVMET----VSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQS 467 (975)
Q Consensus 392 s~R~~A~~ll~~L~~~~~~~~~~~----l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~ 467 (975)
..+..|...|..++...++....+ .+..+.++|. +++...++.|+.+++.++....+--..+....-+.
T Consensus 116 ~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~------s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~- 188 (510)
T 3ul1_B 116 PIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA------SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAID- 188 (510)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT------CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHH-
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHc------CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChH-
Confidence 456677778888875443322111 1223333343 45678999999999999743200000000000011
Q ss_pred HHHHhcccccCCCCCC-CcchhHhhHHHHHHHhhccC----CHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHcccc
Q 002048 468 FFTSVIVPELQSPDVN-AFPMLKAGALKFFTMFRIQI----PKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKD 542 (975)
Q Consensus 468 ~l~~~v~p~l~~~~~~-~~~~Lr~ra~~~l~~f~~~~----~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~ 542 (975)
.++..+.+++.+ ...-+++.++|.++.....- .-.....+++.++.+|.+++..|+..||+||..+....+
T Consensus 189 ----~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~ 264 (510)
T 3ul1_B 189 ----PLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN 264 (510)
T ss_dssp ----HHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH
T ss_pred ----HHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchh
Confidence 122233332211 12346677899999876421 234567899999999999999999999999999876431
Q ss_pred CCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccchhhhHHHHHH-HHHHHHHHHHhCCCCCch
Q 002048 543 EGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLGVAEISNEVAAPCIS-GLTSILNEVCKNPKSPIF 621 (975)
Q Consensus 543 ~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~~~~~i~p~~~~l~~-~L~~~l~~~~~~~~~~~~ 621 (975)
. ....+. -..++..|..++...+.......+.++..+....+... ..++. ...+.+..+.+++ ++..
T Consensus 265 ~------~~~~i~--~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~---~~i~~~g~l~~L~~LL~~~-~~~v 332 (510)
T 3ul1_B 265 E------RIEMVV--KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQT---QKVIDAGALAVFPSLLTNP-KTNI 332 (510)
T ss_dssp H------HHHHHH--TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHH---HHHHHTTGGGGCC-CTTCS-SHHH
T ss_pred h------hHHHHH--hcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHH---HHHhhccchHHHHHHhcCC-CHHH
Confidence 0 000110 11234555666665432222233444444332112111 11111 0011111122222 2222
Q ss_pred hHHHHHHHHHHHHHhhhcCcchHHHH-HHhhHHHHHHHHhcccccchHHHHHHHHHHHHhcCCCCchhHH--HHHHhhcC
Q 002048 622 NHYLFESVAVLVRRACQRDPSLISAF-EASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRPPLSSNYM--QIFNLLLS 698 (975)
Q Consensus 622 ~~~~~e~l~~li~~~~~~~~~~~~~l-~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~~~~~~~~~~~--~lf~~l~~ 698 (975)
.....-+++.+. ..+++....+ ...++|.+..++.....+.-.++...+..+........-..+. ..+++++.
T Consensus 333 ~~~A~~aL~nl~----a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~ 408 (510)
T 3ul1_B 333 QKEATWTMSNIT----AGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN 408 (510)
T ss_dssp HHHHHHHHHHHT----TSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHH----cCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHH
Confidence 223333333332 3334433333 3468899988888776667777777777776653210000011 12333333
Q ss_pred ccccccCCCccchHHHHHHHHccC
Q 002048 699 PDSWKRSSNVPALVRLLQAFLQKV 722 (975)
Q Consensus 699 ~~l~~~~~~l~~~~~~L~~~i~~~ 722 (975)
..-..+...+..++..|.+++..+
T Consensus 409 LL~~~d~~i~~~~L~aL~nil~~~ 432 (510)
T 3ul1_B 409 LLSAKDTKIIQVILDAISNIFQAA 432 (510)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHh
Confidence 110112235556666676666554
No 52
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.99 E-value=0.0064 Score=62.49 Aligned_cols=221 Identities=15% Similarity=0.100 Sum_probs=128.7
Q ss_pred CCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHH----HHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCH--h
Q 002048 433 ANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFF----TSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPK--I 506 (975)
Q Consensus 433 ~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l----~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~--~ 506 (975)
.+...+..|+.+++.++....+ ....+. ...++..+.+ +.+-+|..|++.++.....-+. +
T Consensus 14 ~~~~~~~~a~~~L~~l~~~~~~---------~~~~~~~~g~i~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 14 TDSETQKEAARDLAEIASGPAS---------AIKAIVDAGGVEVLVKLLTS----TDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp SCHHHHHHHHHHHHHHHTSCHH---------HHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCcH---------HHHHHHHCCCHHHHHHHHhC----CCHHHHHHHHHHHHHHHcCChHHHH
Confidence 4467788888888888643210 011111 2233444555 4688999999999998754211 1
Q ss_pred H--HHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 002048 507 H--AFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCI 584 (975)
Q Consensus 507 ~--~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l 584 (975)
. -..+++.++..|++++..||..|+.+|..+....+. ....+. -...+..|+.++...+.......+.++
T Consensus 81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~------~~~~~~--~~~~i~~L~~~l~~~~~~~~~~a~~~L 152 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE------AIKAIV--DAGGVEVLVKLLTSTDSEVQKEAARAL 152 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHH------HHHHHH--HTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH------HHHHHH--HCCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 224789999999999999999999999998853210 011111 124677777787765432333444444
Q ss_pred HHHHhhccchhhhH--HHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCcchHHHH-HHhhHHHHHHHHhc
Q 002048 585 MRVLGVAEISNEVA--APCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAF-EASILPSLQIILQN 661 (975)
Q Consensus 585 ~~vi~~~~~i~p~~--~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~~~~~~l-~~~l~P~i~~il~~ 661 (975)
..+....+...... ...++.|..++ ++ .++.....+..++..+.. .+++....+ ...++|.+..+++.
T Consensus 153 ~~l~~~~~~~~~~~~~~~~i~~L~~ll----~~-~~~~v~~~a~~~L~~l~~----~~~~~~~~l~~~~~i~~L~~ll~~ 223 (252)
T 4hxt_A 153 ANIASGPDEAIKAIVDAGGVEVLVKLL----TS-TDSEVQKEAARALANIAS----GPTSAIKAIVDAGGVEVLQKLLTS 223 (252)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHT----TC-SCHHHHHHHHHHHHHHTT----SBHHHHHHHHHTTHHHHHHHGGGC
T ss_pred HHHHcCCHHHHHHHHHCcCHHHHHHHH----CC-CCHHHHHHHHHHHHHHHc----CCHHHHHHHHHCCCHHHHHHHHCC
Confidence 44433111111111 11334444333 32 344445555666555443 234433333 34578889998887
Q ss_pred ccccchHHHHHHHHHHHHhcCC
Q 002048 662 DVTEFLPYAFQLLAQLIELNRP 683 (975)
Q Consensus 662 ~~~~~~~~~l~ll~~ll~~~~~ 683 (975)
+..+....++..+..+....+.
T Consensus 224 ~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 224 TDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp SCHHHHHHHHHHHHHHHHTCBC
T ss_pred CcHHHHHHHHHHHHHHHcCCCc
Confidence 7667888999999999887654
No 53
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=96.77 E-value=0.85 Score=53.93 Aligned_cols=309 Identities=12% Similarity=0.057 Sum_probs=154.0
Q ss_pred chHHHHHHHhcccccCCChhHHhHHHHHHHHHHHhhhccccchhhhhhHHHHH--HHhhHHHHHHHHHHHHHHhccccCC
Q 002048 135 TLLPELIANLKDAAQSNNYVSINGILGTANSIFKKFRYQFKTNDLLLDLKYCL--DNFAAPLLEIFLKTAALIDSTVSSG 212 (975)
Q Consensus 135 ~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i~k~~~~~~~~~~~~~~l~~il--~~~~~~l~~l~~~~~~~~~~~~~~~ 212 (975)
..++.|+.+++++ |+..+..|+.+|..+++.-.. +.. ++ ....+.+...+ .. +
T Consensus 14 g~i~~Lv~lL~~~----~~~vr~~A~~~L~~La~~~~~-------~~~---i~~~~~~i~~Lv~~L-------~~----~ 68 (644)
T 2z6h_A 14 RAIPELTKLLNDE----DQVVVNKAAVMVHQLSKKEAS-------RHA---IMRSPQMVSAIVRTM-------QN----T 68 (644)
T ss_dssp TTHHHHHHHHTCS----CHHHHHHHHHHHHHHHTSTTH-------HHH---HTTCHHHHHHHHHHH-------HS----C
T ss_pred chHHHHHHHHcCC----CHHHHHHHHHHHHHHHCCChh-------HHH---HHhccChHHHHHHHH-------hc----C
Confidence 4688899999888 888889999999999874321 111 11 12233333322 11 2
Q ss_pred CChHHHHHHHHHHHHHHHHhhhcccCCCchHHHHhHH--HHHHHHHHHhcccCCcccCCCCcCchHHHHHHHHHHHHHHH
Q 002048 213 GPVATLKLLFESQRLCCRIFYSLNFQELPEFFEDHMR--EWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLY 290 (975)
Q Consensus 213 ~~~~~~~~~~~~l~~~lk~~~~~~~~~lp~~~~~~~~--~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~ 290 (975)
.+......+..+ ++.+... ++ ....+. .-++.+..+++.+ + ..++..++..+..+
T Consensus 69 ~~~~~~~~A~~~-------L~~Ls~~--~~-~~~~i~~~g~i~~Lv~lL~~~-------~------~~v~~~A~~aL~nL 125 (644)
T 2z6h_A 69 NDVETARCTAGT-------LHNLSHH--RE-GLLAIFKSGGIPALVKMLGSP-------V------DSVLFYAITTLHNL 125 (644)
T ss_dssp CCHHHHHHHHHH-------HHHHTTS--HH-HHHHHHTTTHHHHHHHHTTCS-------S------HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-------HHHHhcC--hh-hHHHHHHcCCHHHHHHHHhCC-------C------HHHHHHHHHHHHHH
Confidence 233333333222 2222211 11 111111 1334455554431 1 46777888888877
Q ss_pred HHHhHHHHHhhH-HHHHHHHHHHHhccCCCCcchHHHHHHHHHHHhh-c-hhhhhhcccCCCchhhHHHHhhcccCCCCh
Q 002048 291 MKMNEEEFQGYL-NDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNV-S-TSVHHTLFAGEGVIPQICQNIVIPNVRLRD 367 (975)
Q Consensus 291 ~~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~l~fl~~~-~-~~~~~~~~~~~~~l~~l~~~li~~~l~l~~ 367 (975)
....++...... ...++.+..++..- ..++...++..+..+ . .+..+..+...+.+..++.. + . .
T Consensus 126 ~~~~~~~~~~v~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~l-L----~--~ 193 (644)
T 2z6h_A 126 LLHQEGAKMAVRLAGGLQKMVALLNKT-----NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI-M----R--T 193 (644)
T ss_dssp HHHSTTHHHHHHHTTHHHHHHHGGGCC-----CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH-H----T--T
T ss_pred HhCcchhHHHHHHCCChHHHHHHHCcC-----CHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHH-H----H--c
Confidence 755432211111 23444555554331 234444444555544 1 23333322223444444432 1 1 0
Q ss_pred hhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHhhhhhHHHHHH--HHHHHHHHhccCCCCCchhHHHHHHHH
Q 002048 368 EDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQHVMETVSV--QIQNLLTSFAANPVANWKDKDCAIYLV 445 (975)
Q Consensus 368 ~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~~~~~~~~~~l~~--~i~~~l~~~~~~~~~~w~~keaal~~i 445 (975)
.+....+..|..+|..|+..- + ....+.+ .+.. +-+.-. ..+-..++.++.++
T Consensus 194 --------------------~~~~~~~~~a~~~L~nLs~~~-~-~~~~l~~~g~l~~-L~~ll~--~~~~~~~~~a~~~L 248 (644)
T 2z6h_A 194 --------------------YTYEKLLWTTSRVLKVLSVCS-S-NKPAIVEAGGMQA-LGLHLT--DPSQRLVQNCLWTL 248 (644)
T ss_dssp --------------------CCCHHHHHHHHHHHHHHTTCT-T-HHHHHHHTTHHHH-HHTTTT--CSCHHHHHHHHHHH
T ss_pred --------------------CChHHHHHHHHHHHHHHhcCc-c-cHHHHHHCCCHHH-HHHHHh--cCCHHHHHHHHHHH
Confidence 011234556677777776421 1 1111111 1111 111111 23457788888888
Q ss_pred HHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCH--hH--HHhHHHHHHHhhcC
Q 002048 446 VSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPK--IH--AFQFFPDLVRFLGA 521 (975)
Q Consensus 446 g~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~--~~--~~~~~~~l~~~L~~ 521 (975)
+.++..... . ..+... ...++..+.+ ..+-+|..|+|.++.....-+. +. -...++.++..|.+
T Consensus 249 ~nL~~~~~~-~------~~~~~~-i~~Lv~lL~~----~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~ 316 (644)
T 2z6h_A 249 RNLSDAATK-Q------EGMEGL-LGTLVQLLGS----DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 316 (644)
T ss_dssp HHHGGGCTT-C------CSCHHH-HHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHhhcchh-h------hhhhhH-HHHHHHHHcC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHc
Confidence 888754311 0 111122 2233344454 4678999999999988653211 11 12367888888876
Q ss_pred C-C-chHHHHHHHHHHHHHcc
Q 002048 522 E-S-NVVHSYAASCIEKLLQV 540 (975)
Q Consensus 522 ~-~-~~V~~~Aa~aL~~~~~~ 540 (975)
. + ..|+..|+.+|.++...
T Consensus 317 ~~~~~~v~~~a~~aL~nL~~~ 337 (644)
T 2z6h_A 317 AGDREDITEPAICALRHLTSR 337 (644)
T ss_dssp HTTCHHHHHHHHHHHHHHTSS
T ss_pred cCCcHHHHHHHHHHHHHHhcC
Confidence 3 3 68999999999998653
No 54
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.65 E-value=0.02 Score=56.94 Aligned_cols=185 Identities=15% Similarity=0.126 Sum_probs=106.4
Q ss_pred hcccccCCCCCCCcchhHhhHHHHHHHhhccCCH--hH--HHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCcc
Q 002048 472 VIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPK--IH--AFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKS 547 (975)
Q Consensus 472 ~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~--~~--~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~ 547 (975)
.+.+.+.+ +.+-+|..|+|.++.+...-+. +. -..+++.++++|++++..||..|+.+|..+....+.
T Consensus 16 ~l~~LL~s----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~---- 87 (210)
T 4db6_A 16 QMVQQLNS----PDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE---- 87 (210)
T ss_dssp HHHHHTTC----SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH----
T ss_pred HHHHHhcC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH----
Confidence 34455665 4688999999999998753221 11 225789999999999999999999999998753210
Q ss_pred ccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh-hccchhhhH-HHHHHHHHHHHHHHHhCCCCCchhHHH
Q 002048 548 RYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG-VAEISNEVA-APCISGLTSILNEVCKNPKSPIFNHYL 625 (975)
Q Consensus 548 ~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~-~~~~i~p~~-~~l~~~L~~~l~~~~~~~~~~~~~~~~ 625 (975)
....+. -...+..|+.+++..+.........++..+.. ..+...... ...++.|+.+ .+++ ++......
T Consensus 88 --~~~~i~--~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l----l~~~-~~~v~~~a 158 (210)
T 4db6_A 88 --QIQAVI--DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL----LSSP-NEQILQEA 158 (210)
T ss_dssp --HHHHHH--HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH----TTCS-CHHHHHHH
T ss_pred --HHHHHH--HCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHH----HcCC-CHHHHHHH
Confidence 011111 12356677777776543233344444444432 111111110 1133444333 3332 44445556
Q ss_pred HHHHHHHHHHhhhcCcchHHHH-HHhhHHHHHHHHhcccccchHHHHHHHHHH
Q 002048 626 FESVAVLVRRACQRDPSLISAF-EASILPSLQIILQNDVTEFLPYAFQLLAQL 677 (975)
Q Consensus 626 ~e~l~~li~~~~~~~~~~~~~l-~~~l~P~i~~il~~~~~~~~~~~l~ll~~l 677 (975)
..++..+.. .+++....+ +...+|.+..++..+..+....+...+..+
T Consensus 159 ~~aL~~l~~----~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 159 LWALSNIAS----GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp HHHHHHHHT----SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc----CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 666665543 234433333 335788888888776666677777777655
No 55
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.46 E-value=0.015 Score=59.71 Aligned_cols=183 Identities=13% Similarity=0.095 Sum_probs=103.8
Q ss_pred ccccCCCCCCCcchhHhhHHHHHHHhhccCC--HhHH--HhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCcccc
Q 002048 474 VPELQSPDVNAFPMLKAGALKFFTMFRIQIP--KIHA--FQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRY 549 (975)
Q Consensus 474 ~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~--~~~~--~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~ 549 (975)
+..+.+ +.+-+|..|++.++.....-+ .+.+ ...++.++..|++++..||..|+.+|..+....+.
T Consensus 60 ~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~------ 129 (252)
T 4db8_A 60 VQLLSS----PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE------ 129 (252)
T ss_dssp HHGGGC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH------
T ss_pred HHHHcC----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCch------
Confidence 344555 358899999999999875322 1222 23789999999999999999999999998764310
Q ss_pred ccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccchhhhH--HHHHHHHHHHHHHHHhCCCCCchhHHHHH
Q 002048 550 NSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLGVAEISNEVA--APCISGLTSILNEVCKNPKSPIFNHYLFE 627 (975)
Q Consensus 550 ~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~~~~~i~p~~--~~l~~~L~~~l~~~~~~~~~~~~~~~~~e 627 (975)
....+ .-...+..|..+++..+.......+.++..+....++..... ..+++.|+. ..+++ ++.....+..
T Consensus 130 ~~~~~--~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~----ll~~~-~~~v~~~a~~ 202 (252)
T 4db8_A 130 QIQAV--IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ----LLSSP-NEQILQEALW 202 (252)
T ss_dssp HHHHH--HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHH----GGGCS-SHHHHHHHHH
T ss_pred HHHHH--HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHH----HHCCC-CHHHHHHHHH
Confidence 00111 122467778888876533223344444444432111111110 112333333 33333 4444555566
Q ss_pred HHHHHHHHhhhcCcchHHHHH-HhhHHHHHHHHhcccccchHHHHHHHHHH
Q 002048 628 SVAVLVRRACQRDPSLISAFE-ASILPSLQIILQNDVTEFLPYAFQLLAQL 677 (975)
Q Consensus 628 ~l~~li~~~~~~~~~~~~~l~-~~l~P~i~~il~~~~~~~~~~~l~ll~~l 677 (975)
+++.+. ..+++....+. ...+|.+..++..+..+....+...+..+
T Consensus 203 ~L~~l~----~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 203 ALSNIA----SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHT----TSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred HHHHHh----cCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 666554 23444444433 34778888888766556666666666543
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.44 E-value=0.14 Score=62.31 Aligned_cols=196 Identities=13% Similarity=0.211 Sum_probs=135.6
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHH
Q 002048 390 VDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFF 469 (975)
Q Consensus 390 ~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l 469 (975)
...+|.||..-..+++...+......++..+...+.. ...|..|.+||.+++.++.... ..+
T Consensus 108 ~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~kw~~k~~~l~~~~~~~~~~~-------------~~~ 169 (986)
T 2iw3_A 108 DKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVE-----TNKWQEKIAILAAFSAMVDAAK-------------DQV 169 (986)
T ss_dssp SHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHSH-------------HHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc-----ccchHHHHHHHHHHHHHHHHhH-------------HHH
Confidence 3579999999999999998766667788877777753 3469999999999998865320 000
Q ss_pred HHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCcccc
Q 002048 470 TSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRY 549 (975)
Q Consensus 470 ~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~ 549 (975)
...+.+++|.+..++.|...-|...|..|+..+|..-
T Consensus 170 -----------------------------------~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~-------- 206 (986)
T 2iw3_A 170 -----------------------------------ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETV-------- 206 (986)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGC--------
T ss_pred -----------------------------------HHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcC--------
Confidence 0347889999999999999999999999999988763
Q ss_pred ccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh--hccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHH
Q 002048 550 NSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG--VAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFE 627 (975)
Q Consensus 550 ~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~--~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e 627 (975)
.-.++.|++|.+++.+- .++ .+-+|+-.+-. |-.++. ...+..+++++.+.....+.+ ..-..--
T Consensus 207 ~n~d~~~~~~~~~~~~~----~p~-----~~~~~~~~l~~~tfv~~v~---~~~l~~~~p~l~r~l~~~~~~-~~r~~~~ 273 (986)
T 2iw3_A 207 DNKDIERFIPSLIQCIA----DPT-----EVPETVHLLGATTFVAEVT---PATLSIMVPLLSRGLNERETG-IKRKSAV 273 (986)
T ss_dssp CCTTTGGGHHHHHHHHH----CTT-----HHHHHHHHHTTCCCCSCCC---HHHHHHHHHHHHHHHTSSSHH-HHHHHHH
T ss_pred CCcchhhhHHHHHHHhc----Chh-----hhHHHHHHhhcCeeEeeec---chhHHHHHHHHHhhhccCcch-hheeeEE
Confidence 35689999999888775 332 25566655544 333332 112345556665555332211 1112223
Q ss_pred HHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhc
Q 002048 628 SVAVLVRRACQRDPSLISAFEASILPSLQIILQN 661 (975)
Q Consensus 628 ~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~ 661 (975)
++..+.+.+ ++|.....+.+.++|-+..+.+.
T Consensus 274 ~~~n~~~lv--~~~~~~~~f~~~l~p~~~~~~~~ 305 (986)
T 2iw3_A 274 IIDNMCKLV--EDPQVIAPFLGKLLPGLKSNFAT 305 (986)
T ss_dssp HHHHHHTTC--CCHHHHHHHHTTTHHHHHHHTTT
T ss_pred EEcchhhhc--CCHHHHhhhhhhhhhHHHHHhhc
Confidence 344444444 57889999999999999988765
No 57
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.38 E-value=0.022 Score=56.59 Aligned_cols=157 Identities=14% Similarity=0.090 Sum_probs=96.4
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhHH----HHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccH
Q 002048 390 VDTRRRIACELLKGIATHYRQHVME----TVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDV 465 (975)
Q Consensus 390 ~~s~R~~A~~ll~~L~~~~~~~~~~----~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~ 465 (975)
....|..|...|..++...++.... -.++.+.+.+. +.+...++.|+.+++.++....+ ..
T Consensus 25 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~------~~~~~v~~~a~~~L~~l~~~~~~---------~~ 89 (210)
T 4db6_A 25 DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS------SPNEQILQEALWALSNIASGGNE---------QI 89 (210)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT------CSCHHHHHHHHHHHHHHTTSCHH---------HH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHc------CCCHHHHHHHHHHHHHHhcCCcH---------HH
Confidence 3557788888899998543322111 12233334443 34678899999999998742100 00
Q ss_pred HHHH----HHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHh---H-HHhHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 002048 466 QSFF----TSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKI---H-AFQFFPDLVRFLGAESNVVHSYAASCIEKL 537 (975)
Q Consensus 466 ~~~l----~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~---~-~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~ 537 (975)
..++ ...++..+.+ +.+-+|..|+|.++.....-+.. . -..+++.+++.|++++..|+..|+.+|..+
T Consensus 90 ~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165 (210)
T ss_dssp HHHHHTTCHHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcC----CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 1111 1223334554 46899999999999987532211 1 245789999999999999999999999998
Q ss_pred HccccCCCccccccccccchHHHHHHHHHHhcCCCC
Q 002048 538 LQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPE 573 (975)
Q Consensus 538 ~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~ 573 (975)
+..... ....+ .-...++.|..++...+
T Consensus 166 ~~~~~~------~~~~~--~~~g~i~~L~~ll~~~~ 193 (210)
T 4db6_A 166 ASGGNE------QKQAV--KEAGALEKLEQLQSHEN 193 (210)
T ss_dssp HTSCHH------HHHHH--HHTTHHHHHHHGGGCSC
T ss_pred HcCCcH------HHHHH--HHCCCHHHHHHHHhCCC
Confidence 875210 01111 11245667777776543
No 58
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.37 E-value=0.016 Score=59.57 Aligned_cols=133 Identities=14% Similarity=0.105 Sum_probs=82.3
Q ss_pred CCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHH----HHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCH---
Q 002048 433 ANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSF----FTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPK--- 505 (975)
Q Consensus 433 ~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~----l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~--- 505 (975)
.+...++.|+.+++.++....+ .-..+ ....++..+.+ +.+-+|..|+|.++.+...-+.
