Query 002052
Match_columns 975
No_of_seqs 345 out of 2083
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 15:25:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002052.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002052hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02950 4-alpha-glucanotransf 100.0 9E-223 2E-227 2016.7 84.1 902 20-922 6-909 (909)
2 PLN03236 4-alpha-glucanotransf 100.0 7E-184 2E-188 1624.0 55.6 714 210-933 3-743 (745)
3 PRK14508 4-alpha-glucanotransf 100.0 6E-129 1E-133 1130.3 47.7 485 271-932 3-497 (497)
4 PLN02635 disproportionating en 100.0 4E-128 9E-133 1122.2 43.2 488 271-933 26-527 (538)
5 PF02446 Glyco_hydro_77: 4-alp 100.0 5E-127 1E-131 1121.2 31.6 490 279-925 1-495 (496)
6 PRK11052 malQ 4-alpha-glucanot 100.0 6E-124 1E-128 1118.9 50.5 543 216-932 98-692 (695)
7 TIGR00217 malQ 4-alpha-glucano 100.0 8E-121 2E-125 1064.5 42.1 483 272-931 13-513 (513)
8 PRK14507 putative bifunctional 100.0 2E-117 4E-122 1119.7 49.9 542 218-933 129-725 (1693)
9 PRK14510 putative bifunctional 100.0 2E-117 4E-122 1121.2 45.7 483 272-932 722-1221(1221)
10 COG1640 MalQ 4-alpha-glucanotr 100.0 1E-114 3E-119 994.5 38.5 496 272-928 11-515 (520)
11 cd05815 CBM20_DPE2_repeat1 Dis 99.8 1.5E-19 3.3E-24 169.5 11.6 101 24-124 1-101 (101)
12 PF00686 CBM_20: Starch bindin 99.8 8.6E-20 1.9E-24 169.6 9.1 88 166-255 1-92 (96)
13 PF00686 CBM_20: Starch bindin 99.8 4E-19 8.7E-24 165.1 9.5 88 22-110 1-89 (96)
14 cd05816 CBM20_DPE2_repeat2 Dis 99.8 8.6E-19 1.9E-23 164.0 11.1 97 168-264 1-98 (99)
15 cd05808 CBM20_alpha_amylase Al 99.8 2.1E-18 4.6E-23 159.6 11.6 95 23-125 1-95 (95)
16 cd05811 CBM20_glucoamylase Glu 99.8 3.6E-18 7.8E-23 161.5 12.6 103 19-124 3-106 (106)
17 cd05807 CBM20_CGTase CGTase, C 99.8 2.7E-18 5.8E-23 161.2 10.3 90 165-255 1-94 (101)
18 cd05808 CBM20_alpha_amylase Al 99.7 1.6E-17 3.4E-22 153.8 10.8 85 167-253 1-85 (95)
19 cd05820 CBM20_novamyl Novamyl 99.7 1.6E-17 3.4E-22 156.7 10.4 89 166-255 2-94 (103)
20 cd05467 CBM20 The family 20 ca 99.7 3.7E-17 8.1E-22 151.3 11.7 92 25-124 2-96 (96)
21 cd05810 CBM20_alpha_MTH Glucan 99.7 2.1E-17 4.6E-22 154.1 9.9 88 167-255 1-91 (97)
22 cd05811 CBM20_glucoamylase Glu 99.7 5E-17 1.1E-21 153.8 11.5 90 164-255 4-97 (106)
23 cd05807 CBM20_CGTase CGTase, C 99.7 4.3E-17 9.4E-22 153.1 10.9 99 21-124 1-101 (101)
24 cd05818 CBM20_water_dikinase P 99.7 8.2E-17 1.8E-21 148.7 11.8 82 22-110 1-82 (92)
25 cd05817 CBM20_DSP Dual-specifi 99.7 4.6E-17 9.9E-22 152.7 10.1 83 25-110 2-85 (100)
26 cd05818 CBM20_water_dikinase P 99.7 1E-16 2.3E-21 148.0 10.9 84 167-255 2-85 (92)
27 cd05816 CBM20_DPE2_repeat2 Dis 99.7 1.6E-16 3.5E-21 148.7 11.6 95 24-122 1-98 (99)
28 cd05809 CBM20_beta_amylase Bet 99.7 1.1E-16 2.4E-21 149.9 9.8 86 166-252 2-90 (99)
29 cd05467 CBM20 The family 20 ca 99.7 1.9E-16 4.2E-21 146.5 10.2 84 169-253 2-87 (96)
30 cd05815 CBM20_DPE2_repeat1 Dis 99.7 2.5E-16 5.4E-21 147.8 10.5 86 168-255 1-90 (101)
31 cd05813 CBM20_genethonin_1 Gen 99.7 3.6E-16 7.8E-21 145.1 11.3 92 23-125 1-93 (95)
32 cd05817 CBM20_DSP Dual-specifi 99.7 3.5E-16 7.5E-21 146.7 9.6 81 169-251 2-84 (100)
33 cd05820 CBM20_novamyl Novamyl 99.6 9.6E-16 2.1E-20 144.5 10.9 96 22-125 2-102 (103)
34 cd05809 CBM20_beta_amylase Bet 99.6 1.9E-15 4.2E-20 141.5 11.1 96 22-124 2-99 (99)
35 cd05810 CBM20_alpha_MTH Glucan 99.6 1.3E-15 2.9E-20 142.1 9.8 86 23-111 1-89 (97)
36 cd05813 CBM20_genethonin_1 Gen 99.6 4.4E-15 9.5E-20 137.9 9.7 81 167-250 1-81 (95)
37 cd05806 CBM20_laforin Laforin 99.6 7.6E-15 1.6E-19 139.8 11.1 86 167-253 1-98 (112)
38 cd05806 CBM20_laforin Laforin 99.5 7.2E-14 1.6E-18 133.1 12.2 86 23-110 1-97 (112)
39 cd05814 CBM20_Prei4 Prei4, N-t 99.5 8.9E-14 1.9E-18 134.7 9.0 86 23-109 1-95 (120)
40 cd05814 CBM20_Prei4 Prei4, N-t 99.5 1.4E-13 3.1E-18 133.3 8.4 82 168-250 2-94 (120)
41 PLN02950 4-alpha-glucanotransf 99.4 2E-12 4.3E-17 161.3 12.3 91 163-255 5-99 (909)
42 PRK05402 glycogen branching en 98.2 0.00029 6.2E-09 88.1 25.2 272 23-351 28-317 (726)
43 PRK14705 glycogen branching en 97.6 0.0072 1.6E-07 78.6 24.2 136 167-320 638-790 (1224)
44 PRK12313 glycogen branching en 97.3 0.0066 1.4E-07 75.0 17.7 171 167-352 38-223 (633)
45 PRK12568 glycogen branching en 96.9 0.023 5E-07 70.6 17.0 167 168-351 139-321 (730)
46 PLN02447 1,4-alpha-glucan-bran 96.7 0.038 8.2E-07 68.9 17.2 171 168-351 115-302 (758)
47 COG0296 GlgB 1,4-alpha-glucan 96.6 0.033 7E-07 68.0 15.3 158 167-339 36-210 (628)
48 PRK14706 glycogen branching en 96.5 0.073 1.6E-06 65.8 17.9 168 168-351 39-219 (639)
49 cd02859 AMPKbeta_GBD_like AMP- 96.4 0.011 2.5E-07 53.2 7.3 53 23-88 2-54 (79)
50 cd02861 E_set_proteins_like E 96.2 0.013 2.8E-07 53.0 6.9 54 167-231 2-55 (82)
51 cd02861 E_set_proteins_like E 96.2 0.015 3.3E-07 52.5 7.3 54 23-88 2-55 (82)
52 cd02859 AMPKbeta_GBD_like AMP- 96.2 0.024 5.1E-07 51.2 8.1 62 167-245 2-63 (79)
53 TIGR01515 branching_enzym alph 96.1 0.23 4.9E-06 61.4 18.6 164 168-351 29-208 (613)
54 TIGR02402 trehalose_TreZ malto 95.9 0.14 2.9E-06 62.5 15.3 154 169-351 1-162 (542)
55 TIGR02104 pulA_typeI pullulana 94.6 0.58 1.2E-05 57.8 15.3 165 168-346 20-218 (605)
56 PLN02316 synthase/transferase 92.4 4.1 9E-05 53.0 18.1 258 21-320 329-632 (1036)
57 KOG2421 Predicted starch-bindi 91.7 0.23 4.9E-06 58.5 5.3 68 23-90 44-116 (417)
58 cd02854 Glycogen_branching_enz 91.2 1.2 2.5E-05 42.2 8.6 64 168-238 6-74 (99)
59 smart00642 Aamy Alpha-amylase 90.8 0.68 1.5E-05 47.7 7.2 59 291-351 14-72 (166)
60 TIGR02102 pullulan_Gpos pullul 89.3 10 0.00022 50.1 17.4 146 169-320 329-504 (1111)
61 PF02922 CBM_48: Carbohydrate- 87.8 1.4 3E-05 39.6 6.1 62 167-236 11-75 (85)
62 cd02858 Esterase_N_term Estera 86.6 2.1 4.6E-05 39.0 6.7 55 23-88 6-60 (85)
63 PLN02960 alpha-amylase 86.4 11 0.00025 48.1 14.8 57 291-351 411-468 (897)
64 KOG2421 Predicted starch-bindi 85.6 0.88 1.9E-05 53.7 4.5 68 167-235 44-118 (417)
65 COG1640 MalQ 4-alpha-glucanotr 85.4 0.14 3.1E-06 61.2 -2.1 95 488-582 69-178 (520)
66 TIGR02403 trehalose_treC alpha 85.0 1.8 3.9E-05 52.9 6.9 64 283-351 14-77 (543)
67 PF00128 Alpha-amylase: Alpha 84.9 1.5 3.3E-05 48.0 5.8 28 293-320 1-28 (316)
68 cd02858 Esterase_N_term Estera 83.7 3.2 7E-05 37.9 6.4 54 167-231 6-60 (85)
69 PRK03705 glycogen debranching 83.7 20 0.00043 45.0 15.2 56 292-347 173-235 (658)
70 PRK10785 maltodextrin glucosid 82.6 24 0.00052 43.8 15.4 54 292-351 175-228 (598)
71 PF03423 CBM_25: Carbohydrate 81.7 6.2 0.00014 36.3 7.5 76 166-248 3-82 (87)
72 cd02854 Glycogen_branching_enz 80.3 7.5 0.00016 36.7 7.7 65 23-96 5-75 (99)
73 TIGR02100 glgX_debranch glycog 77.9 32 0.00069 43.5 14.3 55 292-346 178-239 (688)
74 PF03423 CBM_25: Carbohydrate 77.7 12 0.00026 34.5 8.0 75 22-106 3-82 (87)
75 cd02688 E_set E or "early" set 75.9 12 0.00025 32.7 7.3 57 24-90 5-61 (83)
76 PF14701 hDGE_amylase: glucano 75.2 5.3 0.00011 47.1 6.1 59 282-348 11-69 (423)
77 PRK10933 trehalose-6-phosphate 74.7 6.1 0.00013 48.5 6.8 58 289-351 26-83 (551)
78 PF02922 CBM_48: Carbohydrate- 72.3 9.9 0.00022 34.0 6.0 62 23-93 11-75 (85)
79 PF02903 Alpha-amylase_N: Alph 72.3 8 0.00017 37.5 5.7 81 11-95 11-93 (120)
80 cd02688 E_set E or "early" set 71.4 16 0.00034 31.9 7.0 59 168-235 5-63 (83)
81 TIGR02456 treS_nterm trehalose 71.3 7.5 0.00016 47.5 6.5 57 290-351 22-78 (539)
82 TIGR02103 pullul_strch alpha-1 71.0 26 0.00056 45.4 11.3 57 168-232 136-193 (898)
83 PRK14510 putative bifunctional 70.7 72 0.0016 43.1 15.6 60 292-351 181-249 (1221)
84 COG0708 XthA Exonuclease III [ 69.6 4 8.7E-05 45.2 3.3 79 486-571 141-226 (261)
85 TIGR01531 glyc_debranch glycog 68.2 44 0.00096 45.0 12.5 57 282-346 121-177 (1464)
86 TIGR02401 trehalose_TreY malto 64.0 23 0.00049 45.4 8.6 29 292-320 12-40 (825)
87 PLN02447 1,4-alpha-glucan-bran 63.9 17 0.00037 46.1 7.5 90 474-572 300-395 (758)
88 PF00128 Alpha-amylase: Alpha 63.8 5.7 0.00012 43.4 3.2 95 478-574 56-175 (316)
89 PLN03244 alpha-amylase; Provis 62.9 14 0.00031 46.6 6.5 86 473-570 440-534 (872)
90 TIGR02456 treS_nterm trehalose 62.1 25 0.00054 43.0 8.5 24 474-497 76-99 (539)
91 TIGR02403 trehalose_treC alpha 62.0 22 0.00047 43.7 7.9 23 474-496 75-97 (543)
92 PF02903 Alpha-amylase_N: Alph 60.9 21 0.00046 34.5 6.1 72 164-240 20-95 (120)
93 PLN02316 synthase/transferase 60.6 51 0.0011 43.4 11.1 86 161-251 325-417 (1036)
94 TIGR01515 branching_enzym alph 57.6 27 0.00059 43.5 7.8 86 474-570 206-298 (613)
95 COG1523 PulA Type II secretory 56.1 11 0.00024 47.3 4.0 57 293-350 195-259 (697)
96 PRK09441 cytoplasmic alpha-amy 54.0 37 0.0008 40.9 7.9 92 474-572 81-238 (479)
97 PRK12313 glycogen branching en 53.6 34 0.00074 42.7 7.8 91 474-570 220-312 (633)
98 PLN02361 alpha-amylase 52.5 60 0.0013 38.4 9.1 44 274-320 10-53 (401)
99 cd02860 Pullulanase_N_term Pul 51.4 47 0.001 30.9 6.6 58 168-234 9-69 (100)
100 PLN02877 alpha-amylase/limit d 51.0 1.4E+02 0.003 39.3 12.5 58 168-232 223-280 (970)
101 PRK09505 malS alpha-amylase; R 49.8 39 0.00084 42.7 7.4 89 474-569 292-463 (683)
102 PRK14706 glycogen branching en 49.1 51 0.0011 41.3 8.2 85 474-571 217-310 (639)
103 TIGR02402 trehalose_TreZ malto 48.3 45 0.00099 40.9 7.6 85 474-572 160-249 (542)
104 COG0366 AmyA Glycosidases [Car 45.6 30 0.00066 41.0 5.4 57 290-351 23-79 (505)
105 PRK10933 trehalose-6-phosphate 44.3 54 0.0012 40.4 7.3 23 474-496 81-103 (551)
106 cd02853 MTHase_N_term Maltooli 42.7 77 0.0017 28.6 6.4 51 168-232 9-59 (85)
107 PRK12568 glycogen branching en 42.1 56 0.0012 41.5 7.1 89 474-571 319-412 (730)
108 PLN00196 alpha-amylase; Provis 42.0 71 0.0015 38.1 7.7 91 473-572 91-208 (428)
109 cd02857 CD_pullulan_degrading_ 40.9 1.3E+02 0.0028 28.2 8.0 64 24-90 17-81 (116)
110 COG0160 GabT 4-aminobutyrate a 40.1 31 0.00067 41.3 4.2 41 476-524 245-286 (447)
111 cd02855 Glycogen_branching_enz 39.9 2.2E+02 0.0047 26.3 9.2 57 168-234 22-80 (106)
112 PLN02960 alpha-amylase 39.0 63 0.0014 41.7 6.8 89 474-571 466-560 (897)
113 cd02855 Glycogen_branching_enz 38.6 1.3E+02 0.0027 27.9 7.4 56 24-90 22-79 (106)
114 TIGR02104 pulA_typeI pullulana 35.0 89 0.0019 38.9 7.3 22 475-496 230-251 (605)
115 cd02860 Pullulanase_N_term Pul 34.8 1.1E+02 0.0024 28.4 6.3 57 24-90 9-68 (100)
116 cd02856 Glycogen_debranching_e 34.1 1.1E+02 0.0024 28.7 6.2 55 169-233 11-66 (103)
117 PRK03705 glycogen debranching 32.9 1.1E+02 0.0024 38.6 7.6 56 168-232 20-75 (658)
118 PLN02784 alpha-amylase 32.8 1.5E+02 0.0033 38.3 8.7 88 474-572 568-678 (894)
119 PF14784 ECIST_Cterm: C-termin 31.4 25 0.00054 34.9 1.3 22 803-824 87-108 (126)
120 KOG3625 Alpha amylase [Carbohy 30.4 1.9E+02 0.0041 37.5 8.7 151 167-347 29-188 (1521)
121 TIGR02102 pullulan_Gpos pullul 29.2 1.3E+02 0.0029 40.1 7.6 23 474-496 555-577 (1111)
122 PF00479 G6PD_N: Glucose-6-pho 27.8 28 0.0006 36.6 1.1 22 550-571 153-177 (183)
123 TIGR02401 trehalose_TreY malto 27.5 1.1E+02 0.0023 39.5 6.2 13 560-572 247-259 (825)
124 PF08006 DUF1700: Protein of u 26.6 44 0.00094 34.8 2.3 52 714-781 15-67 (181)
125 cd02856 Glycogen_debranching_e 26.2 1.3E+02 0.0027 28.3 5.1 55 24-89 10-65 (103)
126 cd02853 MTHase_N_term Maltooli 25.9 1.6E+02 0.0034 26.5 5.5 51 24-89 9-59 (85)
127 COG0296 GlgB 1,4-alpha-glucan 25.2 2E+02 0.0044 36.0 7.8 71 21-102 34-105 (628)
128 PRK05402 glycogen branching en 24.8 1.6E+02 0.0036 37.5 7.3 66 168-246 29-95 (726)
129 PF14871 GHL6: Hypothetical gl 22.1 1.2E+02 0.0025 30.3 4.2 76 476-561 46-123 (132)
130 cd02852 Isoamylase_N_term Isoa 21.4 2.9E+02 0.0063 26.5 6.7 59 169-233 9-70 (119)
131 PRK10785 maltodextrin glucosid 21.2 1E+02 0.0022 38.4 4.3 33 292-324 222-254 (598)
132 PRK14511 maltooligosyl trehalo 21.1 1.7E+02 0.0037 38.1 6.3 55 293-351 17-71 (879)
133 COG2945 Predicted hydrolase of 20.9 75 0.0016 34.0 2.6 37 273-309 57-99 (210)
No 1
>PLN02950 4-alpha-glucanotransferase
Probab=100.00 E-value=9e-223 Score=2016.71 Aligned_cols=902 Identities=79% Similarity=1.355 Sum_probs=838.5
Q ss_pred CceEEEEEEEEEECCCCCEEEEEeccCCcCCCCCCCcccccccCCCCCccEEEEEEcCCCceEEEEEEEEeCCCCeEEee
Q 002052 20 VKSLTVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIAVPIGFSCEYSYYVVDDRKNLLRWE 99 (975)
Q Consensus 20 ~~~~~V~F~V~~~t~~Gq~L~VvGs~~eLG~W~~~~al~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv~d~~g~~i~WE 99 (975)
+..|+|+|+|++.|.+||+|+|+||+++||+|++++|++|++.+..+++.|+++|.+|.+..|||||++++.+|++++||
T Consensus 6 ~~~V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~~~ieYKYv~v~~~g~vi~WE 85 (909)
T PLN02950 6 LKSVTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYVVDDNKNVLRWE 85 (909)
T ss_pred CCcEEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCCCeEEEEEEEEeCCCceeeee
Confidence 46799999999999999999999999999999999999998875444578999999999989999999998889988999
Q ss_pred cCCCceEEcCCCCCCCceEEEecccccc-ccCCCCcccchhhhhcccccccccccccccccccCCCCceEEEEEEEeccc
Q 002052 100 MGKKRKLLLHETIKDGEVVELHDLWQTG-GDALPFRSAFKNVIFRRSFSLDIERSDGLIQNKLEQEDSVLVRFKICIPNI 178 (975)
Q Consensus 100 ~g~NR~l~l~~~~~~g~~v~v~D~W~~~-~~~~~~ssaF~~vi~~~~~~~~~~~~~~~~~~~~~~~~~v~V~F~v~~~~~ 178 (975)
++.||.+.++..+..+..+++.|.|++. +++++++|+|++|+|++......++|++++... ..++.++|+|+|+++++
T Consensus 86 ~g~NR~l~lp~~~~~~~~~~i~D~W~~~~~~~~~~~s~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~V~F~v~~~~~ 164 (909)
T PLN02950 86 AGKKRKLVLPEGLQGGELVELHDLWQKSGPEALFFRSAFKDVIFRHSWGVNTERPLGALNKP-PAPDEIVVRFKIACPRL 164 (909)
T ss_pred cCCCeeEECCcccCCCceEEEEEEecCCchhhhhhHHHHhhhhccccccccccccccccccc-CCCCceeEEEEEecCcc
Confidence 9999999998643345689999999975 488999999999999987543446777765543 34778999999999988
Q ss_pred CCCCEEEEEcCccccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEEECCCCCeeEeeCCCeeEEecCCCC-CC
Q 002052 179 EEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKSGKTGNISLETGANRNLNVDFSNN-QP 257 (975)
Q Consensus 179 ~~Ge~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~l~~~~~~~eYKyvi~~~~g~v~WE~G~NR~~~~p~~~~-~p 257 (975)
.+||+|+|+||+++||+|++++|++|++..++.|++++++|++..+|||||++++++|.+.||.|+||.+++|.+.. .+
T Consensus 165 ~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~~p~W~~~v~lp~~~~~~EYKyv~~~~~g~v~WE~g~NR~~~~p~~~~~~~ 244 (909)
T PLN02950 165 EEGTSVYVTGSIAQLGNWQVDDGLKLNYTGDSIWEADCLVPKSDFPIKYKYALQTAEGLVSLELGVNRELSLDSSSGKPP 244 (909)
T ss_pred CCCCeEEEEechhhcCCCCcccccccccCCCCcEEEEEEecCCCceEEEEEEEEcCCCceEEeeCCCceeecCcccCCce
Confidence 99999999999999999999999999999999999999999866799999999999899999999999999997654 34
Q ss_pred ceEeeccccccCCCCcceEEeeecCccCCCCCCcccCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCcCC
Q 002052 258 RYIFLSDGMMREMPWRGAGVAVPMFSVRSEADLGVGEFLDLKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLS 337 (975)
Q Consensus 258 ~~~~~~~~~~~~~~~R~~Gv~~~l~SLrs~~~~GiGdf~dl~~~~d~~~~~G~~~~QilPl~~t~~~~~~~~~SPYs~~S 337 (975)
.+++..+..++...+|+|||++|||||||+++||||||+||++|||||+++|+++|||||||||+.++++.+||||+|+|
T Consensus 245 ~~~~~~~~~~~~~~~R~~Gi~~~l~SLrS~~s~GIGDf~dl~~~id~~a~~G~~~~QilPl~~t~~~~~~~~SsPYs~~S 324 (909)
T PLN02950 245 SYIVASDGAFREMPWRGAGVAVPVFSIRSEEDVGVGEFLDLKLLVDWAVKSGLHLVQLLPVNDTSVHGMWWDSYPYSSLS 324 (909)
T ss_pred EEEecccccccCCCccceEEEEecccCCCCCCCCeeCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCCcCccc
Confidence 44556777787778999999999999999999999999999999999999999999999999998777777889999999
Q ss_pred ccccCccccChhhhcccCCHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHhcccCcc
Q 002052 338 VFALHPLYLRVQALSEKMPEDIKKEIEKAKVQLDKKDVDYEATLATKLAIARKVFNQEKDLILNSSAFQNFFSENEDWLK 417 (975)
Q Consensus 338 ~falNPlyI~l~~l~~~~~~~~~~~~~~~~~~l~~~~vDY~~v~~~K~~~L~~~f~~~~~~~~~~~~f~~F~~~~~~wL~ 417 (975)
+|||||+||||+.|++.++.+..+++.+++.+++.+.|||++|.++|+++|+++|+++.+......+|++||++|+.||+
T Consensus 325 ~falNPlyI~l~~l~~~l~~~~~~~~~~~~~~~~~~~VDY~~v~~~K~~~L~~~f~~f~~~~~~~~~F~~F~~~~~~WL~ 404 (909)
T PLN02950 325 VFALHPLYLRVQALSERLPEDLKAEIQKARKQLDKKDVDYEATLATKLSIAKKVFDLEKDLTLNSSSFKKFFSENEHWLK 404 (909)
T ss_pred ccccChhhcCHHHHHhhhhhhHHHHHHHhhhccCcccccHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhCccHHH
Confidence 99999999999999876655556677776666666889999999999999999999986543345789999999999999
Q ss_pred hhhchHHHHhhcCCCCCCCCCcCCCCCHHHHHHHHhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccc
Q 002052 418 PYAAFCFLRDFFDTSDHSQWGRFSHYSKDKLAKLISEDSLHYDIIRFHYYVQFHLHIQLSEAAEYARKKGVVLKGDLPIG 497 (975)
Q Consensus 418 ~yA~F~aL~~~~~~~~w~~Wp~~~~~~~~~l~~~~~~~~~~~~~i~f~~~lQ~~~~~Ql~~~~~yA~~~gI~L~gDLpig 497 (975)
+||+||||+++|++.+|++||+++.+.+++++++....++++++|+||+|+||+|++||+++++||+++||+||||||||
T Consensus 405 ~yA~F~aL~~~~~~~~w~~Wp~~~~~~~~~~~~l~~~~~~~~~~i~f~~~lQ~~~~~Ql~~~~~yA~~~Gi~L~GDLpig 484 (909)
T PLN02950 405 PYAAFCFLRDFFETSDHSQWGRFSDFSDEKLEKLVSPGSLHYDTICFHYYIQYHLHSQLSEAAEYARKKGVVLKGDLPIG 484 (909)
T ss_pred HHHHHHHHHHHhCCCCcccCcccccccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeece
Confidence 99999999999999999999986555555666665556789999999999999999999999999999999999999999
Q ss_pred cCCCchhhccCcccccccCcccCCCCCCCcCCCCCCCCCCCHHHHHHhhhHHHHHHHHHHhccCCEEEeccccccceeee
Q 002052 498 VDRNSVDTWVYPNLFRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMSKYFTAYRIDHILGFFRIWE 577 (975)
Q Consensus 498 v~~dSaDvW~~~~lF~~d~~aGaPPD~Fs~~GQnWG~P~ynw~~l~~~gy~ww~~Rlr~~~~~~d~lRIDH~~Gf~r~W~ 577 (975)
|++||||||++|++|+++.++|||||+||++|||||+|+|||++|+++||+||++||+++++|||++||||||||||+|+
T Consensus 485 V~~dSaDvWa~p~lF~l~~~aGaPPD~Fs~~GQ~WG~P~ynw~~l~~~gy~ww~~Rlr~~~~~~d~lRIDH~~Gf~r~W~ 564 (909)
T PLN02950 485 VDRNSVDTWVYPNLFRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMAKYFTAYRIDHILGFFRIWE 564 (909)
T ss_pred eCCCcHHHhcCHHHhcCCCccCCCCCcCCcccccCCCCCcCHHHHHhcCcHHHHHHHHHHHHhCCEEEEecchhhcEeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcccccceeecCCcccHHHHHhccccccccccccchhhhhhHHhhCCchHHHHHhhhccccCCcceeccccchHHH
Q 002052 578 LPEHAMTGLIGKFRPSIPLSQEELEREGIWDFDRLTRPYIRLEHLQEKFGSSWTYIAANFLSEFQKGRYEFTEDCNTEKK 657 (975)
Q Consensus 578 IP~~~~~g~~G~~~p~~p~~~~el~~~G~~~~~r~~~p~i~~~~l~~~fg~~~~~i~~~~l~~~~~g~y~f~~~~~~e~~ 657 (975)
||+++.+|++|+|+|++|||++||+++||||++|||+|||+.++|.++||+++++|+++||++.++|.|.|||+|+||++
T Consensus 565 IP~~~~~a~~G~w~~~~~~s~~el~~~gl~~~~r~~~p~i~~~~l~~~fg~~~~~v~~~~~~~~~~~~y~~k~~~~te~~ 644 (909)
T PLN02950 565 LPAHAVTGLVGKFRPSIPLSQEELEQEGIWDFDRLSRPYIRQEFLQEKFGDRWTEIASNFLNEYQKGCYEFKEDCNTEKK 644 (909)
T ss_pred ecCCCccccCceEecCCCCCHHHHHhcCCccHhhhccccccHHHHHHHhcccHHHHHHHHHHhcCCCcEEeccccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcccccchhhhHHHHHHHHhhhceeeecCCCCCCcccccccccCCcccCCChhHHHHHHHHhhhhhhhhhh
Q 002052 658 IAAKLKTCAEKSMLLDSEDKTRRDLFDLIQNIVLIRDPEDSKKFYPRFNLEDTSSFMDLDDHSKNVLKRLYYDYYFHRQE 737 (975)
Q Consensus 658 i~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~v~li~~~~~~~~~~pr~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~r~~ 737 (975)
|.++++...++...+++++++|++|++|++|||||+|++++|+|||||.+++|+||++|++++|++|++||+||||+||+
T Consensus 645 i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~~d~~~~~~f~pr~~~~~~~s~~~L~~~~~~~~~~l~~~~~~~r~~ 724 (909)
T PLN02950 645 IAAKLKRLAEKSWLLEEEEKIRRGLFDLLQNVVLIRDPEDPRKFYPRFNLEDTSSFQDLDDHSKNVLKRLYYDYYFHRQE 724 (909)
T ss_pred HHHhhccccccchhhhhHHHHHHHHHHHhhceeEEecCCCCCCcccceecccccchhhcCHHHHHHHHHHHHHHHhhcCH
Confidence 99888655433333778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccccccccCCCccEEeecCCCCCCcHHHHHHHhCCCceEEeeecCCCCCCCCCCCCCCCCcEEecCCCCchh
Q 002052 738 NLWRENALKTLPALLNSSDMMACGEDLGLIPSCVHPVMEELGLIGLRIQRMPSEPGLEFGIPSQYNYMTVCAPSCHDCST 817 (975)
Q Consensus 738 ~~w~~~~~~~L~~l~~~t~~lv~gEDLG~vp~~V~~~l~~lgi~g~rV~~f~~~~~~~f~~p~~y~~~sVa~tsTHD~~T 817 (975)
++|+++|+++||.|+++|+||||||||||||+||++||++|||+|+|||||+++++..|.+|++|||+||||+|||||+|
T Consensus 725 ~~w~~~a~~~L~~l~~~t~ml~cgEDLG~vp~~v~~vm~~l~i~~l~iqr~~~~~~~~f~~~~~y~y~sV~t~stHD~~t 804 (909)
T PLN02950 725 DLWRENALKTLPALLNSSDMLACGEDLGLVPACVHPVMQELGLLGLRIQRMPSEPGLEFGIPSQYSYMTVCAPSCHDCST 804 (909)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecccCcCccchHHHHHHhCCcceEEEeccCCCCCCCCChhhCCcceeeecCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHcCCCceeccchhhhhcCccccCCCCCCccccCCCCCC
Q 002052 818 LRAWWEEDEERRRRFFKNVVGSDALPPSQCLPDITHFILRQHVESPSMWAIFPLQDLLALKEDYTTRPATEETINDPTNP 897 (975)
Q Consensus 818 lrgWW~~~~~~~~~~~~~~l~~~g~~p~~~~~~~~~~ii~~~~~S~s~l~i~plQD~L~l~~~~~~~~~~~eriN~Pg~~ 897 (975)
||+||+++.+++++|+.++|++.|.+|..|+++++++||++|+.|+|||||+||||||+|+++++.+++++||||+|+++
T Consensus 805 lr~WWe~~~~~~~~~~~~~l~~~g~~p~~~~~~~~~~il~~~l~s~S~~~i~~~qD~la~~~~~~~~~~~~erIN~P~~~ 884 (909)
T PLN02950 805 LRAWWEEDEERRERFYKHVLGSDGPPPSQCVPDVAHFILQQHVEAPSMWAIFPLQDLLALKEEYTTRPANEETINDPTNP 884 (909)
T ss_pred HHHHHhhCHHHHHHHHHHHhCcCCCCCccCCHHHHHHHHHHhcCCCcceehhhHHHHHhCCHhhccCCcccceeeCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCChhhhhCCHHHHHHH
Q 002052 898 RHYWRYRVHVTLESLQKDKELKTTV 922 (975)
Q Consensus 898 ~~nW~~Rl~~~le~L~~~~~~~~~i 922 (975)
+||||||||++||+|++|.+++++|
T Consensus 885 ~h~W~yR~~~~le~l~~~~~~~~~i 909 (909)
T PLN02950 885 KHYWRFRVHVTLESLLADKDLLATI 909 (909)
T ss_pred cccceeccCCCHHHHhhChhhhhcC
Confidence 9999999999999999999998764
No 2
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=100.00 E-value=7.2e-184 Score=1623.97 Aligned_cols=714 Identities=50% Similarity=0.912 Sum_probs=649.6
Q ss_pred CcEEEEEeccCCCCceeeeEEEECCCCCeeEeeCCCeeEEecCCCCCCceEeecccccc-CCCCcceEEeeecCccCCCC
Q 002052 210 SVWEADCVIQRGDFPIKYKYCKSGKTGNISLETGANRNLNVDFSNNQPRYIFLSDGMMR-EMPWRGAGVAVPMFSVRSEA 288 (975)
Q Consensus 210 ~~W~~~v~l~~~~~~~eYKyvi~~~~g~v~WE~G~NR~~~~p~~~~~p~~~~~~~~~~~-~~~~R~~Gv~~~l~SLrs~~ 288 (975)
+.|..+.+..+...+++|||+....+..+ =+.-.||.+.. .+.++..+..++ ...+|++||++|||||||+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~~R~aGill~l~SLrS~~ 75 (745)
T PLN03236 3 ALRDGADTPEAAAAAKACPLDDDPRTETP-ARVLGDRAAAT------ERRIIHRDGHFRHGGAWKGSGMALPVFSLRSAE 75 (745)
T ss_pred CccccccChhhhhccccCCccCCCcccch-hhhcccccCCC------CcchhhhhhhhccCcchhhheeeeccccCCCCC
Confidence 57888888888888999999887643221 12233444332 222334445555 35689999999999999999
Q ss_pred CCcccCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCcCCccccCccccChhhhcccC------------C
Q 002052 289 DLGVGEFLDLKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQALSEKM------------P 356 (975)
Q Consensus 289 ~~GiGdf~dl~~~~d~~~~~G~~~~QilPl~~t~~~~~~~~~SPYs~~S~falNPlyI~l~~l~~~~------------~ 356 (975)
||||||||||++|||||+++|+++|||||||+|+..+++.+||||||+|+|||||+|||++.|++.. .
T Consensus 76 s~GIGDfgdL~~fvD~~a~~G~~~~QiLPL~~t~~~~~~~dSSPYsp~S~fAlNPlyIdle~L~e~~~~~~~~~~~~~~l 155 (745)
T PLN03236 76 SVGAGDFGDLEALVDFAAEAGMSVVQLLPVNDTCVHGTFWDSYPYSSLSVHALHPLYLKLKELVEEAANAAAAGPDAGRL 155 (745)
T ss_pred CCCcccHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCCcCcccccccChHHcCHHHhhhhhhhcccccchhhhh
Confidence 9999999999999999999999999999999998777777889999999999999999999998641 1
Q ss_pred HHHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHhcccCcchhhchHHHHhhcCCCCCCC
Q 002052 357 EDIKKEIEKAKVQLDKKDVDYEATLATKLAIARKVFNQEKDLILNSSAFQNFFSENEDWLKPYAAFCFLRDFFDTSDHSQ 436 (975)
Q Consensus 357 ~~~~~~~~~~~~~l~~~~vDY~~v~~~K~~~L~~~f~~~~~~~~~~~~f~~F~~~~~~wL~~yA~F~aL~~~~~~~~w~~ 436 (975)
.++.+++.+++..++.+.|||++|.++|.++|+++|+++.......++|++||++|+.||++||+||||+++|++.+|+.
T Consensus 156 ~~~~~el~~~~~~~~~~~VDY~~V~~~K~~~Lr~af~~f~~~~~~~~~F~~F~~~~~~WL~dYAlF~ALke~~~~~~w~~ 235 (745)
T PLN03236 156 AALAAEIDAAKHALDLKEIDYEATMKEKLMFAKRAFEADGAKFLASDACERFVKANASWLKPYAVFCALRDLFGTAEHWR 235 (745)
T ss_pred hhhHHHHHHhhhccCccceeHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCCccC
Confidence 12234555555455557899999999999999999999865433457899999999999999999999999999999999
Q ss_pred CCc-CCCCCHHHHHHHHhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccccCCCchhhccCccccccc
Q 002052 437 WGR-FSHYSKDKLAKLISEDSLHYDIIRFHYYVQFHLHIQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTWVYPNLFRMN 515 (975)
Q Consensus 437 Wp~-~~~~~~~~l~~~~~~~~~~~~~i~f~~~lQ~~~~~Ql~~~~~yA~~~gI~L~gDLpigv~~dSaDvW~~~~lF~~d 515 (975)
||+ ++.++++++++++...++++++|+||+|+||+|++||+++++||+++||.|||||||||++||||||++|++|+++
T Consensus 236 WP~~~~~~~~~al~~~~~~~~~~~~eI~f~~flQ~~~~~Q~~~~~~yA~~~GI~L~GDLPIgVa~dSaDvWa~p~lF~ld 315 (745)
T PLN03236 236 WGDLFATFAAAILAKIDCPGGDLYESTRFFFYLQYHLDRQLRRAAAHAAAKGVILKGDLPIGVDKASVDTWMHPKLFRMD 315 (745)
T ss_pred CChhhccCCHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeeceeCCCcHHHhcCHHHhcCC
Confidence 997 5889999999987666788999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCCCcCCCCCCCCCCCHHHHHHhhhHHHHHHHHHHhccCCEEEeccccccceeeeecCCCcccccceeecCCc
Q 002052 516 TSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMSKYFTAYRIDHILGFFRIWELPEHAMTGLIGKFRPSIP 595 (975)
Q Consensus 516 ~~aGaPPD~Fs~~GQnWG~P~ynw~~l~~~gy~ww~~Rlr~~~~~~d~lRIDH~~Gf~r~W~IP~~~~~g~~G~~~p~~p 595 (975)
.++|||||+||++|||||+|+|||++|+++||+||++||+++++|||++||||||||+|+|+||+++.+|++|+|+|++|
T Consensus 316 ~~aGAPPD~FS~~GQnWG~P~YnW~~l~~dgY~WWr~Rlr~~~~~~dalRIDH~~Gf~R~W~IP~~~~ta~~G~w~ps~p 395 (745)
T PLN03236 316 TSTGAPPDAFDANGQNWGFPTYDWEEMAEDDYAWWRARMQHLEQFFSAIRIDHILGFFRIWELPAHAKTGRLGRFRPSLP 395 (745)
T ss_pred CCcCCCCCCCCcccCcCCCCCcCHHHHHhcCcHHHHHHHHHHHHhCCeEEeechhhhceeeeecCCCccccCceeeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHhccccccccccccchhhhhhHHhhCCchHHHHHhhhcccc---------CCcceeccccchHHHHHH--HHhh
Q 002052 596 LSQEELEREGIWDFDRLTRPYIRLEHLQEKFGSSWTYIAANFLSEFQ---------KGRYEFTEDCNTEKKIAA--KLKT 664 (975)
Q Consensus 596 ~~~~el~~~G~~~~~r~~~p~i~~~~l~~~fg~~~~~i~~~~l~~~~---------~g~y~f~~~~~~e~~i~~--~l~~ 664 (975)
||++||+++|||+++|||+|||+.++|.++||+++++|+++||++++ +|.|.|||+|+||++|.+ +++.
