BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002053
(974 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CXK|A Chain A, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
pdb|2CXK|B Chain B, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
pdb|2CXK|C Chain C, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
pdb|2CXK|D Chain D, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
pdb|2CXK|E Chain E, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
Length = 95
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 6/88 (6%)
Query: 392 IIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSS 451
+ D+SP W+Y VKVLITG + QEA N +SC+F +I VPA ++ GVLRC+ +
Sbjct: 9 VTDYSPEWSYPEGGVKVLITGPW----QEASN-NYSCLFDQISVPASLIQPGVLRCYCPA 63
Query: 452 QKVGRVPFYVTCSNRLSCSEVREFEYRA 479
G V V +N++ + V FEY++
Sbjct: 64 HDTGLVTLQVAFNNQIISNSVV-FEYKS 90
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 583 EGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRER 642
E G P D G+ LH+AA G+ ++ G + N +D +G T LH+AA G +
Sbjct: 25 ENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKE 84
Query: 643 TVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGI 682
V L++ GA DP K GRTP A+ GHK I
Sbjct: 85 IVKLLLSKGA------DPNAKDSDGRTPLHYAAENGHKEI 118
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 585 GKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTV 644
G P D G+ LH+AA G+ ++ G + N +D +G T LH+AA G + V
Sbjct: 60 GADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIV 119
Query: 645 ASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGI 682
L++ GA DP GRTP DLA G++ I
Sbjct: 120 KLLLSKGA------DPNTSDSDGRTPLDLAREHGNEEI 151
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G+ LH AA G+ ++ G + N +D +G T LH AA G + V L++ G
Sbjct: 34 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQG 93
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGHKGI 682
A DP K G+TP LA+ GHK +
Sbjct: 94 A------DPNAKDSDGKTPLHLAAENGHKEV 118
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 585 GKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTV 644
G P D G+ LH AA G+ ++ G + N +D +G T LH AA G + V
Sbjct: 60 GADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVV 119
Query: 645 ASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGI 682
L++ GA DP GRTP DLA G++ +
Sbjct: 120 KLLLSQGA------DPNTSDSDGRTPLDLAREHGNEEV 151
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 49.7 bits (117), Expect = 8e-06, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
DH G+ LH AAA+G+ +E G ++N D NG T LH AA G V L+ G
Sbjct: 32 DHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYG 91
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGH 679
A D K +G TP LA+ GH
Sbjct: 92 A------DVNAKDATGITPLYLAAYWGH 113
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 591 LDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIAL 650
+D G LH AA+LG+ +E G ++N +D G T L+ AAY G V L+
Sbjct: 64 VDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKH 123
Query: 651 GAAPGALSDPTPKYPSGRTPADLASSIGHKGIA 683
GA D + G+T D++ IG++ +A
Sbjct: 124 GA------DVNAQDKFGKTAFDISIDIGNEDLA 150
Score = 33.9 bits (76), Expect = 0.41, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 602 AAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPT 661
AA G D + G + N D G T LH AA G V L+ GA A+
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDT-- 66
Query: 662 PKYPSGRTPADLASSIGH 679
+G TP LA+S+GH
Sbjct: 67 ----NGTTPLHLAASLGH 80
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 583 EGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRER 642
E G D G+ LH+AA G+ ++ G ++N +D +G T LH+AA G +
Sbjct: 25 ENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKE 84
Query: 643 TVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGI 682
V LI+ GA D K GRTP A+ GHK I
Sbjct: 85 IVKLLISKGA------DVNAKDSDGRTPLHYAAKEGHKEI 118
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G+ LH+AA G+ ++ G ++N +D +G T LH+AA G + V LI+ G
Sbjct: 67 DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKG 126
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGHKGI 682
A D GRTP DLA G++ I
Sbjct: 127 A------DVNTSDSDGRTPLDLAREHGNEEI 151
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 583 EGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRER 642
E G D G+ LH AA G+ ++ AG ++N +D NG T LH AA G
Sbjct: 23 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 82
Query: 643 TVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGH 679
V L+ GA D K +GRTP LA+ GH
Sbjct: 83 VVKLLLEAGA------DVNAKDKNGRTPLHLAARNGH 113
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 595 GQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAP 654
G+ LH AA G+ ++ AG ++N +D NG T LH AA G V L+ GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-- 59
Query: 655 GALSDPTPKYPSGRTPADLASSIGH 679
D K +GRTP LA+ GH
Sbjct: 60 ----DVNAKDKNGRTPLHLAARNGH 80
Score = 37.0 bits (84), Expect = 0.047, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 33/70 (47%)
Query: 583 EGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRER 642
E G D G+ LH AA G+ ++ AG ++N +D NG T LH AA G
Sbjct: 56 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 115
Query: 643 TVASLIALGA 652
V L+ GA
Sbjct: 116 VVKLLLEAGA 125
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G LH AA +G+ +E G ++N RD +GWT LH AA G V L+ G
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYG 103
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGH 679
A D + G TP LA+ GH
Sbjct: 104 A------DVNAQDAYGLTPLHLAADRGH 125
Score = 35.0 bits (79), Expect = 0.22, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 602 AAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPT 661
AA G D + G ++N D G T LH AA+ G V L+ GA D