T Consensus 66 ~~~~v~~~a~~~L~~l~~~~~~---------~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~ 132 (252)
T 4db8_A 66 PNEQILQEALWALSNIASGGNE---------QIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGNEQIQ 132 (252)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHH---------HHHHHHHTTHHHHHHHGGGC----SCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCHH---------HHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHhhcCCchHHH
Confidence 4578889999999988753210 00111 11233444555 4689999999999998764321
Q ss_pred hH-HHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccch-HHHHHHHHHHhcCCCCchhhHHHHHH
Q 002048 506 IH-AFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPY-LSVLMTSLFNAFKFPESEENQYIMKC 583 (975)
Q Consensus 506 ~~-~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~-l~~il~~L~~ll~~~~~~~~~~l~~~ 583 (975)
.. -..+++.++..|++++..||..|+.+|..+....+ +..... -...+..|+.++...+....+..+.+
T Consensus 133 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~---------~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~ 203 (252)
T 4db8_A 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN---------EQIQAVIDAGALPALVQLLSSPNEQILQEALWA 203 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH---------HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh---------HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHH
Confidence 11 23488999999999999999999999999876421 111110 13456677777766532233344444
Q ss_pred HHHH
Q 002048 584 IMRV 587 (975)
Q Consensus 584 l~~v 587 (975)
+..+
T Consensus 204 L~~l 207 (252)
T 4db8_A 204 LSNI 207 (252)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 59
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.33 E-value=0.02 Score=58.60 Aligned_cols=180 Identities=13% Similarity=0.050 Sum_probs=103.5
Q ss_pred CcchhHhhHHHHHHHhhccCCH--hH--HHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHH
Q 002048 484 AFPMLKAGALKFFTMFRIQIPK--IH--AFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLS 559 (975)
Q Consensus 484 ~~~~Lr~ra~~~l~~f~~~~~~--~~--~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~ 559 (975)
+.+-+|..|++.++.+...-++ .. -..+++.+++.|++++..||..|+.+|..+...... ....+. -.
T Consensus 14 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~------~~~~~~--~~ 85 (252)
T 4hxt_A 14 TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE------AIKAIV--DA 85 (252)
T ss_dssp SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH------HHHHHH--HT
T ss_pred CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH------HHHHHH--HC
Confidence 3588999999999998764321 11 125889999999999999999999999998764210 011111 11
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccchhhhH--HHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhh
Q 002048 560 VLMTSLFNAFKFPESEENQYIMKCIMRVLGVAEISNEVA--APCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRAC 637 (975)
Q Consensus 560 ~il~~L~~ll~~~~~~~~~~l~~~l~~vi~~~~~i~p~~--~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~ 637 (975)
..+..|+.+++..+.........++..+....++..... ...++.|.. ..++ .++........+++.+..
T Consensus 86 ~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~----~l~~-~~~~~~~~a~~~L~~l~~--- 157 (252)
T 4hxt_A 86 GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVK----LLTS-TDSEVQKEAARALANIAS--- 157 (252)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH----HTTC-SCHHHHHHHHHHHHHHTT---
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH----HHcC-CCHHHHHHHHHHHHHHHc---
Confidence 356677777776432223333444444432111111110 012333333 3333 334444555555555432
Q ss_pred hcCcchH-HHHHHhhHHHHHHHHhcccccchHHHHHHHHHHHHh
Q 002048 638 QRDPSLI-SAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIEL 680 (975)
Q Consensus 638 ~~~~~~~-~~l~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~ 680 (975)
.+++.. .-+....+|.+...+..+..+....++..+..+...
T Consensus 158 -~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 200 (252)
T 4hxt_A 158 -GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 200 (252)
T ss_dssp -SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred -CCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC
Confidence 233332 233456788888888876666777888888777653
No 60
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=96.19 E-value=0.059 Score=56.65 Aligned_cols=142 Identities=13% Similarity=0.146 Sum_probs=83.0
Q ss_pred ccCCCCCCCcchhHhhHHHHHHHhhccCCH--hHH--HhHHHHHHHhhcC-CCchHHHHHHHHHHHHHccccCCCccccc
Q 002048 476 ELQSPDVNAFPMLKAGALKFFTMFRIQIPK--IHA--FQFFPDLVRFLGA-ESNVVHSYAASCIEKLLQVKDEGGKSRYN 550 (975)
Q Consensus 476 ~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~--~~~--~~~~~~l~~~L~~-~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~ 550 (975)
.|.+ +++-+|..|+|++|.....-+. +.+ ...++.++.+|++ ++..||..|++||..++....
T Consensus 90 lL~s----~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~-------- 157 (296)
T 1xqr_A 90 YLEA----GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE-------- 157 (296)
T ss_dssp TTTC----SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCH--------
T ss_pred HHcC----CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCc--------
Confidence 5555 5789999999999997643221 111 2588999999985 588999999999999886531
Q ss_pred cccccchH-HHHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccchhhhHH--HHHHHHHHHHHHHHhCCCCCchhHHHHH
Q 002048 551 SADITPYL-SVLMTSLFNAFKFPESEENQYIMKCIMRVLGVAEISNEVAA--PCISGLTSILNEVCKNPKSPIFNHYLFE 627 (975)
Q Consensus 551 ~~~l~p~l-~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~~~~~i~p~~~--~l~~~L~~~l~~~~~~~~~~~~~~~~~e 627 (975)
.....+. ...+..|..+++..+.........++..+..-.++...+.. .++..|+.++ +. .++.....++.
T Consensus 158 -~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL----~~-~d~~v~~~al~ 231 (296)
T 1xqr_A 158 -AGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALV----RT-EHSPFHEHVLG 231 (296)
T ss_dssp -HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHH----TS-CCSTHHHHHHH
T ss_pred -HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHH----cC-CChhHHHHHHH
Confidence 1111111 13455555555554322233344445444331222222221 1455555544 23 35566677888
Q ss_pred HHHHHHHH
Q 002048 628 SVAVLVRR 635 (975)
Q Consensus 628 ~l~~li~~ 635 (975)
+++.++..
T Consensus 232 aL~~l~~~ 239 (296)
T 1xqr_A 232 ALCSLVTD 239 (296)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhC
Confidence 88877754
No 61
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=95.64 E-value=4.2 Score=46.36 Aligned_cols=349 Identities=10% Similarity=0.087 Sum_probs=175.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcccCCC----CCCchHHHHHHHhcccccCCChhHHhHHHHHHHHHHHhhhccc
Q 002048 99 KSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPK----HWPTLLPELIANLKDAAQSNNYVSINGILGTANSIFKKFRYQF 174 (975)
Q Consensus 99 r~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P~----~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i~k~~~~~~ 174 (975)
-..|+..+.+++..+|...+.++..++..+-.. .=++.++.+++.+.++. |+.....+..+|..+.+.
T Consensus 19 i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~---~~~~~~~a~~~L~~ls~~----- 90 (529)
T 1jdh_A 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN---DVETARCTAGTLHNLSHH----- 90 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHTTS-----
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCC---CHHHHHHHHHHHHHHHcC-----
Confidence 345566666677889999999999999765211 12468889999887542 677777888888887653
Q ss_pred cchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhcccCCCchHHHHhH--HHHH
Q 002048 175 KTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFEDHM--REWM 252 (975)
Q Consensus 175 ~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~~~lp~~~~~~~--~~~~ 252 (975)
++.+..+.. ....|.+..++ . ..+......+..++ +.+...+ ++. ...+ ...+
T Consensus 91 --~~~~~~i~~--~g~i~~L~~lL--------~----~~~~~v~~~a~~~L-------~~l~~~~-~~~-~~~i~~~g~i 145 (529)
T 1jdh_A 91 --REGLLAIFK--SGGIPALVKML--------G----SPVDSVLFYAITTL-------HNLLLHQ-EGA-KMAVRLAGGL 145 (529)
T ss_dssp --HHHHHHHHH--TTHHHHHHHHT--------T----CSCHHHHHHHHHHH-------HHHHHHC-TTH-HHHHHHHTHH
T ss_pred --chhHHHHHH--cCCHHHHHHHH--------c----CCCHHHHHHHHHHH-------HHHhcCC-cch-HHHHHHcCCH
Confidence 122111111 12333333322 1 22333333333332 2221110 011 1111 1234
Q ss_pred HHHHHHhcccCCcccCCCCcCchHHHHHHHHHHHHHHHHHHhH---HHHHhhHHHHHHHHHHHHhccCCCCcchHHHHHH
Q 002048 253 TEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNE---EEFQGYLNDFALAVWTLLGNVSQSSSRDSLAVTA 329 (975)
Q Consensus 253 ~~~~~~l~~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~~~~---~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 329 (975)
+.+..++..+ + ++++..+...+..+....+ ..+.. ...++.+..++... ..+.....+
T Consensus 146 ~~L~~ll~~~-------~------~~~~~~~~~~L~~la~~~~~~~~~i~~--~~~i~~L~~ll~~~----~~~~~~~~a 206 (529)
T 1jdh_A 146 QKMVALLNKT-------N------VKFLAITTDCLQILAYGNQESKLIILA--SGGPQALVNIMRTY----TYEKLLWTT 206 (529)
T ss_dssp HHHHHGGGCC-------C------HHHHHHHHHHHHHHHTTCHHHHHHHHH--TTHHHHHHHHHHHC----CCHHHHHHH
T ss_pred HHHHHHHhcC-------C------HHHHHHHHHHHHHHHhCCHHHHHHHHH--CCCHHHHHHHHHhC----ChHHHHHHH
Confidence 4555555431 1 4566666666665553222 11111 12234444444332 224444455
Q ss_pred HHHHHhh-chhhhhhcccCCCchhhHHHHhhcccCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHh
Q 002048 330 IKFLTNV-STSVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHY 408 (975)
Q Consensus 330 l~fl~~~-~~~~~~~~~~~~~~l~~l~~~li~~~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~~~ 408 (975)
...+..+ ..+..+..+...+.++.++ +.+. . . ....|..|...|..|+...
T Consensus 207 ~~~L~~l~~~~~~~~~~~~~g~~~~L~-----~ll~--~--------------------~-~~~~~~~a~~~L~~l~~~~ 258 (529)
T 1jdh_A 207 SRVLKVLSVCSSNKPAIVEAGGMQALG-----LHLT--D--------------------P-SQRLVQNCLWTLRNLSDAA 258 (529)
T ss_dssp HHHHHHHTTSTTHHHHHHHTTHHHHHH-----TTTT--S--------------------S-CHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCcccHHHHHHCCCHHHHH-----HHHh--C--------------------C-ChHHHHHHHHHHHHHhcCC
Confidence 5555555 2222222221122232222 2221 0 0 1234556677788887653
Q ss_pred hhh-hHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcch
Q 002048 409 RQH-VMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPM 487 (975)
Q Consensus 409 ~~~-~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~ 487 (975)
+.. ....++..+.+.+. +.+...++.+..+++.++....+...... .....+.+ +..+.+. +..+-
T Consensus 259 ~~~~~~~~~i~~L~~ll~------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~~v~~L----~~ll~~~--~~~~~ 325 (529)
T 1jdh_A 259 TKQEGMEGLLGTLVQLLG------SDDINVVTCAAGILSNLTCNNYKNKMMVC-QVGGIEAL----VRTVLRA--GDRED 325 (529)
T ss_dssp TTCSCCHHHHHHHHHHTT------CSCHHHHHHHHHHHHHHTTTCHHHHHHHH-HTTHHHHH----HHHHHHH--TTCHH
T ss_pred hhhHHHHhHHHHHHHHHc------CCCHHHHHHHHHHHHHHhcCCHHHHHHHH-HcCChHHH----HHHHHcc--CCHHH
Confidence 221 11223333334442 35678888899999988643100000000 00111112 2222221 12467
Q ss_pred hHhhHHHHHHHhhccCCH-h----H--HHhHHHHHHHhhcCCC-chHHHHHHHHHHHHHcc
Q 002048 488 LKAGALKFFTMFRIQIPK-I----H--AFQFFPDLVRFLGAES-NVVHSYAASCIEKLLQV 540 (975)
Q Consensus 488 Lr~ra~~~l~~f~~~~~~-~----~--~~~~~~~l~~~L~~~~-~~V~~~Aa~aL~~~~~~ 540 (975)
++..|++.++.....-+. + . -...++.++..|++++ ..|+..|+.+|.++...
T Consensus 326 v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~ 386 (529)
T 1jdh_A 326 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386 (529)
T ss_dssp HHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC
Confidence 899999999988654221 1 1 1246899999999876 58999999999998764
No 62
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=95.58 E-value=0.18 Score=49.95 Aligned_cols=108 Identities=15% Similarity=0.073 Sum_probs=73.7
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHH
Q 002048 390 VDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFF 469 (975)
Q Consensus 390 ~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l 469 (975)
....|..|...|..+. .....+.+.. .+. ++++..|..++.++|.+... ...+.+
T Consensus 32 ~~~vR~~A~~~L~~~~---~~~~~~~L~~----~l~------~~~~~vr~~a~~aL~~~~~~------------~~~~~L 86 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIG---DERAVEPLIK----ALK------DEDAWVRRAAADALGQIGDE------------RAVEPL 86 (211)
T ss_dssp SHHHHHHHHHHHHHHC---CGGGHHHHHH----HTT------CSCHHHHHHHHHHHHHHCCG------------GGHHHH
T ss_pred CHHHHHHHHHHHHHhC---CccHHHHHHH----HHc------CCCHHHHHHHHHHHHhhCCH------------HHHHHH
Confidence 3456777666655543 2344444433 332 35788999999999887421 112223
Q ss_pred HHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 002048 470 TSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKL 537 (975)
Q Consensus 470 ~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~ 537 (975)
...+.+ +.+.+|..|++.++.+.+. ..++.+...|.|++..||..|+.+|..+
T Consensus 87 ----~~~l~~----~~~~vr~~a~~aL~~~~~~-------~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 87 ----IKALKD----EDGWVRQSAAVALGQIGDE-------RAVEPLIKALKDEDWFVRIAAAFALGEI 139 (211)
T ss_dssp ----HHHTTC----SSHHHHHHHHHHHHHHCCG-------GGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ----HHHHcC----CCHHHHHHHHHHHHHhCcH-------HHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 233454 5789999999999998652 4678888899999999999999999875
No 63
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.50 E-value=3.7 Score=44.90 Aligned_cols=289 Identities=12% Similarity=0.136 Sum_probs=160.6
Q ss_pred CcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHH
Q 002048 484 AFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMT 563 (975)
Q Consensus 484 ~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~ 563 (975)
+.+-.|.=|+.+|.+|-..+| +.....+.+.+.+..|.+.-||..|...|-.+|. + .+++.+.+
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP-~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck------------~---~~i~kiaD 103 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFP-ELADSAINAQLDLCEDEDVSIRRQAIKELPQFAT------------G---ENLPRVAD 103 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCG-GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCC------------T---TCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhCh-hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhh------------h---hhhhhHHH
Confidence 467888899999999988876 7788899999999999999999988877776553 2 45788888
Q ss_pred HHHHhcCCCCchhhHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCcch
Q 002048 564 SLFNAFKFPESEENQYIMKCIMRVLGVAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSL 643 (975)
Q Consensus 564 ~L~~ll~~~~~~~~~~l~~~l~~vi~~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~~~ 643 (975)
.|.++|+.-+..|...+-+++++++..... ..|..++..+.. ++...+..++.-|..-+..+..+ ..
T Consensus 104 vL~QlLqtdd~~E~~~V~~sL~sllk~Dpk---------~tl~~lf~~i~~--~~e~~Rer~lkFi~~kl~~l~~~--~l 170 (507)
T 3u0r_A 104 ILTQLLQTDDSAEFNLVNNALLSIFKMDAK---------GTLGGLFSQILQ--GEDIVRERAIKFLSTKLKTLPDE--VL 170 (507)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHHHCHH---------HHHHHHHHHHHH--SCHHHHHHHHHHHHHHGGGSCTT--TS
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhcChH---------HHHHHHHHHHcc--cchHHHHHHHHHHHHHHhhcchh--hc
Confidence 888888876656777777788777652221 112222333332 23344456666665555444211 13
Q ss_pred HHHHHHhhHHHHHHHHhcccccchHHHHHHHHHHHHhcCC-CCchhHHHHHHhhcCcc-c---cc--cCCCccchHHHHH
Q 002048 644 ISAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRP-PLSSNYMQIFNLLLSPD-S---WK--RSSNVPALVRLLQ 716 (975)
Q Consensus 644 ~~~l~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~~~~-~~~~~~~~lf~~l~~~~-l---~~--~~~~l~~~~~~L~ 716 (975)
....+..+.-.+..+| + ++..+=|.++=.++...+- .-.+...++.+.+..-. + |+ +.+.+.....|+.
T Consensus 171 ~~E~E~~i~~~ikK~L-~---DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~ 246 (507)
T 3u0r_A 171 TKEVEELILTESKKVL-E---DVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTR 246 (507)
T ss_dssp CHHHHHHHHHHHHHHT-T---SCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHh-c---cccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHH
Confidence 3677888888888888 3 3333334444444444331 11233444444443310 1 11 1123333333333
Q ss_pred HHHccCccchhccCchHHHHHHH-HHhhcCCCC---c-----chHHHHHHHHHH---hcc-hhhHhhhHHHHHHHHHHHh
Q 002048 717 AFLQKVPREIAQEGKLREVLGIF-NMLVLSPST---D-----EQGFYVLNTIVE---SLE-YGVIAQFVPHIWGVLFTRL 783 (975)
Q Consensus 717 ~~i~~~~~~~~~~~~~~~il~i~-~~ll~~~~~---~-----~~a~~ll~~ii~---~~~-~~~~~~~l~~il~~~l~~L 783 (975)
. +-..|..+..-..+++.+ .+++ +.-. + ..-+++|..+.. +++ .+...+.++.|+..++..+
T Consensus 247 ~----ALP~FS~~v~StkFv~y~~~kIl-P~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ym 321 (507)
T 3u0r_A 247 Q----AVPLFSKNVHSTRFVTYFCEQVL-PNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYM 321 (507)
T ss_dssp H----HGGGCBTTBCCHHHHHHHHHHTG-GGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTTS
T ss_pred H----HHHHhccCCChHHHHHHHHHhhc-cchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHC
Confidence 3 222232222234455433 3333 2111 1 123444444444 433 2344567777777776554
Q ss_pred hcCch------------h----hHHHHHHHHHHHHHHHhChHHH
Q 002048 784 QNKRT------------V----KFVKSLLIFMSLFLVKHGPENL 811 (975)
Q Consensus 784 ~~~~~------------~----~~~~~~i~~~~~~~~~~~~~~~ 811 (975)
=..++ + .++.+++..|+.++. ..|+.+
T Consensus 322 P~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~-k~P~~l 364 (507)
T 3u0r_A 322 PLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGR-KLPDFL 364 (507)
T ss_dssp CCCC--------------CCCHHHHHHHHHHHHHHHT-TCTHHH
T ss_pred CCCcccccccccccccCcccchhHHHHHHHHHHHHhh-hChhhh
Confidence 32221 1 466777777777763 457665
No 64
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=95.16 E-value=0.18 Score=52.51 Aligned_cols=119 Identities=14% Similarity=0.036 Sum_probs=76.0
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHH
Q 002048 391 DTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFT 470 (975)
Q Consensus 391 ~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~ 470 (975)
..+|..|...|..+.. .....+.++..+.+.+.+ .+++..|.+++.++|.++..... ...-..
