Query 002049
Match_columns 975
No_of_seqs 177 out of 190
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 10:12:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002049.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002049hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jma_B Herpesvirus entry media 93.1 0.049 1.7E-06 54.0 3.3 64 794-862 15-89 (167)
2 3fl7_A Ephrin receptor; ATP-bi 92.7 0.031 1.1E-06 64.8 1.5 37 796-834 265-303 (536)
3 3me4_A Tumor necrosis factor r 91.7 0.1 3.4E-06 54.3 3.7 65 792-861 43-118 (216)
4 1ext_A Tumor necrosis factor r 90.3 0.14 4.9E-06 50.4 3.1 36 795-831 20-65 (162)
5 4fhq_A Tumor necrosis factor r 89.6 0.21 7E-06 48.4 3.5 62 795-861 18-90 (134)
6 1sg1_X Tumor necrosis factor r 89.4 0.21 7E-06 48.9 3.4 63 794-862 15-87 (161)
7 2uwi_A CRME protein; receptor, 89.4 0.14 4.7E-06 49.9 2.1 63 793-861 15-88 (142)
8 2hey_R Tumor necrosis factor r 89.3 0.12 4.2E-06 49.9 1.7 61 795-861 19-90 (146)
9 3k51_B Decoy receptor 3; DCR3, 89.1 0.23 7.9E-06 50.0 3.5 63 793-861 20-93 (176)
10 1sg1_X Tumor necrosis factor r 89.0 0.15 5.2E-06 49.9 2.1 37 796-832 2-42 (161)
11 3u3p_A Tumor necrosis factor r 88.9 0.21 7.3E-06 54.7 3.4 37 793-830 24-69 (313)
12 1ext_A Tumor necrosis factor r 88.8 0.13 4.6E-06 50.7 1.6 40 796-835 3-51 (162)
13 1du3_A Death receptor 5; trail 88.8 0.27 9.3E-06 47.1 3.7 66 791-862 21-92 (130)
14 3alq_R Tumor necrosis factor r 88.8 0.22 7.6E-06 49.4 3.2 63 794-861 21-93 (173)
15 3alq_R Tumor necrosis factor r 88.1 0.15 5.1E-06 50.7 1.4 62 795-862 5-74 (173)
16 3tje_F Tumor necrosis factor r 87.3 0.21 7.2E-06 49.5 1.9 62 795-861 44-118 (156)
17 2e4u_A Metabotropic glutamate 86.7 0.16 5.4E-06 57.8 0.8 40 793-836 484-532 (555)
18 3tje_F Tumor necrosis factor r 86.1 0.55 1.9E-05 46.6 4.1 62 792-859 26-94 (156)
19 1jma_B Herpesvirus entry media 84.3 0.36 1.2E-05 47.8 2.0 39 796-834 2-45 (167)
20 3urf_Z Tumor necrosis factor r 83.7 0.54 1.8E-05 47.2 2.9 35 796-831 101-144 (171)
21 3urf_Z Tumor necrosis factor r 82.5 0.47 1.6E-05 47.6 1.9 34 796-830 21-63 (171)
22 3k51_B Decoy receptor 3; DCR3, 82.2 0.88 3E-05 45.8 3.8 45 796-843 103-156 (176)
23 3qd6_R CD40L receptor, tumor n 80.1 1.4 4.8E-05 44.0 4.4 36 795-831 18-62 (177)
24 2hey_R Tumor necrosis factor r 80.0 0.59 2E-05 45.1 1.6 31 798-831 85-122 (146)
25 1du3_A Death receptor 5; trail 79.3 0.59 2E-05 44.7 1.3 48 804-861 22-71 (130)
26 3me4_A Tumor necrosis factor r 78.7 0.86 2.9E-05 47.3 2.4 35 796-831 130-173 (216)
27 1klo_A Laminin; glycoprotein; 77.7 0.91 3.1E-05 44.6 2.1 41 791-831 16-58 (162)
28 3u3p_A Tumor necrosis factor r 72.0 1.5 5E-05 48.2 2.1 44 796-842 107-159 (313)
29 1klo_A Laminin; glycoprotein; 71.2 1.3 4.3E-05 43.6 1.3 35 797-831 79-114 (162)
30 3qd6_R CD40L receptor, tumor n 68.7 2.6 8.8E-05 42.1 2.9 41 795-835 3-48 (177)
31 4fhq_A Tumor necrosis factor r 66.5 2.3 7.8E-05 41.1 2.0 39 796-834 4-47 (134)
32 4aqt_A Laminin subunit gamma-1 66.3 2.1 7.2E-05 47.9 1.9 33 796-831 337-369 (375)
33 2y38_A Laminin subunit alpha-5 62.7 6.8 0.00023 44.3 5.1 35 797-831 289-327 (403)
34 2hr7_A Insulin receptor; hormo 61.9 2.8 9.6E-05 48.2 1.9 31 796-830 272-305 (486)
35 4aqs_A Laminin subunit beta-1; 59.3 2.5 8.4E-05 48.4 0.8 33 797-831 463-495 (525)
36 2odl_A Adhesin; HMW1, secretio 58.1 8.5 0.00029 43.2 4.8 61 709-779 251-340 (373)
37 2uwi_A CRME protein; receptor, 55.5 3.4 0.00011 40.1 0.9 42 797-838 82-136 (142)
38 4aqt_A Laminin subunit gamma-1 51.7 10 0.00035 42.4 4.1 36 796-831 274-313 (375)
39 2odl_A Adhesin; HMW1, secretio 51.1 16 0.00055 41.0 5.6 27 258-284 251-279 (373)
40 2dtg_E Insulin receptor; IR ec 48.6 7.4 0.00025 47.3 2.6 25 803-830 280-305 (897)
41 1mox_A Epidermal growth factor 39.0 15 0.00052 42.4 3.1 33 797-830 270-306 (501)
42 1igr_A Insulin-like growth fac 35.0 17 0.00057 41.9 2.6 23 806-830 272-295 (478)
43 2a55_A C4B-binding protein; co 33.9 47 0.0016 31.0 5.1 66 789-859 25-96 (133)
44 3zyj_B Netrin-G1; cell adhesio 33.3 18 0.00061 41.3 2.4 40 791-831 311-359 (426)
45 2gy5_A Angiopoietin-1 receptor 26.9 31 0.0011 38.9 2.9 20 797-816 266-286 (423)
46 3i2t_A Epidermal growth factor 21.1 35 0.0012 40.0 2.0 30 796-830 271-303 (551)
47 3j00_Z Cell division protein F 20.5 58 0.002 30.1 2.9 25 919-946 60-85 (98)
No 1
>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR superfamily, viral protein; HET: NAG; 2.65A {Human herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*
Probab=93.09 E-value=0.049 Score=54.01 Aligned_cols=64 Identities=22% Similarity=0.504 Sum_probs=40.8
Q ss_pred ecCCCCCCCc---------cccceeCCCCceeccCCCCCCCcccCCCCCCCCC-cceeecc-CCccCCCCCccccCCccc
Q 002049 794 TGKACPRGLY---------GVFCEECPVGTFKNVSGSDRALCRNCSSNELPHR-ALYIPIR-GGVTECPCPYKCVSERYH 862 (975)
Q Consensus 794 ~g~~CP~G~y---------G~fC~eCP~GtYKn~~gs~~~~C~pCp~~~~p~r-a~~i~~r-ggv~~~~Cpy~C~s~~y~ 862 (975)
.=+.||+|+| ...|++||.|||++.... ...|.+|+. -+.. ..|+... .....+.| .|.++.|.
T Consensus 15 ~C~~CppG~~~~~~C~~~~~t~C~~Cp~GtY~~~~n~-~~~C~~C~~--C~~~~g~~~~~~Ct~t~~t~C--~C~~G~y~ 89 (167)
T 1jma_B 15 CCPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLNG-LSKCLQCQM--CDPAMGLRASRNCSRTENAVC--GCSPGHFC 89 (167)
T ss_dssp CCBCBCTTEEEEECCCSSSCCEEEECCTTEECSSCBC-SSCCEECCC--CCTTTTEEEEECCCSSSCCEE--EECTTEEE
T ss_pred CCCCCCCCCEeccCCCCCCCCcCCcCCCCccccccCc-CccccCCcc--cccCCCeEEeccCCCCCCCcc--cCCCCcee
Confidence 4467888875 357999999999986432 467888863 3221 2333222 23345678 89888873
No 2
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=92.71 E-value=0.031 Score=64.84 Aligned_cols=37 Identities=27% Similarity=0.592 Sum_probs=30.2
Q ss_pred CCCCCCCc--cccceeCCCCceeccCCCCCCCcccCCCCCC
Q 002049 796 KACPRGLY--GVFCEECPVGTFKNVSGSDRALCRNCSSNEL 834 (975)
Q Consensus 796 ~~CP~G~y--G~fC~eCP~GtYKn~~gs~~~~C~pCp~~~~ 834 (975)
=.|.+||. +--|+.||.|+||...+ ...|++||.+..
