BLAST Results

Query Summary

Your job contains 1 sequence.
Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on
Query Sequence

>002054
MSSLATKTHPLLNNLPPFLTWRALGFRTICSGRLGFAPCEPAPPTPAPSVAGTKVLETFK
EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQ
FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD
IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL
MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS
NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI
RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL
ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV
RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL
TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME
REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSDGTLTVVA
KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP
VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVPVNKQATDVW
ASVGDVSNGQNPELPMRKNETPGVNSSTSSTPAVLIRSAAECDEEEKASGFSQSSKSTLK
STLASKSNSKPKKFTSQSDFFSSTNIQKSTSFSQREREELAECLFGTEDGDEDNKGTRVE
AIVSAKNLKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNEKKDFVVGDELLVKCSS
FTGKGIPVVSLVDS
High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT5G14580 AT5G14580 AT5G14580	protein from Arabidopsis thaliana	0.
BLAST match view associations BLAST with pnp pnp pnp Polyribonucleotide nucleotidyltransferase	protein from Bacillus subtilis subsp. subtilis str. 168	8.2e-138
BLAST match view associations BLAST with CHY_1758 CHY_1758 CHY_1758 polyribonucleotide nucleotidyltransferase	protein from Carboxydothermus hydrogenoformans Z-2901	1.2e-136
BLAST match view associations BLAST with GSU_1593 GSU_1593 GSU_1593 polyribonucleotide nucleotidyltransferase	protein from Geobacter sulfurreducens PCA	4.0e-136
BLAST match view associations BLAST with pnp pnp pnp Polyribonucleotide nucleotidyltransferase	protein from Hyphomonas neptunium ATCC 15444	6.0e-135
BLAST match view associations BLAST with pnp pnp pnp polynucleotide phosphorylase monomer	protein from Escherichia coli K-12	4.8e-133
BLAST match view associations BLAST with BA_3944 BA_3944 BA_3944 polyribonucleotide nucleotidyltransferase	protein from Bacillus anthracis str. Ames	2.7e-132
BLAST match view associations BLAST with SO_1209 SO_1209 SO_1209 polyribonucleotide nucleotidyltransferase	protein from Shewanella oneidensis MR-1	5.7e-130
BLAST match view associations BLAST with PNPT1 PNPT1 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial	protein from Homo sapiens	1.4e-128
BLAST match view associations BLAST with PNPT1 PNPT1 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial	protein from Pongo abelii	7.6e-128
BLAST match view associations BLAST with PNPT1 PNPT1 PNPT1 Uncharacterized protein	protein from Bos taurus	2.0e-127
BLAST match view associations BLAST with CPS_2207 CPS_2207 CPS_2207 polyribonucleotide nucleotidyltransferase	protein from Colwellia psychrerythraea 34H	2.6e-127
BLAST match view associations BLAST with pnp pnp pnp Polyribonucleotide nucleotidyltransferase	protein from Pseudoalteromonas haloplanktis TAC125	6.8e-127
BLAST match view associations BLAST with Pnpt1 Pnpt1 Pnpt1 polyribonucleotide nucleotidyltransferase 1	protein from Mus musculus	8.7e-127
BLAST match view associations BLAST with CBU_0852 CBU_0852 CBU_0852 polyribonucleotide nucleotidyltransferase	protein from Coxiella burnetii RSA 493	2.3e-126
BLAST match view associations BLAST with SPO_3389 SPO_3389 SPO_3389 polyribonucleotide nucleotidyltransferase	protein from Ruegeria pomeroyi DSS-3	7.8e-126
BLAST match view associations BLAST with DET_0970 DET_0970 DET_0970 polyribonucleotide nucleotidyltransferase	protein from Dehalococcoides ethenogenes 195	9.1e-126
BLAST match view associations BLAST with pnp pnp pnp Polyribonucleotide nucleotidyltransferase	protein from Vibrio cholerae O1 biovar El Tor str. N16961	2.6e-125
BLAST match view associations BLAST with VC_0647 VC_0647 VC_0647 polyribonucleotide nucleotidyltransferase	protein from Vibrio cholerae O1 biovar El Tor	2.6e-125
BLAST match view associations BLAST with pnp pnp pnp Polyribonucleotide nucleotidyltransferase	protein from Anaplasma phagocytophilum HZ	1.7e-121
BLAST match view associations BLAST with APH_0767 APH_0767 APH_0767 polyribonucleotide nucleotidyltransferase	protein from Anaplasma phagocytophilum HZ	1.7e-121
BLAST match view associations BLAST with ECH_0726 ECH_0726 ECH_0726 polyribonucleotide nucleotidyltransferase	protein from Ehrlichia chaffeensis str. Arkansas	5.2e-120
BLAST match view associations BLAST with CG11337 CG11337 CG11337	protein from Drosophila melanogaster	6.9e-118
BLAST match view associations BLAST with PNPT1 PNPT1 PNPT1 Uncharacterized protein	protein from Gallus gallus	1.4e-117
BLAST match view associations BLAST with PNPT1 PNPT1 PNPT1 Uncharacterized protein	protein from Canis lupus familiaris	7.3e-114
BLAST match view associations BLAST with RIF10 RIF10 RIF10 AT3G03710	protein from Arabidopsis thaliana	1.2e-108
BLAST match view associations BLAST with pnp pnp pnp Polyribonucleotide nucleotidyltransferase	protein from Mycobacterium tuberculosis	1.0e-107
BLAST match view associations BLAST with CJE_1390 CJE_1390 CJE_1390 polyribonucleotide nucleotidyltransferase	protein from Campylobacter jejuni RM1221	1.3e-99
BLAST match view associations BLAST with NSE_0057 NSE_0057 NSE_0057 polyribonucleotide nucleotidyltransferase	protein from Neorickettsia sennetsu str. Miyayama	2.2e-98
BLAST match view associations BLAST with BE0003N10.1 BE0003N10.1 BE0003N10.1	gene from Caenorhabditis elegans	2.8e-98
BLAST match view associations BLAST with PNPT1 PNPT1 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial	protein from Homo sapiens	4.7e-96
BLAST match view associations BLAST with Pnpt1 Pnpt1 Pnpt1 polyribonucleotide nucleotidyltransferase 1	gene from Rattus norvegicus	7.4e-82
BLAST match view associations BLAST with LOC100737729 LOC100737729 LOC100737729 Uncharacterized protein	protein from Sus scrofa	1.9e-32
BLAST match view associations BLAST with PNPT1 PNPT1 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial	protein from Homo sapiens	3.0e-25
BLAST match view associations BLAST with PNPT1 PNPT1 PNPT1 Uncharacterized protein	protein from Sus scrofa	3.0e-25
BLAST match view associations BLAST with orf19.4582 orf19.4582 orf19.4582	gene_product from Candida albicans	2.2e-13
BLAST match view associations BLAST with PNPT1 PNPT1 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial	protein from Homo sapiens	1.7e-10
BLAST match view associations BLAST with LMOf2365_0229 LMOf2365_0229 LMOf2365_0229 RNA-binding protein	protein from Listeria monocytogenes serotype 4b str. F2365	2.8e-10
BLAST match view associations BLAST with RRP41 RRP41 RRP41 AT3G61620	protein from Arabidopsis thaliana	2.2e-09
BLAST match view associations BLAST with LMOf2365_2340 LMOf2365_2340 LMOf2365_2340 S1 RNA binding domain protein	protein from Listeria monocytogenes serotype 4b str. F2365	1.1e-08
BLAST match view associations BLAST with BAS0060 BAS0060 BAS0060 S1 RNA binding domain protein	protein from Bacillus anthracis	1.1e-08
BLAST match view associations BLAST with BA_0060 BA_0060 BA_0060 S1 RNA binding domain protein	protein from Bacillus anthracis str. Ames	1.1e-08
BLAST match view associations BLAST with Exosc4 Exosc4 Exosc4 exosome component 4	protein from Mus musculus	1.1e-08
BLAST match view associations BLAST with Exosc4 Exosc4 Exosc4 exosome component 4	gene from Rattus norvegicus	2.0e-08
BLAST match view associations BLAST with RPS1 RPS1 RPS1 AT5G30510	protein from Arabidopsis thaliana	2.0e-08
BLAST match view associations BLAST with rpsA rpsA rpsA 30S ribosomal protein S1	protein from Mycobacterium tuberculosis	2.1e-08
BLAST match view associations BLAST with EXOSC4 EXOSC4 EXOSC4 Uncharacterized protein	protein from Canis lupus familiaris	2.7e-08
BLAST match view associations BLAST with BA_1519 BA_1519 BA_1519 ribosomal protein S1	protein from Bacillus anthracis str. Ames	4.7e-08
BLAST match view associations BLAST with EXOSC4 EXOSC4 EXOSC4 Exosome complex component RRP41	protein from Bos taurus	6.2e-08
BLAST match view associations BLAST with EXOSC4 EXOSC4 EXOSC4 Exosome complex component RRP41	protein from Homo sapiens	8.2e-08
BLAST match view associations BLAST with GSU_2603 GSU_2603 GSU_2603 ribosomal protein S1	protein from Geobacter sulfurreducens PCA	1.1e-07
BLAST match view associations BLAST with exosc6 exosc6 exosc6 exosome component 6	gene_product from Danio rerio	1.3e-07
BLAST match view associations BLAST with rph rph rph Ribonuclease PH	protein from Vibrio cholerae O1 biovar El Tor str. N16961	2.1e-07
BLAST match view associations BLAST with VC_0210 VC_0210 VC_0210 ribonuclease PH	protein from Vibrio cholerae O1 biovar El Tor	2.1e-07
BLAST match view associations BLAST with RRP41L RRP41L RRP41L AT4G27490	protein from Arabidopsis thaliana	3.1e-07
BLAST match view associations BLAST with EXOSC4 EXOSC4 EXOSC4 Uncharacterized protein	protein from Sus scrofa	4.3e-07
BLAST match view associations BLAST with BA_4715 BA_4715 BA_4715 ribonuclease PH	protein from Bacillus anthracis str. Ames	5.7e-07
BLAST match view associations BLAST with exos-4.1 exos-4.1 exos-4.1	gene from Caenorhabditis elegans	1.2e-06
BLAST match view associations BLAST with exos-4.1 exos-4.1 exos-4.1 Putative exosome complex component RRP41	protein from Caenorhabditis elegans	1.2e-06
BLAST match view associations BLAST with Ski6 Ski6 Ski6	protein from Drosophila melanogaster	1.3e-06
BLAST match view associations BLAST with GSU_1200 GSU_1200 GSU_1200 ribosomal protein S1	protein from Geobacter sulfurreducens PCA	1.4e-06
BLAST match view associations BLAST with CPS_2335 CPS_2335 CPS_2335 ribosomal protein S1	protein from Colwellia psychrerythraea 34H	1.7e-06
BLAST match view associations BLAST with SO_2402 SO_2402 SO_2402 ribosomal protein S1	protein from Shewanella oneidensis MR-1	2.4e-06
BLAST match view associations BLAST with SKI6 SKI6 SKI6 Exosome non-catalytic core component	gene from Saccharomyces cerevisiae	2.9e-06
BLAST match view associations BLAST with rpsA rpsA rpsA 30S ribosomal subunit protein S1	protein from Escherichia coli K-12	3.3e-06
BLAST match view associations BLAST with exosc4 exosc4 exosc4 exosome component 4	gene_product from Danio rerio	3.7e-06
BLAST match view associations BLAST with CBU_0528 CBU_0528 CBU_0528 ribosomal protein S1	protein from Coxiella burnetii RSA 493	3.9e-06
BLAST match view associations BLAST with BA_5132 BA_5132 BA_5132 general stress protein 13	protein from Bacillus anthracis str. Ames	4.1e-06
BLAST match view associations BLAST with APH_0273 APH_0273 APH_0273 ribosomal protein S1	protein from Anaplasma phagocytophilum HZ	1.1e-05
BLAST match view associations BLAST with HNE_2386 HNE_2386 HNE_2386 S1 RNA binding domain protein	protein from Hyphomonas neptunium ATCC 15444	2.2e-05
BLAST match view associations BLAST with VC_1915 VC_1915 VC_1915 30S ribosomal protein S1	protein from Vibrio cholerae O1 biovar El Tor str. N16961	2.8e-05
BLAST match view associations BLAST with VC_1915 VC_1915 VC_1915 ribosomal protein S1	protein from Vibrio cholerae O1 biovar El Tor	2.8e-05
BLAST match view associations BLAST with mog-5 mog-5 mog-5	gene from Caenorhabditis elegans	3.0e-05
BLAST match view associations BLAST with mog-5 mog-5 mog-5 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5	protein from Caenorhabditis elegans	3.0e-05