T Consensus 68 ~~vR~~A~~aL~~l~~--~~~~~~~l~~~L~~~~~~-----d~~~~vr~~a~~aL~~l~~~~~~----------~~~~~~ 130 (280)
T 1oyz_A 68 YIRRDIGAFILGQIKI--CKKCEDNVFNILNNMALN-----DKSACVRATAIESTAQRCKKNPI----------YSPKIV 130 (280)
T ss_dssp HHHHHHHHHHHHHSCC--CTTTHHHHHHHHHHHHHH-----CSCHHHHHHHHHHHHHHHHHCGG----------GHHHHH
T ss_pred HHHHHHHHHHHHHhcc--ccccchHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHhccCCc----------ccHHHH
Confidence 3466677666655432 122334444544432221 45788999999999988643200 011122
Q ss_pred HhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 002048 471 SVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKL 537 (975)
Q Consensus 471 ~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~ 537 (975)
..+...+.+ +.+.+|..|++.++.+.+ ...++.++..|+|++..||..|+.+|..+
T Consensus 131 ~~L~~~l~d----~~~~vR~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 131 EQSQITAFD----KSTNVRRATAFAISVIND-------KATIPLLINLLKDPNGDVRNWAAFAININ 186 (280)
T ss_dssp HHHHHHTTC----SCHHHHHHHHHHHHTC----------CCHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhC----CCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 333444555 579999999999998765 23678888999999999999999999875
No 65
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=95.15 E-value=0.28 Score=48.02 Aligned_cols=108 Identities=15% Similarity=0.081 Sum_probs=73.6
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHH
Q 002048 390 VDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFF 469 (975)
Q Consensus 390 ~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l 469 (975)
....|..|...|..+. .....+.+. +.+. ++++..|..++.++|.+... ...+.+
T Consensus 27 ~~~vr~~A~~~L~~~~---~~~~~~~L~----~~l~------~~~~~vr~~a~~~L~~~~~~------------~~~~~L 81 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIG---DERAVEPLI----KALK------DEDAWVRRAAADALGQIGDE------------RAVEPL 81 (201)
T ss_dssp CHHHHHHHHHHHHHHC---CGGGHHHHH----HHTT------CSSHHHHHHHHHHHHHHCCG------------GGHHHH
T ss_pred CHHHHHHHHHHHHhcC---ChhHHHHHH----HHHc------CCCHHHHHHHHHHHHhhCCH------------HHHHHH
Confidence 3556777776665543 224444433 3332 45788999999999877321 112222
Q ss_pred HHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 002048 470 TSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKL 537 (975)
Q Consensus 470 ~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~ 537 (975)
...+.+ +.+.+|..|++.++.+.+. ..++.+..+|.+++..||..|+.+|..+
T Consensus 82 ----~~~l~d----~~~~vr~~a~~aL~~~~~~-------~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 134 (201)
T 3ltj_A 82 ----IKALKD----EDGWVRQSAAVALGQIGDE-------RAVEPLIKALKDEDWFVRIAAAFALGEI 134 (201)
T ss_dssp ----HHHTTC----SSHHHHHHHHHHHHHHCCG-------GGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ----HHHHcC----CCHHHHHHHHHHHHHhCcH-------HHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 233454 5789999999999998652 4677888899999999999999999875
No 66
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=95.05 E-value=2 Score=40.22 Aligned_cols=175 Identities=16% Similarity=0.112 Sum_probs=98.8
Q ss_pred CcchhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhh---------------
Q 002048 388 SDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKK--------------- 452 (975)
Q Consensus 388 ~d~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~--------------- 452 (975)
+|.|+++.-|..++.++.+.+++..-|.+ .-+--++.. ++..-..-..-.++|.++..-
T Consensus 43 DDlwtV~kNAl~vi~~i~~~~~el~epl~-~kL~vm~~k-----sEaIpltqeIa~a~G~la~i~Pe~v~~vVp~lfany 116 (253)
T 2db0_A 43 DDLWTVVKNAISIIMVIAKTREDLYEPML-KKLFSLLKK-----SEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANY 116 (253)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCGGGHHHHH-HHHHHHHHH-----CCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHhHHHHHHHHHHHhHHHHHHHH-HHHHHHHhh-----cccCchHHHHHHHHhHHHHhCHHHHHhhHHHHHHHH
Confidence 46899999999999999999887654433 333333332 222222222224455443211
Q ss_pred cCCCccccCcccH--------------HHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHh
Q 002048 453 AGSTSISTDLVDV--------------QSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRF 518 (975)
Q Consensus 453 ~~g~~~~~~~~~~--------------~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~ 518 (975)
.-|-.+. .+++ -.....-+...+.+ +...=|..|+.|++..... ...+....+|-+..+
T Consensus 117 rigd~ki--kIn~~yaLeeIaranP~l~~~v~rdi~smlts----kd~~Dkl~aLnFi~alGen-~~~yv~PfLprL~aL 189 (253)
T 2db0_A 117 RIGDEKT--KINVSYALEEIAKANPMLMASIVRDFMSMLSS----KNREDKLTALNFIEAMGEN-SFKYVNPFLPRIINL 189 (253)
T ss_dssp CCCSHHH--HHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSC----SSHHHHHHHHHHHHTCCTT-THHHHGGGHHHHHGG
T ss_pred hcCCccc--eecHHHHHHHHHHhChHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHhcc-CccccCcchHHHHHH
Confidence 0010000 0111 11111222333444 2345556666666655432 246777888899999
Q ss_pred hcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh
Q 002048 519 LGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG 589 (975)
Q Consensus 519 L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~ 589 (975)
|.|.+-.||.+|..+|..+... .|-+..++..-+.-+++.++..+..+.++++++.-
T Consensus 190 L~D~deiVRaSaVEtL~~lA~~--------------npklRkii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 190 LHDGDEIVRASAVEALVHLATL--------------NDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp GGCSSHHHHHHHHHHHHHHHTS--------------CHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred HcCcchhhhHHHHHHHHHHHHc--------------CHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999888876643 34466666666666677655555556666666543
No 67
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=95.03 E-value=8.2 Score=46.13 Aligned_cols=569 Identities=11% Similarity=0.046 Sum_probs=261.1
Q ss_pred HHHHHHhcccccCCChhHHhHHHHHHHHHHHhhhccccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHH
Q 002048 138 PELIANLKDAAQSNNYVSINGILGTANSIFKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVAT 217 (975)
Q Consensus 138 ~~l~~~l~~~~~~~d~~~~~~~L~~l~~i~k~~~~~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 217 (975)
|.+++.+.+. +.....++-.+++.++..+...-+.+ .+.+=+.++...-..+-.++..+...+.+. .-....
T Consensus 95 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~ 166 (810)
T 3now_A 95 PWFMRVLDQK----HENCVSTAQFCLQTILNALSGLKNKP-DSKPDKELCTRNNREIDTLLTCLVYSITDR---TISGAA 166 (810)
T ss_dssp HHHHHHHHCC----STTHHHHHHHHHHHHHHHHHTCCSST-TCCCCHHHHHHTHHHHHHHHHHHHHHHTCT---TSCHHH
T ss_pred HHHHHHHcCC----CHHHHHHHHHHHHHHHHHHhcccccc-ccCCcHHHHhhhhhHHHHHHHHHHHHhhcc---ccChhh
Confidence 4577788877 88888899999999998775321100 001111233333334444444444444443 222222
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCchHHHHhHHHHHHHHHHHhc--ccCCcccCCCCcCchHHHHHHHHHHHHHHHHHHhH
Q 002048 218 LKLLFESQRLCCRIFYSLNFQELPEFFEDHMREWMTEFKKYLT--TNYPALESTSDGLGLVDGLRAAVCENISLYMKMNE 295 (975)
Q Consensus 218 ~~~~~~~l~~~lk~~~~~~~~~lp~~~~~~~~~~~~~~~~~l~--~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~~~~ 295 (975)
+ -.++.+++|...+-. ...|..+. |...+.++|. ...|....+.. ...-...|..+.-++.++.+...
T Consensus 167 r---~~~~~~~~~~~~~~~-~~~~~~~~-----~~~g~~~~l~v~~~~~~~~~~~~-~~~~~~~r~~~~~~l~~~~~~~~ 236 (810)
T 3now_A 167 R---DGVIELITRNVHYTA-LEWAERLV-----EIRGLCRLLDVCSELEDYKYESA-MDITGSSSTIASVCLARIYENMY 236 (810)
T ss_dssp H---HHHHHHHHHHTTCTT-TTHHHHHH-----HTTHHHHHHHHHTCCSSSCCSSC-CCCCTTHHHHHHHHHHHHHHTCC
T ss_pred H---HHHHHHHHHhCCccc-cccccchh-----hHhhHHHHHHHHhcCcccccccc-CCCChhHHHHHHHHHHHHHHHhc
Confidence 2 235666777654321 12222211 1123334333 12222100111 00112466677777888776543
Q ss_pred -----HHHHhhHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHhh-c--hhhhhhcccCCCchhhHHHHhhcccCCCCh
Q 002048 296 -----EEFQGYLNDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNV-S--TSVHHTLFAGEGVIPQICQNIVIPNVRLRD 367 (975)
Q Consensus 296 -----~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~fl~~~-~--~~~~~~~~~~~~~l~~l~~~li~~~l~l~~ 367 (975)
+.|...+..|++.-+ . ....+.. ..++..++.+ . ......+|...+.++.++..+-
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~-~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~-------- 300 (810)
T 3now_A 237 YDEAKARFTDQIDEYIKDKL------L-APDMESK-VRVTVAITALLNGPLDVGNQVVAREGILQMILAMAT-------- 300 (810)
T ss_dssp SHHHHHHHHHHHHHHHHHHH------S-SCCHHHH-HHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHH--------
T ss_pred cchhHHHHHHHHHHHHHHHh------c-cCChHhH-HHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhC--------
Confidence 445544455544422 1 1223333 5556667766 2 2334445544566666664321
Q ss_pred hhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHH
Q 002048 368 EDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATH--YRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLV 445 (975)
Q Consensus 368 ~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~~~--~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~i 445 (975)
++....+..|...+...+.. ..+.+...-.+.+...+. +.+...+.-|+.++
T Consensus 301 --------------------s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~------s~~~~vr~~Al~~L 354 (810)
T 3now_A 301 --------------------TDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYH------SKNDGIRVRALVGL 354 (810)
T ss_dssp --------------------SSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTT------CSCHHHHHHHHHHH
T ss_pred --------------------CCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHc------CCCHHHHHHHHHHH
Confidence 11122344455555555433 112222111122333332 23345566566666
Q ss_pred HHHHhhhcCCCc-cccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccC--CHhHH--HhHHHHHHHhhc
Q 002048 446 VSLATKKAGSTS-ISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQI--PKIHA--FQFFPDLVRFLG 520 (975)
Q Consensus 446 g~ia~~~~~g~~-~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~--~~~~~--~~~~~~l~~~L~ 520 (975)
..++........ ..-....+++. ...+...|.++. ..+=+|..|+|.++..+..- ..+.. ..++|.++.+|.
T Consensus 355 ~kl~s~~~~d~~~~~~~~g~i~~L-v~~l~~lL~~~~--~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~ 431 (810)
T 3now_A 355 CKLGSYGGQDAAIRPFGDGAALKL-AEACRRFLIKPG--KDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLAR 431 (810)
T ss_dssp HHHHTTTTTTTSCCSSTTTHHHHH-HHHHHHHHHCSS--CCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHhccccccCccccchhhccHHHH-HHHHHHHhcCCC--CCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhC
Confidence 666532110000 00001112222 122233344420 14568999999999876432 12223 358899999999
Q ss_pred CCCchHHHHHHHHHHHHHccccCCCc-c------cccccc--------ccchHH---------HHHHHHHHhcCCCCchh
Q 002048 521 AESNVVHSYAASCIEKLLQVKDEGGK-S------RYNSAD--------ITPYLS---------VLMTSLFNAFKFPESEE 576 (975)
Q Consensus 521 ~~~~~V~~~Aa~aL~~~~~~~~~~~~-~------~~~~~~--------l~p~l~---------~il~~L~~ll~~~~~~~ 576 (975)
+++..++..|+.+|.++....+.... + .+.... -..+.. ..+..|..+++......
T Consensus 432 s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~v 511 (810)
T 3now_A 432 GGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNS 511 (810)
T ss_dssp TTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHH
T ss_pred CCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHH
Confidence 99999999999999998874321100 0 000000 000111 35667777777654334
Q ss_pred hHHHHHHHHHHHhhccchhhhHH--HHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCcchH---HHHHHhh
Q 002048 577 NQYIMKCIMRVLGVAEISNEVAA--PCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLI---SAFEASI 651 (975)
Q Consensus 577 ~~~l~~~l~~vi~~~~~i~p~~~--~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~~~~---~~l~~~l 651 (975)
.+....++..+..-. +...... ..+..|+.++ ++ +++........+|+.+... .+|+.. ....+ .
T Consensus 512 qe~Aa~aL~NLA~d~-~~r~~Vv~~Gaip~Lv~LL----~s-~~~~~k~~Aa~AL~nL~~~---~~p~~~~~~~~~~~-a 581 (810)
T 3now_A 512 QELIARVLNAVCGLK-ELRGKVVQEGGVKALLRMA----LE-GTEKGKRHATQALARIGIT---INPEVSFSGQRSLD-V 581 (810)
T ss_dssp HHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHHH----HS-SCHHHHHHHHHHHHHHHHH---SCHHHHTTTHHHHH-T
T ss_pred HHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHH----cc-CCHHHHHHHHHHHHHHhcC---CChhhhhcchhhhc-H
Confidence 455566666554311 1111111 1234444443 22 2233334455566665544 244321 12233 6
Q ss_pred HHHHHHHHhcccccch-HHHHHHHHHHHHhcCCCCchhHH--HHHHhhcCccccccCCCccchHHHHHHHHccCcc---c
Q 002048 652 LPSLQIILQNDVTEFL-PYAFQLLAQLIELNRPPLSSNYM--QIFNLLLSPDSWKRSSNVPALVRLLQAFLQKVPR---E 725 (975)
Q Consensus 652 ~P~i~~il~~~~~~~~-~~~l~ll~~ll~~~~~~~~~~~~--~lf~~l~~~~l~~~~~~l~~~~~~L~~~i~~~~~---~ 725 (975)
+|.+-..|..+..... .+++.-++.+....+. ....+. ..+|.+.......+...-....++|.+.... ++ .
T Consensus 582 IppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~-~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~-~~~~~~ 659 (810)
T 3now_A 582 IRPLLNLLQQDCTALENFESLMALTNLASMNES-VRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS-EDVIKM 659 (810)
T ss_dssp HHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-hHHHHH
Confidence 7888888875433221 2455555555443211 111111 1233443311112233445678888887663 33 2
Q ss_pred hhccCchHHHHHHHHHhhcCCCCc--chHHHHHHHHHHhcchhhHhhhHH--HHHHHHHHHhhc
Q 002048 726 IAQEGKLREVLGIFNMLVLSPSTD--EQGFYVLNTIVESLEYGVIAQFVP--HIWGVLFTRLQN 785 (975)
Q Consensus 726 ~~~~~~~~~il~i~~~ll~~~~~~--~~a~~ll~~ii~~~~~~~~~~~l~--~il~~~l~~L~~ 785 (975)
+..+ ...+..+-+++.+...+ ..|+..+..+....+ ......+. ..+..++.-|.+
T Consensus 660 ~v~~---~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~-~~~~~ii~~~g~I~~Lv~LL~s 719 (810)
T 3now_A 660 FEGN---NDRVKFLALLCEDEDEETATACAGALAIITSVSV-KCCEKILAIASWLDILHTLIAN 719 (810)
T ss_dssp HHSS---SSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCH-HHHHHHHTSTTHHHHHHHHHTC
T ss_pred HHhc---cCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCH-HHHHHHHHHcCCHHHHHHHHCC
Confidence 2211 13455666677654332 346666666554322 22232332 344555544444
No 68
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=94.85 E-value=0.44 Score=49.96 Aligned_cols=176 Identities=12% Similarity=0.042 Sum_probs=102.1
Q ss_pred hHhhHHHHHHHhhccCC-HhHH--HhHHHHHHH-hhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHH
Q 002048 488 LKAGALKFFTMFRIQIP-KIHA--FQFFPDLVR-FLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMT 563 (975)
Q Consensus 488 Lr~ra~~~l~~f~~~~~-~~~~--~~~~~~l~~-~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~ 563 (975)
-|.+|+..+..+.+..+ ...+ ...++.++. +|++++..||..|+++|..+....+ .....+.. ...+.
T Consensus 56 ~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~------~~~~~vv~--~g~l~ 127 (296)
T 1xqr_A 56 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA------AIQEQVLG--LGALR 127 (296)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCH------HHHHHHHH--TTHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH------HHHHHHHH--CCCHH
Confidence 56677777777766432 1111 346788999 9999999999999999999886421 01111111 13445
Q ss_pred HHHHhcCCC-CchhhHHHHHHHHHHHh-hccchhhhHH-HHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcC
Q 002048 564 SLFNAFKFP-ESEENQYIMKCIMRVLG-VAEISNEVAA-PCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRD 640 (975)
Q Consensus 564 ~L~~ll~~~-~~~~~~~l~~~l~~vi~-~~~~i~p~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~ 640 (975)
.|+.+++.. +....+..+.++..++. ..+....+.. ..++.|..++ +++ ++.......-+|+.+... +
T Consensus 128 ~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL----~~~-d~~v~~~A~~aLs~L~~~----~ 198 (296)
T 1xqr_A 128 KLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAM----QQQ-VQKLKVKSAFLLQNLLVG----H 198 (296)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH----HSS-CHHHHHHHHHHHHHHHHH----C
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHH----cCC-CHHHHHHHHHHHHHHHhC----C
Confidence 555555432 22233345556665554 3332222211 1344444433 332 444444445555555443 4
Q ss_pred cchHHHH-HHhhHHHHHHHHhcccccchHHHHHHHHHHHHh
Q 002048 641 PSLISAF-EASILPSLQIILQNDVTEFLPYAFQLLAQLIEL 680 (975)
Q Consensus 641 ~~~~~~l-~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~ 680 (975)
++....+ +.-++|.+-..|.....++.+.++..+..++..
T Consensus 199 ~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 199 PEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp GGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 4544444 456888888888887778889999999888765
No 69
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=94.77 E-value=12 Score=46.57 Aligned_cols=381 Identities=11% Similarity=0.078 Sum_probs=188.0
Q ss_pred cchhhhHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHhccCCCCCchh--HHHHHHHHHHHHhhhcCCCccccCc
Q 002048 389 DVDTRRRIACELLKGIATHY----RQHVMETVSVQIQNLLTSFAANPVANWKD--KDCAIYLVVSLATKKAGSTSISTDL 462 (975)
Q Consensus 389 d~~s~R~~A~~ll~~L~~~~----~~~~~~~l~~~i~~~l~~~~~~~~~~w~~--keaal~~ig~ia~~~~~g~~~~~~~ 462 (975)
..|..+-|+.=.+++++... .+..++.++..+-++...- ...+-+. .-..++.+|.-+.-+...
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~---~~kd~k~~vas~i~~vlgrY~~wl~~h------- 560 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQK---RGKDNKAIIASNIMYIVGQYPRFLRAH------- 560 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHS---CSHHHHHHHHHHHHHHHHHCHHHHHHC-------
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccc---cccchhHHHHHHHHHHHhhhHHHHHhC-------
Confidence 35777777777777776443 2355666666666554320 0112222 222335666554443211
Q ss_pred ccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCH-----------hHHHhHHHHHHHhhcCCCchHHHHHH
Q 002048 463 VDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPK-----------IHAFQFFPDLVRFLGAESNVVHSYAA 531 (975)
Q Consensus 463 ~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~-----------~~~~~~~~~l~~~L~~~~~~V~~~Aa 531 (975)
..+-....+.++-.+.. .++-++..||..+.+++..+.. ..+.+++..+.+...+=+.--...-.
T Consensus 561 ~~~L~~vl~~L~~~m~~----~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~ly 636 (1073)
T 3gjx_A 561 WKFLKTVVNKLFEFMHE----THDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFY 636 (1073)
T ss_dssp HHHHHHHHHHHHHHTTC----CSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 11122222334433443 4788999999888887654322 23444554444443331211122233
Q ss_pred HHHHHHHccccCCCccccccccccchHHHHHHHHHHhcC----------CCCc-hhhHHHHHHHHHHHh-hccchhhhHH
Q 002048 532 SCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFK----------FPES-EENQYIMKCIMRVLG-VAEISNEVAA 599 (975)
Q Consensus 532 ~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~----------~~~~-~~~~~l~~~l~~vi~-~~~~i~p~~~ 599 (975)
.|+..+++.-... .-....+.-.+++.++.+-.+++ +.+. ...-.++++..+++. ++....|++.
T Consensus 637 eav~~vi~~~p~~---~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~ 713 (1073)
T 3gjx_A 637 EAVGYMIGAQTDQ---TVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLG 713 (1073)
T ss_dssp HHHHHHHTTCCCH---HHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHhCCCc---chHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHHHHHH
Confidence 3445555532100 00011222233333344333332 1100 112244566656666 7777777776
Q ss_pred HHHHHHHHHHHHHHhCC-------CC--Cc-hhHHHHHHHH-----HHHHHhhhcCcchHHHHHHhh-HHHHHHHHhc--
Q 002048 600 PCISGLTSILNEVCKNP-------KS--PI-FNHYLFESVA-----VLVRRACQRDPSLISAFEASI-LPSLQIILQN-- 661 (975)
Q Consensus 600 ~l~~~L~~~l~~~~~~~-------~~--~~-~~~~~~e~l~-----~li~~~~~~~~~~~~~l~~~l-~P~i~~il~~-- 661 (975)
.+...+..+.+..+++. +. .. -....++++. -+.+.+ +..++ ...+.+.+ =|++..++..
T Consensus 714 ~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i-~~~~~-~~~v~~~~i~pl~~~vl~dY~ 791 (1073)
T 3gjx_A 714 RIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWV-SRSND-PQMVAENFVPPLLDAVLIDYQ 791 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHH-TTCSC-HHHHHHHTSHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHH-hcCCC-HHHHHHHhHHHHHHHHHHHHh
Confidence 66555554433222211 10 00 0112233322 222233 32332 33334444 4444445432
Q ss_pred -ccccc-hHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCccc--c-cc----CCCccchHHHHHHHHccCccchhccC--
Q 002048 662 -DVTEF-LPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDS--W-KR----SSNVPALVRLLQAFLQKVPREIAQEG-- 730 (975)
Q Consensus 662 -~~~~~-~~~~l~ll~~ll~~~~~~~~~~~~~lf~~l~~~~l--~-~~----~~~l~~~~~~L~~~i~~~~~~~~~~~-- 730 (975)
...+. -+++|.++++++......+.+.+..+|..+..+++ . ++ ++......++++++..++...|++-+
T Consensus 792 ~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~ 871 (1073)
T 3gjx_A 792 RNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPA 871 (1073)
T ss_dssp HSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHH
T ss_pred cCCcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHH
Confidence 11121 26789999999988665466666666666555432 1 12 34567889999999999999888742
Q ss_pred chHHHHHHHHHhhcCCCCc--chHHHHHHHHHHhcch------hhHhhhHHHHHHHHHHHhhcCch
Q 002048 731 KLREVLGIFNMLVLSPSTD--EQGFYVLNTIVESLEY------GVIAQFVPHIWGVLFTRLQNKRT 788 (975)
Q Consensus 731 ~~~~il~i~~~ll~~~~~~--~~a~~ll~~ii~~~~~------~~~~~~l~~il~~~l~~L~~~~~ 788 (975)
....+++.+--.+.+...+ ..|++++..++.++.. ..+..|.-.++..++.-+.+..+
T Consensus 872 ~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~~~~~~~~F~~~~~~~~~~~i~~v~td~~h 937 (1073)
T 3gjx_A 872 QFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSH 937 (1073)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhCchH
Confidence 3445555444444444333 4578888888877531 12345555666666666655443
No 70
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.51 E-value=0.63 Score=56.63 Aligned_cols=208 Identities=12% Similarity=0.100 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHh
Q 002048 439 DCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRF 518 (975)
Q Consensus 439 eaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~ 518 (975)
|+|+.+++.++... |.. ..+|+|+... +|.+-....+...-+|..|-..+..+...++++....++|.++..
T Consensus 70 ~~a~~~~~~~~~~~--~~~-----~~~e~~~~~~-~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~ 141 (986)
T 2iw3_A 70 ANAMQAVAHIANQS--NLS-----PSVEPYIVQL-VPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNA 141 (986)
T ss_dssp HHHHHHHHHHTCTT--TCC-----TTTHHHHHTT-HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCC-----CCcccchHHH-HHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999999998654 211 2357887643 333221111245679999999999999999998999999999999
Q ss_pred hcCC-CchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh--hccchh
Q 002048 519 LGAE-SNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG--VAEISN 595 (975)
Q Consensus 519 L~~~-~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~--~~~~i~ 595 (975)
|.+. .-..++.|...+..+.+. .++.+.-.++.++-.+-..+-+...+......+++..++. -..++.
T Consensus 142 ~~~~~kw~~k~~~l~~~~~~~~~---------~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~ 212 (986)
T 2iw3_A 142 IVETNKWQEKIAILAAFSAMVDA---------AKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE 212 (986)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHH---------SHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG
T ss_pred hccccchHHHHHHHHHHHHHHHH---------hHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh
Confidence 9766 568889999999998864 2567888999999999999987755444555667777776 367888
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhcccccchHHHHHHHH
Q 002048 596 EVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDVTEFLPYAFQLLA 675 (975)
Q Consensus 596 p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~~~~~~~~~l~ll~ 675 (975)
|+.+.++..+. +|+ .+-+|+-.|-.. .--.++...-...+.|++...|.......-.-+.-++.
T Consensus 213 ~~~~~~~~~~~--------~p~------~~~~~~~~l~~~--tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~ 276 (986)
T 2iw3_A 213 RFIPSLIQCIA--------DPT------EVPETVHLLGAT--TFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIID 276 (986)
T ss_dssp GGHHHHHHHHH--------CTT------HHHHHHHHHTTC--CCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred hhHHHHHHHhc--------Chh------hhHHHHHHhhcC--eeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEc
Confidence 98776665432 443 355555443221 11233445556788899988886543322233444444
Q ss_pred HHHH
Q 002048 676 QLIE 679 (975)
Q Consensus 676 ~ll~ 679 (975)
.|.+
T Consensus 277 n~~~ 280 (986)
T 2iw3_A 277 NMCK 280 (986)
T ss_dssp HHHT
T ss_pred chhh
Confidence 4443
No 71
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=93.67 E-value=1.5 Score=43.03 Aligned_cols=179 Identities=12% Similarity=0.081 Sum_probs=110.0
Q ss_pred hcccccCCCCCCCcchhHhhHHHHHHHhhccC----CHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCcc
Q 002048 472 VIVPELQSPDVNAFPMLKAGALKFFTMFRIQI----PKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKS 547 (975)
Q Consensus 472 ~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~----~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~ 547 (975)
.+...+.+ ..+.++.|++..++..-... ....+..+++.++..+.+++-.|.+.|..||+.++..-.