T Consensus 265 C~C~~G~e~~~~~C~aC~~g~~k~~~~--~~~C~~CP~~S~ 303 (536)
T 3fl7_A 265 CLCQAGYEKVEDACQACSPGFFKFEAS--ESPCLECPEHTL 303 (536)
T ss_dssp CEECTTEEEETTEEEECCTTEECCSCC--SSCCEECCSSEE
T ss_pred EeccCccccCCceeeecCCCCCcccCC--CCccccCCCCCC
Confidence 45888885 55799999999998764 589999997554
No 3
>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl, rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP signaling protein; 2.01A {Mus musculus} PDB: 3me2_R 3qbq_B 4giq_R* 3nzy_B
Probab=91.74 E-value=0.1 Score=54.29 Aligned_cols=65 Identities=14% Similarity=0.287 Sum_probs=40.2
Q ss_pred eEecCCCCCCCc---------cccceeCCCCceeccCCCCCCCcccCCCCCCCCCcceeeccCCc--cCCCCCccccCCc
Q 002049 792 TVTGKACPRGLY---------GVFCEECPVGTFKNVSGSDRALCRNCSSNELPHRALYIPIRGGV--TECPCPYKCVSER 860 (975)
Q Consensus 792 ti~g~~CP~G~y---------G~fC~eCP~GtYKn~~gs~~~~C~pCp~~~~p~ra~~i~~rggv--~~~~Cpy~C~s~~ 860 (975)
..-=+.||||+| ...|++||.|||++.... ...|++|+. -.....++.++... ..+.| .|.+++
T Consensus 43 ~~CC~~CppG~~~~~~Ct~~~~t~C~pC~~gtY~~~~n~-~~~C~~C~~--C~~~~~~~~~~~Ct~t~dtvC--~C~~G~ 117 (216)
T 3me4_A 43 GRCCSRCEPGKYLSSKCTPTSDSVCLPCGPDEYLDTWNE-EDKCLLHKV--CDAGKALVAVDPGNHTAPRRC--ACTAGY 117 (216)
T ss_dssp TEEEECBCTTEEEEECCBTTBCCEEEECCTTEECCSSBC-CSSCEECCC--CCGGGTEEEESTTCSSSCCEE--EECTTE
T ss_pred CCCcCCCCCCceecccCCCCCCCccccCCCCCeecCCCC-CCcCCCCCC--CCCCcCeEEEecCCCCCCccc--cCCCCe
Confidence 345688888886 457999999999876421 478888885 43322244443332 22344 376666
Q ss_pred c
Q 002049 861 Y 861 (975)
Q Consensus 861 y 861 (975)
|
T Consensus 118 y 118 (216)
T 3me4_A 118 H 118 (216)
T ss_dssp E
T ss_pred E
Confidence 5
No 4
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine, signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Probab=90.28 E-value=0.14 Score=50.44 Aligned_cols=36 Identities=31% Similarity=0.728 Sum_probs=25.2
Q ss_pred cCCCCCCCc----------cccceeCCCCceeccCCCCCCCcccCCC
Q 002049 795 GKACPRGLY----------GVFCEECPVGTFKNVSGSDRALCRNCSS 831 (975)
Q Consensus 795 g~~CP~G~y----------G~fC~eCP~GtYKn~~gs~~~~C~pCp~ 831 (975)
=+.||+|+| -..|++||.|||.+.... ...|++|..
T Consensus 20 C~~CppG~~~~~~Ct~~~~~t~C~~C~~gty~~~~n~-~~~C~~C~~ 65 (162)
T 1ext_A 20 CTKCHKGTYLYNDCPGPGQDTDCRECESGSFTASENH-LRHCLSCSK 65 (162)
T ss_dssp EECBCTTEEEEECCSSTTSCCEEEECCTTEECCSSBC-CSSCEECCC
T ss_pred CCCCCCCcccccccCCCCCCcccccCCCCccccccCC-CCcccccCC
Confidence 467788764 246888888888887643 466888773
No 5
>4fhq_A Tumor necrosis factor receptor superfamily member; cysteine rich domain, TNF receptor, structural genomics, PSI protein structure initiative; 2.25A {Homo sapiens} PDB: 2aw2_B*
Probab=89.64 E-value=0.21 Score=48.39 Aligned_cols=62 Identities=23% Similarity=0.490 Sum_probs=38.7
Q ss_pred cCCCCCCCc---------cccceeCCCCceeccCCCCCCCcccCCCCCCCCCcceeeccCCcc--CCCCCccccCCcc
Q 002049 795 GKACPRGLY---------GVFCEECPVGTFKNVSGSDRALCRNCSSNELPHRALYIPIRGGVT--ECPCPYKCVSERY 861 (975)
Q Consensus 795 g~~CP~G~y---------G~fC~eCP~GtYKn~~gs~~~~C~pCp~~~~p~ra~~i~~rggv~--~~~Cpy~C~s~~y 861 (975)
=+.||||+| ...|++||.|||++... ....|++|.. -......+.++-... .+.|. |.++.|
T Consensus 18 C~~CppG~~~~~~C~~~~~t~C~pC~~gtys~~~n-~~~~C~~C~~--C~~~~g~~~~~~CT~t~dtvC~--C~~G~~ 90 (134)
T 4fhq_A 18 CPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLN-GLSKCLQCQM--CDPAMGLRASRNCSRTENAVCG--CSPGHF 90 (134)
T ss_dssp EECBCTTEEEEECCC--CCCEEEECCTTEECCSCB-CCSSCEECCC--CCGGGTEEEEECCCSSSCCEEE--ECTTEE
T ss_pred CCCCCCCCEecccCCCCCCCcccCCCCCCEecCCC-CCCcCcCCCC--CCccCCeEEeccCCCCCCcccc--CCCCCE
Confidence 357777764 45799999999987642 2588999986 432223443333322 33453 777766
No 6
>1sg1_X Tumor necrosis factor receptor superfamily member 16; nerve growth factor, NGF, neurotrophin, common neurotrophin receptor; 2.40A {Rattus norvegicus} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 g.24.1.1 PDB: 3buk_C* 3ij2_X
Probab=89.41 E-value=0.21 Score=48.92 Aligned_cols=63 Identities=24% Similarity=0.486 Sum_probs=38.2
Q ss_pred ecCCCCCCCc--------cccceeCCCC-ceeccCCCCCCCcccCCCCCCCCCcceeeccC-CccCCCCCccccCCccc
Q 002049 794 TGKACPRGLY--------GVFCEECPVG-TFKNVSGSDRALCRNCSSNELPHRALYIPIRG-GVTECPCPYKCVSERYH 862 (975)
Q Consensus 794 ~g~~CP~G~y--------G~fC~eCP~G-tYKn~~gs~~~~C~pCp~~~~p~ra~~i~~rg-gv~~~~Cpy~C~s~~y~ 862 (975)
-=+.||+|+| ...|++||.| ||++.... ...|++|+. -+. ..++.... -...+.| .|.++.|.