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGA------DVN 74
Query: 662 PKYPSGRTPADLASSIGH 679
+ G TP LA+ GH
Sbjct: 75 ARDTDGWTPLHLAADNGH 92
Score = 31.2 bits (69), Expect = 3.2, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G LH AA G+ +E G ++N +D G T LH AA G V L+ G
Sbjct: 77 DTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHG 136
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGHKGIA 683
A D + G+T D++ G++ +A
Sbjct: 137 A------DVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G LH AA G+ +E AG ++N +D +G+T LH AA G V L+ G
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 124
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGHKGIA 683
A D + G+TP DLA GH+ IA
Sbjct: 125 A------DVNAQDKFGKTPFDLAIREGHEDIA 150
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G LH AA G+ +E AG ++N +D +G+T LH AA G V L+ G
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGH 679
A D K G TP LA+ GH
Sbjct: 92 A------DVNAKDKDGYTPLHLAAREGH 113
Score = 37.4 bits (85), Expect = 0.040, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 602 AAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPT 661
AA G D + G ++N +D +G+T LH AA G V L+ GA D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA------DVN 62
Query: 662 PKYPSGRTPADLASSIGH 679
K G TP LA+ GH
Sbjct: 63 AKDKDGYTPLHLAAREGH 80
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 800 EPVHAAATRIQNKFRSWKGRKDFLIIRKQIIKIQAYVRGHQVR 842
+ + AA RIQ R W RK ++ +R+ I IQ YVRGHQ R
Sbjct: 765 DKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQAR 807
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 595 GQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAP 654
G+ LH AA G+ ++ AG ++N +D NG T LH AA G V L+ GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-- 59
Query: 655 GALSDPTPKYPSGRTPADLASSIGH 679
D K +GRTP LA+ GH
Sbjct: 60 ----DVNAKDKNGRTPLHLAARNGH 80
Score = 37.4 bits (85), Expect = 0.046, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 33/70 (47%)
Query: 583 EGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRER 642
E G D G+ LH AA G+ ++ AG ++N +D NG T LH AA G
Sbjct: 23 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 82
Query: 643 TVASLIALGA 652
V L+ GA
Sbjct: 83 VVKLLLEAGA 92
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 595 GQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAP 654
G LH AAA GY L+ A ++N +D +GWT LH AA+ G+E L+
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE----- 253
Query: 655 GALSDPTPKYPSGRTPADLASSIGHKGIAGY 685
L D G+T D+A + I GY
Sbjct: 254 -NLCDMEAVNKVGQTAFDVAD----EDILGY 279
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 618 GVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADL 673
G NIN D GW LH AA CG LI+ GA GA++ G TP D+
Sbjct: 96 GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVN------SEGDTPLDI 145
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G LH AA G+ +E AG ++N +D +G+T LH AA G V L+ G
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 124
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGHKGIA 683
A D + G+TP DLA G++ IA
Sbjct: 125 A------DVNAQDKFGKTPFDLAIDNGNEDIA 150
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G LH AA G+ +E AG ++N +D +G+T LH AA G V L+ G
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGH 679
A D K G TP LA+ GH
Sbjct: 92 A------DVNAKDKDGYTPLHLAAREGH 113
Score = 37.4 bits (85), Expect = 0.043, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 602 AAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPT 661
AA G D + G ++N +D +G+T LH AA G V L+ GA D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA------DVN 62
Query: 662 PKYPSGRTPADLASSIGH 679
K G TP LA+ GH
Sbjct: 63 AKDKDGYTPLHLAAREGH 80
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 583 EGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRER 642
E G D G+ LH AA G+ ++ G ++N +D +G T LH AA G +
Sbjct: 25 ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE 84
Query: 643 TVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGI 682
V LI+ GA D K GRTP A+ GHK +
Sbjct: 85 VVKLLISKGA------DVNAKDSDGRTPLHHAAENGHKEV 118
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G+ LH AA G+ ++ G ++N +D +G T LH AA G + V LI+ G
Sbjct: 67 DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG 126
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGHKGI 682
A D GRTP DLA G++ +
Sbjct: 127 A------DVNTSDSDGRTPLDLAREHGNEEV 151
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G LH AA G+ +E AG ++N +D +G+T LH AA G V L+ G
Sbjct: 44 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 103
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGH 679
A D K G TP LA+ GH
Sbjct: 104 A------DVNAKDKDGYTPLHLAAREGH 125
Score = 37.7 bits (86), Expect = 0.029, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G LH AA G+ +E AG ++N +D +G+T LH AA G V L+ G
Sbjct: 77 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 136
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGHKGIA 683
A D + G+T D++ G++ +A
Sbjct: 137 A------DVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 37.4 bits (85), Expect = 0.043, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 602 AAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPT 661
AA G D + G ++N +D +G+T LH AA G V L+ GA D
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA------DVN 74
Query: 662 PKYPSGRTPADLASSIGH 679
K G TP LA+ GH
Sbjct: 75 AKDKDGYTPLHLAAREGH 92
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 583 EGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRER 642
E G P +L + L A+ GY + V+IN D NG T L +A + +
Sbjct: 57 EWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVK 116
Query: 643 TVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGI 682