T Consensus 37 ~L~~LL~d----kD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vp----- 107 (265)
T 3b2a_A 37 LILELAGE----DDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVP----- 107 (265)
T ss_dssp HHHHHTTS----SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCC-----
T ss_pred HHHHHHhc----cchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCC-----
Confidence 34555554 57899999999999876553 457789999999999999999999999999999998531
Q ss_pred ccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHH
Q 002048 548 RYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLGVAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFE 627 (975)
Q Consensus 548 ~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e 627 (975)
.+++ ...-++..|..++.+....-.++..+.+.. + .+......+++.+..++ ...|+......+.
T Consensus 108 -L~~~----~y~Kl~~aL~dlik~~~~il~~eaae~Lgk---l--kv~~~~~~V~~~l~sLl-----~Skd~~vK~agl~ 172 (265)
T 3b2a_A 108 -MGSK----TFLKAAKTLVSLLESPDDMMRIETIDVLSK---L--QPLEDSKLVRTYINELV-----VSPDLYTKVAGFC 172 (265)
T ss_dssp -BCHH----HHHHHHHHHHHHTTSCCHHHHHHHHHHHHH---C--CBSCCCHHHHHHHHHHH-----TCSSHHHHHHHHH
T ss_pred -CCHH----HHHHHHHHHHHHhcCCCchHHHHHHHHhCc---C--CcccchHHHHHHHHHHH-----hCCChhHHHHHHH
Confidence 1122 245566667777665432223333333322 2 22222334444444333 3345555556666
Q ss_pred HHHHHHHHhhhcCcchHHHHHHhhHHHHHHHHhcccccchHHHHHHHHHHHHh
Q 002048 628 SVAVLVRRACQRDPSLISAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIEL 680 (975)
Q Consensus 628 ~l~~li~~~~~~~~~~~~~l~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~ 680 (975)
.+..+... +++++... .++-=+...|+.+.....+-+++.+.-++..
T Consensus 173 ~L~eia~~--S~D~~i~~----~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 173 LFLNMLNS--SADSGHLT----LILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp HHHHHGGG--CSSCCCGG----GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHhhcc--cCCHHHHH----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 66665544 34555443 2333355666666555667788887766544
No 72
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=92.56 E-value=1.3 Score=43.57 Aligned_cols=120 Identities=18% Similarity=0.178 Sum_probs=90.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHhcCCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCCCCcCC
Q 002048 10 HLSQCFLHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPTLAP 89 (975)
Q Consensus 10 ~l~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~~~~~ 89 (975)
.+..++...-++|..+|..|=..|.++.. |+....|.+.+.+. +..+|..|+-.|.+.-.
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-~~~~~~L~~~l~~~--~~~vr~~a~~aL~~~~~----------------- 79 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD-ERAVEPLIKALKDE--DAWVRRAAADALGQIGD----------------- 79 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTTCS--CHHHHHHHHHHHHHHCC-----------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHcCC--CHHHHHHHHHHHHhhCC-----------------
Confidence 34445555568999999999999998754 67788888887764 78999999988875411
Q ss_pred CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccCCChhHHhHHHHHHHHH
Q 002048 90 ILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSI 166 (975)
Q Consensus 90 i~~e~K~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i 166 (975)
++ .-..|+..+.+++..+|...+.+++.+.. ++.++.|.+.+.++ ++.....++.+|..+
T Consensus 80 --~~----~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~----~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 80 --ER----AVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPLIKALKDE----DWFVRIAAAFALGEI 139 (211)
T ss_dssp --GG----GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCS----SHHHHHHHHHHHHHH
T ss_pred --HH----HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCC----CHHHHHHHHHHHHHc
Confidence 11 12345566666778899999999998864 56889999999888 888888888888776
No 73
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=92.38 E-value=1.2 Score=43.45 Aligned_cols=123 Identities=17% Similarity=0.172 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCCCC
Q 002048 7 TLQHLSQCFLHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPT 86 (975)
Q Consensus 7 ~~~~l~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~~ 86 (975)
.......++...-++|..+|..|=..|..+.. ++....|.+.+.+. +..+|..|+-.|.+.- .
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~~~--~~~vr~~a~~~L~~~~----~---------- 74 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-ERAVEPLIKALKDE--DAWVRRAAADALGQIG----D---------- 74 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHC----C----------
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHcCC--CHHHHHHHHHHHHhhC----C----------
Confidence 34556667777788999999999999998763 56778888888653 7889999998886531 0
Q ss_pred cCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccCCChhHHhHHHHHHHHH
Q 002048 87 LAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSI 166 (975)
Q Consensus 87 ~~~i~~e~K~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i 166 (975)
++ .-..|+..+.+++..+|...+.+++.+.. |+.++.+...+.++ ++.....+..+|..+
T Consensus 75 -----~~----~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~----~~~vr~~a~~aL~~~ 134 (201)
T 3ltj_A 75 -----ER----AVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPLIKALKDE----DWFVRIAAAFALGEI 134 (201)
T ss_dssp -----GG----GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCS----SHHHHHHHHHHHHHH
T ss_pred -----HH----HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHcCC----CHHHHHHHHHHHHHh
Confidence 11 12445556666778899999999998864 46888999999877 888888888887766
No 74
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=91.87 E-value=2.6 Score=43.45 Aligned_cols=126 Identities=9% Similarity=0.025 Sum_probs=74.7
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHhcCCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCCCCcCCCC
Q 002048 12 SQCFLHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPTLAPIL 91 (975)
Q Consensus 12 ~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~~~~~i~ 91 (975)
..++...-++|..+|..|=..|.++. .|+....|.+.+.+. +..+|..|+-.|-+.-. . .. .+
T Consensus 26 ~~L~~~L~~~~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~d~--~~~vR~~A~~aL~~l~~---~--~~--------~~- 88 (280)
T 1oyz_A 26 DELFRLLDDHNSLKRISSARVLQLRG-GQDAVRLAIEFCSDK--NYIRRDIGAFILGQIKI---C--KK--------CE- 88 (280)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHC-CHHHHHHHHHHHTCS--SHHHHHHHHHHHHHSCC---C--TT--------TH-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHccC-CchHHHHHHHHHcCC--CHHHHHHHHHHHHHhcc---c--cc--------cc-
Confidence 33444445678888888888888775 566777787777654 56888888877754311 0 00 11
Q ss_pred HHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccCCChhHHhHHHHHH
Q 002048 92 DAEKDQIKSLIVGL-MLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTA 163 (975)
Q Consensus 92 ~e~K~~Ir~~ll~~-l~~~~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l 163 (975)
..+-..+... +.+++..+|...+.+++.+...+ |...+.+++.+...++++ ++.....+...|
T Consensus 89 ----~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~-~~~~~~~~~~L~~~l~d~----~~~vR~~a~~aL 152 (280)
T 1oyz_A 89 ----DNVFNILNNMALNDKSACVRATAIESTAQRCKKN-PIYSPKIVEQSQITAFDK----STNVRRATAFAI 152 (280)
T ss_dssp ----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHTTCS----CHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-CcccHHHHHHHHHHhhCC----CHHHHHHHHHHH
Confidence 1133333322 33445667777777777776543 222456677777777666 665555544443
No 75
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=91.27 E-value=0.17 Score=45.77 Aligned_cols=78 Identities=9% Similarity=0.202 Sum_probs=56.9
Q ss_pred CCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhH
Q 002048 432 VANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQF 511 (975)
Q Consensus 432 ~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~ 511 (975)
+++|..|..|+.++|.+... ...+.+ ...+.+ +.+.+|..|+|.++++.+ ...
T Consensus 53 d~~~~vR~~A~~aL~~~~~~------------~a~~~L----~~~L~d----~~~~VR~~A~~aL~~~~~-------~~a 105 (131)
T 1te4_A 53 NEDWRIRGAAAWIIGNFQDE------------RAVEPL----IKLLED----DSGFVRSGAARSLEQIGG-------ERV 105 (131)
T ss_dssp CSCHHHHHHHHHHHGGGCSH------------HHHHHH----HHHHHH----CCTHHHHHHHHHHHHHCS-------HHH
T ss_pred CCCHHHHHHHHHHHHhcCCH------------HHHHHH----HHHHcC----CCHHHHHHHHHHHHHhCc-------HHH
Confidence 46789999999999876321 011222 223333 478999999999999864 246
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHH
Q 002048 512 FPDLVRFLGAESNVVHSYAASCIEK 536 (975)
Q Consensus 512 ~~~l~~~L~~~~~~V~~~Aa~aL~~ 536 (975)
++.+...|+|++..||..|+.||.+
T Consensus 106 ~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 106 RAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 7788888999999999999998864
No 76
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=90.92 E-value=0.34 Score=43.72 Aligned_cols=78 Identities=15% Similarity=0.093 Sum_probs=55.8
Q ss_pred CCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhH
Q 002048 432 VANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQF 511 (975)
Q Consensus 432 ~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~ 511 (975)
+++|..|..|+.+++.+.. ..+ +. +...+.+ +.+.+|..|+|.++++.+ ...
T Consensus 23 ~~~~~vR~~A~~~L~~~~~------------~~~-~~----L~~~L~d----~~~~vR~~A~~aL~~~~~-------~~a 74 (131)
T 1te4_A 23 DENKWVRRDVSTALSRMGD------------EAF-EP----LLESLSN----EDWRIRGAAAWIIGNFQD-------ERA 74 (131)
T ss_dssp SSCCCSSSSCCSSTTSCSS------------TTH-HH----HHHGGGC----SCHHHHHHHHHHHGGGCS-------HHH
T ss_pred CCCHHHHHHHHHHHHHhCc------------hHH-HH----HHHHHcC----CCHHHHHHHHHHHHhcCC-------HHH
Confidence 3567777777766664311 112 22 2334554 579999999999999875 245
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHH
Q 002048 512 FPDLVRFLGAESNVVHSYAASCIEKL 537 (975)
Q Consensus 512 ~~~l~~~L~~~~~~V~~~Aa~aL~~~ 537 (975)
++.+..+|+|++..||..|+.+|..+
T Consensus 75 ~~~L~~~L~d~~~~VR~~A~~aL~~~ 100 (131)
T 1te4_A 75 VEPLIKLLEDDSGFVRSGAARSLEQI 100 (131)
T ss_dssp HHHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 78888888999999999999999874
No 77
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=90.57 E-value=1.2 Score=47.53 Aligned_cols=91 Identities=11% Similarity=0.020 Sum_probs=71.9
Q ss_pred CCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhH
Q 002048 432 VANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQF 511 (975)
Q Consensus 432 ~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~ 511 (975)
++|...|--+|..+..++..- + ++- ...+.+..++++ +.|++|+-|+.+++..++. +....+
T Consensus 79 s~d~~lKrLvYLyl~~~~~~~-~---------e~i-Lv~Nsl~kDl~~----~N~~iR~lALRtL~~I~~~---~m~~~l 140 (355)
T 3tjz_B 79 SNDPTLRRMCYLTIKEMSCIA-E---------DVI-IVTSSLTKDMTG----KEDSYRGPAVRALCQITDS---TMLQAI 140 (355)
T ss_dssp CCCHHHHHHHHHHHHHHTTTS-S---------CGG-GGHHHHHHHHHS----SCHHHHHHHHHHHHHHCCT---TTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCH-H---------HHH-HHHHHHHhhcCC----CcHhHHHHHHHHHhcCCCH---HHHHHH
Confidence 567888888888887765431 1 111 345666778887 4799999999999999775 678899
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHcc
Q 002048 512 FPDLVRFLGAESNVVHSYAASCIEKLLQV 540 (975)
Q Consensus 512 ~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~ 540 (975)
.+.+-++|.|.++-||-.|+.|..+++..
T Consensus 141 ~~~lk~~L~d~~pyVRk~A~l~~~kL~~~ 169 (355)
T 3tjz_B 141 ERYMKQAIVDKVPSVSSSALVSSLHLLKC 169 (355)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999998887754
No 78
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=90.34 E-value=15 Score=40.85 Aligned_cols=207 Identities=10% Similarity=0.087 Sum_probs=105.4
Q ss_pred hHHHHHHHHHHHhh-chhhhhhcccCCCchhhHHHHhh------------------------cccCCCChhhH-HHHhhC
Q 002048 323 DSLAVTAIKFLTNV-STSVHHTLFAGEGVIPQICQNIV------------------------IPNVRLRDEDE-ELFEMN 376 (975)
Q Consensus 323 ~~~~~~~l~fl~~~-~~~~~~~~~~~~~~l~~l~~~li------------------------~~~l~l~~~d~-e~we~d 376 (975)
+...++++.+|..+ ..+.+|..+...+-+..++..+. +.+++...++- ..+...
T Consensus 162 ~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~ 241 (458)
T 3nmz_A 162 EHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 241 (458)
T ss_dssp TTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHc
Confidence 45678899999988 55667766544556666655332 11122211110 011000
Q ss_pred -H-HHHHhhcCCCCcchhhhHHHHHHHHHHHHH----hhhhhHH-HHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHH
Q 002048 377 -Y-VEFIRRDMEGSDVDTRRRIACELLKGIATH----YRQHVME-TVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLA 449 (975)
Q Consensus 377 -p-~efv~~~~d~~d~~s~R~~A~~ll~~L~~~----~~~~~~~-~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia 449 (975)
. ...+-+-+. +.....+..|...|..|+.. ....+.. -.+..+.+.|.. +.+...++.++.+++.++
T Consensus 242 ~GaIp~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~-----s~~~~v~~~A~~aL~nLs 315 (458)
T 3nmz_A 242 KGCMRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE-----VKKESTLKSVLSALWNLS 315 (458)
T ss_dssp HHHHHHHHHGGG-CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTT-----CCSHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHh-CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhc-----CCCHHHHHHHHHHHHHHc
Confidence 0 011111111 22345677777778887642 1111111 112222332221 245677888888898887
Q ss_pred hhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhcc--CCHhHH-----HhHHHHHHHhhcCC
Q 002048 450 TKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQ--IPKIHA-----FQFFPDLVRFLGAE 522 (975)
Q Consensus 450 ~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~--~~~~~~-----~~~~~~l~~~L~~~ 522 (975)
....+....+.......+.+. ..+.+.......-++..|+|++...+.. -.++.. ...++.++.+|.+.
T Consensus 316 ~~~~~nk~~I~~~~Gal~~Lv----~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~ 391 (458)
T 3nmz_A 316 AHCTENKADICAVDGALAFLV----GTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH 391 (458)
T ss_dssp HHCHHHHHHHHHSTTHHHHHH----HHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS
T ss_pred cCCHHHHHHHHHhcCcHHHHH----HHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC
Confidence 633110000000001122222 2334321001113788899999877642 122222 23689999999999
Q ss_pred CchHHHHHHHHHHHHHc
Q 002048 523 SNVVHSYAASCIEKLLQ 539 (975)
Q Consensus 523 ~~~V~~~Aa~aL~~~~~ 539 (975)
+..|+..|+.||..+..
T Consensus 392 ~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 392 SLTIVSNACGTLWNLSA 408 (458)
T ss_dssp CHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHHc
Confidence 99999999999999874
No 79
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=90.17 E-value=4.3 Score=41.83 Aligned_cols=178 Identities=10% Similarity=0.079 Sum_probs=100.2
Q ss_pred CCCchhHHHHHHHHHHHHhhhcCCCcc---ccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCC----
Q 002048 432 VANWKDKDCAIYLVVSLATKKAGSTSI---STDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIP---- 504 (975)
Q Consensus 432 ~~~w~~keaal~~ig~ia~~~~~g~~~---~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~---- 504 (975)
+.+|+.|..||-.+..+.......... ......+...+.. .+.+ .+..+...++.++..|...+.
T Consensus 20 sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk----~l~D----sN~~v~~~al~~l~~~~~~~~~~~~ 91 (278)
T 4ffb_C 20 YKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQ----YITD----SNVVAQEQAIVALNSLIDAFASSSL 91 (278)
T ss_dssp CSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHH----HTTC----SSHHHHHHHHHHHHHHHTTCC---C
T ss_pred cCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHH----Hhcc----chHHHHHHHHHHHHHHHHHhhhhhc
Confidence 679999999998776654332110000 0001112222222 2334 467888899999998865432
Q ss_pred -----HhHHHhHHHHHHH-hhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhH
Q 002048 505 -----KIHAFQFFPDLVR-FLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQ 578 (975)
Q Consensus 505 -----~~~~~~~~~~l~~-~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~ 578 (975)
......+++.++. +|.++...+|..|..++..++.... ....+++.+...++.-.-....
T Consensus 92 ~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~--------------~~~~~~e~l~~~l~~Knpkv~~ 157 (278)
T 4ffb_C 92 KNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT--------------SITQSVELVIPFFEKKLPKLIA 157 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS--------------SSHHHHHHHGGGGGCSCHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC--------------cHHHHHHHHHHHHhccCHHHHH
Confidence 1235567777775 5889988899888888877765421 1233455666555442111222
Q ss_pred HHHHHHHHHHh-hccchhh---hHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHh
Q 002048 579 YIMKCIMRVLG-VAEISNE---VAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRA 636 (975)
Q Consensus 579 ~l~~~l~~vi~-~~~~i~p---~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~ 636 (975)
..+..+.+++. ++....+ ....++..+...+ +..|+..+....+++..+-+.+
T Consensus 158 ~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l-----~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 158 AAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLA-----GHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHH-----TCSSHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHH-----hCCcHHHHHHHHHHHHHHHHHh
Confidence 34456666666 6544332 2233333333333 4456777778888888877776
No 80
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=89.76 E-value=24 Score=37.72 Aligned_cols=268 Identities=9% Similarity=0.066 Sum_probs=131.5
Q ss_pred HHHHHHHHHHhccCCC--------C-cchHHHHHHHHHHHhh-chhhhhhcccCCCchhhHHHHhh--------------
Q 002048 304 DFALAVWTLLGNVSQS--------S-SRDSLAVTAIKFLTNV-STSVHHTLFAGEGVIPQICQNIV-------------- 359 (975)
Q Consensus 304 ~~~~~~~~~l~~~~~~--------~-~~~~~~~~~l~fl~~~-~~~~~~~~~~~~~~l~~l~~~li-------------- 359 (975)
.+.+..|+........ + .++..+++++..|..+ ..+.+|..+...+-++.++..+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~ 97 (354)
T 3nmw_A 18 AYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYS 97 (354)
T ss_dssp HHHHHHHHHHHTCC-----CCCCCCCGGGGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHH
T ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCC
Confidence 3445667665542211 1 2356677889999888 55666665544455665555332
Q ss_pred ----------cccCCCChhhH-HHHhhC-H-HHHHhhcCCCCcchhhhHHHHHHHHHHHHH----hhhhhHH-HHHHHHH
Q 002048 360 ----------IPNVRLRDEDE-ELFEMN-Y-VEFIRRDMEGSDVDTRRRIACELLKGIATH----YRQHVME-TVSVQIQ 421 (975)
Q Consensus 360 ----------~~~l~l~~~d~-e~we~d-p-~efv~~~~d~~d~~s~R~~A~~ll~~L~~~----~~~~~~~-~l~~~i~ 421 (975)
+.+++...++- ...... . ...+-+-+. +.....+..|...|..|+.. ....+.. -.+..+.
T Consensus 98 ~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 98 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHC-CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 11222222211 111000 0 111111122 23345777788888888753 1111111 1122333
Q ss_pred HHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhc
Q 002048 422 NLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRI 501 (975)
Q Consensus 422 ~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~ 501 (975)
+.|.. +.+...++.+..+++.++....+....+.......+.+.+ .+.+.......-++..|+|++...+.
T Consensus 177 ~lL~~-----~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~----lL~~~~~~~~~~v~~~A~~aL~nLs~ 247 (354)
T 3nmw_A 177 ECALE-----VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVG----TLTYRSQTNTLAIIESGGGILRNVSS 247 (354)
T ss_dssp HHHHH-----CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHH----HTTCCCSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHhc-----CCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHH----HhccCCCcccHHHHHHHHHHHHHHHh
Confidence 33322 2456778888888888875321100000000111222222 33332100111478889999887765
Q ss_pred c--CCHhHHH-----hHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCc
Q 002048 502 Q--IPKIHAF-----QFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPES 574 (975)
Q Consensus 502 ~--~~~~~~~-----~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~ 574 (975)
. -.++... ..++.++..|.+++..++..|+.||..+..... -....+. -...+..|..++...+.
T Consensus 248 ~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~------~~~~~i~--~~G~i~~Lv~LL~s~~~ 319 (354)
T 3nmw_A 248 LIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNP------KDQEALW--DMGAVSMLKNLIHSKHK 319 (354)
T ss_dssp HHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH------HHHHHHH--HTTHHHHHHTTTTCSSH
T ss_pred hccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCH------HHHHHHH--HCCCHHHHHHHHhCCCH
Confidence 2 1222222 368999999999999999999999999874211 0011111 12346667777766433
Q ss_pred hhhHHHHHHHHHHHh
Q 002048 575 EENQYIMKCIMRVLG 589 (975)
Q Consensus 575 ~~~~~l~~~l~~vi~ 589 (975)
...+....++..+..
T Consensus 320 ~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 320 MIAMGSAAALRNLMA 334 (354)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc
Confidence 233344444444433
No 81
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=89.05 E-value=5 Score=43.06 Aligned_cols=226 Identities=12% Similarity=0.026 Sum_probs=113.5
Q ss_pred cchhHhhHHHHHHHhhccC--CHhHH---HhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCcccccccccc--ch
Q 002048 485 FPMLKAGALKFFTMFRIQI--PKIHA---FQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADIT--PY 557 (975)
Q Consensus 485 ~~~Lr~ra~~~l~~f~~~~--~~~~~---~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~--p~ 557 (975)
.+-+|..|+|.+...+..- .+..+ ..++|.++.+|++++..|+..|+.||..+....+. ..+..+. .-
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~-----~~k~~i~~~G~ 171 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV-----NSKKTLREVGS 171 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCH-----HHHHHHHHTTH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCH-----HHHHHHHHCCC
Confidence 5779999999999986432 12222 34699999999999999999999999998653110 0122222 22
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccchhhhH---HHHHHHHHHHHHHHHhCCCCC---chhHHHHHHHHH
Q 002048 558 LSVLMTSLFNAFKFPESEENQYIMKCIMRVLGVAEISNEVA---APCISGLTSILNEVCKNPKSP---IFNHYLFESVAV 631 (975)
Q Consensus 558 l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~~~~~i~p~~---~~l~~~L~~~l~~~~~~~~~~---~~~~~~~e~l~~ 631 (975)
++.+++.|. +..+....+....++..+....++..+-. ...+..|+.++ ..+++. .......-++..
T Consensus 172 Ip~Lv~lL~---~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL----~~~~~~~~~~v~~~A~~aL~n 244 (354)
T 3nmw_A 172 VKALMECAL---EVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTL----TYRSQTNTLAIIESGGGILRN 244 (354)
T ss_dssp HHHHHHHHH---HCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHT----TCCCSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHh---cCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHh----ccCCCcccHHHHHHHHHHHHH
Confidence 344444333 22222223334445544433122222111 11233343333 333321 122233334444
Q ss_pred HHHHhhhcCcchHHHHH-HhhHHHHHHHHhcccccchHHHHHHHHHHHHhcCCCCchhHH--HHHHhhcCcccccc--CC
Q 002048 632 LVRRACQRDPSLISAFE-ASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRPPLSSNYM--QIFNLLLSPDSWKR--SS 706 (975)
Q Consensus 632 li~~~~~~~~~~~~~l~-~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~~~~~~~~~~~--~lf~~l~~~~l~~~--~~ 706 (975)
+...+ ..+++....+. .-.+|.+-..|.....+....+.-.+..+....+. .-..+. ..+|++... ..+ ..