T Consensus 396 ~s~~el~~~Gl~~~~r~~~P~i~~~~l~~~fg~~~~~v~~~~l~~~~~~~~~~~~~~~~y~~k~e~~te~~i~~~~~~~~ 475 (745)
T PLN03236 396 IRKDELAARGLWDLDRLCEPWIQSEELEALFGDNDGEAAGRFFEETDAETKPDGTTRGLWKFRKEFDTEQAIFASEALKP 475 (745)
T ss_pred CCHHHHHhcCCcchhhhccccccHHHHHHHhcccHHHHHHHHHHhhccccccccccCCeeeechhhhhHHHHHhhhcccc
Confidence 99999999999999999999999999999999999999999999987 678999999999999987 6655
Q ss_pred hhhccccc-chhhhHHHHHHHHhhhceeeecCCCCCCcccccccccCCcccCCChhHHHHHHHHhhhhhhhhhhHHHHHh
Q 002052 665 CAEKSMLL-DSEDKTRRDLFDLIQNIVLIRDPEDSKKFYPRFNLEDTSSFMDLDDHSKNVLKRLYYDYYFHRQENLWREN 743 (975)
Q Consensus 665 ~~~~~~~~-~~~~~~~~~L~~l~~~v~li~~~~~~~~~~pr~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~r~~~~w~~~ 743 (975)
+.+++.|. ...+++|++|+++++|||||+|++++++|||||.+++|+||++|++++|++|++||+||||+||+++|+++
T Consensus 476 ~~~~~~~~~~~~~~~~~gL~~l~~nv~~i~d~~~~~~f~Pr~~~~~t~s~~~L~~~~k~~~~~L~~dy~~~r~~~~W~~~ 555 (745)
T PLN03236 476 RDDFPDHLNDEQEELRAGLMQLFQNRCLLRDPDDADAFYPRFEFEETTSFQALDDWARDALRDLSDDYFFARQDATWREN 555 (745)
T ss_pred ccccchhhhhhHHHHHHHHHHHhcCeeeeecCCCCcCccccccccccchhhhcCHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 45554442 22488999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccccCCCccEEeecCCCCCCcHHHHHHHhCCCceEEeeecCCC-CCCCCCCCCCCCCcEEecCCCCchhHHHHH
Q 002052 744 ALKTLPALLNSSDMMACGEDLGLIPSCVHPVMEELGLIGLRIQRMPSEP-GLEFGIPSQYNYMTVCAPSCHDCSTLRAWW 822 (975)
Q Consensus 744 ~~~~L~~l~~~t~~lv~gEDLG~vp~~V~~~l~~lgi~g~rV~~f~~~~-~~~f~~p~~y~~~sVa~tsTHD~~TlrgWW 822 (975)
|+++||.|+++|+||||||||||||+||++||++|||+|||||||++++ +..|.+|++|||+||||||||||+|||+||
T Consensus 556 a~k~L~~l~~~t~mlvcgEDLG~vP~~V~~vm~eL~Il~LrIqRmpk~~~~~~F~~~~~ypy~SV~t~StHD~stLR~WW 635 (745)
T PLN03236 556 ARKTLPALLKCTEMLVCGEDLGFTPMCVPPVLDELGILGLRIQRMPHDGESGEFGRPERYPYETVCSPSCHDTMTTRAWW 635 (745)
T ss_pred HHHHHHHHhcCCCeEEehhhcCCCchhHHHHHHHcCCCceEEeecCCCCCCCcCCChhhCCCceeEeCCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999997 689999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHcCCCceeccchhhhhcCccccCCCCCCccccCCCCCCCCCcc
Q 002052 823 EEDEERRRRFFKNVVGSDALPPSQCLPDITHFILRQHVESPSMWAIFPLQDLLALKEDYTTRPATEETINDPTNPRHYWR 902 (975)
Q Consensus 823 ~~~~~~~~~~~~~~l~~~g~~p~~~~~~~~~~ii~~~~~S~s~l~i~plQD~L~l~~~~~~~~~~~eriN~Pg~~~~nW~ 902 (975)
+++.+++++|+.. . ..|. |..|+++++++||++|+.|||||||+||||||||+++++.+++++||||+|++++||||
T Consensus 636 ee~~~~~~~~~~~-~-~~g~-p~~~~~~~~~~Il~~~l~s~Sml~I~~~QD~lal~~~l~~~~~~~erIN~P~~~~h~Wr 712 (745)
T PLN03236 636 EADAARRARYAEL-F-QAGN-DDACEPHVMRAILRQHIASPSSIAIFPAQDLLALDEEYAKRPAEEETINDPTNPKHYWR 712 (745)
T ss_pred hhCHHHHHHHHHh-c-CCCC-CCCCCHHHHHHHHHHHhcCchhhhhhhHHHHhccChhhccCCchHhheeCCCCCCcCce
Confidence 9999998888633 3 3554 88999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCChhhhhCCHHHHHHHHHHHHHhCCCC
Q 002052 903 YRVHVTLESLQKDKELKTTVKDLVCASGRSC 933 (975)
Q Consensus 903 ~Rl~~~le~L~~~~~~~~~i~~l~~~~gR~~ 933 (975)
||||++||+|+++.+++++|++||+.+||.+
T Consensus 713 yR~~~~lE~L~~~~~~~~~i~~li~~sgr~~ 743 (745)
T PLN03236 713 FRIHVACEDLLANAAFLGEIKDLVREGGQMP 743 (745)
T ss_pred eccCCCHHHHhhcHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999954
No 3
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=100.00 E-value=6e-129 Score=1130.34 Aligned_cols=485 Identities=29% Similarity=0.547 Sum_probs=431.5
Q ss_pred CCcceEEeeecCccCCCCCCcccCHH-HHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCcCCccccCccccChh
Q 002052 271 PWRGAGVAVPMFSVRSEADLGVGEFL-DLKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQ 349 (975)
Q Consensus 271 ~~R~~Gv~~~l~SLrs~~~~GiGdf~-dl~~~~d~~~~~G~~~~QilPl~~t~~~~~~~~~SPYs~~S~falNPlyI~l~ 349 (975)
..|+|||++||||| +.+||||||| ||++|||||+++|+++|||||||+|+. +.|||+|+|+||+||+|||++
T Consensus 3 ~~R~~Gv~~~l~SL--~~~~GiGDfg~dl~~~id~~~~~G~~~~qilPl~~~~~-----~~SPY~~~S~~alnplyI~l~ 75 (497)
T PRK14508 3 MKRKSGILLHITSL--PGSYGIGDFGKGAYEFIDFLAEAGQSYWQILPLGPTGY-----GDSPYQSFSAFAGNPLLIDLE 75 (497)
T ss_pred CCCceEEEeccccC--CCCCCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCC-----CCCCcCcccccccChhhcChh
Confidence 35999999999999 5568999999 999999999999999999999999983 358999999999999999999
Q ss_pred hhcccCCHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHHHhhhc-cccchhHHHHHHHhcccCcchhhchHHHHhh
Q 002052 350 ALSEKMPEDIKKEIEKAKVQLDKKDVDYEATLATKLAIARKVFNQEKD-LILNSSAFQNFFSENEDWLKPYAAFCFLRDF 428 (975)
Q Consensus 350 ~l~~~~~~~~~~~~~~~~~~l~~~~vDY~~v~~~K~~~L~~~f~~~~~-~~~~~~~f~~F~~~~~~wL~~yA~F~aL~~~ 428 (975)
.|++...- ..+++.+.......+.|||++|+++|.++|+++|++|.. ......+|++||+++++||++||+||||+++
T Consensus 76 ~l~~~~~l-~~~~~~~~~~~~~~~~vdy~~v~~~K~~~L~~af~~f~~~~~~~~~~f~~F~~~~~~wL~~yA~F~al~~~ 154 (497)
T PRK14508 76 ALVDDGLL-DESDLEGLPFGSNPERVDYDLVREAKRPLLRKAFERFLRASLERAEAFEAFCEEEAYWLDDYALFMALKEH 154 (497)
T ss_pred hccccccC-CHHHHhhhhhccCccccchHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 99886210 023344322122237899999999999999999999852 2223478999999999999999999999999
Q ss_pred cCCCCCCCCCc-CCCCCHHHHHHHHhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccccCCCchhhcc
Q 002052 429 FDTSDHSQWGR-FSHYSKDKLAKLISEDSLHYDIIRFHYYVQFHLHIQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTWV 507 (975)
Q Consensus 429 ~~~~~w~~Wp~-~~~~~~~~l~~~~~~~~~~~~~i~f~~~lQ~~~~~Ql~~~~~yA~~~gI~L~gDLpigv~~dSaDvW~ 507 (975)
|++.+|++||+ ++.++++++++++ ++++++|+||+|+||+|++||+++++||+++||+|||||||||++||||||+
T Consensus 155 ~~~~~W~~WP~~~~~~~~~~~~~~~---~~~~~~i~f~~~lQ~~~~~Q~~~~~~yA~~~Gi~L~gDLpigV~~dsaDvWa 231 (497)
T PRK14508 155 FGGLPWNEWPEPLRKRDPEALAKAR---EELADEILYHKFLQYLFFRQWKALKAYANDKGIEIIGDLPIYVAYDSADVWA 231 (497)
T ss_pred hCCCCcCCCCHHhhcCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeeecccCCCCHHHHc
Confidence 99999999997 5889999999885 7899999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCc------ccCCCCCCCcCCCCCCCCCCCHHHHHHhhhHHHHHHHHHHhccCCEEEeccccccceeeeecCC
Q 002052 508 YPNLFRMNTS------TGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMSKYFTAYRIDHILGFFRIWELPEH 581 (975)
Q Consensus 508 ~~~lF~~d~~------aGaPPD~Fs~~GQnWG~P~ynw~~l~~~gy~ww~~Rlr~~~~~~d~lRIDH~~Gf~r~W~IP~~ 581 (975)
+|++|++|.+ +|||||+||++|||||+|+|||++|+++||+||++||++++++||++||||||||+|+|+||++
T Consensus 232 ~~~lF~l~~~~~p~~vaGaPPD~Fs~~GQ~WG~P~y~w~~l~~~gy~ww~~rlr~~~~~~~~lRIDH~~Gf~r~W~IP~~ 311 (497)
T PRK14508 232 NPELFKLDEDGKPTVVAGVPPDYFSETGQLWGNPVYNWDALRKDGYRWWIERLRRSFKLYDIVRIDHFRGFEAYWEIPAG 311 (497)
T ss_pred ChhhhcCCCCCCcceeeeCCCCCCCcccCcCCCCCcCHHHHHhcCcHHHHHHHHHHHHhCCeEEecchhhhceeeeecCC
Confidence 9999999988 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccceeecCCcccHHHHHhccccccccccccchhhhhhHHhhCCchHHHHHhhhccccCCcceeccccchHHHHHHH
Q 002052 582 AMTGLIGKFRPSIPLSQEELEREGIWDFDRLTRPYIRLEHLQEKFGSSWTYIAANFLSEFQKGRYEFTEDCNTEKKIAAK 661 (975)
Q Consensus 582 ~~~g~~G~~~p~~p~~~~el~~~G~~~~~r~~~p~i~~~~l~~~fg~~~~~i~~~~l~~~~~g~y~f~~~~~~e~~i~~~ 661 (975)
+.+|..|+|+|+|. ..|| ++
T Consensus 312 ~~~a~~G~~v~~p~---------------------------------------~~l~---------------------~~ 331 (497)
T PRK14508 312 EKTAINGRWVPGPG---------------------------------------KDLF---------------------EA 331 (497)
T ss_pred CCCCCCCeeecCCH---------------------------------------HHHH---------------------HH
Confidence 99999999999851 1111 22
Q ss_pred HhhhhhcccccchhhhHHHHHHHHhhhceeeecCCCCCCcccccccccCCcccCCChhHHHHHHHHhhhhhhhhhhHHHH
Q 002052 662 LKTCAEKSMLLDSEDKTRRDLFDLIQNIVLIRDPEDSKKFYPRFNLEDTSSFMDLDDHSKNVLKRLYYDYYFHRQENLWR 741 (975)
Q Consensus 662 l~~~~~~~~~~~~~~~~~~~L~~l~~~v~li~~~~~~~~~~pr~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~r~~~~w~ 741 (975)
+ .
T Consensus 332 l------------------------~------------------------------------------------------ 333 (497)
T PRK14508 332 V------------------------K------------------------------------------------------ 333 (497)
T ss_pred H------------------------H------------------------------------------------------
Confidence 1 1
Q ss_pred HhhhccccccccCCCccEEeecCCCCCCcHHHHHHHhCCCceEEeeecCCCC-CCCCCCCCCCCCcEEecCCCCchhHHH
Q 002052 742 ENALKTLPALLNSSDMMACGEDLGLIPSCVHPVMEELGLIGLRIQRMPSEPG-LEFGIPSQYNYMTVCAPSCHDCSTLRA 820 (975)
Q Consensus 742 ~~~~~~L~~l~~~t~~lv~gEDLG~vp~~V~~~l~~lgi~g~rV~~f~~~~~-~~f~~p~~y~~~sVa~tsTHD~~Tlrg 820 (975)
.+ +++|+|||||||+||++|+++|+++||+||||++|+++.+ .+++.|++|+++||||||||||+||+|
T Consensus 334 -~e---------~~~~~vigEDLG~vp~~V~~~l~~~gi~g~~Vl~f~~~~~~~~~~~p~~~~~~~v~~~~THD~~Tl~g 403 (497)
T PRK14508 334 -EE---------LGDLPIIAEDLGVITPDVEELRDRFGFPGMKILQFAFDGDSDNPYLPHNYPRNSVVYTGTHDNDTTVG 403 (497)
T ss_pred -HH---------hCCCCEEEeECCCCCHHHHHHHHHcCCCccEEEEecCCCCCCCCCCCcCCCCCeEEECCCCCCHHHHH
Confidence 00 1368899999999999999999999999999999999853 357789999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHcCCCceeccchhhhhcCccccCCCCCCccccCCCCCCCCC
Q 002052 821 WWEEDEERRRRFFKNVVGSDALPPSQCLPDITHFILRQHVESPSMWAIFPLQDLLALKEDYTTRPATEETINDPTNPRHY 900 (975)
Q Consensus 821 WW~~~~~~~~~~~~~~l~~~g~~p~~~~~~~~~~ii~~~~~S~s~l~i~plQD~L~l~~~~~~~~~~~eriN~Pg~~~~n 900 (975)
||++.+.+.++++.++|+..+ +++++++|++.+++|+|++||+||||+|++++++ |||+|||+++|
T Consensus 404 Ww~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~S~s~l~i~~lqDllgl~~~~--------r~N~PGt~~~n 469 (497)
T PRK14508 404 WWESLDPEERKRVADYLGRSS------EEEIHWALIRLALASVADLAILPMQDLLGLGSEA--------RMNTPGTVGGN 469 (497)
T ss_pred HHhCCCHHHHHHHHHHhccCC------chhHHHHHHHHHhcCCchheeeeHHHHhCCCCcC--------CCcCCCCCCCC
Confidence 999988888888889998531 2679999999999999999999999999999888 99999999999
Q ss_pred cccccCCChhhhhCCHHHHHHHHHHHHHhCCC
Q 002052 901 WRYRVHVTLESLQKDKELKTTVKDLVCASGRS 932 (975)
Q Consensus 901 W~~Rl~~~le~L~~~~~~~~~i~~l~~~~gR~ 932 (975)
|+|||+.++++ .+..++|++|++.+||.
T Consensus 470 W~~Rl~~~~~~----~~~~~~l~~l~~~~~R~ 497 (497)
T PRK14508 470 WSWRLLPDDLT----DDLADRLRELTELYGRA 497 (497)
T ss_pred CCccCCccccC----HHHHHHHHHHHHHhCcC
Confidence 99999987655 46789999999999994
No 4
>PLN02635 disproportionating enzyme
Probab=100.00 E-value=4.2e-128 Score=1122.23 Aligned_cols=488 Identities=25% Similarity=0.464 Sum_probs=431.4
Q ss_pred CCcceEEeeecCccCCCCCCcccCHHH-HHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCcCCccccCccccChh
Q 002052 271 PWRGAGVAVPMFSVRSEADLGVGEFLD-LKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQ 349 (975)
Q Consensus 271 ~~R~~Gv~~~l~SLrs~~~~GiGdf~d-l~~~~d~~~~~G~~~~QilPl~~t~~~~~~~~~SPYs~~S~falNPlyI~l~ 349 (975)
..|++||++|||||||+ |||||||+ +++|||||+++|+++|||||||||++..+ .++|||+|+|+||+||+|||++
T Consensus 26 ~~R~~Gvll~l~SLps~--~GIGDfg~~a~~fvd~la~~G~~~wQilPL~pt~~~~~-~~~SPYs~~S~fa~NPlyI~le 102 (538)
T PLN02635 26 ARRRAGILLHPTSLPGP--YGIGDLGDEAFRFLDWLASTGCSVWQVLPLVPPGRKGG-EDGSPYSGQDANCGNTLLISLE 102 (538)
T ss_pred CCcceEEEEccccCCCC--CCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCC-CCCCCcccccccccChhhcCHH
Confidence 35999999999999986 89999998 77999999999999999999999986433 3679999999999999999999
Q ss_pred hhcccCCHHH-HHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHhc--ccCcchhhchHHH
Q 002052 350 ALSEKMPEDI-KKEIEKAKVQLDKKDVDYEATLATKLAIARKVFNQEKDLI-LNSSAFQNFFSEN--EDWLKPYAAFCFL 425 (975)
Q Consensus 350 ~l~~~~~~~~-~~~~~~~~~~l~~~~vDY~~v~~~K~~~L~~~f~~~~~~~-~~~~~f~~F~~~~--~~wL~~yA~F~aL 425 (975)
.|++.. .+ .+++... +..+.|||++|+.+|.++|+++|++|.... ....+|++||+++ +.||++||+||||
T Consensus 103 ~L~e~g--~l~~~~l~~~---~~~~~VDY~~v~~~K~~~L~~a~~~f~~~~~~~~~~F~~F~~~~g~~~WL~dyAlF~aL 177 (538)
T PLN02635 103 ELVKDG--LLEEDELPEP---VPVGKVDFSAVAELKDPLIAKAAERLLLSDGELKEELEDFRKDPEISSWLEDAALFAAI 177 (538)
T ss_pred hhhccc--ccChhhHhhh---cCCCcccHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 998851 11 1223222 234789999999999999999999874321 2346899999999 7999999999999
Q ss_pred HhhcCCCCCCCCCc-CCCCCHHHHHHHHhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccccCCCchh
Q 002052 426 RDFFDTSDHSQWGR-FSHYSKDKLAKLISEDSLHYDIIRFHYYVQFHLHIQLSEAAEYARKKGVVLKGDLPIGVDRNSVD 504 (975)
Q Consensus 426 ~~~~~~~~w~~Wp~-~~~~~~~~l~~~~~~~~~~~~~i~f~~~lQ~~~~~Ql~~~~~yA~~~gI~L~gDLpigv~~dSaD 504 (975)
+++|++.+|++||+ ++.++++++++++ ++++++|+||+|+||+|++||+++++||+++||.|||||||||++||||
T Consensus 178 k~~~~~~~W~~WPe~~~~~~~~al~~~~---~~~~~~i~f~~~lQ~~~~~Qw~~l~~yA~~~Gi~L~gDlpi~Va~dSaD 254 (538)
T PLN02635 178 DNTLNAKAWWDWPEPLRDRHPAALEAIR---QSHKDFIDEFIAQQFLFQRQWQAVRSYANEKGISIIGDMPIYVGGHSAD 254 (538)
T ss_pred HHHhCCCCcccCCHhhccCCHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeecccCCCcHH
Confidence 99999999999997 4899999999985 7899999999999999999999999999999999999999999999999
Q ss_pred hccCcccccccC------cccCCCCCCCcCCCCCCCCCCCHHHHHHhhhHHHHHHHHHHhccCCEEEeccccccceeeee
Q 002052 505 TWVYPNLFRMNT------STGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMSKYFTAYRIDHILGFFRIWEL 578 (975)
Q Consensus 505 vW~~~~lF~~d~------~aGaPPD~Fs~~GQnWG~P~ynw~~l~~~gy~ww~~Rlr~~~~~~d~lRIDH~~Gf~r~W~I 578 (975)
||++|++|++|. ++|||||+||++|||||||+|||++|+++||+||++|||+++++||++||||||||+|+|+|
T Consensus 255 vWa~~~lF~ld~~g~p~~~aGaPPD~Fs~~GQ~WG~P~y~w~~l~~~gy~ww~~Rlr~~~~~~d~lRIDHf~Gf~r~W~I 334 (538)
T PLN02635 255 VWANRKLFLLNKTGFPLLVSGVPPDAFSETGQLWGSPLYDWKAMAKDGYSWWAGRMRRALELYDEFRIDHFRGFAGYWAV 334 (538)
T ss_pred HhcCHHhhcCCCCCCcceeeeCCCCcCCcccccCCCcCcCHHHHHhcCcHHHHHHHHHHHHhCCeEEecchhhhheeeec
Confidence 999999999996 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccceeecCCcccHHHHHhccccccccccccchhhhhhHHhhCCchHHHHHhhhccccCCcceeccccchHHHH
Q 002052 579 PEHAMTGLIGKFRPSIPLSQEELEREGIWDFDRLTRPYIRLEHLQEKFGSSWTYIAANFLSEFQKGRYEFTEDCNTEKKI 658 (975)
Q Consensus 579 P~~~~~g~~G~~~p~~p~~~~el~~~G~~~~~r~~~p~i~~~~l~~~fg~~~~~i~~~~l~~~~~g~y~f~~~~~~e~~i 658 (975)
|+++.|+..|.|+++| | ..||
T Consensus 335 P~g~~ta~~G~wv~~P----------g-----------------------------~~l~-------------------- 355 (538)
T PLN02635 335 PADAKTAMNGRWKVGP----------G-----------------------------KSFF-------------------- 355 (538)
T ss_pred cCCCCCCCCCeeeeCC----------H-----------------------------HHHH--------------------
Confidence 9999999999999985 1 1111
Q ss_pred HHHHhhhhhcccccchhhhHHHHHHHHhhhceeeecCCCCCCcccccccccCCcccCCChhHHHHHHHHhhhhhhhhhhH
Q 002052 659 AAKLKTCAEKSMLLDSEDKTRRDLFDLIQNIVLIRDPEDSKKFYPRFNLEDTSSFMDLDDHSKNVLKRLYYDYYFHRQEN 738 (975)
Q Consensus 659 ~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~v~li~~~~~~~~~~pr~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~r~~~ 738 (975)
.++ .
T Consensus 356 -~~l------------------------~--------------------------------------------------- 359 (538)
T PLN02635 356 -DAI------------------------K--------------------------------------------------- 359 (538)
T ss_pred -HHH------------------------H---------------------------------------------------
Confidence 221 0
Q ss_pred HHHHhhhccccccccCCCccEEeecCCCCCCcHHHHHHHhCCCceEEeeecCCCC-CCCCCCCCCCCCcEEecCCCCchh
Q 002052 739 LWRENALKTLPALLNSSDMMACGEDLGLIPSCVHPVMEELGLIGLRIQRMPSEPG-LEFGIPSQYNYMTVCAPSCHDCST 817 (975)
Q Consensus 739 ~w~~~~~~~L~~l~~~t~~lv~gEDLG~vp~~V~~~l~~lgi~g~rV~~f~~~~~-~~f~~p~~y~~~sVa~tsTHD~~T 817 (975)
+.++ +|.|||||||+||++|+++|+++||+||||++|+++.+ .+++.|++|+.+||||||||||+|
T Consensus 360 ----~~~~---------~~~vIaEDLG~I~~~V~~l~~~~g~pGmkVl~F~f~~~~~~~~~P~~y~~~~v~ytgTHD~~T 426 (538)
T PLN02635 360 ----KAVG---------KIDIIAEDLGVITEDVVELRKAIGAPGMAVLQFAFGGDADNPHLPHNHEENQVVYPGTHDNDT 426 (538)
T ss_pred ----HHcC---------CCCEEEeeCCCCCHHHHHHHHHcCCCCCEEEEeeecCCCCCCCCcccccccceeeecCCCccc
Confidence 1122 56799999999999999999999999999999999854 369999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHcCCCceeccchhhhhcCccccCCCCCCccccCCCCCC
Q 002052 818 LRAWWEEDEERRRRFFKNVVGSDALPPSQCLPDITHFILRQHVESPSMWAIFPLQDLLALKEDYTTRPATEETINDPTNP 897 (975)
Q Consensus 818 lrgWW~~~~~~~~~~~~~~l~~~g~~p~~~~~~~~~~ii~~~~~S~s~l~i~plQD~L~l~~~~~~~~~~~eriN~Pg~~ 897 (975)
++|||++.+.+.++.+.+||+... ..++++++|+.+++|+|.+||+||||+|+|++++ |||+|||.
T Consensus 427 l~GW~~~~d~~~r~~~~~yl~~~~------~~~~~~~li~~a~~s~a~~~i~p~QD~Lgl~~~a--------RmN~Pgt~ 492 (538)
T PLN02635 427 VVGWWDKLDEEEKSKVRKYLGIAD------EDDIAWELIRAALSSVARTAVIPMQDVLGLDNSA--------RMNTPATQ 492 (538)
T ss_pred HHHHHhcCCHHHHHHHHHHhCCCC------ccchhHHHHHHHHHhHHHHHHhhHHHHhCCCccc--------cCcCCCCC
Confidence 999999888877878889998531 2569999999999999999999999999999988 99999999
Q ss_pred CCCcccccCCChhhhhCC-HHHHHHHHHHHHHhCCCC
Q 002052 898 RHYWRYRVHVTLESLQKD-KELKTTVKDLVCASGRSC 933 (975)
Q Consensus 898 ~~nW~~Rl~~~le~L~~~-~~~~~~i~~l~~~~gR~~ 933 (975)
++||+|||+.+ .++.. .++.++|++|++.|||.+
T Consensus 493 ~~NW~wR~~~~--~~~~~~~~~~~~l~~l~~~~~R~~ 527 (538)
T PLN02635 493 AGNWAWRIGSS--GIFDSLEPEAEKLRELLHLYNRLP 527 (538)
T ss_pred CCCeeeecCcc--ccccccHHHHHHHHHHHHHHCCCC
Confidence 99999999853 32322 568899999999999943
No 5
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=100.00 E-value=5e-127 Score=1121.18 Aligned_cols=490 Identities=39% Similarity=0.690 Sum_probs=371.1
Q ss_pred eecCccCCCCCCcccCHH-HHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCcCCccccCccccChhhhcccCCH
Q 002052 279 VPMFSVRSEADLGVGEFL-DLKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQALSEKMPE 357 (975)
Q Consensus 279 ~~l~SLrs~~~~GiGdf~-dl~~~~d~~~~~G~~~~QilPl~~t~~~~~~~~~SPYs~~S~falNPlyI~l~~l~~~~~~ 357 (975)
||||||||++|||||||| +|++|||||+++|+++||||||+||++. ++|||+|+|+||+||+|||++.|++....
T Consensus 1 ~~l~SLrs~~~~GIGDfg~dl~~~~d~~~~~G~~i~qllpl~pt~~~----~~sPY~p~S~~alNPlyI~l~~l~e~~~~ 76 (496)
T PF02446_consen 1 VPLYSLRSPRSWGIGDFGDDLYQFIDWAAEAGQSIWQLLPLNPTGPG----NSSPYSPSSRFALNPLYIDLEALPEFGLL 76 (496)
T ss_dssp --GGGS-SSS--SS--SSHHHHHHHHHHHHCT--EEE----S-B-TT----CTTTTSBS-SSS--GGGS-SHHHHHTTSS
T ss_pred CCCCcCCCCCCCceecHHHHHHHHHHHHHHcCCCeeccccccCCCCC----CCCCCCCCCCCcCChHHcCHHHhhhcccc
Confidence 699999999999999995 8999999999999999999999999865 45799999999999999999999886311
Q ss_pred HHHHHHHHhhcccC-CCCCCHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHhcccCcchhhchHHHHhhcCCCCCCC
Q 002052 358 DIKKEIEKAKVQLD-KKDVDYEATLATKLAIARKVFNQEKDLILNSSAFQNFFSENEDWLKPYAAFCFLRDFFDTSDHSQ 436 (975)
Q Consensus 358 ~~~~~~~~~~~~l~-~~~vDY~~v~~~K~~~L~~~f~~~~~~~~~~~~f~~F~~~~~~wL~~yA~F~aL~~~~~~~~w~~ 436 (975)
...+.++.. ..++ .+.|||++|+++|.++|+++|++|........+|++||++++.||++||+||||++++++.+|.+
T Consensus 77 ~~~~~~~~~-~~~~~~~~VDY~~v~~~K~~~L~~af~~f~~~~~~~~~f~~F~~~~~~wL~~yA~f~al~~~~~~~~w~~ 155 (496)
T PF02446_consen 77 DEAEEIEEL-AELRDADRVDYEAVAALKRRALRKAFERFKEQAERREEFEAFCEQNGEWLEDYALFCALKEKFGGAPWRE 155 (496)
T ss_dssp -----GGGS--S---SSB--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSGGG
T ss_pred chhhhhhhc-ccccccccccHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhcchhHhHHHHHHHHHHhCCCCccc
Confidence 111112222 2222 38999999999999999999999977543457999999999999999999999999999999999
Q ss_pred CC-c-CCCCCHHHHHHHHhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccccCCCchhhccCcccccc
Q 002052 437 WG-R-FSHYSKDKLAKLISEDSLHYDIIRFHYYVQFHLHIQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTWVYPNLFRM 514 (975)
Q Consensus 437 Wp-~-~~~~~~~~l~~~~~~~~~~~~~i~f~~~lQ~~~~~Ql~~~~~yA~~~gI~L~gDLpigv~~dSaDvW~~~~lF~~ 514 (975)
|| + ++.++++++.++. ++++++|+||+|+||+|++||+++++||+++||+|||||||||++||||||++|++|++
T Consensus 156 WP~~~~~~~~~~~l~~~~---~~~~~~i~f~~~lQ~~~~~Q~~~~~~~A~~~gI~L~gDlpigv~~dsaDvW~~~~lF~~ 232 (496)
T PF02446_consen 156 WPEEELRDRDSEALAAFR---EEHADEIEFHKFLQWLAFKQWKAAKEYAREMGIGLIGDLPIGVSPDSADVWANPELFLL 232 (496)
T ss_dssp S--HHHHTT-HHHHHHHH---HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEESS--SSSHHHHH-GGGB-B
T ss_pred CCHHHHhhhcHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeccceECCCcHHHHhCHHHHhC
Confidence 98 4 5889999998885 77999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCCCCcCCCCCCCCCCCHHHHHHhhhHHHHHHHHHHhccCCEEEeccccccceeeeecCCCcccccceeecCC
Q 002052 515 NTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMSKYFTAYRIDHILGFFRIWELPEHAMTGLIGKFRPSI 594 (975)
Q Consensus 515 d~~aGaPPD~Fs~~GQnWG~P~ynw~~l~~~gy~ww~~Rlr~~~~~~d~lRIDH~~Gf~r~W~IP~~~~~g~~G~~~p~~ 594 (975)
+.++|||||+||++|||||+|+|||++|+++||+||++||++++++||++||||||||+|+|+||+++.++..|.|+++|
T Consensus 233 ~~~aGaPPD~fs~~GQ~WG~P~y~w~~l~~~gy~ww~~rl~~~~~~~d~lRIDH~~Gf~r~W~IP~~~~~a~~G~~~~~p 312 (496)
T PF02446_consen 233 DASAGAPPDYFSPTGQNWGNPPYNWDALKEDGYRWWIDRLRANMRLFDALRIDHFRGFFRYWWIPAGGETAIDGAWVRYP 312 (496)
T ss_dssp -EEEEE-SSSSSSS-EEEEEE-B-HHHHHHTTTHHHHHHHHHHHCC-SEEEEETGGGGTEEEEEETT-SSSTT-EEEE--
T ss_pred cCeeCCCCCCCCcccccCCCCCcCHHHHHHcCCHHHHHHHHHHHHhCCchHHHHHHHHHheeEecCCCCCCCCceeecch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred cccHHHHHhccccccccccccchhhhhhHHhhCCchHHHHHhhhccccCCcceeccccchHHHHHHHHhhhhhcccccch
Q 002052 595 PLSQEELEREGIWDFDRLTRPYIRLEHLQEKFGSSWTYIAANFLSEFQKGRYEFTEDCNTEKKIAAKLKTCAEKSMLLDS 674 (975)
Q Consensus 595 p~~~~el~~~G~~~~~r~~~p~i~~~~l~~~fg~~~~~i~~~~l~~~~~g~y~f~~~~~~e~~i~~~l~~~~~~~~~~~~ 674 (975)
. .. ++++|
T Consensus 313 ~---------------------------------------~~---------------------ll~~l------------ 320 (496)
T PF02446_consen 313 G---------------------------------------ED---------------------LLAIL------------ 320 (496)
T ss_dssp H---------------------------------------HH---------------------HHHHH------------
T ss_pred H---------------------------------------HH---------------------HHHHH------------
Confidence 1 11 11332
Q ss_pred hhhHHHHHHHHhhhceeeecCCCCCCcccccccccCCcccCCChhHHHHHHHHhhhhhhhhhhHHHHHhhhccccccccC
Q 002052 675 EDKTRRDLFDLIQNIVLIRDPEDSKKFYPRFNLEDTSSFMDLDDHSKNVLKRLYYDYYFHRQENLWRENALKTLPALLNS 754 (975)
Q Consensus 675 ~~~~~~~L~~l~~~v~li~~~~~~~~~~pr~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~r~~~~w~~~~~~~L~~l~~~ 754 (975)
. .+.++
T Consensus 321 ------------~-------------------------------------------------------~e~~r------- 326 (496)
T PF02446_consen 321 ------------A-------------------------------------------------------LESGR------- 326 (496)
T ss_dssp ------------H-------------------------------------------------------HHHS--------
T ss_pred ------------H-------------------------------------------------------HHcCC-------
Confidence 1 00110
Q ss_pred CCccEEeecCCCCCCcHHHHHHHhCCCceEEeeecCC-CCCCCCCCCCCCCCcEEecCCCCchhHHHHHhcCHHHHHHHH
Q 002052 755 SDMMACGEDLGLIPSCVHPVMEELGLIGLRIQRMPSE-PGLEFGIPSQYNYMTVCAPSCHDCSTLRAWWEEDEERRRRFF 833 (975)
Q Consensus 755 t~~lv~gEDLG~vp~~V~~~l~~lgi~g~rV~~f~~~-~~~~f~~p~~y~~~sVa~tsTHD~~TlrgWW~~~~~~~~~~~ 833 (975)
+|+|||||||+||++|+++|+++||+||||++|+++ .+++|+.|++|+++||||||||||+||+|||++.++++++++
T Consensus 327 -~~~vigEDLG~vp~~v~~~l~~~gi~g~~Vl~f~~~~~~~~~~~P~~~~~~sva~~~THD~~Tl~gww~~~~~~~~~~~ 405 (496)
T PF02446_consen 327 -DCLVIGEDLGTVPPEVRELLAELGIPGMRVLQFEFDEDDGNFYLPHNYPENSVAYTGTHDNPTLRGWWEGEDEEERRYL 405 (496)
T ss_dssp -S-EEEE--TSS--HHHHHHHHHTT--EEEEGGGSSSSSTT-TTSGGGSTSSEEEESS-TTS--HHHHHHCS-HHHHHHH
T ss_pred -CCcEEEeecCCCcHHHHHHHHHcCCCceEEEEecCCCCCCCCCCcccCCCccEeeCCCCCCHHHHHHHhCCCHHHHHHH
Confidence 588999999999999999999999999999999995 456899999999999999999999999999999988888889
Q ss_pred HHHhcCCCCCCCCCchHHHHHHHHHHHcCCCceeccchhhhhcCccccCCCCCCccccCCCCCCCCCcccccCCChhhhh
Q 002052 834 KNVVGSDALPPSQCLPDITHFILRQHVESPSMWAIFPLQDLLALKEDYTTRPATEETINDPTNPRHYWRYRVHVTLESLQ 913 (975)
Q Consensus 834 ~~~l~~~g~~p~~~~~~~~~~ii~~~~~S~s~l~i~plQD~L~l~~~~~~~~~~~eriN~Pg~~~~nW~~Rl~~~le~L~ 913 (975)
.++|+.. ..+...++++++++|+.++.|+|++||+||||+|+|+++. ...++++|||+|||.++||+||||.++|++.
T Consensus 406 ~~~l~~~-~~~~~~~~~~~~~~~~~~~~s~s~~~i~~~qDlL~l~~e~-~~~~~~~r~N~PGt~~~NW~~Rl~~~l~~~~ 483 (496)
T PF02446_consen 406 ARYLGRL-SAPETDEDEIAEALIRQALSSPSRLAIIPLQDLLGLGDEL-DLLPEEERINIPGTVDENWRWRLPESLEELF 483 (496)
T ss_dssp HHHHCHT-T-SSSSGGGHHHHHHHHHHHSS-SEEEEEHHHHTT--GG--------G-S--TT-SSSTS-B---TTGCSGH
T ss_pred HHHhcCc-cccCCCCcchhHHHHHHHHHhHHHHHHHHHHHHHcCChhh-ccccCCCCCcCCCCCCCcCCeeCCCCHHHhH
Confidence 9999854 4556678899999999999999999999999999999986 6788899999999999999999999999998
Q ss_pred CCHHHHHHHHHH
Q 002052 914 KDKELKTTVKDL 925 (975)
Q Consensus 914 ~~~~~~~~i~~l 925 (975)
+++++++.|++|
T Consensus 484 ~~~~~~~~l~~i 495 (496)
T PF02446_consen 484 EDAEFIALLTEI 495 (496)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHhhccc
Confidence 777777776654
No 6
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=100.00 E-value=6.2e-124 Score=1118.91 Aligned_cols=543 Identities=23% Similarity=0.363 Sum_probs=459.1
Q ss_pred EeccCCCCceeeeEEEECCCCCeeEeeCCCeeEEecCCCCCCceEeeccccccCCCCcceEEeeecCccCCCCCCcccCH
Q 002052 216 CVIQRGDFPIKYKYCKSGKTGNISLETGANRNLNVDFSNNQPRYIFLSDGMMREMPWRGAGVAVPMFSVRSEADLGVGEF 295 (975)
Q Consensus 216 v~l~~~~~~~eYKyvi~~~~g~v~WE~G~NR~~~~p~~~~~p~~~~~~~~~~~~~~~R~~Gv~~~l~SLrs~~~~GiGdf 295 (975)
+.+|+ +++++|+-+....++.. ..-+++.+|..|..|.- .. ...|.|||++|||||||+++||||||
T Consensus 98 ~~lp~-~lp~Gyh~L~~~~~~~~----~~~~livaP~~~~~p~~------~~--~~~r~wGv~~qlySLrs~~~~GIGDf 164 (695)
T PRK11052 98 LTLPA-DLPLGYHTLTLTQDDQR----WHCRIIVAPKRCYEPQA------LL--QGKKLWGACVQLYTLRSEHNWGIGDF 164 (695)
T ss_pred ccCCC-CCCCeeEEEEEEcCCce----EEEEEEEeCCccCCchh------hc--cCCCceEEEeccccCCCCCCCCeecH
Confidence 46776 78999999998854331 23457778888875531 11 12478999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCcCCccccCccccChhhhcccCC-HHHH-----HHHHHhhcc
Q 002052 296 LDLKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQALSEKMP-EDIK-----KEIEKAKVQ 369 (975)
Q Consensus 296 ~dl~~~~d~~~~~G~~~~QilPl~~t~~~~~~~~~SPYs~~S~falNPlyI~l~~l~~~~~-~~~~-----~~~~~~~~~ 369 (975)
+||++||||++++|+++|||||||++++..+ .++|||||+|+||+||+|||++.|++... ..+. .++.+....
T Consensus 165 gdl~~l~d~~a~~G~~~~qlnPlha~~p~~p-~~~SPYsp~Sr~alNPlyI~~e~l~e~~~~~~~~~~~~~~~~~~~~~~ 243 (695)
T PRK11052 165 GDLKQMLEDVAKRGGDFIGLNPIHALYPANP-ESASPYSPSSRRWLNVIYIDVNAVEDFQQSEEAQAWWQSAETQQRLQQ 243 (695)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcCCCCCC-CCCCCcccccccccChHHcCHHHHhhhhhhhhhhhhhcchhHHHHHhh
Confidence 9999999999999999999999999876554 35799999999999999999999988532 1111 122222222
Q ss_pred cCC-CCCCHHHHHHHHHHHHHHHHHhhhcc---ccchhHHHHHHHhcccCcchhhchHHHHhhcCCC-----CCCCCCc-
Q 002052 370 LDK-KDVDYEATLATKLAIARKVFNQEKDL---ILNSSAFQNFFSENEDWLKPYAAFCFLRDFFDTS-----DHSQWGR- 439 (975)
Q Consensus 370 l~~-~~vDY~~v~~~K~~~L~~~f~~~~~~---~~~~~~f~~F~~~~~~wL~~yA~F~aL~~~~~~~-----~w~~Wp~- 439 (975)
++. +.|||++|+++|.++|+++|++|... .....+|++||++++.||++||+||||+++|++. +|.+||+
T Consensus 244 ~~~~~~VDy~~v~~~K~~~L~~af~~f~~~~~~~~~~~~f~~F~~~~g~wL~~yA~F~AL~~~~~~~~~~~~~W~~WP~~ 323 (695)
T PRK11052 244 ARAAEWVDYSTVTALKLTALRLAFKQFAQRDKDDEQMQAFRQFVAEGGESLLWQAAFDALHAHLVKEDEMRWGWPVWPEE 323 (695)
T ss_pred hccCCcccHHHHHHHHHHHHHHHHHHHhhccCcchhHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCCCCCCCccCCCHh
Confidence 333 68999999999999999999998542 1234689999999999999999999999999865 7999996
Q ss_pred CCCCCHHHHHHHHhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHcCC--eeeeccccccCCCchhhccCcccccccCc
Q 002052 440 FSHYSKDKLAKLISEDSLHYDIIRFHYYVQFHLHIQLSEAAEYARKKGV--VLKGDLPIGVDRNSVDTWVYPNLFRMNTS 517 (975)
Q Consensus 440 ~~~~~~~~l~~~~~~~~~~~~~i~f~~~lQ~~~~~Ql~~~~~yA~~~gI--~L~gDLpigv~~dSaDvW~~~~lF~~d~~ 517 (975)
+++++++++++++ ++++++|+||+|+||+|++||+++++||+++|| +|||||||||++||||||++|++|+++.+
T Consensus 324 ~~~~~~~a~~~~~---~~~~~~v~f~~~lQ~~~~~Ql~~~~~~A~~~Gm~igL~gDLpvgv~~dsaDvWa~~~~F~l~~~ 400 (695)
T PRK11052 324 YQDVDSPAVQQFC---EEHADEVDFYLWLQWLADSQFAACWQLSQQLGMPIGLYRDLAVGVAEGGAETWCDRELYCLKAS 400 (695)
T ss_pred hccCCHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEEeeeceECCCcHHHhCCHHHhcCCCc
Confidence 5899999999985 788999999999999999999999999999998 89999999999999999999999999999
Q ss_pred ccCCCCCCCcCCCCCCCCCCCHHHHHHhhhHHHHHHHHHHhccCCEEEeccccccceeeeecCCCcccccceeecCCccc
Q 002052 518 TGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMSKYFTAYRIDHILGFFRIWELPEHAMTGLIGKFRPSIPLS 597 (975)
Q Consensus 518 aGaPPD~Fs~~GQnWG~P~ynw~~l~~~gy~ww~~Rlr~~~~~~d~lRIDH~~Gf~r~W~IP~~~~~g~~G~~~p~~p~~ 597 (975)
+|||||+||++|||||+|+|||++|+++||+||++|||++|++||++||||||||+|+|+||+++ ++..|.|+.+|.