T Consensus 15 ~C~~CppG~~~~~~C~~~~t~C~~C~~g~ty~~~~~~-~~~C~~C~~--C~~-~~~~~~~Ct~t~d~~C--~C~~G~y~ 87 (161)
T 1sg1_X 15 CCKACNLGEGVAQPCGANQTVCEPCLDNVTFSDVVSA-TEPCKPCTE--CLG-LQSMSAPCVEADDAVC--RCAYGYYQ 87 (161)
T ss_dssp BCCCBCTTEEEEECSSSSSCEEEECCTTTEECCSCBS-SCCCEECCC--CCT-TEEEEECCBTTBCCEE--EECTTEEE
T ss_pred CCCCCCcCCeECCcCCCCCCcCcCCcCCCccccCCCC-CCcCcCCCC--CCC-cceeecCCCcccCcee--ccCCCeEe
Confidence 3467777775 3469999998 99876532 457888874 332 33443221 1233466 37777775
No 7
>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor immunomodulator, TNF alpha receptor; 2.0A {Vaccinia virus}
Probab=89.36 E-value=0.14 Score=49.87 Aligned_cols=63 Identities=25% Similarity=0.580 Sum_probs=40.6
Q ss_pred EecCCCCCCCc---------cccceeCCCCceeccCCCCCCCcccCCCCCCCCCcceeeccCC--ccCCCCCccccCCcc
Q 002049 793 VTGKACPRGLY---------GVFCEECPVGTFKNVSGSDRALCRNCSSNELPHRALYIPIRGG--VTECPCPYKCVSERY 861 (975)
Q Consensus 793 i~g~~CP~G~y---------G~fC~eCP~GtYKn~~gs~~~~C~pCp~~~~p~ra~~i~~rgg--v~~~~Cpy~C~s~~y 861 (975)
.-=+.||||+| ...|++||.|||.+... ....|++|..-. . ..++.++.. ...+.| .|.++.|
T Consensus 15 ~cC~~CppG~~~~~~C~~~~~t~C~pC~~gty~~~~n-~~~~C~~C~~C~--~-~~~~~~~~Ct~t~dtvC--~C~~G~y 88 (142)
T 2uwi_A 15 KCCKLCKPGTYSDHRCDKYSDTICGHCPSDTFTSIYN-RSPWCHSCRGPC--G-TNRVEVTPCTPTTNRIC--HCDSNSY 88 (142)
T ss_dssp EEEECBCTTEEEEECCCSSCCCEEEECCTTEECCSSB-CCSSCEECCCCC--C-TTEEEEECCBTTBCCEE--EECTTEE
T ss_pred CCCCCCCCCCeeCccCCCCCCCccCcCCCCCCcccCC-CCCccCCCcCcc--c-CCeeEeecCCCCCCCEe--eCCCCcE
Confidence 34467888876 56799999999998753 245799998622 1 234433332 234466 4777777
No 8
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R
Probab=89.25 E-value=0.12 Score=49.95 Aligned_cols=61 Identities=18% Similarity=0.402 Sum_probs=38.1
Q ss_pred cCCCCCCCc---------cccceeCCCCceeccCCCCCCCcccCCCCCCCCC-cceeeccC-CccCCCCCccccCCcc
Q 002049 795 GKACPRGLY---------GVFCEECPVGTFKNVSGSDRALCRNCSSNELPHR-ALYIPIRG-GVTECPCPYKCVSERY 861 (975)
Q Consensus 795 g~~CP~G~y---------G~fC~eCP~GtYKn~~gs~~~~C~pCp~~~~p~r-a~~i~~rg-gv~~~~Cpy~C~s~~y 861 (975)
=+.||+|+| ...|++||.|||.+..+ ...|++|+. -+.. ..++..+- -...+.| .|.++.|
T Consensus 19 C~~C~pG~~~~~~Ct~~~~t~C~~C~~gty~~~~~--~~~C~~C~~--C~~~~g~~~~~~Ct~t~dt~C--~C~~G~y 90 (146)
T 2hey_R 19 CHECRPGNGMVSRCSRSQNTVCRPCGPGFYNDVVS--SKPCKPCTW--CNLRSGSERKQLCTATQDTVC--RCRAGTQ 90 (146)
T ss_dssp EECBCTTEEEEECCCSSCCCEEEECCTTEECCSCB--SSCCEECCC--CCGGGTEEEEECCBTTBCCEE--EECTTEE
T ss_pred CCCCCCCCeecccCCCCCCCCcccCCCCCEECCCC--CCcCcccCC--CCCCCCceEeccCccCCCccc--cCCCCee
Confidence 478888875 35799999999998764 468999885 3322 12332222 1223446 4777766
No 9
>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D bond, glycoprotein, membrane, secreted, signal-anchor, transmembrane, apoptosis; 2.45A {Homo sapiens} PDB: 3mi8_D 3mhd_D
Probab=89.07 E-value=0.23 Score=49.99 Aligned_cols=63 Identities=19% Similarity=0.470 Sum_probs=38.2
Q ss_pred EecCCCCCCCc---------cccceeCCCCceeccCCCCCCCcccCCCCCCCCCcceeeccC--CccCCCCCccccCCcc
Q 002049 793 VTGKACPRGLY---------GVFCEECPVGTFKNVSGSDRALCRNCSSNELPHRALYIPIRG--GVTECPCPYKCVSERY 861 (975)
Q Consensus 793 i~g~~CP~G~y---------G~fC~eCP~GtYKn~~gs~~~~C~pCp~~~~p~ra~~i~~rg--gv~~~~Cpy~C~s~~y 861 (975)
+-=+.||+|+| ...|++||.|+|++..- ....|++|.. .-.. ..+.++. -...+.| .|.++.|
T Consensus 20 ~cC~~CppG~~~~~~Ct~~~~t~C~pC~~gtY~~~~n-~~~~C~~C~~-~C~~--~~~~~~~Ct~tsdtvC--~C~~G~~ 93 (176)
T 3k51_B 20 LVCAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWN-YLERCRYCNV-LCGE--REEEARACHATHNRAC--RCRTGFF 93 (176)
T ss_dssp EEEECBCTTEEEEECCCSSSCCEEEECCTTEECCSCB-CCSSCEECCC-CCCS--SEEEEECCBTTBCCEE--EECTTEE
T ss_pred CCCCCCCCCceeCccCCCCCCCccccCCCCCeecCCC-CCCcCccccC-cCCC--CCEEeccCcCCCCcee--eccCCee
Confidence 34466777765 46899999999987542 2468999973 1221 2332222 2233456 6887766
No 10
>1sg1_X Tumor necrosis factor receptor superfamily member 16; nerve growth factor, NGF, neurotrophin, common neurotrophin receptor; 2.40A {Rattus norvegicus} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 g.24.1.1 PDB: 3buk_C* 3ij2_X
Probab=88.95 E-value=0.15 Score=49.86 Aligned_cols=37 Identities=32% Similarity=0.879 Sum_probs=28.4
Q ss_pred CCCCCCCc---cccceeCCCCceeccC-CCCCCCcccCCCC
Q 002049 796 KACPRGLY---GVFCEECPVGTFKNVS-GSDRALCRNCSSN 832 (975)
Q Consensus 796 ~~CP~G~y---G~fC~eCP~GtYKn~~-gs~~~~C~pCp~~ 832 (975)
+.||.|+| +.-|+.||.|+|.... +.....|.|||.+
T Consensus 2 ~~C~~g~y~~~~~~C~~CppG~~~~~~C~~~~t~C~~C~~g 42 (161)
T 1sg1_X 2 ETCSTGLYTHSGECCKACNLGEGVAQPCGANQTVCEPCLDN 42 (161)
T ss_dssp CCCTTCCBCTTSCBCCCBCTTEEEEECSSSSSCEEEECCTT
T ss_pred CCCCcccCccCCcCCCCCCcCCeECCcCCCCCCcCcCCcCC
Confidence 67999986 4569999999997652 1235799999974
No 11
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A
Probab=88.87 E-value=0.21 Score=54.72 Aligned_cols=37 Identities=41% Similarity=0.908 Sum_probs=28.0
Q ss_pred EecCCCCCCCc---------cccceeCCCCceeccCCCCCCCcccCC
Q 002049 793 VTGKACPRGLY---------GVFCEECPVGTFKNVSGSDRALCRNCS 830 (975)
Q Consensus 793 i~g~~CP~G~y---------G~fC~eCP~GtYKn~~gs~~~~C~pCp 830 (975)
+-=+.||+|+| ...|++||.|+|++... ....|.+|.
T Consensus 24 ~CC~~CpPGtyv~~~Ct~~~dt~C~pCp~GtYt~~~N-~~~~C~~C~ 69 (313)
T 3u3p_A 24 LTCDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHEN-GIEKCHDCS 69 (313)
T ss_dssp EEEECBCTTEEEEECCBTTBCCEEEECCTTEECCSCB-CCSSCEECC
T ss_pred CCCCCCCCCceecCcCCCCCCCccccCCCCceeccCC-CCCcCcccc
Confidence 44567888876 45799999999998642 247898887
No 12
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine, signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Probab=88.83 E-value=0.13 Score=50.66 Aligned_cols=40 Identities=30% Similarity=0.754 Sum_probs=30.0
Q ss_pred CCCCCCCcc------ccceeCCCCceeccCC---CCCCCcccCCCCCCC
Q 002049 796 KACPRGLYG------VFCEECPVGTFKNVSG---SDRALCRNCSSNELP 835 (975)
Q Consensus 796 ~~CP~G~yG------~fC~eCP~GtYKn~~g---s~~~~C~pCp~~~~p 835 (975)
..||.|+|- .-|+.||.|+|....- .....|.|||.+++-
T Consensus 3 ~~C~~g~Y~~~~~~~~CC~~CppG~~~~~~Ct~~~~~t~C~~C~~gty~ 51 (162)
T 1ext_A 3 SVCPQGKYIHPQNNSICCTKCHKGTYLYNDCPGPGQDTDCRECESGSFT 51 (162)
T ss_dssp CCCCTTEEECSSCTTCEEECBCTTEEEEECCSSTTSCCEEEECCTTEEC
T ss_pred ccCCCCceeccCCCCCCCCCCCCCcccccccCCCCCCcccccCCCCccc
Confidence 579999762 3499999999987652 235789999975543
No 13
>1du3_A Death receptor 5; trail, DR5, complex; 2.20A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1d0g_R 2h9g_R 1za3_R 1d4v_A
Probab=88.81 E-value=0.27 Score=47.11 Aligned_cols=66 Identities=15% Similarity=0.322 Sum_probs=42.3
Q ss_pred ceEecCCCCCCCcc----ccceeCCCC-ceeccCCCCCCCcccCCCCCCCCCcceeeccC-CccCCCCCccccCCccc
Q 002049 791 GTVTGKACPRGLYG----VFCEECPVG-TFKNVSGSDRALCRNCSSNELPHRALYIPIRG-GVTECPCPYKCVSERYH 862 (975)
Q Consensus 791 Gti~g~~CP~G~yG----~fC~eCP~G-tYKn~~gs~~~~C~pCp~~~~p~ra~~i~~rg-gv~~~~Cpy~C~s~~y~ 862 (975)
....-+.||||+|= ..|++||.| +|.+.... ...|.+|.. -+. ..++..+- -...+.|. |.++.|.