V +L+A GA D T + SG TP DLA ++G++ +
Sbjct: 117 CVEALLARGA------DLTTEADSGYTPMDLAVALGYRKV 150
>pdb|2IX7|C Chain C, Structure Of Apo-Calmodulin Bound To Unconventional Myosin
V
Length = 58
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 800 EPVHAAATRIQNKFRSWKGRKDFLIIRKQIIKIQAYVRGHQVR 842
+ + AA RIQ R W RK +L +++ I +Q YVRG+Q R
Sbjct: 2 DKLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQAR 44
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 602 AAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPT 661
AA G D + G ++N RD GWT LH AA+ G V L+ GA D
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGA------DVN 74
Query: 662 PKYPSGRTPADLASSIGH 679
K G TP LA+ GH
Sbjct: 75 AKDSLGVTPLHLAARRGH 92
Score = 37.0 bits (84), Expect = 0.052, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G LH AA G+ +E G ++N +D G T LH AA G V L+ G
Sbjct: 44 DFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNG 103
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGH 679
A D G TP LA+ GH
Sbjct: 104 A------DVNASDSHGFTPLHLAAKRGH 125
Score = 34.3 bits (77), Expect = 0.31, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G LH AA G+ +E G ++N D +G+T LH AA G V L+ G
Sbjct: 77 DSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNG 136
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGHKGIA 683
A D + G+T D++ G++ +A
Sbjct: 137 A------DVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 599 LHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALS 658
LH+A + G+ +E GV +N +D GW+ LH AA GR+ V +L+ GA A++
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVN 103
Query: 659 DPTPKYPSGRTPADLASSIGHKGIA 683
+G TP A+S IA
Sbjct: 104 Q------NGCTPLHYAASKNRHEIA 122
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G LH AA+ G D ++ G +N + NG T LH+AA R L+ G
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 652 AAPGA 656
A P A
Sbjct: 130 ANPDA 134
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 599 LHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALS 658
LH+A + G+ +E GV +N +D GW+ LH AA GR+ V +L+ GA A++
Sbjct: 45 LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVN 104
Query: 659 DPTPKYPSGRTPADLASS 676
+G TP A+S
Sbjct: 105 Q------NGCTPLHYAAS 116
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G LH AA+ G D ++ G +N + NG T LH+AA R L+ G
Sbjct: 71 DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 130
Query: 652 AAPGA 656
A P A
Sbjct: 131 ANPDA 135
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 599 LHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALS 658
LH+A + G+ +E GV +N +D GW+ LH AA GR+ V +L+ GA A++
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVN 103
Query: 659 DPTPKYPSGRTPADLASSIGHKGIA 683
+G TP A+S IA
Sbjct: 104 Q------NGCTPLHYAASKNRHEIA 122
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G LH AA+ G D ++ V G ++N + NG T LH+AA R L+ G
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 652 AAPGA 656
A P A
Sbjct: 130 ANPDA 134
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 602 AAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPT 661
AA G D + G ++N DV GWT LH AAY G V L+ GA A
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDT-- 78
Query: 662 PKYPSGRTPADLASSIGH 679
G TP LA+ GH
Sbjct: 79 ----LGSTPLHLAAHFGH 92
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G LH AA G+ +E G ++N D G T LH AA+ G V L+ G
Sbjct: 44 DVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNG 103
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGH 679
A D K +G TP LA++ GH
Sbjct: 104 A------DVNAKDDNGITPLHLAANRGH 125
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G LH AA G+ +E G ++N +D NG T LH AA G V L+ G
Sbjct: 77 DTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYG 136
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGHKGIA 683
A D + G+T D++ + G++ +A
Sbjct: 137 A------DVNAQDKFGKTAFDISINNGNEDLA 162
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 595 GQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAP 654
G LH A G+ ++ GVN+N D +GWT LH AA C + L+ GAA
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Query: 655 GALSDPTPKYPSGRTPAD 672
A++ Y +T AD
Sbjct: 130 FAMT-----YSDMQTAAD 142
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 591 LDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIAL 650
+D+ G LH AA G+ +E G +++ DV G+T LH AA G V L+
Sbjct: 43 VDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKY 102
Query: 651 GAAPGALSDPTPKYPSGRTPADLASSIGH 679
GA A +G TP LA+ GH
Sbjct: 103 GADVNAFD------MTGSTPLHLAADEGH 125
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 599 LHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALS 658
LH AA G+ +E G ++N D+ G T LH AA G V L+ GA
Sbjct: 84 LHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA------ 137
Query: 659 DPTPKYPSGRTPADLASSIGHKGIA 683
D + G+T D++ G++ +A
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 602 AAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPT 661
AA G D + G ++N D G T LH AA G V L+ GA D
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD----VDAA 76
Query: 662 PKYPSGRTPADLASSIGH 679
Y G TP LA+ GH
Sbjct: 77 DVY--GFTPLHLAAMTGH 92
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 595 GQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAP 654
G LH A G+ ++ GVN+N D +GWT LH AA C + L+ GAA
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Query: 655 GALSDPTPKYPSGRTPAD 672
A++ Y +T AD
Sbjct: 130 FAMT-----YSDMQTAAD 142
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
DH G LH AA G+ +E G ++N D G T LH AA G V L+ G
Sbjct: 44 DHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNG 103
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGH 679
A D +G TP LA++IGH
Sbjct: 104 A------DVNANDHNGFTPLHLAANIGH 125