BLAST match view associations BLAST with rph rph rph Ribonuclease PH	protein from Bacillus subtilis subsp. subtilis str. 168	3.2e-05
BLAST match view associations BLAST with emb2726 emb2726 emb2726 AT4G29060	protein from Arabidopsis thaliana	3.4e-05
BLAST match view associations BLAST with zcchc17 zcchc17 zcchc17 zinc finger, CCHC domain containing 17	gene_product from Danio rerio	4.7e-05
BLAST match view associations BLAST with F1N7K4 F1N7K4 F1N7K4 Uncharacterized protein	protein from Bos taurus	6.2e-05
BLAST match view associations BLAST with ZCCHC17 ZCCHC17 ZCCHC17 PS1D	protein from Gallus gallus	6.4e-05
BLAST match view associations BLAST with SPO_0008 SPO_0008 SPO_0008 ribonuclease PH	protein from Ruegeria pomeroyi DSS-3	8.1e-05
BLAST match view associations BLAST with NSE_0408 NSE_0408 NSE_0408 ribosomal protein S1	protein from Neorickettsia sennetsu str. Miyayama	9.8e-05
BLAST match view associations BLAST with CHY_0314 CHY_0314 CHY_0314 ribonuclease PH	protein from Carboxydothermus hydrogenoformans Z-2901	0.00010
BLAST match view associations BLAST with PSPTO_0327 PSPTO_0327 PSPTO_0327 S1 RNA binding domain protein	protein from Pseudomonas syringae pv. tomato str. DC3000	0.00013
BLAST match view associations BLAST with Exosc5 Exosc5 Exosc5 exosome component 5	protein from Mus musculus	0.00013
BLAST match view associations BLAST with rph rph rph RNase PH monomer	protein from Escherichia coli K-12	0.00016
BLAST match view associations BLAST with tex tex tex S1 RNA-binding domain-containing transcriptional accessory protein	protein from Geobacter sulfurreducens PCA	0.00016
BLAST match view associations BLAST with GSU_0235 GSU_0235 GSU_0235 S1 RNA binding domain protein	protein from Geobacter sulfurreducens PCA	0.00016
BLAST match view associations BLAST with SPO_0802 SPO_0802 SPO_0802 ribosomal protein S1	protein from Ruegeria pomeroyi DSS-3	0.00017
BLAST match view associations BLAST with MGG_08807 MGG_08807 MGG_08807 Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22	protein from Magnaporthe oryzae 70-15	0.00017
BLAST match view associations BLAST with ECH_0402 ECH_0402 ECH_0402 putative ribosomal protein S1	protein from Ehrlichia chaffeensis str. Arkansas	0.00019
BLAST match view associations BLAST with CJE_0972 CJE_0972 CJE_0972 ribosomal protein S1	protein from Campylobacter jejuni RM1221	0.00019
BLAST match view associations BLAST with BA_0255 BA_0255 BA_0255 S1 RNA binding domain protein	protein from Bacillus anthracis	0.00019
BLAST match view associations BLAST with BA_0255 BA_0255 BA_0255 S1 RNA binding domain protein	protein from Bacillus anthracis str. Ames	0.00019
BLAST match view associations BLAST with E2R5A7 E2R5A7 E2R5A7 Uncharacterized protein	protein from Canis lupus familiaris	0.00031
BLAST match view associations BLAST with EXOSC5 EXOSC5 EXOSC5 Uncharacterized protein	protein from Bos taurus	0.00039
BLAST match view associations BLAST with CBU_0299 CBU_0299 CBU_0299 ribonuclease PH	protein from Coxiella burnetii RSA 493	0.00040
BLAST match view associations BLAST with AT3G46210 AT3G46210 AT3G46210	protein from Arabidopsis thaliana	0.00041
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  002054
        (974 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2222662 - symbol:AT5G14580 "AT5G14580" species...  3002  0.        2
UNIPROTKB|P50849 - symbol:pnp "Polyribonucleotide nucleot...  1333  8.2e-138  2
TIGR_CMR|CHY_1758 - symbol:CHY_1758 "polyribonucleotide n...  1338  1.2e-136  1
TIGR_CMR|GSU_1593 - symbol:GSU_1593 "polyribonucleotide n...  1316  4.0e-136  2
UNIPROTKB|Q0BWM9 - symbol:pnp "Polyribonucleotide nucleot...  1322  6.0e-135  1
UNIPROTKB|P05055 - symbol:pnp "polynucleotide phosphoryla...  1304  4.8e-133  1
TIGR_CMR|BA_3944 - symbol:BA_3944 "polyribonucleotide nuc...  1297  2.7e-132  1
TIGR_CMR|SO_1209 - symbol:SO_1209 "polyribonucleotide nuc...  1275  5.7e-130  1
UNIPROTKB|Q8TCS8 - symbol:PNPT1 "Polyribonucleotide nucle...  1262  1.4e-128  1
UNIPROTKB|Q5RCW2 - symbol:PNPT1 "Polyribonucleotide nucle...  1255  7.6e-128  1
UNIPROTKB|E1BIQ0 - symbol:PNPT1 "Uncharacterized protein"...  1251  2.0e-127  1
TIGR_CMR|CPS_2207 - symbol:CPS_2207 "polyribonucleotide n...  1250  2.6e-127  1
UNIPROTKB|G3V6G7 - symbol:Pnpt1 "Polyribonucleotide nucle...  1250  2.6e-127  1
UNIPROTKB|Q3IJ73 - symbol:pnp "Polyribonucleotide nucleot...  1246  6.8e-127  1
MGI|MGI:1918951 - symbol:Pnpt1 "polyribonucleotide nucleo...  1245  8.7e-127  1
TIGR_CMR|CBU_0852 - symbol:CBU_0852 "polyribonucleotide n...  1241  2.3e-126  1
TIGR_CMR|SPO_3389 - symbol:SPO_3389 "polyribonucleotide n...  1236  7.8e-126  1
TIGR_CMR|DET_0970 - symbol:DET_0970 "polyribonucleotide n...  1218  9.1e-126  2
UNIPROTKB|Q9KU76 - symbol:pnp "Polyribonucleotide nucleot...  1231  2.6e-125  1
TIGR_CMR|VC_0647 - symbol:VC_0647 "polyribonucleotide nuc...  1231  2.6e-125  1
UNIPROTKB|Q2GJV5 - symbol:pnp "Polyribonucleotide nucleot...  1195  1.7e-121  1
TIGR_CMR|APH_0767 - symbol:APH_0767 "polyribonucleotide n...  1195  1.7e-121  1
TIGR_CMR|ECH_0726 - symbol:ECH_0726 "polyribonucleotide n...  1181  5.2e-120  1
FB|FBgn0039846 - symbol:CG11337 species:7227 "Drosophila ...  1161  6.9e-118  1
UNIPROTKB|F1NU18 - symbol:PNPT1 "Uncharacterized protein"...  1158  1.4e-117  1
UNIPROTKB|E2QWK2 - symbol:PNPT1 "Uncharacterized protein"...  1123  7.3e-114  1
TAIR|locus:2079429 - symbol:RIF10 "AT3G03710" species:370...   771  1.2e-108  2
UNIPROTKB|O33325 - symbol:pnp "Polyribonucleotide nucleot...   804  1.0e-107  2
TIGR_CMR|CJE_1390 - symbol:CJE_1390 "polyribonucleotide n...   657  1.3e-99   3
TIGR_CMR|NSE_0057 - symbol:NSE_0057 "polyribonucleotide n...   977  2.2e-98   1
WB|WBGene00015266 - symbol:BE0003N10.1 species:6239 "Caen...   976  2.8e-98   1
UNIPROTKB|H7BZ02 - symbol:PNPT1 "Polyribonucleotide nucle...   955  4.7e-96   1
RGD|1307987 - symbol:Pnpt1 "polyribonucleotide nucleotidy...   821  7.4e-82   1
UNIPROTKB|I3LEL9 - symbol:LOC100737729 "Uncharacterized p...   365  1.9e-32   1
UNIPROTKB|H7BXF6 - symbol:PNPT1 "Polyribonucleotide nucle...   298  3.0e-25   1
UNIPROTKB|F1SQL0 - symbol:PNPT1 "Uncharacterized protein"...   298  3.0e-25   1
CGD|CAL0002905 - symbol:orf19.4582 species:5476 "Candida ...   187  2.2e-13   1
UNIPROTKB|H7C3C5 - symbol:PNPT1 "Polyribonucleotide nucle...   160  1.7e-10   1
UNIPROTKB|Q724J5 - symbol:LMOf2365_0229 "RNA-binding prot...   158  2.8e-10   1
TAIR|locus:2076710 - symbol:RRP41 "AT3G61620" species:370...   162  2.2e-09   1
UNIPROTKB|Q71X59 - symbol:LMOf2365_2340 "S1 RNA binding d...   143  1.1e-08   1
UNIPROTKB|Q81VX9 - symbol:BAS0060 "S1 RNA binding domain ...   143  1.1e-08   1
TIGR_CMR|BA_0060 - symbol:BA_0060 "S1 RNA binding domain ...   143  1.1e-08   1
MGI|MGI:1923576 - symbol:Exosc4 "exosome component 4" spe...   157  1.1e-08   1
RGD|1310986 - symbol:Exosc4 "exosome component 4" species...   155  2.0e-08   1
TAIR|locus:2145860 - symbol:RPS1 "ribosomal protein S1" s...   162  2.0e-08   1
UNIPROTKB|O06147 - symbol:rpsA "30S ribosomal protein S1"...   163  2.1e-08   1
UNIPROTKB|E2RIM3 - symbol:EXOSC4 "Uncharacterized protein...   154  2.7e-08   1
TIGR_CMR|BA_1519 - symbol:BA_1519 "ribosomal protein S1" ...   158  4.7e-08   1
UNIPROTKB|Q7YRA3 - symbol:EXOSC4 "Exosome complex compone...   151  6.2e-08   1
UNIPROTKB|Q9NPD3 - symbol:EXOSC4 "Exosome complex compone...   150  8.2e-08   1
TIGR_CMR|GSU_2603 - symbol:GSU_2603 "ribosomal protein S1...   141  1.1e-07   3
ZFIN|ZDB-GENE-050522-362 - symbol:exosc6 "exosome compone...   150  1.3e-07   1
POMBASE|SPAC3G9.10c - symbol:rrp41 "exosomal 3'-to-5' pho...   147  1.8e-07   1
UNIPROTKB|Q9KVD6 - symbol:rph "Ribonuclease PH" species:2...   146  2.1e-07   1
TIGR_CMR|VC_0210 - symbol:VC_0210 "ribonuclease PH" speci...   146  2.1e-07   1
TAIR|locus:2124024 - symbol:RRP41L "AT4G27490" species:37...   146  3.1e-07   1
UNIPROTKB|F1RSL0 - symbol:EXOSC4 "Uncharacterized protein...   144  4.3e-07   1
TIGR_CMR|BA_4715 - symbol:BA_4715 "ribonuclease PH" speci...   143  5.7e-07   1
ASPGD|ASPL0000013004 - symbol:AN3812 species:162425 "Emer...   146  7.5e-07   2
WB|WBGene00007201 - symbol:exos-4.1 species:6239 "Caenorh...   140  1.2e-06   1
UNIPROTKB|Q17533 - symbol:exos-4.1 "Putative exosome comp...   140  1.2e-06   1
FB|FBgn0032487 - symbol:Ski6 "Ski6" species:7227 "Drosoph...   140  1.3e-06   1
TIGR_CMR|GSU_1200 - symbol:GSU_1200 "ribosomal protein S1...   145  1.4e-06   1
TIGR_CMR|CPS_2335 - symbol:CPS_2335 "ribosomal protein S1...   127  1.7e-06   2
TIGR_CMR|SO_2402 - symbol:SO_2402 "ribosomal protein S1" ...   142  2.4e-06   2
SGD|S000003427 - symbol:SKI6 "Exosome non-catalytic core ...   137  2.9e-06   1
UNIPROTKB|P0AG67 - symbol:rpsA "30S ribosomal subunit pro...   135  3.3e-06   2
ZFIN|ZDB-GENE-040426-1702 - symbol:exosc4 "exosome compon...   136  3.7e-06   1
TIGR_CMR|CBU_0528 - symbol:CBU_0528 "ribosomal protein S1...   138  3.9e-06   2
TIGR_CMR|BA_5132 - symbol:BA_5132 "general stress protein...   119  4.1e-06   1
TIGR_CMR|APH_0273 - symbol:APH_0273 "ribosomal protein S1...   143  1.1e-05   3
UNIPROTKB|Q0BZL2 - symbol:HNE_2386 "S1 RNA binding domain...   127  2.2e-05   3
UNIPROTKB|Q9KQT3 - symbol:VC_1915 "30S ribosomal protein ...   133  2.8e-05   2
TIGR_CMR|VC_1915 - symbol:VC_1915 "ribosomal protein S1" ...   133  2.8e-05   2
WB|WBGene00003393 - symbol:mog-5 species:6239 "Caenorhabd...   139  3.0e-05   1
UNIPROTKB|Q09530 - symbol:mog-5 "Probable pre-mRNA-splici...   139  3.0e-05   1
UNIPROTKB|P28619 - symbol:rph "Ribonuclease PH" species:2...   128  3.2e-05   1
TAIR|locus:2119946 - symbol:emb2726 "embryo defective 272...   136  3.4e-05   2
ZFIN|ZDB-GENE-040325-2 - symbol:zcchc17 "zinc finger, CCH...   126  4.7e-05   1
UNIPROTKB|F1N7K4 - symbol:F1N7K4 "Uncharacterized protein...   125  6.2e-05   1
UNIPROTKB|Q6R2T1 - symbol:ZCCHC17 "Uncharacterized protei...   125  6.4e-05   1
TIGR_CMR|SPO_0008 - symbol:SPO_0008 "ribonuclease PH" spe...   124  8.1e-05   1
TIGR_CMR|NSE_0408 - symbol:NSE_0408 "ribosomal protein S1...   123  9.8e-05   2
TIGR_CMR|CHY_0314 - symbol:CHY_0314 "ribonuclease PH" spe...   124  0.00010   1
UNIPROTKB|Q88AQ9 - symbol:PSPTO_0327 "S1 RNA binding doma...   142  0.00013   2
MGI|MGI:107889 - symbol:Exosc5 "exosome component 5" spec...   122  0.00013   1
UNIPROTKB|P0CG19 - symbol:rph "RNase PH monomer" species:...   121  0.00016   1
UNIPROTKB|Q74GL1 - symbol:tex "S1 RNA-binding domain-cont...   134  0.00016   2
TIGR_CMR|GSU_0235 - symbol:GSU_0235 "S1 RNA binding domai...   134  0.00016   2
TIGR_CMR|SPO_0802 - symbol:SPO_0802 "ribosomal protein S1...   128  0.00017   1
UNIPROTKB|G4NFJ0 - symbol:MGG_08807 "Pre-mRNA-splicing fa...   132  0.00017   1
TIGR_CMR|ECH_0402 - symbol:ECH_0402 "putative ribosomal p...   136  0.00019   2
TIGR_CMR|CJE_0972 - symbol:CJE_0972 "ribosomal protein S1...   122  0.00019   3
UNIPROTKB|Q81VF3 - symbol:BA_0255 "S1 RNA binding domain ...   128  0.00019   2
TIGR_CMR|BA_0255 - symbol:BA_0255 "S1 RNA binding domain ...   128  0.00019   2
UNIPROTKB|E2R5A7 - symbol:E2R5A7 "Uncharacterized protein...   119  0.00031   1
UNIPROTKB|E1BAG2 - symbol:EXOSC5 "Uncharacterized protein...   118  0.00039   1
TIGR_CMR|CBU_0299 - symbol:CBU_0299 "ribonuclease PH" spe...   118  0.00040   1
TAIR|locus:2075351 - symbol:AT3G46210 "AT3G46210" species...   118  0.00041   1