T Consensus 401 ~GaPPD~fs~~GQ~WG~P~y~w~~l~~~gy~ww~~rlr~~~~~~g~lRIDH~~Gl~rlW~IP~g~-~a~~G~yv~~P~-- 477 (695)
T PRK11052 401 VGAPPDILGPLGQNWGLPPMDPHVLQARAYQPFIDLLRANMQHCGALRIDHVMSLLRLWWIPYGE-TADQGAYVHYPV-- 477 (695)
T ss_pred CCCCCCcCCcccccCCCcCcCHHHHHhcCcHHHHHHHHHHHHhCCEEEecchhhhheeeecCCCC-CCCCCeeEeCCH--
Confidence 99999999999999999999999999999999999999999999999999999999999999998 888888887641
Q ss_pred HHHHHhccccccccccccchhhhhhHHhhCCchHHHHHhhhccccCCcceeccccchHHHHHHHHhhhhhcccccchhhh
Q 002052 598 QEELEREGIWDFDRLTRPYIRLEHLQEKFGSSWTYIAANFLSEFQKGRYEFTEDCNTEKKIAAKLKTCAEKSMLLDSEDK 677 (975)
Q Consensus 598 ~~el~~~G~~~~~r~~~p~i~~~~l~~~fg~~~~~i~~~~l~~~~~g~y~f~~~~~~e~~i~~~l~~~~~~~~~~~~~~~ 677 (975)
++++ +++++ +
T Consensus 478 ---------------------------------------------------------~~ll-~~lal--e---------- 487 (695)
T PRK11052 478 ---------------------------------------------------------DDLL-AILAL--E---------- 487 (695)
T ss_pred ---------------------------------------------------------HHHH-HHHHH--H----------
Confidence 1111 32210 0
Q ss_pred HHHHHHHHhhhceeeecCCCCCCcccccccccCCcccCCChhHHHHHHHHhhhhhhhhhhHHHHHhhhccccccccCCCc
Q 002052 678 TRRDLFDLIQNIVLIRDPEDSKKFYPRFNLEDTSSFMDLDDHSKNVLKRLYYDYYFHRQENLWRENALKTLPALLNSSDM 757 (975)
Q Consensus 678 ~~~~L~~l~~~v~li~~~~~~~~~~pr~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~r~~~~w~~~~~~~L~~l~~~t~~ 757 (975)
+. ..+|
T Consensus 488 -----------------------------------------------------------------s~---------~~~~ 493 (695)
T PRK11052 488 -----------------------------------------------------------------SQ---------RHRC 493 (695)
T ss_pred -----------------------------------------------------------------Hh---------cCCC
Confidence 01 1368
Q ss_pred cEEeecCCCCCCcHHHHHHHhCCCceEEeeecCCCCCCCCCCCCCCCCcEEecCCCCchhHHHHHhcCHHH---------
Q 002052 758 MACGEDLGLIPSCVHPVMEELGLIGLRIQRMPSEPGLEFGIPSQYNYMTVCAPSCHDCSTLRAWWEEDEER--------- 828 (975)
Q Consensus 758 lv~gEDLG~vp~~V~~~l~~lgi~g~rV~~f~~~~~~~f~~p~~y~~~sVa~tsTHD~~TlrgWW~~~~~~--------- 828 (975)
+|||||||+||++|+++|+++||+||||++|+++.+++|+.|++|+++||||||||||+|++|||++.+.+
T Consensus 494 ~vIgEDLG~Vp~~Vr~~l~~~gi~g~~Vl~Fe~~~~~~~~~P~~y~~~sva~t~THD~pTl~Gww~~~di~lr~~lgl~~ 573 (695)
T PRK11052 494 MVIGEDLGTVPVEIVGKLRDSGVYSYKVLYFENDEEGGFRAPAAYPEQSMATLTTHDLPTLRGYWQCDDLTLGKELGLYP 573 (695)
T ss_pred CEEEeeCCCCCHHHHHHHHHcCCCCcEEEEecccCCCCCCCcccCcCCeEEECCCCCChhHHHHHhcCchHHHHHcCCCC
Confidence 89999999999999999999999999999999986678999999999999999999999999999865411
Q ss_pred ----H----------HHHHHHHhcCCCCCCC---------CCchHHHHHHHHHHHcCCCceeccchhhhhcCccccCCCC
Q 002052 829 ----R----------RRFFKNVVGSDALPPS---------QCLPDITHFILRQHVESPSMWAIFPLQDLLALKEDYTTRP 885 (975)
Q Consensus 829 ----~----------~~~~~~~l~~~g~~p~---------~~~~~~~~~ii~~~~~S~s~l~i~plQD~L~l~~~~~~~~ 885 (975)
. +.-+...|...|..|. .++++++.++++++++|||.|+++||||+|++.+
T Consensus 574 ~~~~~~~~~~~r~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~l~~a~~~~la~tpS~L~~~~leD~lg~~~------ 647 (695)
T PRK11052 574 DEEVLRGLYQDRERAKQGLLDALHKHGCLPKRAGHKASLMSMTPTLNRGLQRYVADSNSALLGLQPEDWLDMAK------ 647 (695)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHcCCCCcccccccccccCCHHHHHHHHHHHhcCCchhhhcCHHHHhcCcc------
Confidence 0 1112345555554443 2467889999999999999999999999999864
Q ss_pred CCccccCCCCCCCC--CcccccCCChhhhhCCHHHHHHHHHHHHHhCCC
Q 002052 886 ATEETINDPTNPRH--YWRYRVHVTLESLQKDKELKTTVKDLVCASGRS 932 (975)
Q Consensus 886 ~~~eriN~Pg~~~~--nW~~Rl~~~le~L~~~~~~~~~i~~l~~~~gR~ 932 (975)
++|+|||+.+ |||+|||.++|+|.++++++..++.|.+.++|.
T Consensus 648 ----~~N~PGT~~eyPNWrrrl~~~le~l~~~~~~~~~~~~l~~~r~~~ 692 (695)
T PRK11052 648 ----PVNIPGTSDEYPNWRRKLSATLEEIFADEGVNRLLKDLDKRRKAA 692 (695)
T ss_pred ----CCCCCCCCCCCCCccccCCcCHHHHhcCHHHHHHHHHHHHHhhhh
Confidence 8999999965 999999999999999999999999998876654
No 7
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=100.00 E-value=8e-121 Score=1064.47 Aligned_cols=483 Identities=27% Similarity=0.468 Sum_probs=420.2
Q ss_pred CcceEEeeecCccCCCCCCcccCHHHH-HHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCcCCccccCccccChhh
Q 002052 272 WRGAGVAVPMFSVRSEADLGVGEFLDL-KLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQA 350 (975)
Q Consensus 272 ~R~~Gv~~~l~SLrs~~~~GiGdf~dl-~~~~d~~~~~G~~~~QilPl~~t~~~~~~~~~SPYs~~S~falNPlyI~l~~ 350 (975)
.|.|||++|||||||+ |||||||++ +.|+||++++|+++||||||+++++. ++|||||+|+||+||+|||++.
T Consensus 13 ~R~~Gvll~l~SL~s~--~GIGDfg~la~~~~d~~~~~g~~~wqllpl~p~~~~----~ssPYs~~S~~a~NplyI~le~ 86 (513)
T TIGR00217 13 KRKSGILLQLYSLPSE--WGIGDLGDGAYKFIDFLKAGSQSVWQIHALYPADFT----RSPPYSISSARALNVYYIDLEA 86 (513)
T ss_pred CCceEEEeccccCCCC--CCccChHHHHHHHHHHHHHcCCcEEEeCCCCCCCCC----CCCCcCchhcccccHHhcChhh
Confidence 4999999999999999 899999985 59999999999999999999999864 5788999999999999999999
Q ss_pred hcccCCHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHHHhhhcc-c-cchhHHHHHHHhcccCcchhhchHHHHhh
Q 002052 351 LSEKMPEDIKKEIEKAKVQLDKKDVDYEATLATKLAIARKVFNQEKDL-I-LNSSAFQNFFSENEDWLKPYAAFCFLRDF 428 (975)
Q Consensus 351 l~~~~~~~~~~~~~~~~~~l~~~~vDY~~v~~~K~~~L~~~f~~~~~~-~-~~~~~f~~F~~~~~~wL~~yA~F~aL~~~ 428 (975)
|++.. .+.+...........+.|||++|+.+|.++|+++|++|... . ....+|++||++++.||++||+|+||+++
T Consensus 87 l~e~~--~l~~~~~~~~~~~~~~~VDy~~v~~~K~~~L~~a~~~f~~~~~~~~~~~f~~F~~~~~~wL~dya~f~al~~~ 164 (513)
T TIGR00217 87 LDEFI--DLPLSLLKEAELRESDRVDYSKKIALKDTALKEAFLNFINRASADEVRSFAEFKKKQSDWLADFASFVAQKEA 164 (513)
T ss_pred ccccc--cCChhHHhhhhhcCCCcccHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 98862 11111111111112378999999999999999999998543 1 23468999999999999999999999999
Q ss_pred cC----CCCCCCCCc-CCCCCHHHHHHHHhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccccCCCch
Q 002052 429 FD----TSDHSQWGR-FSHYSKDKLAKLISEDSLHYDIIRFHYYVQFHLHIQLSEAAEYARKKGVVLKGDLPIGVDRNSV 503 (975)
Q Consensus 429 ~~----~~~w~~Wp~-~~~~~~~~l~~~~~~~~~~~~~i~f~~~lQ~~~~~Ql~~~~~yA~~~gI~L~gDLpigv~~dSa 503 (975)
++ +.+|++||+ ++.++++++++++ ++++++|+||+|+||+|++||+++++||+++||+|||||||||++|||
T Consensus 165 ~~~~~~~~~W~~WP~~~~~~~~~a~~~~~---~~~~~ei~f~~~lQ~~~~~Q~~~l~~yA~~~~I~L~gDlpi~v~~dsa 241 (513)
T TIGR00217 165 FFKESKNAGWVLWDKGIQKRNEPELFKLR---NILSKEIKFQEWLQWLFFSQFQALKRYANDMGIGLYGDLPVFVAYDSA 241 (513)
T ss_pred hCCCCCCCCcCCCCHhhcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCcceeCCCcH
Confidence 98 889999997 4889999999985 789999999999999999999999999999999999999999999999
Q ss_pred hhccCcccccccCcccCC------CCCCCcCCCCCCCCCCCHHHHHHhhhHHHHHHHHHHhccCCEEEeccccccceeee
Q 002052 504 DTWVYPNLFRMNTSTGAP------PDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMSKYFTAYRIDHILGFFRIWE 577 (975)
Q Consensus 504 DvW~~~~lF~~d~~aGaP------PD~Fs~~GQnWG~P~ynw~~l~~~gy~ww~~Rlr~~~~~~d~lRIDH~~Gf~r~W~ 577 (975)
|||++|++|++|.++|+| ||+||++|||||+|+|||++|+++||+||++||++++++||++||||||||+|+|+
T Consensus 242 DvWa~~~~F~l~~~~GaP~~agvpPd~Fs~~GQ~WG~P~y~w~~l~~~gy~ww~~rlr~~~~~~d~lRIDHf~Gf~r~w~ 321 (513)
T TIGR00217 242 DVWADPELFCLRASAGAPKPAGLGPDYFLEQGQNWGLPPYDWNVLKARGYEWWIKRLGANMQYADILRIDHFRGFVSLWW 321 (513)
T ss_pred HHHhCHHHhCCCcccCCCCCCCCCCCcccccCCCCCCCCcCHHHHHhcCcHHHHHHHHHHHHhCCeEEecchhhhceeee
Confidence 999999999999988888 99999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcccccceeecCCcccHHHHHhccccccccccccchhhhhhHHhhCCchHHHHHhhhccccCCcceeccccchHHH
Q 002052 578 LPEHAMTGLIGKFRPSIPLSQEELEREGIWDFDRLTRPYIRLEHLQEKFGSSWTYIAANFLSEFQKGRYEFTEDCNTEKK 657 (975)
Q Consensus 578 IP~~~~~g~~G~~~p~~p~~~~el~~~G~~~~~r~~~p~i~~~~l~~~fg~~~~~i~~~~l~~~~~g~y~f~~~~~~e~~ 657 (975)
||+++.++..|.|+++| | +.||
T Consensus 322 IP~g~~ta~~G~wv~~P----------g-----------------------------~~l~------------------- 343 (513)
T TIGR00217 322 VPAGESTAFNGAWVHYP----------G-----------------------------DDFF------------------- 343 (513)
T ss_pred ecCCCCCCCCCeeEeCC----------H-----------------------------HHHH-------------------
Confidence 99999999999999985 1 1111
Q ss_pred HHHHHhhhhhcccccchhhhHHHHHHHHhhhceeeecCCCCCCcccccccccCCcccCCChhHHHHHHHHhhhhhhhhhh
Q 002052 658 IAAKLKTCAEKSMLLDSEDKTRRDLFDLIQNIVLIRDPEDSKKFYPRFNLEDTSSFMDLDDHSKNVLKRLYYDYYFHRQE 737 (975)
Q Consensus 658 i~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~v~li~~~~~~~~~~pr~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~r~~ 737 (975)
+++ .
T Consensus 344 --~~l------------------------~-------------------------------------------------- 347 (513)
T TIGR00217 344 --NIL------------------------A-------------------------------------------------- 347 (513)
T ss_pred --HHH------------------------H--------------------------------------------------
Confidence 222 1
Q ss_pred HHHHHhhhccccccccCCC-ccEEeecCCCCCCcHHHHHHHhCCCceEEeeecCCCCCCCCC-CCCCCCCcEEecCCCCc
Q 002052 738 NLWRENALKTLPALLNSSD-MMACGEDLGLIPSCVHPVMEELGLIGLRIQRMPSEPGLEFGI-PSQYNYMTVCAPSCHDC 815 (975)
Q Consensus 738 ~~w~~~~~~~L~~l~~~t~-~lv~gEDLG~vp~~V~~~l~~lgi~g~rV~~f~~~~~~~f~~-p~~y~~~sVa~tsTHD~ 815 (975)
.+ +.+ |.|||||||+||++|+++|+++|||||||++|+++.++.+.. |++|+.+||||||||||
T Consensus 348 -----~e---------~~~~~~vIaEDLG~v~~~Vr~ll~~~gipGmkVl~Fe~~~~~~~~~~P~~y~~~~v~ytgTHD~ 413 (513)
T TIGR00217 348 -----NE---------SKDNLKIIGEDLGTVPEEVSRLRDEFNFPGMKVLYFAFDFDSSNRNLPHNYPKNAIVYTGTHDN 413 (513)
T ss_pred -----HH---------cCCCCcEEeeeCCCCCHHHHHHHHHcCCCCceEeEecccCCCCCCCCcccCCcCcEEEecCCcc
Confidence 00 112 679999999999999999999999999999999986554544 99999999999999999
Q ss_pred hhHHHHHhcCH--HHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHcCCCceeccchhhhhcCccccCCCCCCccccCC
Q 002052 816 STLRAWWEEDE--ERRRRFFKNVVGSDALPPSQCLPDITHFILRQHVESPSMWAIFPLQDLLALKEDYTTRPATEETIND 893 (975)
Q Consensus 816 ~TlrgWW~~~~--~~~~~~~~~~l~~~g~~p~~~~~~~~~~ii~~~~~S~s~l~i~plQD~L~l~~~~~~~~~~~eriN~ 893 (975)
+|++|||.+.. ++.++.+..+++.. + ..++.+++++.+++|+|.+||+||||+|+|+.+. |||+
T Consensus 414 dt~~~w~~~l~~~~~~~~~~~~~~~~~---~---~~~~~~~l~~~~~~s~a~~~i~~lqDll~l~~e~--------r~N~ 479 (513)
T TIGR00217 414 DLTLGEFLGISLDDYQKRYILHYLNCL---P---NFYVHWALIRSAMGSVNRNVIVYLQDLIGLGDEF--------SANI 479 (513)
T ss_pred hhHHHHHhcCCCchHHHHHHHHHcCCC---C---CcchHHHHHHHHHHhHHHHHHHHHHHHHcCCccc--------CCcC
Confidence 99999998744 44454555677642 1 1357899999999999999999999999998876 9999
Q ss_pred CCCCCCCcccccCCChhhhhCCHHHHHHHHHHHHHhCC
Q 002052 894 PTNPRHYWRYRVHVTLESLQKDKELKTTVKDLVCASGR 931 (975)
Q Consensus 894 Pg~~~~nW~~Rl~~~le~L~~~~~~~~~i~~l~~~~gR 931 (975)
|||.++||+|||+.+++++ ....+|+++++.+||
T Consensus 480 PGT~~~NW~~Rl~~~~~~~----~~~~~l~~l~~~~~r 513 (513)
T TIGR00217 480 PGTTYDNWIFRLLESLLDA----FLSQNLSFITRLYGR 513 (513)
T ss_pred CCCCCCCcceECCccccch----hhhHHHHHHHHHhCc
Confidence 9999999999999877655 456789999999988
No 8
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=100.00 E-value=1.8e-117 Score=1119.70 Aligned_cols=542 Identities=25% Similarity=0.403 Sum_probs=456.5
Q ss_pred ccCCCCceeeeEEEECCCCCeeEeeCCCeeEEecCCCCCCceEeeccccccCCCCcceEEeeecCccCCCCCCcccCHHH
Q 002052 218 IQRGDFPIKYKYCKSGKTGNISLETGANRNLNVDFSNNQPRYIFLSDGMMREMPWRGAGVAVPMFSVRSEADLGVGEFLD 297 (975)
Q Consensus 218 l~~~~~~~eYKyvi~~~~g~v~WE~G~NR~~~~p~~~~~p~~~~~~~~~~~~~~~R~~Gv~~~l~SLrs~~~~GiGdf~d 297 (975)
+|. +++++|+-+....++.. .+-+++.+|..|..|.. .. ...|.|||++|||||||+.+||||||+|
T Consensus 129 Lp~-~Lp~GYH~L~l~~~~~~----~~~~LivaP~r~~~~~~------l~--~~~r~wG~~~qLYsLRS~~~~GIGDfgd 195 (1693)
T PRK14507 129 LAI-PLTPGYHRLTVTVGDLR----AEAWVIAAPQRCWRPPA------LA--EGARDWGLAAQLYGLRSARNWGIGDFGD 195 (1693)
T ss_pred cCC-CCCCeeEEEEEecCCCc----eEEEEEEeCcccCChhh------hc--cCCcceEEEeeeeeeeeCCCCCcccHHH
Confidence 776 78999999999754321 13456778888764431 11 1358899999999999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCcCCccccCccccChhhhcccCC-HHHH-----HHHHHhhcccC
Q 002052 298 LKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQALSEKMP-EDIK-----KEIEKAKVQLD 371 (975)
Q Consensus 298 l~~~~d~~~~~G~~~~QilPl~~t~~~~~~~~~SPYs~~S~falNPlyI~l~~l~~~~~-~~~~-----~~~~~~~~~l~ 371 (975)
|++||||++++|+++|||||||++++..+ .++|||||+|+||+||+|||++.|++... .... .++.+...+++
T Consensus 196 L~~~~d~la~~Ga~~lqlnPLhA~~p~~p-~~~SPYsp~Sr~alNPlYIdle~l~e~~~~~~~~~~~~~~~~~~~~~~l~ 274 (1693)
T PRK14507 196 LGRLVRDAALRGASFLGLSPLHALFPTDP-AKASPYSPSSRLFLNTLYIDVEAVPDFAECEAARLLVHAPEFQARLEALR 274 (1693)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCCC-CCCCCcCcccccccChHhcCHhhccccccchhhhhhhcchhhhHHHhhcc
Confidence 99999999999999999999998877654 46899999999999999999999987531 1111 12222222334
Q ss_pred C-CCCCHHHHHHHHHHHHHHHHHhhhcc-----ccchhHHHHHHHhcccCcchhhchHHHHhhcCCC-----CCCCCCc-
Q 002052 372 K-KDVDYEATLATKLAIARKVFNQEKDL-----ILNSSAFQNFFSENEDWLKPYAAFCFLRDFFDTS-----DHSQWGR- 439 (975)
Q Consensus 372 ~-~~vDY~~v~~~K~~~L~~~f~~~~~~-----~~~~~~f~~F~~~~~~wL~~yA~F~aL~~~~~~~-----~w~~Wp~- 439 (975)
. +.|||++|+++|.++|+++|++|... .....+|++||++++.||++||+||||+++|++. +|.+||+
T Consensus 275 ~~~~VDY~~V~~~K~~~Lr~af~~f~~~~~~~~~~~~~~F~~F~~~~g~wL~dyAlF~AL~e~~~~~~~~~w~W~~WPe~ 354 (1693)
T PRK14507 275 AAELVDYAGVAEAKFEVLEALWRHFRARHLERNTGRDAGFRAFRAEGGESLRSHALFEALQEHFRAEDAHWWGWPDWPEA 354 (1693)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHhcchHHHHHHHHHHHHHHhcCCCCCCCCccCCChh
Confidence 3 78999999999999999999998643 1234689999999999999999999999999875 7899996
Q ss_pred CCCCCHHHHHHHHhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHcC--CeeeeccccccCCCchhhccCcccccccCc
Q 002052 440 FSHYSKDKLAKLISEDSLHYDIIRFHYYVQFHLHIQLSEAAEYARKKG--VVLKGDLPIGVDRNSVDTWVYPNLFRMNTS 517 (975)
Q Consensus 440 ~~~~~~~~l~~~~~~~~~~~~~i~f~~~lQ~~~~~Ql~~~~~yA~~~g--I~L~gDLpigv~~dSaDvW~~~~lF~~d~~ 517 (975)
++.++++++++++ ++++++|+||+|+||+|++||+++++||+++| |+|||||||||++||||||++|++|+++.+
T Consensus 355 ~r~~~~~av~~~~---~~~~~~v~F~~flQwla~~Ql~~~~~~A~~~GM~IgLigDLpVgV~~dsADvWa~p~lF~l~~~ 431 (1693)
T PRK14507 355 YRDPGTPAVRAFA---EEHAERVEYHEYLQWLADLQLAAAGERAQALGMRLGLYRDLAVGVDRGGSETWSHPELFANGAS 431 (1693)
T ss_pred hccCCHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEeeeceECCCcHHHhcCHhhhhcCCc
Confidence 5899999999985 68999999999999999999999999999999 999999999999999999999999999999
Q ss_pred ccCCCCCCCcCCCCCCCCCCCHHHHHHhhhHHHHHHHHHHhccCCEEEeccccccceeeeecCCCcccccceeecCCccc
Q 002052 518 TGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMSKYFTAYRIDHILGFFRIWELPEHAMTGLIGKFRPSIPLS 597 (975)
Q Consensus 518 aGaPPD~Fs~~GQnWG~P~ynw~~l~~~gy~ww~~Rlr~~~~~~d~lRIDH~~Gf~r~W~IP~~~~~g~~G~~~p~~p~~ 597 (975)
+|||||+||++|||||+|+|||++|+++||+||++|||++|++||++||||||||+|+||||.++ ++..|.|+++|.
T Consensus 432 aGAPPD~Fs~~GQ~WG~P~y~p~~L~~~gY~ww~~rlr~~m~~~g~lRIDH~lGl~RlW~IP~g~-ta~~G~yv~yP~-- 508 (1693)
T PRK14507 432 IGAPPDELNPKGQDWGLPPFDPLELERDGYAPFRALLRANMRHAGALRIDHVMQLMRLFWIPLGR-SAREGAYVAYPF-- 508 (1693)
T ss_pred cCCCCCcCccccccCCCcCcCHHHHHhcChHHHHHHHHHHHHHCCEEEeccHHhhhHhcccCCCC-CCCCCeEEECCH--
Confidence 99999999999999999999999999999999999999999999999999999999999999988 898999988741
Q ss_pred HHHHHhccccccccccccchhhhhhHHhhCCchHHHHHhhhccccCCcceeccccchHHHHHHHHhhhhhcccccchhhh
Q 002052 598 QEELEREGIWDFDRLTRPYIRLEHLQEKFGSSWTYIAANFLSEFQKGRYEFTEDCNTEKKIAAKLKTCAEKSMLLDSEDK 677 (975)
Q Consensus 598 ~~el~~~G~~~~~r~~~p~i~~~~l~~~fg~~~~~i~~~~l~~~~~g~y~f~~~~~~e~~i~~~l~~~~~~~~~~~~~~~ 677 (975)
++++ +++++ +
T Consensus 509 ---------------------------------------------------------~~ll-~~laL--E---------- 518 (1693)
T PRK14507 509 ---------------------------------------------------------EPML-AVLAL--E---------- 518 (1693)
T ss_pred ---------------------------------------------------------HHHH-HHHHH--H----------
Confidence 1111 33210 1
Q ss_pred HHHHHHHHhhhceeeecCCCCCCcccccccccCCcccCCChhHHHHHHHHhhhhhhhhhhHHHHHhhhccccccccCCCc
Q 002052 678 TRRDLFDLIQNIVLIRDPEDSKKFYPRFNLEDTSSFMDLDDHSKNVLKRLYYDYYFHRQENLWRENALKTLPALLNSSDM 757 (975)
Q Consensus 678 ~~~~L~~l~~~v~li~~~~~~~~~~pr~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~r~~~~w~~~~~~~L~~l~~~t~~ 757 (975)
+. ..+|
T Consensus 519 -----------------------------------------------------------------s~---------r~~~ 524 (1693)
T PRK14507 519 -----------------------------------------------------------------SH---------RNRC 524 (1693)
T ss_pred -----------------------------------------------------------------Hh---------cCCC
Confidence 11 1267
Q ss_pred cEEeecCCCCCCcHHHHHHHhCCCceEEeeecCCCCCCCCCCCCCCCCcEEecCCCCchhHHHHHhcCHHHHHHH-----
Q 002052 758 MACGEDLGLIPSCVHPVMEELGLIGLRIQRMPSEPGLEFGIPSQYNYMTVCAPSCHDCSTLRAWWEEDEERRRRF----- 832 (975)
Q Consensus 758 lv~gEDLG~vp~~V~~~l~~lgi~g~rV~~f~~~~~~~f~~p~~y~~~sVa~tsTHD~~TlrgWW~~~~~~~~~~----- 832 (975)
+|||||||+||++|+++|+++||+||||++|+++.+++|+.|++|+.+||||||||||+|++|||++.+...++.
T Consensus 525 ~VIgEDLGtVp~~Vr~~l~~~gi~Gm~VL~Fe~~~~~~~~~P~~y~~~sva~tgTHD~pTl~Gww~g~d~~lR~~Lgl~~ 604 (1693)
T PRK14507 525 LVIGEDLGTVPEGFRDALARAGVLSYRILYFEREDGGAFKPPAAYPADALAAVTTHDLPTLVGWWRGVDTDLRQSLGLYP 604 (1693)
T ss_pred eEEEecCCCCCHHHHHHHHHcCCCCceEEEeeecCCCCCCCcccCcCCeEEECCCCCCHhHHHHHhCCCHHHHHHhcCCC
Confidence 899999999999999999999999999999999866689999999999999999999999999998754322211
Q ss_pred ------------------HHHHhcCCCCCCC----------CCchHHHHHHHHHHHcCCCceeccchhhhhcCccccCCC
Q 002052 833 ------------------FKNVVGSDALPPS----------QCLPDITHFILRQHVESPSMWAIFPLQDLLALKEDYTTR 884 (975)
Q Consensus 833 ------------------~~~~l~~~g~~p~----------~~~~~~~~~ii~~~~~S~s~l~i~plQD~L~l~~~~~~~ 884 (975)
+...|...|..+. ..++++++++++.++.|||.|+|+||||+|++..
T Consensus 605 ~~~~~~~~~~~R~~~r~~ll~~L~~~g~l~~~~~~~~~~~~~~~~~l~~al~r~la~s~S~L~~v~leDllg~~~----- 679 (1693)
T PRK14507 605 DAERAEAQRTERVAERRRLLEALAAEGLLPSGEPPDAAPFPELTAELAEAVARYLARAPSALTAVQLEDVLGELE----- 679 (1693)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccccHHHHHHHHHHHhhCCcchhhcCHHHHhCCCC-----
Confidence 1233443343221 1246889999999999999999999999999975
Q ss_pred CCCccccCCCCCCCC--CcccccCCChhhhhCCHHHHHHHHHHHHHhCCCC
Q 002052 885 PATEETINDPTNPRH--YWRYRVHVTLESLQKDKELKTTVKDLVCASGRSC 933 (975)
Q Consensus 885 ~~~~eriN~Pg~~~~--nW~~Rl~~~le~L~~~~~~~~~i~~l~~~~gR~~ 933 (975)
|+|+|||.+. ||||||+.++|+|..++.+...++.|.+..++..
T Consensus 680 -----~~N~PGT~~eyPNWrrrL~~~le~l~~~~~~~~l~~~l~~~R~~~~ 725 (1693)
T PRK14507 680 -----QANVPGTTEGYPNWRRKLDRNLEAIAAPPRLQAVGGALAKLRPRLS 725 (1693)
T ss_pred -----CCCCCCCCCCCCCcCccCCCCHHHHhhCHHHHHHHHHHHHhcCCCc
Confidence 8999999866 9999999999999999999988887777655544
No 9
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=1.8e-117 Score=1121.21 Aligned_cols=483 Identities=28% Similarity=0.506 Sum_probs=427.5
Q ss_pred CcceEEeeecCccCCCCCCcccCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCcCCccccCccccChhhh
Q 002052 272 WRGAGVAVPMFSVRSEADLGVGEFLDLKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQAL 351 (975)
Q Consensus 272 ~R~~Gv~~~l~SLrs~~~~GiGdf~dl~~~~d~~~~~G~~~~QilPl~~t~~~~~~~~~SPYs~~S~falNPlyI~l~~l 351 (975)
.|.|||++|||||||+++||||||+||++|||||+++|+++|||||||++++..++ ..|||||+|+|||||||||++.|
T Consensus 722 ~r~~Gv~~~l~sLrs~~~~GiGDf~dl~~~vd~~a~~G~~~~qilPl~~~~~~~p~-~~SPYsp~S~~alNplyI~~~~l 800 (1221)
T PRK14510 722 GRACGILMHLYSLRSQRPWGIGDFEELYALVDFLAEGGQSLWGVNPLHPLGLGDPE-RASPYQPSSRRAGNPLLISLDLL 800 (1221)
T ss_pred CcceEEEEccccCCCCCCCCccCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCC-CCCCccchhccccChhhcCHhhc
Confidence 58999999999999999999999999999999999999999999999999976654 46999999999999999999999
Q ss_pred cccC--CHHHHHHHH---HhhcccC-CCCCCHHHHHHHHHHHHHHHHHhhhcccc------chhHHHHHHHhcccCcchh
Q 002052 352 SEKM--PEDIKKEIE---KAKVQLD-KKDVDYEATLATKLAIARKVFNQEKDLIL------NSSAFQNFFSENEDWLKPY 419 (975)
Q Consensus 352 ~~~~--~~~~~~~~~---~~~~~l~-~~~vDY~~v~~~K~~~L~~~f~~~~~~~~------~~~~f~~F~~~~~~wL~~y 419 (975)
++.. .. ....+. +...+++ .+.|||++|+.+|+++|+++|++|++... ...+|++||++++.||++|
T Consensus 801 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~~vDy~~v~~~K~~~L~~af~~f~~~~~~~~~~~~~~~f~~F~~~~g~wL~~y 879 (1221)
T PRK14510 801 PEAGLLTE-NEAALGSAGPELAKLSALGSVDYAWVEALKEKLLRAAYEAFRDKLPRYPLDLSSPEFDRFIEEGGDWLRRY 879 (1221)
T ss_pred cccccCcH-HHhhhhhhhhhhhhcCCCCcccHHHHHHHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHhCchHHHHH
Confidence 8852 11 111111 1111223 37899999999999999999999865322 2357999999999999999
Q ss_pred hchHHHHhhcCCCCCCCCCc-CCCCCHHHHHHHHhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCee--eecccc
Q 002052 420 AAFCFLRDFFDTSDHSQWGR-FSHYSKDKLAKLISEDSLHYDIIRFHYYVQFHLHIQLSEAAEYARKKGVVL--KGDLPI 496 (975)
Q Consensus 420 A~F~aL~~~~~~~~w~~Wp~-~~~~~~~~l~~~~~~~~~~~~~i~f~~~lQ~~~~~Ql~~~~~yA~~~gI~L--~gDLpi 496 (975)
|+||||+++|++.+|++||+ ++.++++++++++ ++|+++|+||+|+||+|++||+++++||+++||.| ||||||
T Consensus 880 A~F~aL~~~~~~~~W~~Wp~~~~~~~~~~~~~~~---~~~~~~i~f~~~lQ~~~~~Q~~~~~~~A~~~Gm~iGl~gDLpv 956 (1221)
T PRK14510 880 AIFKALKAKFPGKGWHQWPEEYRLRKPPALEAFA---EKYAEEVNYAKFLQYIADRQWQAAKDYAQEQGLSIGFYGDLAI 956 (1221)
T ss_pred HHHHHHHHHhCCCCccCCChhhccCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEeEEeeeee
Confidence 99999999999999999997 5899999999995 67999999999999999999999999999999866 999999
Q ss_pred ccCCCchhhccCcccccccCcccCCCCCCCcCCCCCCCCCCCHHHHHHhhhHHHHHHHHHHhccCCEEEeccccccceee
Q 002052 497 GVDRNSVDTWVYPNLFRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMSKYFTAYRIDHILGFFRIW 576 (975)
Q Consensus 497 gv~~dSaDvW~~~~lF~~d~~aGaPPD~Fs~~GQnWG~P~ynw~~l~~~gy~ww~~Rlr~~~~~~d~lRIDH~~Gf~r~W 576 (975)
||++||||||++|++|+++.++|||||+||++|||||+|+|||++|+++||+||++|||++|++||+|||||||||+|+|
T Consensus 957 gv~~dsadvWa~~~~f~l~~~~GaPPD~fs~~GQ~WG~P~y~w~~l~~~gy~~w~~rlr~~~~~~~~lRIDH~~G~~r~W 1036 (1221)
T PRK14510 957 GVAPDGADAWAERSCFALDVSIGAPPDYFNPEGQNWGLPPYDPRALRRDGYRWFIERIRANMRHAGALRIDHVRGLERLF 1036 (1221)
T ss_pred eeCCCcHHHhcCHHHhcCCCccCCCCCcCCcccccCCCcCcCHHHHHhcCcHHHHHHHHHHHHhCCeEEeccHHhhHHhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCcccccceeecCCcccHHHHHhccccccccccccchhhhhhHHhhCCchHHHHHhhhccccCCcceeccccchHH
Q 002052 577 ELPEHAMTGLIGKFRPSIPLSQEELEREGIWDFDRLTRPYIRLEHLQEKFGSSWTYIAANFLSEFQKGRYEFTEDCNTEK 656 (975)
Q Consensus 577 ~IP~~~~~g~~G~~~p~~p~~~~el~~~G~~~~~r~~~p~i~~~~l~~~fg~~~~~i~~~~l~~~~~g~y~f~~~~~~e~ 656 (975)
+|| +..+|..|.|+++| | ++
T Consensus 1037 ~IP-~~~~a~~G~~v~~P----------~-------------------------------------------------~~ 1056 (1221)
T PRK14510 1037 EVP-QGASAKEGAYLKGP----------G-------------------------------------------------EE 1056 (1221)
T ss_pred eCC-CCCCCCCCeEEECC----------H-------------------------------------------------HH
Confidence 999 77889999999875 1 11
Q ss_pred HHHHHHhhhhhcccccchhhhHHHHHHHHhhhceeeecCCCCCCcccccccccCCcccCCChhHHHHHHHHhhhhhhhhh
Q 002052 657 KIAAKLKTCAEKSMLLDSEDKTRRDLFDLIQNIVLIRDPEDSKKFYPRFNLEDTSSFMDLDDHSKNVLKRLYYDYYFHRQ 736 (975)
Q Consensus 657 ~i~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~v~li~~~~~~~~~~pr~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~r~ 736 (975)
+ +++|+. +
T Consensus 1057 l-~~~l~~--e--------------------------------------------------------------------- 1064 (1221)
T PRK14510 1057 L-FGQVAL--E--------------------------------------------------------------------- 1064 (1221)
T ss_pred H-HHHHHH--H---------------------------------------------------------------------
Confidence 1 122210 0
Q ss_pred hHHHHHhhhccccccccCCCccEEeecCCCCCCcHHHHHHHhCCCceEEeeecCCCCCCCCCCCCCCCCcEEecCCCCch
Q 002052 737 ENLWRENALKTLPALLNSSDMMACGEDLGLIPSCVHPVMEELGLIGLRIQRMPSEPGLEFGIPSQYNYMTVCAPSCHDCS 816 (975)
Q Consensus 737 ~~~w~~~~~~~L~~l~~~t~~lv~gEDLG~vp~~V~~~l~~lgi~g~rV~~f~~~~~~~f~~p~~y~~~sVa~tsTHD~~ 816 (975)
+ +.++|+|||||||+||++|+++|+++||+||||++|+++.++.|++|++||++||||||||||+
T Consensus 1065 --~-------------~r~~~~vIgEDLG~vp~~v~~~l~~~gi~g~~Vl~Fe~~~~~~~~~p~~~~~~~va~t~THD~~ 1129 (1221)
T PRK14510 1065 --S-------------QRAQCPVIGEDLGTIPSGVRELLAILGILSYRVLQFERLGEGNFLPPPLYNALAAAYVGTHDLP 1129 (1221)
T ss_pred --h-------------CccCCcEEEeeCCcCCHHHHHHHHHcCCCccEEEEeCccCCCCCCChhhCCCCcEEECCCCCCH
Confidence 0 1246889999999999999999999999999999999987678999999999999999999999
Q ss_pred hHHHHHhcCHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHcCCCceeccchhhhhcCccccCCCCCCccccCCCCC
Q 002052 817 TLRAWWEEDEERRRRFFKNVVGSDALPPSQCLPDITHFILRQHVESPSMWAIFPLQDLLALKEDYTTRPATEETINDPTN 896 (975)
Q Consensus 817 TlrgWW~~~~~~~~~~~~~~l~~~g~~p~~~~~~~~~~ii~~~~~S~s~l~i~plQD~L~l~~~~~~~~~~~eriN~Pg~ 896 (975)
||+|||++.+.+.++.+ + ++++|++.+++|+|+|||+||||+|+.. +|||+|||
T Consensus 1130 Tl~Gww~~~d~~~r~~l----~------------~~~~~~~~~~~s~s~l~i~plqD~lg~~----------~r~N~PGT 1183 (1221)
T PRK14510 1130 TLAGWWEGVDLSEKEQL----G------------AAEAVIEMLARSPAILVIIQLQDLLGSN----------VRMNLPGT 1183 (1221)
T ss_pred HHHHHHHCCCHHHHHHh----h------------HHHHHHHHHHhCCchheeecHHHhhCCc----------cCccCCCC
Confidence 99999998666555433 2 5899999999999999999999999943 49999999
Q ss_pred CCC--CcccccCCChhhhhCCHHHHHHHHHHHHHhCCC
Q 002052 897 PRH--YWRYRVHVTLESLQKDKELKTTVKDLVCASGRS 932 (975)
Q Consensus 897 ~~~--nW~~Rl~~~le~L~~~~~~~~~i~~l~~~~gR~ 932 (975)
.++ |||+|||.+++++..+++++++|+.|++.++|.
T Consensus 1184 ~~~~~nWR~rl~~~l~~~~~~~~~~~~l~~l~~~~~r~ 1221 (1221)
T PRK14510 1184 IRENPNWRRKLSAPVERLTLTQRACARLRGLAEKRGRL 1221 (1221)
T ss_pred CCCCCCcccccccChhhhccCHHHHHHHHHHHHHhCCC
Confidence 865 599999999999999999999999999999984
No 10
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-114 Score=994.47 Aligned_cols=496 Identities=32% Similarity=0.525 Sum_probs=420.1
Q ss_pred CcceEEeeecCccCCCCCCcccCHHH-HHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCcCCccccCccccChhh
Q 002052 272 WRGAGVAVPMFSVRSEADLGVGEFLD-LKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQA 350 (975)
Q Consensus 272 ~R~~Gv~~~l~SLrs~~~~GiGdf~d-l~~~~d~~~~~G~~~~QilPl~~t~~~~~~~~~SPYs~~S~falNPlyI~l~~ 350 (975)
.+.||+.|+||++|++.+|||||||| ++.|+|+++++|+++|||||||+|++.. ..+|||||+||+|+||+|||++.
T Consensus 11 ~~~~g~~v~L~~~~~~~~~GIGDfgdla~~~~d~~~~~g~~~~qi~Plh~~~~~~--~~~SPYs~~S~~a~N~~~Id~~~ 88 (520)
T COG1640 11 SMKWGSGVQLYSLRLPGSWGIGDFGDLAYLFVDFLARHGQDYWQILPLHATGPAY--EEDSPYSPSSRRALNPLYIDVEA 88 (520)
T ss_pred cccccceeEEeeeccCCCCCccchhhHHHHHHHHHHHccCCeEEeccCCcccccc--cCCCCCCchhhhccCceeecHHH
Confidence 36789999999999999999999998 5666667779999999999999998544 35799999999999999999999
Q ss_pred hcccCCHHHH-HHHHHhhcccCCCCCCHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHhcccCcchhhchHHHHhhc
Q 002052 351 LSEKMPEDIK-KEIEKAKVQLDKKDVDYEATLATKLAIARKVFNQEKDLILNSSAFQNFFSENEDWLKPYAAFCFLRDFF 429 (975)
Q Consensus 351 l~~~~~~~~~-~~~~~~~~~l~~~~vDY~~v~~~K~~~L~~~f~~~~~~~~~~~~f~~F~~~~~~wL~~yA~F~aL~~~~ 429 (975)
|++.. ..+. +++.........+.|||+.|+..|+++|+++|+.|++.....++|.+||++++.||.+||+|+||++++
T Consensus 89 l~e~~-~~~~~~~~~~l~~~~~~~~vdy~~v~~~K~~~L~~~~~~f~~~~~~~~~f~~F~~~~~~wL~d~A~F~Al~e~~ 167 (520)
T COG1640 89 LPEFQ-DFLLDKDLQALPQLRALDWVDYAKVTALKRKALEKAFANFKKRKEREKDFAAFCQEEGYWLDDYALFMALKEHF 167 (520)
T ss_pred hhhhh-hhccHHHHhhhhhhcccccccHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence 98861 1111 222222222223899999999999999999999987654456799999999999999999999999999
Q ss_pred CCCCCCCCCc-CCCCCHHHHHHHHhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccccCCCchhhccC
Q 002052 430 DTSDHSQWGR-FSHYSKDKLAKLISEDSLHYDIIRFHYYVQFHLHIQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTWVY 508 (975)
Q Consensus 430 ~~~~w~~Wp~-~~~~~~~~l~~~~~~~~~~~~~i~f~~~lQ~~~~~Ql~~~~~yA~~~gI~L~gDLpigv~~dSaDvW~~ 508 (975)
+..+|..||+ ++.++.+++.++. +.|+++|.||+|+||+|++||+++++||+++||+|||||||||+.||||||++
T Consensus 168 ~~~~W~~Wp~~~~~~~~~~~~~~~---~~~~eei~f~~~lQ~~~~~Q~~~~k~~A~~~~I~i~gDLpv~va~~saDvW~~ 244 (520)
T COG1640 168 HAAGWQVWPDSYRRRDLSAVSAFI---ELHAEEVDFHRFLQWLFFRQLAALKRYANDMGIGIIGDLPVGVAQDSADVWAN 244 (520)
T ss_pred cccccCCCChhhhccchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceEeecccceecCCchhhhcC
Confidence 9999999997 5778999999985 78999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCcccCCCCCCCcCCCCCCCCCCCHHHHHHhhhHHHHHHHHHHhccCCEEEeccccccceeeeecCCCcccccc
Q 002052 509 PNLFRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMSKYFTAYRIDHILGFFRIWELPEHAMTGLIG 588 (975)
Q Consensus 509 ~~lF~~d~~aGaPPD~Fs~~GQnWG~P~ynw~~l~~~gy~ww~~Rlr~~~~~~d~lRIDH~~Gf~r~W~IP~~~~~g~~G 588 (975)
|++|+++.+||||||+||++|||||+|+|||++|+++||+||++|||+++++||+|||||||||+|+|+||.++.++..|
T Consensus 245 ~~~f~~~~~~GaPPD~f~~~GQ~Wg~p~yn~~~l~~~~y~wwierlr~~~~~~~~lRIDHf~Gl~rlW~ip~g~~~a~g~ 324 (520)
T COG1640 245 PEYFCLDESAGAPPDVFNAQGQDWGLPPYNPEALKKDGYDWWIERLRANLKLYGILRIDHFRGLFRLWEIPYGEDTAQGG 324 (520)
T ss_pred cccccccccCCCCCCcccccccccCCCCCCHHHHHHcccHHHHHHHHHHHHhcCeeeeeeecchhhheeeeCCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred eeecCCcccHHHHHhccccccccccccchhhhhhHHhhCCchHHHHHhhhccccCCcceeccccchHHHHHHHHhhhhhc
Q 002052 589 KFRPSIPLSQEELEREGIWDFDRLTRPYIRLEHLQEKFGSSWTYIAANFLSEFQKGRYEFTEDCNTEKKIAAKLKTCAEK 668 (975)
Q Consensus 589 ~~~p~~p~~~~el~~~G~~~~~r~~~p~i~~~~l~~~fg~~~~~i~~~~l~~~~~g~y~f~~~~~~e~~i~~~l~~~~~~ 668 (975)
+|++.+ ++++ ..+
T Consensus 325 ~~~~~~------------------------------------------------------------~~~l-~~l------ 337 (520)
T COG1640 325 YWRYPP------------------------------------------------------------GKLL-FIL------ 337 (520)
T ss_pred cccCCH------------------------------------------------------------HHHH-HHH------
Confidence 887653 0111 111
Q ss_pred ccccchhhhHHHHHHHHhhhceeeecCCCCCCcccccccccCCcccCCChhHHHHHHHHhhhhhhhhhhHHHHHhhhccc
Q 002052 669 SMLLDSEDKTRRDLFDLIQNIVLIRDPEDSKKFYPRFNLEDTSSFMDLDDHSKNVLKRLYYDYYFHRQENLWRENALKTL 748 (975)
Q Consensus 669 ~~~~~~~~~~~~~L~~l~~~v~li~~~~~~~~~~pr~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~r~~~~w~~~~~~~L 748 (975)
+. ++
T Consensus 338 -----------------~l-------------------------------------------------------e~---- 341 (520)
T COG1640 338 -----------------AL-------------------------------------------------------EA---- 341 (520)
T ss_pred -----------------HH-------------------------------------------------------Hh----
Confidence 10 00
Q ss_pred cccccCCCccEEeecCCCCCCcHHHHHHHhCCCceEEeeecCCCC--CCCCCCCCCCCCcEEecCCCCchhHHHHHhcCH
Q 002052 749 PALLNSSDMMACGEDLGLIPSCVHPVMEELGLIGLRIQRMPSEPG--LEFGIPSQYNYMTVCAPSCHDCSTLRAWWEEDE 826 (975)
Q Consensus 749 ~~l~~~t~~lv~gEDLG~vp~~V~~~l~~lgi~g~rV~~f~~~~~--~~f~~p~~y~~~sVa~tsTHD~~TlrgWW~~~~ 826 (975)
..++|+|||||||+||++|+++|+++||+||||++|+.... +.|.++..|+++||+||||||||||+|||++.+
T Consensus 342 ----~~~~~~vIgEDLGtvp~eV~~~l~~~gi~g~kIl~Fe~~~~~~~~~~P~~~~~~nsva~tsTHD~ptl~gww~~~~ 417 (520)
T COG1640 342 ----LRANMLVIGEDLGTVPAEVRDLLAHLGIPGMKILRFEADNEDPSPFLPPNYYPPNSVATTSTHDLPTLRGWWEELD 417 (520)
T ss_pred ----hhcCCcEEecccCCCCHHHHHHHHHcCCCceEEEeecccCCcCCCCCChhhcccceeEEeccCCChhHHHHHhCCC
Confidence 01369999999999999999999999999999999977632 258888888899999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCC-CCCCchHHHHHHHHHH---HcCCCceeccchhhhhcCccccCCCCCCccccCCCCCCCCCcc
Q 002052 827 ERRRRFFKNVVGSDALP-PSQCLPDITHFILRQH---VESPSMWAIFPLQDLLALKEDYTTRPATEETINDPTNPRHYWR 902 (975)
Q Consensus 827 ~~~~~~~~~~l~~~g~~-p~~~~~~~~~~ii~~~---~~S~s~l~i~plQD~L~l~~~~~~~~~~~eriN~Pg~~~~nW~ 902 (975)
.+.++++..+|+..... -......+.+.+++.. +.|.|..+|+++||++.|+.+. |||+|||+.+||+
T Consensus 418 ~~~~~~~~~~l~~~~~~~~~~~~e~l~~~~~~~~~~~~~s~s~~~l~~~ql~~~lg~~~--------~~N~PgT~~~NW~ 489 (520)
T COG1640 418 EELRRRLGLLLPEAYDDRLAAIAELLVWLHLRSALMRYLSVSDSALLSLQLEDELGSEE--------RMNIPGTIYPNWR 489 (520)
T ss_pred HHHHHHHHHhhhhhhhhHHHhHHHHHHHHHHHhhHHHHhccCccceeccchhhcccccc--------ccCCCCCCCCCce
Confidence 88877665555321110 0111234666777767 8899999999999999998765 9999999999999
Q ss_pred cccCCChhhhhCCHHHHHHHHHHHHH
Q 002052 903 YRVHVTLESLQKDKELKTTVKDLVCA 928 (975)
Q Consensus 903 ~Rl~~~le~L~~~~~~~~~i~~l~~~ 928 (975)
|||+.+++++..+++++..++.+.+.