Score = 38.1 bits (87), Expect = 0.027, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 602 AAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPT 661
AA G D + G ++N D GWT LH AAY G V L+ GA D
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGA------DVN 74
Query: 662 PKYPSGRTPADLASSIGH 679
G TP LA+ GH
Sbjct: 75 ADDSLGVTPLHLAADRGH 92
Score = 37.4 bits (85), Expect = 0.043, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G LH AA G+ +E G ++N D NG+T LH AA G V L+ G
Sbjct: 77 DSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHG 136
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGHKGIA 683
A D + G+T D++ G++ +A
Sbjct: 137 A------DVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 602 AAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPT 661
AA G D + G ++N D +GWT LH AA+ G V L+ GA A+
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDH-- 78
Query: 662 PKYPSGRTPADLASSIGH 679
+G TP LA+ GH
Sbjct: 79 ----AGMTPLRLAALFGH 92
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D+ G LH AA G+ +E G +++ DV G+T LH AAY G V L+ G
Sbjct: 44 DNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNG 103
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGH 679
A A+ G TP LA+ G+
Sbjct: 104 ADVNAMDS------DGMTPLHLAAKWGY 125
Score = 33.5 bits (75), Expect = 0.53, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 602 AAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPT 661
AA G D + G ++N D G T LH AAY G V L+ GA D
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA------DVD 74
Query: 662 PKYPSGRTPADLASSIGH 679
G TP LA+ GH
Sbjct: 75 ASDVFGYTPLHLAAYWGH 92
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G LH AA G+ +E G ++N D +G T LH AA G V L+ G
Sbjct: 77 DVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHG 136
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGHKGIA 683
A D + G+T D++ G++ +A
Sbjct: 137 A------DVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 583 EGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRER 642
E G P +L + L A+ GY + V+IN D NG T L +A +
Sbjct: 57 EWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVK 116
Query: 643 TVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGI 682
V +L+A GA D T + SG TP DLA ++G++ +
Sbjct: 117 CVEALLARGA------DLTTEADSGYTPMDLAVALGYRKV 150
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 583 EGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRER 642
+ G P +L + L A + GY ++ GV++N D NG T L +A + +
Sbjct: 73 QNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVK 132
Query: 643 TVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGI 682
V L+ GA DPT + SG DLA ++G++ +
Sbjct: 133 CVKMLLESGA------DPTIETDSGYNSMDLAVALGYRSV 166
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D+ G LH AA+ G+ +E G ++N D+ G T LH AA G V L+ G
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHG 103
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGH 679
A A + G TP LA+ GH
Sbjct: 104 ADVNAYDN------DGHTPLHLAAKYGH 125
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 602 AAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPT 661
AA G D + G ++N D +G+T LH AA G V L+ GA A SD T
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNA-SDLT 79
Query: 662 PKYPSGRTPADLASSIGH 679
G TP LA++ GH
Sbjct: 80 -----GITPLHLAAATGH 92
Score = 34.7 bits (78), Expect = 0.30, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G LH AAA G+ +E G ++N D +G T LH AA G V L+ G
Sbjct: 77 DLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHG 136
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGHKGIA 683
A D + G+T D++ G++ +A
Sbjct: 137 A------DVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 583 EGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRER 642
+ G P +L + L A + GY ++ GV++N D NG T L +A + +
Sbjct: 55 QNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVK 114
Query: 643 TVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGI 682
V L+ GA DPT + SG DLA ++G++ +
Sbjct: 115 CVKMLLESGA------DPTIETDSGYNSMDLAVALGYRSV 148
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 583 EGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRER 642
+ G P +L + L A + GY ++ GV++N D NG T L +A + +
Sbjct: 57 QNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVK 116
Query: 643 TVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGI 682
V L+ GA DPT + SG DLA ++G++ +
Sbjct: 117 CVKMLLESGA------DPTIETDSGYNSMDLAVALGYRSV 150
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G LH AA+ G D ++ V G ++N + NG T LH+AA R L+ G
Sbjct: 70 DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 652 AAPGA 656
A P A
Sbjct: 130 ANPDA 134
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 599 LHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALS 658
LH+A + G+ +E GV +N +D GW+ LH AA G + V +L+ GA A++
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVN 103
Query: 659 DPTPKYPSGRTPADLASSIGHKGIA 683
+G TP A+S IA
Sbjct: 104 Q------NGCTPLHYAASKNRHEIA 122
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G LH AA G+ +E G ++N D+ G T LH AA G V L+ G
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHG 103
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGH 679
A A+ G TP LA+ +GH
Sbjct: 104 ADVNAVDT------WGDTPLHLAAIMGH 125
Score = 36.2 bits (82), Expect = 0.094, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 602 AAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPT 661
AA G D + G ++N D +G T LH AA G V L+ GA A+
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID--- 77
Query: 662 PKYPSGRTPADLASSIGH 679
G TP LA+ IGH
Sbjct: 78 ---IXGSTPLHLAALIGH 92
Score = 33.9 bits (76), Expect = 0.51, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 591 LDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIAL 650