T Consensus 21 ~~~~C~~CppG~~~~~~~t~C~pC~~g~ty~~~~n~-~~~C~~C~~--C~~-g~~~~~~Ct~t~dtvC~--C~~G~y~ 92 (130)
T 1du3_A 21 SSPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWND-LLFCLRCTR--CDS-GEVELSPCTTTRNTVCQ--CEEGTFR 92 (130)
T ss_dssp CCCBTTBBCTTEEECSSSSCEEECCTTTEECCSSBC-CSSCEECCC--CCT-TEEEEECCCSSSCCEEE--ECTTCEE
T ss_pred CCCccCCCCCCceecCCCCcCccCCCcCEEeCCCCC-CCcCcCCCC--CCc-ceeeeccCCCCCCCEec--CCCCeEE
Confidence 34466889999863 579999999 99876532 466888874 433 22332221 23445676 8877773
No 14
>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor complex, cytokine, cytokine-cytokine recepto; 3.00A {Homo sapiens}
Probab=88.80 E-value=0.22 Score=49.43 Aligned_cols=63 Identities=17% Similarity=0.356 Sum_probs=39.0
Q ss_pred ecCCCCCCCc---------cccceeCCCCceeccCCCCCCCcccCCCCCCCCCcceeeccC-CccCCCCCccccCCcc
Q 002049 794 TGKACPRGLY---------GVFCEECPVGTFKNVSGSDRALCRNCSSNELPHRALYIPIRG-GVTECPCPYKCVSERY 861 (975)
Q Consensus 794 ~g~~CP~G~y---------G~fC~eCP~GtYKn~~gs~~~~C~pCp~~~~p~ra~~i~~rg-gv~~~~Cpy~C~s~~y 861 (975)
-=+.||+|+| ...|++||.|||++..+. ...|++|.. .-+. ..|..... ....+.| .|.++.|
T Consensus 21 cC~~C~pG~~~~~~C~~~~~t~C~~C~~gty~~~~n~-~~~C~~C~~-~C~~-g~~~~~~Ct~t~d~~C--~C~~G~y 93 (173)
T 3alq_R 21 CCSKCSPGQHAKVFCTKTSDTVCDSCEDSTYTQLWNW-VPECLSCGS-RCSS-DQVETQACTREQNRIC--TCRPGWY 93 (173)
T ss_dssp EEECBCTTEEEEECCCSSCCCEEEECCTTEECCSSBC-CSSCEECCC-CCCT-TEEEEECCCSSSCCEE--EECTTEE
T ss_pred CCCCCCCCCeecccCCCCCCCcCCcCCCCccccCCCC-CCccCCCCC-cCCC-CCEEecCCCCCCCCee--ECCCCeE
Confidence 3478888864 346999999999987643 357988872 1222 23332221 2334567 5887777
No 15
>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor complex, cytokine, cytokine-cytokine recepto; 3.00A {Homo sapiens}
Probab=88.07 E-value=0.15 Score=50.67 Aligned_cols=62 Identities=21% Similarity=0.544 Sum_probs=38.4
Q ss_pred cCCCCCCCc-----cccceeCCCCceeccC--CCCCCCcccCCCCCCCCCcceeeccCCc-cCCCCCccccCCccc
Q 002049 795 GKACPRGLY-----GVFCEECPVGTFKNVS--GSDRALCRNCSSNELPHRALYIPIRGGV-TECPCPYKCVSERYH 862 (975)
Q Consensus 795 g~~CP~G~y-----G~fC~eCP~GtYKn~~--gs~~~~C~pCp~~~~p~ra~~i~~rggv-~~~~Cpy~C~s~~y~ 862 (975)
+..|++|.| +.-|..||.|+|.... ......|.+||.+++ ....+.. ....|.-.|.++++.
T Consensus 5 ~~~C~~g~Y~~~~~~~cC~~C~pG~~~~~~C~~~~~t~C~~C~~gty------~~~~n~~~~C~~C~~~C~~g~~~ 74 (173)
T 3alq_R 5 GSTCRLREYYDQTAQMCCSKCSPGQHAKVFCTKTSDTVCDSCEDSTY------TQLWNWVPECLSCGSRCSSDQVE 74 (173)
T ss_dssp --CCCTTEEEETTTTEEEECBCTTEEEEECCCSSCCCEEEECCTTEE------CCSSBCCSSCEECCCCCCTTEEE
T ss_pred cCcCCCCccccCCCCcCCCCCCCCCeecccCCCCCCCcCCcCCCCcc------ccCCCCCCccCCCCCcCCCCCEE
Confidence 468999976 3469999999998752 113579999997444 4322221 233444467776653
No 16
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*
Probab=87.31 E-value=0.21 Score=49.54 Aligned_cols=62 Identities=19% Similarity=0.396 Sum_probs=31.8
Q ss_pred cCCCCCCCc----------cccceeCCCC-ceeccCCCCCCCcccCCCCCCCCCcceeeccCC--ccCCCCCccccCCcc
Q 002049 795 GKACPRGLY----------GVFCEECPVG-TFKNVSGSDRALCRNCSSNELPHRALYIPIRGG--VTECPCPYKCVSERY 861 (975)
Q Consensus 795 g~~CP~G~y----------G~fC~eCP~G-tYKn~~gs~~~~C~pCp~~~~p~ra~~i~~rgg--v~~~~Cpy~C~s~~y 861 (975)
=+.||||+| -..|++||.| +|.+... ....|++|.. -.....+..++-. .+.+.| .|.++.|
T Consensus 44 C~~CppG~~v~~~Ct~~~~~t~C~pC~~g~ty~~~~n-~~~~C~~C~~--C~~~~g~~~~~~CT~t~dtvC--~C~~G~f 118 (156)
T 3tje_F 44 HKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAH-FSSKCRRCRL--CDEGHGLEVEINCTRTQNTKC--RCKPNFF 118 (156)
T ss_dssp SSCBCTTEEESSCCCSSSCCCCEEECCTTTEECSSCB-SCSCCEECCC--CCGGGTEEEEECCBTTBCCEE--EECTTEE
T ss_pred CCCCCCCCeECCcCCCCCCCCcceeCCCCCeeeccCC-CCCcCcCCCC--CCCCcceEEeccccCCCCCee--eCCCCCE
Confidence 356666654 2467777777 6776532 2356777664 3322122222222 123345 6776666
No 17
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=86.72 E-value=0.16 Score=57.76 Aligned_cols=40 Identities=20% Similarity=0.518 Sum_probs=30.2
Q ss_pred EecCCCCCCCc-----cc----cceeCCCCceeccCCCCCCCcccCCCCCCCC
Q 002049 793 VTGKACPRGLY-----GV----FCEECPVGTFKNVSGSDRALCRNCSSNELPH 836 (975)
Q Consensus 793 i~g~~CP~G~y-----G~----fC~eCP~GtYKn~~gs~~~~C~pCp~~~~p~ 836 (975)
+=...||||+. |. -|.+||.|.|. + |...|.+||.+..|+
T Consensus 484 ~CS~~C~pG~rk~~~~g~~CC~~C~~C~~~~~~--t--d~~~C~~Cp~~~wpn 532 (555)
T 2e4u_A 484 QCSDPCAPNEMKNMQPGDVCCWICIPCEPYEYL--V--DEFTCMDCGPGQWPT 532 (555)
T ss_dssp CSSCCCCTTTEEEECCSSSSCCEEEECCTTEEE--E--ETTEEEECCTTEEEC
T ss_pred eeCCCCCCCeeeeecCCCeeEEECccCCCceec--C--CCccceeCCcccCcC
Confidence 34478999983 22 39999999997 3 679999999755554
No 18
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*
Probab=86.08 E-value=0.55 Score=46.60 Aligned_cols=62 Identities=23% Similarity=0.385 Sum_probs=30.0
Q ss_pred eEecCCCCCCCc---cccceeCCCCceeccCCC---CCCCcccCCCC-CCCCCcceeeccCCccCCCCCccccCC
Q 002049 792 TVTGKACPRGLY---GVFCEECPVGTFKNVSGS---DRALCRNCSSN-ELPHRALYIPIRGGVTECPCPYKCVSE 859 (975)
Q Consensus 792 ti~g~~CP~G~y---G~fC~eCP~GtYKn~~gs---~~~~C~pCp~~-~~p~ra~~i~~rggv~~~~Cpy~C~s~ 859 (975)
+.-...||.+.| +.-|..||.|+|....-. +...|.|||.+ ++-...++.. ....|.+ |.++
T Consensus 26 ~~~~~~C~~~~Y~~~~~CC~~CppG~~v~~~Ct~~~~~t~C~pC~~g~ty~~~~n~~~-----~C~~C~~-C~~~ 94 (156)
T 3tje_F 26 TTVETQNLEGLHHDGQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSS-----KCRRCRL-CDEG 94 (156)
T ss_dssp -------------CCTTCSSCBCTTEEESSCCCSSSCCCCEEECCTTTEECSSCBSCS-----CCEECCC-CCGG
T ss_pred eecccCCCCCcEECcCeECCCCCCCCeECCcCCCCCCCCcceeCCCCCeeeccCCCCC-----cCcCCCC-CCCC
Confidence 344578999986 445899999999764322 14689999975 3432222211 2345664 7765
No 19
>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR superfamily, viral protein; HET: NAG; 2.65A {Human herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*
Probab=84.34 E-value=0.36 Score=47.77 Aligned_cols=39 Identities=18% Similarity=0.503 Sum_probs=27.0
Q ss_pred CCCCCCCc---cccceeCCCCceeccC--CCCCCCcccCCCCCC
Q 002049 796 KACPRGLY---GVFCEECPVGTFKNVS--GSDRALCRNCSSNEL 834 (975)
Q Consensus 796 ~~CP~G~y---G~fC~eCP~GtYKn~~--gs~~~~C~pCp~~~~ 834 (975)
..|+.|.| +.-|+.||.|+|.... ......|.|||.+++
T Consensus 2 ~~C~~g~Y~~~~~~C~~CppG~~~~~~C~~~~~t~C~~Cp~GtY 45 (167)
T 1jma_B 2 PSCKEDEYPVGSECCPKCSPGYRVKEACGELTGTVCEPCPPGTY 45 (167)
T ss_dssp --CCTTBCCBTTBCCBCBCTTEEEEECCCSSSCCEEEECCTTEE
T ss_pred CCCCCCCEECCCcCCCCCCCCCEeccCCCCCCCCcCCcCCCCcc
Confidence 46999975 4569999999998531 112469999997443
No 20
>3urf_Z Tumor necrosis factor receptor superfamily member; cystein-rich domain, beta-sandwich, cytokine; HET: NAG; 2.70A {Homo sapiens} PDB: 4e4d_R
Probab=83.72 E-value=0.54 Score=47.17 Aligned_cols=35 Identities=37% Similarity=0.903 Sum_probs=27.2
Q ss_pred CCCCCCCc---------cccceeCCCCceeccCCCCCCCcccCCC
Q 002049 796 KACPRGLY---------GVFCEECPVGTFKNVSGSDRALCRNCSS 831 (975)
Q Consensus 796 ~~CP~G~y---------G~fC~eCP~GtYKn~~gs~~~~C~pCp~ 831 (975)
..||+|++ ...|++||.|||++.. |+...|+||..