WARNING:  Descriptions of 21 database sequences were not reported due to the
          limiting value of parameter V = 100.


>TAIR|locus:2222662 [details] [associations]
            symbol:AT5G14580 "AT5G14580" species:3702 "Arabidopsis
            thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
            evidence=IGI;ISS] [GO:0003676 "nucleic acid binding" evidence=ISS]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739 "mitochondrion"
            evidence=ISM] [GO:0000957 "mitochondrial RNA catabolic process"
            evidence=IGI] [GO:0000963 "mitochondrial RNA processing"
            evidence=IGI] [GO:0004654 "polyribonucleotide
            nucleotidyltransferase activity" evidence=IGI] [GO:0042991
            "transcription factor import into nucleus" evidence=RCA]
            HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
            InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00575 Pfam:PF03726
            PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
            InterPro:IPR015847 Pfam:PF01138 GO:GO:0005739 EMBL:CP002688
            GO:GO:0006397 GO:GO:0003723 GO:GO:0008033 GO:GO:0006402
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 GO:GO:0000963
            GO:GO:0000175 InterPro:IPR022967 SMART:SM00316 EMBL:AL163792
            HSSP:P05055 GO:GO:0000957 Pfam:PF03725 SUPFAM:SSF55666
            HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
            PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 EMBL:Y14685
            EMBL:Y14686 IPI:IPI00534639 PIR:T48631 RefSeq:NP_196962.1
            UniGene:At.427 ProteinModelPortal:Q9S7G6 SMR:Q9S7G6 STRING:Q9S7G6
            PRIDE:Q9S7G6 EnsemblPlants:AT5G14580.1 GeneID:831309
            KEGG:ath:AT5G14580 GeneFarm:4118 TAIR:At5g14580 InParanoid:Q9S7G6
            OMA:RDKTLMI PhylomeDB:Q9S7G6 ProtClustDB:CLSN2687232
            Genevestigator:Q9S7G6 Uniprot:Q9S7G6
        Length = 991

 Score = 3002 (1061.8 bits), Expect = 0., Sum P(2) = 0.
 Identities = 597/832 (71%), Positives = 685/832 (82%)

Query:     1 MSSLATKTHPLLNNLPPFLTWRALGFRTICSGRLGFXXXXXXXXXXXXXXXGTKVLETFK 60
             MSS+  +      +LP FL WRALGFRTICSGRLGF               GTK+LE+FK
Sbjct:     1 MSSIVNRASSA--SLPNFLAWRALGFRTICSGRLGFAPSVPDSPVSA----GTKILESFK 54

Query:    61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQ 120
             EEFE+GSR+++ ETGKIARFANG+VVLGMDETKVLSTVT +K DS RDFLPLTVDYQEKQ
Sbjct:    55 EEFEVGSRVVSFETGKIARFANGSVVLGMDETKVLSTVTCAKTDSPRDFLPLTVDYQEKQ 114

Query:   121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
             +AQG+IPNTYMRREGAPKERELL GR+IDRPIRPLFP GFYHEVQ+MASVLSSDGKQDPD
Sbjct:   115 YAQGLIPNTYMRREGAPKERELLCGRLIDRPIRPLFPTGFYHEVQIMASVLSSDGKQDPD 174

Query:   181 IMAANATSAALMLSDXXXXXXXXXXXXXXXXXQFIVNPTMDELSLSDLNLVYACTREKTL 240
             I+AANA+SAALMLSD                 QF+VNPTMDELS SDLNL+YACTR+KT+
Sbjct:   175 ILAANASSAALMLSDVPWGGPIGVIRIGRICGQFVVNPTMDELSSSDLNLIYACTRDKTM 234

Query:   241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
             MIDVQ+REISEKDL A LRLAHPEAVKYL+PQIRLAEKAGKQKKEYKLSM+S++TLEKV+
Sbjct:   235 MIDVQSREISEKDLAAALRLAHPEAVKYLDPQIRLAEKAGKQKKEYKLSMLSDKTLEKVA 294

Query:   301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTXXXXXX 360
             +LA   IE+VFTDPSY KFERGEALD IG+DV+K  EEE D+ESL +LPKAVDT      
Sbjct:   295 DLAATRIESVFTDPSYGKFERGEALDNIGKDVRKVFEEEGDQESLSILPKAVDTVRKKVV 354

Query:   361 XXXXXAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
                  ++G RVDGR +DEVRPIYCES  LP LHGS+LFSRGDTQVLCTVTLGAPAEAQ L
Sbjct:   355 RSRMISDGFRVDGRHVDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGAPAEAQSL 414

Query:   421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
             +SLVGPP KRFMLHYSFPP+C NEVGKR GLNRREVGHGTLAEKALLAVLPPE  FPYT+
Sbjct:   415 DSLVGPPKKRFMLHYSFPPYCTNEVGKRGGLNRREVGHGTLAEKALLAVLPPEEAFPYTI 474

Query:   481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
             R+NSEVM+SDGSTSMA+VCGGSMALMDAGIPL+ HVAGVSVGL+++VDPS+GEIKDYRI+
Sbjct:   475 RINSEVMSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVGLITDVDPSSGEIKDYRIV 534

Query:   541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
             TDILGLEDHLGDMDFKIAGTR GVTAIQLDIKPAGIPLDI+CE LE+A + RLQILDHME
Sbjct:   535 TDILGLEDHLGDMDFKIAGTRDGVTAIQLDIKPAGIPLDIVCESLENAREARLQILDHME 594

Query:   601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSDGTLTVVA 660
             R I++PR QD   SPRLATLKY ND+LR LIGP+G LKRKIE ETG R+S+ +GTLT+VA
Sbjct:   595 RNINSPRGQDGAYSPRLATLKYSNDSLRTLIGPMGVLKRKIEVETGARLSIDNGTLTIVA 654

Query:   661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
             KN+ VMEK  E+VDFIIGRE+ VGG+YKG V+S+KEYGAFVEF GGQQGLLH+SELSHEP
Sbjct:   655 KNQDVMEKAQEQVDFIIGRELVVGGVYKGTVSSIKEYGAFVEFPGGQQGLLHMSELSHEP 714

Query:   721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVPVNKQATDVW 780
             VS+VSDV+ +GQ ++  CI  DVRGNIKLS KA+ P+P+        G  PV K+++ V+
Sbjct:   715 VSKVSDVLDIGQCITTMCIETDVRGNIKLSRKALLPKPKRKPASDA-GKDPVMKESSTVY 773

Query:   781 ---ASVGDVSNGQNPELPMRKNETPGVNSSTSSTPAVLIRSAAECDEEEKAS 829
                +SVG++     P +      TP +  S  S PAV+IR+A EC+E EK+S
Sbjct:   774 IENSSVGEIVASM-PSIV-----TP-LQKSRLSVPAVVIRTAVECNEAEKSS 818

 Score = 207 (77.9 bits), Expect = 0., Sum P(2) = 0.
 Identities = 55/121 (45%), Positives = 72/121 (59%)

Query:   853 KFTSQSDFFSSTNIQKSTSFSQREREELAECLFGTEDGDEDNKGTRVEAIVSAKNLKLGT 912
             K  S S   +ST      SFS+ ++  + E L        +NK     A VS + LK+GT
Sbjct:   876 KLKSVSPKNNST-ASNLVSFSKAKKSTMKENL-------SENKAEE-SASVSTRKLKIGT 926

Query:   913 KVAAKVYQVRARGLVLDLGGGIRGMYRFENNEKKDFVVGDELLVKCSSFTGKGIPVVSLV 972
             ++ A V  VRA GLVLDLGG IRGMY F+ ++ K F  GD L VKC+SF  KG+PV++LV
Sbjct:   927 EMTATVDHVRALGLVLDLGGEIRGMYIFQGDKDK-FKKGDTLRVKCTSFNTKGVPVMALV 985

Query:   973 D 973
             D
Sbjct:   986 D 986


>UNIPROTKB|P50849 [details] [associations]
            symbol:pnp "Polyribonucleotide nucleotidyltransferase"
            species:224308 "Bacillus subtilis subsp. subtilis str. 168"
            [GO:0005515 "protein binding" evidence=IPI] HAMAP:MF_01595
            InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
            InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
            Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
            SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
            GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 EMBL:AL009126
            GenomeReviews:AL009126_GR GO:GO:0006402 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
            SUPFAM:SSF54211 GO:GO:0000175 GO:GO:0030420 InterPro:IPR022967
            SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
            GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
            ProtClustDB:PRK11824 EMBL:U29668 EMBL:Z80835 PIR:S70691
            RefSeq:NP_389551.1 ProteinModelPortal:P50849 SMR:P50849
            IntAct:P50849 EnsemblBacteria:EBBACT00000003076 GeneID:939646
            KEGG:bsu:BSU16690 PATRIC:18975145 GenoList:BSU16690
            BioCyc:BSUB:BSU16690-MONOMER Uniprot:P50849
        Length = 705

 Score = 1333 (474.3 bits), Expect = 8.2e-138, Sum P(2) = 8.2e-138
 Identities = 291/700 (41%), Positives = 430/700 (61%)

Query:    60 KEEFEI--GSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQ 117
             K  F I    R +T+ETG++A+ ANGAV++   +T VLST T+SK     DF PLTV+Y+
Sbjct:     5 KHVFTIDWAGRTLTVETGQLAKQANGAVMIRYGDTAVLSTATASKEPKPLDFFPLTVNYE 64

Query:   118 EKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQ 177
             E+ +A G IP  +++REG P E+ +L  R+IDRPIRPLF  GF +EVQV++ V+S D   
Sbjct:    65 ERLYAVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNC 124

Query:   178 DPDIMAANATSAALMLSDXXXXXXXXXXXXXXXXXQFIVNPTMDELSLSDLNLVYACTRE 237
               ++ A   +S AL +SD                 QFI+NPT+D+L  SD+NLV A T++
Sbjct:   125 SSEMAAMFGSSLALSVSDIPFEGPIAGVTVGRIDDQFIINPTVDQLEKSDINLVVAGTKD 184

Query:   238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE 297
                M++  A E+ E+ +   +   H E  + +  Q  +    GK+K E KL  I E+  E
Sbjct:   185 AINMVEAGADEVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKSEIKLFEIDEELNE 244

Query:   298 KVSNLAEAHI-EAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTX 355
             KV  LAE  + +A+     + K  R +A++++   V    E EE DE++++ + + +   
Sbjct:   245 KVKALAEEDLLKAIQV---HEKHAREDAINEVKNAVVAKFEDEEHDEDTIKQVKQILSKL 301

Query:   356 XXXXXXXXXXAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
                        E VR DGR +D++RP+  E G LP  HGS LF+RG TQ L   TLGA  
Sbjct:   302 VKNEVRRLITEEKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALG 361

Query:   416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
             + Q L+ L    +KRFM HY+FP F + E G   G  RRE+GHG L E+AL  V+P E D
Sbjct:   362 DVQILDGLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKD 421

Query:   476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
             FPYTVR+ SEV+ S+GSTS A++C  ++A+MDAG+P++  VAG+++GLV      +GE  
Sbjct:   422 FPYTVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVK-----SGE-- 474

Query:   536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
              Y +LTDI G+ED LGDMDFK+AGT  GVTA+Q+DIK  G+  +I+ E L+ A KGR++I
Sbjct:   475 HYTVLTDIQGMEDALGDMDFKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEI 534

Query:   596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DG 654
             L+ M   +S  R +  R +P++ T+  + D +R +IGP G    KI EETG +I +  DG
Sbjct:   535 LNSMLATLSESRKELSRYAPKILTMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDG 594

Query:   655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
             T+ + + + S  +K  + ++ ++ RE+EVG +Y G V  ++++GAFVE   G+ GL+H+S
Sbjct:   595 TIFISSTDESGNQKAKKIIEDLV-REVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHIS 653

Query:   715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
             EL+ E V +V DVV +G ++ ++    D +G + LS KAV
Sbjct:   654 ELALERVGKVEDVVKIGDEILVKVTEIDKQGRVNLSRKAV 693

 Score = 37 (18.1 bits), Expect = 8.2e-138, Sum P(2) = 8.2e-138
 Identities = 10/45 (22%), Positives = 23/45 (51%)

Query:   884 LFGTEDGDEDNKGTRVEAIVSAKNL-KLGTKVAAKVYQVRARGLV 927
             +F  +DG        +E +   +++ K+G ++  KV ++  +G V
Sbjct:   642 IFSGKDGLVHISELALERVGKVEDVVKIGDEILVKVTEIDKQGRV 686


>TIGR_CMR|CHY_1758 [details] [associations]
            symbol:CHY_1758 "polyribonucleotide
            nucleotidyltransferase" species:246194 "Carboxydothermus
            hydrogenoformans Z-2901" [GO:0004654 "polyribonucleotide
            nucleotidyltransferase activity" evidence=ISS] [GO:0006401 "RNA
            catabolic process" evidence=ISS] [GO:0006402 "mRNA catabolic
            process" evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
            InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
            PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
            InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
            EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723 GO:GO:0006396
            GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
            SMART:SM00316 HSSP:Q9UXC2 Pfam:PF03725 SUPFAM:SSF55666
            eggNOG:COG1185 HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654
            Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824
            RefSeq:YP_360578.1 ProteinModelPortal:Q3ABA6 STRING:Q3ABA6
            GeneID:3727728 KEGG:chy:CHY_1758 PATRIC:21276631
            BioCyc:CHYD246194:GJCN-1757-MONOMER Uniprot:Q3ABA6
        Length = 731

 Score = 1338 (476.1 bits), Expect = 1.2e-136, P = 1.2e-136
 Identities = 305/731 (41%), Positives = 441/731 (60%)

Query:    52 GTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFL 110
             G ++LE   +E  I  R + L  GK+A  A+G+V++   +T VL T T SK      DF 
Sbjct:     4 GRQILE---KEIMIAGRPLKLTAGKVATQASGSVLVSYGDTVVLVTATGSKEPREGIDFF 60

Query:   111 PLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASV 170
             PLTVDY+E+ +A G IP  +++REG P E+ +L  R+IDRPIRPLFP GF ++V ++A+V
Sbjct:    61 PLTVDYEERFYAVGKIPGGFIKREGRPSEKAILSARLIDRPIRPLFPKGFKNDVHIVATV 120

Query:   171 LSSDGKQDPDIMAANATSAALMLSDXXXXXXXXXXXXXXXXXQFIVNPTMDELSLSDLNL 230
             LS +    P+I A N  SAAL LS                  + ++NPT+++   S L+L
Sbjct:   121 LSVNQDNPPEIAAMNGASAALTLSHLPFLGPIGAVVVGLVEDELVINPTIEQAEKSRLHL 180

Query:   231 VYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVK---YLEPQIRLAEKAGKQKKEYK 287
             V A TR+  +M++  A+E+ E+ +   +   H E  K   ++E     A K G  K+  K
Sbjct:   181 VVAGTRDAVMMVEAGAQEVPEEIMIEAITRGHEEVKKIVAFIEEFREEALKLGLAKE--K 238

Query:   288 LSMISEQTLE-KVSNLAEAH------IEAVFTDPSYSKFERGEALDKIGQDVKKALEEEC 340
             + ++ E+  E K +  AEA+      IE +  +  ++K ER E L+ + +++     E  
Sbjct:   239 MEVVVEEKAELKEAVTAEAYPLLKEAIEKIIAE-KFNKQERDEYLENLKKELTTKFLETY 297

Query:   341 DEESLQVLPKAV-DTXXXXXXXXXXXAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFS 399
              EE L +  K + D+            EG+R+DGR+ DEVRPI+CE G LP  HGS LF+
Sbjct:   298 PEEELTI--KGILDSIQKEIVRQKILKEGIRIDGRKTDEVRPIWCEVGLLPRTHGSGLFT 355

Query:   400 RGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHG 459
             RG TQVL  VTLGA  + Q L+ L    +KRFM HY+FPP+ + EV    G  RRE+GHG
Sbjct:   356 RGQTQVLSIVTLGAVGDVQILDDLGIEESKRFMHHYNFPPYSVGEVRPMRGPGRREIGHG 415

Query:   460 TLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGV 519
              LAE+AL  V+PPE  FPYT+R+ SEV+ S+GSTSM +VCG ++ALMDAG+P++  VAGV
Sbjct:   416 ALAERALEPVIPPEEVFPYTIRIVSEVLESNGSTSMGSVCGSTLALMDAGVPIKAPVAGV 475

Query:   520 SVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLD 579
             ++GL+ E D       +  ILTDI G+ED LGDMDFK+AGT+ G+TA+Q+DIK AG+  D
Sbjct:   476 AMGLIKEGD-------EVAILTDIQGIEDALGDMDFKVAGTKDGITALQMDIKIAGVTRD 528

Query:   580 IICECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKR 639
             I+ + L  A +GR+ IL  M   IS PR +    +PR+     D + +R +IGP G + +
Sbjct:   529 ILTKALAQAREGRMHILGKMLEVISEPRKELSPYAPRIIFTTVDPEKIRDIIGPGGKIIK 588