+D G LH AA +G+ +E G ++N D G T LH AA G V L+
Sbjct: 76 IDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Query: 651 GAAPGALSDPTPKYPSGRTPADLASSIGHKGIA 683
GA D + G+T D++ G++ +A
Sbjct: 136 GA------DVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D+ G LH AA G+ +E G ++N +D G+T LH AAY G V L+ G
Sbjct: 77 DNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYG 136
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGHKGIA 683
A D + G+T D++ G++ +A
Sbjct: 137 A------DVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G LH AA G+ +E G ++N D G T LH AA G V L+ G
Sbjct: 44 DWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHG 103
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGH 679
A D K G TP LA+ GH
Sbjct: 104 A------DVNAKDYEGFTPLHLAAYDGH 125
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 602 AAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPT 661
AA G D + G ++N D G T LH AA G V L+ GA A +
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDN-- 78
Query: 662 PKYPSGRTPADLASSIGH 679
G TP LA+ GH
Sbjct: 79 ----YGATPLHLAADNGH 92
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 39.7 bits (91), Expect = 0.009, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 599 LHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALS 658
LH G+ +E ++N D +GWT LH AAY G V L+ GA A+
Sbjct: 51 LHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMD 110
Query: 659 DPTPKYPSGRTPADLASSIGH 679
G TP LA+ GH
Sbjct: 111 ------YQGYTPLHLAAEDGH 125
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G LH AA G+ +E G ++N D G+T LH AA G V L+ G
Sbjct: 77 DKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYG 136
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGHKGIA 683
A D + G+T D++ G++ +A
Sbjct: 137 A------DVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G LH AA G+ +E G ++N D+ G T LH AA G V L+ G
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHG 103
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGH 679
A A+ G TP LA+ +GH
Sbjct: 104 ADVNAVDT------WGDTPLHLAAIMGH 125
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 602 AAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPT 661
AA G D + G ++N D +G T LH AA G V L+ GA A+
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID--- 77
Query: 662 PKYPSGRTPADLASSIGH 679
G TP LA+ IGH
Sbjct: 78 ---IMGSTPLHLAALIGH 92
Score = 33.9 bits (76), Expect = 0.42, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 591 LDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIAL 650
+D G LH AA +G+ +E G ++N D G T LH AA G V L+
Sbjct: 76 IDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Query: 651 GAAPGALSDPTPKYPSGRTPADLASSIGHKGIA 683
GA D + G+T D++ G++ +A
Sbjct: 136 GA------DVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 39.3 bits (90), Expect = 0.012, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 591 LDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDV-NGWTALHWAAYCGRERTVASLIA 649
+D G+ L F A LG D + AG +++ RD+ G TALH AA R V +L+
Sbjct: 72 VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE 131
Query: 650 LGA 652
LGA
Sbjct: 132 LGA 134
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 39.3 bits (90), Expect = 0.012, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 591 LDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDV-NGWTALHWAAYCGRERTVASLIA 649
+D G+ L F A LG D + AG +++ RD+ G TALH AA R V +L+
Sbjct: 73 VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE 132
Query: 650 LGA 652
LGA
Sbjct: 133 LGA 135
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 591 LDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIAL 650
+D G LH AA G+ +E G ++N RD+ G T LH AA G V L+
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEY 102
Query: 651 GAAPGALSDPTPKYPSGRTPADLASSIGHKGIA 683
GA D + G+T D++ G++ +A
Sbjct: 103 GA------DVNAQDKFGKTAFDISIDNGNEDLA 129
Score = 34.3 bits (77), Expect = 0.38, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 602 AAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPT 661
A G D + G ++N D G T LH AA G V L+ GA D
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA------DVN 74
Query: 662 PKYPSGRTPADLASSIGH 679
+ GRTP LA+++GH
Sbjct: 75 ARDIWGRTPLHLAATVGH 92
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 38.9 bits (89), Expect = 0.015, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G LH AA +G+ +E G ++N D +G T LH AA G V L+ G
Sbjct: 44 DTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYG 103
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGH 679
A A D T G TP LA+ GH
Sbjct: 104 ADVNA--DDT----IGSTPLHLAADTGH 125
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 591 LDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIAL 650
LD G LH AA G+ +E G ++N D G T LH AA G V L+
Sbjct: 76 LDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKY 135
Query: 651 GAAPGALSDPTPKYPSGRTPADLASSIGHKGIA 683
GA D + G+T D++ G++ +A
Sbjct: 136 GA------DVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 35.0 bits (79), Expect = 0.23, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 602 AAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPT 661
AA G D + G ++N D G T LH AA G V L+ GA AL
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDF-- 78
Query: 662 PKYPSGRTPADLASSIGH 679
SG TP LA+ GH
Sbjct: 79 ----SGSTPLHLAAKRGH 92
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 617 AGVNINFRDV-NGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLAS 675
G N+NF++ GWT LH A RE V L+ GA DP + +G TP LA+
Sbjct: 47 GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA------DPVLRKKNGATPFILAA 100
Query: 676 SIG 678
G
Sbjct: 101 IAG 103
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 36.6 bits (83), Expect = 0.064, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G+ LH AA G+ +E G ++N D G T LH AA G V L+ G