T Consensus 490 ~Rl~~~~~~~~~~~~l~~~~~~~~r~ 515 (520)
T COG1640 490 WRLHCSLETLFLNEDLNELLKLYGRA 515 (520)
T ss_pred eecCcchhhhhhhHHHHHHHHHHHHH
Confidence 99999999997666655555544443
No 11
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=99.81 E-value=1.5e-19 Score=169.55 Aligned_cols=101 Identities=68% Similarity=1.282 Sum_probs=88.6
Q ss_pred EEEEEEEEECCCCCEEEEEeccCCcCCCCCCCcccccccCCCCCccEEEEEEcCCCceEEEEEEEEeCCCCeEEeecCCC
Q 002052 24 TVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIAVPIGFSCEYSYYVVDDRKNLLRWEMGKK 103 (975)
Q Consensus 24 ~V~F~V~~~t~~Gq~L~VvGs~~eLG~W~~~~al~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv~d~~g~~i~WE~g~N 103 (975)
+|+|+|+|+|.+||+|+|+||+++||+|++++|++|++....+++.|+++|.+|.+..|||||++++.+|.+++||+|.|
T Consensus 1 ~l~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v~~~~~~~~~wE~g~n 80 (101)
T cd05815 1 TLSFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYVVDDRKSVLRSESGEK 80 (101)
T ss_pred CEEEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEEEcCCCcEEEeecCCC
Confidence 48999999999999999999999999999999999987543334679999999998899999999877788889999999
Q ss_pred ceEEcCCCCCCCceEEEeccc
Q 002052 104 RKLLLHETIKDGEVVELHDLW 124 (975)
Q Consensus 104 R~l~l~~~~~~g~~v~v~D~W 124 (975)
|.+.++.....+..++|.|.|
T Consensus 81 r~~~~~~~~~~~~~~~i~d~w 101 (101)
T cd05815 81 RKLVLPEGLQGGESVELRDLW 101 (101)
T ss_pred EeEECCccccCCcEEEEeeeC
Confidence 999988733345678999988
No 12
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=99.80 E-value=8.6e-20 Score=169.64 Aligned_cols=88 Identities=31% Similarity=0.594 Sum_probs=76.1
Q ss_pred ceEEEEEEEecccCCCCEEEEEcCccccCCCCcccccccccc----CCCcEEEEEeccCCCCceeeeEEEECCCCCeeEe
Q 002052 166 SVLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYA----GESVWEADCVIQRGDFPIKYKYCKSGKTGNISLE 241 (975)
Q Consensus 166 ~v~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~~----~~~~W~~~v~l~~~~~~~eYKyvi~~~~g~v~WE 241 (975)
++.|+|+|++ .+.+||+|+|+||+++||+|++.+|++|.+. .++.|+++|.+|. +.+|||||++++.+|.+.||
T Consensus 1 ~v~V~F~v~~-~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~-~~~~eYKy~i~~~~g~~~WE 78 (96)
T PF00686_consen 1 QVSVTFRVNY-QTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPA-GTPFEYKYVIKDADGNVIWE 78 (96)
T ss_dssp EEEEEEEESE----TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEET-TSEEEEEEEEEETTSEEEE-
T ss_pred CEEEEEEEEe-ECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcC-CCEEEEEEEEEeCCCCEEEC
Confidence 4789999976 5699999999999999999999999999986 4699999999999 77999999999999999999
Q ss_pred eCCCeeEEecCCCC
Q 002052 242 TGANRNLNVDFSNN 255 (975)
Q Consensus 242 ~G~NR~~~~p~~~~ 255 (975)
+|+||.+.+|..+.
T Consensus 79 ~g~nR~~~~~~~~~ 92 (96)
T PF00686_consen 79 SGENRVLTVPSSGS 92 (96)
T ss_dssp SSSEEEEE--SSSE
T ss_pred CCCCEEEECCCCCc
Confidence 99999999987754
No 13
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=99.78 E-value=4e-19 Score=165.13 Aligned_cols=88 Identities=36% Similarity=0.672 Sum_probs=74.7
Q ss_pred eEEEEEEEEEECCCCCEEEEEeccCCcCCCCCCCcccccccCC-CCCccEEEEEEcCCCceEEEEEEEEeCCCCeEEeec
Q 002052 22 SLTVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQ-DDELIWSGSIAVPIGFSCEYSYYVVDDRKNLLRWEM 100 (975)
Q Consensus 22 ~~~V~F~V~~~t~~Gq~L~VvGs~~eLG~W~~~~al~L~~~~~-~~~~~W~~~V~lp~~~~~eYKYvv~d~~g~~i~WE~ 100 (975)
++.|+|+|++.|++||+|+|+||+++||+|++++|++|.+.++ ..++.|+++|.+|.+..|||||++++.+|.+ .||.
T Consensus 1 ~v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i~~~~g~~-~WE~ 79 (96)
T PF00686_consen 1 QVSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVIKDADGNV-IWES 79 (96)
T ss_dssp EEEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEEEETTSEE-EE-S
T ss_pred CEEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEEEeCCCCE-EECC
Confidence 5899999988899999999999999999999999999999864 2347799999999999999999999877755 6999
Q ss_pred CCCceEEcCC
Q 002052 101 GKKRKLLLHE 110 (975)
Q Consensus 101 g~NR~l~l~~ 110 (975)
|+||.+.++.
T Consensus 80 g~nR~~~~~~ 89 (96)
T PF00686_consen 80 GENRVLTVPS 89 (96)
T ss_dssp SSEEEEE--S
T ss_pred CCCEEEECCC
Confidence 9999999987
No 14
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=99.78 E-value=8.6e-19 Score=164.01 Aligned_cols=97 Identities=41% Similarity=0.707 Sum_probs=86.0
Q ss_pred EEEEEEEecccCCCCEEEEEcCccccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEEECCC-CCeeEeeCCCe
Q 002052 168 LVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKSGKT-GNISLETGANR 246 (975)
Q Consensus 168 ~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~l~~~~~~~eYKyvi~~~~-g~v~WE~G~NR 246 (975)
.|+|+|+++++.+||+|+|+||+++||+|++.+|++|++..++.|++++.+|+.+.+|+|||++++.+ +.+.||.|.||
T Consensus 1 ~v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~~p~~~~~ieYKyvi~~~~~~~~~WE~g~nr 80 (99)
T cd05816 1 VVQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDVGFPIWEADIDISKDSFPFEYKYIIANKDSGVVSWENGPNR 80 (99)
T ss_pred CEEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCCCCCcEEEEEEeCCCCccEEEEEEEEeCCCCcEEEEcCCCe
Confidence 38999999999999999999999999999999999999999999999999998666899999999987 88999999999
Q ss_pred eEEecCCCCCCceEeecc
Q 002052 247 NLNVDFSNNQPRYIFLSD 264 (975)
Q Consensus 247 ~~~~p~~~~~p~~~~~~~ 264 (975)
.+.+|........++++|
T Consensus 81 ~~~~p~~~~~~~~~~~~~ 98 (99)
T cd05816 81 ELSAPSLKGESSTLIVSD 98 (99)
T ss_pred EEECCccCCCCceEEEeC
Confidence 999998654323344443
No 15
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=99.77 E-value=2.1e-18 Score=159.59 Aligned_cols=95 Identities=32% Similarity=0.659 Sum_probs=84.4
Q ss_pred EEEEEEEEEECCCCCEEEEEeccCCcCCCCCCCcccccccCCCCCccEEEEEEcCCCceEEEEEEEEeCCCCeEEeecCC
Q 002052 23 LTVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIAVPIGFSCEYSYYVVDDRKNLLRWEMGK 102 (975)
Q Consensus 23 ~~V~F~V~~~t~~Gq~L~VvGs~~eLG~W~~~~al~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv~d~~g~~i~WE~g~ 102 (975)
++|+|+|++.|.+||+|+|+||+++||+|++.+|++|++.+++. |++++.+|.+..|||||++++.+|.++ ||.+.
T Consensus 1 v~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~~~~---W~~~v~l~~~~~~eYKy~~~~~~~~~~-WE~~~ 76 (95)
T cd05808 1 VAVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAATYPV---WSGTVDLPAGTAIEYKYIKKDGSGTVT-WESGP 76 (95)
T ss_pred CeEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCCCCCC---EEEEEEeCCCCeEEEEEEEECCCCcEE-EecCC
Confidence 47999999999999999999999999999999999999877654 999999999999999999987666654 99999
Q ss_pred CceEEcCCCCCCCceEEEecccc
Q 002052 103 KRKLLLHETIKDGEVVELHDLWQ 125 (975)
Q Consensus 103 NR~l~l~~~~~~g~~v~v~D~W~ 125 (975)
||.+.++. +..++|.|.|.
T Consensus 77 nr~~~~~~----~~~~~i~d~w~ 95 (95)
T cd05808 77 NRTATTPA----SGTLTLNDTWR 95 (95)
T ss_pred CEEEECCC----CccEEEEeEEC
Confidence 99999865 23688999984
No 16
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=99.76 E-value=3.6e-18 Score=161.54 Aligned_cols=103 Identities=26% Similarity=0.554 Sum_probs=87.4
Q ss_pred CCceEEEEEEEEEECCCCCEEEEEeccCCcCCCCCCCcccccccCC-CCCccEEEEEEcCCCceEEEEEEEEeCCCCeEE
Q 002052 19 SVKSLTVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQ-DDELIWSGSIAVPIGFSCEYSYYVVDDRKNLLR 97 (975)
Q Consensus 19 ~~~~~~V~F~V~~~t~~Gq~L~VvGs~~eLG~W~~~~al~L~~~~~-~~~~~W~~~V~lp~~~~~eYKYvv~d~~g~~i~ 97 (975)
+|++|+|+|+|++.|.+||+|+|+||+++||+|+++++++|++... ..++.|++++.+|.+..|+|||++++.+|.+ +
T Consensus 3 ~~~~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~~veYKy~~~~~~~~~-~ 81 (106)
T cd05811 3 TATTVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGTSFEYKFIRKESDGSV-T 81 (106)
T ss_pred CCCEEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCCcEEEEEEEEcCCCcE-E
Confidence 5678999999999999999999999999999999999999987531 1235699999999999999999998766655 6
Q ss_pred eecCCCceEEcCCCCCCCceEEEeccc
Q 002052 98 WEMGKKRKLLLHETIKDGEVVELHDLW 124 (975)
Q Consensus 98 WE~g~NR~l~l~~~~~~g~~v~v~D~W 124 (975)
||.+.||.+.++.. .+..++|.|.|
T Consensus 82 WE~~~nr~~~~~~~--~~~~~~~~~~~ 106 (106)
T cd05811 82 WESDPNRSYTVPSG--CGTTATVDDSW 106 (106)
T ss_pred EecCCCeEEECCCC--CCcceEEeccC
Confidence 99999999999874 23457787776
No 17
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=99.76 E-value=2.7e-18 Score=161.24 Aligned_cols=90 Identities=22% Similarity=0.427 Sum_probs=80.9
Q ss_pred CceEEEEEEEecccCCCCEEEEEcCccccCCCCccccccccc----cCCCcEEEEEeccCCCCceeeeEEEECCCCCeeE
Q 002052 165 DSVLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSY----AGESVWEADCVIQRGDFPIKYKYCKSGKTGNISL 240 (975)
Q Consensus 165 ~~v~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~----~~~~~W~~~v~l~~~~~~~eYKyvi~~~~g~v~W 240 (975)
++++|+|+|+++++.+||+|+|+||+++||+|++.+|+.|.+ ..++.|++++++|+ +.+|||||++++.+|.+.|
T Consensus 1 ~~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~-~~~~eyK~~~~~~~~~~~W 79 (101)
T cd05807 1 DQVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPA-GTTIEFKFIKKNGDNTVTW 79 (101)
T ss_pred CcEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCC-CCcEEEEEEEECCCCCEEE
Confidence 468999999988889999999999999999999999996643 47899999999998 5599999999998899999
Q ss_pred eeCCCeeEEecCCCC
Q 002052 241 ETGANRNLNVDFSNN 255 (975)
Q Consensus 241 E~G~NR~~~~p~~~~ 255 (975)
|.|+||.+.+|..+.
T Consensus 80 E~g~nr~~~~p~~~~ 94 (101)
T cd05807 80 ESGSNHTYTAPSSTT 94 (101)
T ss_pred EeCCCEEEeCCCCCc
Confidence 999999999986553
No 18
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=99.73 E-value=1.6e-17 Score=153.84 Aligned_cols=85 Identities=32% Similarity=0.539 Sum_probs=78.5
Q ss_pred eEEEEEEEecccCCCCEEEEEcCccccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEEECCCCCeeEeeCCCe
Q 002052 167 VLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKSGKTGNISLETGANR 246 (975)
Q Consensus 167 v~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~l~~~~~~~eYKyvi~~~~g~v~WE~G~NR 246 (975)
|+|+|+|++. +.+||+|+|+||+++||+|++.+|++|++.+++.|++++++|. +.+|||||++.+.+|.+.||.|+||
T Consensus 1 v~v~F~v~~~-t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~-~~~~eYKy~~~~~~~~~~WE~~~nr 78 (95)
T cd05808 1 VAVTFNVTAT-TVWGQNVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPA-GTAIEYKYIKKDGSGTVTWESGPNR 78 (95)
T ss_pred CeEEEEEEEE-CCCCCEEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCC-CCeEEEEEEEECCCCcEEEecCCCE
Confidence 4699999995 5999999999999999999999999999999999999999998 4589999999988788999999999
Q ss_pred eEEecCC
Q 002052 247 NLNVDFS 253 (975)
Q Consensus 247 ~~~~p~~ 253 (975)
.+.+|..
T Consensus 79 ~~~~~~~ 85 (95)
T cd05808 79 TATTPAS 85 (95)
T ss_pred EEECCCC
Confidence 9998754
No 19
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=99.72 E-value=1.6e-17 Score=156.68 Aligned_cols=89 Identities=20% Similarity=0.341 Sum_probs=79.9
Q ss_pred ceEEEEEEEe-cccCCCCEEEEEcCccccCCCCcccc--c-cccccCCCcEEEEEeccCCCCceeeeEEEECCCCCeeEe
Q 002052 166 SVLVRFKICI-PNIEEDASVYVIGSTSMLGQWKLQNG--L-KLSYAGESVWEADCVIQRGDFPIKYKYCKSGKTGNISLE 241 (975)
Q Consensus 166 ~v~V~F~v~~-~~~~~Ge~v~IvGs~~eLG~W~~~~a--v-~L~~~~~~~W~~~v~l~~~~~~~eYKyvi~~~~g~v~WE 241 (975)
+++|+|.|++ +++.+||+|+|+||+++||+|+++++ + +|....++.|++++++|+ +.+|||||++++.+|.+.||
T Consensus 2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~~~W~~~~~lp~-~~~veyK~v~~~~~g~v~WE 80 (103)
T cd05820 2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCPNWPDWFVVASVPA-GTYIEFKFLKAPADGTGTWE 80 (103)
T ss_pred cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccCCCCCEEEEEEcCC-CCcEEEEEEEECCCCCEEEE
Confidence 5889999976 46799999999999999999999654 4 788889999999999998 56999999999988999999
Q ss_pred eCCCeeEEecCCCC
Q 002052 242 TGANRNLNVDFSNN 255 (975)
Q Consensus 242 ~G~NR~~~~p~~~~ 255 (975)
+|+||.+.+|..+.
T Consensus 81 ~g~Nr~~~~p~~~~ 94 (103)
T cd05820 81 GGSNHAYTTPSGGT 94 (103)
T ss_pred eCCCEeEECCCCCc
Confidence 99999999986654
No 20
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.72 E-value=3.7e-17 Score=151.30 Aligned_cols=92 Identities=38% Similarity=0.755 Sum_probs=81.8
Q ss_pred EEEEEEEECCCCCEEEEEeccCCcCCCCCCCcccccccC-CCCCccEEEEEEcCC--CceEEEEEEEEeCCCCeEEeecC
Q 002052 25 VKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVH-QDDELIWSGSIAVPI--GFSCEYSYYVVDDRKNLLRWEMG 101 (975)
Q Consensus 25 V~F~V~~~t~~Gq~L~VvGs~~eLG~W~~~~al~L~~~~-~~~~~~W~~~V~lp~--~~~~eYKYvv~d~~g~~i~WE~g 101 (975)
|+|+|++.|.+||+|+|+||+++||+|++.+|++|++.+ ++ .|+++|.+|. +..|+|||++++.+ ..++||.+
T Consensus 2 v~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~---~W~~~v~~~~~~~~~~~yKy~~~~~~-~~~~wE~~ 77 (96)
T cd05467 2 VRFQVRCTTQFGQSVYVVGSHPELGNWDPAKALRLNTSNSYP---LWTGEIPLPAPEGQVIEYKYVIVDDD-GNVQWESG 77 (96)
T ss_pred EEEEEEEECCCCCEEEEEeCcHHhCCcChhcCccccCCCCCC---cEEEEEEecCCCCCeEEEEEEEECCC-CCEEeccC
Confidence 799999999999999999999999999999999999987 54 5999999998 78999999998654 45679999
Q ss_pred CCceEEcCCCCCCCceEEEeccc
Q 002052 102 KKRKLLLHETIKDGEVVELHDLW 124 (975)
Q Consensus 102 ~NR~l~l~~~~~~g~~v~v~D~W 124 (975)
.||.+.++.. ..++|.|.|
T Consensus 78 ~~r~~~~~~~----~~~~i~d~w 96 (96)
T cd05467 78 SNRVLTVPST----SSLIVVDDW 96 (96)
T ss_pred CCeEEEcCCC----CcEEEEeeC
Confidence 9999998762 367888887
No 21
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=99.72 E-value=2.1e-17 Score=154.09 Aligned_cols=88 Identities=24% Similarity=0.418 Sum_probs=80.0
Q ss_pred eEEEEEEEecccCCCCEEEEEcCccccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEEECCCC---CeeEeeC
Q 002052 167 VLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKSGKTG---NISLETG 243 (975)
Q Consensus 167 v~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~l~~~~~~~eYKyvi~~~~g---~v~WE~G 243 (975)
|.|+|.+...++.+||+|+|+||+++||+|++.+|++|.+..++.|++++++|. +.+|||||++++.++ .+.||.|
T Consensus 1 v~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~-~~~veyKyv~~~~~~~~~~v~WE~g 79 (97)
T cd05810 1 VSVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPA-STNVEWKCLKRNETNPTAGVQWQGG 79 (97)
T ss_pred CeEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCC-CCeEEEEEEEEcCCCCcceEEEeeC
Confidence 579999887777999999999999999999999999999999999999999998 579999999998765 5899999
Q ss_pred CCeeEEecCCCC
Q 002052 244 ANRNLNVDFSNN 255 (975)
Q Consensus 244 ~NR~~~~p~~~~ 255 (975)
+||.+.+|....
T Consensus 80 ~Nr~~~~p~~~~ 91 (97)
T cd05810 80 GNNQLTTGNSTA 91 (97)
T ss_pred CCEEEeCCCCCc
Confidence 999999987743
No 22
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=99.71 E-value=5e-17 Score=153.77 Aligned_cols=90 Identities=20% Similarity=0.446 Sum_probs=81.8
Q ss_pred CCceEEEEEEEecccCCCCEEEEEcCccccCCCCcccccccccc----CCCcEEEEEeccCCCCceeeeEEEECCCCCee
Q 002052 164 EDSVLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYA----GESVWEADCVIQRGDFPIKYKYCKSGKTGNIS 239 (975)
Q Consensus 164 ~~~v~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~~----~~~~W~~~v~l~~~~~~~eYKyvi~~~~g~v~ 239 (975)
++.+.|+|+|.+++ .+||+|+|+||+++||+|++.+|++|++. +++.|++++.+|+ +.+|+|||++++.+|.+.
T Consensus 4 ~~~v~V~F~i~~~t-~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~-~~~veYKy~~~~~~~~~~ 81 (106)
T cd05811 4 ATTVAVTFNERVTT-SYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPA-GTSFEYKFIRKESDGSVT 81 (106)
T ss_pred CCEEEEEEEEeeEc-CCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCC-CCcEEEEEEEEcCCCcEE
Confidence 35689999999986 99999999999999999999999999864 4689999999998 568999999998888999
Q ss_pred EeeCCCeeEEecCCCC
Q 002052 240 LETGANRNLNVDFSNN 255 (975)
Q Consensus 240 WE~G~NR~~~~p~~~~ 255 (975)
||+|+||.+.+|..+.
T Consensus 82 WE~~~nr~~~~~~~~~ 97 (106)
T cd05811 82 WESDPNRSYTVPSGCG 97 (106)
T ss_pred EecCCCeEEECCCCCC
Confidence 9999999999997764
No 23
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=99.71 E-value=4.3e-17 Score=153.05 Aligned_cols=99 Identities=19% Similarity=0.385 Sum_probs=81.5
Q ss_pred ceEEEEEEEEE-ECCCCCEEEEEeccCCcCCCCCCCcccccccC-CCCCccEEEEEEcCCCceEEEEEEEEeCCCCeEEe
Q 002052 21 KSLTVKFRIPY-YTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVH-QDDELIWSGSIAVPIGFSCEYSYYVVDDRKNLLRW 98 (975)
Q Consensus 21 ~~~~V~F~V~~-~t~~Gq~L~VvGs~~eLG~W~~~~al~L~~~~-~~~~~~W~~~V~lp~~~~~eYKYvv~d~~g~~i~W 98 (975)
++|.|+|+|++ .|.+||+|+|+||+++||+|++.+|+.|.+.. ...++.|++++++|.+..|||||++++.+|.+ .|
T Consensus 1 ~~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~~~eyK~~~~~~~~~~-~W 79 (101)
T cd05807 1 DQVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGTTIEFKFIKKNGDNTV-TW 79 (101)
T ss_pred CcEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCCcEEEEEEEECCCCCE-EE
Confidence 46999999975 59999999999999999999999999765432 23356799999999999999999999876766 59
Q ss_pred ecCCCceEEcCCCCCCCceEEEeccc
Q 002052 99 EMGKKRKLLLHETIKDGEVVELHDLW 124 (975)
Q Consensus 99 E~g~NR~l~l~~~~~~g~~v~v~D~W 124 (975)
|.|.||.+.++.. . ...+.++|
T Consensus 80 E~g~nr~~~~p~~-~---~~~~~~~~ 101 (101)
T cd05807 80 ESGSNHTYTAPSS-T---TGTIRVNW 101 (101)
T ss_pred EeCCCEEEeCCCC-C---ceEEEeeC
Confidence 9999999999872 2 23555555
No 24
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=99.70 E-value=8.2e-17 Score=148.71 Aligned_cols=82 Identities=24% Similarity=0.470 Sum_probs=73.8
Q ss_pred eEEEEEEEEEECCCCCEEEEEeccCCcCCCCCCCcccccccCCCCCccEEEEEEcCCCceEEEEEEEEeCCCCeEEeecC
Q 002052 22 SLTVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIAVPIGFSCEYSYYVVDDRKNLLRWEMG 101 (975)
Q Consensus 22 ~~~V~F~V~~~t~~Gq~L~VvGs~~eLG~W~~~~al~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv~d~~g~~i~WE~g 101 (975)
.|+|+|+|+|.|.+||+|+|+||+++||+|+ ++++|++.++ .|++++++|.+..|||||++++.+|.+ .||.|
T Consensus 1 ~~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~--~~~~l~~~~~----~W~~~~~l~~~~~ieyKy~~~~~~~~v-~WE~g 73 (92)
T cd05818 1 KVKLQVRLDHQVKFGEHVAILGSTKELGSWK--KKVPMNWTEN----GWVCDLELDGGELVEYKFVIVKRDGSV-IWEGG 73 (92)
T ss_pred CEEEEEEEEEEcCCCCEEEEEeChHHHCCCC--CCCccccCCC----CEEEEEEeCCCCcEEEEEEEEcCCCCE-EEEeC
Confidence 3799999999999999999999999999999 5678988753 399999999999999999999877755 59999
Q ss_pred CCceEEcCC
Q 002052 102 KKRKLLLHE 110 (975)
Q Consensus 102 ~NR~l~l~~ 110 (975)
+||.+.++.
T Consensus 74 ~Nr~~~~~~ 82 (92)
T cd05818 74 NNRVLELPK 82 (92)
T ss_pred CCEEEEccC
Confidence 999999987
No 25
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.70 E-value=4.6e-17 Score=152.68 Aligned_cols=83 Identities=29% Similarity=0.600 Sum_probs=75.1
Q ss_pred EEEEEEEECCCCCEEEEEeccCCcCCCCCCCcccccccCCCCCccEEEEEEcCCCceEEEEEEEEeC-CCCeEEeecCCC
Q 002052 25 VKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIAVPIGFSCEYSYYVVDD-RKNLLRWEMGKK 103 (975)
Q Consensus 25 V~F~V~~~t~~Gq~L~VvGs~~eLG~W~~~~al~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv~d~-~g~~i~WE~g~N 103 (975)
|+|+|+++|.+||+|+|+||+++||+|+++++++|++.+++ .|++++.+|.+..|||||++++. ++..++||.+.|
T Consensus 2 v~F~i~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~~~---~W~~~v~lp~~~~veYKY~i~~~~~~~~~~WE~g~n 78 (100)
T cd05817 2 VTFKIHYPTQFGEAVYISGNCNQLGNWNPSKAKRMQWNEGD---LWTVDVGIPESVYIEYKYFVSNYDDPNTVLWESGPN 78 (100)
T ss_pred EEEEEEEEcCCCCEEEEEeCcHHHCCCCccccCcccCCCCC---CEEEEEEECCCCcEEEEEEEEecCCCCCeEecCCCC
Confidence 79999999999999999999999999999999999998865 49999999998899999999863 335678999999
Q ss_pred ceEEcCC
Q 002052 104 RKLLLHE 110 (975)
Q Consensus 104 R~l~l~~ 110 (975)
|.+.+..
T Consensus 79 r~~~~~~ 85 (100)
T cd05817 79 RVLRTNH 85 (100)
T ss_pred EEEEeCc
Confidence 9998765
No 26
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=99.69 E-value=1e-16 Score=148.04 Aligned_cols=84 Identities=25% Similarity=0.445 Sum_probs=75.3
Q ss_pred eEEEEEEEecccCCCCEEEEEcCccccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEEECCCCCeeEeeCCCe
Q 002052 167 VLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKSGKTGNISLETGANR 246 (975)
Q Consensus 167 v~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~l~~~~~~~eYKyvi~~~~g~v~WE~G~NR 246 (975)
+.|+|++++.+ .+||+|+|+||+++||+|++ +++|++. .+.|++++++|+ +.+|||||++++.+|.+.||.|+||
T Consensus 2 ~~v~F~~~~~~-~~Gq~l~v~G~~~~LG~W~~--~~~l~~~-~~~W~~~~~l~~-~~~ieyKy~~~~~~~~v~WE~g~Nr 76 (92)
T cd05818 2 VKLQVRLDHQV-KFGEHVAILGSTKELGSWKK--KVPMNWT-ENGWVCDLELDG-GELVEYKFVIVKRDGSVIWEGGNNR 76 (92)
T ss_pred EEEEEEEEEEc-CCCCEEEEEeChHHHCCCCC--CCccccC-CCCEEEEEEeCC-CCcEEEEEEEEcCCCCEEEEeCCCE
Confidence 67999999976 99999999999999999994 5788887 467999999998 4699999999998899999999999
Q ss_pred eEEecCCCC
Q 002052 247 NLNVDFSNN 255 (975)
Q Consensus 247 ~~~~p~~~~ 255 (975)
.+.+|....
T Consensus 77 ~~~~~~~~~ 85 (92)
T cd05818 77 VLELPKEGN 85 (92)
T ss_pred EEEccCCCC
Confidence 999986654
No 27
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=99.69 E-value=1.6e-16 Score=148.68 Aligned_cols=95 Identities=33% Similarity=0.567 Sum_probs=79.6
Q ss_pred EEEEEEEEE-CCCCCEEEEEeccCCcCCCCCCCcccccccCCCCCccEEEEEEcCCCc-eEEEEEEEEeCCCCeEEeecC
Q 002052 24 TVKFRIPYY-THWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIAVPIGF-SCEYSYYVVDDRKNLLRWEMG 101 (975)
Q Consensus 24 ~V~F~V~~~-t~~Gq~L~VvGs~~eLG~W~~~~al~L~~~~~~~~~~W~~~V~lp~~~-~~eYKYvv~d~~g~~i~WE~g 101 (975)
+|+|+|.++ +.+||+|+|+||+++||+|+++++++|++.+++ .|++++.+|.+. .|||||++++.++..++||.|
T Consensus 1 ~v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~---~W~~~v~~p~~~~~ieYKyvi~~~~~~~~~WE~g 77 (99)
T cd05816 1 VVQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDVGFP---IWEADIDISKDSFPFEYKYIIANKDSGVVSWENG 77 (99)
T ss_pred CEEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCCCCC---cEEEEEEeCCCCccEEEEEEEEeCCCCcEEEEcC
Confidence 489999998 899999999999999999999999999987764 599999999874 899999999755245679999
Q ss_pred CCceEEcCCCCCCC-ceEEEec
Q 002052 102 KKRKLLLHETIKDG-EVVELHD 122 (975)
Q Consensus 102 ~NR~l~l~~~~~~g-~~v~v~D 122 (975)
.||.+.++.. ... ..+++.|
T Consensus 78 ~nr~~~~p~~-~~~~~~~~~~~ 98 (99)
T cd05816 78 PNRELSAPSL-KGESSTLIVSD 98 (99)
T ss_pred CCeEEECCcc-CCCCceEEEeC
Confidence 9999999873 222 4555655
No 28
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=99.68 E-value=1.1e-16 Score=149.86 Aligned_cols=86 Identities=23% Similarity=0.354 Sum_probs=76.2
Q ss_pred ceEEEEEEEecccCCCCEEEEEcCccccCCCCcccc-cccc-ccCCCcEEEEEeccCCCCceeeeEEEECCCC-CeeEee
Q 002052 166 SVLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNG-LKLS-YAGESVWEADCVIQRGDFPIKYKYCKSGKTG-NISLET 242 (975)
Q Consensus 166 ~v~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~a-v~L~-~~~~~~W~~~v~l~~~~~~~eYKyvi~~~~g-~v~WE~ 242 (975)
+|+|+|+|+++++.+||+|+|+||+++||+|++.++ +.|. ...++.|++++++|+ +.+|||||++++.+| .+.||+
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~-~~~veyKyv~~~~~~~~~~WE~ 80 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPA-GRNIEFKAIKKSKDGTNKSWQG 80 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecC-CCcEEEEEEEEcCCCCeeEEec
Confidence 689999998888899999999999999999999853 4443 356799999999998 569999999999888 789999
Q ss_pred CCCeeEEecC
Q 002052 243 GANRNLNVDF 252 (975)
Q Consensus 243 G~NR~~~~p~ 252 (975)
|+||.+.+|.
T Consensus 81 g~nr~~~~p~ 90 (99)
T cd05809 81 GQQSWYPVPL 90 (99)
T ss_pred CCCeeEECCC
Confidence 9999999986
No 29
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.67 E-value=1.9e-16 Score=146.49 Aligned_cols=84 Identities=32% Similarity=0.584 Sum_probs=77.4
Q ss_pred EEEEEEecccCCCCEEEEEcCccccCCCCccccccccccC-CCcEEEEEeccC-CCCceeeeEEEECCCCCeeEeeCCCe
Q 002052 169 VRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAG-ESVWEADCVIQR-GDFPIKYKYCKSGKTGNISLETGANR 246 (975)
Q Consensus 169 V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~~~-~~~W~~~v~l~~-~~~~~eYKyvi~~~~g~v~WE~G~NR 246 (975)
|+|+|++ .+.+||+|+|+||+++||+|++.+|++|++.+ ++.|++++++|. .+.+|+|||++++.++.+.||.|+||
T Consensus 2 v~f~i~~-~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~W~~~v~~~~~~~~~~~yKy~~~~~~~~~~wE~~~~r 80 (96)
T cd05467 2 VRFQVRC-TTQFGQSVYVVGSHPELGNWDPAKALRLNTSNSYPLWTGEIPLPAPEGQVIEYKYVIVDDDGNVQWESGSNR 80 (96)
T ss_pred EEEEEEE-ECCCCCEEEEEeCcHHhCCcChhcCccccCCCCCCcEEEEEEecCCCCCeEEEEEEEECCCCCEEeccCCCe
Confidence 8999999 55999999999999999999999999999998 999999999997 35689999999998888999999999
Q ss_pred eEEecCC
Q 002052 247 NLNVDFS 253 (975)
Q Consensus 247 ~~~~p~~ 253 (975)
.+.+|..
T Consensus 81 ~~~~~~~ 87 (96)
T cd05467 81 VLTVPST 87 (96)
T ss_pred EEEcCCC
Confidence 9998754
No 30
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=99.67 E-value=2.5e-16 Score=147.82 Aligned_cols=86 Identities=23% Similarity=0.441 Sum_probs=76.4
Q ss_pred EEEEEEEecccCCCCEEEEEcCccccCCCCcccccccccc---CCCcEEEEEeccCCCCceeeeEEEECCCCC-eeEeeC
Q 002052 168 LVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYA---GESVWEADCVIQRGDFPIKYKYCKSGKTGN-ISLETG 243 (975)
Q Consensus 168 ~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~~---~~~~W~~~v~l~~~~~~~eYKyvi~~~~g~-v~WE~G 243 (975)
+|+|++.+.+ .+||+|+|+||+++||+|++.+|++|++. +++.|+++|++|. +.+|||||++++.+|. +.||.|
T Consensus 1 ~l~f~i~~~t-~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~-~~~veYky~v~~~~~~~~~wE~g 78 (101)
T cd05815 1 TLSFKLPYYT-QWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPP-GFSSEYNYYVVDDRKSVLRSESG 78 (101)
T ss_pred CEEEEEEEEc-cCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCC-CCcEEEEEEEEcCCCcEEEeecC
Confidence 3899999987 99999999999999999999999999764 4558999999998 6789999999887776 579999
Q ss_pred CCeeEEecCCCC
Q 002052 244 ANRNLNVDFSNN 255 (975)
Q Consensus 244 ~NR~~~~p~~~~ 255 (975)
+||.+..|..+.
T Consensus 79 ~nr~~~~~~~~~ 90 (101)
T cd05815 79 EKRKLVLPEGLQ 90 (101)
T ss_pred CCEeEECCcccc
Confidence 999999987554
No 31
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.67 E-value=3.6e-16 Score=145.14 Aligned_cols=92 Identities=32% Similarity=0.577 Sum_probs=79.4
Q ss_pred EEEEEEEEEECCCC-CEEEEEeccCCcCCCCCCCcccccccCCCCCccEEEEEEcCCCceEEEEEEEEeCCCCeEEeecC
Q 002052 23 LTVKFRIPYYTHWG-QSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIAVPIGFSCEYSYYVVDDRKNLLRWEMG 101 (975)
Q Consensus 23 ~~V~F~V~~~t~~G-q~L~VvGs~~eLG~W~~~~al~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv~d~~g~~i~WE~g 101 (975)
++|+|+|+++|.+| |.|+|+||+++||+|++ +++|++.+++ .|+++|.+|.+..|||||++.+ ++.+++||.+
T Consensus 1 v~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~--~~~l~~~~~~---~W~~~v~lp~~~~ieYky~~~~-~~~~~~WE~~ 74 (95)
T cd05813 1 VNVTFRVHYITHSDAQLVAVTGDHEELGSWHS--YIPLQYVKDG---FWSASVSLPVDTHVEWKFVLVE-NGQVTRWEEC 74 (95)
T ss_pred CeEEEEEEeeeCCCCeEEEEEcChHHHCCCCc--cccCcCCCCC---CEEEEEEecCCCcEEEEEEEEc-CCCEEEeecC
Confidence 47999999997765 88899999999999995 7999887654 5999999999999999999975 6778889999
Q ss_pred CCceEEcCCCCCCCceEEEecccc
Q 002052 102 KKRKLLLHETIKDGEVVELHDLWQ 125 (975)
Q Consensus 102 ~NR~l~l~~~~~~g~~v~v~D~W~ 125 (975)
.||.+... ...++|.|.|+
T Consensus 75 ~nr~~~~~-----~~~~~v~d~w~ 93 (95)
T cd05813 75 SNRLLETG-----HEDKIVHKWWG 93 (95)
T ss_pred CCeEEEcC-----CceEEEehhcc
Confidence 99998832 24699999996
No 32
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.65 E-value=3.5e-16 Score=146.72 Aligned_cols=81 Identities=30% Similarity=0.575 Sum_probs=75.1
Q ss_pred EEEEEEecccCCCCEEEEEcCccccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEEECCC--CCeeEeeCCCe
Q 002052 169 VRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKSGKT--GNISLETGANR 246 (975)
Q Consensus 169 V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~l~~~~~~~eYKyvi~~~~--g~v~WE~G~NR 246 (975)
|+|+|+++ +.+||+|+|+||+++||+|++.+|++|++.+++.|++++.+|+ +.+|||||++++.+ +.+.||.|.||
T Consensus 2 v~F~i~~~-t~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~~~~W~~~v~lp~-~~~veYKY~i~~~~~~~~~~WE~g~nr 79 (100)
T cd05817 2 VTFKIHYP-TQFGEAVYISGNCNQLGNWNPSKAKRMQWNEGDLWTVDVGIPE-SVYIEYKYFVSNYDDPNTVLWESGPNR 79 (100)
T ss_pred EEEEEEEE-cCCCCEEEEEeCcHHHCCCCccccCcccCCCCCCEEEEEEECC-CCcEEEEEEEEecCCCCCeEecCCCCE
Confidence 89999998 5999999999999999999999999999999999999999998 77899999998643 67899999999
Q ss_pred eEEec
Q 002052 247 NLNVD 251 (975)
Q Consensus 247 ~~~~p 251 (975)
.+.+.