T Consensus 245 Ls~~~-a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~-~~~~i~~~G~i~~Lv~L--L~s~~~~ 320 (354)
T 3nmw_A 245 VSSLI-ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK-DQEALWDMGAVSMLKNL--IHSKHKM 320 (354)
T ss_dssp HHHHH-TTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH-HHHHHHHTTHHHHHHTT--TTCSSHH
T ss_pred HHhhc-cCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHH-HHHHHHHCCCHHHHHHH--HhCCCHH
Confidence 43321 12344433333 34688888888776666677777777766432111 111121 234555542 221 12
Q ss_pred CccchHHHHHHHHccCccch
Q 002048 707 NVPALVRLLQAFLQKVPREI 726 (975)
Q Consensus 707 ~l~~~~~~L~~~i~~~~~~~ 726 (975)
....+...|.+.....++..
T Consensus 321 i~~~A~~aL~nL~~~~~~~~ 340 (354)
T 3nmw_A 321 IAMGSAAALRNLMANRPAKY 340 (354)
T ss_dssp HHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHcCCHHHH
Confidence 33445556666666555443
No 82
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=88.84 E-value=1.7 Score=45.07 Aligned_cols=187 Identities=13% Similarity=0.080 Sum_probs=105.2
Q ss_pred cchhhhHHHHHHHHHHHHHhhhhhHH-----HH---HHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCcccc
Q 002048 389 DVDTRRRIACELLKGIATHYRQHVME-----TV---SVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSIST 460 (975)
Q Consensus 389 d~~s~R~~A~~ll~~L~~~~~~~~~~-----~l---~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~ 460 (975)
-.|..|..|.+-+..+....+..... .+ ...+...+. ..|....+.++-++..++..+.....
T Consensus 21 k~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~------DsN~~v~~~al~~l~~~~~~~~~~~~--- 91 (278)
T 4ffb_C 21 KLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT------DSNVVAQEQAIVALNSLIDAFASSSL--- 91 (278)
T ss_dssp SSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTT------CSSHHHHHHHHHHHHHHHTTCC---C---
T ss_pred CcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc------cchHHHHHHHHHHHHHHHHHhhhhhc---
Confidence 35777888877776666543221111 01 111222221 34667778888888887755411100
Q ss_pred CcccHHHHHHHhcccccCCC-CCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHc
Q 002048 461 DLVDVQSFFTSVIVPELQSP-DVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQ 539 (975)
Q Consensus 461 ~~~~~~~~l~~~v~p~l~~~-~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~ 539 (975)
.-.....+...++|.+... -.+..+-+|..|..++..+..... ....+++.++..+++.++-|+..+...|.+++.
T Consensus 92 -~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~--~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 92 -KNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT--SITQSVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS--SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred -ccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 0001111222333333210 001467888889988888776432 123456778888999999999999999999886
Q ss_pred cccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh-hccc
Q 002048 540 VKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG-VAEI 593 (975)
Q Consensus 540 ~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~-~~~~ 593 (975)
... ...-...+.++.++..+.+++...+....+..++++..+.. +++.
T Consensus 169 ~fg------~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 169 AFG------LTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp HHT------TTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred HhC------CCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 521 12234567788899999999988765555555555555555 5544
No 83
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=88.81 E-value=17 Score=36.84 Aligned_cols=93 Identities=12% Similarity=0.198 Sum_probs=63.3
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHH
Q 002048 390 VDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFF 469 (975)
Q Consensus 390 ~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l 469 (975)
-.++|..+..++..++..++.. .+..++.+.+. +.|||.|+.++..++++-.. .|..
T Consensus 145 k~~vR~~~r~il~~l~~v~~~~---~v~~~l~~g~k------sKN~R~R~e~l~~l~~li~~--~G~~------------ 201 (266)
T 2of3_A 145 KDNMRTSVRDIVNVLSDVVGPL---KMTPMLLDALK------SKNARQRSECLLVIEYYITN--AGIS------------ 201 (266)
T ss_dssp SHHHHHHHHHHHHHHHHHHCHH---HHHHHHHHGGG------CSCHHHHHHHHHHHHHHHHH--HCSG------------
T ss_pred hHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHc------cCCHHHHHHHHHHHHHHHHh--cCCC------------
Confidence 4778999999999999876532 23344433332 57899999999999877432 1211
Q ss_pred HHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHcc
Q 002048 470 TSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQV 540 (975)
Q Consensus 470 ~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~ 540 (975)
| .....+.+.+..++.|++..||..|..|+..+...
T Consensus 202 ----------------~-------------------~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 202 ----------------P-------------------LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp ----------------G-------------------GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred ----------------c-------------------cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 0 00112227888899999999999998888876554
No 84
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=86.60 E-value=7.4 Score=43.28 Aligned_cols=226 Identities=12% Similarity=-0.004 Sum_probs=113.9
Q ss_pred cchhHhhHHHHHHHhhccC--CHhHH---HhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHH
Q 002048 485 FPMLKAGALKFFTMFRIQI--PKIHA---FQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLS 559 (975)
Q Consensus 485 ~~~Lr~ra~~~l~~f~~~~--~~~~~---~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~ 559 (975)
.+-++..|+|.++..+..- .+..+ ..++|.++.+|.+++..|+..|++||..+....+. ..+..+.. .
T Consensus 213 ~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~-----~~k~~I~~--~ 285 (458)
T 3nmz_A 213 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV-----NSKKTLRE--V 285 (458)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCH-----HHHHHHHH--T
T ss_pred CHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCH-----HHHHHHHH--c
Confidence 5678999999999976432 22222 34699999999999999999999999987542110 01222221 1
Q ss_pred HHHHHHHHhcCC-CCchhhHHHHHHHHHHHhhccchhhhHH---HHHHHHHHHHHHHHhCCCCC---chhHHHHHHHHHH
Q 002048 560 VLMTSLFNAFKF-PESEENQYIMKCIMRVLGVAEISNEVAA---PCISGLTSILNEVCKNPKSP---IFNHYLFESVAVL 632 (975)
Q Consensus 560 ~il~~L~~ll~~-~~~~~~~~l~~~l~~vi~~~~~i~p~~~---~l~~~L~~~l~~~~~~~~~~---~~~~~~~e~l~~l 632 (975)
..+..|+.++.. .+....+....++..+....++..+-.. ..+..|+. ....+++. .......-+|..+
T Consensus 286 GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~----LL~~~~~~~~~~v~~~A~~aL~nL 361 (458)
T 3nmz_A 286 GSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVG----TLTYRSQTNTLAIIESGGGILRNV 361 (458)
T ss_dssp THHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHH----HTTCCCSSSTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHH----HhcCCCCcchHHHHHHHHHHHHHH
Confidence 344555554333 2222233344455444331222221111 12333333 33333322 1223333344444
Q ss_pred HHHhhhcCcchHHHHH-HhhHHHHHHHHhcccccchHHHHHHHHHHHHhcCCCCchhHH--HHHHhhcCccccccCCCcc
Q 002048 633 VRRACQRDPSLISAFE-ASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRPPLSSNYM--QIFNLLLSPDSWKRSSNVP 709 (975)
Q Consensus 633 i~~~~~~~~~~~~~l~-~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~~~~~~~~~~~--~lf~~l~~~~l~~~~~~l~ 709 (975)
...+ ..+++....+. .-.+|.+-..|.....+...++.-.+..+....+. .-..+. ..+|++....--.+.....
T Consensus 362 s~~~-a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~-~~~~i~~~G~I~~Lv~LL~s~~~~v~~ 439 (458)
T 3nmz_A 362 SSLI-ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK-DQEALWDMGAVSMLKNLIHSKHKMIAM 439 (458)
T ss_dssp HHHH-TTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHH-HHHHHHHHTHHHHHHTTTTCSSHHHHH
T ss_pred Hhcc-cCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHHHHhCCCHHHHH
Confidence 3321 12444444433 35688888888776666777787777777533221 111121 2345555421001112334
Q ss_pred chHHHHHHHHccCc
Q 002048 710 ALVRLLQAFLQKVP 723 (975)
Q Consensus 710 ~~~~~L~~~i~~~~ 723 (975)
.+...|.+.....|
T Consensus 440 ~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 440 GSAAALRNLMANRP 453 (458)
T ss_dssp HHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHcCCH
Confidence 55556666655544
No 85
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=86.06 E-value=23 Score=40.60 Aligned_cols=166 Identities=10% Similarity=0.082 Sum_probs=98.9
Q ss_pred chhhhHHHHHHHHHHHHHhh---hh------hHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCC----
Q 002048 390 VDTRRRIACELLKGIATHYR---QH------VMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGST---- 456 (975)
Q Consensus 390 ~~s~R~~A~~ll~~L~~~~~---~~------~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~---- 456 (975)
...++..|..+|..|+...+ +. +.+.++.++...+.. ...+-+.++-|+.++..++..+...+
T Consensus 205 d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~----~~~~~~~~enav~aL~NLs~~~~~e~~~~~ 280 (584)
T 3l6x_A 205 WESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQ----KDSDSKLVENCVCLLRNLSYQVHREIPQAE 280 (584)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHT----TCCSCHHHHHHHHHHHHHHTTHHHHSTTCC
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcc----cCccHHHHHHHHHHHHHhhccccccccchh
Confidence 34677888889999975421 11 223455555544332 23456888989999988886641100
Q ss_pred --cc----------ccCcccHHHHH----HHhcccccCCCCCCCcchhHhhHHHHHHHhhcc-C--CHh---HH--HhHH
Q 002048 457 --SI----------STDLVDVQSFF----TSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQ-I--PKI---HA--FQFF 512 (975)
Q Consensus 457 --~~----------~~~~~~~~~~l----~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~-~--~~~---~~--~~~~ 512 (975)
.+ ....-.++..+ ...++..++.. ..+-++..|+|.+...+.. . +.. .+ ...+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s---~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~gl 357 (584)
T 3l6x_A 281 RYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKES---KTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKAL 357 (584)
T ss_dssp C--------------CCCCGGGGGGSHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHH
T ss_pred hhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccC---CCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcH
Confidence 00 00000111110 11223334321 3577888999999887532 1 111 11 3569
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCC
Q 002048 513 PDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFP 572 (975)
Q Consensus 513 ~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~ 572 (975)
+.++.+|.+++..|+..|+.||..+..... ....| -...+..|..+|...
T Consensus 358 p~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~-------~~~~I---~~g~ip~LV~LL~~~ 407 (584)
T 3l6x_A 358 SAIADLLTNEHERVVKAASGALRNLAVDAR-------NKELI---GKHAIPNLVKNLPGG 407 (584)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHTTCS-------CHHHH---HHHHHHHHHHTSSSS
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCChh-------HHHHH---HhCCHHHHHHHhcCC
Confidence 999999999999999999999999887532 23334 356788888888765
No 86
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=84.78 E-value=72 Score=40.38 Aligned_cols=142 Identities=13% Similarity=0.161 Sum_probs=80.2
Q ss_pred chhhhHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCC--Ccc--ccC---
Q 002048 390 VDTRRRIACELLKGIATH-YRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGS--TSI--STD--- 461 (975)
Q Consensus 390 ~~s~R~~A~~ll~~L~~~-~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g--~~~--~~~--- 461 (975)
...+|.....++..++.. +++.- +-++..+.+.++. +...+++++.++..+.+..... ... .+.
T Consensus 109 ~~~vr~kla~~la~Ia~~d~p~~W-p~ll~~L~~~~~~-------~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~ 180 (1204)
T 3a6p_A 109 ENHIKDALSRIVVEMIKREWPQHW-PDMLIELDTLSKQ-------GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQ 180 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHHSTTTC-TTHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCcccc-hHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHH
Confidence 355777777888888766 45332 3344444444431 2356888999999987654211 100 000
Q ss_pred --cc---cHHHHHHHhcccc----------cCCCC-CCCcchhHhhHHHHHHHhhccCCHhHHH----hHHHHHHHhhcC
Q 002048 462 --LV---DVQSFFTSVIVPE----------LQSPD-VNAFPMLKAGALKFFTMFRIQIPKIHAF----QFFPDLVRFLGA 521 (975)
Q Consensus 462 --~~---~~~~~l~~~v~p~----------l~~~~-~~~~~~Lr~ra~~~l~~f~~~~~~~~~~----~~~~~l~~~L~~ 521 (975)
.. ++-.++.+.+-.. ..+.+ ..+++-++..++.++..|.++++..... .+++.+...+++
T Consensus 181 ~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~ 260 (1204)
T 3a6p_A 181 TLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE 260 (1204)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC
Confidence 00 1111111111000 00000 0024557888999999998887755432 388888888775
Q ss_pred CCchHHHHHHHHHHHHHccc
Q 002048 522 ESNVVHSYAASCIEKLLQVK 541 (975)
Q Consensus 522 ~~~~V~~~Aa~aL~~~~~~~ 541 (975)
..+|..|+.||..++..+
T Consensus 261 --~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 261 --QELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp --TTTHHHHHHHHHHHHTCC
T ss_pred --HHHHHHHHHHHHHHHhCC
Confidence 457889999999998754
No 87
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=84.70 E-value=70 Score=37.70 Aligned_cols=76 Identities=12% Similarity=-0.029 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHhcccCCCCCC--chHHHHHHHhcccccCCChhHHhHHHHHHH
Q 002048 89 PILDAEKDQIKSLIVGLMLTS--TPRIQSQLSEALVVVGNHDFPKHWP--TLLPELIANLKDAAQSNNYVSINGILGTAN 164 (975)
Q Consensus 89 ~i~~e~K~~Ir~~ll~~l~~~--~~~ir~qla~~i~~Ia~~D~P~~Wp--~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~ 164 (975)
++.+.-|..|-++.++.|.+. ...+|...+.++.++....-+.++. +|.+.+...+.++ +...+.-|+..|.
T Consensus 284 Ci~~~cR~~I~~~~~~~L~~~l~~~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~----~~~~~~~AvEgLa 359 (778)
T 3opb_A 284 CIDETMRTYITENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRR----IVPKVEMSVEALA 359 (778)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTTSGGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTC----CHHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHhHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcC----CccHHHHHHHHHH
Confidence 578888998888888777652 3578999999999998866555543 6888888888876 5555667777777
Q ss_pred HHHH
Q 002048 165 SIFK 168 (975)
Q Consensus 165 ~i~k 168 (975)
.+..
T Consensus 360 YLSl 363 (778)
T 3opb_A 360 YLSL 363 (778)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 7753
No 88
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=84.45 E-value=5.2 Score=40.61 Aligned_cols=178 Identities=10% Similarity=0.011 Sum_probs=105.1
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhHHH---HHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhh-cCCCccccCcccHH
Q 002048 391 DTRRRIACELLKGIATHYRQHVMET---VSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKK-AGSTSISTDLVDVQ 466 (975)
Q Consensus 391 ~s~R~~A~~ll~~L~~~~~~~~~~~---l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~-~~g~~~~~~~~~~~ 466 (975)
+.-|.+|.+.|.......++.+... ++..+.-.+. ..|...--.++-++..+...+ ..|+. ..
T Consensus 60 ~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~------d~N~~v~~~~L~~L~~l~~~l~~~~y~----~~--- 126 (266)
T 2of3_A 60 FKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFF------ETNPAALIKVLELCKVIVELIRDTETP----MS--- 126 (266)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTT------SCCHHHHHHHHHHHHHHHHHHHHTTCC----CC---
T ss_pred HHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHHHhcccc----ch---
Confidence 3556777777777666555544332 3444432221 234455556666666665544 23322 11
Q ss_pred HHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCc
Q 002048 467 SFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGK 546 (975)
Q Consensus 467 ~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~ 546 (975)
+.=...++|.|-..-+++..-+|..+-.++-......++ ..+++.+++.+.+.+..+|..++..+..+++...
T Consensus 127 ~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~---~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G---- 199 (266)
T 2of3_A 127 QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP---LKMTPMLLDALKSKNARQRSECLLVIEYYITNAG---- 199 (266)
T ss_dssp HHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC----
Confidence 111122334432211124566888888888777665443 4567778889999999999999999999887632
Q ss_pred cccccccccchHHHHH---HHHHHhcCCCCchhhHHHHHHHHHHHh-hccchhhh
Q 002048 547 SRYNSADITPYLSVLM---TSLFNAFKFPESEENQYIMKCIMRVLG-VAEISNEV 597 (975)
Q Consensus 547 ~~~~~~~l~p~l~~il---~~L~~ll~~~~~~~~~~l~~~l~~vi~-~~~~i~p~ 597 (975)
.. | ...+ ..+.+++++.+....+..+.|+..+.. .|+.+..+
T Consensus 200 --~~-----~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~ 245 (266)
T 2of3_A 200 --IS-----P--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKA 245 (266)
T ss_dssp --SG-----G--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred --CC-----c--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 11 1 1134 667778888765556666777777766 77776544
No 89
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=80.41 E-value=7.4 Score=41.50 Aligned_cols=122 Identities=10% Similarity=0.060 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHh
Q 002048 393 RRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSV 472 (975)
Q Consensus 393 ~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~ 472 (975)
.|+-.--.+..+++. ++.+. .+.+.+.+-++ ++|...|=.|++.++.+... .+-+.+...
T Consensus 84 lKrLvYLyl~~~~~~-~~e~i-Lv~Nsl~kDl~------~~N~~iR~lALRtL~~I~~~------------~m~~~l~~~ 143 (355)
T 3tjz_B 84 LRRMCYLTIKEMSCI-AEDVI-IVTSSLTKDMT------GKEDSYRGPAVRALCQITDS------------TMLQAIERY 143 (355)
T ss_dssp HHHHHHHHHHHHTTT-SSCGG-GGHHHHHHHHH------SSCHHHHHHHHHHHHHHCCT------------TTHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-HHHHH-HHHHHHHhhcC------CCcHhHHHHHHHHHhcCCCH------------HHHHHHHHH
Confidence 344333334444443 44444 44444444444 45668899999999998531 123344455
Q ss_pred cccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHc
Q 002048 473 IVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQ 539 (975)
Q Consensus 473 v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~ 539 (975)
+...+.+ .+|++|..|+.+..+.... .|+....+++.+-.++.|.+..|...|..++..+..
T Consensus 144 lk~~L~d----~~pyVRk~A~l~~~kL~~~-~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 144 MKQAIVD----KVPSVSSSALVSSLHLLKC-SFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp HHHHHTC----SSHHHHHHHHHHHHHHTTT-CHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHcCC----CCHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence 5666666 6899999999998876543 457778889999999999988888767766666543
No 90
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=77.54 E-value=19 Score=40.02 Aligned_cols=186 Identities=12% Similarity=0.042 Sum_probs=96.7
Q ss_pred CcchhHhhHHHHHHHhhccCC--H-h-HHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHH
Q 002048 484 AFPMLKAGALKFFTMFRIQIP--K-I-HAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLS 559 (975)
Q Consensus 484 ~~~~Lr~ra~~~l~~f~~~~~--~-~-~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~ 559 (975)
+.+-+|..|++.+...+..-+ + . .-...+|.++.+|++++..++..|+.||..+....+ ..+..+.. .
T Consensus 14 ~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~------~~k~~i~~--~ 85 (457)
T 1xm9_A 14 QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRST------TNKLETRR--Q 85 (457)
T ss_dssp SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH------HHHHHHHH--T
T ss_pred CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH------HHHHHHHH--c
Confidence 357789999999999874322 1 1 134578999999999999999999999999876411 01222211 1
Q ss_pred HHHHHHHHhcC-CCCchhhHHHHHHHHHHHhhccchhhhH-HHHHHHHHHHHHHH-H---hCCCCC--c-hhHHHHHHHH
Q 002048 560 VLMTSLFNAFK-FPESEENQYIMKCIMRVLGVAEISNEVA-APCISGLTSILNEV-C---KNPKSP--I-FNHYLFESVA 630 (975)
Q Consensus 560 ~il~~L~~ll~-~~~~~~~~~l~~~l~~vi~~~~~i~p~~-~~l~~~L~~~l~~~-~---~~~~~~--~-~~~~~~e~l~ 630 (975)
..+..|..++. ..+....+....++..+... ++..... ...++.|+.++..- + +.+... . -...+++.-.
T Consensus 86 G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~ 164 (457)
T 1xm9_A 86 NGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNAT 164 (457)
T ss_dssp TCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHH
T ss_pred CCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHH
Confidence 33555666666 33222334445555444332 2222211 13344444444110 0 111100 0 0123333333
Q ss_pred HHHHHhhhcCcchHHHHHH--hhHHHHHHHHhcc------cccchHHHHHHHHHHHH
Q 002048 631 VLVRRACQRDPSLISAFEA--SILPSLQIILQND------VTEFLPYAFQLLAQLIE 679 (975)
Q Consensus 631 ~li~~~~~~~~~~~~~l~~--~l~P~i~~il~~~------~~~~~~~~l~ll~~ll~ 679 (975)
..+..+|. +++....+.+ -++|.+...+... .....+.++-++..+.+
T Consensus 165 ~aL~nLs~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~ 220 (457)
T 1xm9_A 165 GCLRNLSS-ADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSY 220 (457)
T ss_dssp HHHHHHTT-SHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTT
T ss_pred HHHHHHcc-CHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhccc
Confidence 33444443 3555555553 4677777666541 22456667666665543
No 91
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=76.61 E-value=22 Score=39.77 Aligned_cols=167 Identities=11% Similarity=0.123 Sum_probs=87.5
Q ss_pred cchhhhHHHHHHHHHHHHHhhh-----------hhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCc
Q 002048 389 DVDTRRRIACELLKGIATHYRQ-----------HVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTS 457 (975)
Q Consensus 389 d~~s~R~~A~~ll~~L~~~~~~-----------~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~ 457 (975)
..|..|..|.--|+.+.+.-+. .+...+--++-..+..|.++. .---.||+|-.++|++ ..+...
T Consensus 186 p~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDq-VVAPVRETaAQtLGaL-~hLp~e-- 261 (800)
T 3oc3_A 186 YEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDR-TVAPVRDAAAYLLSRI-YPLIGP-- 261 (800)
T ss_dssp SSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSS-CBCHHHHHHHHHHHHH-TTTSCS--
T ss_pred cchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCe-eeeehHHHHHHHHHHH-HhCChh--
Confidence 3566788777778888766431 122222222222233332221 1235788888888887 544221
Q ss_pred cccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 002048 458 ISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKL 537 (975)
Q Consensus 458 ~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~ 537 (975)
.++ +.+.+ ..+.. +.=-+|--++.-+..+.+.+.. +..+++.++.+|+|++--||..||.+|..+
T Consensus 262 -----~~I---L~qLV-~~l~~----~~WEVRHGGLLGLKYL~DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPI 326 (800)
T 3oc3_A 262 -----NDI---IEQLV-GFLDS----GDWQVQFSGLIALGYLKEFVED--KDGLCRKLVSLLSSPDEDIKLLSAELLCHF 326 (800)
T ss_dssp -----CCH---HHHHT-TGGGC----SCHHHHHHHHHHHHHTGGGCCC--HHHHHHHHHHHTTCSSHHHHHHHHHHHTTS
T ss_pred -----HHH---HHHHH-hhcCC----CCeeehhhhHHHHHHHHHHHHH--HHHHHHHHHhhcCCcccHHHHHHHHHhhhh
Confidence 122 11111 11221 1122343344333344343332 889999999999999888999999887754
Q ss_pred HccccCCCccccccccccchHHHHHHHHHHhcCCCCch--hhHHHHHHHHHHHh
Q 002048 538 LQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESE--ENQYIMKCIMRVLG 589 (975)
Q Consensus 538 ~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~--~~~~l~~~l~~vi~ 589 (975)
. . + ..++.++..+-.++.+.+.. ....+|+.+..++.