Query:   640 KIEEETGGRISVSD-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYG 698
             KI +ETG +I + D G + + A ++   EK L  ++ +  +EIEVG +Y G VT + ++G
Sbjct:   589 KIIDETGVKIDIEDDGRIFIAAVDKEAGEKALNIIENLT-KEIEVGKVYLGKVTRIADFG 647

Query:   699 AFVEF-NG-----GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
             AFVE   G     G++GL+H+S+L+H  V RV DVV  G Q+ ++ IG D +G +KLS K
Sbjct:   648 AFVEVVPGVLGLPGKEGLVHISQLAHSRVKRVEDVVKEGDQILVKAIGYDNQGRLKLSRK 707

Query:   753 AVSPRPEADVK 763
                P  E   K
Sbjct:   708 DAIPAEEVREK 718


>TIGR_CMR|GSU_1593 [details] [associations]
            symbol:GSU_1593 "polyribonucleotide
            nucleotidyltransferase" species:243231 "Geobacter sulfurreducens
            PCA" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
            "polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
            [GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
            InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
            InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
            Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
            SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
            GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 EMBL:AE017180
            GenomeReviews:AE017180_GR GO:GO:0006402 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
            SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
            HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185
            HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
            PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
            ProtClustDB:PRK11824 RefSeq:NP_952644.4 ProteinModelPortal:Q74CS9
            GeneID:2687125 KEGG:gsu:GSU1593 PATRIC:22026031
            BioCyc:GSUL243231:GH27-1537-MONOMER Uniprot:Q74CS9
        Length = 697

 Score = 1316 (468.3 bits), Expect = 4.0e-136, Sum P(2) = 4.0e-136
 Identities = 292/696 (41%), Positives = 410/696 (58%)

Query:    60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQE 118
             K   E G R IT+ TGK A+ A+GAVV+   +T VL T  ++K     +DF PLTV+YQE
Sbjct:     5 KVNVEFGGRTITIATGKWAKQASGAVVVSCGDTVVLVTAVATKSAREGQDFFPLTVNYQE 64

Query:   119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
             K +A G IP  + +REG P + E L  R IDRPIRPLFP  F ++ Q+MA+V+S+D   D
Sbjct:    65 KAYAGGKIPGGFFKREGRPSDNETLTSRFIDRPIRPLFPESFLNDTQIMATVVSADQDND 124

Query:   179 PDIMAANATSAALMLSDXXXXXXXXXXXXXXXXXQFIVNPTMDELSLSDLNLVYACTREK 238
             P I+A    SAAL +SD                 QF+ NPT+++L  SDL +V A +R+ 
Sbjct:   125 PGILAMIGASAALEVSDIPFLGPIAGVKVGRVDGQFVCNPTVEQLEKSDLEIVVAASRDA 184

Query:   239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
              +M++  A E SEKD+   +   H      +E Q  L + AG  K+E   + + E    +
Sbjct:   185 VIMVEGGAAEASEKDVLEAIFFGHAAVQPIIEAQTDLRKLAGVPKREVAATSVDEALKTR 244

Query:   299 VSNLAEAHI-EAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTXXX 357
             V +LA A I EAV      +K ER   + +I     + L  E +    ++     D    
Sbjct:   245 VKDLAYAGIKEAVRI---VAKQERHNRIGEITAQTLETLLPEYEGRESEIKGFLGD-FEY 300

Query:   358 XXXXXXXXAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
                      +G R+DGR    +RPI  E   LP  HGS+LF+RG+TQ L   TLG   + 
Sbjct:   301 ELVREHIIKDGYRIDGRDTTTIRPISIEVSMLPRAHGSALFTRGETQALVASTLGTSIDE 360

Query:   418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
             QR++SL G   KRF+LHY+FPPF + E   R+   RRE+GHG LAE+AL  V+P   DFP
Sbjct:   361 QRIDSLYGETRKRFLLHYNFPPFSVGETSFRLAPGRREIGHGMLAERALERVVPKHEDFP 420

Query:   478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
             YT+R+ S+++ S+GS+SMATVCGG++A+MDAG+P++  VAG+++GL+ E     GE    
Sbjct:   421 YTIRIVSDILESNGSSSMATVCGGALAMMDAGVPIKAPVAGIAMGLIKE-----GE--GI 473

Query:   538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
              IL+DILG EDHLGDMDFK+AGT  GVTAIQ+DIK  G+  +I+ + L  A  GRL IL 
Sbjct:   474 AILSDILGDEDHLGDMDFKVAGTEAGVTAIQMDIKITGVTREIMEKALLQARDGRLHILG 533

Query:   598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTL 656
              M + I+APRT     +PR+ T+    D +R +IG  G   R I E TG  I + D G +
Sbjct:   534 KMNQAIAAPRTDLSPYAPRITTIWVKTDKIRDVIGSGGKNIRGITEATGVSIDIEDSGRI 593

Query:   657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
              + + ++   +K ++ +  +   E E G +Y G V  V ++GAFVE   G  GL+H+SEL
Sbjct:   594 NIASTSKEACDKAIKMIRDLTA-EAEEGKLYMGTVKKVMDFGAFVEIFPGTDGLVHISEL 652

Query:   717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
               E V  V+DV++ G ++ ++CIG D +G IKLS K
Sbjct:   653 DTERVKNVTDVLNEGDKVLVKCIGIDKQGKIKLSRK 688

 Score = 38 (18.4 bits), Expect = 4.0e-136, Sum P(2) = 4.0e-136
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query:   951 GDELLVKCSSFTGKG 965
             GD++LVKC     +G
Sbjct:   667 GDKVLVKCIGIDKQG 681


>UNIPROTKB|Q0BWM9 [details] [associations]
            symbol:pnp "Polyribonucleotide nucleotidyltransferase"
            species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0004654
            "polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
            [GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
            InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
            InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
            Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
            SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
            GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 GO:GO:0006402
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR020568 SUPFAM:SSF54211 EMBL:CP000158
            GenomeReviews:CP000158_GR GO:GO:0000175 InterPro:IPR022967
            SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
            GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
            ProtClustDB:PRK11824 RefSeq:YP_762114.1 ProteinModelPortal:Q0BWM9
            STRING:Q0BWM9 GeneID:4288000 KEGG:hne:HNE_3441 PATRIC:32219759
            BioCyc:HNEP228405:GI69-3443-MONOMER Uniprot:Q0BWM9
        Length = 713

 Score = 1322 (470.4 bits), Expect = 6.0e-135, P = 6.0e-135
 Identities = 294/700 (42%), Positives = 431/700 (61%)

Query:    64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQFA 122
             E   R +T+ETG++AR A+GAV++   +T VL+T   +K     +DF PLTV+YQEK FA
Sbjct:    10 EWAGRTLTIETGQVARQADGAVMVQYGDTIVLATAVFAKEAKPGQDFFPLTVNYQEKYFA 69

Query:   123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
              G IP  + +REG P E+E L  R+IDRPIRPLF  GF HEVQV+ + LS D + D DI+
Sbjct:    70 SGRIPGGFFKREGRPTEKETLTSRLIDRPIRPLFVDGFKHEVQVVVTTLSYDLENDADII 129

Query:   183 AANATSAALMLSDXXXXXXXXXXXXXXXXXQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
             A    SAAL+LS                  Q+I+NPT+ EL  S+L+LV A T +  +M+
Sbjct:   130 ALVGASAALVLSGAPFMGPIGAARVGYKDGQYIINPTIAELEESELDLVVAGTTDAVMMV 189

Query:   243 DVQAREISEKDLEAGLRLAHPEAVK-YLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
             + QA E+SE D+  G  +A  +A++  ++  I LAEKA K+   Y+    S   L+ V +
Sbjct:   190 ESQAAELSE-DVMLGAVVAGHDAMQPVIDAIIALAEKAAKEPFAYEPPDHSA-ALKSVID 247

Query:   302 LAEAHIEAVFTDPSYSKFERGEALDKIG--QDVKKALEEECDEESLQVLPKAVDTXXXXX 359
                A +       +Y    +GE    IG  +D  KA     DE    + P+   T     
Sbjct:   248 TVGADLSK-----AYKITAKGERYAAIGAAKDKAKAALLGTDEAPGVMTPEVFKTVFKEA 302

Query:   360 XXXXXXAE----GVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
                    +    G R+DGR+LD++RPI  E+G LP  HGSSLF+RG+TQ +C  TLG   
Sbjct:   303 EASVVRGDILKTGQRIDGRKLDQIRPIVAEAGFLPRTHGSSLFTRGETQAICVATLGTSD 362

Query:   416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
             + Q ++ L G   ++FMLHY+FPP+ + E G+  G  RRE+GHG LA +AL AVLP   D
Sbjct:   363 DEQYIDGLDGTKKEKFMLHYNFPPYSVGETGRMGGAGRREIGHGKLAWRALKAVLPKHED 422

Query:   476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
             FPYT+R+ SE+  S+GS+SMATVCG S+A+MDAG+PL   V+G+++GL+ E     G   
Sbjct:   423 FPYTIRMVSEITESNGSSSMATVCGCSLAMMDAGVPLTRPVSGIAMGLILE-----GS-- 475

Query:   536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
             ++ +L+DILG EDHLGDMDFK+AGT  GVT++Q+DIK AGI  DI+ + LE A  GR+ I
Sbjct:   476 EFAVLSDILGDEDHLGDMDFKVAGTENGVTSLQMDIKVAGITKDIMGKALEQAKGGRMHI 535

Query:   596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-G 654
             L  M + ++A R Q   N+P++  +K   D +R +IG  G + R I +ETG ++++ D G
Sbjct:   536 LGEMGKALTASRGQLSENAPQMEIIKVPTDKIRDVIGSGGKVIRGIVDETGAKVNIDDDG 595

Query:   655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
             T+ + A +R  ++  ++ +  I   E EVG IY+G V S+K++G FV F G + GL+HVS
Sbjct:   596 TVQISAMDRKSIDAAIKMIKGITA-EAEVGEIYEGKVVSMKDFGIFVNFFGPKDGLVHVS 654

Query:   715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
             +++++ +    ++V  G ++ ++ +G D RG ++LS+K V
Sbjct:   655 QMANKRIGHPKEMVKEGDKVWVKLMGFDERGKVRLSMKVV 694


>UNIPROTKB|P05055 [details] [associations]
            symbol:pnp "polynucleotide phosphorylase monomer"
            species:83333 "Escherichia coli K-12" [GO:0006402 "mRNA catabolic
            process" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0035438 "cyclic-di-GMP binding" evidence=IDA] [GO:0042802
            "identical protein binding" evidence=IPI] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0016020 "membrane" evidence=IDA]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0006950 "response to
            stress" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA;IDA]
            [GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
            evidence=IEA;IDA] HAMAP:MF_01595 InterPro:IPR003029
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR009019
            InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
            Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
            SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
            GO:GO:0005829 GO:GO:0006950 GO:GO:0016020 EMBL:U00096 EMBL:AP009048
            GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:U18997
            GO:GO:0003723 GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
            SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
            SUPFAM:SSF54814 Pfam:PF03725 SUPFAM:SSF55666 EMBL:J02638
            eggNOG:COG1185 HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654
            Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 OMA:YTMRVVS BRENDA:2.7.7.8 ProtClustDB:PRK11824
            EMBL:X00761 EMBL:M14425 PIR:H65106 RefSeq:NP_417633.4
            RefSeq:YP_491351.1 PDB:1SRO PDB:3CDI PDB:3CDJ PDB:3H1C PDBsum:1SRO
            PDBsum:3CDI PDBsum:3CDJ PDBsum:3H1C ProteinModelPortal:P05055
            SMR:P05055 DIP:DIP-10522N IntAct:P05055 MINT:MINT-244786
            PhosSite:P0810422 SWISS-2DPAGE:P05055 PaxDb:P05055 PRIDE:P05055
            EnsemblBacteria:EBESCT00000001884 EnsemblBacteria:EBESCT00000002008
            EnsemblBacteria:EBESCT00000002009 EnsemblBacteria:EBESCT00000002010
            EnsemblBacteria:EBESCT00000015515 GeneID:12933437 GeneID:947672
            KEGG:ecj:Y75_p3086 KEGG:eco:b3164 PATRIC:32121746 EchoBASE:EB0736
            EcoGene:EG10743 BioCyc:EcoCyc:EG10743-MONOMER
            BioCyc:ECOL316407:JW5851-MONOMER BioCyc:MetaCyc:EG10743-MONOMER
            EvolutionaryTrace:P05055 Genevestigator:P05055 Uniprot:P05055
        Length = 711

 Score = 1304 (464.1 bits), Expect = 4.8e-133, P = 4.8e-133
 Identities = 286/712 (40%), Positives = 433/712 (60%)

Query:    55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
             +L     +F+ G   +TLETG +AR A  AV++ MD+T V  TV   K     +DF PLT
Sbjct:     1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query:   114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
             V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S 
Sbjct:    61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120

Query:   174 DGKQDPDIMAANATSAALMLSDXXXXXXXXXXXXXXXXXQFIVNPTMDELSLSDLNLVYA 233
             + + +PDI+A    SAAL LS                  Q+++NPT DEL  S L+LV A
Sbjct:   121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180

Query:   234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
              T    LM++ +A+ +SE  +   +   H +    ++    L ++AGK + +++   ++E
Sbjct:   181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240

Query:   294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
                 +V+ LAEA +   +  TD    K ER   +D I  +    L   +E  DE  L  +
Sbjct:   241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296

Query:   349 PKAVDTXXXXXXXXXXXAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
               A++            A   R+DGR+ D +R +   +G LP  HGS+LF+RG+TQ L T
Sbjct:   297 LHAIEKNVVRSRVL---AGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353

Query:   409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
              TLG   +AQ L+ L+G  T  F+ HY+FPP+ + E G      RRE+GHG LA++ +LA
Sbjct:   354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413

Query:   469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
             V+P  + FPYTVRV SE+  S+GS+SMA+VCG S+ALMDAG+P++  VAG+++GLV E D
Sbjct:   414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473

Query:   529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
                    +Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK  GI  +I+   L  A
Sbjct:   474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526

Query:   589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
                RL IL  ME+ I+APR      +PR+ T+K + D ++ +IG  G++ R + EETG  
Sbjct:   527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586

Query:   649 ISVSD-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
             I + D GT+ + A +    +  + +++ I   EIEVG +Y G VT + ++GAFV   GG+
Sbjct:   587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 645

Query:   708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE 759
             +GL+H+S+++ + V +V+D + +GQ++ ++ +  D +G I+LS+K  + + +
Sbjct:   646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQ 697


>TIGR_CMR|BA_3944 [details] [associations]
            symbol:BA_3944 "polyribonucleotide nucleotidyltransferase"
            species:198094 "Bacillus anthracis str. Ames" [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0004654 "polyribonucleotide
            nucleotidyltransferase activity" evidence=ISS] [GO:0006402 "mRNA
            catabolic process" evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
            InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
            PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
            InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
            EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
            GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
            InterPro:IPR022967 SMART:SM00316 HSSP:P05055 Pfam:PF03725
            SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962 GO:GO:0004654
            Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
            ProtClustDB:PRK11824 RefSeq:NP_846188.1 RefSeq:YP_020583.1
            RefSeq:YP_029909.1 ProteinModelPortal:Q81WM8 IntAct:Q81WM8
            DNASU:1086877 EnsemblBacteria:EBBACT00000009810
            EnsemblBacteria:EBBACT00000017999 EnsemblBacteria:EBBACT00000024497
            GeneID:1086877 GeneID:2814451 GeneID:2852317 KEGG:ban:BA_3944
            KEGG:bar:GBAA_3944 KEGG:bat:BAS3658
            BioCyc:BANT260799:GJAJ-3716-MONOMER
            BioCyc:BANT261594:GJ7F-3832-MONOMER Uniprot:Q81WM8
        Length = 712