T Consensus 80 ~~~~~ 84 (100)
T cd05817 80 VLRTN 84 (100)
T ss_pred EEEeC
Confidence 99874
No 33
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=99.64 E-value=9.6e-16 Score=144.52 Aligned_cols=96 Identities=24% Similarity=0.363 Sum_probs=79.3
Q ss_pred eEEEEEEEEEE--CCCCCEEEEEeccCCcCCCCCCCc--c-cccccCCCCCccEEEEEEcCCCceEEEEEEEEeCCCCeE
Q 002052 22 SLTVKFRIPYY--THWGQSLLVCGSEPVLGSWDVKKG--F-LLSPVHQDDELIWSGSIAVPIGFSCEYSYYVVDDRKNLL 96 (975)
Q Consensus 22 ~~~V~F~V~~~--t~~Gq~L~VvGs~~eLG~W~~~~a--l-~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv~d~~g~~i 96 (975)
++.|+|.|+.. |.+||+|+|+||+++||+|++..+ + +|.+... +.|++++++|.+..|||||++++.+|.+
T Consensus 2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~---~~W~~~~~lp~~~~veyK~v~~~~~g~v- 77 (103)
T cd05820 2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCPNW---PDWFVVASVPAGTYIEFKFLKAPADGTG- 77 (103)
T ss_pred cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccCCC---CCEEEEEEcCCCCcEEEEEEEECCCCCE-
Confidence 48899999854 899999999999999999999653 4 7776544 5599999999999999999999767765
Q ss_pred EeecCCCceEEcCCCCCCCceEEEecccc
Q 002052 97 RWEMGKKRKLLLHETIKDGEVVELHDLWQ 125 (975)
Q Consensus 97 ~WE~g~NR~l~l~~~~~~g~~v~v~D~W~ 125 (975)
.||.|.||.+.++.. + ...+..+|+
T Consensus 78 ~WE~g~Nr~~~~p~~---~-~~~~~~~w~ 102 (103)
T cd05820 78 TWEGGSNHAYTTPSG---G-TGTVTVTWQ 102 (103)
T ss_pred EEEeCCCEeEECCCC---C-cEEEEEEec
Confidence 599999999999872 2 245666775
No 34
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=99.62 E-value=1.9e-15 Score=141.46 Aligned_cols=96 Identities=20% Similarity=0.371 Sum_probs=76.6
Q ss_pred eEEEEEEEEE-ECCCCCEEEEEeccCCcCCCCCCCc-ccccccCCCCCccEEEEEEcCCCceEEEEEEEEeCCCCeEEee
Q 002052 22 SLTVKFRIPY-YTHWGQSLLVCGSEPVLGSWDVKKG-FLLSPVHQDDELIWSGSIAVPIGFSCEYSYYVVDDRKNLLRWE 99 (975)
Q Consensus 22 ~~~V~F~V~~-~t~~Gq~L~VvGs~~eLG~W~~~~a-l~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv~d~~g~~i~WE 99 (975)
++.|+|+|+. .|.+||.|+|+||+++||+|++.++ +.|... ..++.|++++++|.+..|||||++++.+|..+.||
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~--~~~~~W~~~~~lp~~~~veyKyv~~~~~~~~~~WE 79 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYN--SHSNDWRGTVHLPAGRNIEFKAIKKSKDGTNKSWQ 79 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccC--CCCCCEEEEEEecCCCcEEEEEEEEcCCCCeeEEe
Confidence 5899999965 5999999999999999999998852 444321 12356999999999999999999998777455699
Q ss_pred cCCCceEEcCCCCCCCceEEEeccc
Q 002052 100 MGKKRKLLLHETIKDGEVVELHDLW 124 (975)
Q Consensus 100 ~g~NR~l~l~~~~~~g~~v~v~D~W 124 (975)
.|.||.+.++.+ ..++.+.|
T Consensus 80 ~g~nr~~~~p~~-----~~~~~~~~ 99 (99)
T cd05809 80 GGQQSWYPVPLG-----TTSYTSSW 99 (99)
T ss_pred cCCCeeEECCCC-----ccEEEeeC
Confidence 999999998862 23555555
No 35
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=99.62 E-value=1.3e-15 Score=142.06 Aligned_cols=86 Identities=28% Similarity=0.526 Sum_probs=75.6
Q ss_pred EEEEEEEE-EECCCCCEEEEEeccCCcCCCCCCCcccccccCCCCCccEEEEEEcCCCceEEEEEEEEeCCC--CeEEee
Q 002052 23 LTVKFRIP-YYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIAVPIGFSCEYSYYVVDDRK--NLLRWE 99 (975)
Q Consensus 23 ~~V~F~V~-~~t~~Gq~L~VvGs~~eLG~W~~~~al~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv~d~~g--~~i~WE 99 (975)
+.|+|.+. +.|.+||+|+|+||+++||+|++.+|++|++... +.|+++|++|.+..|||||++++.++ ..+.||
T Consensus 1 v~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~~~---~~W~~~v~lp~~~~veyKyv~~~~~~~~~~v~WE 77 (97)
T cd05810 1 VSVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPTAY---PTWSGSISLPASTNVEWKCLKRNETNPTAGVQWQ 77 (97)
T ss_pred CeEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCCCC---CeEEEEEEcCCCCeEEEEEEEEcCCCCcceEEEe
Confidence 46899976 6699999999999999999999999999988654 55999999999999999999987554 346799
Q ss_pred cCCCceEEcCCC
Q 002052 100 MGKKRKLLLHET 111 (975)
Q Consensus 100 ~g~NR~l~l~~~ 111 (975)
.|+||.+.++..
T Consensus 78 ~g~Nr~~~~p~~ 89 (97)
T cd05810 78 GGGNNQLTTGNS 89 (97)
T ss_pred eCCCEEEeCCCC
Confidence 999999999873
No 36
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.59 E-value=4.4e-15 Score=137.87 Aligned_cols=81 Identities=22% Similarity=0.371 Sum_probs=72.3
Q ss_pred eEEEEEEEecccCCCCEEEEEcCccccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEEECCCCCeeEeeCCCe
Q 002052 167 VLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKSGKTGNISLETGANR 246 (975)
Q Consensus 167 v~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~l~~~~~~~eYKyvi~~~~g~v~WE~G~NR 246 (975)
|+|+|+|+++++..||.++|+||+++||+|++ +++|+..+++.|++++++|+. .+|||||++.++++.+.||.|.||
T Consensus 1 v~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~--~~~l~~~~~~~W~~~v~lp~~-~~ieYky~~~~~~~~~~WE~~~nr 77 (95)
T cd05813 1 VNVTFRVHYITHSDAQLVAVTGDHEELGSWHS--YIPLQYVKDGFWSASVSLPVD-THVEWKFVLVENGQVTRWEECSNR 77 (95)
T ss_pred CeEEEEEEeeeCCCCeEEEEEcChHHHCCCCc--cccCcCCCCCCEEEEEEecCC-CcEEEEEEEEcCCCEEEeecCCCe
Confidence 57999999999777899999999999999996 789999999999999999994 589999999876555699999999
Q ss_pred eEEe
Q 002052 247 NLNV 250 (975)
Q Consensus 247 ~~~~ 250 (975)
.+.+
T Consensus 78 ~~~~ 81 (95)
T cd05813 78 LLET 81 (95)
T ss_pred EEEc
Confidence 9883
No 37
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=99.58 E-value=7.6e-15 Score=139.76 Aligned_cols=86 Identities=26% Similarity=0.436 Sum_probs=74.0
Q ss_pred eEEEEEEEecccCCCCEEEEEcCccccCCCCcccccccccc-------CCCcEEEEEeccCCC--CceeeeEEEECCCCC
Q 002052 167 VLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYA-------GESVWEADCVIQRGD--FPIKYKYCKSGKTGN 237 (975)
Q Consensus 167 v~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~~-------~~~~W~~~v~l~~~~--~~~eYKyvi~~~~g~ 237 (975)
+.|||+|.++-+++||+|+|+||+++||+|++++|++|++. ..+.|++++++|++. .+|||||++.+ +|.
T Consensus 1 ~~~~f~~~~~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~~~-~~~ 79 (112)
T cd05806 1 MLFRFGVVLTFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLKRE-AGA 79 (112)
T ss_pred CEEEEEEEEeecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEEeC-CCe
Confidence 36999999866699999999999999999999999999986 446799999999853 68999999988 678
Q ss_pred eeEe---eCCCeeEEecCC
Q 002052 238 ISLE---TGANRNLNVDFS 253 (975)
Q Consensus 238 v~WE---~G~NR~~~~p~~ 253 (975)
+.|| ...||.+.....
T Consensus 80 v~WE~~~~~~nr~~~~~~~ 98 (112)
T cd05806 80 LIWEGNGPHHDRCCVYDSS 98 (112)
T ss_pred eEEecCCCCCCeEEecccc
Confidence 9999 568898776533
No 38
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=99.53 E-value=7.2e-14 Score=133.11 Aligned_cols=86 Identities=23% Similarity=0.508 Sum_probs=71.7
Q ss_pred EEEEEEEEE-ECCCCCEEEEEeccCCcCCCCCCCcccccccCC----CCCccEEEEEEcCCC---ceEEEEEEEEeCCCC
Q 002052 23 LTVKFRIPY-YTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQ----DDELIWSGSIAVPIG---FSCEYSYYVVDDRKN 94 (975)
Q Consensus 23 ~~V~F~V~~-~t~~Gq~L~VvGs~~eLG~W~~~~al~L~~~~~----~~~~~W~~~V~lp~~---~~~eYKYvv~d~~g~ 94 (975)
|+|+|+|.. .+++||+|+|+||+++||+|++++|++|++... +..+.|++++++|.+ ..|||||++++ +|
T Consensus 1 ~~~~f~~~~~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~~~-~~- 78 (112)
T cd05806 1 MLFRFGVVLTFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLKRE-AG- 78 (112)
T ss_pred CEEEEEEEEeecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEEeC-CC-
Confidence 589999998 599999999999999999999999999998632 123569999999985 58999999976 55
Q ss_pred eEEeecC---CCceEEcCC
Q 002052 95 LLRWEMG---KKRKLLLHE 110 (975)
Q Consensus 95 ~i~WE~g---~NR~l~l~~ 110 (975)
.+.||.+ .||++.+..
T Consensus 79 ~v~WE~~~~~~nr~~~~~~ 97 (112)
T cd05806 79 ALIWEGNGPHHDRCCVYDS 97 (112)
T ss_pred eeEEecCCCCCCeEEeccc
Confidence 5569944 499887764
No 39
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.48 E-value=8.9e-14 Score=134.72 Aligned_cols=86 Identities=30% Similarity=0.538 Sum_probs=71.8
Q ss_pred EEEEEEEEE-ECCCCCEEEEEeccCCcCCCCCCCcccccccCCCCCccEEEEEEcCCCceEEEEEEEEeC---CC--CeE
Q 002052 23 LTVKFRIPY-YTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIAVPIGFSCEYSYYVVDD---RK--NLL 96 (975)
Q Consensus 23 ~~V~F~V~~-~t~~Gq~L~VvGs~~eLG~W~~~~al~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv~d~---~g--~~i 96 (975)
+.|+|+|++ .|.+||+|+|+||+++||+|++++|++|++.+. .++.|+++|.+|.+..|+|||++++. .+ +++
T Consensus 1 ~~v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~-~~~~W~~~v~lp~~~~veYkY~~~~~~~~~~~~~~~ 79 (120)
T cd05814 1 CRVTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKEDD-DCNLWKASIELPRGVDFQYRYFVAVVLNDSGPCQVI 79 (120)
T ss_pred CeEEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCCC-cCCccEEEEEECCCCeEEEEEEEEEeccCCCCccEE
Confidence 369999999 599999999999999999999999999998721 12459999999999899999999752 22 455
Q ss_pred --EeecCCC-ceEEcC
Q 002052 97 --RWEMGKK-RKLLLH 109 (975)
Q Consensus 97 --~WE~g~N-R~l~l~ 109 (975)
+||.+.| |.+...
T Consensus 80 ~~~WE~~~~~R~~~~~ 95 (120)
T cd05814 80 VRKWETHLQPRSIKPL 95 (120)
T ss_pred EeeccCCCCccEeccc
Confidence 8999986 666544
No 40
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.45 E-value=1.4e-13 Score=133.28 Aligned_cols=82 Identities=23% Similarity=0.458 Sum_probs=71.4
Q ss_pred EEEEEEEecccCCCCEEEEEcCccccCCCCcccccccccc--CCCcEEEEEeccCCCCceeeeEEEECC----CC-C-e-
Q 002052 168 LVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYA--GESVWEADCVIQRGDFPIKYKYCKSGK----TG-N-I- 238 (975)
Q Consensus 168 ~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~~--~~~~W~~~v~l~~~~~~~eYKyvi~~~----~g-~-v- 238 (975)
.|+|+|+++++.+||+|+|+||+++||+|++.+|++|.+. .++.|++++.+|. +.+|+|||++++. ++ . +
T Consensus 2 ~v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~-~~~veYkY~~~~~~~~~~~~~~~~ 80 (120)
T cd05814 2 RVTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPR-GVDFQYRYFVAVVLNDSGPCQVIV 80 (120)
T ss_pred eEEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECC-CCeEEEEEEEEEeccCCCCccEEE
Confidence 5899999987799999999999999999999999999987 7899999999998 5589999999762 22 2 3
Q ss_pred -eEeeCCC-eeEEe
Q 002052 239 -SLETGAN-RNLNV 250 (975)
Q Consensus 239 -~WE~G~N-R~~~~ 250 (975)
.||.+.| |.+.+
T Consensus 81 ~~WE~~~~~R~~~~ 94 (120)
T cd05814 81 RKWETHLQPRSIKP 94 (120)
T ss_pred eeccCCCCccEecc
Confidence 8999988 66654
No 41
>PLN02950 4-alpha-glucanotransferase
Probab=99.37 E-value=2e-12 Score=161.27 Aligned_cols=91 Identities=30% Similarity=0.491 Sum_probs=81.0
Q ss_pred CCCceEEEEEEEecccCCCCEEEEEcCccccCCCCcccccccccc---CCCcEEEEEeccCCCCceeeeEEEECCCCC-e
Q 002052 163 QEDSVLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYA---GESVWEADCVIQRGDFPIKYKYCKSGKTGN-I 238 (975)
Q Consensus 163 ~~~~v~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~~---~~~~W~~~v~l~~~~~~~eYKyvi~~~~g~-v 238 (975)
++..+.|+|++.+.| .+||+|+|+||+++||+|++++|++|++. +++.|+++|++|. +..|||||++++.+|+ +
T Consensus 5 ~~~~V~V~F~i~y~T-~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~-~~~ieYKYv~v~~~g~vi 82 (909)
T PLN02950 5 SLKSVTLSFRIPYYT-QWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPE-GFSCEYSYYVVDDNKNVL 82 (909)
T ss_pred CCCcEEEEEEeEEec-CCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecC-CCeEEEEEEEEeCCCcee
Confidence 356699999999977 99999999999999999999999999765 5679999999998 6789999999988787 5
Q ss_pred eEeeCCCeeEEecCCCC
Q 002052 239 SLETGANRNLNVDFSNN 255 (975)
Q Consensus 239 ~WE~G~NR~~~~p~~~~ 255 (975)
.||.|+||.+.+|..+.
T Consensus 83 ~WE~g~NR~l~lp~~~~ 99 (909)
T PLN02950 83 RWEAGKKRKLVLPEGLQ 99 (909)
T ss_pred eeecCCCeeEECCcccC
Confidence 89999999999987543
No 42
>PRK05402 glycogen branching enzyme; Provisional
Probab=98.16 E-value=0.00029 Score=88.13 Aligned_cols=272 Identities=16% Similarity=0.147 Sum_probs=150.4
Q ss_pred EEEEEEEEEECCCCCEEEEEeccCCcCCCCCCCcccccccCCCCCccEEEEEEcCCCceEEEEEEEEeCCCCeEEeecCC
Q 002052 23 LTVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIAVPIGFSCEYSYYVVDDRKNLLRWEMGK 102 (975)
Q Consensus 23 ~~V~F~V~~~t~~Gq~L~VvGs~~eLG~W~~~~al~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv~d~~g~~i~WE~g~ 102 (975)
..++|+|=++.. ++|.|+|+-. + .+..+|+..+. ..+|++.|.+ ...-.|||.|.+ +|+.+ +...
T Consensus 28 ~g~~f~vwaP~A--~~V~vvgdfn-----~-~~~~~m~~~~~--~G~w~~~ip~--~~g~~YKy~i~~-~g~~~--~k~D 92 (726)
T PRK05402 28 AGLVVRALLPGA--EEVWVILPGG-----G-RKLAELERLHP--RGLFAGVLPR--KGPFDYRLRVTW-GGGEQ--LIDD 92 (726)
T ss_pred CcEEEEEECCCC--eEEEEEeecC-----C-CccccceEcCC--CceEEEEecC--CCCCCeEEEEEe-CCcee--Eecc
Confidence 368888876622 5899999764 1 45668886432 2569988873 334569999987 77643 1111
Q ss_pred CceEEcCCCCCCCceEEEeccccccccCCCCcccchhhhhcccccccccccccccccccCCCCceEEEEEEEecccCCCC
Q 002052 103 KRKLLLHETIKDGEVVELHDLWQTGGDALPFRSAFKNVIFRRSFSLDIERSDGLIQNKLEQEDSVLVRFKICIPNIEEDA 182 (975)
Q Consensus 103 NR~l~l~~~~~~g~~v~v~D~W~~~~~~~~~ssaF~~vi~~~~~~~~~~~~~~~~~~~~~~~~~v~V~F~v~~~~~~~Ge 182 (975)
+--... .+ .......+.+-... ...+.+|+-+... .+...|+|+|-+|. -+
T Consensus 93 Pyaf~~----------~~----~~~~~~~~~~g~~~----------~~~~~LGah~~~~--~~~~gv~FrvwAP~---A~ 143 (726)
T PRK05402 93 PYRFGP----------LL----GELDLYLFGEGTHL----------RLYETLGAHPVTV--DGVSGVRFAVWAPN---AR 143 (726)
T ss_pred ccccCC----------CC----CHHHHHHHhCCccc----------hhhhccccEEecc--CCCCcEEEEEECCC---CC
Confidence 111000 00 00000001110000 0112223211000 11235899999987 89
Q ss_pred EEEEEcCccccCCCCcccccccccc-CCCcEEEEEe-ccCCCCceeeeEEEECCCCCeeEeeCCCeeEEecCCCCCCceE
Q 002052 183 SVYVIGSTSMLGQWKLQNGLKLSYA-GESVWEADCV-IQRGDFPIKYKYCKSGKTGNISLETGANRNLNVDFSNNQPRYI 260 (975)
Q Consensus 183 ~v~IvGs~~eLG~W~~~~av~L~~~-~~~~W~~~v~-l~~~~~~~eYKyvi~~~~g~v~WE~G~NR~~~~p~~~~~p~~~ 260 (975)
+|.|+|+- .+|+.. ..+|... ....|++.|. ++. .-.|||.+...+|.+..-..+=. ..++......+ +
T Consensus 144 ~V~l~gdf---n~w~~~-~~~m~~~~~~Gvw~~~i~~~~~---g~~Y~y~v~~~~g~~~~~~DPYa-~~~~~~~~~~s-~ 214 (726)
T PRK05402 144 RVSVVGDF---NGWDGR-RHPMRLRGESGVWELFIPGLGE---GELYKFEILTADGELLLKADPYA-FAAEVRPATAS-I 214 (726)
T ss_pred EEEEEEEc---CCCCCc-cccceEcCCCCEEEEEeCCCCC---CCEEEEEEeCCCCcEeecCCCce-EEEecCCCCcE-E
Confidence 99999843 467643 4578776 7789998885 232 34899999876665433223322 22221111122 2
Q ss_pred eecccccc--CCC---------Ccc---eEEeeecCccCCC-CCCcccCHHH-HHHHHHHHHHcCCCEEEEcCCCCCCCC
Q 002052 261 FLSDGMMR--EMP---------WRG---AGVAVPMFSVRSE-ADLGVGEFLD-LKLLVDWAVESGFHLVQLLPINDTSVN 324 (975)
Q Consensus 261 ~~~~~~~~--~~~---------~R~---~Gv~~~l~SLrs~-~~~GiGdf~d-l~~~~d~~~~~G~~~~QilPl~~t~~~ 324 (975)
+.+...+. +.. .+. .--=+|+-+.-.. .+-++|+|.+ +.++++++++.|.+.|+|+|+..-...
T Consensus 215 v~d~~~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~ 294 (726)
T PRK05402 215 VADLSQYQWNDAAWMEKRAKRNPLDAPISIYEVHLGSWRRHEDGGRFLSYRELADQLIPYVKEMGFTHVELLPIAEHPFD 294 (726)
T ss_pred EeCCccCCCCCcchhhcccccCcccCCcEEEEEehhhhccCCCCCcccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCC
Confidence 22211110 000 111 1223455555432 3335899987 446679999999999999999653211
Q ss_pred CCCCCCCCCCcCCccccCccccChhhh
Q 002052 325 RMWWDSYPYSSLSVFALHPLYLRVQAL 351 (975)
Q Consensus 325 ~~~~~~SPYs~~S~falNPlyI~l~~l 351 (975)
.+--|.+..=|+.+|-|-.++++
T Consensus 295 ----~~~GY~~~~y~ai~~~~Gt~~df 317 (726)
T PRK05402 295 ----GSWGYQPTGYYAPTSRFGTPDDF 317 (726)
T ss_pred ----CCCCCCcccCCCcCcccCCHHHH
Confidence 12369999999999999887765
No 43
>PRK14705 glycogen branching enzyme; Provisional
Probab=97.59 E-value=0.0072 Score=78.57 Aligned_cols=136 Identities=21% Similarity=0.239 Sum_probs=79.7
Q ss_pred eEEEEEEEecccCCCCEEEEEcCccccCCCCccccccccc-cCCCcEEEEEe-ccCCCCceeeeEEEECCCCCeeEeeCC
Q 002052 167 VLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSY-AGESVWEADCV-IQRGDFPIKYKYCKSGKTGNISLETGA 244 (975)
Q Consensus 167 v~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~-~~~~~W~~~v~-l~~~~~~~eYKyvi~~~~g~v~WE~G~ 244 (975)
..|+|.|-+|. -++|.|+|+- -+|+... .+|.. .....|++.|. +.. --.|||.+...+|....-..|
T Consensus 638 ~Gv~F~VWAP~---A~~V~vvgdF---N~w~~~~-~~m~~~~~~GvW~~fipg~~~---G~~Yky~i~~~~g~~~~k~DP 707 (1224)
T PRK14705 638 DGVSFAVWAPN---AQAVRVKGDF---NGWDGRE-HSMRSLGSSGVWELFIPGVVA---GACYKFEILTKAGQWVEKADP 707 (1224)
T ss_pred CeEEEEEECCC---CCEEEEEEEe---cCCCCCc-ccceECCCCCEEEEEECCCCC---CCEEEEEEEcCCCcEEecCCc
Confidence 45999999998 8999999965 3787643 46765 45679998875 333 348999998866653221111
Q ss_pred C-eeEEecCCCCCCceEeeccc-------cccCC---CCcceE---EeeecCccCCCCCCcccCHHH-HHHHHHHHHHcC
Q 002052 245 N-RNLNVDFSNNQPRYIFLSDG-------MMREM---PWRGAG---VAVPMFSVRSEADLGVGEFLD-LKLLVDWAVESG 309 (975)
Q Consensus 245 N-R~~~~p~~~~~p~~~~~~~~-------~~~~~---~~R~~G---v~~~l~SLrs~~~~GiGdf~d-l~~~~d~~~~~G 309 (975)
= +....++.. .+ ++.+.. +.... ..+... -=+|+.|... + |.|.+ +.++++++++.|
T Consensus 708 yA~~~e~~p~~--aS-~V~d~~~~w~d~~W~~~r~~~~~~~~p~~IYEvHvgsf~~----~-~~~~~l~~~lldYlk~LG 779 (1224)
T PRK14705 708 LAFGTEVPPLT--AS-RVVEASYAFKDAEWMSARAERDPHNSPMSVYEVHLGSWRL----G-LGYRELAKELVDYVKWLG 779 (1224)
T ss_pred cccccccCCCC--Ce-EEeCCCCCcCChhhhhccccCCCCcCCcEEEEEEeccccc----C-CchHHHHHHHHHHHHHhC
Confidence 0 111111111 11 222211 11000 001111 1245555433 2 46776 457899999999
Q ss_pred CCEEEEcCCCC
Q 002052 310 FHLVQLLPIND 320 (975)
Q Consensus 310 ~~~~QilPl~~ 320 (975)
.+.|+|+||..
T Consensus 780 vt~IeLmPv~e 790 (1224)
T PRK14705 780 FTHVEFMPVAE 790 (1224)
T ss_pred CCEEEECcccc
Confidence 99999999953
No 44
>PRK12313 glycogen branching enzyme; Provisional
Probab=97.28 E-value=0.0066 Score=75.04 Aligned_cols=171 Identities=19% Similarity=0.251 Sum_probs=104.3
Q ss_pred eEEEEEEEecccCCCCEEEEEcCccccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEEECCCCCeeEeeCCCe
Q 002052 167 VLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKSGKTGNISLETGANR 246 (975)
Q Consensus 167 v~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~l~~~~~~~eYKyvi~~~~g~v~WE~G~NR 246 (975)
..|+|+|-+|. -++|.|+|+- .+|++. ..+|.......|++.+.-.. ..-.|||.+...+|....-..+-
T Consensus 38 ~gv~Frv~AP~---A~~V~v~gdf---n~w~~~-~~~m~~~~~Gvw~~~i~~~~--~g~~Y~y~v~~~~g~~~~~~DPy- 107 (633)
T PRK12313 38 KGTYFRVWAPN---AQAVSVVGDF---NDWRGN-AHPLVRRESGVWEGFIPGAK--EGQLYKYHISRQDGYQVEKIDPF- 107 (633)
T ss_pred ccEEEEEECCC---CCEEEEEEec---CCCCcc-cccccccCCCEEEEEeCCCC--CCCEEEEEEECCCCeEEecCCCc-
Confidence 36999999987 8999999853 578754 46788777889999987322 24589999966555432222222
Q ss_pred eEEecCCCCCCceEeecccccc--CCCC----------cceEE--eeecCccCCCCCCcccCHHHHH-HHHHHHHHcCCC
Q 002052 247 NLNVDFSNNQPRYIFLSDGMMR--EMPW----------RGAGV--AVPMFSVRSEADLGVGEFLDLK-LLVDWAVESGFH 311 (975)
Q Consensus 247 ~~~~p~~~~~p~~~~~~~~~~~--~~~~----------R~~Gv--~~~l~SLrs~~~~GiGdf~dl~-~~~d~~~~~G~~ 311 (975)
...++......+ ++.+...+. ...| +.--| =+|+-|.-...+-|.|+|.++. +++|.+++.|.+
T Consensus 108 a~~~~~~~~~~s-~v~d~~~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~~~g~~~~~~~~ll~yl~~LGv~ 186 (633)
T PRK12313 108 AFYFEARPGTAS-IVWDLPEYKWKDGLWLARRKRWNALDRPISIYEVHLGSWKRNEDGRPLSYRELADELIPYVKEMGYT 186 (633)
T ss_pred eEEEecCCCCce-EECCCcccCCCChhhhhccccCCCCCCCceEEEEehhccccCCCCCccCHHHHHHHHHHHHHHcCCC
Confidence 222211111122 222221111 1000 01112 2444554333334689998844 678999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCCcCCccccCccccChhhhc
Q 002052 312 LVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQALS 352 (975)
Q Consensus 312 ~~QilPl~~t~~~~~~~~~SPYs~~S~falNPlyI~l~~l~ 352 (975)
.|+|+||...-.. .+-.|.+..=|+.+|-|-.++++.
T Consensus 187 ~i~L~Pi~~~~~~----~~~GY~~~~y~~i~~~~Gt~~d~k 223 (633)
T PRK12313 187 HVEFMPLMEHPLD----GSWGYQLTGYFAPTSRYGTPEDFM 223 (633)
T ss_pred EEEeCchhcCCCC----CCCCCCCcCcCcCCCCCCCHHHHH
Confidence 9999999653211 123788888899999998877653
No 45
>PRK12568 glycogen branching enzyme; Provisional
Probab=96.88 E-value=0.023 Score=70.57 Aligned_cols=167 Identities=20% Similarity=0.297 Sum_probs=101.2
Q ss_pred EEEEEEEecccCCCCEEEEEcCccccCCCCccccccccccCCCcEEEEEe-ccCCCCceeeeEEEECCCCCeeEeeCCC-
Q 002052 168 LVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCV-IQRGDFPIKYKYCKSGKTGNISLETGAN- 245 (975)
Q Consensus 168 ~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~-l~~~~~~~eYKyvi~~~~g~v~WE~G~N- 245 (975)
-|+|.|-+|. .++|.|+|+- -+|+.. ..+|....+..|++.|. +.. --.|||.+...+|.+..-..|-
T Consensus 139 Gv~FaVWAPn---A~~VsVvGDF---N~Wdg~-~~pM~~~~~GVWelfipg~~~---G~~YKYeI~~~~G~~~~k~DPYA 208 (730)
T PRK12568 139 GVRFAVWAPH---AQRVAVVGDF---NGWDVR-RHPMRQRIGGFWELFLPRVEA---GARYKYAITAADGRVLLKADPVA 208 (730)
T ss_pred cEEEEEECCC---CCEEEEEEec---CCCCcc-ceecccCCCCEEEEEECCCCC---CCEEEEEEEcCCCeEeecCCCcc
Confidence 5999999997 8999999975 478754 46787667889999885 333 3589999987666543212221
Q ss_pred eeEEecCCCCCCceEeec--------cccccC--CCCc---ceEEeeecCccCCCCCCcccCHHHH-HHHHHHHHHcCCC
Q 002052 246 RNLNVDFSNNQPRYIFLS--------DGMMRE--MPWR---GAGVAVPMFSVRSEADLGVGEFLDL-KLLVDWAVESGFH 311 (975)
Q Consensus 246 R~~~~p~~~~~p~~~~~~--------~~~~~~--~~~R---~~Gv~~~l~SLrs~~~~GiGdf~dl-~~~~d~~~~~G~~ 311 (975)
|.+..++.. .+ ++.. +.+... ...+ ..===|||-|.+...+-+.++|..+ .++++++++.|.+
T Consensus 209 ~~~e~~p~~--as-vV~~~~~~~W~d~~W~~~r~~~~~~~~~~IYEvHvgsf~~~~~~~~~~~~~la~~ll~ylk~LGvt 285 (730)
T PRK12568 209 RQTELPPAT--AS-VVPSAAAFAWTDAAWMARRDPAAVPAPLSIYEVHAASWRRDGHNQPLDWPTLAEQLIPYVQQLGFT 285 (730)
T ss_pred eEeecCCCC--Ce-EEcCCCCCCCCChhhhhcccccCCCCCcEEEEEEhHHhcCCCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 122221111 11 1111 111100 0000 1112256677665444357799874 5678999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCCcCCccccCccccChhhh
Q 002052 312 LVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQAL 351 (975)
Q Consensus 312 ~~QilPl~~t~~~~~~~~~SPYs~~S~falNPlyI~l~~l 351 (975)
.|+|+|+....... +-=|++..-|+.+|-|=.++++
T Consensus 286 ~I~LmPi~e~~~~~----~wGY~~~~~~a~~~~~G~~~df 321 (730)
T PRK12568 286 HIELLPITEHPFGG----SWGYQPLGLYAPTARHGSPDGF 321 (730)
T ss_pred EEEECccccCCCCC----CCCCCCCcCCccCcccCCHHHH
Confidence 99999996432111 1246677777777777766544
No 46
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=96.72 E-value=0.038 Score=68.92 Aligned_cols=171 Identities=15% Similarity=0.134 Sum_probs=100.6
Q ss_pred EEEEEEEecccCCCCEEEEEcCccccCCCCccccccccccCCCcEEEEEec----cCCCCceeeeEEEECCCCCeeEeeC
Q 002052 168 LVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVI----QRGDFPIKYKYCKSGKTGNISLETG 243 (975)
Q Consensus 168 ~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~l----~~~~~~~eYKyvi~~~~g~v~WE~G 243 (975)
.++|+|=+|. -++|.|+|+-. +|+.. ..+|...+...|++.|.- ++..---.|||.+...+|....-..
T Consensus 115 g~~FrvWAP~---A~~V~LvGdFN---~W~~~-~~~M~~~~~GvWe~~ip~~~g~~~~~~G~~Yky~i~~~~g~~~~r~d 187 (758)
T PLN02447 115 GITYREWAPG---AKAAALIGDFN---NWNPN-AHWMTKNEFGVWEIFLPDADGSPAIPHGSRVKIRMETPDGRWVDRIP 187 (758)
T ss_pred CEEEEEECCC---CCEEEEEEecC---CCCCC-ccCceeCCCCEEEEEECCccccccCCCCCEEEEEEEeCCCcEEeecC
Confidence 5899999997 78999999764 89753 468888888999998863 0011134799999887664322111
Q ss_pred C--CeeEEecCCC-CCCceEeeccc------cccCCCCcceEEe---eecCccCCCCCCcccCHHH-HHHHHHHHHHcCC
Q 002052 244 A--NRNLNVDFSN-NQPRYIFLSDG------MMREMPWRGAGVA---VPMFSVRSEADLGVGEFLD-LKLLVDWAVESGF 310 (975)
Q Consensus 244 ~--NR~~~~p~~~-~~p~~~~~~~~------~~~~~~~R~~Gv~---~~l~SLrs~~~~GiGdf~d-l~~~~d~~~~~G~ 310 (975)
+ -+....|... ....-++.+.. +....+.+...+. +|+-+-... -++|.|.+ +.+.++.+++.|.
T Consensus 188 pya~~~~~~p~~~~~~~~svv~dp~~~~~y~w~~~~~~~~~~~~IYE~Hvg~~~~~--~~~gty~~~~~~~L~ylk~LG~ 265 (758)
T PLN02447 188 AWIKYAVQAPGEIGAPYNGVYWDPPEEEKYVFKHPRPPRPAALRIYEAHVGMSSEE--PKVNSYREFADDVLPRIKALGY 265 (758)
T ss_pred chHheeeccCCccCCCCceEEeCCCCCCCCCCCCCCCCCCCCCEEEEEeCCcccCC--CCCCCHHHHHHHHHHHHHHcCC
Confidence 1 0111112110 00111222211 1111111111211 233222111 14789987 4678999999999
Q ss_pred CEEEEcCCCCCCCCCCCCCCCCCCcCCccccCccccChhhh
Q 002052 311 HLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQAL 351 (975)
Q Consensus 311 ~~~QilPl~~t~~~~~~~~~SPYs~~S~falNPlyI~l~~l 351 (975)
+.|||+||..-.... +--|.+..-|+.+|-|-++++|
T Consensus 266 t~I~LmPi~e~~~~~----~wGY~~~~~fa~~~~~Gtp~dl 302 (758)
T PLN02447 266 NAVQLMAIQEHAYYG----SFGYHVTNFFAVSSRSGTPEDL 302 (758)
T ss_pred CEEEECCccccCCCC----CCCcCcccCcccccccCCHHHH
Confidence 999999998754222 2358888888888887665543
No 47
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=96.63 E-value=0.033 Score=67.96 Aligned_cols=158 Identities=19% Similarity=0.286 Sum_probs=94.4
Q ss_pred eEEEEEEEecccCCCCEEEEEcCccccCCCCccccccccc-cCCCcEEEEEe-ccCCCCceeeeEEEECCCCCeeEeeCC
Q 002052 167 VLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSY-AGESVWEADCV-IQRGDFPIKYKYCKSGKTGNISLETGA 244 (975)
Q Consensus 167 v~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~-~~~~~W~~~v~-l~~~~~~~eYKyvi~~~~g~v~WE~G~ 244 (975)
..|+|.|=+|. -++|.|+|+-. +|+.-. .+|.. .+...|++.|. +++ + -.|||.+.+.+|.+.+-..|
T Consensus 36 ~~~~F~vWAP~---a~~V~vvgdfn---~w~~~~-~~~~~~~~~G~we~~vp~~~~-G--~~Yky~l~~~~g~~~~~~DP 105 (628)
T COG0296 36 SGVRFRVWAPN---ARRVSLVGDFN---DWDGRR-MPMRDRKESGIWELFVPGAPP-G--TRYKYELIDPSGQLRLKADP 105 (628)
T ss_pred CceEEEEECCC---CCeEEEEeecC---Ccccee-cccccCCCCceEEEeccCCCC-C--CeEEEEEeCCCCceeeccCc
Confidence 45999999987 78999999865 455321 12221 25589999998 787 3 48999999988855444442
Q ss_pred C-eeEEecCCCCCCceEeecc--------ccccC-CCCcceEEe---eecCccCCCCCCcccCHHHHHHHHHHHHHcCCC
Q 002052 245 N-RNLNVDFSNNQPRYIFLSD--------GMMRE-MPWRGAGVA---VPMFSVRSEADLGVGEFLDLKLLVDWAVESGFH 311 (975)
Q Consensus 245 N-R~~~~p~~~~~p~~~~~~~--------~~~~~-~~~R~~Gv~---~~l~SLrs~~~~GiGdf~dl~~~~d~~~~~G~~ 311 (975)
= |....++.. ++ ++.+. .+.+. ...+...+. |||.|-+.. ...|.|.-+.+++++++++|.+
T Consensus 106 ~a~~~~~~p~~--aS-~v~~~~~y~W~d~~~~~~~~~~~~e~~vIYElHvGs~~~~--~~~~~~e~a~~llpYl~elG~T 180 (628)
T COG0296 106 YARRQEVGPHT--AS-QVVDLPDYEWQDERWDRAWRGRFWEPIVIYELHVGSFTPD--RFLGYFELAIELLPYLKELGIT 180 (628)
T ss_pred hhhccCCCCCC--cc-eecCCCCcccccccccccccCCCCCCceEEEEEeeeccCC--CCcCHHHHHHHHhHHHHHhCCC
Confidence 2 111111111 11 11111 11111 001112222 566666552 4577888899999999999999
Q ss_pred EEEEcCCCCCCCCCCCC--CCCCCCcCCcc
Q 002052 312 LVQLLPINDTSVNRMWW--DSYPYSSLSVF 339 (975)
Q Consensus 312 ~~QilPl~~t~~~~~~~--~~SPYs~~S~f 339 (975)
.|+|+||..--....|. ...+|+|.|+|
T Consensus 181 ~IELMPv~e~p~~~sWGYq~~g~yAp~sry 210 (628)
T COG0296 181 HIELMPVAEHPGDRSWGYQGTGYYAPTSRY 210 (628)
T ss_pred EEEEcccccCCCCCCCCCCcceeccccccC
Confidence 99999997643222221 12356665554
No 48
>PRK14706 glycogen branching enzyme; Provisional
Probab=96.53 E-value=0.073 Score=65.82 Aligned_cols=168 Identities=20% Similarity=0.263 Sum_probs=98.9
Q ss_pred EEEEEEEecccCCCCEEEEEcCccccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEEECCCCCeeEeeCCC-e
Q 002052 168 LVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKSGKTGNISLETGAN-R 246 (975)
Q Consensus 168 ~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~l~~~~~~~eYKyvi~~~~g~v~WE~G~N-R 246 (975)
.|+|+|-+|. -++|.|+|+-. +|+. ...+|...+...|++.|.-... --.|||.+...+|....-..|= |
T Consensus 39 Gv~FrvwAP~---A~~V~Lvgdfn---~w~~-~~~pM~~~~~GvW~~~vpg~~~--g~~Yky~I~~~~g~~~~~~DPYa~ 109 (639)
T PRK14706 39 GVRFAVWAPG---AQHVSVVGDFN---DWNG-FDHPMQRLDFGFWGAFVPGARP--GQRYKFRVTGAAGQTVDKMDPYGS 109 (639)
T ss_pred cEEEEEECCC---CCEEEEEEecC---Cccc-ccccccccCCCEEEEEECCCCC--CCEEEEEEECCCCCEEeccCcceE
Confidence 4899999987 88999998643 6864 3467877777899988853221 2489999987655432211211 1
Q ss_pred eEEecCCCCCCceEeecccc-ccCCCC---cce---E-E---eeecCccCCCCCCcccCHHH-HHHHHHHHHHcCCCEEE
Q 002052 247 NLNVDFSNNQPRYIFLSDGM-MREMPW---RGA---G-V---AVPMFSVRSEADLGVGEFLD-LKLLVDWAVESGFHLVQ 314 (975)
Q Consensus 247 ~~~~p~~~~~p~~~~~~~~~-~~~~~~---R~~---G-v---~~~l~SLrs~~~~GiGdf~d-l~~~~d~~~~~G~~~~Q 314 (975)
.+...+ ..++ ++....+ ..+..| |.. . + =+||-+.....+-..|.|.+ +.++++++++.|.+.||
T Consensus 110 ~~~~~~--~~~s-vv~~~~~~w~d~~w~~~~~~~~~~~~~IYE~Hvg~f~~~~~g~~~ty~~~~~~l~~ylk~lG~t~ve 186 (639)
T PRK14706 110 FFEVRP--NTAS-IIWEDRFEWTDTRWMSSRTAGFDQPISIYEVHVGSWARRDDGWFLNYRELAHRLGEYVTYMGYTHVE 186 (639)
T ss_pred EEecCC--CCce-EECCCCCCCCCcccccccCCccCCCcEEEEEehhhcccCCCCCccCHHHHHHHHHHHHHHcCCCEEE
Confidence 122211 1122 2211111 001111 110 0 1 14555554332212678875 56678999999999999
Q ss_pred EcCCCCCCCCCCCCCCCCCCcCCccccCccccChhhh
Q 002052 315 LLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQAL 351 (975)
Q Consensus 315 ilPl~~t~~~~~~~~~SPYs~~S~falNPlyI~l~~l 351 (975)
|+|+....... +--|.+..=|+.++-|-.++++
T Consensus 187 lmPv~e~~~~~----~wGY~~~~~~~~~~~~g~~~~~ 219 (639)
T PRK14706 187 LLGVMEHPFDG----SWGYQVTGYYAPTSRLGTPEDF 219 (639)
T ss_pred ccchhcCCCCC----CCCcCcccccccccccCCHHHH
Confidence 99997632111 2357777778888888766554
No 49
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=96.38 E-value=0.011 Score=53.20 Aligned_cols=53 Identities=25% Similarity=0.488 Sum_probs=44.0
Q ss_pred EEEEEEEEEECCCCCEEEEEeccCCcCCCCCCCcccccccCCCCCccEEEEEEcCCCceEEEEEEE
Q 002052 23 LTVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIAVPIGFSCEYSYYV 88 (975)
Q Consensus 23 ~~V~F~V~~~t~~Gq~L~VvGs~~eLG~W~~~~al~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv 88 (975)
++|+|+..+ .+++|+|+||- -+|++ .++|....+. |++++.||.+ ..+|||+|
T Consensus 2 ~~v~f~~~~---~a~~V~v~G~F---~~W~~--~~pm~~~~~~----~~~~~~L~~g-~y~YkF~V 54 (79)
T cd02859 2 VPTTFVWPG---GGKEVYVTGSF---DNWKK--KIPLEKSGKG----FSATLRLPPG-KYQYKFIV 54 (79)
T ss_pred eEEEEEEcC---CCcEEEEEEEc---CCCCc--cccceECCCC----cEEEEEcCCC-CEEEEEEE
Confidence 568888776 68999999976 67976 6899986643 9999999986 79999998
No 50
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.24 E-value=0.013 Score=53.01 Aligned_cols=54 Identities=26% Similarity=0.543 Sum_probs=44.5
Q ss_pred eEEEEEEEecccCCCCEEEEEcCccccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEE
Q 002052 167 VLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCK 231 (975)
Q Consensus 167 v~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~l~~~~~~~eYKyvi 231 (975)
++|+|++.++. .++|+|+|+- -+|+ ..+|...+...|++++.+++ +. .+|||++
T Consensus 2 ~~vtf~~~ap~---a~~V~v~G~f---n~W~---~~~m~~~~~G~w~~~~~l~~-G~-y~Ykf~v 55 (82)
T cd02861 2 VPVVFAYRGPE---ADSVYLAGSF---NNWN---AIPMEREGDGLWVVTVELRP-GR-YEYKFVV 55 (82)
T ss_pred ccEEEEEECCC---CCEEEEEeEC---CCCC---cccCEECCCCcEEEEEeCCC-Cc-EEEEEEE
Confidence 57999999885 4999999975 4687 46888877789999999987 43 7999998
No 51
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.23 E-value=0.015 Score=52.54 Aligned_cols=54 Identities=20% Similarity=0.370 Sum_probs=42.4
Q ss_pred EEEEEEEEEECCCCCEEEEEeccCCcCCCCCCCcccccccCCCCCccEEEEEEcCCCceEEEEEEE
Q 002052 23 LTVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIAVPIGFSCEYSYYV 88 (975)
Q Consensus 23 ~~V~F~V~~~t~~Gq~L~VvGs~~eLG~W~~~~al~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv 88 (975)
++|+|++..+.. ++|+|+|+- .+|+ ..+|+..+.+. |++++.++.+. .+|||+|
T Consensus 2 ~~vtf~~~ap~a--~~V~v~G~f---n~W~---~~~m~~~~~G~---w~~~~~l~~G~-y~Ykf~v 55 (82)
T cd02861 2 VPVVFAYRGPEA--DSVYLAGSF---NNWN---AIPMEREGDGL---WVVTVELRPGR-YEYKFVV 55 (82)
T ss_pred ccEEEEEECCCC--CEEEEEeEC---CCCC---cccCEECCCCc---EEEEEeCCCCc-EEEEEEE
Confidence 467888886632 899999975 5786 57888765444 99999998865 8999998
No 52
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=96.16 E-value=0.024 Score=51.17 Aligned_cols=62 Identities=24% Similarity=0.389 Sum_probs=48.4
Q ss_pred eEEEEEEEecccCCCCEEEEEcCccccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEEECCCCCeeEeeCCC
Q 002052 167 VLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKSGKTGNISLETGAN 245 (975)
Q Consensus 167 v~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~l~~~~~~~eYKyvi~~~~g~v~WE~G~N 245 (975)
++|+|+..+ .+++|+|+||- -+|++ .++|...... |++.+.||+ + ..+|||++ +| .|...++
T Consensus 2 ~~v~f~~~~----~a~~V~v~G~F---~~W~~--~~pm~~~~~~-~~~~~~L~~-g-~y~YkF~V---dg--~w~~d~~ 63 (79)
T cd02859 2 VPTTFVWPG----GGKEVYVTGSF---DNWKK--KIPLEKSGKG-FSATLRLPP-G-KYQYKFIV---DG--EWRHSPD 63 (79)
T ss_pred eEEEEEEcC----CCcEEEEEEEc---CCCCc--cccceECCCC-cEEEEEcCC-C-CEEEEEEE---CC--EEEeCCC
Confidence 678999887 38999999965 47986 5788876655 999999998 4 68999998 34 4765543
No 53
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.06 E-value=0.23 Score=61.41 Aligned_cols=164 Identities=19% Similarity=0.276 Sum_probs=97.0
Q ss_pred EEEEEEEecccCCCCEEEEEcCccccCCCCccccccccccC-CCcEEEEEeccCCCCceeeeEEEECCCCCeeEeeCCCe
Q 002052 168 LVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAG-ESVWEADCVIQRGDFPIKYKYCKSGKTGNISLETGANR 246 (975)
Q Consensus 168 ~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~~~-~~~W~~~v~l~~~~~~~eYKyvi~~~~g~v~WE~G~NR 246 (975)
.++|+|-+|. -++|.|+|+- .+|+. ...+|.... ...|++.+.-.. ..-.|||.+...+|....-..|=
T Consensus 29 g~~FrvwAP~---A~~V~L~~df---n~w~~-~~~~m~~~~~~Gvw~~~i~~~~--~g~~Y~y~v~~~~g~~~~~~DPY- 98 (613)
T TIGR01515 29 GTRFCVWAPN---AREVRVAGDF---NYWDG-REHPMRRRNDNGIWELFIPGIG--EGELYKYEIVTNNGEIRLKADPY- 98 (613)
T ss_pred cEEEEEECCC---CCEEEEEEec---CCCCC-ceecceEecCCCEEEEEeCCCC--CCCEEEEEEECCCCcEEEeCCCC-
Confidence 5899999987 7999999854 46764 345787653 679998875221 13489999987655542222222
Q ss_pred eEEecCCCCCCceEeecccccc--CCCC---c------c---eEEeeecCccCCCCCCcccCHHH-HHHHHHHHHHcCCC
Q 002052 247 NLNVDFSNNQPRYIFLSDGMMR--EMPW---R------G---AGVAVPMFSVRSEADLGVGEFLD-LKLLVDWAVESGFH 311 (975)
Q Consensus 247 ~~~~p~~~~~p~~~~~~~~~~~--~~~~---R------~---~Gv~~~l~SLrs~~~~GiGdf~d-l~~~~d~~~~~G~~ 311 (975)
...++.....++ ++++...+. +..| | . .=--+|+.+... -|+|.+ +.+++|.+++.|.+
T Consensus 99 A~~~~~~~~~~s-~v~d~~~~~w~~~~w~~~~~~~~~~~~~~~iYe~hv~~~~~-----~g~~~~i~~~l~dyl~~LGvt 172 (613)
T TIGR01515 99 AFYAEVRPNTAS-LVYDLEGYSWQDQKWQEKRKAKTPYEKPVSIYELHLGSWRH-----GLSYRELADQLIPYVKELGFT 172 (613)
T ss_pred EeeeccCCCCcE-EEECCccCccCchhhhhcccccCcccCCceEEEEehhhccC-----CCCHHHHHHHHHHHHHHcCCC
Confidence 222221111122 223211110 0001 0 1 111344444432 179987 45567999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCCcCCccccCccccChhhh
Q 002052 312 LVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQAL 351 (975)
Q Consensus 312 ~~QilPl~~t~~~~~~~~~SPYs~~S~falNPlyI~l~~l 351 (975)
.|+|+|+...... .+--|.+..=|+.+|-|=+++++
T Consensus 173 ~i~L~Pi~e~~~~----~~wGY~~~~y~~~~~~~Gt~~dl 208 (613)
T TIGR01515 173 HIELLPVAEHPFD----GSWGYQVTGYYAPTSRFGTPDDF 208 (613)
T ss_pred EEEECCcccCCCC----CCCCCCcccCcccccccCCHHHH
Confidence 9999999764321 12368888888888888776554
No 54
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=95.88 E-value=0.14 Score=62.45 Aligned_cols=154 Identities=18% Similarity=0.254 Sum_probs=90.5
Q ss_pred EEEEEEecccCCCCEEEEEcCccccCCCCccccccccccCCCcEEEEEe-ccCCCCceeeeEEEECCCCCeeEeeCCCee
Q 002052 169 VRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCV-IQRGDFPIKYKYCKSGKTGNISLETGANRN 247 (975)
Q Consensus 169 V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~-l~~~~~~~eYKyvi~~~~g~v~WE~G~NR~ 247 (975)
|+|+|-+|. -++|.|+++ + +.++|...+...|++.|. +.. + ..|+|.+.+ ...--.--+|.