T Consensus 101 t~C~~G~~v~~~~t~~~dt~C~~C~~Gtfs~~~-ss~~~C~p~T~ 144 (171)
T 3urf_Z 101 RSCPPGFGVVQAGTPERNTVCKRCPDGFFSNET-SSKAPCRKHTN 144 (171)
T ss_dssp CCBCTTEEEEECCCSSSCCEEEECCTTEECSSC-BSSCCCEECCC
T ss_pred CcCCCCceEeecCccCCCcccccCCCCcccCCC-CCCCccccCCc
Confidence 67899973 3469999999999874 34688999874
No 21
>3urf_Z Tumor necrosis factor receptor superfamily member; cystein-rich domain, beta-sandwich, cytokine; HET: NAG; 2.70A {Homo sapiens} PDB: 4e4d_R
Probab=82.54 E-value=0.47 Score=47.62 Aligned_cols=34 Identities=29% Similarity=0.728 Sum_probs=25.8
Q ss_pred CCCCCCCc---------cccceeCCCCceeccCCCCCCCcccCC
Q 002049 796 KACPRGLY---------GVFCEECPVGTFKNVSGSDRALCRNCS 830 (975)
Q Consensus 796 ~~CP~G~y---------G~fC~eCP~GtYKn~~gs~~~~C~pCp 830 (975)
+.||+|+| ...|++||.|+|++... ....|++|.
T Consensus 21 ~~CppG~~~~~~Ct~~~~t~C~~C~~gty~~~~n-~~~~C~~C~ 63 (171)
T 3urf_Z 21 DKCPPGTYLKQHCTAKWKTVCAPCPDHYYTDSWH-TSDECLYCS 63 (171)
T ss_dssp ECBCTTEEEEECCCSSSCCEEEECCTTEECCSCB-CCSSCEECC
T ss_pred CCCCCCceecccCCCCCCCccccCCCCcEecCCC-CCCccccCc
Confidence 56666664 46799999999997642 257899998
No 22
>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D bond, glycoprotein, membrane, secreted, signal-anchor, transmembrane, apoptosis; 2.45A {Homo sapiens} PDB: 3mi8_D 3mhd_D
Probab=82.17 E-value=0.88 Score=45.77 Aligned_cols=45 Identities=29% Similarity=0.597 Sum_probs=32.7
Q ss_pred CCCCCCCc---------cccceeCCCCceeccCCCCCCCcccCCCCCCCCCcceeec
Q 002049 796 KACPRGLY---------GVFCEECPVGTFKNVSGSDRALCRNCSSNELPHRALYIPI 843 (975)
Q Consensus 796 ~~CP~G~y---------G~fC~eCP~GtYKn~~gs~~~~C~pCp~~~~p~ra~~i~~ 843 (975)
..||+|++ ...|++||.|||.+.. +....|+||.. -...+.++.+
T Consensus 103 s~C~pG~~v~~~~t~~~Dt~C~~C~~GtFs~~~-s~~~~C~p~t~--C~~~G~~~~~ 156 (176)
T 3k51_B 103 ASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASS-SSSEQCQPHRN--CTALGLALNV 156 (176)
T ss_dssp CCCCTTEEEEECCCSSSCCEEEECCTTEECCSC-SSSCCCEECCC--STTTTCCEEE
T ss_pred ccCCCCcEEeecCcccCCCccccCCCCcccCCC-CCCCcccCCCc--cCCCCeeEec
Confidence 68999984 3579999999999875 33689999985 4433444443
No 23
>3qd6_R CD40L receptor, tumor necrosis factor receptor superfamily member; immune regulator, cytokine-cytokine receptor compl; HET: NAG; 3.50A {Homo sapiens}
Probab=80.06 E-value=1.4 Score=44.00 Aligned_cols=36 Identities=17% Similarity=0.323 Sum_probs=25.4
Q ss_pred cCCCCCCCc---------cccceeCCCCceeccCCCCCCCcccCCC
Q 002049 795 GKACPRGLY---------GVFCEECPVGTFKNVSGSDRALCRNCSS 831 (975)
Q Consensus 795 g~~CP~G~y---------G~fC~eCP~GtYKn~~gs~~~~C~pCp~ 831 (975)
=+.||+|+| ...|++||.|+|++... ....|++|..
T Consensus 18 C~~CppG~~~~~~C~~~~~t~C~pC~~gty~~~~n-~~~~C~~C~~ 62 (177)
T 3qd6_R 18 CSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWN-RETHCHQHKY 62 (177)
T ss_dssp ECCBCTTBCCCBCCCSSCCCBCCBCCSSEECCSSB-CCSSCEECCC
T ss_pred CCCCCCCCEeccCCCCCCCCccccCCCCceecCCC-CCCcCCCCCc
Confidence 467777764 34799999999987542 1357888874
No 24
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R
Probab=80.00 E-value=0.59 Score=45.15 Aligned_cols=31 Identities=32% Similarity=0.760 Sum_probs=24.8
Q ss_pred CCCCCc-------cccceeCCCCceeccCCCCCCCcccCCC
Q 002049 798 CPRGLY-------GVFCEECPVGTFKNVSGSDRALCRNCSS 831 (975)
Q Consensus 798 CP~G~y-------G~fC~eCP~GtYKn~~gs~~~~C~pCp~ 831 (975)
|++|+| ..-|++||.|||++.. ...|+||..