 Score = 1297 (461.6 bits), Expect = 2.7e-132, P = 2.7e-132
 Identities = 279/693 (40%), Positives = 425/693 (61%)

Query:    64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
             ++  R +T+ETG++A+ ANGAV++   +T VLST T+SK     DF PLTV+Y+E+ +A 
Sbjct:    11 DLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAV 70

Query:   124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
             G IP  +++REG P E+ +L  R+IDRPIRPLF  GF +EVQV+  V+S D     ++ A
Sbjct:    71 GKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVNIVMSVDQDCSSEMAA 130

Query:   184 ANATSAALMLSDXXXXXXXXXXXXXXXXXQFIVNPTMDELSLSDLNLVYACTREKTLMID 243
                +S AL +SD                 +F++NPT+++   SD++LV A T++   M++
Sbjct:   131 MLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINMVE 190

Query:   244 VQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLA 303
               A ++ E+ +   +   H E  + +  Q  + +  GK+K E KL  +     + V  +A
Sbjct:   191 AGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVREMA 250

Query:   304 EAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTXXXXXXXX 362
             E  + +      + K  R +A++++ + V +  E +E D ++L  + + +          
Sbjct:   251 EKDMHSAIQ--VHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVRR 308

Query:   363 XXXAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLES 422
                 E +R DGR+ DE+RP+  E G L   HGS LF+RG TQ L   TLGA  + Q L+ 
Sbjct:   309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368

Query:   423 LVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRV 482
             L    +KRFM HY+FP F + E     G  RRE+GHG L E+AL  V+P E DFPYTVR+
Sbjct:   369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428

Query:   483 NSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTD 542
              SEV+ S+GSTS A++CG ++A+MDAG+PL+  VAG+++GLV      TGE   Y IL+D
Sbjct:   429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVK-----TGE--HYTILSD 481

Query:   543 ILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMERE 602
             I G+EDHLGDMDFK+AGT  GVTA+Q+DIK  G+  +I+ E L+ A  GR+ IL+HM   
Sbjct:   482 IQGMEDHLGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSV 541

Query:   603 ISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVVAK 661
             I+ PRT+    +P++ T+  + D +R +IGP G    KI EETG +I +  DGT+ + + 
Sbjct:   542 IAEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSI 601

Query:   662 NRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPV 721
             N+ + +K  + ++ I+ RE++VG IY+G V  V+++GAFVE   G+ GL+H+SEL+ E V
Sbjct:   602 NQEMNDKAKKIIEDIV-REVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERV 660

Query:   722 SRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
              +V DVV +G  ++++ I  D +G + LS K +
Sbjct:   661 GKVEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693


>TIGR_CMR|SO_1209 [details] [associations]
            symbol:SO_1209 "polyribonucleotide nucleotidyltransferase"
            species:211586 "Shewanella oneidensis MR-1" [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0004654 "polyribonucleotide
            nucleotidyltransferase activity" evidence=ISS] [GO:0006402 "mRNA
            catabolic process" evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR009019
            InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
            Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
            SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
            GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 EMBL:AE014299
            GenomeReviews:AE014299_GR GO:GO:0006402 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
            SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
            HSSP:P05055 SUPFAM:SSF54814 Pfam:PF03725 SUPFAM:SSF55666
            eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
            PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591
            HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:NP_716833.2
            ProteinModelPortal:Q8EHL1 SMR:Q8EHL1 GeneID:1169037
            KEGG:son:SO_1209 PATRIC:23522076 Uniprot:Q8EHL1
        Length = 699

 Score = 1275 (453.9 bits), Expect = 5.7e-130, P = 5.7e-130
 Identities = 276/705 (39%), Positives = 426/705 (60%)

Query:    61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEK 119
             + FE G   +TLETG IAR A+ AV+  M +T VL TV   K  ++ RDF PLTV+YQEK
Sbjct:     6 KSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEK 65

Query:   120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
              +A G IP  + +REG P E E L+ R+IDRPIRPLFP GF +EVQV+ +V+S D + +P
Sbjct:    66 TYAAGKIPGGFFKREGRPSEEETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEIEP 125

Query:   180 DIMAANATSAALMLSDXXXXXXXXXXXXXXXXXQFIVNPTMDELSLSDLNLVYACTREKT 239
             DI++   TSAAL +S                  ++++NPT+ ++  S LNLV A T    
Sbjct:   126 DIISMIGTSAALAISGIPFNGPLGAARVGYINGEYVLNPTVKQIGASQLNLVVAGTESAV 185

Query:   240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
             LM++ +A+ + E+ +   +   H +    ++       +AGK   ++   +  E  + ++
Sbjct:   186 LMVESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPTWDWTAPVEDEALVAQI 245

Query:   300 SNLAEA-HIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTXXXX 358
               LAEA  IEA        ++ +   +    ++   A   + D   +  L  +++     
Sbjct:   246 KELAEAGFIEAYQIQVKQERYAQVAVVKAAAKEALLAANPDVDLREVDNLLGSLEKKVVR 305

Query:   359 XXXXXXXAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
                        R+DGR+ D VR +   +G LP  HGS+LF+RG+TQ L T TLG   +AQ
Sbjct:   306 GRILRGMP---RIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQ 362

Query:   419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
             +++S++G  T RFMLHY+FPP+ + E G      RRE+GHG LA + + AV+P   +FPY
Sbjct:   363 KIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEEFPY 422

Query:   479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
             +VRV SE+  S+GS+SMA+VCG S+ALMDAG+P++  VAG+++GLV E D       D+ 
Sbjct:   423 SVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGD-------DFV 475

Query:   539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
             +L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK  GI  +I+   L+ A+  R+ IL+ 
Sbjct:   476 VLSDILGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNV 535

Query:   599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLT 657
             M++ I + R     ++PR+ T+K + + +R +IG  GA+ R + EETG  I + D GT+ 
Sbjct:   536 MDQAIGSHRADISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVK 595

Query:   658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
             + + N    ++ + +++ I   E+EVG IY G V  + ++GAFV    G+ GL+H+S++S
Sbjct:   596 IASSNGEATKEAIRRIEEITS-EVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQIS 654

Query:   718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSPRPEAD 761
              E V+ VSD + + Q+++++ +  D +G ++LS+K A +  P A+
Sbjct:   655 DERVANVSDHLELNQEVTVKVMEVDRQGRVRLSIKEAQTKEPAAE 699


>UNIPROTKB|Q8TCS8 [details] [associations]
            symbol:PNPT1 "Polyribonucleotide nucleotidyltransferase 1,
            mitochondrial" species:9606 "Homo sapiens" [GO:0035458 "cellular
            response to interferon-beta" evidence=IDA] [GO:0061014 "positive
            regulation of mRNA catabolic process" evidence=IMP] [GO:0035927
            "RNA import into mitochondrion" evidence=IDA] [GO:0000964
            "mitochondrial RNA 5'-end processing" evidence=IMP] [GO:0000965
            "mitochondrial RNA 3'-end processing" evidence=IMP] [GO:0097222
            "mitochondrial mRNA polyadenylation" evidence=IMP] [GO:0070207
            "protein homotrimerization" evidence=IDA] [GO:0000175
            "3'-5'-exoribonuclease activity" evidence=IDA] [GO:0008266 "poly(U)
            RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
            evidence=IDA] [GO:0000962 "positive regulation of mitochondrial RNA
            catabolic process" evidence=IDA] [GO:0004654 "polyribonucleotide
            nucleotidyltransferase activity" evidence=IDA] [GO:0006401 "RNA
            catabolic process" evidence=IDA] [GO:0043631 "RNA polyadenylation"
            evidence=IDA] [GO:0034599 "cellular response to oxidative stress"
            evidence=IDA] [GO:0000957 "mitochondrial RNA catabolic process"
            evidence=IDA] [GO:0006402 "mRNA catabolic process" evidence=IDA]
            [GO:0045926 "negative regulation of growth" evidence=IDA]
            [GO:0071850 "mitotic cell cycle arrest" evidence=IDA] [GO:2000627
            "positive regulation of miRNA catabolic process" evidence=IDA]
            [GO:0035198 "miRNA binding" evidence=IDA] [GO:0005758
            "mitochondrial intermembrane space" evidence=IDA] [GO:0005739
            "mitochondrion" evidence=IDA] [GO:0051260 "protein
            homooligomerization" evidence=IDA] [GO:0000958 "mitochondrial mRNA
            catabolic process" evidence=IDA] [GO:0045025 "mitochondrial
            degradosome" evidence=IDA] [GO:0035928 "rRNA import into
            mitochondrion" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0071042 "nuclear polyadenylation-dependent mRNA
            catabolic process" evidence=IDA] [GO:0043457 "regulation of
            cellular respiration" evidence=ISS] [GO:0070584 "mitochondrion
            morphogenesis" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
            [GO:2000772 "regulation of cellular senescence" evidence=IDA]
            [GO:0005886 "plasma membrane" evidence=IDA] InterPro:IPR003029
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
            InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
            PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
            InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005886
            GO:GO:0008266 GO:GO:0005758 GO:GO:0034599 GO:GO:0045926
            GO:GO:0035198 GO:GO:0070207 GO:GO:0035458 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
            SUPFAM:SSF54211 GO:GO:0034046 GO:GO:0070584 GO:GO:0000958
            GO:GO:0071850 GO:GO:0000175 GO:GO:0043457 GO:GO:0071042
            InterPro:IPR022967 SMART:SM00316 GO:GO:0045025 Pfam:PF03725
            SUPFAM:SSF55666 GO:GO:0061014 GO:GO:2000772 eggNOG:COG1185
            EMBL:AC015982 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
            PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 EMBL:AJ458465
            EMBL:AY027528 EMBL:BC000862 EMBL:BC005986 EMBL:BC053660
            EMBL:AY290863 EMBL:CR749867 IPI:IPI00744711 PIR:T50626
            RefSeq:NP_149100.2 UniGene:Hs.388733 PDB:3U1K PDBsum:3U1K
            ProteinModelPortal:Q8TCS8 SMR:Q8TCS8 STRING:Q8TCS8
            PhosphoSite:Q8TCS8 DMDM:115502437 REPRODUCTION-2DPAGE:IPI00291165
            PaxDb:Q8TCS8 PeptideAtlas:Q8TCS8 PRIDE:Q8TCS8
            Ensembl:ENST00000415374 Ensembl:ENST00000447944 GeneID:87178
            KEGG:hsa:87178 UCSC:uc002rzf.2 CTD:87178 GeneCards:GC02M055861
            H-InvDB:HIX0023979 HGNC:HGNC:23166 HPA:HPA034603 MIM:610316
            neXtProt:NX_Q8TCS8 PharmGKB:PA134915354 HOVERGEN:HBG053625
            InParanoid:Q8TCS8 OMA:YTMRVVS OrthoDB:EOG4T4CTT PhylomeDB:Q8TCS8
            BRENDA:2.7.7.8 GenomeRNAi:87178 NextBio:76209 ArrayExpress:Q8TCS8
            Bgee:Q8TCS8 CleanEx:HS_PNPT1 Genevestigator:Q8TCS8
            GermOnline:ENSG00000138035 GO:GO:0097222 GO:GO:0000965
            GO:GO:0000964 GO:GO:2000627 GO:GO:0000962 GO:GO:0035928
            Uniprot:Q8TCS8
        Length = 783

 Score = 1262 (449.3 bits), Expect = 1.4e-128, P = 1.4e-128
 Identities = 278/735 (37%), Positives = 426/735 (57%)

Query:    64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
             ++G+R + + +GK+ARFA+G+ V+   +T V+ T  S    S   F+PL VDY++K  A 
Sbjct:    50 DLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAA 109

Query:   124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
             G IP  Y+RRE    ++E+L  RIIDR IRPLFPAG++++ QV+ ++L+ DG  +PD++A
Sbjct:   110 GRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLA 169

Query:   184 ANATSAALMLSDXXXXXXXXXXXXXXXXXQFIVNPTMDELSLSDLNLVYA-CTREKTLMI 242
              N  S AL LSD                 +++VNPT  E+S S LNLV A   + + +M+
Sbjct:   170 INGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPKSQIVML 229

Query:   243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKE-YKLSMISEQTLEKVSN 301
             +  A  I ++D    +++      + ++   +L ++ G  K+   KL   S + ++    
Sbjct:   230 EASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKLFTPSPEIVKYTHK 289

Query:   302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTXXXXXXX 361
             LA   + AVFTD  + K  R EA++KI  D ++ L+E+  E     + ++ +        
Sbjct:   290 LAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIESFNVVAKEVFR 349

Query:   362 XXXXAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
                  E  R DGR L  +R + CE      LHGS+LF RG TQVLCTVT  +     + +
Sbjct:   350 SIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSD 409

Query:   422 SLV----GPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
              ++    G   K FMLHY FPP+  NE+GK  GLNRRE+GHG LAEKAL  V+P   DFP
Sbjct:   410 QVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIP--RDFP 467

Query:   478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
             +T+RV SEV+ S+GS+SMA+ CGGS+ALMD+G+P+   VAGV++GLV++ DP  GEI+DY
Sbjct:   468 FTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGEIEDY 527

Query:   538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
             R+LTDILG+ED+ GDMDFKIAGT  G+TA+Q DIK  GIP+ I+ E ++ A   + +IL 
Sbjct:   528 RLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKKEILQ 587

Query:   598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS-VSDGTL 656
              M + IS PR     N P + T++       + +GP G   +K++ ETG  IS V + T 
Sbjct:   588 IMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDEETF 647

Query:   657 TVVAKNRSVMEKVLEKVDFIIG----REIEVGGIYKGVVTSVKEYGAFVEFNGGQQG-LL 711
             +V A   S M +  + +  I      +++E G +Y   +T +++ G  V+        LL
Sbjct:   648 SVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTAVLL 707

Query:   712 HVSELSHEPVSRVSDV-VSVGQQLSLRCIGQD-VRGNIKLSLKAV-SP-----RPEADVK 763
             H ++L    +   + + + VGQ++ ++  G+D   G ++LS K + SP     R   D  
Sbjct:   708 HNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVLQSPATTVVRTLNDRS 767

Query:   764 GVVEGSVPVNKQATD 778
              +V G  P+++ +++
Sbjct:   768 SIVMGE-PISQSSSN 781


>UNIPROTKB|Q5RCW2 [details] [associations]
            symbol:PNPT1 "Polyribonucleotide nucleotidyltransferase 1,
            mitochondrial" species:9601 "Pongo abelii" [GO:0000175
            "3'-5'-exoribonuclease activity" evidence=ISS] [GO:0000957
            "mitochondrial RNA catabolic process" evidence=ISS] [GO:0000958
            "mitochondrial mRNA catabolic process" evidence=ISS] [GO:0000962
            "positive regulation of mitochondrial RNA catabolic process"
            evidence=ISS] [GO:0000964 "mitochondrial RNA 5'-end processing"
            evidence=ISS] [GO:0000965 "mitochondrial RNA 3'-end processing"
            evidence=ISS] [GO:0004654 "polyribonucleotide
            nucleotidyltransferase activity" evidence=ISS] [GO:0005739
            "mitochondrion" evidence=ISS] [GO:0006401 "RNA catabolic process"
            evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
            [GO:0008266 "poly(U) RNA binding" evidence=ISS] [GO:0034046
            "poly(G) RNA binding" evidence=ISS] [GO:0034599 "cellular response
            to oxidative stress" evidence=ISS] [GO:0035198 "miRNA binding"
            evidence=ISS] [GO:0035927 "RNA import into mitochondrion"
            evidence=ISS] [GO:0035928 "rRNA import into mitochondrion"
            evidence=ISS] [GO:0043457 "regulation of cellular respiration"
            evidence=ISS] [GO:0043631 "RNA polyadenylation" evidence=ISS]
            [GO:0045025 "mitochondrial degradosome" evidence=ISS] [GO:0045926
            "negative regulation of growth" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0061014 "positive regulation
            of mRNA catabolic process" evidence=ISS] [GO:0070207 "protein
            homotrimerization" evidence=ISS] [GO:0070584 "mitochondrion
            morphogenesis" evidence=ISS] [GO:0071042 "nuclear
            polyadenylation-dependent mRNA catabolic process" evidence=ISS]
            [GO:0071850 "mitotic cell cycle arrest" evidence=ISS] [GO:0097222
            "mitochondrial mRNA polyadenylation" evidence=ISS] [GO:2000627
            "positive regulation of miRNA catabolic process" evidence=ISS]
            [GO:2000772 "regulation of cellular senescence" evidence=ISS]
            InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
            InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
            Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
            SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
            GO:GO:0008266 GO:GO:0016020 GO:GO:0005758 GO:GO:0034599
            GO:GO:0045926 GO:GO:0035198 GO:GO:0070207 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
            SUPFAM:SSF54211 GO:GO:0034046 GO:GO:0070584 GO:GO:0000958
            GO:GO:0071850 GO:GO:0000175 GO:GO:0043457 GO:GO:0071042
            InterPro:IPR022967 SMART:SM00316 GO:GO:0045025 Pfam:PF03725
            SUPFAM:SSF55666 GO:GO:0061014 GO:GO:2000772 KO:K00962 GO:GO:0004654
            Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 CTD:87178 HOVERGEN:HBG053625 GO:GO:0097222
            GO:GO:0000965 GO:GO:0000964 GO:GO:2000627 GO:GO:0000962
            GO:GO:0035928 EMBL:CR858156 RefSeq:NP_001125193.1 UniGene:Pab.14131
            ProteinModelPortal:Q5RCW2 SMR:Q5RCW2 PRIDE:Q5RCW2 GeneID:100172084
            KEGG:pon:100172084 Uniprot:Q5RCW2
        Length = 783

 Score = 1255 (446.8 bits), Expect = 7.6e-128, P = 7.6e-128
 Identities = 277/735 (37%), Positives = 426/735 (57%)

Query:    64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
             ++G+R + + +GK+ARFA+G+ V+   +T V+ T  S    S   F+PL VDY++K  A 
Sbjct:    50 DLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAA 109

Query:   124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
             G IP  Y+RRE    ++E+L  RIIDR IRPLFPAG++++ QV+ ++L+ DG  +PD++A
Sbjct:   110 GRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLA 169

Query:   184 ANATSAALMLSDXXXXXXXXXXXXXXXXXQFIVNPTMDELSLSDLNLVYA-CTREKTLMI 242
              N  S AL LSD                 + +VNPT  E+S S LNLV A   + + +M+
Sbjct:   170 INGASVALSLSDIPWNGPVGAVRIGIIDGECVVNPTRKEMSSSTLNLVVAGAPKSQIVML 229

Query:   243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKE-YKLSMISEQTLEKVSN 301
             +  A  I ++D    +++      + ++   +L ++ G  K+   KL   S + ++    
Sbjct:   230 EASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKLFTPSPEIVKHTHK 289

Query:   302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTXXXXXXX 361
             LA   + AVFTD  + K  R EA++KI  D ++ L+E+  +     + ++ +        
Sbjct:   290 LAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPQADPYEIIESFNVVAKEVFR 349

Query:   362 XXXXAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
                  E  R DGR L  +R + CE      LHGS+LF RG TQVLCTVT  +     + +
Sbjct:   350 NIILNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSD 409

Query:   422 SLV----GPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
              ++    G   K FMLHY FPP+  NE+GK  GLNRRE+GHG LAEKAL  V+P   DFP
Sbjct:   410 QVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIP--RDFP 467

Query:   478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
             +T+RV SEV+ S+GS+SMA+ CGGS+ALMD+G+P+   VAGV++GLV++ DP  GEI+DY
Sbjct:   468 FTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGEIEDY 527

Query:   538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
             R+LTDILG+ED+ GDMDFKIAGT  G+TA+Q DIK  GIP+ I+ E ++ A   + +IL 
Sbjct:   528 RLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKKEILQ 587

Query:   598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS-VSDGTL 656
              M + IS PRT    N P + T++       + +GP G   +K++ ETG  IS V + T 
Sbjct:   588 IMNKTISKPRTSRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDEETF 647

Query:   657 TVVAKNRSVMEKVLEKVDFIIG----REIEVGGIYKGVVTSVKEYGAFVEFNGGQQG-LL 711
             +V A   S + +  + +  I      +++E G +Y   +T +++ G  V+        LL
Sbjct:   648 SVFAPTPSALHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTAVLL 707

Query:   712 HVSELSHEPVSRVSDV-VSVGQQLSLRCIGQD-VRGNIKLSLKAV-SP-----RPEADVK 763
             H ++L    +   + + + VGQ++ ++  G+D   G ++LS K + SP     R   D  
Sbjct:   708 HNTQLDQRKIRHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVLQSPATTVVRTLNDRS 767

Query:   764 GVVEGSVPVNKQATD 778
              +V G  P+++ +++
Sbjct:   768 SIVMGE-PISQSSSN 781


>UNIPROTKB|E1BIQ0 [details] [associations]
            symbol:PNPT1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:2000772 "regulation of cellular senescence"
            evidence=IEA] [GO:2000627 "positive regulation of miRNA catabolic
            process" evidence=IEA] [GO:0097222 "mitochondrial mRNA
            polyadenylation" evidence=IEA] [GO:0071850 "mitotic cell cycle
            arrest" evidence=IEA] [GO:0071042 "nuclear
            polyadenylation-dependent mRNA catabolic process" evidence=IEA]
            [GO:0070584 "mitochondrion morphogenesis" evidence=IEA] [GO:0070207
            "protein homotrimerization" evidence=IEA] [GO:0061014 "positive
            regulation of mRNA catabolic process" evidence=IEA] [GO:0045926
            "negative regulation of growth" evidence=IEA] [GO:0045025
            "mitochondrial degradosome" evidence=IEA] [GO:0043457 "regulation
            of cellular respiration" evidence=IEA] [GO:0035928 "rRNA import
            into mitochondrion" evidence=IEA] [GO:0035458 "cellular response to
            interferon-beta" evidence=IEA] [GO:0035198 "miRNA binding"
            evidence=IEA] [GO:0034599 "cellular response to oxidative stress"
            evidence=IEA] [GO:0034046 "poly(G) RNA binding" evidence=IEA]
            [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005886 "plasma
            membrane" evidence=IEA] [GO:0005758 "mitochondrial intermembrane
            space" evidence=IEA] [GO:0004654 "polyribonucleotide
            nucleotidyltransferase activity" evidence=IEA] [GO:0000965
            "mitochondrial RNA 3'-end processing" evidence=IEA] [GO:0000964
            "mitochondrial RNA 5'-end processing" evidence=IEA] [GO:0000962
            "positive regulation of mitochondrial RNA catabolic process"
            evidence=IEA] [GO:0000958 "mitochondrial mRNA catabolic process"
            evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
            evidence=IEA] InterPro:IPR003029 InterPro:IPR004087
            InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
            Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
            PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
            InterPro:IPR015847 Pfam:PF01138 GO:GO:0005886 GO:GO:0008266
            GO:GO:0005758 GO:GO:0034599 GO:GO:0006378 GO:GO:0045926
            GO:GO:0035198 GO:GO:0070207 GO:GO:0035458 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
            SUPFAM:SSF54211 GO:GO:0034046 GO:GO:0070584 GO:GO:0000958
            GO:GO:0071850 GO:GO:0000175 GO:GO:0043457 GO:GO:0071042
            InterPro:IPR022967 SMART:SM00316 GO:GO:0045025 Pfam:PF03725
            SUPFAM:SSF55666 GO:GO:0061014 GO:GO:2000772 KO:K00962 GO:GO:0004654
            Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 CTD:87178 OMA:YTMRVVS GO:GO:0000965
            GO:GO:0000964 GO:GO:2000627 GO:GO:0000962 GO:GO:0035928
            GeneTree:ENSGT00390000014001 EMBL:DAAA02030915 EMBL:DAAA02030914
            IPI:IPI00700535 RefSeq:NP_001179126.1 UniGene:Bt.45909
            ProteinModelPortal:E1BIQ0 Ensembl:ENSBTAT00000011729 GeneID:508877
            KEGG:bta:508877 NextBio:20868715 Uniprot:E1BIQ0
        Length = 783

 Score = 1251 (445.4 bits), Expect = 2.0e-127, P = 2.0e-127
 Identities = 273/709 (38%), Positives = 419/709 (59%)

Query:    64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
             ++GSR + + +GK+ARFA+G+ V+   +T V+ T  S    S   F+PL VDY++K  A 
Sbjct:    50 DLGSRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAA 109

Query:   124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
             G IP  Y+RRE    ++E+L  R+IDR IRPLFPAG++++ Q++ ++L+ DG  +PD++A
Sbjct:   110 GRIPTNYLRREIGSSDKEILTSRVIDRSIRPLFPAGYFYDTQILCNLLAVDGVNEPDVLA 169

Query:   184 ANATSAALMLSDXXXXXXXXXXXXXXXXXQFIVNPTMDELSLSDLNLVYA-CTREKTLMI 242
              N  S AL LSD                 + +VNPT  E++ S LNLV     + + +M+
Sbjct:   170 INGASVALSLSDIPWNGPIGAVRIGMIDGECVVNPTRKEMANSTLNLVVTGAPKSQIVML 229

Query:   243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKE-YKLSMISEQTLEKVSN 301
             +  A  I ++D    +++      + ++   +L ++ G  K+   KL + S + ++    
Sbjct:   230 EASAENILQQDFCHAIKVGVKHTQQIIQGIQQLVKENGVTKRTPQKLFVPSPEIVKHAHK 289

Query:   302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE-ESLQVLPKAVDTXXXXXX 360
             LA   +  VFTD  + K  R EA++KI  D ++ L+E+  E +S +++ ++ +       
Sbjct:   290 LAMEKLYTVFTDYEHDKISRDEAINKIRLDTEEQLKEKFPEVDSCEII-ESFNIATKDVF 348

Query:   361 XXXXXAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT---LGAPAEA 417
                   E  R DGR L  +R I CE     ILHGSSLF RG TQVLCTVT   L +  ++
Sbjct:   349 RSIILNEYKRCDGRDLTSLRNINCEVDMFKILHGSSLFQRGQTQVLCTVTFDSLESNFKS 408

Query:   418 QRLESLV-GPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
              R+ + + G   K FMLHY FPP+  NE+GK  G+NRRE+GHG LAE+AL  V+P   DF
Sbjct:   409 DRIITAINGIKDKNFMLHYEFPPYATNEIGKVTGINRRELGHGALAERALYPVIP--KDF 466

Query:   477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
             P+T+RV SEV+ S+GS+SMA+ CGGS+ALMDAG+P+   VAGV++GLV++  P  GEI+D
Sbjct:   467 PFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAIGLVTKNSPDKGEIED 526

Query:   537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
             YR+LTDILG+ED+ GDMDFKIAGT  G+TA+Q DIK  GIP+ I+ E ++ A   + +IL
Sbjct:   527 YRLLTDILGIEDYHGDMDFKIAGTSKGITALQADIKLPGIPIKIVMEAIQQASVAKKEIL 586

Query:   597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS-VSDGT 655
               M + IS PR     N P + T++       + +GP G   +K++ ETG  IS V + T
Sbjct:   587 QIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYHLKKLQAETGVTISQVDEET 646

Query:   656 LTVVAKNRSVMEKVLEKVDFIIG----REIEVGGIYKGVVTSVKEYGAFVEFNGGQQG-L 710
              ++ A   S M +  + +  I      +++E G +Y   +T +++ G  V+        L
Sbjct:   647 FSIFAPTPSAMHEARDFITDICRDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTAVL 706

Query:   711 LHVSELSHEPVSRVSDV-VSVGQQLSLRCIGQD-VRGNIKLSLKAV-SP 756
             LH ++L    +   S + + VGQ++ ++  G+D   G ++LS K + SP
Sbjct:   707 LHNTQLDQRKIKHPSALGLEVGQEIQVKYFGRDPADGRMRLSRKVLQSP 755


>TIGR_CMR|CPS_2207 [details] [associations]
            symbol:CPS_2207 "polyribonucleotide
            nucleotidyltransferase" species:167879 "Colwellia psychrerythraea
            34H" [GO:0004654 "polyribonucleotide nucleotidyltransferase
            activity" evidence=ISS] [GO:0006402 "mRNA catabolic process"
            evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
            InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
            Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
            PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
            InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
            GO:GO:0006396 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0006402
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
            SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
            GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
            ProtClustDB:PRK11824 RefSeq:YP_268932.1 ProteinModelPortal:Q482T5
            SMR:Q482T5 STRING:Q482T5 GeneID:3518463 KEGG:cps:CPS_2207
            PATRIC:21467529 BioCyc:CPSY167879:GI48-2277-MONOMER Uniprot:Q482T5
        Length = 705

 Score = 1250 (445.1 bits), Expect = 2.6e-127, P = 2.6e-127
 Identities = 275/715 (38%), Positives = 414/715 (57%)

Query:    55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
             +L    ++F++G   +TLETG IAR A+ AV+  MD+T VL +V   K     +DF PLT
Sbjct:     1 MLNPITKKFQLGKHTVTLETGAIARQASAAVMASMDDTCVLVSVVGKKEAKPGQDFFPLT 60

Query:   114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
             V+YQE+ +A G IP ++ +REG P E E L+ R+IDRPIRPLFP GF +EVQV+ +V+S 
Sbjct:    61 VNYQERAYAAGKIPGSFFKREGRPSEEETLIARLIDRPIRPLFPEGFTNEVQVIITVVSV 120