T Consensus 1 v~FrlwAP~---A~~V~L~l~------~---~~~~m~k~~~GvW~~~v~~~~~-G--~~Y~y~v~g---~~~v~DPya~~ 62 (542)
T TIGR02402 1 VRFRLWAPT---AASVKLRLN------G---ALHAMQRLGDGWFEITVPPVGP-G--DRYGYVLDD---GTPVPDPASRR 62 (542)
T ss_pred CEEEEECCC---CCEEEEEeC------C---CEEeCeECCCCEEEEEECCCCC-C--CEEEEEEee---eEEecCccccc
Confidence 579999987 788998862 2 257888888899999997 333 3 489998843 10000001111
Q ss_pred EEecCCCCCCceEeecccc-ccCCCC----cceEEe--eecCccCCCCCCcccCHHHHHHHHHHHHHcCCCEEEEcCCCC
Q 002052 248 LNVDFSNNQPRYIFLSDGM-MREMPW----RGAGVA--VPMFSVRSEADLGVGEFLDLKLLVDWAVESGFHLVQLLPIND 320 (975)
Q Consensus 248 ~~~p~~~~~p~~~~~~~~~-~~~~~~----R~~Gv~--~~l~SLrs~~~~GiGdf~dl~~~~d~~~~~G~~~~QilPl~~ 320 (975)
+. ......+.|+-.+.+ .....| ....|+ +|+-+... -|+|..+.+-+|.+++.|.+.|+|+|+++
T Consensus 63 ~~--~~~~~~S~V~d~~~~~w~~~~~~~~~~~~~viYE~hv~~f~~-----~G~~~gi~~~l~yl~~LGv~~i~L~Pi~~ 135 (542)
T TIGR02402 63 QP--DGVHGPSQVVDPDRYAWQDTGWRGRPLEEAVIYELHVGTFTP-----EGTFDAAIEKLPYLADLGITAIELMPVAQ 135 (542)
T ss_pred cc--cCCCCCeEEecCcccCCCCccccCCCccccEEEEEEhhhcCC-----CCCHHHHHHhhHHHHHcCCCEEEeCcccc
Confidence 11 111112222211111 011111 122232 33333321 57999888888999999999999999986
Q ss_pred CCCCCCCCCCCCCCcCCccccCccccChhhh
Q 002052 321 TSVNRMWWDSYPYSSLSVFALHPLYLRVQAL 351 (975)
Q Consensus 321 t~~~~~~~~~SPYs~~S~falNPlyI~l~~l 351 (975)
.... .+..|.+.+-|+.+|-|-.++++
T Consensus 136 ~~~~----~~~GY~~~~~~~~~~~~G~~~e~ 162 (542)
T TIGR02402 136 FPGT----RGWGYDGVLPYAPHNAYGGPDDL 162 (542)
T ss_pred CCCC----CCCCCCccCccccccccCCHHHH
Confidence 4311 12478888888888888776654
No 55
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=94.56 E-value=0.58 Score=57.84 Aligned_cols=165 Identities=16% Similarity=0.158 Sum_probs=88.1
Q ss_pred EEEEEEEecccCCCCEEEEEcCccccCCCC---ccccccccccCCCcEEEEEeccCCCCceeeeEEEECCCCCeeEeeCC
Q 002052 168 LVRFKICIPNIEEDASVYVIGSTSMLGQWK---LQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKSGKTGNISLETGA 244 (975)
Q Consensus 168 ~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~---~~~av~L~~~~~~~W~~~v~l~~~~~~~eYKyvi~~~~g~v~WE~G~ 244 (975)
.|+|+|-+|. -++|.|++-. +|+ +...++|....+..|++.|.-.. ..-.|||.+...++. .+-..|
T Consensus 20 ~~~F~vwaP~---a~~V~l~~~~----~~~~~~~~~~~~m~~~~~gvw~~~i~~~~--~g~~Y~y~v~~~~~~-~~~~DP 89 (605)
T TIGR02104 20 KTVFRVWAPT---ATEVELLLYK----SGEDGEPYKVVKMKRGENGVWSAVLEGDL--HGYFYTYQVCINGKW-RETVDP 89 (605)
T ss_pred eeEEEEECCC---CCEEEEEEEc----CCCCCccceEEecccCCCCEEEEEECCCC--CCCEEEEEEEcCCCe-EEEcCC
Confidence 3899999987 7889998743 343 34567898888899998886322 134799999763221 000000
Q ss_pred -CeeEEecCCCCCCceEeeccc------cccC----CCCcceEE--eeecCccCCCCCCc---ccCHHHHHH--------
Q 002052 245 -NRNLNVDFSNNQPRYIFLSDG------MMRE----MPWRGAGV--AVPMFSVRSEADLG---VGEFLDLKL-------- 300 (975)
Q Consensus 245 -NR~~~~p~~~~~p~~~~~~~~------~~~~----~~~R~~Gv--~~~l~SLrs~~~~G---iGdf~dl~~-------- 300 (975)
-|.+..+ + +.-++++.. +... .....--| =+|+-+.-...+-| .|.|..+.+
T Consensus 90 ya~~~~~~--~--~~s~v~d~~~~~~~~w~~~~~~~~~~~~~~vIYElhv~~ft~~~~~~~~~~G~f~~~~e~~~~~~~g 165 (605)
T TIGR02104 90 YAKAVTVN--G--KRGAVIDLERTNPEGWEKDHRPRLENPEDAIIYELHIRDFSIHENSGVKNKGKYLGLTETGTKGPNG 165 (605)
T ss_pred CcceeccC--C--CcEEEEcccccCccCcccccCCCCCChhHcEEEEEecchhccCCCCCcCCCCceeeeeccCcccccc
Confidence 0111100 0 101112110 0000 00011111 13443333222223 467765443
Q ss_pred ---HHHHHHHcCCCEEEEcCCCCCCCCC---CC-CCCCCCCcCCccccCcccc
Q 002052 301 ---LVDWAVESGFHLVQLLPINDTSVNR---MW-WDSYPYSSLSVFALHPLYL 346 (975)
Q Consensus 301 ---~~d~~~~~G~~~~QilPl~~t~~~~---~~-~~~SPYs~~S~falNPlyI 346 (975)
.++.+++.|.+.|+|+||++..... +. .-+.-|.+..=|+.++-|-
T Consensus 166 ~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~ 218 (605)
T TIGR02104 166 VSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYS 218 (605)
T ss_pred chhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhh
Confidence 4899999999999999998753100 00 0013677777777777664
No 56
>PLN02316 synthase/transferase
Probab=92.43 E-value=4.1 Score=53.05 Aligned_cols=258 Identities=12% Similarity=0.240 Sum_probs=139.2
Q ss_pred ceEEEEEEEEEE-CCCCCEEEEEeccCCcCCCCCCCcc--cccccCCCCCccEEEEEEcCCCceEEEEEEEEeCC-CCeE
Q 002052 21 KSLTVKFRIPYY-THWGQSLLVCGSEPVLGSWDVKKGF--LLSPVHQDDELIWSGSIAVPIGFSCEYSYYVVDDR-KNLL 96 (975)
Q Consensus 21 ~~~~V~F~V~~~-t~~Gq~L~VvGs~~eLG~W~~~~al--~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv~d~~-g~~i 96 (975)
++++|.++-... +.-.+.|+|.|+. -+|.....+ .|-......+..|.++|.+|.. ..---|+..|.. +...
T Consensus 329 ~~v~lyYN~~~~~L~~~~~v~i~gg~---N~W~~~~~~~~~~~~~~~~~g~ww~a~v~vP~~-A~~mDfVFsdg~~~~~~ 404 (1036)
T PLN02316 329 DTVKLYYNRSSGPLAHSTEIWIHGGY---NNWIDGLSIVEKLVKSEEKDGDWWYAEVVVPER-ALVLDWVFADGPPGNAR 404 (1036)
T ss_pred CEEEEEECCCCCCCCCCCcEEEEEeE---cCCCCCCcccceeecccCCCCCEEEEEEecCCC-ceEEEEEEecCCccccc
Confidence 446777776655 6667899999997 678765543 2222221122459999999975 333344444421 2233
Q ss_pred EeecCCCceEEcCCCCCCCceEEEeccccccccC-------------------------------------CCCcccchh
Q 002052 97 RWEMGKKRKLLLHETIKDGEVVELHDLWQTGGDA-------------------------------------LPFRSAFKN 139 (975)
Q Consensus 97 ~WE~g~NR~l~l~~~~~~g~~v~v~D~W~~~~~~-------------------------------------~~~ssaF~~ 139 (975)
.|+...+.-+.++-. .+ +.-.+.|....+. .+.+.. .
T Consensus 405 ~yDNn~~~Dyh~~v~--~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~r~k~~~~a~~~ae~k~~~~~~~l~~~~--~ 478 (1036)
T PLN02316 405 NYDNNGRQDFHAIVP--NN--IPEELYWVEEEHQIYRKLQEERRLREEAIRAKAEKTARMKAEMKEKTLKMFLLSQK--H 478 (1036)
T ss_pred ccccCCCcceeeecC--CC--CchhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc--e
Confidence 488776555555431 11 2233457521000 000000 0
Q ss_pred hhhcccccccccccccccccccCCCCceEEEEEEEecccCCCCEEEEEcCccccCCCCcccc----ccccccC-CCcEEE
Q 002052 140 VIFRRSFSLDIERSDGLIQNKLEQEDSVLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNG----LKLSYAG-ESVWEA 214 (975)
Q Consensus 140 vi~~~~~~~~~~~~~~~~~~~~~~~~~v~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~a----v~L~~~~-~~~W~~ 214 (975)
+++..+. .+...+.|+|..+-..+.+.--+.|++.|+.- +|.-..+ +.|..++ +..|.+
T Consensus 479 ~~~teP~-------------~~~aG~~v~v~Yn~~~t~l~~~~ev~~~g~~N---rWth~~~~~~~~~m~~~~~g~~~~a 542 (1036)
T PLN02316 479 IVYTEPL-------------EVQAGTTVTVLYNPANTVLNGKPEVWFRGSFN---RWTHRLGPLPPQKMVPADNGSHLKA 542 (1036)
T ss_pred EEEecCC-------------CCCCCCEEEEEECCCCCcCCCCceEEEEcccc---CcCCCCCCCCceeeeecCCCceEEE
Confidence 1111110 13446778888888777677778999999864 5766543 4676654 455699
Q ss_pred EEeccCCCCceeeeEEEECCCCCeeEeeCCCeeEEecCCCCCCceEeeccccccCCCCcceEEeeecCccCCCCCCcccC
Q 002052 215 DCVIQRGDFPIKYKYCKSGKTGNISLETGANRNLNVDFSNNQPRYIFLSDGMMREMPWRGAGVAVPMFSVRSEADLGVGE 294 (975)
Q Consensus 215 ~v~l~~~~~~~eYKyvi~~~~g~v~WE~G~NR~~~~p~~~~~p~~~~~~~~~~~~~~~R~~Gv~~~l~SLrs~~~~GiGd 294 (975)
+|.+|..-..+.|.|--.+.+| .|.+-...-+.+|..+..+. . ++-|-.=|+...+-+ ++. -|+||
T Consensus 543 ~v~vP~da~~mdfvFs~~~~g~--~yDn~~~~dyh~~v~g~~~~----~------~pM~Il~VSsE~~P~-aKv-GGLgD 608 (1036)
T PLN02316 543 TVKVPLDAYMMDFVFSEKEEGG--IFDNRNGLDYHIPVFGGIAK----E------PPMHIVHIAVEMAPI-AKV-GGLGD 608 (1036)
T ss_pred EEEccccceEEEEEEecCCCCC--CcCCCCCcCCcccccCCCCC----C------CCcEEEEEEcccCCC-CCc-CcHHH
Confidence 9999985555555553333222 35443333344443322111 0 011222222222211 221 24444
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCC
Q 002052 295 FLDLKLLVDWAVESGFHLVQLLPIND 320 (975)
Q Consensus 295 f~dl~~~~d~~~~~G~~~~QilPl~~ 320 (975)
-+..|..-+++.|.++-=++|.-+
T Consensus 609 --VV~sLp~ALa~~Gh~V~VitP~Y~ 632 (1036)
T PLN02316 609 --VVTSLSRAVQDLNHNVDIILPKYD 632 (1036)
T ss_pred --HHHHHHHHHHHcCCEEEEEecCCc
Confidence 378888999999999999999755
No 57
>KOG2421 consensus Predicted starch-binding protein [General function prediction only]
Probab=91.67 E-value=0.23 Score=58.49 Aligned_cols=68 Identities=19% Similarity=0.321 Sum_probs=57.0
Q ss_pred EEEEEEEEEE--CCCCCEEEEEeccCCcCCCCCCCcccccccCCCCC---ccEEEEEEcCCCceEEEEEEEEe
Q 002052 23 LTVKFRIPYY--THWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDE---LIWSGSIAVPIGFSCEYSYYVVD 90 (975)
Q Consensus 23 ~~V~F~V~~~--t~~Gq~L~VvGs~~eLG~W~~~~al~L~~~~~~~~---~~W~~~V~lp~~~~~eYKYvv~d 90 (975)
+..+|.+-.. ..+++.+.++|+++.||+|++..+.+++..+.... ..|.+.|.+|....++|.|.|..
T Consensus 44 ~~~~~~v~~n~~~~~~~~~~~vg~~~~lg~f~~~~~~pls~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~ 116 (417)
T KOG2421|consen 44 VIGHFGVGKNQLLYPDEYVAVVGENSALGNFNSAAALPLSFIEFDVQRTNRDWVAPVIIPRNIVIEYRYGITS 116 (417)
T ss_pred eecccccceecccCCcceeEeecccccccccchhhhcCccccchheeeeeccccceeEeccccccccceeeee
Confidence 5566666554 56999999999999999999999999998775432 44888999999889999999985
No 58
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=91.24 E-value=1.2 Score=42.17 Aligned_cols=64 Identities=23% Similarity=0.303 Sum_probs=47.7
Q ss_pred EEEEEEEecccCCCCEEEEEcCccccCCCCccccccccccCCCcEEEEEeccC-----CCCceeeeEEEECCCCCe
Q 002052 168 LVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQR-----GDFPIKYKYCKSGKTGNI 238 (975)
Q Consensus 168 ~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~l~~-----~~~~~eYKyvi~~~~g~v 238 (975)
.++|++-+|. -++|.|+|+- -+|++. ..+|...+...|++.|+... ...--.|||.+...+|..
T Consensus 6 g~~FrvwAP~---A~~V~l~GdF---n~W~~~-~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~ 74 (99)
T cd02854 6 GVTYREWAPN---AEEVYLIGDF---NNWDRN-AHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEW 74 (99)
T ss_pred eEEEEEECCC---CCEEEEEccC---CCCCCc-CcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCE
Confidence 5899999987 8999999865 588874 35687777889999987421 122458999998755653
No 59
>smart00642 Aamy Alpha-amylase domain.
Probab=90.81 E-value=0.68 Score=47.74 Aligned_cols=59 Identities=15% Similarity=0.223 Sum_probs=47.8
Q ss_pred cccCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCcCCccccCccccChhhh
Q 002052 291 GVGEFLDLKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQAL 351 (975)
Q Consensus 291 GiGdf~dl~~~~d~~~~~G~~~~QilPl~~t~~~~~~~~~SPYs~~S~falNPlyI~l~~l 351 (975)
|.|||.++.+-++.+++.|.+.|+|.|+....... .....|.+.+-+..||-|=+.+++
T Consensus 14 ~~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~--~~~~gY~~~d~~~i~~~~Gt~~d~ 72 (166)
T smart00642 14 GGGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGY--PSYHGYDISDYKQIDPRFGTMEDF 72 (166)
T ss_pred CCcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCC--CCCCCcCccccCCCCcccCCHHHH
Confidence 48899998888899999999999999998765321 123589999999999988776654
No 60
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=89.28 E-value=10 Score=50.08 Aligned_cols=146 Identities=17% Similarity=0.249 Sum_probs=77.1
Q ss_pred EEEEEEecccCCCCEEEEEcCccccCCCCc-cccccccccCCCcEEEEEe-ccCC---CCceeeeEEEECCCCCeeEeeC
Q 002052 169 VRFKICIPNIEEDASVYVIGSTSMLGQWKL-QNGLKLSYAGESVWEADCV-IQRG---DFPIKYKYCKSGKTGNISLETG 243 (975)
Q Consensus 169 V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~-~~av~L~~~~~~~W~~~v~-l~~~---~~~~eYKyvi~~~~g~v~WE~G 243 (975)
++|+|-+|+ -++|.|++--. ++|+. ...++|......+|++.|. +..+ -.-..|+|.+...+... --..
T Consensus 329 v~F~vWAP~---A~~V~L~lyd~--~~~~~~~~~~~m~~~~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~~~-~~~D 402 (1111)
T TIGR02102 329 VTLKLWSPS---ADHVSVVLYDK--DDQDKVVGTVELKKGDRGVWEVQLTKENTGIDSLTGYYYHYEITRGGDKV-LALD 402 (1111)
T ss_pred EEEEEECCC---CCEEEEEEEeC--CCCCCceeeEecccCCCCEEEEEECCcccCcccCCCceEEEEEECCCceE-EEeC
Confidence 899999998 88899887332 44543 2357898888899999986 2220 01357898886532110 0000
Q ss_pred C-CeeEEecCC------CCCCceEeeccccc----------cCCCCcceEEe--eecCccCCCCCC------cccCHHHH
Q 002052 244 A-NRNLNVDFS------NNQPRYIFLSDGMM----------REMPWRGAGVA--VPMFSVRSEADL------GVGEFLDL 298 (975)
Q Consensus 244 ~-NR~~~~p~~------~~~p~~~~~~~~~~----------~~~~~R~~Gv~--~~l~SLrs~~~~------GiGdf~dl 298 (975)
| -|.+....+ ......++++.... +....+.--|+ +||-+.-+..+. +.|+|..+
T Consensus 403 PYA~al~~~n~~~~~~~~~~~ks~vvD~~~~~p~~~~~~~~~~~~~~~d~vIYElHVrdFt~d~~~~~~~~~~~Gtf~gl 482 (1111)
T TIGR02102 403 PYAKSLAAWNDATSDDQIKVAKAAFVDPSSLGPQELDFAKIENFKKREDAIIYEAHVRDFTSDPAIAGDLTAQFGTFAAF 482 (1111)
T ss_pred hhheEEeccCcccccccCCCCceEEEcCcccCccccccccccccCCccceEEEEEechhhCcCCCCCcccccCCcCHHHH
Confidence 0 000100000 00011111221100 00011111121 233322222221 35899988
Q ss_pred HHHHHHHHHcCCCEEEEcCCCC
Q 002052 299 KLLVDWAVESGFHLVQLLPIND 320 (975)
Q Consensus 299 ~~~~d~~~~~G~~~~QilPl~~ 320 (975)
.+=++.++++|.+.|||+|+.+
T Consensus 483 ~ekLdYLkeLGVT~I~LmPv~d 504 (1111)
T TIGR02102 483 VEKLDYLQDLGVTHIQLLPVLS 504 (1111)
T ss_pred HHhHHHHHHcCCCEEEEcCccc
Confidence 8888999999999999999975
No 61
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=87.78 E-value=1.4 Score=39.61 Aligned_cols=62 Identities=26% Similarity=0.448 Sum_probs=48.4
Q ss_pred eEEEEEEEecccCCCCEEEEEcCccccCCCCcccccccc-ccCCCcEEEEEe--ccCCCCceeeeEEEECCCC
Q 002052 167 VLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLS-YAGESVWEADCV--IQRGDFPIKYKYCKSGKTG 236 (975)
Q Consensus 167 v~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~-~~~~~~W~~~v~--l~~~~~~~eYKyvi~~~~g 236 (975)
..|+|+|-+|. -++|.|+|.-.. +|+. ..++|. ......|+++++ ++.+ ...|+|.+...+|
T Consensus 11 ~~~~F~vwaP~---A~~V~l~~~~~~--~~~~-~~~~m~~~~~~G~w~~~~~~~~~~g--~~~Y~y~i~~~~g 75 (85)
T PF02922_consen 11 GGVTFRVWAPN---AKSVELVLYFNG--SWPA-EEYPMTRKDDDGVWEVTVPGDLPPG--GYYYKYRIDGDDG 75 (85)
T ss_dssp TEEEEEEE-TT---ESEEEEEEETTT--SSEE-EEEEEEEECTTTEEEEEEEGCGTTT--T-EEEEEEEETTT
T ss_pred CEEEEEEECCC---CCEEEEEEEeee--cCCC-ceEEeeecCCCCEEEEEEcCCcCCC--CEEEEEEEEeCCC
Confidence 57999999988 889999998888 6764 567898 678889999998 4431 3799999987654
No 62
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=86.59 E-value=2.1 Score=39.01 Aligned_cols=55 Identities=22% Similarity=0.170 Sum_probs=38.8
Q ss_pred EEEEEEEEEECCCCCEEEEEeccCCcCCCCCCCcccccccCCCCCccEEEEEEcCCCceEEEEEEE
Q 002052 23 LTVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIAVPIGFSCEYSYYV 88 (975)
Q Consensus 23 ~~V~F~V~~~t~~Gq~L~VvGs~~eLG~W~~~~al~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv 88 (975)
..++|+|-+++. ++|.|+|+.. + ...++|+..+++. |++++.-..+...+|+|.+
T Consensus 6 ~~v~F~vwAP~A--~~V~L~~~~~---~---~~~~~m~~~~~G~---W~~~v~~l~~g~Y~Y~~~v 60 (85)
T cd02858 6 RTVTFRLFAPKA--NEVQVRGSWG---G---AGSHPMTKDEAGV---WSVTTGPLAPGIYTYSFLV 60 (85)
T ss_pred CcEEEEEECCCC--CEEEEEeecC---C---CccEeCeECCCeE---EEEEECCCCCcEEEEEEEE
Confidence 468999988754 8999998752 2 3467898766544 9999843233456888877
No 63
>PLN02960 alpha-amylase
Probab=86.43 E-value=11 Score=48.09 Aligned_cols=57 Identities=14% Similarity=0.318 Sum_probs=43.8
Q ss_pred cccCHHHHH-HHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCcCCccccCccccChhhh
Q 002052 291 GVGEFLDLK-LLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQAL 351 (975)
Q Consensus 291 GiGdf~dl~-~~~d~~~~~G~~~~QilPl~~t~~~~~~~~~SPYs~~S~falNPlyI~l~~l 351 (975)
|+|+|.++. ++++.+++.|.+.|+|+||....... +.=|.+..=|+.++-|-.++++
T Consensus 411 ~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~----swGY~~~~yfa~~~~yGtp~df 468 (897)
T PLN02960 411 KISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYS----SVGYKVTNFFAVSSRFGTPDDF 468 (897)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCC----CCCCCcccCCCcccccCCHHHH
Confidence 689999875 78999999999999999998643221 2247777777788888777655
No 64
>KOG2421 consensus Predicted starch-binding protein [General function prediction only]
Probab=85.59 E-value=0.88 Score=53.66 Aligned_cols=68 Identities=28% Similarity=0.492 Sum_probs=52.8
Q ss_pred eEEEEEEEecc-cCCCCEEEEEcCccccCCCCccccccccccC-----C-CcEEEEEeccCCCCceeeeEEEECCC
Q 002052 167 VLVRFKICIPN-IEEDASVYVIGSTSMLGQWKLQNGLKLSYAG-----E-SVWEADCVIQRGDFPIKYKYCKSGKT 235 (975)
Q Consensus 167 v~V~F~v~~~~-~~~Ge~v~IvGs~~eLG~W~~~~av~L~~~~-----~-~~W~~~v~l~~~~~~~eYKyvi~~~~ 235 (975)
+...|.+.... +.+++.+.++|+++.||||+++.+.+++..+ . ..|++.+.+|. ...++|-|.+...+
T Consensus 44 ~~~~~~v~~n~~~~~~~~~~~vg~~~~lg~f~~~~~~pls~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~i~~~~ 118 (417)
T KOG2421|consen 44 VIGHFGVGKNQLLYPDEYVAVVGENSALGNFNSAAALPLSFIEFDVQRTNRDWVAPVIIPR-NIVIEYRYGITSED 118 (417)
T ss_pred eecccccceecccCCcceeEeecccccccccchhhhcCccccchheeeeeccccceeEecc-ccccccceeeeecC
Confidence 34445554443 4689999999999999999999999887632 1 67888999998 67889999888753
No 65
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=85.38 E-value=0.14 Score=61.22 Aligned_cols=95 Identities=13% Similarity=0.128 Sum_probs=82.6
Q ss_pred CeeeeccccccCCCchhhccCccc--ccccCcccCCCCCCCcCCCCCCCCCCCHHHHHHhhhHHHHHH-----HHHHhcc
Q 002052 488 VVLKGDLPIGVDRNSVDTWVYPNL--FRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRAR-----LTQMSKY 560 (975)
Q Consensus 488 I~L~gDLpigv~~dSaDvW~~~~l--F~~d~~aGaPPD~Fs~~GQnWG~P~ynw~~l~~~gy~ww~~R-----lr~~~~~ 560 (975)
.-..++-.++.++...|+++.++. |.++...+++|+..+.++++|+.+.+.+..+-+..|++|++| .-.++..
T Consensus 69 SPYs~~S~~a~N~~~Id~~~l~e~~~~~~~~~~~~l~~~~~~~~vdy~~v~~~K~~~L~~~~~~f~~~~~~~~~f~~F~~ 148 (520)
T COG1640 69 SPYSPSSRRALNPLYIDVEALPEFQDFLLDKDLQALPQLRALDWVDYAKVTALKRKALEKAFANFKKRKEREKDFAAFCQ 148 (520)
T ss_pred CCCCchhhhccCceeecHHHhhhhhhhccHHHHhhhhhhcccccccHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 445566677888999999999999 999999999999999999999999999999999999999999 3445666
Q ss_pred CCEEEecccccccee--------eeecCCC
Q 002052 561 FTAYRIDHILGFFRI--------WELPEHA 582 (975)
Q Consensus 561 ~d~lRIDH~~Gf~r~--------W~IP~~~ 582 (975)
.+..++||+-.|++| |-....+
T Consensus 149 ~~~~wL~d~A~F~Al~e~~~~~~W~~Wp~~ 178 (520)
T COG1640 149 EEGYWLDDYALFMALKEHFHAAGWQVWPDS 178 (520)
T ss_pred hccchhHHHHHHHHHHHHhcccccCCCChh
Confidence 788999999999999 7666543
No 66
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=84.96 E-value=1.8 Score=52.90 Aligned_cols=64 Identities=17% Similarity=0.308 Sum_probs=51.0
Q ss_pred ccCCCCCCcccCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCcCCccccCccccChhhh
Q 002052 283 SVRSEADLGVGEFLDLKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQAL 351 (975)
Q Consensus 283 SLrs~~~~GiGdf~dl~~~~d~~~~~G~~~~QilPl~~t~~~~~~~~~SPYs~~S~falNPlyI~l~~l 351 (975)
|.....+-|+|||..+.+-++.+++.|.+.|.|+|+..... ..++|.+..-+..||-|=+.+++
T Consensus 14 ~f~~~~~~~~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~-----~~~gY~~~d~~~id~~~Gt~~~~ 77 (543)
T TIGR02403 14 SFYDSTGDGTGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQ-----KDNGYDVSDYYAINPLFGTMADF 77 (543)
T ss_pred HHhcCCCCCccCHHHHHHhHHHHHHcCCCEEEECCcccCCC-----CCCCCCccccCccCcccCCHHHH
Confidence 44333445799999988889999999999999999987642 23599999988999988777654
No 67
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=84.90 E-value=1.5 Score=47.95 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=24.8
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEcCCCC
Q 002052 293 GEFLDLKLLVDWAVESGFHLVQLLPIND 320 (975)
Q Consensus 293 Gdf~dl~~~~d~~~~~G~~~~QilPl~~ 320 (975)
|||..+.+=+|.+++.|.+.|.|+|+..
T Consensus 1 Gd~~gi~~kLdyl~~lGv~~I~l~Pi~~ 28 (316)
T PF00128_consen 1 GDFRGIIDKLDYLKDLGVNAIWLSPIFE 28 (316)
T ss_dssp SSHHHHHHTHHHHHHHTESEEEESS-EE
T ss_pred CCHHHHHHhhHHHHHcCCCceecccccc
Confidence 7998888888999999999999999976
No 68
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=83.73 E-value=3.2 Score=37.86 Aligned_cols=54 Identities=19% Similarity=0.267 Sum_probs=39.3
Q ss_pred eEEEEEEEecccCCCCEEEEEcCccccCCCCccccccccccCCCcEEEEEe-ccCCCCceeeeEEE
Q 002052 167 VLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCV-IQRGDFPIKYKYCK 231 (975)
Q Consensus 167 v~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~-l~~~~~~~eYKyvi 231 (975)
..|+|++-+|. -++|.|+|+-. + ....+|...+...|++++. +.+ ..-.|+|++
T Consensus 6 ~~v~F~vwAP~---A~~V~L~~~~~---~---~~~~~m~~~~~G~W~~~v~~l~~--g~Y~Y~~~v 60 (85)
T cd02858 6 RTVTFRLFAPK---ANEVQVRGSWG---G---AGSHPMTKDEAGVWSVTTGPLAP--GIYTYSFLV 60 (85)
T ss_pred CcEEEEEECCC---CCEEEEEeecC---C---CccEeCeECCCeEEEEEECCCCC--cEEEEEEEE
Confidence 45899999987 69999998753 2 3457898888899999984 332 224677765
No 69
>PRK03705 glycogen debranching enzyme; Provisional
Probab=83.68 E-value=20 Score=45.02 Aligned_cols=56 Identities=23% Similarity=0.488 Sum_probs=38.8
Q ss_pred ccCHHHHHH--HHHHHHHcCCCEEEEcCCCCCCCCCC-----CCCCCCCCcCCccccCccccC
Q 002052 292 VGEFLDLKL--LVDWAVESGFHLVQLLPINDTSVNRM-----WWDSYPYSSLSVFALHPLYLR 347 (975)
Q Consensus 292 iGdf~dl~~--~~d~~~~~G~~~~QilPl~~t~~~~~-----~~~~SPYs~~S~falNPlyI~ 347 (975)
-|.|..+.+ .+|++++.|.+.|+|+|+.+...... ....--|.+.+=|+.+|-|-+
T Consensus 173 ~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt 235 (658)
T PRK03705 173 RGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYAS 235 (658)
T ss_pred cccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCC
Confidence 378877664 58999999999999999987532100 000125888887888887753
No 70
>PRK10785 maltodextrin glucosidase; Provisional
Probab=82.64 E-value=24 Score=43.79 Aligned_cols=54 Identities=17% Similarity=0.144 Sum_probs=44.6
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCcCCccccCccccChhhh
Q 002052 292 VGEFLDLKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQAL 351 (975)
Q Consensus 292 iGdf~dl~~~~d~~~~~G~~~~QilPl~~t~~~~~~~~~SPYs~~S~falNPlyI~l~~l 351 (975)
-|||..+.+=+|.+++.|.+.|.|+|+.+... ...|.+..=+..||.|=+.+++
T Consensus 175 GGDl~GI~~kLdYL~~LGv~~I~L~Pif~s~s------~hgYd~~Dy~~iDp~~Gt~~df 228 (598)
T PRK10785 175 GGDLDGISEKLPYLKKLGVTALYLNPIFTAPS------VHKYDTEDYRHVDPQLGGDAAL 228 (598)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCcccCCC------CCCcCcccccccCcccCCHHHH
Confidence 48998888888999999999999999987532 2479888888999988777654
No 71
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=81.71 E-value=6.2 Score=36.34 Aligned_cols=76 Identities=12% Similarity=0.246 Sum_probs=41.9
Q ss_pred ceEEEEEEEecccCCCCEEEEEcCccccCCCCccccccccccC----CCcEEEEEeccCCCCceeeeEEEECCCCCeeEe
Q 002052 166 SVLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAG----ESVWEADCVIQRGDFPIKYKYCKSGKTGNISLE 241 (975)
Q Consensus 166 ~v~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~~~----~~~W~~~v~l~~~~~~~eYKyvi~~~~g~v~WE 241 (975)
+++|.+.-....+.--++|++.+.- ++|.....+.|.... ...|+++|.+|... .+--||..|. .-.|+
T Consensus 3 ~vtVyYn~~~~~l~g~~~v~~~~G~---n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a--~~~dfvF~dg--~~~wD 75 (87)
T PF03423_consen 3 TVTVYYNPSLTALSGAPNVHLHGGF---NRWTHVPGFGMTKMCVPDEGGWWKATVDVPEDA--YVMDFVFNDG--AGNWD 75 (87)
T ss_dssp EEEEEE---E-SSS-S-EEEEEETT---S-B-SSS-EE-EEESS---TTEEEEEEE--TTT--SEEEEEEE-S--SS-EE
T ss_pred EEEEEEEeCCCCCCCCCcEEEEecC---CCCCcCCCCCcceeeeeecCCEEEEEEEEcCCc--eEEEEEEcCC--CCcEe
Confidence 4777776544433446788888774 799998888887765 78999999999743 3555666654 33587
Q ss_pred eCCCeeE
Q 002052 242 TGANRNL 248 (975)
Q Consensus 242 ~G~NR~~ 248 (975)
+-.+.-+
T Consensus 76 NN~g~nY 82 (87)
T PF03423_consen 76 NNNGANY 82 (87)
T ss_dssp STTTS-E
T ss_pred CCCCccE
Confidence 7444333
No 72
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=80.25 E-value=7.5 Score=36.72 Aligned_cols=65 Identities=15% Similarity=0.215 Sum_probs=44.2
Q ss_pred EEEEEEEEEECCCCCEEEEEeccCCcCCCCCCCcccccccCCCCCccEEEEEEcC------CCceEEEEEEEEeCCCCeE
Q 002052 23 LTVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIAVP------IGFSCEYSYYVVDDRKNLL 96 (975)
Q Consensus 23 ~~V~F~V~~~t~~Gq~L~VvGs~~eLG~W~~~~al~L~~~~~~~~~~W~~~V~lp------~~~~~eYKYvv~d~~g~~i 96 (975)
-.++|+|-++. -++|.|+|+- -+|++. ..+|...+.+ .|+++|+.- ....-.|||.|...+|+.+
T Consensus 5 ~g~~FrvwAP~--A~~V~l~GdF---n~W~~~-~~~m~k~~~G---~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~ 75 (99)
T cd02854 5 GGVTYREWAPN--AEEVYLIGDF---NNWDRN-AHPLKKDEFG---VWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWI 75 (99)
T ss_pred CeEEEEEECCC--CCEEEEEccC---CCCCCc-CcccEECCCC---EEEEEECCcccccccCCCCCEEEEEEEeCCCCEE
Confidence 35788888663 3689999865 689764 4568765444 499888641 1245689999986556553
No 73
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=77.87 E-value=32 Score=43.49 Aligned_cols=55 Identities=29% Similarity=0.522 Sum_probs=37.4
Q ss_pred ccCHHHHHH--HHHHHHHcCCCEEEEcCCCCCCCCCC--C---CCCCCCCcCCccccCcccc
Q 002052 292 VGEFLDLKL--LVDWAVESGFHLVQLLPINDTSVNRM--W---WDSYPYSSLSVFALHPLYL 346 (975)
Q Consensus 292 iGdf~dl~~--~~d~~~~~G~~~~QilPl~~t~~~~~--~---~~~SPYs~~S~falNPlyI 346 (975)
.|+|..+.+ .++.+++.|.+.|+|+|+.+...... . ...--|.+.+=|+.+|-|-
T Consensus 178 ~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~ 239 (688)
T TIGR02100 178 RGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYL 239 (688)
T ss_pred ccCHHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhc
Confidence 589988765 68999999999999999987521100 0 0012477777777766663
No 74
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=77.71 E-value=12 Score=34.48 Aligned_cols=75 Identities=15% Similarity=0.286 Sum_probs=40.0
Q ss_pred eEEEEEEEEEE-CCCCCEEEEEeccCCcCCCCCCCcccccccC----CCCCccEEEEEEcCCCceEEEEEEEEeCCCCeE
Q 002052 22 SLTVKFRIPYY-THWGQSLLVCGSEPVLGSWDVKKGFLLSPVH----QDDELIWSGSIAVPIGFSCEYSYYVVDDRKNLL 96 (975)
Q Consensus 22 ~~~V~F~V~~~-t~~Gq~L~VvGs~~eLG~W~~~~al~L~~~~----~~~~~~W~~~V~lp~~~~~eYKYvv~d~~g~~i 96 (975)
+++|.|+-... ..--++|++.+.. ++|.....+.|.... ++ .|+++|.+|... .+-.|+..| |...