Sbjct: 44 DDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNG 103
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGH 679
A A T Y G TP LA+ GH
Sbjct: 104 ADVNA----TDTY--GFTPLHLAADAGH 125
Score = 36.6 bits (83), Expect = 0.075, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G LH AA G+ +E G ++N D G+T LH AA G V L+ G
Sbjct: 77 DKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYG 136
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGHKGIA 683
A D + G+T D++ G++ +A
Sbjct: 137 A------DVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 602 AAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPT 661
AA G D + G ++N D +G T LH AA G V L+ GA D
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGA------DVN 74
Query: 662 PKYPSGRTPADLASSIGH 679
G TP LA+ GH
Sbjct: 75 AADKMGDTPLHLAALYGH 92
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 36.6 bits (83), Expect = 0.068, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G LH AA G+ +E G ++N D GWT LH AA G+ V L+ G
Sbjct: 69 DSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHG 128
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGHKGIA 683
A D + G T D++ + G + +A
Sbjct: 129 A------DVNAQDALGLTAFDISINQGQEDLA 154
Score = 36.2 bits (82), Expect = 0.100, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 602 AAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPT 661
AAA G D + G ++N D NG T LH AA G+ V L+ GA D
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGA------DVN 66
Query: 662 PKYPSGRTPADLASSIGH 679
+G TP LA+ GH
Sbjct: 67 ASDSAGITPLHLAAYDGH 84
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G LH AAA G +E G ++N D G T LH AAY G V L+ G
Sbjct: 36 DDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHG 95
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGH 679
A A +G TP LA+ G
Sbjct: 96 ADVNAYDR------AGWTPLHLAALSGQ 117
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 36.6 bits (83), Expect = 0.074, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 617 AGVNINFRDVNG-WTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLAS 675
G N+NF++ G WT LH A RE V L+ GA DP + +G TP LA+
Sbjct: 27 GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA------DPVLRKKNGATPFLLAA 80
Query: 676 SIG 678
G
Sbjct: 81 IAG 83
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 36.2 bits (82), Expect = 0.091, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 591 LDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIAL 650
+D G LH AA G+ +E G ++N D+ G T LH AA G V L+
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEY 102
Query: 651 GAAPGALSDPTPKYPSGRTPADLASSIGHKGIA 683
GA D + G+T D++ G++ +A
Sbjct: 103 GA------DVNAQDKFGKTAFDISIDNGNEDLA 129
Score = 33.1 bits (74), Expect = 0.81, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 602 AAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPT 661
A G D + G ++N D G T LH AA G V L+ GA D
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA------DVN 74
Query: 662 PKYPSGRTPADLASSIGH 679
GRTP LA+++GH
Sbjct: 75 ASDIWGRTPLHLAATVGH 92
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 36.2 bits (82), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%)
Query: 599 LHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGA 652
LH AA+ G+ +E G ++N +D+ TALHWA + V LI GA
Sbjct: 71 LHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA 124
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 599 LHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALS 658
LH AA ++ +E G +N D G TALH AA G +T L++ G+ P +S
Sbjct: 251 LHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIIS 310
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 591 LDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIAL 650
LD G LH AA LG+ +E G ++N D G T LH AA G V L+
Sbjct: 43 LDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKH 102
Query: 651 GAAPGALSDPTPKYPSGRTPADLASSIGHKGIA 683
GA D + G+T D++ G++ +A
Sbjct: 103 GA------DVNAQDKFGKTAFDISIDNGNEDLA 129
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 602 AAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPT 661
AA G D + G ++N D +G T LH AA G V L+ GA D
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA------DVN 74
Query: 662 PKYPSGRTPADLASSIGH 679
+ G TP LA+ GH
Sbjct: 75 AEDNFGITPLHLAAIRGH 92
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 585 GKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAY 637
G P ++D G +H AA G+ + G +++ D NG T L WAAY
Sbjct: 99 GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAY 151
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 630 TALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGY 685
T LHWA G V L+ GA DP+ G + LA+ GH I Y
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYGA------DPSLIDGEGCSCIHLAAQFGHTSIVAY 127
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 617 AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAA 653
AG N+N D +GWT LH AA C +L+ GAA
Sbjct: 76 AGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAA 112
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 34.7 bits (78), Expect = 0.24, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 602 AAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPT 661
AA G D + T G ++N D G T LH AA G V L+ GA A +
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGN-- 78
Query: 662 PKYPSGRTPADLASSIGH 679
+GRTP LA+ H
Sbjct: 79 ----TGRTPLHLAAWADH 92
Score = 33.5 bits (75), Expect = 0.58, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D+ G LH AA LG+ +E G ++N G T LH AA+ V L+ G
Sbjct: 44 DYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHG 103
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGHKGIA 683