Query:   174 DGKQDPDIMAANATSAALMLSDXXXXXXXXXXXXXXXXXQFIVNPTMDELSLSDLNLVYA 233
             + +  PDI++   TSAAL +S                  Q+I+NP   EL  S L+LV +
Sbjct:   121 NPEIAPDIISLIGTSAALAISGLPFSGPVGAARVGYTDGQYILNPLQSELPTSQLDLVVS 180

Query:   234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
              T    LM++ +A  +SE+ +   +   H +    +        +      ++   + + 
Sbjct:   181 GTDSAVLMVESEADVLSEEVMLGAVVYGHEQMQVAVSAIKEFKAEVNTPSWDWVAPVKNA 240

Query:   294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
             + L K++ L+EA +   +      K  R E + +I   V +AL  E  +  +Q       
Sbjct:   241 ELLAKIAELSEAQVNEAYQITE--KAVRYEKIKEIRSSVLEALLAENADVDVQEAKDLFH 298

Query:   354 TXXXXXXXXXXXAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
                             R+DGR  + +R +   +G LP  HGS++F+RG+TQ L T TLG 
Sbjct:   299 DLEKTVVRGRITDGNPRIDGRDPESIRALDVMTGVLPRTHGSAVFTRGETQALVTATLGT 358

Query:   414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
               +AQRL++L+G  T  FMLHY+FPP+C+ E G      RRE+GHG LA++ +LAV+P  
Sbjct:   359 QRDAQRLDTLMGDKTDPFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGMLAVMPSL 418

Query:   474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
              +FPY VRV SE+  S+GS+SMA+VCG S+ALMDAG+P++  VAG+++GLV E     GE
Sbjct:   419 EEFPYAVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKE-----GE 473

Query:   534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
                + +L+DILG EDHLGDMDFK+AGT  G+TA+Q+DIK  GI  +I+   L  A   R 
Sbjct:   474 --KFVVLSDILGDEDHLGDMDFKVAGTTGGITALQMDIKIEGITQEIMQIALNQAKAART 531

Query:   594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD 653
              IL  M+  I   R      +PR+ T+K   D +R +IG  GA  R++ EETG  I + D
Sbjct:   532 HILSVMDEAIGGHRDDISEFAPRIHTMKVSQDKIRDIIGKGGATIRQLTEETGTTIEIED 591

Query:   654 -GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
              GT+ + A +    E  + ++  +   EIEVG +Y G V  + ++GAFV    G+ GL+H
Sbjct:   592 DGTVKIAATSGEQAEDAINRIKALTA-EIEVGTLYTGKVVRIVDFGAFVNVLPGKDGLVH 650

Query:   713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVE 767
             +S++S E V+ VS+V++ GQ++ ++ +  D +G ++LS+K    +P A+     E
Sbjct:   651 ISQISEERVNNVSEVLTEGQEVKVKVLEVDRQGRVRLSIKEAMEKPAAEATPAAE 705


>UNIPROTKB|G3V6G7 [details] [associations]
            symbol:Pnpt1 "Polyribonucleotide nucleotidyltransferase 1"
            species:10116 "Rattus norvegicus" [GO:0000175
            "3'-5'-exoribonuclease activity" evidence=IEA] [GO:0000958
            "mitochondrial mRNA catabolic process" evidence=IEA] [GO:0000962
            "positive regulation of mitochondrial RNA catabolic process"
            evidence=IEA] [GO:0000964 "mitochondrial RNA 5'-end processing"
            evidence=IEA] [GO:0000965 "mitochondrial RNA 3'-end processing"
            evidence=IEA] [GO:0004654 "polyribonucleotide
            nucleotidyltransferase activity" evidence=IEA] [GO:0005758
            "mitochondrial intermembrane space" evidence=IEA] [GO:0005886
            "plasma membrane" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
            evidence=IEA] [GO:0034046 "poly(G) RNA binding" evidence=IEA]
            [GO:0034599 "cellular response to oxidative stress" evidence=IEA]
            [GO:0035198 "miRNA binding" evidence=IEA] [GO:0035458 "cellular
            response to interferon-beta" evidence=IEA] [GO:0035928 "rRNA import
            into mitochondrion" evidence=IEA] [GO:0043457 "regulation of
            cellular respiration" evidence=IEA] [GO:0045025 "mitochondrial
            degradosome" evidence=IEA] [GO:0045926 "negative regulation of
            growth" evidence=IEA] [GO:0061014 "positive regulation of mRNA
            catabolic process" evidence=IEA] [GO:0070207 "protein
            homotrimerization" evidence=IEA] [GO:0070584 "mitochondrion
            morphogenesis" evidence=IEA] [GO:0071042 "nuclear
            polyadenylation-dependent mRNA catabolic process" evidence=IEA]
            [GO:0071850 "mitotic cell cycle arrest" evidence=IEA] [GO:0097222
            "mitochondrial mRNA polyadenylation" evidence=IEA] [GO:2000627
            "positive regulation of miRNA catabolic process" evidence=IEA]
            [GO:2000772 "regulation of cellular senescence" evidence=IEA]
            InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
            InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
            Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
            SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
            RGD:1307987 GO:GO:0003723 GO:GO:0006396 GO:GO:0006402
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
            SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 KO:K00962 GO:GO:0004654
            Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 CTD:87178 GeneTree:ENSGT00390000014001
            EMBL:CH473996 RefSeq:NP_001135843.1 UniGene:Rn.23118
            ProteinModelPortal:G3V6G7 Ensembl:ENSRNOT00000004919 GeneID:360992
            KEGG:rno:360992 NextBio:674815 Uniprot:G3V6G7
        Length = 784

 Score = 1250 (445.1 bits), Expect = 2.6e-127, P = 2.6e-127
 Identities = 275/709 (38%), Positives = 416/709 (58%)

Query:    64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
             ++G R + + +GK+ARFA+G  V+   +T V+ T  S    S   F+PL VDY++K  A 
Sbjct:    50 DLGHRKLEISSGKLARFADGCAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAA 109

Query:   124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
             G IP  Y+RRE    ++E+L  R+IDR IRPLFPAG++++ QV+ ++L+ DG  +PDI+A
Sbjct:   110 GRIPTNYLRREIGSSDKEILTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEPDILA 169

Query:   184 ANATSAALMLSDXXXXXXXXXXXXXXXXXQFIVNPTMDELSLSDLNLVYA-CTREKTLMI 242
              N  SAAL LSD                 + +VNPT  E+S S LNLV A   + + +M+
Sbjct:   170 INGASAALSLSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSSTLNLVVAGAPKSQIVML 229

Query:   243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKE-YKLSMISEQTLEKVSN 301
             +  A  I ++D    +++      + ++   +L ++ G  K+   K+   S + ++    
Sbjct:   230 EASAENILQQDFCHAIKVGVKYTQQIIQSIQQLVKEIGVAKRTPQKIFTPSAEIVKYTHT 289

Query:   302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE-ESLQVLPKAVDTXXXXXX 360
             +A   + AVFTD  + K  R EA++KI  D ++ L+E+  E + L+++ ++ +       
Sbjct:   290 IAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQLEII-ESFNVVAKEVF 348

Query:   361 XXXXXAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
                   E  R DGR L  +R I CE      LHGS+LF RG TQVLCTVT  +   + + 
Sbjct:   349 RSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKS 408

Query:   421 ESLV----GPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
             + ++    G   K FMLHY FPP+  NE GK  G+NRRE+GHG LAEKAL  V+P   DF
Sbjct:   409 DQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPVIP--KDF 466

Query:   477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
             P+T+RV SEV+ S+GS+SMA+ CGGS+ALMDAG+P+   VAGV+VGLV++ +P  GEI+D
Sbjct:   467 PFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKSNPEKGEIED 526

Query:   537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
             YR+LTDILG+ED+ GDMDFKIAGT  G+TA+Q DIK  G+P+ II E ++ A   + +IL
Sbjct:   527 YRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPVKIIMEAIQQATVAKREIL 586

Query:   597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS-VSDGT 655
               M + IS PR     N P + T+K       + IGP G   +K++ ETG  IS V + T
Sbjct:   587 QTMSKTISKPRASRKENGPVVETVKVPLSKRAKFIGPGGYHLKKLQAETGVTISQVDEET 646

Query:   656 LTVVAKNRSVMEKVLEKVDFIIG----REIEVGGIYKGVVTSVKEYGAFVEFNGGQQG-L 710
              ++ A   + M +  + +  I      +++E G +Y   +T +++ G  V+        L
Sbjct:   647 FSIFAPTPTAMHEARDFITEICRDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTAVL 706

Query:   711 LHVSELSHEPVSRVSDV-VSVGQQLSLRCIGQD-VRGNIKLSLKAV-SP 756
             LH S+L    +   + + + VGQ++ ++  G+D   G ++LS K + SP
Sbjct:   707 LHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVLQSP 755


>UNIPROTKB|Q3IJ73 [details] [associations]
            symbol:pnp "Polyribonucleotide nucleotidyltransferase"
            species:326442 "Pseudoalteromonas haloplanktis TAC125" [GO:0005515
            "protein binding" evidence=IPI] HAMAP:MF_01595 InterPro:IPR003029
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR009019
            InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
            Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
            SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
            GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 GO:GO:0006402
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
            SMART:SM00316 SUPFAM:SSF54814 HSSP:Q9UXC2 Pfam:PF03725
            SUPFAM:SSF55666 eggNOG:COG1185 HOGENOM:HOG000218327 KO:K00962
            GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 EMBL:CR954246
            RefSeq:YP_339522.1 ProteinModelPortal:Q3IJ73 SMR:Q3IJ73
            STRING:Q3IJ73 GeneID:3709905 GenomeReviews:CR954246_GR
            KEGG:pha:PSHAa1001 PATRIC:32295529
            BioCyc:PHAL326442:GJIU-1008-MONOMER Uniprot:Q3IJ73
        Length = 708

 Score = 1246 (443.7 bits), Expect = 6.8e-127, P = 6.8e-127
 Identities = 280/715 (39%), Positives = 426/715 (59%)

Query:    56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTV 114
             ++   +EF++G   +TLETG IAR A+GAV+  + +T VL TV   +     +DF PLTV
Sbjct:     1 MQAIIKEFQLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQPGQDFFPLTV 60

Query:   115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
             +YQE+ +A G IP  +++REG P + E L+ R+IDRPIRPLFP+GF +EVQV+A+V+S +
Sbjct:    61 NYQERMYAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPSGFVNEVQVIATVVSVN 120

Query:   175 GKQDPDIMAANATSAALMLSDXXXXXXXXXXXXXXXXXQFIVNPTMDELSLSDLNLVYAC 234
              +  PD++A   TSAAL +S                  ++++NPT+ EL  S L+LV A 
Sbjct:   121 PEIQPDMVALIGTSAALAISGIPFSGPIGATRVGYIDGEYVLNPTLKELEESKLDLVVAG 180

Query:   235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
             T    LM++ +A  ++E  +   +   H +A   +        +AGK   ++     +  
Sbjct:   181 TDNAVLMVESEADVLAEDIMLGAVVYGHEQAQAIITAIKEFKAEAGKPTWDWTAPAKNVS 240

Query:   295 TLEKVSNLAEAHI-EAV-FTDPSYSKFERGEALDKIGQDVKKALEEECDE-ESL--QVLP 349
               EKV+++A   + EA   TD    K  R EAL     +V   L  E  E ESL  Q + 
Sbjct:   241 LEEKVASIAADKVGEAYRITD----KVARKEALGVAKDEVVAVLTSELAEGESLDKQEIG 296

Query:   350 KAVDTXXXXXXXXXXXAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTV 409
             K   +           A   R+DGR+ D +R +   +G LP  HGS++F+RG+TQ L T 
Sbjct:   297 KIFGSLEKKIVRGRIAAGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTA 356

Query:   410 TLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAV 469
             TLG   ++Q ++ L G     FML+Y+FPPFC+ E G      RRE+GHG LA++ + AV
Sbjct:   357 TLGTERDSQLIDDLTGTHKNHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIAAV 416

Query:   470 LPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDP 529
             +P   +FPY++RV SE+  S+GS+SMA+VCG S+ALM+AG+P++  VAG+++GLV E D 
Sbjct:   417 MPTLTEFPYSIRVVSEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEDDK 476

Query:   530 STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
                    + +L+DILG EDHLGDMDFK+AGT  G+TA+Q+DIK  GI  +I+   L+ A 
Sbjct:   477 -------FVVLSDILGDEDHLGDMDFKVAGTAGGITALQMDIKIEGITQEIMQIALKQAK 529

Query:   590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
               RL IL+ M++ ISAP  +  + +PR+ T+K     +  +IG  GA  R++ EETG  I
Sbjct:   530 AARLHILEVMDKAISAPSEELSQFAPRIYTMKIPQKKIAEVIGKGGATIRQLTEETGTTI 589

Query:   650 SVSD-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
              + D GT+ + A +       + +++ +   E+EVG IY+G V  + ++GAFV    G+ 
Sbjct:   590 EIGDDGTIKIAATDGESAANAISRIEQLTA-ELEVGTIYEGKVVRIVDFGAFVNILPGKD 648

Query:   709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV--SPRPEAD 761
             GL+H+S++S E V+ V+D +S GQ++ ++ +  D +G ++LS+K    S  P AD
Sbjct:   649 GLVHISQISTERVNNVTDHLSEGQEVKVKVLEVDRQGRVRLSIKEAMESAAPAAD 703