T Consensus 3 ~vtVyYn~~~~~l~g~~~v~~~~G~---n~W~~~~~~~m~~~~~~~~~~---~~~~tv~vP~~a-~~~dfvF~d--g~~~ 73 (87)
T PF03423_consen 3 TVTVYYNPSLTALSGAPNVHLHGGF---NRWTHVPGFGMTKMCVPDEGG---WWKATVDVPEDA-YVMDFVFND--GAGN 73 (87)
T ss_dssp EEEEEE---E-SSS-S-EEEEEETT---S-B-SSS-EE-EEESS---TT---EEEEEEE--TTT-SEEEEEEE---SSS-
T ss_pred EEEEEEEeCCCCCCCCCcEEEEecC---CCCCcCCCCCcceeeeeecCC---EEEEEEEEcCCc-eEEEEEEcC--CCCc
Confidence 46777765433 3334689988876 799999999998766 33 499999998762 244555554 3333
Q ss_pred EeecCCCceE
Q 002052 97 RWEMGKKRKL 106 (975)
Q Consensus 97 ~WE~g~NR~l 106 (975)
|+.....-+
T Consensus 74 -wDNN~g~nY 82 (87)
T PF03423_consen 74 -WDNNNGANY 82 (87)
T ss_dssp -EESTTTS-E
T ss_pred -EeCCCCccE
Confidence 887554433
No 75
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=75.86 E-value=12 Score=32.68 Aligned_cols=57 Identities=18% Similarity=0.216 Sum_probs=40.6
Q ss_pred EEEEEEEEECCCCCEEEEEeccCCcCCCCCCCcccccccCCCCCccEEEEEEcCCCceEEEEEEEEe
Q 002052 24 TVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIAVPIGFSCEYSYYVVD 90 (975)
Q Consensus 24 ~V~F~V~~~t~~Gq~L~VvGs~~eLG~W~~~~al~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv~d 90 (975)
.++|+|..+. +++|.|+++... | ...++|....++. |+++|.........|+|.+..
T Consensus 5 ~v~f~v~ap~--a~~v~l~~~~~~---~--~~~~~~~~~~~g~---w~~~v~~~~~~~~~Y~~~v~~ 61 (83)
T cd02688 5 GVTFTVRGPK--AQRVSLAGSFNG---D--TQLIPMTKVEDGY---WEVELPLPSPGKYQYKYVLDG 61 (83)
T ss_pred cEEEEEECCC--CCEEEEEEEECC---C--CCcccCEECCCce---EEEEEcCCCCCCeEEEEEEeC
Confidence 5788887653 378999998642 4 2467887766544 999998765345789999964
No 76
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=75.20 E-value=5.3 Score=47.14 Aligned_cols=59 Identities=20% Similarity=0.424 Sum_probs=49.6
Q ss_pred CccCCCCCCcccCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCcCCccccCccccCh
Q 002052 282 FSVRSEADLGVGEFLDLKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRV 348 (975)
Q Consensus 282 ~SLrs~~~~GiGdf~dl~~~~d~~~~~G~~~~QilPl~~t~~~~~~~~~SPYs~~S~falNPlyI~l 348 (975)
.++=|+. +|.|.+-.+.+.-+++.|..+|-+.||+.+|.. .||||-..-+.+||.+...
T Consensus 11 QTvlsk~---~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S-----~S~YSI~Dql~~~~~~~~~ 69 (423)
T PF14701_consen 11 QTVLSKW---MGPFSDWEKHLKVISEKGYNMIHFTPLQERGES-----NSPYSIYDQLKFDPDFFPP 69 (423)
T ss_pred EEEhhhh---cCCHhHHHHHHHHHHHcCCcEEEecccccCCCC-----CCCccccchhhcChhhcCC
Confidence 3445554 899999888899999999999999999999854 3899998888888887755
No 77
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=74.67 E-value=6.1 Score=48.46 Aligned_cols=58 Identities=17% Similarity=0.291 Sum_probs=46.7
Q ss_pred CCcccCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCcCCccccCccccChhhh
Q 002052 289 DLGVGEFLDLKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQAL 351 (975)
Q Consensus 289 ~~GiGdf~dl~~~~d~~~~~G~~~~QilPl~~t~~~~~~~~~SPYs~~S~falNPlyI~l~~l 351 (975)
+-|+|||..+.+-+|.+++.|.+.|.|.|+.+... ....|.+..=+..||-|=..+++
T Consensus 26 ~~~~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~~-----~~~gY~~~d~~~id~~~Gt~~d~ 83 (551)
T PRK10933 26 GSGTGDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQ-----VDNGYDVANYTAIDPTYGTLDDF 83 (551)
T ss_pred CCCCcCHHHHHHhhHHHHhCCCCEEEECCCCCCCC-----CCCCCCcccCCCcCcccCCHHHH
Confidence 34799999988889999999999999999985421 12488888888889988776554
No 78
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=72.32 E-value=9.9 Score=33.99 Aligned_cols=62 Identities=18% Similarity=0.269 Sum_probs=42.6
Q ss_pred EEEEEEEEEECCCCCEEEEEeccCCcCCCCCCCccccc-ccCCCCCccEEEEEE--cCCCceEEEEEEEEeCCC
Q 002052 23 LTVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLS-PVHQDDELIWSGSIA--VPIGFSCEYSYYVVDDRK 93 (975)
Q Consensus 23 ~~V~F~V~~~t~~Gq~L~VvGs~~eLG~W~~~~al~L~-~~~~~~~~~W~~~V~--lp~~~~~eYKYvv~d~~g 93 (975)
-.++|+|-.++ -++|.|++.... +|+ ...++|+ ..+++ .|+++|. ++. ....|+|.|....|
T Consensus 11 ~~~~F~vwaP~--A~~V~l~~~~~~--~~~-~~~~~m~~~~~~G---~w~~~~~~~~~~-g~~~Y~y~i~~~~g 75 (85)
T PF02922_consen 11 GGVTFRVWAPN--AKSVELVLYFNG--SWP-AEEYPMTRKDDDG---VWEVTVPGDLPP-GGYYYKYRIDGDDG 75 (85)
T ss_dssp TEEEEEEE-TT--ESEEEEEEETTT--SSE-EEEEEEEEECTTT---EEEEEEEGCGTT-TT-EEEEEEEETTT
T ss_pred CEEEEEEECCC--CCEEEEEEEeee--cCC-CceEEeeecCCCC---EEEEEEcCCcCC-CCEEEEEEEEeCCC
Confidence 47888887663 358888888766 565 4688999 45544 4999998 332 25899999976554
No 79
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=72.28 E-value=8 Score=37.46 Aligned_cols=81 Identities=10% Similarity=0.097 Sum_probs=48.6
Q ss_pred ccCCCCcCCCceEEEEEEEEEECCCCCEEEE-EeccCCcCCCCCCCcccccccCC-CCCccEEEEEEcCCCceEEEEEEE
Q 002052 11 KSSKPLTMSVKSLTVKFRIPYYTHWGQSLLV-CGSEPVLGSWDVKKGFLLSPVHQ-DDELIWSGSIAVPIGFSCEYSYYV 88 (975)
Q Consensus 11 ~~~~~~~~~~~~~~V~F~V~~~t~~Gq~L~V-vGs~~eLG~W~~~~al~L~~~~~-~~~~~W~~~V~lp~~~~~eYKYvv 88 (975)
.|..+-+.+..+++|+|++...- =++|.| .|+.-+.+.....+-++|+.... .....|+++|.++.. .+.|.|.|
T Consensus 11 ~s~y~y~~~~~~l~IRLRt~k~D--v~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~-r~~Y~F~l 87 (120)
T PF02903_consen 11 DSEYAYPYDGDTLHIRLRTAKND--VEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEK-RLRYYFEL 87 (120)
T ss_dssp STTTEEEECTTEEEEEEEEETTT---SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTS-EEEEEEEE
T ss_pred CCCceEecCCCEEEEEEEecCCC--CCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCC-eEEEEEEE
Confidence 34444444555666666665331 125554 56665554444556778886442 234789999999864 59999999
Q ss_pred EeCCCCe
Q 002052 89 VDDRKNL 95 (975)
Q Consensus 89 ~d~~g~~ 95 (975)
.+ +|+.
T Consensus 88 ~~-~~~~ 93 (120)
T PF02903_consen 88 ED-GGET 93 (120)
T ss_dssp EE-TTEE
T ss_pred Ee-CCEE
Confidence 86 4433
No 80
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=71.42 E-value=16 Score=31.86 Aligned_cols=59 Identities=20% Similarity=0.285 Sum_probs=44.4
Q ss_pred EEEEEEEecccCCCCEEEEEcCccccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEEECCC
Q 002052 168 LVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKSGKT 235 (975)
Q Consensus 168 ~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~l~~~~~~~eYKyvi~~~~ 235 (975)
.|+|.|.++. +++|.|+++-.. |. ...+|.......|++.+..+. .-...|+|.+....
T Consensus 5 ~v~f~v~ap~---a~~v~l~~~~~~---~~--~~~~~~~~~~g~w~~~v~~~~-~~~~~Y~~~v~~~~ 63 (83)
T cd02688 5 GVTFTVRGPK---AQRVSLAGSFNG---DT--QLIPMTKVEDGYWEVELPLPS-PGKYQYKYVLDGGK 63 (83)
T ss_pred cEEEEEECCC---CCEEEEEEEECC---CC--CcccCEECCCceEEEEEcCCC-CCCeEEEEEEeCCC
Confidence 5899999886 689999998643 43 346788777789999998764 12468999987643
No 81
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=71.25 E-value=7.5 Score=47.51 Aligned_cols=57 Identities=21% Similarity=0.327 Sum_probs=45.6
Q ss_pred CcccCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCcCCccccCccccChhhh
Q 002052 290 LGVGEFLDLKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQAL 351 (975)
Q Consensus 290 ~GiGdf~dl~~~~d~~~~~G~~~~QilPl~~t~~~~~~~~~SPYs~~S~falNPlyI~l~~l 351 (975)
-|+|||..+.+-+|.+++.|.+.|.|+|+.+... ...+|.+..=+..||-|=+.+++
T Consensus 22 ~~~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~-----~~~gY~~~dy~~vd~~~Gt~~df 78 (539)
T TIGR02456 22 DGIGDFPGLTSKLDYLKWLGVDALWLLPFFQSPL-----RDDGYDVSDYRAILPEFGTIDDF 78 (539)
T ss_pred CCccCHHHHHHhHHHHHHCCCCEEEECCCcCCCC-----CCCCCCcccccccChhhCCHHHH
Confidence 3789999999999999999999999999987532 12588888878888877555443
No 82
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=71.03 E-value=26 Score=45.40 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=41.3
Q ss_pred EEEEEEEecccCCCCEEEEEcCccccCCCCcccccccccc-CCCcEEEEEeccCCCCceeeeEEEE
Q 002052 168 LVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYA-GESVWEADCVIQRGDFPIKYKYCKS 232 (975)
Q Consensus 168 ~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~~-~~~~W~~~v~l~~~~~~~eYKyvi~ 232 (975)
.++|+|-+|+ -++|.|++-. ++++....++|... ...+|++.+.-.. .-..|+|.+.
T Consensus 136 gv~FrVWAPt---A~~V~L~Ly~---~~~~~~~~~~M~~~~~~GVWsv~v~g~~--~G~~Y~Y~V~ 193 (898)
T TIGR02103 136 GVTFRLWAPT---AQQVKLHIYS---ASKKVETTLPMTRDSTSGVWSAEGGSSW--KGAYYRYEVT 193 (898)
T ss_pred cEEEEEECCC---CCEEEEEEEc---CCCCccceEeCccCCCCCEEEEEECcCC--CCCEeEEEEE
Confidence 5899999998 7889998654 23444556788775 5789999986332 2347999886
No 83
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=70.70 E-value=72 Score=43.07 Aligned_cols=60 Identities=18% Similarity=0.318 Sum_probs=43.3
Q ss_pred ccCHHHHH--HHHHHHHHcCCCEEEEcCCCCCCCCCC--CC--CC-CCCCcCCccccCcccc--Chhhh
Q 002052 292 VGEFLDLK--LLVDWAVESGFHLVQLLPINDTSVNRM--WW--DS-YPYSSLSVFALHPLYL--RVQAL 351 (975)
Q Consensus 292 iGdf~dl~--~~~d~~~~~G~~~~QilPl~~t~~~~~--~~--~~-SPYs~~S~falNPlyI--~l~~l 351 (975)
-|.|..|. ..++.+++.|.+.|+|+|+++...... .. .+ --|.+.+=|+.||-|- ..+++
T Consensus 181 ~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~ef 249 (1221)
T PRK14510 181 RGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEF 249 (1221)
T ss_pred CcHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHH
Confidence 36676666 788999999999999999997642110 00 00 1399999999999998 55544
No 84
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=69.58 E-value=4 Score=45.16 Aligned_cols=79 Identities=30% Similarity=0.503 Sum_probs=48.5
Q ss_pred cCCeeeeccccccCCCchhhccCcccccccCcccCCCC---CCCcCCCCCCCC----CCCHHHHHHhhhHHHHHHHHHHh
Q 002052 486 KGVVLKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAPPD---YFDKNGQNWGFP----TYNWEEMSKDNYAWWRARLTQMS 558 (975)
Q Consensus 486 ~gI~L~gDLpigv~~dSaDvW~~~~lF~~d~~aGaPPD---~Fs~~GQnWG~P----~ynw~~l~~~gy~ww~~Rlr~~~ 558 (975)
+-|.|.||+=| ++.--|+|.....+.....+|.+|. .|. .=.++|+- ..+++ ...|.||--|.+..-
T Consensus 141 ~~~vl~GD~NI--ap~~iDv~~~~~~~~n~~~~~f~~eeR~~~~-~ll~~G~~D~~R~~~p~---~~~YTwW~YR~~~~~ 214 (261)
T COG0708 141 KPVVLCGDFNI--APEEIDVANPKKRWLNEGNSGFLPEERAWFR-RLLNAGFVDTFRLFHPE---PEKYTWWDYRANAAR 214 (261)
T ss_pred CCEEEeccccc--CCchhcccCchhhhhcCCCCCCCHHHHHHHH-HHHHcchhhhhHhhCCC---CCcccccccccchhh
Confidence 45899999875 8889999955344444456777776 111 11123311 01111 124999999888444
Q ss_pred ccCCEEEeccccc
Q 002052 559 KYFTAYRIDHILG 571 (975)
Q Consensus 559 ~~~d~lRIDH~~G 571 (975)
+- -..||||++.
T Consensus 215 ~n-~G~RID~~l~ 226 (261)
T COG0708 215 RN-RGWRIDYILV 226 (261)
T ss_pred hc-CceeEEEEEe
Confidence 33 6799999975
No 85
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=68.17 E-value=44 Score=44.97 Aligned_cols=57 Identities=16% Similarity=0.311 Sum_probs=49.2
Q ss_pred CccCCCCCCcccCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCcCCccccCcccc
Q 002052 282 FSVRSEADLGVGEFLDLKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYL 346 (975)
Q Consensus 282 ~SLrs~~~~GiGdf~dl~~~~d~~~~~G~~~~QilPl~~t~~~~~~~~~SPYs~~S~falNPlyI 346 (975)
.++=|+. +|.|.+-.+-++.+++.|.++|-+.||++.+.. .||||-..=+..||.+-
T Consensus 121 qTvlsK~---mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~S-----nS~Ysi~Dyl~idP~~~ 177 (1464)
T TIGR01531 121 QTVLAKL---LGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGS-----NSCYSLYDQLQLNQHFK 177 (1464)
T ss_pred eeehhhh---cCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCC-----CCCccccchhhcChhhc
Confidence 3455664 999998889999999999999999999998853 38999999999999885
No 86
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=63.95 E-value=23 Score=45.41 Aligned_cols=29 Identities=24% Similarity=0.185 Sum_probs=26.5
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEcCCCC
Q 002052 292 VGEFLDLKLLVDWAVESGFHLVQLLPIND 320 (975)
Q Consensus 292 iGdf~dl~~~~d~~~~~G~~~~QilPl~~ 320 (975)
-|+|.++.+.++.+++.|.+.|.++|+..
T Consensus 12 ~~tf~~~~~~L~YL~~LGv~~V~lsPi~~ 40 (825)
T TIGR02401 12 GFTFDDAAALLPYLKSLGVSHLYLSPILT 40 (825)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCcCcc
Confidence 36899999999999999999999999954
No 87
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=63.87 E-value=17 Score=46.14 Aligned_cols=90 Identities=19% Similarity=0.262 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHcCCeeeeccccccCCCchhhccCcccccccCcccCCCCCCCcCCC----CCCCCCCCHHHHHHhhhHH
Q 002052 474 IQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAPPDYFDKNGQ----NWGFPTYNWEEMSKDNYAW 549 (975)
Q Consensus 474 ~Ql~~~~~yA~~~gI~L~gDLpigv~~dSaDvW~~~~lF~~d~~aGaPPD~Fs~~GQ----nWG~P~ynw~~l~~~gy~w 549 (975)
..++++.+.|+++||+++-|+-.. +-|.+...--..| | |.++.+|..... .||...+|-..-+ --+.
T Consensus 300 ~dlk~LVd~aH~~GI~VilDvV~n--H~~~~~~~gl~~f--D---g~~~~Yf~~~~~g~~~~w~~~~~N~~~~e--Vr~f 370 (758)
T PLN02447 300 EDLKYLIDKAHSLGLRVLMDVVHS--HASKNTLDGLNGF--D---GTDGSYFHSGPRGYHWLWDSRLFNYGNWE--VLRF 370 (758)
T ss_pred HHHHHHHHHHHHCCCEEEEEeccc--ccccccccccccc--C---CCCccccccCCCCCcCcCCCceecCCCHH--HHHH
Confidence 358889999999999999998763 2222211001122 2 556667754332 3776566533211 1123
Q ss_pred HHHHHHHHhc--cCCEEEecccccc
Q 002052 550 WRARLTQMSK--YFTAYRIDHILGF 572 (975)
Q Consensus 550 w~~Rlr~~~~--~~d~lRIDH~~Gf 572 (975)
.++-+++-++ .+|.+|+|.+--+
T Consensus 371 Ll~~~~~Wl~ey~IDGfRfDaV~sm 395 (758)
T PLN02447 371 LLSNLRWWLEEYKFDGFRFDGVTSM 395 (758)
T ss_pred HHHHHHHHHHHhCcccccccchhhh
Confidence 4444444333 3899999977543
No 88
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=63.81 E-value=5.7 Score=43.42 Aligned_cols=95 Identities=19% Similarity=0.337 Sum_probs=48.4
Q ss_pred HHHHHHHHcCCeeeeccccc-cCCCchh---hcc-----CcccccccCcccCCCCCCC--cCCCCCC-------------
Q 002052 478 EAAEYARKKGVVLKGDLPIG-VDRNSVD---TWV-----YPNLFRMNTSTGAPPDYFD--KNGQNWG------------- 533 (975)
Q Consensus 478 ~~~~yA~~~gI~L~gDLpig-v~~dSaD---vW~-----~~~lF~~d~~aGaPPD~Fs--~~GQnWG------------- 533 (975)
++.+.|+++||.|+-|+.+- ++.++.- .+. +++.|......+.||-.+. ..+.+|.
T Consensus 56 ~Lv~~~h~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (316)
T PF00128_consen 56 ELVDAAHKRGIKVILDVVPNHTSDDHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSD 135 (316)
T ss_dssp HHHHHHHHTTCEEEEEEETSEEETTSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTT
T ss_pred hhhhccccccceEEEeeeccccccccccccccccccccccccceeecccccccccccccccccccccccccccccccccc
Confidence 04567899999999999984 3333321 112 2333332212355554432 2233332
Q ss_pred CCCCCHHHHHHhhhHHHHHHHHHH-hccCCEEEeccccccce
Q 002052 534 FPTYNWEEMSKDNYAWWRARLTQM-SKYFTAYRIDHILGFFR 574 (975)
Q Consensus 534 ~P~ynw~~l~~~gy~ww~~Rlr~~-~~~~d~lRIDH~~Gf~r 574 (975)
.|-.|++.= .--...++-++.- ..++|.+|||++..+..
T Consensus 136 ~~dln~~n~--~v~~~i~~~~~~w~~~giDGfR~D~~~~~~~ 175 (316)
T PF00128_consen 136 LPDLNYENP--EVREYIIDVLKFWIEEGIDGFRLDAAKHIPK 175 (316)
T ss_dssp SEEBETTSH--HHHHHHHHHHHHHHHTTESEEEETTGGGSSH
T ss_pred cchhhhhhh--hhhhhhcccccchhhceEeEEEEccccccch
Confidence 344444321 1112233333322 23489999999988765
No 89
>PLN03244 alpha-amylase; Provisional
Probab=62.88 E-value=14 Score=46.64 Aligned_cols=86 Identities=17% Similarity=0.397 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHcCCeeeeccccccCCCchhhccCcccccccCcccCCCCCCCcC----CCCCCCCCCCHH---HH--H
Q 002052 473 HIQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAPPDYFDKN----GQNWGFPTYNWE---EM--S 543 (975)
Q Consensus 473 ~~Ql~~~~~yA~~~gI~L~gDLpigv~~dSaDvW~~~~lF~~d~~aGaPPD~Fs~~----GQnWG~P~ynw~---~l--~ 543 (975)
-..|+++.+.|+++||+++-|+-. ++-+.|.......| -|.|-.+|... -..||...+|.. +. -
T Consensus 440 PeDLK~LVD~aH~~GI~VILDvV~--NH~~~d~~~GL~~f-----DGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FL 512 (872)
T PLN03244 440 PDDFKRLVDEAHGLGLLVFLDIVH--SYAAADEMVGLSLF-----DGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFL 512 (872)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecC--ccCCCccccchhhc-----CCCccceeccCCCCccCCCCCceecCCCHHHHHHH
Confidence 457999999999999999999764 33344432222333 24443455433 236887666543 32 2
Q ss_pred HhhhHHHHHHHHHHhccCCEEEecccc
Q 002052 544 KDNYAWWRARLTQMSKYFTAYRIDHIL 570 (975)
Q Consensus 544 ~~gy~ww~~Rlr~~~~~~d~lRIDH~~ 570 (975)
-++-.+|.+-.. +|.+|+|.+-
T Consensus 513 Lsna~yWleEyh-----IDGFRfDaVt 534 (872)
T PLN03244 513 ISNLNWWITEYQ-----IDGFQFHSLA 534 (872)
T ss_pred HHHHHHHHHHhC-----cCcceeecch
Confidence 245556655443 7899999884
No 90
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=62.13 E-value=25 Score=43.01 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCCeeeeccccc
Q 002052 474 IQLSEAAEYARKKGVVLKGDLPIG 497 (975)
Q Consensus 474 ~Ql~~~~~yA~~~gI~L~gDLpig 497 (975)
.+++++.+.|+++||+||-|+.+-
T Consensus 76 ~df~~Lv~~ah~~Gi~vilD~V~N 99 (539)
T TIGR02456 76 DDFKDFVDEAHARGMRVIIDLVLN 99 (539)
T ss_pred HHHHHHHHHHHHCCCEEEEEeccC
Confidence 458899999999999999999874
No 91
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=62.05 E-value=22 Score=43.66 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCCeeeecccc
Q 002052 474 IQLSEAAEYARKKGVVLKGDLPI 496 (975)
Q Consensus 474 ~Ql~~~~~yA~~~gI~L~gDLpi 496 (975)
.+++++.+.|+++||.+|-|+.+
T Consensus 75 ~~~~~lv~~ah~~gi~vilD~v~ 97 (543)
T TIGR02403 75 ADFEELVSEAKKRNIKIMLDMVF 97 (543)
T ss_pred HHHHHHHHHHHHCCCEEEEEECc
Confidence 56899999999999999999886
No 92
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=60.86 E-value=21 Score=34.51 Aligned_cols=72 Identities=11% Similarity=0.118 Sum_probs=45.5
Q ss_pred CCceEEEEEEEecccCCCCEEEEEcCccccCCCCccccccccc----cCCCcEEEEEeccCCCCceeeeEEEECCCCCee
Q 002052 164 EDSVLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSY----AGESVWEADCVIQRGDFPIKYKYCKSGKTGNIS 239 (975)
Q Consensus 164 ~~~v~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~----~~~~~W~~~v~l~~~~~~~eYKyvi~~~~g~v~ 239 (975)
.+.+.|||++...- .-+...+.|+--+.+.....+-+.|.. .....|+++|.++. ..+.|.|.+.+ +|...
T Consensus 20 ~~~l~IRLRt~k~D--v~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~--~r~~Y~F~l~~-~~~~~ 94 (120)
T PF02903_consen 20 GDTLHIRLRTAKND--VEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPE--KRLRYYFELED-GGETY 94 (120)
T ss_dssp TTEEEEEEEEETTT---SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TT--SEEEEEEEEEE-TTEEE
T ss_pred CCEEEEEEEecCCC--CCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCC--CeEEEEEEEEe-CCEEE
Confidence 45567777776433 224444456666554444455567765 35678999999985 36999999998 55554
Q ss_pred E
Q 002052 240 L 240 (975)
Q Consensus 240 W 240 (975)
|
T Consensus 95 ~ 95 (120)
T PF02903_consen 95 Y 95 (120)
T ss_dssp E
T ss_pred E
Confidence 4
No 93
>PLN02316 synthase/transferase
Probab=60.55 E-value=51 Score=43.42 Aligned_cols=86 Identities=9% Similarity=0.244 Sum_probs=54.6
Q ss_pred cCCCCceEEEEEEEecccCCCCEEEEEcCccccCCCCccccc--c---ccccCCCcEEEEEeccCCCCceeeeEEEECC-
Q 002052 161 LEQEDSVLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGL--K---LSYAGESVWEADCVIQRGDFPIKYKYCKSGK- 234 (975)
Q Consensus 161 ~~~~~~v~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av--~---L~~~~~~~W~~~v~l~~~~~~~eYKyvi~~~- 234 (975)
.+..+.++|.++-....+.-.+.|+|.|+.- +|.-...+ + ....++..|.++|.+|..-..+.| |..|.
T Consensus 325 ~~aG~~v~lyYN~~~~~L~~~~~v~i~gg~N---~W~~~~~~~~~~~~~~~~~g~ww~a~v~vP~~A~~mDf--VFsdg~ 399 (1036)
T PLN02316 325 FKAGDTVKLYYNRSSGPLAHSTEIWIHGGYN---NWIDGLSIVEKLVKSEEKDGDWWYAEVVVPERALVLDW--VFADGP 399 (1036)
T ss_pred cCCCCEEEEEECCCCCCCCCCCcEEEEEeEc---CCCCCCcccceeecccCCCCCEEEEEEecCCCceEEEE--EEecCC
Confidence 4556777787777666666678899998764 67643322 2 222367799999999985444444 44443
Q ss_pred -CCCeeEeeCCCeeEEec
Q 002052 235 -TGNISLETGANRNLNVD 251 (975)
Q Consensus 235 -~g~v~WE~G~NR~~~~p 251 (975)
++...|.+-.+.=+.++
T Consensus 400 ~~~~~~yDNn~~~Dyh~~ 417 (1036)
T PLN02316 400 PGNARNYDNNGRQDFHAI 417 (1036)
T ss_pred cccccccccCCCcceeee
Confidence 23347877655555554
No 94
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=57.64 E-value=27 Score=43.48 Aligned_cols=86 Identities=15% Similarity=0.202 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHcCCeeeeccccccCCCchhhccCcccccccCcccCCCCCC-----CcCCCCCCCCCCCHHHHHHhhhH
Q 002052 474 IQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAPPDYF-----DKNGQNWGFPTYNWEEMSKDNYA 548 (975)
Q Consensus 474 ~Ql~~~~~yA~~~gI~L~gDLpigv~~dSaDvW~~~~lF~~d~~aGaPPD~F-----s~~GQnWG~P~ynw~~l~~~gy~ 548 (975)
..++++.+.|+++||++|-|+.+ ++-+.|-++.. .|. |- |.++ ......||.|.+|...- .--+
T Consensus 206 ~dlk~lV~~~H~~Gi~VilD~V~--NH~~~~~~~~~-~~~-----~~-~~y~~~~~~~~~~~~w~~~~~~~~~~--~Vr~ 274 (613)
T TIGR01515 206 DDFMYFVDACHQAGIGVILDWVP--GHFPKDDHGLA-EFD-----GT-PLYEHKDPRDGEHWDWGTLIFDYGRP--EVRN 274 (613)
T ss_pred HHHHHHHHHHHHCCCEEEEEecc--cCcCCccchhh-ccC-----CC-cceeccCCccCcCCCCCCceecCCCH--HHHH
Confidence 36899999999999999999886 44444433211 121 11 1111 22235689887766321 1123
Q ss_pred HHHHHHHHHhc--cCCEEEecccc
Q 002052 549 WWRARLTQMSK--YFTAYRIDHIL 570 (975)
Q Consensus 549 ww~~Rlr~~~~--~~d~lRIDH~~ 570 (975)
..++-+++-++ ..|.+|+|.+-
T Consensus 275 ~l~~~~~~W~~ey~iDG~R~D~v~ 298 (613)
T TIGR01515 275 FLVANALYWAEFYHIDGLRVDAVA 298 (613)
T ss_pred HHHHHHHHHHHHhCCcEEEEcCHH
Confidence 34444444433 37899999754
No 95
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=56.11 E-value=11 Score=47.31 Aligned_cols=57 Identities=28% Similarity=0.439 Sum_probs=41.8
Q ss_pred cCHHHHHHH--HHHHHHcCCCEEEEcCCCCCCCCCCCCC------CCCCCcCCccccCccccChhh
Q 002052 293 GEFLDLKLL--VDWAVESGFHLVQLLPINDTSVNRMWWD------SYPYSSLSVFALHPLYLRVQA 350 (975)
Q Consensus 293 Gdf~dl~~~--~d~~~~~G~~~~QilPl~~t~~~~~~~~------~SPYs~~S~falNPlyI~l~~ 350 (975)
|.|..|.+. ++++++.|.+.|||||+++-..... .+ .-=|+|..-||+.|-|-+=..
T Consensus 195 GTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~-l~~~gl~n~WGYdP~~fFAp~~~Yss~p~ 259 (697)
T COG1523 195 GTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPH-LDKSGLNNNWGYDPLNFFAPEGRYASNPE 259 (697)
T ss_pred cceehhccccHHHHHHHhCCceEEEecceEEecccc-ccccccccccCCCcccccCCCccccCCCC
Confidence 566666655 9999999999999999997432110 00 114889999999999986654
No 96
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=53.99 E-value=37 Score=40.88 Aligned_cols=92 Identities=15% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCeeeeccccccCCCchhhc------------------------cCcccccccCcccCC--------
Q 002052 474 IQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTW------------------------VYPNLFRMNTSTGAP-------- 521 (975)
Q Consensus 474 ~Ql~~~~~yA~~~gI~L~gDLpigv~~dSaDvW------------------------~~~~lF~~d~~aGaP-------- 521 (975)
..|+++.+.|+++||+||-|+-+ ++-|.+.+ ..-..|......|+.
T Consensus 81 ~dl~~Li~~~H~~Gi~vi~D~V~--NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (479)
T PRK09441 81 EELLNAIDALHENGIKVYADVVL--NHKAGADEKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWY 158 (479)
T ss_pred HHHHHHHHHHHHCCCEEEEEECc--ccccCCCcceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCc
Q ss_pred ---CCCC------------CcCCCCCC--------------CCCCCHH-----HHHHhhhHHHHHHHHHHhccCCEEEec
Q 002052 522 ---PDYF------------DKNGQNWG--------------FPTYNWE-----EMSKDNYAWWRARLTQMSKYFTAYRID 567 (975)
Q Consensus 522 ---PD~F------------s~~GQnWG--------------~P~ynw~-----~l~~~gy~ww~~Rlr~~~~~~d~lRID 567 (975)
|+.| ...++.|. +|-.|.+ ..-.+-..||++.+. +|.+|||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~g-----iDGfRlD 233 (479)
T PRK09441 159 HFSGTDYDENPDESGIFKIVGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTG-----FDGFRLD 233 (479)
T ss_pred CCCCcccccccCcCceEEecCCCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcC-----CCEEEEh
Q ss_pred ccccc
Q 002052 568 HILGF 572 (975)
Q Consensus 568 H~~Gf 572 (975)
.+..+
T Consensus 234 avk~v 238 (479)
T PRK09441 234 AVKHI 238 (479)
T ss_pred hhcCC
No 97
>PRK12313 glycogen branching enzyme; Provisional
Probab=53.63 E-value=34 Score=42.74 Aligned_cols=91 Identities=10% Similarity=0.052 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHcCCeeeeccccccCCCchhhccCcccccccCcccCCCCCCCcCCCCCCCCCCCHHHHHHhhhHHHHHH
Q 002052 474 IQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRAR 553 (975)
Q Consensus 474 ~Ql~~~~~yA~~~gI~L~gDLpigv~~dSaDvW~~~~lF~~d~~aGaPPD~Fs~~GQnWG~P~ynw~~l~~~gy~ww~~R 553 (975)
..++++.+.|+++||+++-|+.+ ++-|.|-|.. ..|.-..... -+|.-...-..||.+.+|+..-+- -+..++-
T Consensus 220 ~d~k~lv~~~H~~Gi~VilD~V~--nH~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~w~~~~~n~~~~~v--r~~l~~~ 293 (633)
T PRK12313 220 EDFMYLVDALHQNGIGVILDWVP--GHFPKDDDGL-AYFDGTPLYE-YQDPRRAENPDWGALNFDLGKNEV--RSFLISS 293 (633)
T ss_pred HHHHHHHHHHHHCCCEEEEEECC--CCCCCCcccc-cccCCCccee-ecCCCCCcCCCCCCcccCCCCHHH--HHHHHHH
Confidence 45889999999999999999886 4445453321 1221100000 011101111268888777643211 1223333
Q ss_pred HHHHhc--cCCEEEecccc
Q 002052 554 LTQMSK--YFTAYRIDHIL 570 (975)
Q Consensus 554 lr~~~~--~~d~lRIDH~~ 570 (975)
+++-++ ..|.+|+|.+-
T Consensus 294 ~~~W~~~~~iDG~R~D~~~ 312 (633)
T PRK12313 294 ALFWLDEYHLDGLRVDAVS 312 (633)
T ss_pred HHHHHHHhCCcEEEEcChh
Confidence 443333 38899999663
No 98
>PLN02361 alpha-amylase
Probab=52.52 E-value=60 Score=38.41 Aligned_cols=44 Identities=23% Similarity=0.239 Sum_probs=33.3
Q ss_pred ceEEeeecCccCCCCCCcccCHHHHHHHHHHHHHcCCCEEEEcCCCC
Q 002052 274 GAGVAVPMFSVRSEADLGVGEFLDLKLLVDWAVESGFHLVQLLPIND 320 (975)
Q Consensus 274 ~~Gv~~~l~SLrs~~~~GiGdf~dl~~~~d~~~~~G~~~~QilPl~~ 320 (975)
+..|++|-|-=.|... .-+..+.+=++.++++|++.|.|.|+..
T Consensus 10 ~~~v~lQ~F~W~~~~~---~~w~~i~~kl~~l~~lG~t~iwl~P~~~ 53 (401)
T PLN02361 10 GREILLQAFNWESHKH---DWWRNLEGKVPDLAKSGFTSAWLPPPSQ 53 (401)
T ss_pred CCcEEEEEEeccCCcc---HHHHHHHHHHHHHHHcCCCEEEeCCCCc
Confidence 4578888886666431 1346788889999999999999999853
No 99
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=51.39 E-value=47 Score=30.90 Aligned_cols=58 Identities=14% Similarity=0.151 Sum_probs=41.2
Q ss_pred EEEEEEEecccCCCCEEEEEcCccccCCCC---ccccccccccCCCcEEEEEeccCCCCceeeeEEEECC
Q 002052 168 LVRFKICIPNIEEDASVYVIGSTSMLGQWK---LQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKSGK 234 (975)
Q Consensus 168 ~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~---~~~av~L~~~~~~~W~~~v~l~~~~~~~eYKyvi~~~ 234 (975)
.++|+|-+|+ .++|.|+.-. +|+ +...++|....+..|.+.|.-... ...|+|.+...
T Consensus 9 ~~~F~vwAP~---A~~V~L~l~~----~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~--g~~Y~y~i~~~ 69 (100)
T cd02860 9 KTTFRLWAPT---AQSVKLLLYD----KDDQDKVLETVQMKRGENGVWSVTLDGDLE--GYYYLYEVKVY 69 (100)
T ss_pred CEEEEEECCC---CcEEEEEEEc----CCCCCCcceeEeeecCCCCEEEEEeCCccC--CcEEEEEEEEe
Confidence 3899999997 7888888632 343 233568988888999998863221 34799998654
No 100
>PLN02877 alpha-amylase/limit dextrinase
Probab=50.97 E-value=1.4e+02 Score=39.29 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=38.8
Q ss_pred EEEEEEEecccCCCCEEEEEcCccccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEEE
Q 002052 168 LVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKS 232 (975)
Q Consensus 168 ~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~l~~~~~~~eYKyvi~ 232 (975)
.++|+|-+|+ .++|.|+--... +.+.+..-++|. ..+.+|++.+.-... -..|+|.+.
T Consensus 223 g~~F~VWAPt---A~~V~L~lyd~~-~~~~~~~~~~m~-~~~GVWsv~v~~~~~--G~~Y~Y~V~ 280 (970)
T PLN02877 223 AVSLYLWAPT---AQAVSLCLYDDP-RGKEPLEIVQLK-ESNGVWSVEGPKSWE--GCYYVYEVS 280 (970)
T ss_pred CEEEEEECCC---CCEEEEEEecCC-CCccceEEeccc-CCCCEEEEEeccCCC--CCeeEEEEe
Confidence 5999999998 788888742211 123344446777 567899999874332 357899885
No 101
>PRK09505 malS alpha-amylase; Reviewed
Probab=49.80 E-value=39 Score=42.67 Aligned_cols=89 Identities=16% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCeeeeccccccCCCchhh-------ccCcccccccCcccCCCCCCCc----CCCCC----------
Q 002052 474 IQLSEAAEYARKKGVVLKGDLPIGVDRNSVDT-------WVYPNLFRMNTSTGAPPDYFDK----NGQNW---------- 532 (975)
Q Consensus 474 ~Ql~~~~~yA~~~gI~L~gDLpigv~~dSaDv-------W~~~~lF~~d~~aGaPPD~Fs~----~GQnW---------- 532 (975)
..++++.+.|+++||.||-|+.+ ++-|.+. |...=++..+......|..|+. .+|||
T Consensus 292 ~dfk~Lv~~aH~~Gi~VilD~V~--NH~~~~~~~d~~~~~f~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 369 (683)
T PRK09505 292 ADLRTLVDEAHQRGIRILFDVVM--NHTGYATLADMQEFQFGALYLSGDENKKTLGERWSDWQPAAGQNWHSFNDYINFS 369 (683)
T ss_pred HHHHHHHHHHHHCCCEEEEEECc--CCCcccccccccccchhhhhhhccccccccCcccccccccccccccccccccccC
Q ss_pred ----------------------------------CCCCCCHH-------------------------HHHH---hhhHHH
Q 002052 533 ----------------------------------GFPTYNWE-------------------------EMSK---DNYAWW 550 (975)
Q Consensus 533 ----------------------------------G~P~ynw~-------------------------~l~~---~gy~ww 550 (975)
++|-+|-+ .+++ +-..||
T Consensus 370 ~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~~~lp~f~~~~p~~~~~~~~n~~Vr~yL~~~ik~W 449 (683)
T PRK09505 370 DSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQASGLPVFYANKPDTRAKAIDGYTPRDYLTHWLSQW 449 (683)
T ss_pred CccccccccccccccccccccccccccccccccccCCcccccCccccccchhhhcCcccccccccCHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhccCCEEEeccc
Q 002052 551 RARLTQMSKYFTAYRIDHI 569 (975)
Q Consensus 551 ~~Rlr~~~~~~d~lRIDH~ 569 (975)
+++.. .|.+|||.+
T Consensus 450 v~e~G-----IDGfRlDaa 463 (683)
T PRK09505 450 VRDYG-----IDGFRVDTA 463 (683)
T ss_pred HHhcC-----CCEEEEech
No 102
>PRK14706 glycogen branching enzyme; Provisional
Probab=49.11 E-value=51 Score=41.34 Aligned_cols=85 Identities=14% Similarity=0.194 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHcCCeeeeccccccCCCchhhccCcccccccCcccCC----CCCCCcCCCCCCCCCCCH---HHHH--H
Q 002052 474 IQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAP----PDYFDKNGQNWGFPTYNW---EEMS--K 544 (975)
Q Consensus 474 ~Ql~~~~~yA~~~gI~L~gDLpigv~~dSaDvW~~~~lF~~d~~aGaP----PD~Fs~~GQnWG~P~ynw---~~l~--~ 544 (975)
+.++++.+.|+++||+++-|+.+ ++-+.|-+ .++..| |.| .|...-.-.+||...+|- +..+ -
T Consensus 217 ~~~~~lv~~~H~~gi~VilD~v~--nH~~~~~~---~l~~~d---g~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~ 288 (639)
T PRK14706 217 EDFKYLVNHLHGLGIGVILDWVP--GHFPTDES---GLAHFD---GGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLI 288 (639)
T ss_pred HHHHHHHHHHHHCCCEEEEEecc--cccCcchh---hhhccC---CCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHH
Confidence 56888999999999999999876 33333322 222222 222 111111124688766553 2221 1
Q ss_pred hhhHHHHHHHHHHhccCCEEEeccccc
Q 002052 545 DNYAWWRARLTQMSKYFTAYRIDHILG 571 (975)
Q Consensus 545 ~gy~ww~~Rlr~~~~~~d~lRIDH~~G 571 (975)
+.-.+|++-+ ..|.+|+|.+-.