T Consensus 85 C~~G~y~~~g~~~~~~C~~C~~Gtfs~~~---~~~C~~~t~ 122 (146)
T 2hey_R 85 CRAGTQPLDSYKPGVDCAPCPPGHFSPGD---NQACKPWTN 122 (146)
T ss_dssp ECTTEEESCSSSTTSSEEECCTTEECCST---TCCCEECCC
T ss_pred CCCCeeeCCCcccCcccccCCCCcccCCC---CCCCcCCCC
Confidence 777764 3469999999999863 578999984
No 25
>1du3_A Death receptor 5; trail, DR5, complex; 2.20A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1d0g_R 2h9g_R 1za3_R 1d4v_A
Probab=79.27 E-value=0.59 Score=44.75 Aligned_cols=48 Identities=17% Similarity=0.280 Sum_probs=31.3
Q ss_pred cccceeCCCCceeccCCCCCCCcccCCCC-CCCCCcceeeccCCc-cCCCCCccccCCcc
Q 002049 804 GVFCEECPVGTFKNVSGSDRALCRNCSSN-ELPHRALYIPIRGGV-TECPCPYKCVSERY 861 (975)
Q Consensus 804 G~fC~eCP~GtYKn~~gs~~~~C~pCp~~-~~p~ra~~i~~rggv-~~~~Cpy~C~s~~y 861 (975)
+.-|+.||.|+|.... ...|.||+.+ ++ ....... ....|. +|.++.+
T Consensus 22 ~~~C~~CppG~~~~~~---~t~C~pC~~g~ty------~~~~n~~~~C~~C~-~C~~g~~ 71 (130)
T 1du3_A 22 SPSEGLCPPGHHISED---GRDCISCKYGQDY------STHWNDLLFCLRCT-RCDSGEV 71 (130)
T ss_dssp CCBTTBBCTTEEECSS---SSCEEECCTTTEE------CCSSBCCSSCEECC-CCCTTEE
T ss_pred CCccCCCCCCceecCC---CCcCccCCCcCEE------eCCCCCCCcCcCCC-CCCccee
Confidence 5679999999999764 5799999974 33 3221111 133455 5887655
No 26
>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl, rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP signaling protein; 2.01A {Mus musculus} PDB: 3me2_R 3qbq_B 4giq_R* 3nzy_B
Probab=78.75 E-value=0.86 Score=47.34 Aligned_cols=35 Identities=26% Similarity=0.636 Sum_probs=26.6
Q ss_pred CCCCCCCc---------cccceeCCCCceeccCCCCCCCcccCCC
Q 002049 796 KACPRGLY---------GVFCEECPVGTFKNVSGSDRALCRNCSS 831 (975)
Q Consensus 796 ~~CP~G~y---------G~fC~eCP~GtYKn~~gs~~~~C~pCp~ 831 (975)
+.||+|++ ...|++||.|||++.. |....|+||..
T Consensus 130 s~C~pG~~v~~~ct~~~Dt~C~~C~~GtFs~~~-s~~~~C~p~T~ 173 (216)
T 3me4_A 130 TECAPGFGAQHPLQLNKDTVCTPCLLGFFSDVF-SSTDKCKPWTN 173 (216)
T ss_dssp CCBCTTEEECSSEETTSCCCEEECCTTEECCSC-BSSCCCEECCC
T ss_pred ccCCCCccccccCccCCCCccccCCCceecCCC-CCCCccccCCc
Confidence 57888873 3579999999998864 24678999874
No 27
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Probab=77.70 E-value=0.91 Score=44.58 Aligned_cols=41 Identities=37% Similarity=0.708 Sum_probs=31.1
Q ss_pred ceEecCCCCCCCccccceeCCCCceeccCC--CCCCCcccCCC
Q 002049 791 GTVTGKACPRGLYGVFCEECPVGTFKNVSG--SDRALCRNCSS 831 (975)
Q Consensus 791 Gti~g~~CP~G~yG~fC~eCP~GtYKn~~g--s~~~~C~pCp~ 831 (975)
|..+=..||++|.|..|+.|+.|||.+... .....|++|+=
T Consensus 16 g~~~C~~C~~g~~G~~Ce~C~~g~~g~~~~~~~~~~~C~~C~C 58 (162)
T 1klo_A 16 KEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQC 58 (162)
T ss_dssp CCEEECSCCTTEESTTSCEECTTEEEETTCTTSSCEEEEECCS
T ss_pred CCEEeCCCCCCCcCCCCcCCCCCCcCCcccccCCCCCCeeCcC
Confidence 344445899999999999999999987542 12357998874
No 28
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A
Probab=71.98 E-value=1.5 Score=48.23 Aligned_cols=44 Identities=30% Similarity=0.605 Sum_probs=30.0
Q ss_pred CCCCCCCc---------cccceeCCCCceeccCCCCCCCcccCCCCCCCCCcceee
Q 002049 796 KACPRGLY---------GVFCEECPVGTFKNVSGSDRALCRNCSSNELPHRALYIP 842 (975)
Q Consensus 796 ~~CP~G~y---------G~fC~eCP~GtYKn~~gs~~~~C~pCp~~~~p~ra~~i~ 842 (975)
+.||+|++ ...|+.||.|||++.. +....|+||.. ......++.
T Consensus 107 t~CppG~gV~~~cT~tsDTvC~~Cp~GTFSd~~-Ss~~~C~pcT~--C~~~G~~v~ 159 (313)
T 3u3p_A 107 TVCPVGWGVRKKGTETEDVRCKQCARGTFSDVP-SSVMKCKAYTD--CLSQNLVVI 159 (313)
T ss_dssp CCBCTTEEEEECCCSSSCCEEEECCTTEECCSC-BSSCCCEECCC--SGGGTCEEE
T ss_pred ccCCCCCeeeecCCCCCCCccccCCCCeecCCC-CCCcccccCCc--cCCCCceEe
Confidence 68888873 3579999999998864 23578888874 443344443
No 29
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Probab=71.22 E-value=1.3 Score=43.59 Aligned_cols=35 Identities=26% Similarity=0.700 Sum_probs=27.9
Q ss_pred CCCCCCccccceeCCCCceeccCC-CCCCCcccCCC
Q 002049 797 ACPRGLYGVFCEECPVGTFKNVSG-SDRALCRNCSS 831 (975)
Q Consensus 797 ~CP~G~yG~fC~eCP~GtYKn~~g-s~~~~C~pCp~ 831 (975)
.|++++.|.+|+.|+.|||-+..- .....|++|+=
T Consensus 79 ~C~~g~~G~~Ce~C~~Gy~g~~~~~~~~~~C~~C~C 114 (162)
T 1klo_A 79 KCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACAC 114 (162)
T ss_dssp CBCTTEETTTTCEECTTEEECTTCSSGGGSEEECCC
T ss_pred CCCCCCcCCCcCcCchhhcCCccccCCCCCCeeccC
Confidence 599999999999999999987542 12356998874
No 30
>3qd6_R CD40L receptor, tumor necrosis factor receptor superfamily member; immune regulator, cytokine-cytokine receptor compl; HET: NAG; 3.50A {Homo sapiens}
Probab=68.65 E-value=2.6 Score=42.14 Aligned_cols=41 Identities=22% Similarity=0.408 Sum_probs=27.9
Q ss_pred cCCCCCCCc---cccceeCCCCceeccCC--CCCCCcccCCCCCCC
Q 002049 795 GKACPRGLY---GVFCEECPVGTFKNVSG--SDRALCRNCSSNELP 835 (975)
Q Consensus 795 g~~CP~G~y---G~fC~eCP~GtYKn~~g--s~~~~C~pCp~~~~p 835 (975)
+..|+.+.| +.-|..||.|+|....= .....|.||+.+++-
T Consensus 3 ~~~C~~~~Y~~~~~CC~~CppG~~~~~~C~~~~~t~C~pC~~gty~ 48 (177)
T 3qd6_R 3 PTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECLPCGESEFL 48 (177)
T ss_dssp ---CCSSCEECSSSEECCBCTTBCCCBCCCSSCCCBCCBCCSSEEC
T ss_pred cccCCCCcEECCCeECCCCCCCCEeccCCCCCCCCccccCCCCcee
Confidence 357999975 34499999999975431 135699999986554
No 31
>4fhq_A Tumor necrosis factor receptor superfamily member; cysteine rich domain, TNF receptor, structural genomics, PSI protein structure initiative; 2.25A {Homo sapiens} PDB: 2aw2_B*
Probab=66.48 E-value=2.3 Score=41.08 Aligned_cols=39 Identities=18% Similarity=0.493 Sum_probs=27.6
Q ss_pred CCCCCCCc---cccceeCCCCceeccCC--CCCCCcccCCCCCC
Q 002049 796 KACPRGLY---GVFCEECPVGTFKNVSG--SDRALCRNCSSNEL 834 (975)
Q Consensus 796 ~~CP~G~y---G~fC~eCP~GtYKn~~g--s~~~~C~pCp~~~~ 834 (975)
..|+.+.| +.=|..||.|+|....= .....|.|||.+++
T Consensus 4 ~~C~~~eY~~~~~CC~~CppG~~~~~~C~~~~~t~C~pC~~gty 47 (134)
T 4fhq_A 4 PSCKEDEYPVGSECCPKCSPGYRVKEACGELTGTVCEPCPPGTY 47 (134)
T ss_dssp CCCCTTEEEETTEEEECBCTTEEEEECCC--CCCEEEECCTTEE
T ss_pred CCCCcccEECcCcCCCCCCCCCEecccCCCCCCCcccCCCCCCE
Confidence 57999875 33499999999965321 12468999997554
No 32
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}
Probab=66.35 E-value=2.1 Score=47.87 Aligned_cols=33 Identities=21% Similarity=0.488 Sum_probs=27.3
Q ss_pred CCCCCCCccccceeCCCCceeccCCCCCCCcccCCC
Q 002049 796 KACPRGLYGVFCEECPVGTFKNVSGSDRALCRNCSS 831 (975)
Q Consensus 796 ~~CP~G~yG~fC~eCP~GtYKn~~gs~~~~C~pCp~ 831 (975)
..|.+++.|..|++|..|||.+.. ...|+||..