T Consensus 327 A-~----------p----~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s 365 (800)
T 3oc3_A 327 P-I----------T----DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYR 365 (800)
T ss_dssp C-C----------S----STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHH
T ss_pred c-c----------h----hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHc
Confidence 4 1 1 23555555555555443221 33355555555444
No 92
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=76.60 E-value=87 Score=35.92 Aligned_cols=261 Identities=13% Similarity=0.207 Sum_probs=120.2
Q ss_pred hHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCC--CchHHHHHHHHHHHHHccccCCCcc---ccccccccchH----
Q 002048 488 LKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAE--SNVVHSYAASCIEKLLQVKDEGGKS---RYNSADITPYL---- 558 (975)
Q Consensus 488 Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~--~~~V~~~Aa~aL~~~~~~~~~~~~~---~~~~~~l~p~l---- 558 (975)
=|+.|+.-+-.|+...+.+.-...++.+++.|+.. |.-+--.+-.+|..++...+..... ....+++.-..
T Consensus 38 DRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f 117 (651)
T 3grl_A 38 DRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIF 117 (651)
T ss_dssp HHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHH
Confidence 46777777777877666666677788888888753 3222222333443333321100000 00011121111
Q ss_pred ---HHHHHHHHHhcCCCCchhhHHHHHHHHHHHh-hccchhhhH---HHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 002048 559 ---SVLMTSLFNAFKFPESEENQYIMKCIMRVLG-VAEISNEVA---APCISGLTSILNEVCKNPKSPIFNHYLFESVAV 631 (975)
Q Consensus 559 ---~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~-~~~~i~p~~---~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~ 631 (975)
+.-+..|+.+++..+-...-+.+..+..++. -.+...... +.-++.|+.++ +++.++ .+. |++..
T Consensus 118 ~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL----~d~rE~-iRn---eallL 189 (651)
T 3grl_A 118 IKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL----ADSREV-IRN---DGVLL 189 (651)
T ss_dssp HHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG----GCSSHH-HHH---HHHHH
T ss_pred HcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH----hCchHH-HHH---HHHHH
Confidence 2346667777766543233355555544443 222222111 11234444333 222111 111 23333
Q ss_pred HHHHhhhcCcchHHHHHH--hhHHHHHHHHhcccc----cchHHHHHHHHHHHHhcCCCCchhHH---HHHHhhcCc---
Q 002048 632 LVRRACQRDPSLISAFEA--SILPSLQIILQNDVT----EFLPYAFQLLAQLIELNRPPLSSNYM---QIFNLLLSP--- 699 (975)
Q Consensus 632 li~~~~~~~~~~~~~l~~--~l~P~i~~il~~~~~----~~~~~~l~ll~~ll~~~~~~~~~~~~---~lf~~l~~~--- 699 (975)
|.... .++++ ..++.. ..++.+-.++..+.. ....+|+.++..+++..++ ...+. .+.|.+...
T Consensus 190 L~~Lt-~~n~~-iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~s--NQ~~FrEt~~i~~L~~LL~~ 265 (651)
T 3grl_A 190 LQALT-RSNGA-IQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNS--NQNFFKEGSYIQRMKPWFEV 265 (651)
T ss_dssp HHHHH-TTCHH-HHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHH--HHHHHHHTTCGGGGGGGGCC
T ss_pred HHHHh-cCCHH-HHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHH--HHHHHHHcCCHHHHHHHhCC
Confidence 33332 44443 333332 345666666655432 5678999999999987532 11221 122332221
Q ss_pred ----cccccC--CCccchHHHHHHHHccCcc---------chhccCchHHHHHHHHHhhcCCCCc---chHHHHHHHHHH
Q 002048 700 ----DSWKRS--SNVPALVRLLQAFLQKVPR---------EIAQEGKLREVLGIFNMLVLSPSTD---EQGFYVLNTIVE 761 (975)
Q Consensus 700 ----~l~~~~--~~l~~~~~~L~~~i~~~~~---------~~~~~~~~~~il~i~~~ll~~~~~~---~~a~~ll~~ii~ 761 (975)
..|... .|+-.++.+++-++..+.. .+.+.+.+..++.+ ++.+.... ..|...+..+++
T Consensus 266 ~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~l---l~~~~~p~~i~~~Al~tla~~ir 342 (651)
T 3grl_A 266 GDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTI---LMATGVPADILTETINTVSEVIR 342 (651)
T ss_dssp CSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHH---HTCSSCCHHHHHHHHHHHHHHHT
T ss_pred CccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHH---HccCCCCHHHHHHHHHHHHHHHh
Confidence 123211 2455578888888887543 22222333333322 33333232 446677777776
Q ss_pred hc
Q 002048 762 SL 763 (975)
Q Consensus 762 ~~ 763 (975)
.-
T Consensus 343 gN 344 (651)
T 3grl_A 343 GC 344 (651)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 93
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=76.35 E-value=1.3e+02 Score=35.72 Aligned_cols=110 Identities=10% Similarity=0.106 Sum_probs=61.3
Q ss_pred HHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCC---HhHHHhHHHHHHHhhcC--CCchHHHH-HHHHHHHHHcccc
Q 002048 469 FTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIP---KIHAFQFFPDLVRFLGA--ESNVVHSY-AASCIEKLLQVKD 542 (975)
Q Consensus 469 l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~---~~~~~~~~~~l~~~L~~--~~~~V~~~-Aa~aL~~~~~~~~ 542 (975)
+...++..+.+ ..+-+...+..++...+..-| .-.++.++.-+...|.. -.-+=|+. |..++..++..-
T Consensus 340 l~p~~~~g~fS----K~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~l- 414 (799)
T 1vsy_4 340 FLNIISLGSQN----KNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFI- 414 (799)
T ss_dssp HHHHHHHHHTC----SSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHH-
T ss_pred HHHHHHHHhCc----CCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHH-
Confidence 33444444555 356667777777777766545 55666677777677665 22222433 344444333221
Q ss_pred CCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh
Q 002048 543 EGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLG 589 (975)
Q Consensus 543 ~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~ 589 (975)
......++++.+++..++.-++-.+-.-.-..+..+..++.
T Consensus 415 ------v~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s 455 (799)
T 1vsy_4 415 ------VMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAA 455 (799)
T ss_dssp ------TTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHH
T ss_pred ------hcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHH
Confidence 12234578999999999988765432112234455555544
No 94
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=76.27 E-value=6.9 Score=38.60 Aligned_cols=125 Identities=13% Similarity=0.126 Sum_probs=83.1
Q ss_pred CcchhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHH
Q 002048 388 SDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQS 467 (975)
Q Consensus 388 ~d~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~ 467 (975)
++.+++|..|..+|..+ . . .+.++.++...+. . .++|+.+|.+-.+++-++... +.... ..-+..
T Consensus 82 ~~~deVR~~Av~lLg~~-~----~-~~~~L~~ir~~va---~--D~~WrVre~lA~a~~~~~~~~--~pe~~--l~~~~~ 146 (240)
T 3l9t_A 82 SDVYQVRMYAVFLFGYL-S----K-DKEILIFMRDEVS---K--DNNWRVQEVLAKAFDEFCKKI--EYKKA--LPIIDE 146 (240)
T ss_dssp CSSHHHHHHHHHHHHHT-T----T-SHHHHHHHHHTGG---G--CSCHHHHHHHHHHHHHHHHHH--CTTTT--HHHHHH
T ss_pred CcchHHHHHHHHHHHhc-c----C-cHHHHHHHHHHhC---C--CCCccHHHHHHHHHHHHHHhc--CHHHH--HHHHHH
Confidence 35689999999977766 2 1 1445566655332 2 467999999888888776411 11100 011233
Q ss_pred HHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccC-CHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHc
Q 002048 468 FFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQI-PKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQ 539 (975)
Q Consensus 468 ~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~-~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~ 539 (975)
| ..+ +++.+|+-|+...--|.... .+.....+++.+-++..|++.=||-.-+.+|+.+..
T Consensus 147 W--------~~d----~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK 207 (240)
T 3l9t_A 147 W--------LKS----SNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISK 207 (240)
T ss_dssp H--------HHC----SSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHT
T ss_pred H--------hcC----CCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Confidence 3 334 57999999987765566542 234566788888888999999999999999987554
No 95
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=67.11 E-value=45 Score=40.27 Aligned_cols=76 Identities=8% Similarity=0.044 Sum_probs=55.0
Q ss_pred CcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHH
Q 002048 484 AFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMT 563 (975)
Q Consensus 484 ~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~ 563 (975)
..+.+|+.|++.+|.....-+ ..+++..+...+.|++.-||..|+.||..+..- ..+...|.+..++.
T Consensus 624 ~d~~VR~gAalALGli~aGn~---~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g---------tnna~~~rva~~l~ 691 (963)
T 4ady_A 624 HNAHVRCGTAFALGIACAGKG---LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQ---------QTEKLNPQVADINK 691 (963)
T ss_dssp SCHHHHHHHHHHHHHHTSSSC---CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT---------CCTTTCTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccCCC---cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcC---------CccccchHHHHHHH
Confidence 468899999999998764322 245666677778888999999999999876543 23455677888888
Q ss_pred HHHHhcCC
Q 002048 564 SLFNAFKF 571 (975)
Q Consensus 564 ~L~~ll~~ 571 (975)
.|.+...+
T Consensus 692 ~L~~~~~d 699 (963)
T 4ady_A 692 NFLSVITN 699 (963)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 88777654
No 96
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=64.14 E-value=66 Score=33.37 Aligned_cols=143 Identities=15% Similarity=0.212 Sum_probs=83.2
Q ss_pred HHHHhhHHHH-HHHHhc---ccccc-hHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCccc---ccc----CCCccchHH
Q 002048 646 AFEASILPSL-QIILQN---DVTEF-LPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDS---WKR----SSNVPALVR 713 (975)
Q Consensus 646 ~l~~~l~P~i-~~il~~---~~~~~-~~~~l~ll~~ll~~~~~~~~~~~~~lf~~l~~~~l---~~~----~~~l~~~~~ 713 (975)
.+.+.++|.+ ..+|.. ...+. -|+++.++++++......+.|....+|..+..+++ -++ ++.-.+...
T Consensus 65 ~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~ 144 (321)
T 1w9c_A 65 MVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFL 144 (321)
T ss_dssp HHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHH
Confidence 3344445444 445532 22222 27899999999988665455555555555444322 112 235567788
Q ss_pred HHHHHHccCccchhcc--CchHHHHHHHHHhhcCCCCc--chHHHHHHHHHHhcch--h----hHhhhHHHHHHHHHHHh
Q 002048 714 LLQAFLQKVPREIAQE--GKLREVLGIFNMLVLSPSTD--EQGFYVLNTIVESLEY--G----VIAQFVPHIWGVLFTRL 783 (975)
Q Consensus 714 ~L~~~i~~~~~~~~~~--~~~~~il~i~~~ll~~~~~~--~~a~~ll~~ii~~~~~--~----~~~~~l~~il~~~l~~L 783 (975)
+|++....+.+.++.- +....+++.+--.+.+...+ ..|++++..++.++.. + .++.|.-.+++.++.-+
T Consensus 145 LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~Vl 224 (321)
T 1w9c_A 145 LLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVV 224 (321)
T ss_dssp HHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888877753 23344444444444443333 4588888888888742 1 22455566666666666
Q ss_pred hcCch
Q 002048 784 QNKRT 788 (975)
Q Consensus 784 ~~~~~ 788 (975)
.+..+
T Consensus 225 TDs~H 229 (321)
T 1w9c_A 225 TDTSH 229 (321)
T ss_dssp HSSSC
T ss_pred hCchh
Confidence 65443
No 97
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=64.06 E-value=2.4e+02 Score=33.59 Aligned_cols=117 Identities=13% Similarity=0.125 Sum_probs=67.2
Q ss_pred hHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCC--CCchh-hHHHHH
Q 002048 506 IHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKF--PESEE-NQYIMK 582 (975)
Q Consensus 506 ~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~--~~~~~-~~~l~~ 582 (975)
.....+.|.++..+.+.+..|..++..|++.++... +....=.+|.+++.+...|+. ..+.. ....++
T Consensus 335 ~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~---------P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~ 405 (799)
T 1vsy_4 335 EIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELD---------PSNAYLIYDKILIDLYDTLADQFINSRHRIISSLK 405 (799)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTC---------CTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcC---------CCccceehHHHHHHHHHHhccccccchhHHHHHHH
Confidence 345667788888899999999999999999987652 311122477888888888877 44321 123344
Q ss_pred HHHHHHh-h-c-cchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHh
Q 002048 583 CIMRVLG-V-A-EISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRA 636 (975)
Q Consensus 583 ~l~~vi~-~-~-~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~ 636 (975)
++..++. + . ....++...++..+.+- =+++|+.=...++..+..+...+
T Consensus 406 ~l~~~~r~lv~~~~yr~hl~~lL~l~Lpg-----ID~ND~~KT~~tl~fi~~i~s~i 457 (799)
T 1vsy_4 406 QFTRVIRFIVMDKLYRVHITNVLSMLVSK-----LDMNDTNLTSNLINGIVSIAAFI 457 (799)
T ss_dssp HHHTTHHHHTTSTTGGGHHHHHHHHHHHT-----CCSSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHhcc-----CCcccHHHHHHHHHHHHHHHHhc
Confidence 4444444 2 2 22222322232222221 15556544455666666666544
No 98
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=63.51 E-value=59 Score=31.05 Aligned_cols=123 Identities=15% Similarity=0.145 Sum_probs=64.2
Q ss_pred cchHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCccccccCCC--c-cchHHHHHHHHccCccchhccCchHHHHHHHHH
Q 002048 665 EFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKRSSN--V-PALVRLLQAFLQKVPREIAQEGKLREVLGIFNM 741 (975)
Q Consensus 665 ~~~~~~l~ll~~ll~~~~~~~~~~~~~lf~~l~~~~l~~~~~~--l-~~~~~~L~~~i~~~~~~~~~~~~~~~il~i~~~ 741 (975)
..+.+.+++..+++.|..-.+.|.+.+++|+++...+-..-+. + .....++.....+..+.. ++....+...+.+
T Consensus 61 ~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y--~~L~~RI~~tl~k 138 (196)
T 4atg_A 61 EVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSY--KTLAPRVLKTLKG 138 (196)
T ss_dssp HHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTS--TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccC--chHHHHHHHHHHH
Confidence 3567889999999999765688999999999988754332221 1 112222332222222111 1234566677776
Q ss_pred hhcCCCCc-chHHHHHHHHHHhcchhhHhhhHHHHHHHHHHHhhcCchhh
Q 002048 742 LVLSPSTD-EQGFYVLNTIVESLEYGVIAQFVPHIWGVLFTRLQNKRTVK 790 (975)
Q Consensus 742 ll~~~~~~-~~a~~ll~~ii~~~~~~~~~~~l~~il~~~l~~L~~~~~~~ 790 (975)
.+.++... ..-...+.. +..++.+.+..++=+-++....++.+.|...
T Consensus 139 ~l~dp~~~l~t~YGAi~G-L~~lG~~~vr~~llP~l~~~~~~~~~~~~~~ 187 (196)
T 4atg_A 139 VWMDPNRSEDSQYGALYC-LSILSKNVVNTVIREHAEEYKRTIGKKKVTN 187 (196)
T ss_dssp HHTCTTSCHHHHHHHHHH-HHHHCHHHHHTHHHHHHHHHHHHTCCHHHHH
T ss_pred HHcCCCCChHHHHHHHHH-HHHhHHHHHHHhhhcCHHHHHHHHHHHHHHH
Confidence 66543322 111112222 2244445555555344455555555544433
No 99
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=63.39 E-value=58 Score=35.69 Aligned_cols=56 Identities=20% Similarity=0.339 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHh-----CCCCCchhHHHHHHHHHHHHHhhh--cCcchHHHHHHhhHHHHHHH
Q 002048 603 SGLTSILNEVCK-----NPKSPIFNHYLFESVAVLVRRACQ--RDPSLISAFEASILPSLQII 658 (975)
Q Consensus 603 ~~L~~~l~~~~~-----~~~~~~~~~~~~e~l~~li~~~~~--~~~~~~~~l~~~l~P~i~~i 658 (975)
+.|+.++.+.+. +|+|+.....++.|+..-+-..+. .+...+.-+...++|.+..+
T Consensus 214 qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L 276 (507)
T 3u0r_A 214 QQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTL 276 (507)
T ss_dssp HHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCC
T ss_pred HHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhc
Confidence 445554544432 455665556677777655444422 12234555666777765543
No 100
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=62.81 E-value=1e+02 Score=37.32 Aligned_cols=19 Identities=11% Similarity=0.024 Sum_probs=12.6
Q ss_pred hcCCChHHHHHHHHHHHHH
Q 002048 18 TLSPSPEPRRAAERSLAEM 36 (975)
Q Consensus 18 tls~d~~~r~~AE~~L~~~ 36 (975)
.-.+|++.|.-|=+.|..+
T Consensus 24 L~e~~~~lk~~aL~~l~~~ 42 (963)
T 4ady_A 24 LRENQDSVKTYALESINNV 42 (963)
T ss_dssp TTSSCHHHHHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHH
Confidence 3347777777777776654
No 101
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=62.57 E-value=80 Score=31.16 Aligned_cols=63 Identities=14% Similarity=0.191 Sum_probs=44.1
Q ss_pred cccCCCCCCCcchhHhhHHHHHHHhhccC--CHhH--HHhHHHHHHHhhcCCCchHHHHHHHHHHHHHc
Q 002048 475 PELQSPDVNAFPMLKAGALKFFTMFRIQI--PKIH--AFQFFPDLVRFLGAESNVVHSYAASCIEKLLQ 539 (975)
Q Consensus 475 p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~--~~~~--~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~ 539 (975)
..|.+++ ..+-++..|++.+...+..- .+.. -...+|.++..|.+++..||..|+.||..+..
T Consensus 15 ~lL~s~~--~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~ 81 (233)
T 3tt9_A 15 SMLEADH--MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVF 81 (233)
T ss_dssp HTCCSSC--CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHhCCCC--chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 3455532 22367888888887654322 1122 23468999999999999999999999999875
No 102
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=61.97 E-value=83 Score=35.33 Aligned_cols=174 Identities=11% Similarity=0.098 Sum_probs=90.8
Q ss_pred CCCchhHHHHHHHHHHHHhhhcCCCccc--cCcccHHHHHHHhc-c---cccCCCCCCCcchhHhhHHHHHHHhhccCCH
Q 002048 432 VANWKDKDCAIYLVVSLATKKAGSTSIS--TDLVDVQSFFTSVI-V---PELQSPDVNAFPMLKAGALKFFTMFRIQIPK 505 (975)
Q Consensus 432 ~~~w~~keaal~~ig~ia~~~~~g~~~~--~~~~~~~~~l~~~v-~---p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~ 505 (975)
++.|..|.||-.++..+-..-..|.... ... |+---+.-++ + .++.+.. .-.-+|-.|+..+|.- .++++
T Consensus 185 dp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDq--VVAPVRETaAQtLGaL-~hLp~ 260 (800)
T 3oc3_A 185 SYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDR--TVAPVRDAAAYLLSRI-YPLIG 260 (800)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSS--CBCHHHHHHHHHHHHH-TTTSC
T ss_pred CcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCe--eeeehHHHHHHHHHHH-HhCCh
Confidence 4578888888777776643321121111 011 3222211111 1 2222221 3456899999999988 77776
Q ss_pred hHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 002048 506 IHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIM 585 (975)
Q Consensus 506 ~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~ 585 (975)
+ ..++..++..++.+.=-||-.+-..|+-+ .+ .+. -++.++..++..+++.+.+ +..+..
T Consensus 261 e--~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~D----------LL~-~Ld~Vv~aVL~GL~D~DDD----VRAVAA 320 (800)
T 3oc3_A 261 P--NDIIEQLVGFLDSGDWQVQFSGLIALGYL---KE----------FVE-DKDGLCRKLVSLLSSPDED----IKLLSA 320 (800)
T ss_dssp S--CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---GG----------GCC-CHHHHHHHHHHHTTCSSHH----HHHHHH
T ss_pred h--HHHHHHHHhhcCCCCeeehhhhHHHHHHH---HH----------HHH-HHHHHHHHHHhhcCCcccH----HHHHHH
Confidence 6 45555555556667788888888888865 21 111 1778888888877776432 222222
Q ss_pred HHHh-hccchhhhHHHHHHHHHHHHHHHHhCCCCCch-hHHHHHHHHHHHHH
Q 002048 586 RVLG-VAEISNEVAAPCISGLTSILNEVCKNPKSPIF-NHYLFESVAVLVRR 635 (975)
Q Consensus 586 ~vi~-~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~-~~~~~e~l~~li~~ 635 (975)
.++. +. .| .-+..+...+|....+-+|-.. ...+++.++.++..
T Consensus 321 etLiPIA---~p---~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~ 366 (800)
T 3oc3_A 321 ELLCHFP---IT---DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRE 366 (800)
T ss_dssp HHHTTSC---CS---STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHH
T ss_pred HHhhhhc---ch---hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcC
Confidence 2222 22 11 1134444445555555544222 34566666665554
No 103
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=60.18 E-value=75 Score=35.09 Aligned_cols=139 Identities=16% Similarity=0.111 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHhc-C---------CChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCC
Q 002048 8 LQHLSQCFLHTLSPSPEPRRAAERSLAEMAD-R---------PNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAP 77 (975)
Q Consensus 8 ~~~l~~~L~~tls~d~~~r~~AE~~L~~~~~-~---------p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~ 77 (975)
.+.+++.|. ++|..++..|-..|..+.. . .|....|.+++.++ +..++..|+-.|+|....
T Consensus 4 l~~lv~~L~---s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~--~~~~~~~A~~aL~nLa~~---- 74 (457)
T 1xm9_A 4 IPKAVQYLS---SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP--NQNVQQAAAGALRNLVFR---- 74 (457)
T ss_dssp HHHHHHHHH---SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSS--CHHHHHHHHHHHHHHHSS----
T ss_pred HHHHHHHHC---CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhcC----
Confidence 455666664 5788899999999998764 2 35567777777753 678899999999987652
Q ss_pred CCCCCCCCCcCCCCHHHHHHHHH-----HHHHHHh-cCCHHHHHHHHHHHHHHhcccCCCC--CCchHHHHHHHhc----
Q 002048 78 ASDRNSGPTLAPILDAEKDQIKS-----LIVGLML-TSTPRIQSQLSEALVVVGNHDFPKH--WPTLLPELIANLK---- 145 (975)
Q Consensus 78 ~~~~~~~~~~~~i~~e~K~~Ir~-----~ll~~l~-~~~~~ir~qla~~i~~Ia~~D~P~~--Wp~Ll~~l~~~l~---- 145 (975)
+++.|..|.+ .|++.|. +.+..++.+.+.++..++..+-... ..+.+|.|++++.
T Consensus 75 -------------~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s 141 (457)
T 1xm9_A 75 -------------STTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFS 141 (457)
T ss_dssp -------------CHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHH
T ss_pred -------------CHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhcccc
Confidence 2556777754 6777776 5567899999999999998732210 1157788888883
Q ss_pred ----cccc----CCChhHHhHHHHHHHHHHH
Q 002048 146 ----DAAQ----SNNYVSINGILGTANSIFK 168 (975)
Q Consensus 146 ----~~~~----~~d~~~~~~~L~~l~~i~k 168 (975)
++.. ..+......+..+|..++.