A D + G+T D++ G++ +A
Sbjct: 104 A------DVNAQDKFGKTAFDISIDNGNEDLA 129
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 34.3 bits (77), Expect = 0.31, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G LH A + G+ E G +N D+ +T LH AA G+ L+ G
Sbjct: 76 DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG 135
Query: 652 AAPGALSDPTPKYPSGRTPADL 673
A DPT K G TP DL
Sbjct: 136 A------DPTKKNRDGNTPLDL 151
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 34.3 bits (77), Expect = 0.33, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G LH A + G+ E G +N D+ +T LH AA G+ L+ G
Sbjct: 72 DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG 131
Query: 652 AAPGALSDPTPKYPSGRTPADL 673
A DPT K G TP DL
Sbjct: 132 A------DPTKKNRDGNTPLDL 147
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 34.3 bits (77), Expect = 0.33, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 591 LDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIAL 650
+D G LH AA G+ +E G ++N D G T LH AA G V L+
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEY 102
Query: 651 GAAPGALSDPTPKYPSGRTPADLASSIGHKGIA 683
GA D + G+T D++ G++ +A
Sbjct: 103 GA------DVNAQDKFGKTAFDISIDNGNEDLA 129
Score = 33.9 bits (76), Expect = 0.50, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 602 AAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPT 661
A G D + G ++N D G T LH AA G V L+ GA D
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA------DVN 74
Query: 662 PKYPSGRTPADLASSIGH 679
GRTP LA+++GH
Sbjct: 75 ASDSWGRTPLHLAATVGH 92
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 34.3 bits (77), Expect = 0.34, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G LH A + G+ E G +N D+ +T LH AA G+ L+ G
Sbjct: 74 DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG 133
Query: 652 AAPGALSDPTPKYPSGRTPADL 673
A DPT K G TP DL
Sbjct: 134 A------DPTKKNRDGNTPLDL 149
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 620 NINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGH 679
++N D +G++ LHWA GR V LI GA ++ TP LA+S GH
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMN------RGDDTPLHLAASHGH 84
Query: 680 KGIA 683
+ I
Sbjct: 85 RDIV 88
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 599 LHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALS 658
LH AA+ G+ ++ +IN + +G LH+A + G+++ L+ A GAL
Sbjct: 76 LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV----ANGALV 131
Query: 659 DPTPKYPSGRTPADLASS 676
KY G P D A +
Sbjct: 132 SICNKY--GEMPVDKAKA 147
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 620 NINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGH 679
++N D +G++ LHWA GR V LI GA ++ TP LA+S GH
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMN------RGDDTPLHLAASHGH 79
Query: 680 KGIA 683
+ I
Sbjct: 80 RDIV 83
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 599 LHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALS 658
LH AA+ G+ ++ +IN + +G LH+A + G+++ L+ A GAL
Sbjct: 71 LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV----ANGALV 126
Query: 659 DPTPKYPSGRTPADLASS 676
KY G P D A +
Sbjct: 127 SICNKY--GEMPVDKAKA 142
>pdb|3K5L|A Chain A, Crystal Structure Of E.Coli Pol Ii-Abasic Dna-Datp Lt(0,
3) Ternary Complex
pdb|3K5M|A Chain A, Crystal Structure Of E.Coli Pol Ii-Abasic Dna-Ddgtp Lt(-2,
2) Ternary Complex
pdb|3K5N|A Chain A, Crystal Structure Of E.Coli Pol Ii-Abasic Dna Binary
Complex
pdb|3K5N|B Chain B, Crystal Structure Of E.Coli Pol Ii-Abasic Dna Binary
Complex
pdb|3K5O|A Chain A, Crystal Structure Of E.Coli Pol Ii
pdb|3K5O|B Chain B, Crystal Structure Of E.Coli Pol Ii
pdb|3K57|A Chain A, Crystal Structure Of E.Coli Pol Ii-Normal Dna-Datp Ternary
Complex
pdb|3K58|A Chain A, Crystal Structure Of E.Coli Pol Ii-Normal Dna-Dttp Ternary
Complex
pdb|3K59|A Chain A, Crystal Structure Of E.Coli Pol Ii-Normal Dna-Dctp Ternary
Complex
pdb|3MAQ|A Chain A, Crystal Structure Of E.coli Pol Ii-normal Dna-dgtp Ternary
Complex
Length = 786
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 26/82 (31%)
Query: 269 PPHAHPNMENDVHEQLPNAEHGHLLKSDP---ESSLTIDGKSFYSSAIKQHLID--GSTE 323
PPHA P G+++ S P +S L +D KS Y S I+ LID G E
Sbjct: 398 PPHASPG--------------GYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVE 443
Query: 324 GLKKLDS-------FNRWMSKE 338
G+ + D + W S+E
Sbjct: 444 GMAQPDPEHSTEGFLDAWFSRE 465
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 33.9 bits (76), Expect = 0.46, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 593 HCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGA 652
H G L AA L + +E A +IN D +G TALHWAA V L+ A
Sbjct: 116 HDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHA 175
Query: 653 APGALSDP--TPKYPSGR 668
A D TP + + R
Sbjct: 176 NRDAQDDKDETPLFLAAR 193
>pdb|1Q8I|A Chain A, Crystal Structure Of Escherichia Coli Dna Polymerase Ii
Length = 783
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 26/82 (31%)
Query: 269 PPHAHPNMENDVHEQLPNAEHGHLLKSDP---ESSLTIDGKSFYSSAIKQHLID--GSTE 323
PPHA P G+++ S P +S L +D KS Y S ++ LID G E
Sbjct: 395 PPHASPG--------------GYVMDSRPGLYDSVLVLDYKSLYPSIVRTFLIDPVGLVE 440
Query: 324 GLKKLDS-------FNRWMSKE 338
G+ + D + W S+E
Sbjct: 441 GMAQPDPEHSTEGFLDAWFSRE 462
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLI 648
+H G+ +LH A+ G ++E G + N +D GWT LH A G + V L+
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL 63
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 32.7 bits (73), Expect = 0.98, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 585 GKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTV 644
G P + D G V+H AA G+ L+ ++N D G LH AA G R V
Sbjct: 60 GANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 645 ASLIALGAAPGALSDPTPKYPSGRTPADLASSIG 678