T Consensus 337 ~~C~~n~~G~~Ce~C~~Gyyg~~~---~~~C~pCaA 369 (375)
T 4aqt_A 337 TNCRDNTDGAKCERCRENFFRLGN---TEACSPAAA 369 (375)
T ss_dssp CSCTTTEESTTSCEECSSEECCTT---CSSCEEC--
T ss_pred CCCCCCCcCCCCCCCCcCcccCcC---CCCCcCCcC
Confidence 469999999999999999998753 567999985
No 33
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}
Probab=62.67 E-value=6.8 Score=44.31 Aligned_cols=35 Identities=23% Similarity=0.530 Sum_probs=28.3
Q ss_pred CCCCCCccccceeCCCCceeccC----CCCCCCcccCCC
Q 002049 797 ACPRGLYGVFCEECPVGTFKNVS----GSDRALCRNCSS 831 (975)
Q Consensus 797 ~CP~G~yG~fC~eCP~GtYKn~~----gs~~~~C~pCp~ 831 (975)
.|+.++.|..|+.|..|||.+.. ......|+||+=
T Consensus 289 ~C~hnT~G~~CErC~pGy~g~p~~~at~~~~~~C~pC~C 327 (403)
T 2y38_A 289 ACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNC 327 (403)
T ss_dssp CCCTTEESSSCCEECTTCCSSCCCCCCSSCCCCCCCCCC
T ss_pred ECcCcCcCCCCCCCCccccCCcccccccCCCcccccccc
Confidence 79999999999999999997632 123458999984
No 34
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat, transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo sapiens}
Probab=61.92 E-value=2.8 Score=48.22 Aligned_cols=31 Identities=32% Similarity=0.666 Sum_probs=22.5
Q ss_pred CCCCCCC--ccccce-eCCCCceeccCCCCCCCcccCC
Q 002049 796 KACPRGL--YGVFCE-ECPVGTFKNVSGSDRALCRNCS 830 (975)
Q Consensus 796 ~~CP~G~--yG~fC~-eCP~GtYKn~~gs~~~~C~pCp 830 (975)
..|. .| ++..|+ +||.|+|.+. +...|+||.
T Consensus 272 ~sC~-~~~~~~~~CV~~CP~g~~~~~---~~~~C~~C~ 305 (486)
T 2hr7_A 272 QGCH-QYVIHNNKCIPECPSGYTMNS---SNLLCTPCL 305 (486)
T ss_dssp SSCC-CCEEETTEEESSCCTTEEECT---TSCBEEECS
T ss_pred cccc-cEeeECCEecccCCCCcccCC---CCCccccCC
Confidence 4565 44 456676 7999999875 256899998
No 35
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}
Probab=59.32 E-value=2.5 Score=48.44 Aligned_cols=33 Identities=27% Similarity=0.580 Sum_probs=12.4
Q ss_pred CCCCCCccccceeCCCCceeccCCCCCCCcccCCC
Q 002049 797 ACPRGLYGVFCEECPVGTFKNVSGSDRALCRNCSS 831 (975)
Q Consensus 797 ~CP~G~yG~fC~eCP~GtYKn~~gs~~~~C~pCp~ 831 (975)
.|++||.|..|++|+.|+|.... +...|.+|+=
T Consensus 463 ~C~~g~~G~~Ce~C~~G~~g~~~--~~~~C~~C~C 495 (525)
T 4aqs_A 463 YCKRLVTGQRCDQCLPQHWGLSN--DLDGCRPCDC 495 (525)
T ss_dssp CBCTTCCSTTTCC----------------------
T ss_pred ECCCCCcCCCcccCCCCccCCCC--CCCCCcCCCC
Confidence 59999999999999999997644 4567999873
No 36
>2odl_A Adhesin; HMW1, secretion domain, beta helix, cell adhesion; 1.92A {Haemophilus influenzae}
Probab=58.06 E-value=8.5 Score=43.22 Aligned_cols=61 Identities=31% Similarity=0.629 Sum_probs=42.2
Q ss_pred cccccceEEEEeeeeccCCceeEEeccCCCCC------CCC-C----------------------CCccceEEEEeccCC
Q 002049 709 GGGSGGTILLFIHTLVLGESSSISTTGGRGSH------SGG-G----------------------GGGGGRIHFHWSDIP 759 (975)
Q Consensus 709 GGGSGGSIlL~~~~l~l~~~g~lsA~GG~G~~------~gG-G----------------------GGGGGRI~f~w~~i~ 759 (975)
..+.||.|.|.-+.+.+...+.|.|.|=.|+. ..+ + -|-||||.+ |++.
T Consensus 251 ~~g~GG~V~i~g~~v~l~~gA~I~asG~~GG~v~iGGd~qG~~~~~~~~A~~t~v~~~s~I~a~a~g~GG~viv-wsd~- 328 (373)
T 2odl_A 251 QQAKGGKLMITGDKVTLKTGAVIDLSGKEGGETYLGGDERGEGKNGIQLAKKTSLEKGSTINVSGKEKGGRAIV-WGDI- 328 (373)
T ss_dssp EEEECCEEEEEEEEEEECTTCEEECCEEECCEEEESSCGGGCCGGGCCCCSEEEECTTCEEECCEEEECCEEEE-ECSE-
T ss_pred CCCCCCEEEEEcceEEecCCCEEEeeccCCCcEEEeCCccccCCccccccceEEEcCCCEEEeeccCCCcEEEE-eccc-
Confidence 46799999999999888877888886533321 000 1 135788755 8863
Q ss_pred CCCccccccccceEEEecCC
Q 002049 760 IGDEYLPLASVNGSIDARGG 779 (975)
Q Consensus 760 ~gd~y~pia~~~G~I~~~GG 779 (975)
..|.|.|..+||
T Consensus 329 --------t~f~G~I~ArGg 340 (373)
T 2odl_A 329 --------ALIDGNINAQGS 340 (373)
T ss_dssp --------EEECSEEECCCS
T ss_pred --------eeEeEEEEEecC
Confidence 257899999994
No 37
>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor immunomodulator, TNF alpha receptor; 2.0A {Vaccinia virus}
Probab=55.46 E-value=3.4 Score=40.10 Aligned_cols=42 Identities=21% Similarity=0.524 Sum_probs=22.5
Q ss_pred CCCCCCcc---------ccc---eeCCCCceecc-CCCCCCCcccCCCCCCCCCc
Q 002049 797 ACPRGLYG---------VFC---EECPVGTFKNV-SGSDRALCRNCSSNELPHRA 838 (975)
Q Consensus 797 ~CP~G~yG---------~fC---~eCP~GtYKn~-~gs~~~~C~pCp~~~~p~ra 838 (975)
.|++|+|= .+| ..||.|++... +-+....|.+||.+++...+
T Consensus 82 ~C~~G~yc~~~~~~~~C~~C~~~t~C~pG~~v~~~t~~~dt~C~~C~~GtfS~~~ 136 (142)
T 2uwi_A 82 HCDSNSYCLLKASDGNCVTCAPKTKCGRGYGKKGEDEMGNTICKKCRKGTYSKTG 136 (142)
T ss_dssp EECTTEEEEEECTTSCEEEEEECCCCCTTEEEEEECTTSCEEEEECC--------
T ss_pred eCCCCcEecccCCCCCCCCCcCCCcCCcCEeeCCCCCCCCCcccCCCCCcccCCc
Confidence 38889872 257 67899998521 11234579999987776544
No 38
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}
Probab=51.71 E-value=10 Score=42.44 Aligned_cols=36 Identities=25% Similarity=0.500 Sum_probs=28.4
Q ss_pred CCCCCCCccccceeCCCCceecc----CCCCCCCcccCCC
Q 002049 796 KACPRGLYGVFCEECPVGTFKNV----SGSDRALCRNCSS 831 (975)
Q Consensus 796 ~~CP~G~yG~fC~eCP~GtYKn~----~gs~~~~C~pCp~ 831 (975)
-.|++++.|..|++|-.|+|.+. +..+...|++|.=
T Consensus 274 C~C~~nt~G~~Ce~C~~gy~~~p~~~g~~~~~~~C~~C~C 313 (375)
T 4aqt_A 274 CNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDC 313 (375)
T ss_dssp ECCCTTEESTTSCEECTTCCSSCCCCCCSSCCCCCCCCCG
T ss_pred eeCcCCCcCCCcccCCCCCcCCCCCCCccCCCCCCCCCcC
Confidence 47999999999999999999653 2234457999873
No 39
>2odl_A Adhesin; HMW1, secretion domain, beta helix, cell adhesion; 1.92A {Haemophilus influenzae}
Probab=51.13 E-value=16 Score=41.00 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=20.4
Q ss_pred cccCCccEEEEEEeee--cCeEEEEecCC
Q 002049 258 GGGSGGSIYVKAHRMT--GNGKISASGGN 284 (975)
Q Consensus 258 GGGSGGSI~L~a~~l~--g~G~isA~GG~ 284 (975)
..+.||.|.|...++. ...+|.|.|-.