T Consensus 142 ~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~ 172 (457)
T 1xm9_A 142 GWCDGNSNMSREVVDPEVFFNATGCLRNLSS 172 (457)
T ss_dssp TCC---------CCCHHHHHHHHHHHHHHTT
T ss_pred ccccCccchhcccccHHHHHHHHHHHHHHcc
Confidence 2100 0133444567777777765
No 104
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=59.58 E-value=1.9e+02 Score=30.94 Aligned_cols=169 Identities=14% Similarity=0.213 Sum_probs=88.3
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhh
Q 002048 560 VLMTSLFNAFKFPESEENQYIMKCIMRVLG-VAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQ 638 (975)
Q Consensus 560 ~il~~L~~ll~~~~~~~~~~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~ 638 (975)
..+.+|+.+++..+..|.+++...+-++.. +- ...++.. ..+..++-+..-+...+.-...++|+++.+++...-
T Consensus 174 ~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~-~~R~~Ir---k~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~ 249 (392)
T 2jak_A 174 KFVLQLLELFDSEDPRERDFLKTTLHRIYGKFL-GLRAYIR---KQINNIFYRFIYETEHHNGIAELLEILGSIINGFAL 249 (392)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCG-GGHHHHH---HHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHH-HHHHHHH---HHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCC
Confidence 467788888888776677777766666644 32 2233332 222233333332222222245799999999988621
Q ss_pred cCcchHHH-HHHhhHHHHHHHHhcccccchHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCccccccCC------Cccch
Q 002048 639 RDPSLISA-FEASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKRSS------NVPAL 711 (975)
Q Consensus 639 ~~~~~~~~-l~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~~~~~~~~~~~~lf~~l~~~~l~~~~~------~l~~~ 711 (975)
.-.+.... +...++|+... +....|-+....++..+++.-++ +...+. ..+++ -|--.. ++..+
T Consensus 250 PLKeehk~Fl~~vLlPLhk~---~~l~~y~~qL~ycv~qf~eKDp~-L~~~vi---~~LLk--~WP~tns~KevlFL~el 320 (392)
T 2jak_A 250 PLKEEHKIFLLKVLLPLHKV---KSLSVYHPQLAYCVVQFLEKDST-LTEPVV---MALLK--YWPKTHSPKEVMFLNEL 320 (392)
T ss_dssp SCCHHHHHHHHHTTGGGGTS---GGGGGTHHHHHHHHHHHHHHCGG-GHHHHH---HHHHH--SSCSSCCTTHHHHHHHH
T ss_pred CCcHHHHHHHHHHhHhhccC---CcHHHhHHHHHHHHHHHHhcCch-hHHHHH---HHHHH--hCCCCCchHHHHHHHHH
Confidence 11223333 45566665543 12223444445555666666554 444333 22332 242111 33333
Q ss_pred HHHHHHHHccCccchhccCchHHHHHHHHHhhcCC
Q 002048 712 VRLLQAFLQKVPREIAQEGKLREVLGIFNMLVLSP 746 (975)
Q Consensus 712 ~~~L~~~i~~~~~~~~~~~~~~~il~i~~~ll~~~ 746 (975)
.++|+ ...+++|.. ...+++..+.+++++.
T Consensus 321 eeiLe---~~~~~~f~~--i~~~lF~~la~ci~S~ 350 (392)
T 2jak_A 321 EEILD---VIEPSEFVK--IMEPLFRQLAKCVSSP 350 (392)
T ss_dssp HHHHH---TCCHHHHHH--HHHHHHHHHHHHHTCS
T ss_pred HHHHH---hCCHHHHHH--HHHHHHHHHHHHHcCC
Confidence 33332 224556654 5788899999998864
No 105
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=57.29 E-value=64 Score=30.80 Aligned_cols=123 Identities=15% Similarity=0.221 Sum_probs=72.6
Q ss_pred HhhHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHhh-chhhhhhcccCCCchhhHHHHhhcccCCCChhhHHHHhhCH
Q 002048 299 QGYLNDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNV-STSVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNY 377 (975)
Q Consensus 299 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~fl~~~-~~~~~~~~~~~~~~l~~l~~~li~~~l~l~~~d~e~we~dp 377 (975)
.+.+|.|++.+.+-+...- +.-......++...+. ..+.. +- .+++.+++..++.=.+ +
T Consensus 39 ~~LlPyf~~fI~~~v~~nl---~~l~~L~~lm~~~~ALl~N~~l---~l-epYlH~LipsvLtCll--~----------- 98 (196)
T 4atg_A 39 QQLVPYFIQHISELILKSF---KEAEVLKTCIALYFSLIKNKHV---FI-DPYLHQILPSLLTCVI--G----------- 98 (196)
T ss_dssp TTTHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHHHCTTC---CC-GGGHHHHHHHHHHHHH--C-----------
T ss_pred hhhHHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHHHcCCCC---Ch-HHHHHHHHHHHHHHHH--h-----------
Confidence 3556666666666554321 1234556777777777 54432 21 5677777665441111 0
Q ss_pred HHHHhhcCCCCcchhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHh
Q 002048 378 VEFIRRDMEGSDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLAT 450 (975)
Q Consensus 378 ~efv~~~~d~~d~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~ 450 (975)
+.+.. + ..|.-|++++..+|++|+... +.+..-+...+...-.+|.......+||+..+.+++.
T Consensus 99 -----k~l~~-~--~LRd~AA~lL~~I~~~~~~~y-~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~ 162 (196)
T 4atg_A 99 -----KSIVD-D--DVRKMSADIVKYIYDTYSRSY-KTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK 162 (196)
T ss_dssp -----TTCCC-H--HHHHHHHHHHHHHHHHHTTTS-TTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH
T ss_pred -----cccCH-H--HHHHHHHHHHHHHHHHhCccC-chHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH
Confidence 01111 1 689999999999999987533 2333444444444334566678889999988888753
No 106
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=57.24 E-value=21 Score=42.10 Aligned_cols=57 Identities=12% Similarity=-0.070 Sum_probs=42.3
Q ss_pred CcchhHhhHHHHHHHhhccCC--H-hHHHhHHHH-HHHhhcCCCchHHHHHHHHHHHHHcc
Q 002048 484 AFPMLKAGALKFFTMFRIQIP--K-IHAFQFFPD-LVRFLGAESNVVHSYAASCIEKLLQV 540 (975)
Q Consensus 484 ~~~~Lr~ra~~~l~~f~~~~~--~-~~~~~~~~~-l~~~L~~~~~~V~~~Aa~aL~~~~~~ 540 (975)
+.+-.|..||+.++.....-+ + -....++.. +..+|.|++..||..|+.||++++..
T Consensus 46 ~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 46 PDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp SCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 467899999999999875211 1 123345554 45678999999999999999998754
No 107
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=56.75 E-value=50 Score=38.83 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=24.8
Q ss_pred hHHHHHHHhhcCCCchHHHHHHHHHHHHHcc
Q 002048 510 QFFPDLVRFLGAESNVVHSYAASCIEKLLQV 540 (975)
Q Consensus 510 ~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~ 540 (975)
++.| +++.|++++..+|..||.||..++..
T Consensus 35 ~i~P-ll~~L~S~~~~~r~~A~~al~~l~~~ 64 (684)
T 4gmo_A 35 KILP-VLKDLKSPDAKSRTTAAGAIANIVQD 64 (684)
T ss_dssp TTHH-HHHHHSSSCCSHHHHHHHHHHHHTTS
T ss_pred hHHH-HHHHcCCCCHHHHHHHHHHHHHHHcC
Confidence 3444 55779999999999999999999864
No 108
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=48.97 E-value=1.7e+02 Score=30.29 Aligned_cols=98 Identities=9% Similarity=0.105 Sum_probs=57.8
Q ss_pred HHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHH-hCC-CCCchhHHHHHHHHHHHHHhhhcCcchHHHHH----Hhh
Q 002048 579 YIMKCIMRVLG-VAEISNEVAAPCISGLTSILNEVC-KNP-KSPIFNHYLFESVAVLVRRACQRDPSLISAFE----ASI 651 (975)
Q Consensus 579 ~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~~l~~~~-~~~-~~~~~~~~~~e~l~~li~~~~~~~~~~~~~l~----~~l 651 (975)
.++.+...++. +++.+.|+.+.+++.+....-... +|- +-|.++...+..+.++.... ....-.+- ..+
T Consensus 93 eVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~c----F~al~~lp~~~fklv 168 (321)
T 1w9c_A 93 EVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHC----FPAFLAIPPTQFKLV 168 (321)
T ss_dssp HHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHC----TTHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHh----HHHHHcCCHHHHHHH
Confidence 46677777788 999999999999988886443444 443 34777777777777666542 11111111 122
Q ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHh
Q 002048 652 LPSLQIILQNDVTEFLPYAFQLLAQLIEL 680 (975)
Q Consensus 652 ~P~i~~il~~~~~~~~~~~l~ll~~ll~~ 680 (975)
+-.+.-.+.....+..+-+++++..++++
T Consensus 169 idsiiWa~kH~~r~V~e~gL~il~~ll~n 197 (321)
T 1w9c_A 169 LDSIIWAFKHTMRNVADTGLQILFTLLQN 197 (321)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 22222333444445666677777666655
No 109
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=48.05 E-value=2.2e+02 Score=32.69 Aligned_cols=138 Identities=15% Similarity=0.130 Sum_probs=77.7
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHh
Q 002048 393 RRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSV 472 (975)
Q Consensus 393 ~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~ 472 (975)
=|++|..=|+++++.|+..+...-+..+.+.|+.. .+|--.-.++|-.+..+-. ..+.. +-. .
T Consensus 38 DRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d----~~D~e~v~~~LetL~~l~~--~~~~~------~~~-----~ 100 (651)
T 3grl_A 38 DRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTD----RSDSEIIGYALDTLYNIIS--NDEEE------EVE-----E 100 (651)
T ss_dssp HHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSC----TTCHHHHHHHHHHHHHHHC--CC------------------
T ss_pred HHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcc----cccHHHHHHHHHHHHHHhC--CCCcc------ccc-----c
Confidence 47788888999999998877666566666666532 1233333333333322211 01000 000 0
Q ss_pred cccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccc
Q 002048 473 IVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSA 552 (975)
Q Consensus 473 v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~ 552 (975)
.++ +-...-+.|+...|... .+-++.++.+|+..+.-||.+|...|..++..+. +
T Consensus 101 -----~~~-----~~~~~~~~~~~d~f~~~------~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~---------~ 155 (651)
T 3grl_A 101 -----NST-----RQSEDLGSQFTEIFIKQ------QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLG---------P 155 (651)
T ss_dssp -----------------CHHHHHHHHHHHS------THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSH---------H
T ss_pred -----ccc-----ccchHHHHHHHHHHHcC------CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCc---------H
Confidence 000 00111245555555322 4567889999999999999999999999987642 2
Q ss_pred cccchHH---HHHHHHHHhcCCC
Q 002048 553 DITPYLS---VLMTSLFNAFKFP 572 (975)
Q Consensus 553 ~l~p~l~---~il~~L~~ll~~~ 572 (975)
..+..+. .-+..|+.+|++.
T Consensus 156 ~~Q~~Il~~p~gi~~Lv~lL~d~ 178 (651)
T 3grl_A 156 QVQQIILVSPMGVSRLMDLLADS 178 (651)
T ss_dssp HHHHHHHHSTTHHHHHHGGGGCS
T ss_pred HHHHHHHhCcccHHHHHHHHhCc
Confidence 2333332 4677888888764
No 110
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=47.38 E-value=2.9e+02 Score=29.55 Aligned_cols=113 Identities=16% Similarity=0.130 Sum_probs=72.2
Q ss_pred chHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCcccccc---CCCccchHHHHHHHHccCccchhccCchHHHHHHHHHh
Q 002048 666 FLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKR---SSNVPALVRLLQAFLQKVPREIAQEGKLREVLGIFNML 742 (975)
Q Consensus 666 ~~~~~l~ll~~ll~~~~~~~~~~~~~lf~~l~~~~l~~~---~~~l~~~~~~L~~~i~~~~~~~~~~~~~~~il~i~~~l 742 (975)
=+.+.++++++++.+-..|+.+....++-.++-| +... ..|-+.+..|+..|+.++|.-. ..++.-+-+.
T Consensus 187 GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlP-LHk~~~~~~y~~qL~ycv~qf~eKDp~L~------~~vi~~LLk~ 259 (403)
T 3fga_B 187 GIAELLEILGSIINGFALPLKEEHKIFLLKVLLP-LHKVKSLSVYHPQLAYCVVQFLEKDSTLT------EPVVMALLKY 259 (403)
T ss_dssp THHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTG-GGGSTTGGGTHHHHHHHHHHHHHHCGGGH------HHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHH-HHcCCcchhhHHHHHHHHHHHHHhCchhH------HHHHHHHHHh
Confidence 4567888888888887666877777665555544 2222 2367899999999999988542 2223221122
Q ss_pred hcCCCC-c--chHHHHHHHHHHhcchhhHhhhHHHHHHHHHHHhhcC
Q 002048 743 VLSPST-D--EQGFYVLNTIVESLEYGVIAQFVPHIWGVLFTRLQNK 786 (975)
Q Consensus 743 l~~~~~-~--~~a~~ll~~ii~~~~~~~~~~~l~~il~~~l~~L~~~ 786 (975)
= +..+ . .--++-++.++..++.+.+...+..+++.+...+.+.
T Consensus 260 W-P~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~ 305 (403)
T 3fga_B 260 W-PKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSP 305 (403)
T ss_dssp C-CSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCS
T ss_pred C-CCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 1 2222 1 2234667888888876677777777777777776664
No 111
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=44.91 E-value=3.9e+02 Score=30.32 Aligned_cols=392 Identities=13% Similarity=0.062 Sum_probs=180.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcccCCCCC----CchHHHHHHHhcccccCCChhHHhHHHHHHHHHHHhhhccccc
Q 002048 101 LIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHW----PTLLPELIANLKDAAQSNNYVSINGILGTANSIFKKFRYQFKT 176 (975)
Q Consensus 101 ~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P~~W----p~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i~k~~~~~~~~ 176 (975)
.+++.|.+.+..++...+.++..++..+-+... -..+|.|+++|.++ +......|..+|..+... .+
T Consensus 52 ~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~----~~~vq~~Aa~AL~nLa~~-----~~ 122 (584)
T 3l6x_A 52 EVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP----KKEVHLGACGALKNISFG-----RD 122 (584)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCS----SHHHHHHHHHHHHHHTSS-----SC
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCC----CHHHHHHHHHHHHHHHcc-----CC
Confidence 356677777778998899999999975432211 35789999999998 888888899999888641 01
Q ss_pred hhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhcccCCC-chHH-HHhHHHHHHH
Q 002048 177 NDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQEL-PEFF-EDHMREWMTE 254 (975)
Q Consensus 177 ~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~~~l-p~~~-~~~~~~~~~~ 254 (975)
++.+..+. -....|+|..++.. +.+...... +..+++.+...+- ...+ ...+ +.
T Consensus 123 ~~nk~~I~--~~GaIp~LV~LL~s-----------~~~~~~~e~-------aa~aL~nLS~~~~~k~~I~~~al----p~ 178 (584)
T 3l6x_A 123 QDNKIAIK--NCDGVPALVRLLRK-----------ARDMDLTEV-------ITGTLWNLSSHDSIKMEIVDHAL----HA 178 (584)
T ss_dssp HHHHHHHH--HTTHHHHHHHHHHH-----------CCSHHHHHH-------HHHHHHHHTTSGGGHHHHHHHTH----HH
T ss_pred HHHHHHHH--HcCCHHHHHHHHcC-----------CCCHHHHHH-------HHHHHHHHhCCchhhHHHHhccH----HH
Confidence 22222211 12344555555432 122221222 2233344432221 1111 2233 33
Q ss_pred HHHHhcccCCcccC-C-CC---cCchHHHHHHHHHHHHHHHHHHhH---HHHHhhHHHHHHHHHHHHhcc-CCCCcchHH
Q 002048 255 FKKYLTTNYPALES-T-SD---GLGLVDGLRAAVCENISLYMKMNE---EEFQGYLNDFALAVWTLLGNV-SQSSSRDSL 325 (975)
Q Consensus 255 ~~~~l~~~~~~l~~-~-~~---~~~~~~~~k~~~~~~l~~~~~~~~---~~f~~~~~~~~~~~~~~l~~~-~~~~~~~~~ 325 (975)
+.+++..+.....+ . ++ ....+.+++..+..+|..+....+ ..+... ...+.....++... ......++.
T Consensus 179 Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~-~Gli~~LV~~L~~~~~~~~~~~~~ 257 (584)
T 3l6x_A 179 LTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLREC-DGLVDALIFIVQAEIGQKDSDSKL 257 (584)
T ss_dssp HHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHS-TTHHHHHHHHHHHHHHTTCCSCHH
T ss_pred HHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHc-CCcHHHHHHHHHHhhcccCccHHH
Confidence 33332110000000 0 00 011124666666666665543222 222110 12233344443321 111123455
Q ss_pred HHHHHHHHHhhchhhhhhcccCCCchhhHHHH-hhcccCCCChhhH-HHHhhCHHH-HHhhcCCCCcchhhhHHHHHHHH
Q 002048 326 AVTAIKFLTNVSTSVHHTLFAGEGVIPQICQN-IVIPNVRLRDEDE-ELFEMNYVE-FIRRDMEGSDVDTRRRIACELLK 402 (975)
Q Consensus 326 ~~~~l~fl~~~~~~~~~~~~~~~~~l~~l~~~-li~~~l~l~~~d~-e~we~dp~e-fv~~~~d~~d~~s~R~~A~~ll~ 402 (975)
+..|+--|..++.......- +...+.+.... -.-| +......+ .+|+..-.. |+.- +..+.....+.+|...|.
T Consensus 258 ~enav~aL~NLs~~~~~e~~-~~~~~~~~~~~~~~~~-~~~~~~Gve~L~~~~~v~~Ll~L-L~~s~~~~v~E~Aa~AL~ 334 (584)
T 3l6x_A 258 VENCVCLLRNLSYQVHREIP-QAERYQEAAPNVANNT-GTSPARGYELLFQPEVVRIYISL-LKESKTPAILEASAGAIQ 334 (584)
T ss_dssp HHHHHHHHHHHHTTHHHHST-TCCC---------------CCCCGGGGGGSHHHHHHHHHH-HHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccccc-chhhhhhhcccccccc-cccCchhHHHHhcccHHHHHHHH-HccCCCHHHHHHHHHHHH
Confidence 55555555554100111110 00001000000 0000 01111111 223222111 1111 111223556777888888
Q ss_pred HHHHHhh---hh---hH--HHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcc
Q 002048 403 GIATHYR---QH---VM--ETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIV 474 (975)
Q Consensus 403 ~L~~~~~---~~---~~--~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~ 474 (975)
.|+.... .. .+ ...+..+..+|. +.+...+++|..+++.++.... . ...+..-....++
T Consensus 335 nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~------s~~~~v~~~A~~aL~nLs~~~~--~-----~~~I~~g~ip~LV 401 (584)
T 3l6x_A 335 NLCAGRWTYGRYIRSALRQEKALSAIADLLT------NEHERVVKAASGALRNLAVDAR--N-----KELIGKHAIPNLV 401 (584)
T ss_dssp HHHSSCSHHHHHHHHHHTSHHHHHHHHHGGG------CSCHHHHHHHHHHHHHHHTTCS--C-----HHHHHHHHHHHHH
T ss_pred HHHcCCccccHHHHHHHHHcCcHHHHHHHHc------CCCHHHHHHHHHHHHHHhCChh--H-----HHHHHhCCHHHHH
Confidence 8874321 11 10 122344444443 3456888889999999975321 0 1112222222333
Q ss_pred cccCCCCCC----CcchhHhhHHHHHHHhhccCC--HhH--HHhHHHHHHHhhcCC--CchHHHHHHHHHHHHHcccc
Q 002048 475 PELQSPDVN----AFPMLKAGALKFFTMFRIQIP--KIH--AFQFFPDLVRFLGAE--SNVVHSYAASCIEKLLQVKD 542 (975)
Q Consensus 475 p~l~~~~~~----~~~~Lr~ra~~~l~~f~~~~~--~~~--~~~~~~~l~~~L~~~--~~~V~~~Aa~aL~~~~~~~~ 542 (975)
..|.+.+.. ...-++..||+.++.....-+ ... -...++.++++|.+. ...++-.|+.+|..+..+++
T Consensus 402 ~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e 479 (584)
T 3l6x_A 402 KNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479 (584)
T ss_dssp HTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred HHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence 334432100 134567789999987643211 111 234789999999875 77888899999999887654
No 112
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=40.43 E-value=3.7e+02 Score=28.68 Aligned_cols=114 Identities=16% Similarity=0.141 Sum_probs=75.1
Q ss_pred cchHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCcccccc---CCCccchHHHHHHHHccCccchhccCchHHHHHHHHH
Q 002048 665 EFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKR---SSNVPALVRLLQAFLQKVPREIAQEGKLREVLGIFNM 741 (975)
Q Consensus 665 ~~~~~~l~ll~~ll~~~~~~~~~~~~~lf~~l~~~~l~~~---~~~l~~~~~~L~~~i~~~~~~~~~~~~~~~il~i~~~ 741 (975)
.=+.+.++++.+++..-..|+.+....++-.++-|. -+. ..|-+.+..|+..|+.+++.-. ..++.-+-+
T Consensus 231 ~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPL-hk~~~l~~y~~qL~ycv~qf~eKDp~L~------~~vi~~LLk 303 (392)
T 2jak_A 231 NGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPL-HKVKSLSVYHPQLAYCVVQFLEKDSTLT------EPVVMALLK 303 (392)
T ss_dssp SCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGG-GTSGGGGGTHHHHHHHHHHHHHHCGGGH------HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhh-ccCCcHHHhHHHHHHHHHHHHhcCchhH------HHHHHHHHH
Confidence 446789999999999977668888776655554442 221 2367888999999999987542 233322222
Q ss_pred hhcCCC-C--cchHHHHHHHHHHhcchhhHhhhHHHHHHHHHHHhhcC
Q 002048 742 LVLSPS-T--DEQGFYVLNTIVESLEYGVIAQFVPHIWGVLFTRLQNK 786 (975)
Q Consensus 742 ll~~~~-~--~~~a~~ll~~ii~~~~~~~~~~~l~~il~~~l~~L~~~ 786 (975)
.= +.. + +..-++-++.++..++.+.+...+..+++.+...+.+.
T Consensus 304 ~W-P~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~ 350 (392)
T 2jak_A 304 YW-PKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSP 350 (392)
T ss_dssp SS-CSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCS
T ss_pred hC-CCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 21 222 2 22334668889988877777778888887777776653
No 113
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=38.23 E-value=96 Score=32.29 Aligned_cols=127 Identities=9% Similarity=0.220 Sum_probs=74.9
Q ss_pred hhHHHHHHhhcCccccccCCCccchHHHHHHHHccCcc---chhccCchHHHHHHHHHhhcCCCC--cchHHHHHHHHHH
Q 002048 687 SNYMQIFNLLLSPDSWKRSSNVPALVRLLQAFLQKVPR---EIAQEGKLREVLGIFNMLVLSPST--DEQGFYVLNTIVE 761 (975)
Q Consensus 687 ~~~~~lf~~l~~~~l~~~~~~l~~~~~~L~~~i~~~~~---~~~~~~~~~~il~i~~~ll~~~~~--~~~a~~ll~~ii~ 761 (975)
+.+|.+|..+-.+. | +....++..++..+.++.. +|+.. ..+.+++-+.+++.+.+. ...+.+||+.++.