L+ A S+ + G T DLA G
Sbjct: 120 EFLVKHTA-----SNVGHRNHKGDTACDLARLYG 148
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G L+ A A G+ +E G ++N D G+T LH AA+ G L+ G
Sbjct: 44 DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG 103
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGHKGIA 683
A D + G+T D++ G++ +A
Sbjct: 104 A------DVNAQDKFGKTAFDISIGNGNEDLA 129
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 18/110 (16%)
Query: 627 NGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYX 686
NG+T LH AA + SL+ G + A S G TP LA+ GH +
Sbjct: 211 NGYTPLHIAAKQNQVEVARSLLQYGGSANAESV------QGVTPLHLAAQEGHAEMVAL- 263
Query: 687 XXXXXXXXXXXXXXNKKDGDVAEVTGATAVQTVPQRCPTPVSDGDLPYGL 736
+ +G++ +G T + V Q PV+D + +G+
Sbjct: 264 -----------LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGV 302
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 585 GKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTV 644
G P + D G V+H AA G+ L+ ++N D G LH AA G R V
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 645 ASLIALGAAPGALSDPTPKYPSGRTPADLASSIG 678
L+ A S+ + G T DLA G
Sbjct: 120 EFLVKHTA-----SNVGHRNHKGDTACDLARLYG 148
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 37/87 (42%), Gaps = 16/87 (18%)
Query: 583 EGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRER 642
EGG+ P LH+AA G LE + G +IN D + T L A Y G
Sbjct: 33 EGGRKP----------LHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS 82
Query: 643 TVASLIALGAAPGALSDPTPKYPSGRT 669
V L++ GA D T K P G T
Sbjct: 83 CVKLLLSKGA------DKTVKGPDGLT 103
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 585 GKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTV 644
G P + D G V+H AA G+ L+ ++N D G LH AA G R V
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 645 ASLIALGAAPGALSDPTPKYPSGRTPADLASSIG 678
L+ A S+ + G T DLA G
Sbjct: 120 EFLVKHTA-----SNVGHRNHKGDTACDLARLYG 148
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 37/87 (42%), Gaps = 16/87 (18%)
Query: 583 EGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRER 642
EGG+ P LH+AA G LE + G +IN D + T L A Y G
Sbjct: 38 EGGRKP----------LHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS 87
Query: 643 TVASLIALGAAPGALSDPTPKYPSGRT 669
V L++ GA D T K P G T
Sbjct: 88 CVKLLLSKGA------DKTVKGPDGLT 108
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 585 GKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTV 644
G P + D G V+H AA G+ L+ ++N D G LH AA G R V
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 645 ASLIALGAAPGALSDPTPKYPSGRTPADLASSIG 678
L+ A S+ + G T DLA G
Sbjct: 120 EFLVKHTA-----SNVGHRNHKGDTACDLARLYG 148
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 602 AAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPT 661
AA G D + G ++N +D +G+T LH AA G V L+ GA D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA------DVN 62
Query: 662 PKYPSGRTPADLASSIGHKGIA 683
+ G+T D++ G++ +A
Sbjct: 63 AQDKFGKTAFDISIDNGNEDLA 84
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G LH AA + +E G ++N D +G T LH AA G V L+ G
Sbjct: 44 DRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHG 103
Query: 652 AAPGALSDPTPKYPSGRTPADLASSIGHKGIA 683
A D + G+T D++ G++ +A
Sbjct: 104 A------DVNAQDKFGKTAFDISIDNGNEDLA 129
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 30.4 bits (67), Expect = 5.5, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 595 GQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAP 654
GQ LH AA LG +E AG + + G TALH A R T A +
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRV-RAHTCACV------- 96
Query: 655 GALSDPTPKYPSGRTPADLASS 676
L P P +P + L S
Sbjct: 97 --LLQPRPSHPRDASDTYLTQS 116
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 30.4 bits (67), Expect = 5.5, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 595 GQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAP 654
GQ LH AA LG +E AG + + G TALH A R T A +
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRV-RAHTCACV------- 96
Query: 655 GALSDPTPKYPSGRTPADLASS 676
L P P +P + L S
Sbjct: 97 --LLQPRPSHPRDASDTYLTQS 116
>pdb|2KW0|A Chain A, Solution Structure Of N-Terminal Domain Of Ccmh From
Escherichia.Coli
Length = 90
Score = 30.0 bits (66), Expect = 7.0, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 873 KSETLTASSSMVATSAKEDDYDFLKEGRKQKEERLQKALARVKSMVQY 920
++ ++ S+SM+AT ++ Y+ ++EG K K+E + +AR + V Y
Sbjct: 30 QNNSIADSNSMIATDLRQKVYELMQEG-KSKKEIVDYMVARYGNFVTY 76
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 29.6 bits (65), Expect = 8.2, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 592 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 651
D G+ L ++ GY G N+N R++ G T L A+ GR V L+ LG
Sbjct: 98 DFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELG 157
Query: 652 A 652
A
Sbjct: 158 A 158
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 29.6 bits (65), Expect = 8.9, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Query: 585 GKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTV 644
G P + D G V+H AA G L+ ++N D G LH AA G R V
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 645 ASLIALGAAPGALSDPTPKYPSGRTPADLASSIG 678
L+ A S+ + G T DLA G
Sbjct: 120 EFLVKHTA-----SNVGHRNHKGDTACDLARLYG 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,216,672
Number of Sequences: 62578
Number of extensions: 1137698
Number of successful extensions: 2657
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2449
Number of HSP's gapped (non-prelim): 196
length of query: 974
length of database: 14,973,337
effective HSP length: 108
effective length of query: 866
effective length of database: 8,214,913
effective search space: 7114114658
effective search space used: 7114114658
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)