T Consensus 289 ~~~~~W~~e~-----~iDG~R~Dav~~ 310 (639)
T PRK14706 289 GSALKWLQDF-----HVDGLRVDAVAS 310 (639)
T ss_pred HHHHHHHHHh-----CCCeEEEeeehh
Confidence 3445555443 489999997655
No 103
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=48.34 E-value=45 Score=40.90 Aligned_cols=85 Identities=18% Similarity=0.299 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHcCCeeeeccccc-cCCCchhhccCcccccccCcccCCCCCCCc-CCCCCCCCCCCHHHH-HHhhhHHH
Q 002052 474 IQLSEAAEYARKKGVVLKGDLPIG-VDRNSVDTWVYPNLFRMNTSTGAPPDYFDK-NGQNWGFPTYNWEEM-SKDNYAWW 550 (975)
Q Consensus 474 ~Ql~~~~~yA~~~gI~L~gDLpig-v~~dSaDvW~~~~lF~~d~~aGaPPD~Fs~-~GQnWG~P~ynw~~l-~~~gy~ww 550 (975)
.+++++.+.|+++||+++-|+.+. +++++. +. ..| + | +|.. ..-.||. .+|.+.- +..--+..
T Consensus 160 ~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~--~~--~~~-------~-~-y~~~~~~~~wg~-~~n~~~~~~~~vr~~i 225 (542)
T TIGR02402 160 DDLKALVDAAHGLGLGVILDVVYNHFGPEGN--YL--PRY-------A-P-YFTDRYSTPWGA-AINFDGPGSDEVRRYI 225 (542)
T ss_pred HHHHHHHHHHHHCCCEEEEEEccCCCCCccc--cc--ccc-------C-c-cccCCCCCCCCC-ccccCCCcHHHHHHHH
Confidence 478999999999999999999872 222221 10 011 1 2 5543 2446774 3555421 00111233
Q ss_pred HHHHHHHhc--cCCEEEecccccc
Q 002052 551 RARLTQMSK--YFTAYRIDHILGF 572 (975)
Q Consensus 551 ~~Rlr~~~~--~~d~lRIDH~~Gf 572 (975)
++-+++-++ ..|.+|+|.+-.+
T Consensus 226 ~~~~~~W~~e~~iDGfR~D~~~~~ 249 (542)
T TIGR02402 226 LDNALYWLREYHFDGLRLDAVHAI 249 (542)
T ss_pred HHHHHHHHHHhCCcEEEEeCHHHh
Confidence 344443332 4789999965443
No 104
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=45.60 E-value=30 Score=41.04 Aligned_cols=57 Identities=18% Similarity=0.258 Sum_probs=44.4
Q ss_pred CcccCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCcCCccccCccccChhhh
Q 002052 290 LGVGEFLDLKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQAL 351 (975)
Q Consensus 290 ~GiGdf~dl~~~~d~~~~~G~~~~QilPl~~t~~~~~~~~~SPYs~~S~falNPlyI~l~~l 351 (975)
.|+|||..+.+-+|+++..|.+.|-|+|+...-.. ...|....-...||.|-..+++
T Consensus 23 ~G~Gdl~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~-----~~gY~~~Dy~~id~~~Gt~~d~ 79 (505)
T COG0366 23 DGGGDLKGITEKLDYLKELGVDAIWLSPIFESPQA-----DHGYDVSDYTKVDPHFGTEEDF 79 (505)
T ss_pred CCcccHHhHHHhhhHHHHhCCCEEEeCCCCCCCcc-----CCCccccchhhcCcccCCHHHH
Confidence 57999999999999999999999999999876211 1367666666777766666554
No 105
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=44.29 E-value=54 Score=40.35 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCCeeeecccc
Q 002052 474 IQLSEAAEYARKKGVVLKGDLPI 496 (975)
Q Consensus 474 ~Ql~~~~~yA~~~gI~L~gDLpi 496 (975)
..++++.+.|+++||+++.|+.+
T Consensus 81 ~d~~~lv~~~h~~gi~vilD~V~ 103 (551)
T PRK10933 81 DDFDELVAQAKSRGIRIILDMVF 103 (551)
T ss_pred HHHHHHHHHHHHCCCEEEEEECC
Confidence 45889999999999999999986
No 106
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=42.71 E-value=77 Score=28.61 Aligned_cols=51 Identities=18% Similarity=0.285 Sum_probs=38.7
Q ss_pred EEEEEEEecccCCCCEEEEEcCccccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEEE
Q 002052 168 LVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKS 232 (975)
Q Consensus 168 ~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~l~~~~~~~eYKyvi~ 232 (975)
.++|+|-+|. .++|.|+..- | ..++|...+...|++.+.-.. ...|+|.+.
T Consensus 9 ~~~F~vwAP~---A~~V~l~l~~-----~---~~~~m~~~~~G~W~~~v~~~~---g~~Y~y~v~ 59 (85)
T cd02853 9 GTRFRLWAPD---AKRVTLRLDD-----G---EEIPMQRDGDGWFEAEVPGAA---GTRYRYRLD 59 (85)
T ss_pred CEEEEEeCCC---CCEEEEEecC-----C---CcccCccCCCcEEEEEeCCCC---CCeEEEEEC
Confidence 4899999998 7889998642 2 346788778889999887332 357999885
No 107
>PRK12568 glycogen branching enzyme; Provisional
Probab=42.10 E-value=56 Score=41.48 Aligned_cols=89 Identities=12% Similarity=0.141 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHcCCeeeeccccccCCCchhhccCcccccccCcccCCCCCCCcCCCCCCCCCCCHHHHHH-----hhhH
Q 002052 474 IQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSK-----DNYA 548 (975)
Q Consensus 474 ~Ql~~~~~yA~~~gI~L~gDLpigv~~dSaDvW~~~~lF~~d~~aGaPPD~Fs~~GQnWG~P~ynw~~l~~-----~gy~ 548 (975)
+.++++.+.|+++||+++-|+.+ ++-+.|.+.. ..|.-...--- +|.-....++||.-.||+..-+= +...
T Consensus 319 ~dfk~lV~~~H~~Gi~VIlD~V~--nH~~~d~~~l-~~fdg~~~Ye~-~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~ 394 (730)
T PRK12568 319 DGFAQFVDACHRAGIGVILDWVS--AHFPDDAHGL-AQFDGAALYEH-ADPREGMHRDWNTLIYNYGRPEVTAYLLGSAL 394 (730)
T ss_pred HHHHHHHHHHHHCCCEEEEEecc--ccCCcccccc-ccCCCcccccc-CCCcCCccCCCCCeecccCCHHHHHHHHHHHH
Confidence 46889999999999999999876 3333332211 11210000000 11111123578765566553221 3335
Q ss_pred HHHHHHHHHhccCCEEEeccccc
Q 002052 549 WWRARLTQMSKYFTAYRIDHILG 571 (975)
Q Consensus 549 ww~~Rlr~~~~~~d~lRIDH~~G 571 (975)
+|.+.. ..|.+|+|.+-.
T Consensus 395 ~Wl~ey-----hIDG~R~DAva~ 412 (730)
T PRK12568 395 EWIEHY-----HLDGLRVDAVAS 412 (730)
T ss_pred HHHHHh-----CceEEEEcCHhH
Confidence 555443 378999997743
No 108
>PLN00196 alpha-amylase; Provisional
Probab=42.01 E-value=71 Score=38.09 Aligned_cols=91 Identities=22% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCeeeeccccccCCCchhhccCccc---ccccCcccCCCCCCCcCCCC----CCCCCCCH------
Q 002052 473 HIQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTWVYPNL---FRMNTSTGAPPDYFDKNGQN----WGFPTYNW------ 539 (975)
Q Consensus 473 ~~Ql~~~~~yA~~~gI~L~gDLpigv~~dSaDvW~~~~l---F~~d~~aGaPPD~Fs~~GQn----WG~P~ynw------ 539 (975)
.++++++.+.|+++||++|.|+-+ ++-|+|-...+.. |.-+...+ +.+.|.-.+.. |.....+.
T Consensus 91 ~~elk~Lv~~aH~~GIkVilDvV~--NH~~~~~~~~~~~y~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (428)
T PLN00196 91 EAQLKSLIEAFHGKGVQVIADIVI--NHRTAEHKDGRGIYCLFEGGTPDS-RLDWGPHMICRDDTQYSDGTGNLDTGADF 167 (428)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECc--cCcccccccCCCceEECCCCCCCC-ccccccccCCCCcccccCCCCceeCCCCC
Q ss_pred --------------HHHHHhhhHHHHHHHHHHhccCCEEEecccccc
Q 002052 540 --------------EEMSKDNYAWWRARLTQMSKYFTAYRIDHILGF 572 (975)
Q Consensus 540 --------------~~l~~~gy~ww~~Rlr~~~~~~d~lRIDH~~Gf 572 (975)
+.|.+-. .||++.+. +|.+|+|=+.++
T Consensus 168 ~~lpDLn~~np~V~~~l~~~~-~wl~~~~G-----iDG~RlD~ak~~ 208 (428)
T PLN00196 168 AAAPDIDHLNKRVQRELIGWL-LWLKSDIG-----FDAWRLDFAKGY 208 (428)
T ss_pred CCCCccCCCCHHHHHHHHHHH-HHHhhCCC-----CCEEEeehhhhC
No 109
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=40.85 E-value=1.3e+02 Score=28.19 Aligned_cols=64 Identities=14% Similarity=0.117 Sum_probs=37.0
Q ss_pred EEEEEEEEECCCCCEEEEEeccCCcCCCCCCCcccccccCCC-CCccEEEEEEcCCCceEEEEEEEEe
Q 002052 24 TVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQD-DELIWSGSIAVPIGFSCEYSYYVVD 90 (975)
Q Consensus 24 ~V~F~V~~~t~~Gq~L~VvGs~~eLG~W~~~~al~L~~~~~~-~~~~W~~~V~lp~~~~~eYKYvv~d 90 (975)
+|+|+|+.....=++|.|.-..+.. .+..+-++|...... ....|+++|.++. ..+.|.|.+.+
T Consensus 17 ~v~irlr~~~~~v~~v~l~~~~~~~--~~~~~~~~M~~~~~~~~~~~~~~~i~~~~-~~~~Y~F~l~~ 81 (116)
T cd02857 17 TLHIRLRTKKGDVAKVYLRYGDPYD--KGEEEEVPMRKDGSDELFDYWEATLPPPT-GRLRYYFELVD 81 (116)
T ss_pred EEEEEEEecCCCccEEEEEEECCCC--CCCceEEEEEEeeeCCceeEEEEEEecCC-cEEEEEEEEEc
Confidence 3444444332233566664433321 112347788765532 2356999998775 78999999964
No 110
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=40.12 E-value=31 Score=41.29 Aligned_cols=41 Identities=24% Similarity=0.549 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCCeeeec-cccccCCCchhhccCcccccccCcccCCCCC
Q 002052 476 LSEAAEYARKKGVVLKGD-LPIGVDRNSVDTWVYPNLFRMNTSTGAPPDY 524 (975)
Q Consensus 476 l~~~~~yA~~~gI~L~gD-Lpigv~~dSaDvW~~~~lF~~d~~aGaPPD~ 524 (975)
|+++++.|+++||-||-| +.-|+.+-+ .-|++.. .|+.||.
T Consensus 245 l~~l~~~~~~~gillI~DEVQtG~GRTG-~~fa~E~-------~gv~PDi 286 (447)
T COG0160 245 LKALRKLCREHGILLIADEVQTGFGRTG-KMFAFEH-------FGVEPDI 286 (447)
T ss_pred HHHHHHHHHHcCCEEEEeccccCCCccc-cchhhhh-------cCCCCCE
Confidence 679999999999998888 999999999 7787643 5666663
No 111
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=39.85 E-value=2.2e+02 Score=26.27 Aligned_cols=57 Identities=30% Similarity=0.480 Sum_probs=39.5
Q ss_pred EEEEEEEecccCCCCEEEEEcCccccCCCCccccccccccC-CCcEEEEEe-ccCCCCceeeeEEEECC
Q 002052 168 LVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAG-ESVWEADCV-IQRGDFPIKYKYCKSGK 234 (975)
Q Consensus 168 ~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~~~-~~~W~~~v~-l~~~~~~~eYKyvi~~~ 234 (975)
.++|+|-+|. -++|.|+|+ .++|+.. ..+|...+ ...|.+.+. .+. + -.|+|.+...
T Consensus 22 ~~~frv~aP~---A~~V~l~~~---~~~~~~~-~~~m~~~~~~G~w~~~v~~~~~-~--~~Y~~~v~~~ 80 (106)
T cd02855 22 GVRFAVWAPN---ARRVSVVGD---FNGWDGR-RHPMRRRGDSGVWELFIPGLGE-G--ELYKYEILGA 80 (106)
T ss_pred CEEEEEECCC---CCEEEEEEE---CCCCCCc-ceecEECCCCCEEEEEECCCCC-C--CEEEEEEECC
Confidence 4889999987 789999974 2467543 45787755 778998775 222 1 2599988654
No 112
>PLN02960 alpha-amylase
Probab=38.98 E-value=63 Score=41.72 Aligned_cols=89 Identities=15% Similarity=0.282 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHcCCeeeeccccccCCCchhhccCcccccccCcccCCCCCCCc----CCCCCCCCCCCHHHHHHhhhHH
Q 002052 474 IQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAPPDYFDK----NGQNWGFPTYNWEEMSKDNYAW 549 (975)
Q Consensus 474 ~Ql~~~~~yA~~~gI~L~gDLpigv~~dSaDvW~~~~lF~~d~~aGaPPD~Fs~----~GQnWG~P~ynw~~l~~~gy~w 549 (975)
..++++.+.|+++||+++-|+-. ++-+.|....-..| -|.+.-+|.. ....||.+.+|-.. ..--+.
T Consensus 466 ~dfk~LVd~aH~~GI~VILDvV~--NH~~~d~~~~L~~F-----DG~~~~Yf~~~~~g~~~~WG~~~fNy~~--~eVr~f 536 (897)
T PLN02960 466 DDFKRLVDEAHGLGLLVFLDIVH--SYAAADEMVGLSLF-----DGSNDCYFHSGKRGHHKRWGTRMFKYGD--HEVLHF 536 (897)
T ss_pred HHHHHHHHHHHHCCCEEEEEecc--cccCCccccchhhc-----CCCccceeecCCCCccCCCCCcccCCCC--HHHHHH
Confidence 46889999999999999999764 33333321011122 2333334432 12359987765432 111223
Q ss_pred HHHHHHHHhc--cCCEEEeccccc
Q 002052 550 WRARLTQMSK--YFTAYRIDHILG 571 (975)
Q Consensus 550 w~~Rlr~~~~--~~d~lRIDH~~G 571 (975)
.++-+++-++ ++|.+|+|-+-.
T Consensus 537 Llsna~yWl~EyhIDGfR~DAV~s 560 (897)
T PLN02960 537 LLSNLNWWVTEYRVDGFQFHSLGS 560 (897)
T ss_pred HHHHHHHHHHHHCCCceeecccce
Confidence 3333333221 478999996644
No 113
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=38.59 E-value=1.3e+02 Score=27.87 Aligned_cols=56 Identities=20% Similarity=0.307 Sum_probs=36.3
Q ss_pred EEEEEEEEECCCCCEEEEEeccCCcCCCCCCCcccccccC-CCCCccEEEEEE-cCCCceEEEEEEEEe
Q 002052 24 TVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVH-QDDELIWSGSIA-VPIGFSCEYSYYVVD 90 (975)
Q Consensus 24 ~V~F~V~~~t~~Gq~L~VvGs~~eLG~W~~~~al~L~~~~-~~~~~~W~~~V~-lp~~~~~eYKYvv~d 90 (975)
.++|+|-.+.. ++|.|+++. ++|+.. ..+|...+ . .+|.+.+. ++.+. .|+|.+..
T Consensus 22 ~~~frv~aP~A--~~V~l~~~~---~~~~~~-~~~m~~~~~~---G~w~~~v~~~~~~~--~Y~~~v~~ 79 (106)
T cd02855 22 GVRFAVWAPNA--RRVSVVGDF---NGWDGR-RHPMRRRGDS---GVWELFIPGLGEGE--LYKYEILG 79 (106)
T ss_pred CEEEEEECCCC--CEEEEEEEC---CCCCCc-ceecEECCCC---CEEEEEECCCCCCC--EEEEEEEC
Confidence 57888877744 789999753 467543 45787654 3 35997775 22222 49998864
No 114
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=35.03 E-value=89 Score=38.90 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHcCCeeeecccc
Q 002052 475 QLSEAAEYARKKGVVLKGDLPI 496 (975)
Q Consensus 475 Ql~~~~~yA~~~gI~L~gDLpi 496 (975)
.++++.+.|+++||++|-|+-+
T Consensus 230 efk~lV~~~H~~Gi~VilDvV~ 251 (605)
T TIGR02104 230 ELKQMIQALHENGIRVIMDVVY 251 (605)
T ss_pred HHHHHHHHHHHCCCEEEEEEEc
Confidence 4788999999999999999987
No 115
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=34.76 E-value=1.1e+02 Score=28.38 Aligned_cols=57 Identities=21% Similarity=0.128 Sum_probs=37.5
Q ss_pred EEEEEEEEECCCCCEEEEEeccCCcCCCC---CCCcccccccCCCCCccEEEEEEcCCCceEEEEEEEEe
Q 002052 24 TVKFRIPYYTHWGQSLLVCGSEPVLGSWD---VKKGFLLSPVHQDDELIWSGSIAVPIGFSCEYSYYVVD 90 (975)
Q Consensus 24 ~V~F~V~~~t~~Gq~L~VvGs~~eLG~W~---~~~al~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv~d 90 (975)
.++|+|-+++. ++|.|+.-. +|+ +...++|+...++ +|+++|.-. .....|+|.+..
T Consensus 9 ~~~F~vwAP~A--~~V~L~l~~----~~~~~~~~~~~~m~~~~~g---vw~~~v~~~-~~g~~Y~y~i~~ 68 (100)
T cd02860 9 KTTFRLWAPTA--QSVKLLLYD----KDDQDKVLETVQMKRGENG---VWSVTLDGD-LEGYYYLYEVKV 68 (100)
T ss_pred CEEEEEECCCC--cEEEEEEEc----CCCCCCcceeEeeecCCCC---EEEEEeCCc-cCCcEEEEEEEE
Confidence 57899988753 578777632 343 3346789875554 499888632 234579999964
No 116
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=34.09 E-value=1.1e+02 Score=28.69 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=39.5
Q ss_pred EEEEEEecccCCCCEEEEEcCccccCCCCccccccccccCCCcEEEEEe-ccCCCCceeeeEEEEC
Q 002052 169 VRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCV-IQRGDFPIKYKYCKSG 233 (975)
Q Consensus 169 V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~-l~~~~~~~eYKyvi~~ 233 (975)
++|+|-+|+ .++|.|+.-.. +.....++|....+..|.+.+. +.. -..|+|.+-.
T Consensus 11 ~~F~vwAP~---A~~V~L~l~~~----~~~~~~~~m~~~~~GvW~~~v~~~~~---g~~Y~y~i~g 66 (103)
T cd02856 11 CNFAVHSEN---ATRIELCLFDE----DGSETRLPLTEEYGGVWHGFLPGIKA---GQRYGFRVHG 66 (103)
T ss_pred eEEEEECCC---CCEEEEEEEeC----CCCEEEEEcccccCCEEEEEECCCCC---CCEEEEEECC
Confidence 889999987 78888887432 2212346888878899999986 333 3489999954
No 117
>PRK03705 glycogen debranching enzyme; Provisional
Probab=32.93 E-value=1.1e+02 Score=38.61 Aligned_cols=56 Identities=14% Similarity=0.152 Sum_probs=38.2
Q ss_pred EEEEEEEecccCCCCEEEEEcCccccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEEE
Q 002052 168 LVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKS 232 (975)
Q Consensus 168 ~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~l~~~~~~~eYKyvi~ 232 (975)
.|.|+|-+|+ .++|.|+.-.. ++....++|....+.+|.+.|.=... -..|+|-+.
T Consensus 20 g~~F~vwAP~---A~~V~L~l~~~----~~~~~~~~m~~~~~gvW~~~v~~~~~--G~~Y~yrv~ 75 (658)
T PRK03705 20 GVNFTLFSAH---AERVELCVFDE----NGQEQRYDLPARSGDIWHGYLPGARP--GLRYGYRVH 75 (658)
T ss_pred CEEEEEECCC---CCEEEEEEEcC----CCCeeeEeeeeccCCEEEEEECCCCC--CCEEEEEEc
Confidence 3899999987 67888876321 22223567877778899999873222 347999885
No 118
>PLN02784 alpha-amylase
Probab=32.82 E-value=1.5e+02 Score=38.33 Aligned_cols=88 Identities=17% Similarity=0.359 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCeeeeccccccCCCchh---------------hccCcccccccCcccCCCCCCCcCCCCC------
Q 002052 474 IQLSEAAEYARKKGVVLKGDLPIGVDRNSVD---------------TWVYPNLFRMNTSTGAPPDYFDKNGQNW------ 532 (975)
Q Consensus 474 ~Ql~~~~~yA~~~gI~L~gDLpigv~~dSaD---------------vW~~~~lF~~d~~aGaPPD~Fs~~GQnW------ 532 (975)
.+|+++.+.|+++||++|.|+-+ ++-+++ -|.++....-+ ..|.-.|..|
T Consensus 568 ~ELk~LI~a~H~~GIkVIlDiVi--NH~ag~f~~~~g~~~~f~g~~dW~d~~i~~dd-------p~F~GrG~~~sgddf~ 638 (894)
T PLN02784 568 DELKDLVKSFHEVGIKVLGDAVL--NHRCAHFQNQNGVWNIFGGRLNWDDRAVVADD-------PHFQGRGNKSSGDNFH 638 (894)
T ss_pred HHHHHHHHHHHHCCCEEEEEECc--ccccccccCCCCcccccCCeecCCCCcccCCC-------cccCCcCCcCcccccC
Q ss_pred CCCCCCH--HHHHHhhhHHHHHHHHHHhccCCEEEecccccc
Q 002052 533 GFPTYNW--EEMSKDNYAWWRARLTQMSKYFTAYRIDHILGF 572 (975)
Q Consensus 533 G~P~ynw--~~l~~~gy~ww~~Rlr~~~~~~d~lRIDH~~Gf 572 (975)
+.|-.|- ...+++=..|-+-.+...- ||.+|+|-+.||
T Consensus 639 ~lPDLDh~npeVR~eL~~WlkWL~~e~G--~DGfRLDaVKgf 678 (894)
T PLN02784 639 AAPNIDHSQDFVRKDLKEWLCWMRKEVG--YDGWRLDFVRGF 678 (894)
T ss_pred cCCcCCCCCHHHHHHHHHHHHHHHhccC--CCEEEEeccCCC
No 119
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=31.40 E-value=25 Score=34.91 Aligned_cols=22 Identities=18% Similarity=0.501 Sum_probs=20.0
Q ss_pred CCCcEEecCCCCchhHHHHHhc
Q 002052 803 NYMTVCAPSCHDCSTLRAWWEE 824 (975)
Q Consensus 803 ~~~sVa~tsTHD~~TlrgWW~~ 824 (975)
+..++|+||+||.+||..|-..
T Consensus 87 ti~Amc~tg~~~~~sL~~WI~~ 108 (126)
T PF14784_consen 87 TIFAMCMTGTSDKDSLLSWIRG 108 (126)
T ss_pred eEEEEEeccCCCHHHHHHHHHH
Confidence 6789999999999999999864
No 120
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=30.37 E-value=1.9e+02 Score=37.46 Aligned_cols=151 Identities=17% Similarity=0.262 Sum_probs=92.8
Q ss_pred eEEEEEEEecccCCCCEEEEEcCccccCC-CCccccccccccC------CCcEEEEEeccCCCCceeeeEEEECCCCCee
Q 002052 167 VLVRFKICIPNIEEDASVYVIGSTSMLGQ-WKLQNGLKLSYAG------ESVWEADCVIQRGDFPIKYKYCKSGKTGNIS 239 (975)
Q Consensus 167 v~V~F~v~~~~~~~Ge~v~IvGs~~eLG~-W~~~~av~L~~~~------~~~W~~~v~l~~~~~~~eYKyvi~~~~g~v~ 239 (975)
-.|+|++-+ . ..|..|.|--|+|.=|| .+.++-..|.|.. .-.=.+.|++...+ .+.|-|-+-+.+ .
T Consensus 29 ~~l~~~~~a-S-llgkkv~v~Tnyp~~gntf~r~kfr~l~w~~p~~~~~~~d~~~qln~~~sG-sf~yyf~ledne-k-- 102 (1521)
T KOG3625|consen 29 YELQFRLGA-S-LLGKKVTVYTNYPFPGNTFNREKFRSLDWENPTEREDDSDKYCQLNLQQSG-SFQYYFSLEDNE-K-- 102 (1521)
T ss_pred cEEEEeeCC-c-ccccceEEEecCCCCCcccchhhhhcccccCcccccccccceeeEEeccCc-cEEEEEEecCcc-c--
Confidence 568888876 3 67999999999999998 4444444444432 11224566666533 566655432221 1
Q ss_pred EeeCCCeeEEecCCCCCCceEeeccccccCCCCcceEEeeecCccCCCCCCc--ccCHHHHHHHHHHHHHcCCCEEEEcC
Q 002052 240 LETGANRNLNVDFSNNQPRYIFLSDGMMREMPWRGAGVAVPMFSVRSEADLG--VGEFLDLKLLVDWAVESGFHLVQLLP 317 (975)
Q Consensus 240 WE~G~NR~~~~p~~~~~p~~~~~~~~~~~~~~~R~~Gv~~~l~SLrs~~~~G--iGdf~dl~~~~d~~~~~G~~~~QilP 317 (975)
.|.-..+.. |.+ .+. +.+=.+||-|++-+.=.- +|-|.+-..-.+.++++|..+|.+-|
T Consensus 103 --~g~~Yfvv~------P~L-~v~----------~~~k~lPLdsva~QtvlaK~LGpl~eWeprL~va~e~gYNmIHfTP 163 (1521)
T KOG3625|consen 103 --SGGGYFVVD------PIL-RVG----------ADNKVLPLDSVALQTVLAKLLGPLDEWEPRLRVAKESGYNMIHFTP 163 (1521)
T ss_pred --cCceEEEEe------eeE-Eec----------CCCceeccchhhHHHHHHHhcCChhhhhHHHHHHHHcCCceEeeee
Confidence 121112221 111 011 123345555544332111 67888888889999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCcCCccccCccccC
Q 002052 318 INDTSVNRMWWDSYPYSSLSVFALHPLYLR 347 (975)
Q Consensus 318 l~~t~~~~~~~~~SPYs~~S~falNPlyI~ 347 (975)
|+..+.. .||||-..-.-+||-+-+
T Consensus 164 lqelG~S-----~S~YSl~dql~~~~~~~~ 188 (1521)
T KOG3625|consen 164 LQELGLS-----RSCYSLADQLELNPDFSR 188 (1521)
T ss_pred HHHhccC-----CCccchHhhhhcChhhhc
Confidence 9999854 489998888888888773
No 121
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=29.15 E-value=1.3e+02 Score=40.14 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHcCCeeeecccc
Q 002052 474 IQLSEAAEYARKKGVVLKGDLPI 496 (975)
Q Consensus 474 ~Ql~~~~~yA~~~gI~L~gDLpi 496 (975)
+.++++.+.|+++||++|.|+-+
T Consensus 555 ~EfK~LV~alH~~GI~VILDVVy 577 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDVVY 577 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEeccc
Confidence 36888999999999999999876
No 122
>PF00479 G6PD_N: Glucose-6-phosphate dehydrogenase, NAD binding domain; InterPro: IPR022674 Glucose-6-phosphate dehydrogenase (1.1.1.49 from EC) (G6PDH) is a ubiquitous protein, present in bacteria and all eukaryotic cell types []. The enzyme catalyses the the first step in the pentose pathway, i.e. the conversion of glucose-6-phosphate to gluconolactone 6-phosphate in the presence of NADP, producing NADPH. The ubiquitous expression of the enzyme gives it a major role in the production of NADPH for the many NADPH-mediated reductive processes in all cells []. Deficiency of G6PDH is a common genetic abnormality affecting millions of people worldwide. Many sequence variants, most caused by single point mutations, are known, exhibiting a wide variety of phenotypes []. This entry represents the NAD-binding domain of glucose-6-phosphate dehydrogenase.; GO: 0004345 glucose-6-phosphate dehydrogenase activity, 0050661 NADP binding, 0006006 glucose metabolic process, 0055114 oxidation-reduction process; PDB: 4EM5_C 4E9I_A 2DPG_A 1E77_A 1E7M_A 1H9B_A 1E7Y_A 1DPG_B 1H93_A 1H9A_A ....
Probab=27.78 E-value=28 Score=36.60 Aligned_cols=22 Identities=50% Similarity=0.830 Sum_probs=12.6
Q ss_pred HHHHHHHHhccCC---EEEeccccc
Q 002052 550 WRARLTQMSKYFT---AYRIDHILG 571 (975)
Q Consensus 550 w~~Rlr~~~~~~d---~lRIDH~~G 571 (975)
-++.=+...++|+ ++||||++|
T Consensus 153 A~~Ln~~l~~~f~E~qIyRIDHYLG 177 (183)
T PF00479_consen 153 ARELNDQLAEYFDEEQIYRIDHYLG 177 (183)
T ss_dssp HHHHHHHHCTTS-GGGEEE--GGGG
T ss_pred HHHHHHHHHHhCCHHHeeehhhhcc
Confidence 3444445555665 899999998
No 123
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=27.50 E-value=1.1e+02 Score=39.54 Aligned_cols=13 Identities=46% Similarity=0.733 Sum_probs=12.0
Q ss_pred cCCEEEecccccc
Q 002052 560 YFTAYRIDHILGF 572 (975)
Q Consensus 560 ~~d~lRIDH~~Gf 572 (975)
..|.+||||+-|+
T Consensus 247 ~vdGlRIDh~dGL 259 (825)
T TIGR02401 247 LVDGLRIDHIDGL 259 (825)
T ss_pred CCceEEecccccc
Confidence 3799999999999
No 124
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=26.65 E-value=44 Score=34.77 Aligned_cols=52 Identities=15% Similarity=0.251 Sum_probs=38.8
Q ss_pred cCCChhHHHHHHHHhhhhhhhhhhH-HHHHhhhccccccccCCCccEEeecCCCCCCcHHHHHHHhCCC
Q 002052 714 MDLDDHSKNVLKRLYYDYYFHRQEN-LWRENALKTLPALLNSSDMMACGEDLGLIPSCVHPVMEELGLI 781 (975)
Q Consensus 714 ~~L~~~~~~~~~~l~~~~~~~r~~~-~w~~~~~~~L~~l~~~t~~lv~gEDLG~vp~~V~~~l~~lgi~ 781 (975)
+.||++|++.+-+-|+|||..+.++ .-.+ =|.++||.--+-.++.+++.++.
T Consensus 15 ~~lp~~e~~e~l~~Y~e~f~d~~~~G~sEe----------------eii~~LG~P~~iA~~i~~~~~i~ 67 (181)
T PF08006_consen 15 KKLPEEEREEILEYYEEYFDDAGEEGKSEE----------------EIIAELGSPKEIAREILAEYSIK 67 (181)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhhhCCCCHH----------------HHHHHcCCHHHHHHHHHHhhhhh
Confidence 4699999999999999999987541 1111 24467888888888888877654
No 125
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=26.20 E-value=1.3e+02 Score=28.28 Aligned_cols=55 Identities=13% Similarity=0.256 Sum_probs=36.0
Q ss_pred EEEEEEEEECCCCCEEEEEeccCCcCCCCCCCcccccccCCCCCccEEEEEE-cCCCceEEEEEEEE
Q 002052 24 TVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIA-VPIGFSCEYSYYVV 89 (975)
Q Consensus 24 ~V~F~V~~~t~~Gq~L~VvGs~~eLG~W~~~~al~L~~~~~~~~~~W~~~V~-lp~~~~~eYKYvv~ 89 (975)
.++|+|-++. .++|.|+.... ++....++|+..+++ +|.++|. +. ....|+|.|.
T Consensus 10 g~~F~vwAP~--A~~V~L~l~~~----~~~~~~~~m~~~~~G---vW~~~v~~~~--~g~~Y~y~i~ 65 (103)
T cd02856 10 GCNFAVHSEN--ATRIELCLFDE----DGSETRLPLTEEYGG---VWHGFLPGIK--AGQRYGFRVH 65 (103)
T ss_pred CeEEEEECCC--CCEEEEEEEeC----CCCEEEEEcccccCC---EEEEEECCCC--CCCEEEEEEC
Confidence 4788888775 46788887432 221235788765544 5998885 33 3568999994
No 126
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=25.89 E-value=1.6e+02 Score=26.55 Aligned_cols=51 Identities=8% Similarity=0.085 Sum_probs=35.4
Q ss_pred EEEEEEEEECCCCCEEEEEeccCCcCCCCCCCcccccccCCCCCccEEEEEEcCCCceEEEEEEEE
Q 002052 24 TVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIAVPIGFSCEYSYYVV 89 (975)
Q Consensus 24 ~V~F~V~~~t~~Gq~L~VvGs~~eLG~W~~~~al~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv~ 89 (975)
.++|+|-++.. ++|.|+... + +.++|...+++ +|++++.-- ....|+|.+.
T Consensus 9 ~~~F~vwAP~A--~~V~l~l~~-----~---~~~~m~~~~~G---~W~~~v~~~--~g~~Y~y~v~ 59 (85)
T cd02853 9 GTRFRLWAPDA--KRVTLRLDD-----G---EEIPMQRDGDG---WFEAEVPGA--AGTRYRYRLD 59 (85)
T ss_pred CEEEEEeCCCC--CEEEEEecC-----C---CcccCccCCCc---EEEEEeCCC--CCCeEEEEEC
Confidence 47899987763 678888642 2 35788765544 599888732 4568999995
No 127
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=25.17 E-value=2e+02 Score=36.02 Aligned_cols=71 Identities=23% Similarity=0.417 Sum_probs=46.0
Q ss_pred ceEEEEEEEEEECCCCCEEEEEeccCCcCCCCCCCcccccccCCCCCccEEEEEE-cCCCceEEEEEEEEeCCCCeEEee
Q 002052 21 KSLTVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIA-VPIGFSCEYSYYVVDDRKNLLRWE 99 (975)
Q Consensus 21 ~~~~V~F~V~~~t~~Gq~L~VvGs~~eLG~W~~~~al~L~~~~~~~~~~W~~~V~-lp~~~~~eYKYvv~d~~g~~i~WE 99 (975)
+-..++|+|=++. -+.|.|+|+- -+|+ +.+|......+..+|+++|. ++.+ -.|||.+.+.+|.. .+-
T Consensus 34 g~~~~~F~vWAP~--a~~V~vvgdf---n~w~---~~~~~~~~~~~~G~we~~vp~~~~G--~~Yky~l~~~~g~~-~~~ 102 (628)
T COG0296 34 GVSGVRFRVWAPN--ARRVSLVGDF---NDWD---GRRMPMRDRKESGIWELFVPGAPPG--TRYKYELIDPSGQL-RLK 102 (628)
T ss_pred CCCceEEEEECCC--CCeEEEEeec---CCcc---ceecccccCCCCceEEEeccCCCCC--CeEEEEEeCCCCce-eec
Confidence 3346899887653 3578888885 3464 44444443322356999998 6765 79999999888844 344
Q ss_pred cCC
Q 002052 100 MGK 102 (975)
Q Consensus 100 ~g~ 102 (975)
..+
T Consensus 103 ~DP 105 (628)
T COG0296 103 ADP 105 (628)
T ss_pred cCc
Confidence 433
No 128
>PRK05402 glycogen branching enzyme; Provisional
Probab=24.84 E-value=1.6e+02 Score=37.48 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=47.8
Q ss_pred EEEEEEEecccCCCCEEEEEcCccccCCCCcccccccccc-CCCcEEEEEeccCCCCceeeeEEEECCCCCeeEeeCCCe
Q 002052 168 LVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYA-GESVWEADCVIQRGDFPIKYKYCKSGKTGNISLETGANR 246 (975)
Q Consensus 168 ~V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~~-~~~~W~~~v~l~~~~~~~eYKyvi~~~~g~v~WE~G~NR 246 (975)
-++|+|-+|. -++|.|+|+-.. .+..+|... +...|++-|.+ ...-.|||.+.+ +|....-..|..
T Consensus 29 g~~f~vwaP~---A~~V~vvgdfn~------~~~~~m~~~~~~G~w~~~ip~---~~g~~YKy~i~~-~g~~~~k~DPya 95 (726)
T PRK05402 29 GLVVRALLPG---AEEVWVILPGGG------RKLAELERLHPRGLFAGVLPR---KGPFDYRLRVTW-GGGEQLIDDPYR 95 (726)
T ss_pred cEEEEEECCC---CeEEEEEeecCC------CccccceEcCCCceEEEEecC---CCCCCeEEEEEe-CCceeEeccccc
Confidence 5899999998 899999997652 345567653 56789988873 234569999998 777655555544
No 129
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=22.14 E-value=1.2e+02 Score=30.32 Aligned_cols=76 Identities=17% Similarity=0.332 Sum_probs=49.1
Q ss_pred HHHHHHHHHHcCCeeeeccccccCCCchhhccCcccccccCcccCCC--CCCCcCCCCCCCCCCCHHHHHHhhhHHHHHH
Q 002052 476 LSEAAEYARKKGVVLKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAPP--DYFDKNGQNWGFPTYNWEEMSKDNYAWWRAR 553 (975)
Q Consensus 476 l~~~~~yA~~~gI~L~gDLpigv~~dSaDvW~~~~lF~~d~~aGaPP--D~Fs~~GQnWG~P~ynw~~l~~~gy~ww~~R 553 (975)
+.++.+.|+++||.++.=+-++++...++ .||+-|..+. -|-|+ +.+...| |....+|=... +.-.+.
T Consensus 46 lge~v~a~h~~Girv~ay~~~~~d~~~~~--~HPeW~~~~~-~G~~~~~~~~~~~~--~~~~c~ns~Y~-----e~~~~~ 115 (132)
T PF14871_consen 46 LGEQVEACHERGIRVPAYFDFSWDEDAAE--RHPEWFVRDA-DGRPMRGERFGYPG--WYTCCLNSPYR-----EFLLEQ 115 (132)
T ss_pred HHHHHHHHHHCCCEEEEEEeeecChHHHH--hCCceeeECC-CCCCcCCCCcCCCC--ceecCCCccHH-----HHHHHH
Confidence 56778889999999999888887766665 8999998875 56653 1222222 44444442222 245566
Q ss_pred HHHHhccC
Q 002052 554 LTQMSKYF 561 (975)
Q Consensus 554 lr~~~~~~ 561 (975)
++..++.|
T Consensus 116 i~Ei~~~y 123 (132)
T PF14871_consen 116 IREILDRY 123 (132)
T ss_pred HHHHHHcC
Confidence 66666544
No 130
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=21.36 E-value=2.9e+02 Score=26.46 Aligned_cols=59 Identities=17% Similarity=0.117 Sum_probs=39.0
Q ss_pred EEEEEEecccCCCCEEEEEcCccccCCCCccccccccccC---CCcEEEEEeccCCCCceeeeEEEEC
Q 002052 169 VRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAG---ESVWEADCVIQRGDFPIKYKYCKSG 233 (975)
Q Consensus 169 V~F~v~~~~~~~Ge~v~IvGs~~eLG~W~~~~av~L~~~~---~~~W~~~v~l~~~~~~~eYKyvi~~ 233 (975)
++|.|-+|+ .++|.|+.-.+.- ...+..-++|...+ +..|.+.|.=...+ ..|+|.+..
T Consensus 9 ~~F~vwAP~---A~~V~L~lf~~~~-~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g--~~Y~y~v~g 70 (119)
T cd02852 9 VNFSVYSSN---ATAVELLLFDPGD-GDEPALEIELDPSVNRTGDVWHVFVEGLKPG--QLYGYRVDG 70 (119)
T ss_pred EEEEEECCC---CCEEEEEEEeCCC-CCCceEEEeCcCcccccCCEEEEEECCCCCC--CEEEEEECC
Confidence 889999987 7888888743211 23343346786544 68999988632213 489998864
No 131
>PRK10785 maltodextrin glucosidase; Provisional
Probab=21.20 E-value=1e+02 Score=38.45 Aligned_cols=33 Identities=24% Similarity=0.115 Sum_probs=28.9
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC
Q 002052 292 VGEFLDLKLLVDWAVESGFHLVQLLPINDTSVN 324 (975)
Q Consensus 292 iGdf~dl~~~~d~~~~~G~~~~QilPl~~t~~~ 324 (975)
.|+-.|+++||+-|++.|+++|-=..+|.++..
T Consensus 222 ~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~ 254 (598)
T PRK10785 222 LGGDAALLRLRHATQQRGMRLVLDGVFNHTGDS 254 (598)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCC
Confidence 456679999999999999999999999988754
No 132
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=21.15 E-value=1.7e+02 Score=38.08 Aligned_cols=55 Identities=20% Similarity=0.190 Sum_probs=42.1
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCcCCccccCccccChhhh
Q 002052 293 GEFLDLKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQAL 351 (975)
Q Consensus 293 Gdf~dl~~~~d~~~~~G~~~~QilPl~~t~~~~~~~~~SPYs~~S~falNPlyI~l~~l 351 (975)
++|.++.+.++++++.|++.|.++|+....++. +..|....=...||-|=..+++
T Consensus 17 ~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs----~hGYdv~D~~~idp~lGt~e~f 71 (879)
T PRK14511 17 FTFDDAAELVPYFADLGVSHLYLSPILAARPGS----THGYDVVDHTRINPELGGEEGL 71 (879)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECcCccCCCCC----CCCCCcCCCCCcCCCCCCHHHH
Confidence 578899999999999999999999997653221 1367777777788877655544
No 133
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=20.85 E-value=75 Score=33.96 Aligned_cols=37 Identities=32% Similarity=0.485 Sum_probs=32.3
Q ss_pred cceEEeeecCccCC------CCCCcccCHHHHHHHHHHHHHcC
Q 002052 273 RGAGVAVPMFSVRS------EADLGVGEFLDLKLLVDWAVESG 309 (975)
Q Consensus 273 R~~Gv~~~l~SLrs------~~~~GiGdf~dl~~~~d~~~~~G 309 (975)
++-|+.+=-|..|+ ..+.|||+..|++..+||+.+..
T Consensus 57 ~~~G~atlRfNfRgVG~S~G~fD~GiGE~~Da~aaldW~~~~h 99 (210)
T COG2945 57 VKRGFATLRFNFRGVGRSQGEFDNGIGELEDAAAALDWLQARH 99 (210)
T ss_pred HhCCceEEeecccccccccCcccCCcchHHHHHHHHHHHHhhC
Confidence 66788888888888 88889999999999999998754
Done!