T Consensus 164 ~~f~~fF~yv~~~~-F---diasDAf~TfkelLt~Hk~lvaefL~~-nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLl 238 (341)
T 1upk_A 164 EQFYDFFRYVEMST-F---DIASDAFATFKDLLTRHKLLSAEFLEQ-HYDRFFSEYEKLLHSENYVTKRQSLKLLGELLL 238 (341)
T ss_dssp GGGGHHHHHTTCSS-H---HHHHHHHHHHHHHHHSSHHHHHHHHHH-THHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC-c---hHHHHHHHHHHHHHhccHHHHHHHHHH-hHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHh
Confidence 46777776554422 2 2334445556666666543 44443 467788889999987654 4678999999998
Q ss_pred hcch-hhHhhhH--HHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHhChHHHHHHHhhh
Q 002048 762 SLEY-GVIAQFV--PHIWGVLFTRLQNKRTVKFVKSLLIFMSLFLVKHGPENLVNTMNAV 818 (975)
Q Consensus 762 ~~~~-~~~~~~l--~~il~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~L~~~ 818 (975)
.=.. .....|+ +.-++.++.-|.+....-....|-++=.+.+.-..|..+.++|-..
T Consensus 239 dr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~N 298 (341)
T 1upk_A 239 DRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKN 298 (341)
T ss_dssp SGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHT
T ss_pred CchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHH
Confidence 6321 2334566 6778888888876543333344443333333223456666666443
No 114
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=32.31 E-value=33 Score=30.79 Aligned_cols=46 Identities=9% Similarity=-0.014 Sum_probs=35.1
Q ss_pred HHHHHhcc--cCCCC-CCchHHHHHHHhcccccCCChhHHhHHHHHHHHHHHh
Q 002048 120 ALVVVGNH--DFPKH-WPTLLPELIANLKDAAQSNNYVSINGILGTANSIFKK 169 (975)
Q Consensus 120 ~i~~Ia~~--D~P~~-Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i~k~ 169 (975)
.+..||+. ++|.+ |.++++.|...++.. +++++.-+|++|..+|++
T Consensus 31 lm~EIA~~T~~s~~~~~~eim~~L~kRL~~k----~~~vk~KaL~lL~yL~~~ 79 (140)
T 1vdy_A 31 KLEEICDLLRSSHVSIVKEFSEFILKRLDNK----SPIVKQKALRLIKYAVGK 79 (140)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHTSS----SHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhcCC----CcceeehHHHHHHHHHHh
Confidence 34445543 34433 689999999999988 888899999999999875
No 115
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=31.40 E-value=1.1e+02 Score=37.39 Aligned_cols=103 Identities=14% Similarity=0.035 Sum_probs=0.0
Q ss_pred HhhHHHH--HHHhhc--cCCHhHHHhHHHHHHHhhcCCC-chHHHHHHHHHHHHHccccCCCcccccccc-ccchHHHHH
Q 002048 489 KAGALKF--FTMFRI--QIPKIHAFQFFPDLVRFLGAES-NVVHSYAASCIEKLLQVKDEGGKSRYNSAD-ITPYLSVLM 562 (975)
Q Consensus 489 r~ra~~~--l~~f~~--~~~~~~~~~~~~~l~~~L~~~~-~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~-l~p~l~~il 562 (975)
|.+++.+ .-.|++ .++++....++..++.+|.|+. +-||..|+.+|..++.. . .......++
T Consensus 818 R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c------------~~~~~~~~~li 885 (997)
T 1vsy_5 818 TKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHN------------WKEEQPLLSLI 885 (997)
T ss_dssp HHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHS------------CCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHc------------CCchhhHHHHH
Q ss_pred HHHHHhcCC---------------CCchhhHHHHHHHHHHHh-hccch--hhhHHHHHHHHH
Q 002048 563 TSLFNAFKF---------------PESEENQYIMKCIMRVLG-VAEIS--NEVAAPCISGLT 606 (975)
Q Consensus 563 ~~L~~ll~~---------------~~~~~~~~l~~~l~~vi~-~~~~i--~p~~~~l~~~L~ 606 (975)
..+...+.. . .....+=.++.++. +.-.+ -++.+.++..|.
T Consensus 886 ~~f~~~~~~~~~~~~~~~~~~~~~~---~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La 944 (997)
T 1vsy_5 886 ERFAKGLDVNKYTSKERQKLSKTDI---KIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLS 944 (997)
T ss_dssp HHHTTSSTTTSSCHHHHHHHHHHCH---HHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHH
T ss_pred HHHHHHHhhcccccccccccchHHH---HHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHH
No 116
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=29.11 E-value=5.6e+02 Score=27.40 Aligned_cols=116 Identities=11% Similarity=0.102 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhhhcCCCccccCcccHHHHHHHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhh
Q 002048 440 CAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFL 519 (975)
Q Consensus 440 aal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L 519 (975)
-.|-.+|++-.+..-. -...-..|+.++++|.-..+ ..+.-...-..++.+|.+.- +.....++..++++=
T Consensus 190 eLLeilgsIinGfa~P-----Lkeehk~fl~~vLlPLHk~~---~~~~y~~qL~ycv~qf~eKD-p~L~~~vi~~LLk~W 260 (403)
T 3fga_B 190 ELLEILGSIINGFALP-----LKEEHKIFLLKVLLPLHKVK---SLSVYHPQLAYCVVQFLEKD-STLTEPVVMALLKYW 260 (403)
T ss_dssp HHHHHHHHHHHHCCSS-----CCHHHHHHHHHTTTGGGGST---TGGGTHHHHHHHHHHHHHHC-GGGHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcccCCC-----chHHHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHHHhC-chhHHHHHHHHHHhC
Confidence 4666777776543111 11245688999999998764 23444445566777776542 355666777777665
Q ss_pred cCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCC
Q 002048 520 GAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFP 572 (975)
Q Consensus 520 ~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~ 572 (975)
--.+..-.+.=-.=++.+++.. +++.+.+...+++..+..++++.
T Consensus 261 P~tns~KevlFL~Ele~iLe~~--------~~~~f~~i~~~lf~~la~ci~S~ 305 (403)
T 3fga_B 261 PKTHSPKEVMFLNELEEILDVI--------EPSEFVKIMEPLFRQLAKCVSSP 305 (403)
T ss_dssp CSSCHHHHHHHHHHHHHHHTTC--------CHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CCCCcHHHHHHHHHHHHHHHhC--------CHHHHHHHHHHHHHHHHHHHCCC
Confidence 4444333333344445555542 46678888899999999888775
No 117
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=27.73 E-value=8.8e+02 Score=29.79 Aligned_cols=117 Identities=6% Similarity=-0.060 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHHHHh
Q 002048 396 IACELLKGIATHY---RQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSV 472 (975)
Q Consensus 396 ~A~~ll~~L~~~~---~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l~~~ 472 (975)
+...++...|... +....+.+.+++.+.++ ..+-..+-.+|.++|.++.- .....+..+
T Consensus 418 a~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~------~~~~~~~~~~LkaLGN~g~p------------~~l~~l~~~ 479 (1056)
T 1lsh_A 418 GYGSLVFRYCANTVSCPDELLQPLHDLLSQSSD------RAKEEEIVLALKALGNAGQP------------NSIKKIQRF 479 (1056)
T ss_dssp HHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHTCG------------GGHHHHHTT
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHh------cCChHHHHHHHHHhhccCCh------------hHHHHHHHh
Confidence 3445555555432 23344556555555554 23456677788888887421 111233333
Q ss_pred cccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcC--CCchHHHHHHHHHH
Q 002048 473 IVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGA--ESNVVHSYAASCIE 535 (975)
Q Consensus 473 v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~--~~~~V~~~Aa~aL~ 535 (975)
+|...+...+....+|..|+|.+.++....+.. +-+.+++...| .+.-||+.|+..|=
T Consensus 480 -l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~----v~~il~~i~~n~~e~~EvRiaA~~~Lm 539 (1056)
T 1lsh_A 480 -LPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK----VQEIVLPIFLNVAIKSELRIRSCIVFF 539 (1056)
T ss_dssp -STTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH----HHHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred -hcCccccccccchHHHHHHHHHHHHhhhhchHH----HHHHHHHHhcCCCCChHHHHHHHHHHH
Confidence 333322111124567788999988887653322 33444445533 37888988886553
No 118
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=26.24 E-value=8.5e+02 Score=28.59 Aligned_cols=235 Identities=8% Similarity=0.020 Sum_probs=115.4
Q ss_pred cchhhhHHHHHHHHHHHHHhh--hhh-HHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhh-----cCCCcccc
Q 002048 389 DVDTRRRIACELLKGIATHYR--QHV-METVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKK-----AGSTSIST 460 (975)
Q Consensus 389 d~~s~R~~A~~ll~~L~~~~~--~~~-~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~-----~~g~~~~~ 460 (975)
.....|..|...|..|+.... ..+ -+-.+..+-+++. ..+...-..|+.|..++..+.... ..|..
T Consensus 469 ~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~---s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~--- 542 (778)
T 3opb_A 469 LSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLA---NKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYS--- 542 (778)
T ss_dssp SCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTT---CC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSC---
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh---cCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCc---
Confidence 356778888899999985421 111 1111122222222 111110135777888888776332 12221
Q ss_pred CcccHHHHHHHhcccccCCCC-----CCCcc-hhHhhHHHHHHHhhccCC-------HhHHH--hHHHHHHHhhcCCCch
Q 002048 461 DLVDVQSFFTSVIVPELQSPD-----VNAFP-MLKAGALKFFTMFRIQIP-------KIHAF--QFFPDLVRFLGAESNV 525 (975)
Q Consensus 461 ~~~~~~~~l~~~v~p~l~~~~-----~~~~~-~Lr~ra~~~l~~f~~~~~-------~~~~~--~~~~~l~~~L~~~~~~ 525 (975)
.....+.+.+.+-|.-...+ -...+ .-+..|+..++..+..-+ ..... .+++.+.++|.+.+..
T Consensus 543 -~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~ 621 (778)
T 3opb_A 543 -ALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVP 621 (778)
T ss_dssp -STTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHH
T ss_pred -cccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHH
Confidence 12445556555442211100 00012 337788899888776431 11233 4788999999998999
Q ss_pred HHHHHHHHHHHHHccccCCCccccccccccchHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccchhhh---HHHHH
Q 002048 526 VHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLGVAEISNEV---AAPCI 602 (975)
Q Consensus 526 V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~~~~l~~~l~~vi~~~~~i~p~---~~~l~ 602 (975)
||..|+.++..+....+....-.+..+ .|--..=++-|+.+++..+.........++..+....+.+... ....+
T Consensus 622 VrrAA~elI~NL~~~~e~i~~k~~~~~--~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi 699 (778)
T 3opb_A 622 LQRSTLELISNMMSHPLTIAAKFFNLE--NPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELI 699 (778)
T ss_dssp HHHHHHHHHHHHHTSGGGTGGGTSCCS--SHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHhhc--CchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccH
Confidence 999999999999875431000001111 2222223667777776543222223333333221111111100 01233
Q ss_pred HHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHH
Q 002048 603 SGLTSILNEVCKNPKSPIFNHYLFESVAVLVRR 635 (975)
Q Consensus 603 ~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~ 635 (975)
+.+..++... .+++...|...-++..++..
T Consensus 700 ~~Ll~lL~~~---~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 700 ENAIQVFADQ---IDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHHHHHHHHT---TTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcc---CCCHHHHHHHHHHHHHHHHh
Confidence 3444444322 24556667777777777653
No 119
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=23.12 E-value=7.5e+02 Score=26.85 Aligned_cols=114 Identities=16% Similarity=0.141 Sum_probs=71.7
Q ss_pred cchHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCcccccc---CCCccchHHHHHHHHccCccchhccCchHHHHHHHHH
Q 002048 665 EFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKR---SSNVPALVRLLQAFLQKVPREIAQEGKLREVLGIFNM 741 (975)
Q Consensus 665 ~~~~~~l~ll~~ll~~~~~~~~~~~~~lf~~l~~~~l~~~---~~~l~~~~~~L~~~i~~~~~~~~~~~~~~~il~i~~~ 741 (975)
.=+.+.++++.+++.+-..|+.+....++-.++-| +... ..|-+.+..|+..|+.++|.-. ..++.-+-+
T Consensus 219 nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlP-Lhk~~~l~~y~~qL~ycv~qf~eKDp~L~------~~vi~~LLk 291 (449)
T 2npp_B 219 NGIAELLEILGSIINGFALPLKEEHKIFLLKVLLP-LHKVKSLSVYHPQLAYCVVQFLEKDSTLT------EPVVMALLK 291 (449)
T ss_dssp SCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGG-GGGSSCGGGTHHHHHHHHHHHHHHCGGGH------HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH-HHccchhHHhHHHHHHHHHHHHhcCcHhH------HHHHHHHHH
Confidence 34567888888888876556777776655555444 2332 2367888999999999987542 223322212
Q ss_pred hhcCCCC---cchHHHHHHHHHHhcchhhHhhhHHHHHHHHHHHhhcC
Q 002048 742 LVLSPST---DEQGFYVLNTIVESLEYGVIAQFVPHIWGVLFTRLQNK 786 (975)
Q Consensus 742 ll~~~~~---~~~a~~ll~~ii~~~~~~~~~~~l~~il~~~l~~L~~~ 786 (975)
.= +..+ +..-++-++.++..++.+.+...+..+++.+...+.+.
T Consensus 292 ~W-P~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~ 338 (449)
T 2npp_B 292 YW-PKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSP 338 (449)
T ss_dssp TC-CSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCS
T ss_pred hC-CCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 21 2222 12234667888888876777777778877777776664
No 120
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=22.63 E-value=1.1e+02 Score=29.84 Aligned_cols=121 Identities=9% Similarity=0.032 Sum_probs=73.3
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhhcCCCccccCcccHHHHH
Q 002048 390 VDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFF 469 (975)
Q Consensus 390 ~~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~~~g~~~~~~~~~~~~~l 469 (975)
.+-.|.+|..++........ +--+.++...+. . -++|-.-|+...++|.+...-. ..+.
T Consensus 68 ~~E~r~la~~~l~~~~~~~~----~~~l~~~~~~l~----~-~~nWd~~D~~a~~~~~~~~~~~---------~~~~--- 126 (220)
T 2b6c_A 68 EREYQYVAIDLALQNVQRFS----LEEVVAFKAYVP----Q-KAWWDSVDAWRKFFGSWVALHL---------TELP--- 126 (220)
T ss_dssp SHHHHHHHHHHHHHTGGGCC----HHHHHHGGGGTT----T-TCSHHHHHHHHHHHHHHHHHSG---------GGHH---
T ss_pred hhHHHHHHHHHHHHHHhhCC----HHHHHHHHHHhc----c-CCcHHHHHHHHHHHHHHHHHCh---------HHHH---
Confidence 45568888887765432211 222233333332 1 4689999976655665532210 0111
Q ss_pred HHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHc
Q 002048 470 TSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQ 539 (975)
Q Consensus 470 ~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~ 539 (975)
..+.....+ ++.++|+-|+...-.|... .....+++.+-.++.|++.=||-..+++|+.+..
T Consensus 127 -~~i~~W~~s----~~~w~rR~ai~~~l~~~~~---~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k 188 (220)
T 2b6c_A 127 -TIFALFYGA----ENFWNRRVALNLQLMLKEK---TNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSK 188 (220)
T ss_dssp -HHHHHHTTC----SSHHHHHHHHHTTTTCGGG---CCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHcC----CCHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence 223344555 5789998888755444333 3446667878889999999999999999997554
No 121
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=21.50 E-value=1.4e+02 Score=29.21 Aligned_cols=120 Identities=9% Similarity=0.146 Sum_probs=70.7
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHH-HHHHHHHHhhhcCCCccccCcccHHHHH
Q 002048 391 DTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCA-IYLVVSLATKKAGSTSISTDLVDVQSFF 469 (975)
Q Consensus 391 ~s~R~~A~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaa-l~~ig~ia~~~~~g~~~~~~~~~~~~~l 469 (975)
.-.|.+|..++....+.+.....+ .+...+.. .+||-.-|.. -.++|.+...-.+.. ..-+..|
T Consensus 75 ~E~r~~ai~~l~~~~k~~~~~~l~----~~~~~l~~-----~~nWd~~D~~a~~~~g~~~~~~p~~~-----~~~l~~W- 139 (232)
T 3jxy_A 75 REFQAAALDIMQKYKKHINETHIP----FLEELIVT-----KSWWDSVDSIVPTFLGDIFLKHPELI-----SAYIPKW- 139 (232)
T ss_dssp HHHHHHHHHHHHHTGGGCCGGGHH----HHHHHHTS-----SCCHHHHHHHTTTHHHHHHHHCGGGG-----GGTHHHH-
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHH----HHHHHHcc-----CCChHHHHHhhHHHHHHHHHHCHHHH-----HHHHHHH-
Confidence 336888888876543333333333 33333321 4689998876 345665543211100 0112333
Q ss_pred HHhcccccCCCCCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHc
Q 002048 470 TSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQ 539 (975)
Q Consensus 470 ~~~v~p~l~~~~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~ 539 (975)
..+ +++++|+.|+...-.|... .....+++.+..++.|++.-||-..+++|+.+..
T Consensus 140 -------~~s----~~~w~rR~ai~~~l~~~~~---~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k 195 (232)
T 3jxy_A 140 -------IAS----DNIWLQRAAILFQLKYKQK---MDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAK 195 (232)
T ss_dssp -------HHS----SCHHHHHHHHHTTTTCGGG---CCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred -------hcC----CchHHHHHHHHHHHHHHhC---CCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 344 5789988888665444333 2344566777788999999999999999997553
No 122
>1n6j_G Calcineurin-binding protein cabin 1; MADS-BOX, protein-DNA complex, histone deacetylases, transcription/DNA complex; 2.20A {Homo sapiens}
Probab=21.19 E-value=75 Score=19.69 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHHHHH
Q 002048 89 PILDAEKDQIKSLIVGL 105 (975)
Q Consensus 89 ~i~~e~K~~Ir~~ll~~ 105 (975)
.|++|.|+.+|..++..
T Consensus 8 siseetkqklk~~ils~ 24 (35)
T 1n6j_G 8 SISEETKQKLKSAILSA 24 (35)
T ss_dssp CCCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHhh
Confidence 69999999999988754
No 123
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=21.16 E-value=5.8e+02 Score=24.83 Aligned_cols=100 Identities=15% Similarity=0.128 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHhc----------CCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcc
Q 002048 7 TLQHLSQCFLHTLSPSP--EPRRAAERSLAEMAD----------RPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFR 74 (975)
Q Consensus 7 ~~~~l~~~L~~tls~d~--~~r~~AE~~L~~~~~----------~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~ 74 (975)
+.+.+++.| .|+|. .++..|-..|..+.. ..|....|.+++.++ +..+|..|+-.|+|.-..
T Consensus 9 ~i~~lV~lL---~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~--~~~vq~~Aa~aL~nLa~~- 82 (233)
T 3tt9_A 9 TLERAVSML---EADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ--NEDVQRAVCGALRNLVFE- 82 (233)
T ss_dssp CHHHHHHTC---CSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTT-
T ss_pred cHHHHHHHh---CCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhC-
Confidence 344444444 45666 666666566665442 247788888888764 678999999999988642
Q ss_pred cCCCCCCCCCCCcCCCCHHHHHHHHH-----HHHHHHhc-CCHHHHHHHHHHHHHHhccc
Q 002048 75 WAPASDRNSGPTLAPILDAEKDQIKS-----LIVGLMLT-STPRIQSQLSEALVVVGNHD 128 (975)
Q Consensus 75 W~~~~~~~~~~~~~~i~~e~K~~Ir~-----~ll~~l~~-~~~~ir~qla~~i~~Ia~~D 128 (975)
+++.|..|.+ .|++.|.+ .+..++.+.+.++-.++.++
T Consensus 83 ----------------~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~ 126 (233)
T 3tt9_A 83 ----------------DNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND 126 (233)
T ss_dssp ----------------CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG
T ss_pred ----------------CHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh
Confidence 2456666654 35666654 45679999988888888765
No 124
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=20.26 E-value=7.4e+02 Score=25.69 Aligned_cols=174 Identities=12% Similarity=0.155 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHhccc---------CCCCCCchHHHHHHHhcccccCCChhHHhHHHHHHHHHHHhhhccccchhhhhh
Q 002048 112 RIQSQLSEALVVVGNHD---------FPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSIFKKFRYQFKTNDLLLD 182 (975)
Q Consensus 112 ~ir~qla~~i~~Ia~~D---------~P~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i~k~~~~~~~~~~~~~~ 182 (975)
--|+.++.+.+.+.|.. |-..+|+++..|+....++ +.....|.+ |.+.+| + +.+
T Consensus 93 E~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~----diAl~~G~m--LRecir-~------e~l--- 156 (341)
T 1upk_A 93 EGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESP----EIALNCGIM--LRECIR-H------EPL--- 156 (341)
T ss_dssp HHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGST----TTHHHHHHH--HHHHHT-S------HHH---
T ss_pred hhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccc----hhHhHHHHH--HHHHHH-h------HHH---
Confidence 36666666666666643 3346899999999988777 654444432 333332 2 111
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhcccCCCchHHHHhHHHHHHHHHHHhccc
Q 002048 183 LKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFEDHMREWMTEFKKYLTTN 262 (975)
Q Consensus 183 l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~~~lp~~~~~~~~~~~~~~~~~l~~~ 262 (975)
-+.++. .+.+..+|. .+ + .++-+....++.+++-++...+.++ .+++..+...+...+.++++.+
T Consensus 157 a~~iL~--~~~f~~fF~----yv-~----~~~FdiasDAf~TfkelLt~Hk~lv----aefL~~nyd~Ff~~y~~Ll~S~ 221 (341)
T 1upk_A 157 AKIILW--SEQFYDFFR----YV-E----MSTFDIASDAFATFKDLLTRHKLLS----AEFLEQHYDRFFSEYEKLLHSE 221 (341)
T ss_dssp HHHHHH--SGGGGHHHH----HT-T----CSSHHHHHHHHHHHHHHHHSSHHHH----HHHHHHTHHHHHHHHHHHTTCS
T ss_pred HHHHhc--cHHHHHHHH----Hh-c----CCCchHHHHHHHHHHHHHhccHHHH----HHHHHHhHHHHHHHHHHHhcCC
Confidence 011222 012222222 11 1 2233444455555554444333332 3888888888888887776642
Q ss_pred CCcccCCCCcCchHHHHHHHHHHHHHHHHH-Hh-HHHHHhhH--HHHHHHHHHHHhccCCCCcchHHHHHHHHHHH
Q 002048 263 YPALESTSDGLGLVDGLRAAVCENISLYMK-MN-EEEFQGYL--NDFALAVWTLLGNVSQSSSRDSLAVTAIKFLT 334 (975)
Q Consensus 263 ~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~-~~-~~~f~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~l~fl~ 334 (975)
+ .-.|.+..+.|..+.- |. ...+..|+ +.-+..+.+++.. +...+...++-.++
T Consensus 222 N-------------YVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d-----~sk~Iq~EAFhVFK 279 (341)
T 1upk_A 222 N-------------YVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRD-----KSRNIQFEAFHVFK 279 (341)
T ss_dssp S-------------HHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTC-----SCHHHHHHHHHHHH
T ss_pred c-------------chhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcC-----chhchhhhhhhhee
Confidence 1 4567788888876653 22 12223343 3344555555543 22344444444444
Done!