T Consensus 251 ~~g~GG~V~i~g~~v~l~~gA~I~asG~~ 279 (373)
T 2odl_A 251 QQAKGGKLMITGDKVTLKTGAVIDLSGKE 279 (373)
T ss_dssp EEEECCEEEEEEEEEEECTTCEEECCEEE
T ss_pred CCCCCCEEEEEcceEEecCCCEEEeeccC
Confidence 4679999999998765 35788886643
No 40
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E
Probab=48.63 E-value=7.4 Score=47.28 Aligned_cols=25 Identities=36% Similarity=0.673 Sum_probs=18.2
Q ss_pred ccccce-eCCCCceeccCCCCCCCcccCC
Q 002049 803 YGVFCE-ECPVGTFKNVSGSDRALCRNCS 830 (975)
Q Consensus 803 yG~fC~-eCP~GtYKn~~gs~~~~C~pCp 830 (975)
++..|+ +||.|+|.+. +...|+||.
T Consensus 280 ~~~~Cv~~CP~g~~~~~---~~~~C~~C~ 305 (897)
T 2dtg_E 280 HNNKCIPECPSGYTMNS---SNLLCTPCL 305 (897)
T ss_dssp ETTEEESSCCSSCEECS---SSCBEECCC
T ss_pred ECCEEccCCCCCccccC---CCCeeccCC
Confidence 455675 7999988875 245799997
No 41
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex, transferase-growth F complex; HET: NAG FUC BMA MAN; 2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
Probab=38.97 E-value=15 Score=42.39 Aligned_cols=33 Identities=21% Similarity=0.621 Sum_probs=24.1
Q ss_pred CCCCCCc---cccce-eCCCCceeccCCCCCCCcccCC
Q 002049 797 ACPRGLY---GVFCE-ECPVGTFKNVSGSDRALCRNCS 830 (975)
Q Consensus 797 ~CP~G~y---G~fC~-eCP~GtYKn~~gs~~~~C~pCp 830 (975)
.||.+|+ ...|+ +||.|+|.+.. .....|+||.
T Consensus 270 ~Cp~~~~l~~~g~Cv~~Cp~G~y~~~~-~~~~~C~~C~ 306 (501)
T 1mox_A 270 KCPRNYVVTDHGSCVRACGADSYEMEE-DGVRKCKKCE 306 (501)
T ss_dssp SCCTTCEECTTSBEESSCCSSCCCBCS-SSSCBCCCC-
T ss_pred ccCcccEeccCCEEeccCCCCCeecCC-CCCCcCcCCC
Confidence 7999973 45797 89999998642 1235899996
No 42
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Probab=34.96 E-value=17 Score=41.90 Aligned_cols=23 Identities=39% Similarity=0.840 Sum_probs=14.8
Q ss_pred cce-eCCCCceeccCCCCCCCcccCC
Q 002049 806 FCE-ECPVGTFKNVSGSDRALCRNCS 830 (975)
Q Consensus 806 fC~-eCP~GtYKn~~gs~~~~C~pCp 830 (975)
.|+ +||.|++.+.. +...|+||.
T Consensus 272 ~Cv~~CP~g~~~~~~--~~~~C~~C~ 295 (478)
T 1igr_A 272 ECMQECPSGFIRNGS--QSMYCIPCE 295 (478)
T ss_dssp EEESSCCTTEEESST--TCSCEEECS
T ss_pred eecccCCCCCcccCC--CcceeccCC
Confidence 343 48888776653 346788886
No 43
>2a55_A C4B-binding protein; complement, SCR, CCP module, immune system; NMR {Homo sapiens}
Probab=33.86 E-value=47 Score=31.01 Aligned_cols=66 Identities=14% Similarity=0.209 Sum_probs=44.6
Q ss_pred CCceEecCCCCCCC---ccccceeCCC-CceeccCCCCCCCcc--cCCCCCCCCCcceeeccCCccCCCCCccccCC
Q 002049 789 GNGTVTGKACPRGL---YGVFCEECPV-GTFKNVSGSDRALCR--NCSSNELPHRALYIPIRGGVTECPCPYKCVSE 859 (975)
Q Consensus 789 ~nGti~g~~CP~G~---yG~fC~eCP~-GtYKn~~gs~~~~C~--pCp~~~~p~ra~~i~~rggv~~~~Cpy~C~s~ 859 (975)
..|+.....|.+|| .|..=..|-. |++.. ...|+ .|+.-..|..+.+...+.-.....|-|.|+++
T Consensus 25 ~~g~~v~y~C~~Gy~~l~G~~~~~C~~~G~Ws~-----~p~C~~~~C~~p~~~~nG~~~~~~~~~~g~~v~~~C~~G 96 (133)
T 2a55_A 25 KTGTTLKYTCLPGYVRSHSTQTLTCNSDGEWVY-----NTFCIYKRCRHPGELRNGQVEIKTDLSFGSQIEFSCSEG 96 (133)
T ss_dssp CTTCCCCCBCCTTEESCCSCCCCEECSSSSEEC-----CCCSEECBCCCCCCCTTBCCCCCSTTBSSCBCCCCBCTT
T ss_pred CCCCEEEEEeCCCCcccCCCCEEEECCCCeECC-----CCcCccCCCcCCCccCCceEEcCCCCcCCCEEEEEcCCC
Confidence 45778889999999 3655555655 78875 36896 69964445555554333334567899999865
No 44
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=33.27 E-value=18 Score=41.27 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=29.0
Q ss_pred ceEecCCCCCCCccccceeCCCCceeccCC---------CCCCCcccCCC
Q 002049 791 GTVTGKACPRGLYGVFCEECPVGTFKNVSG---------SDRALCRNCSS 831 (975)
Q Consensus 791 Gti~g~~CP~G~yG~fC~eCP~GtYKn~~g---------s~~~~C~pCp~ 831 (975)
|+..=. |+.++.|..|+.|..++|.+... .....|+||+-
T Consensus 311 g~~~C~-C~~~ttG~~CE~C~pgy~~~P~~~gt~~p~~~g~~~~C~pC~C 359 (426)
T 3zyj_B 311 SKLTCE-CEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSIS 359 (426)
T ss_dssp TEEEEC-CCTTEESSSSCEECTTCCSSCCCCCBCCSSSSCBCCCCCCCCC
T ss_pred CCceee-CCCCCcCCCccccccccccCcccCCcccccCCCCCCcccCCCC
Confidence 443444 99999999999999999854221 13457999885
No 45
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=26.95 E-value=31 Score=38.88 Aligned_cols=20 Identities=35% Similarity=0.921 Sum_probs=17.2
Q ss_pred CCCCCCcccccee-CCCCcee
Q 002049 797 ACPRGLYGVFCEE-CPVGTFK 816 (975)
Q Consensus 797 ~CP~G~yG~fC~e-CP~GtYK 816 (975)
.|++||.|..|+. |+.|+|-
T Consensus 266 ~C~~G~~G~~C~~~C~~G~~G 286 (423)
T 2gy5_A 266 SCATGWKGLQCNEACHPGFYG 286 (423)
T ss_dssp ECCBTCBSGGGCBCCCTTBCS
T ss_pred EeCCCcccccccCccCCCCcC
Confidence 5999999999986 9999884
No 46
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain, unliganded, autoinhibited, ATP nucleotide-binding, tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A {Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A
Probab=21.13 E-value=35 Score=40.03 Aligned_cols=30 Identities=30% Similarity=0.738 Sum_probs=23.3
Q ss_pred CCCCCCC--ccccc-eeCCCCceeccCCCCCCCcccCC
Q 002049 796 KACPRGL--YGVFC-EECPVGTFKNVSGSDRALCRNCS 830 (975)
Q Consensus 796 ~~CP~G~--yG~fC-~eCP~GtYKn~~gs~~~~C~pCp 830 (975)
+.||..| ....| .+||.|+|++ ...|.||.
T Consensus 271 ~~Cp~~~~~~~~~Cv~~CP~g~~~~-----~~~C~~C~ 303 (551)
T 3i2t_A 271 KECPGHLLRDNGACVRSCPQDKMDK-----GGECVPCN 303 (551)
T ss_dssp SSCCTTSEEETTEEESSCCTTEEES-----SSBEEECS
T ss_pred hhCCHHHcccCCcccccCCCCCccc-----CCeeeECC
Confidence 4899887 45568 4899999974 25899997
No 47
>3j00_Z Cell division protein FTSQ, ingrowth of WALL at septum; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; HET: PEV PGV; 7.10A {Escherichia coli O157}
Probab=20.53 E-value=58 Score=30.05 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=18.9
Q ss_pred ccc-cccccccchHhhhccccccccccce
Q 002049 919 RID-HSFPFLESLNEVMETNRTEESQSHV 946 (975)
Q Consensus 919 ~iD-~sfp~leSL~Ev~~t~r~eDl~~Hv 946 (975)
+++ .+| |..+|+++.+. +|.+..|.
T Consensus 60 ~~~~g~F-Ft~DL~~iq~a--lE~~~~~~ 85 (98)
T 3j00_Z 60 LGEPGTF-MTQDVNIIQTQ--IEQRLQHA 85 (98)
T ss_dssp CCCCCCC-CCCCCCCCCCC--CCCCCCCC
T ss_pred hccCCCc-eeeCHHHHHHH--HHHHHHHh
Confidence 566 788 88888887666 77777775
Done!