>MGI|MGI:1918951 [details] [associations]
            symbol:Pnpt1 "polyribonucleotide nucleotidyltransferase 1"
            species:10090 "Mus musculus" [GO:0000175 "3'-5'-exoribonuclease
            activity" evidence=ISO] [GO:0000957 "mitochondrial RNA catabolic
            process" evidence=ISO] [GO:0000958 "mitochondrial mRNA catabolic
            process" evidence=ISO;IMP] [GO:0000962 "positive regulation of
            mitochondrial RNA catabolic process" evidence=ISO] [GO:0000964
            "mitochondrial RNA 5'-end processing" evidence=ISO] [GO:0000965
            "mitochondrial RNA 3'-end processing" evidence=ISO] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0004518 "nuclease activity"
            evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
            [GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
            evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005739
            "mitochondrion" evidence=ISO;IDA] [GO:0005758 "mitochondrial
            intermembrane space" evidence=ISO;IDA] [GO:0006396 "RNA processing"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0006401 "RNA catabolic process" evidence=ISO] [GO:0006402 "mRNA
            catabolic process" evidence=ISO] [GO:0006810 "transport"
            evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=ISO]
            [GO:0016020 "membrane" evidence=IEA] [GO:0016740 "transferase
            activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
            activity" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
            [GO:0034599 "cellular response to oxidative stress" evidence=ISO]
            [GO:0035198 "miRNA binding" evidence=ISO] [GO:0035458 "cellular
            response to interferon-beta" evidence=ISO] [GO:0035927 "RNA import
            into mitochondrion" evidence=ISO] [GO:0035928 "rRNA import into
            mitochondrion" evidence=ISO] [GO:0043457 "regulation of cellular
            respiration" evidence=IMP] [GO:0043631 "RNA polyadenylation"
            evidence=ISO] [GO:0045025 "mitochondrial degradosome" evidence=ISO]
            [GO:0045926 "negative regulation of growth" evidence=ISO]
            [GO:0051260 "protein homooligomerization" evidence=ISO] [GO:0061014
            "positive regulation of mRNA catabolic process" evidence=ISO]
            [GO:0070207 "protein homotrimerization" evidence=ISO] [GO:0070584
            "mitochondrion morphogenesis" evidence=IMP] [GO:0071042 "nuclear
            polyadenylation-dependent mRNA catabolic process" evidence=ISO]
            [GO:0071850 "mitotic cell cycle arrest" evidence=ISO] [GO:0097222
            "mitochondrial mRNA polyadenylation" evidence=ISO] [GO:2000627
            "positive regulation of miRNA catabolic process" evidence=ISO]
            [GO:2000772 "regulation of cellular senescence" evidence=ISO]
            InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
            InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
            Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
            SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 MGI:MGI:1918951
            Pfam:PF01138 GO:GO:0005886 GO:GO:0008266 GO:GO:0005758
            GO:GO:0034599 GO:GO:0045926 GO:GO:0035198 GO:GO:0070207
            GO:GO:0035458 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0034046 GO:GO:0070584
            GO:GO:0000958 GO:GO:0071850 GO:GO:0000175 GO:GO:0043457
            GO:GO:0071042 InterPro:IPR022967 SMART:SM00316 GO:GO:0045025
            Pfam:PF03725 SUPFAM:SSF55666 GO:GO:0061014 GO:GO:2000772
            eggNOG:COG1185 EMBL:BX000351 HOGENOM:HOG000218327 KO:K00962
            GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 OMA:RDKTLMI CTD:87178 HOVERGEN:HBG053625
            OrthoDB:EOG4T4CTT GO:GO:0097222 GO:GO:0000965 GO:GO:0000964
            GO:GO:2000627 GO:GO:0000962 GO:GO:0035928 EMBL:AJ507387
            EMBL:AF465249 EMBL:AK004563 EMBL:AK149419 EMBL:BC027228
            EMBL:BC049283 EMBL:BC055826 IPI:IPI00321923 IPI:IPI00556889
            RefSeq:NP_082145.1 RefSeq:XP_003689309.1 UniGene:Mm.211131 PDB:1WHU
            PDBsum:1WHU ProteinModelPortal:Q8K1R3 SMR:Q8K1R3 STRING:Q8K1R3
            PhosphoSite:Q8K1R3 PaxDb:Q8K1R3 PRIDE:Q8K1R3
            Ensembl:ENSMUST00000020756 GeneID:71701 KEGG:mmu:71701
            UCSC:uc007igp.1 GeneTree:ENSGT00390000014001 InParanoid:Q8K1R3
            EvolutionaryTrace:Q8K1R3 NextBio:334263 Bgee:Q8K1R3
            Genevestigator:Q8K1R3 GermOnline:ENSMUSG00000020464 Uniprot:Q8K1R3
        Length = 783

 Score = 1245 (443.3 bits), Expect = 8.7e-127, P = 8.7e-127
 Identities = 279/734 (38%), Positives = 424/734 (57%)

Query:    64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
             ++G R + + +GK+ARFA+G  V+   +T V+ T  S    S   F+PL VDY++K  A 
Sbjct:    50 DLGHRKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKASPSQFMPLVVDYRQKAAAA 109

Query:   124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
             G IP  Y+RRE    +RE+L  R+IDR IRPLFPAG++++ QV+ ++L+ DG  +PDI+A
Sbjct:   110 GRIPTNYLRREIGSSDREVLTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEPDILA 169

Query:   184 ANATSAALMLSDXXXXXXXXXXXXXXXXXQFIVNPTMDELSLSDLNLVYA-CTREKTLMI 242
              N  S AL LSD                 + +VNPT  E+S S LNLV A   + + +M+
Sbjct:   170 VNGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTLNLVVAGAPKSQIVML 229

Query:   243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKE-YKLSMISEQTLEKVSN 301
             +  A  I ++D    +++      + ++   +L ++ G  K+   K+   S + ++    
Sbjct:   230 EASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVAKRTPQKIFTPSAEIVKYTKI 289

Query:   302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE-ESLQVLPKAVDTXXXXXX 360
             +A   + AVFTD  + K  R EA++KI  D ++ L+E+  E +  +++ ++ +       
Sbjct:   290 IAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQFEII-ESFNIVAKEVF 348

Query:   361 XXXXXAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
                   E  R DGR L  +R I CE      LHGS+LF RG TQVLCTVT  +   + + 
Sbjct:   349 RSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKS 408

Query:   421 ESLV----GPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
             + ++    G   K FMLHY FPP+  NE GK  G+NRRE+GHG LAEKAL  V+P   DF
Sbjct:   409 DQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPVIP--KDF 466

Query:   477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
             P+T+RV SEV+ S+GS+SMA+ CGGS+ALMDAG+P+   VAGV+VGLV++ +P  GEI+D
Sbjct:   467 PFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNPEKGEIED 526

Query:   537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
             YR+LTDILG+ED+ GDMDFKIAGT  G+TA+Q DIK  G+P+ II E ++ A   + +IL
Sbjct:   527 YRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPIKIIMEAIQQASVAKKEIL 586

Query:   597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS-VSDGT 655
               M + IS PR     N P + T+K       + +GP G   +K++ ETG  IS V + T
Sbjct:   587 QIMNKTISKPRASRKENGPVVETVKVPLSKRAKFVGPGGYHLKKLQAETGVTISQVDEET 646

Query:   656 LTVVAKNRSVMEKVLEKVDFIIG----REIEVGGIYKGVVTSVKEYGAFVEFNGGQQG-L 710
              ++ A   + M +  + +  I      +++E G +Y   +T +++ G  V+        L
Sbjct:   647 FSIFAPTPTAMHEARDFITEICRDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTAVL 706

Query:   711 LHVSELSHEPVSRVSDV-VSVGQQLSLRCIGQD-VRGNIKLSLKAV-SPRPEA-----DV 762
             LH S+L    +   + + + VGQ++ ++  G+D   G ++LS K + SP   A     D 
Sbjct:   707 LHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVLQSPATTALKTLNDR 766

Query:   763 KGVVEGSVPVNKQA 776
               +V G  PV++ +
Sbjct:   767 SSIVMGE-PVSQSS 779


>TIGR_CMR|CBU_0852 [details] [associations]
            symbol:CBU_0852 "polyribonucleotide
            nucleotidyltransferase" species:227377 "Coxiella burnetii RSA 493"
            [GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
            evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
            HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
            InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
            Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
            PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
            InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
            GO:GO:0006396 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0006402
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
            SMART:SM00316 HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666
            eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
            PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
            HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:NP_819872.1
            ProteinModelPortal:Q83D87 SMR:Q83D87 PRIDE:Q83D87 GeneID:1208745
            KEGG:cbu:CBU_0852 PATRIC:17930401
            BioCyc:CBUR227377:GJ7S-847-MONOMER Uniprot:Q83D87
        Length = 696

 Score = 1241 (441.9 bits), Expect = 2.3e-126, P = 2.3e-126
 Identities = 276/706 (39%), Positives = 420/706 (59%)

Query:    56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTV 114
             +   ++ F+ G   +T ETG++AR A GAVV+ M +T +L +V + K  +  RDF PLTV
Sbjct:     1 MNKIRKTFQYGKHEVTFETGEMARQATGAVVVRMGDTVLLVSVVAKKEAEEGRDFFPLTV 60

Query:   115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
             +YQEK +A G IP  Y +REG P E+E L  R+IDRP+RPLFP GF +EVQV+A+VLS D
Sbjct:    61 NYQEKTYAAGKIPGGYFKREGRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIATVLSVD 120

Query:   175 GKQDPDIMAANATSAALMLSDXXXXXXXXXXXXXXXXXQFIVNPTMDELSLSDLNLVYAC 234
              K   DI A    SAA+ LS                  ++++NP++DEL  S L+LV A 
Sbjct:   121 SKVPTDIPAILGASAAIGLSGIPFNGSLGAARVGYRGGEYLLNPSLDELKDSALDLVVAG 180

Query:   235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
             TR+  LM++ +A+E+ E  +   +   H      ++      ++AG  K E++   ++  
Sbjct:   181 TRDAVLMVESEAQELPESVMLGAVLHGHQAMQVAIQAIAEFIQEAGGAKWEWEPPTVNT- 239

Query:   295 TLEK-VSNLAEAHIEAVFT-DPSYSKFERGEAL-DKIGQDVKKALEEECDEESLQVLPKA 351
              LEK V   +EA ++  +      ++  + +A+ D++  D  +A E E +E ++     A
Sbjct:   240 ALEKWVVEKSEAPLKKAYQIQEKTARQAQIQAIRDQLLAD--RAAEREGEENAVNEHELA 297

Query:   352 V--DTXXXXXXXXXXXAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTV 409
             V                   R+DGR    VRPI  + G LP  HGS+LF+RG+TQ L   
Sbjct:   298 VIFHELERRIVREQILTGQPRIDGRDTKTVRPITVKVGVLPRSHGSALFTRGETQALVVT 357

Query:   410 TLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAV 469
             TLG   +AQ ++ L G   + F+ HY+FPPFC+ EVG   G  RRE+GHG LA++A++ V
Sbjct:   358 TLGTERDAQSIDDLDGDRQEEFIFHYNFPPFCVGEVGFMSGPKRREIGHGRLAKRAVVPV 417

Query:   470 LPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDP 529
             +P  + FPY +RV SE++ S+GS+SMA+VCG S+ALMDAG+P +  VAG+++GL+ E D 
Sbjct:   418 VPTLDKFPYVIRVVSEILESNGSSSMASVCGSSLALMDAGVPTKAPVAGIAMGLIKENDK 477

Query:   530 STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
                    Y +L+DILG EDHLGDMDFK+AGT  GVTA+Q+DIK  GI  +I+ + L+ A 
Sbjct:   478 -------YAVLSDILGDEDHLGDMDFKVAGTSNGVTALQMDIKIEGITKEIMEQALDQAK 530

Query:   590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
             +GRL IL  M + +  PR+Q    +P+  T+K + + +R +IG  G + R+I E T   I
Sbjct:   531 EGRLHILSIMNKVLDKPRSQVSDLAPQYVTMKINPEKIRDVIGKGGVVIREITEATNCAI 590

Query:   650 SVSD-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
              +SD GT+ + A      E    +++ +   E+E+G +Y+G V  + ++GAFV+     Q
Sbjct:   591 DISDDGTIKIAAHTTEEGEAAKRRIEELTA-EVELGKVYEGTVVKITDFGAFVQILPNTQ 649

Query:   709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
             GL+H+S+++ E V  V D +  GQ + ++ I  D +G ++LS+K +
Sbjct:   650 GLVHISQIAQERVENVRDYLEEGQVIRVKVIEIDRQGRVRLSMKQI 695


>TIGR_CMR|SPO_3389 [details] [associations]
            symbol:SPO_3389 "polyribonucleotide
            nucleotidyltransferase" species:246200 "Ruegeria pomeroyi DSS-3"
            [GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS]
            [GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
            evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
            HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
            InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
            Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
            PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
            InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 EMBL:CP000031
            GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0006396 GO:GO:0006402
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
            SMART:SM00316 HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666
            eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
            PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
            HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:YP_168585.1
            ProteinModelPortal:Q5LN23 GeneID:3195958 KEGG:sil:SPO3389
            PATRIC:23380231 Uniprot:Q5LN23
        Length = 714

 Score = 1236 (440.2 bits), Expect = 7.8e-126, P = 7.8e-126
 Identities = 284/722 (39%), Positives = 426/722 (59%)

Query:    66 GSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQFAQG 124
             G   +TLE+GKIAR A+G+VV  + ET+V++ VT ++     +DF PLTV YQEK +A G
Sbjct:    12 GEETLTLESGKIARQADGSVVATLGETRVMANVTFAREQKPGQDFFPLTVHYQEKYYAAG 71

Query:   125 VIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAA 184
              +P  + +RE  P E+E L  R+IDRPIRPLF  GF +EV VM +VLS D   DPDI+A 
Sbjct:    72 KVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDIVAM 131

Query:   185 NATSAALMLSDXXXXXXXXXXXXXXXXXQFIVNPTMDE---LSLSD---LNLVYACTREK 238
              A SAAL +S                  ++++NPT+D+   L L+    L+LV A T++ 
Sbjct:   132 IAASAALTISGVPFMGPIAGCRVGYVDGEYVLNPTVDDMQDLRLNPEQRLDLVVAGTKDA 191

Query:   239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
              +M++ +A E++E ++   +  AH +    ++  +  AE+  K+  ++     S+     
Sbjct:   192 VMMVESEAYELTEAEMLGAVTFAHAQIQPVVDLIVSFAEQCAKEPFDFTPPDYSD-LYAA 250

Query:   299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTXXXX 358
             V    E  + A F      K ER  A+    + +K AL EE   +    L  A+      
Sbjct:   251 VKAAGEEQMRAAFAITD--KQERTAAVAAAREAIKAALTEEQLADGN--LGSALKKLEAG 306

Query:   359 XXXXXXXAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
                      G R+DGR    VRPI  E+G LP  HGS+LF+RG+TQ L   TLG   + Q
Sbjct:   307 ILRGDVVKGGKRIDGRDTTTVRPIVAETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQ 366

Query:   419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGL-NRREVGHGTLAEKALLAVLPPENDFP 477
              +++L G     F+LHY+FPP+ + EVG RVG   RRE+GHG LA +AL AVLP   DFP
Sbjct:   367 FIDALHGNFKSNFLLHYNFPPYSVGEVG-RVGSPGRREIGHGKLAWRALQAVLPAPTDFP 425

Query:   478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
             YT+RV SE+  S+GS+SMA+VCGGS+++MDAG+PL+  VAGV++GL+ E D S      Y
Sbjct:   426 YTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLILEDDGS------Y 479

Query:   538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
              +LTDILG EDHLGDMDFK+AGT  G+T++Q+DIK AGI  +I+ + L  A  GR+ IL 
Sbjct:   480 AVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKALSQAKDGRMHILA 539

Query:   598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTL 656
              M + +S        ++PR+ T++   D +R +IG  G + R+I E +G ++ ++D G +
Sbjct:   540 EMNKALSGA-ADFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGII 598

Query:   657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
              + + N   ++K  + +  I+  E E G +Y G V  + ++GAFV F G + GL+HVS++
Sbjct:   599 KIASPNGDSIKKAYDMIWSIVA-EPEEGQVYTGKVVKIVDFGAFVNFFGKRDGLVHVSQI 657

Query:   717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVPVNKQA 776
              +  ++  SDV+  GQ++ ++ +G D RG ++LS+K V      ++       VP  K+A
Sbjct:   658 ENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEI-------VPEKKEA 710

Query:   777 TD 778
             ++
Sbjct:   711 SE 712


>TIGR_CMR|DET_0970 [details] [associations]
            symbol:DET_0970 "polyribonucleotide
            nucleotidyltransferase" species:243164 "Dehalococcoides ethenogenes
            195" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
            "polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
            [GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
            InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
            InterPro:IPR009019 InterPro:IPR012162 InterPro:IPR015848
            Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
            PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
            InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
            GO:GO:0006396 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0006402
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
            SMART:SM00316 SUPFAM:SSF54814 Pfam:PF03725 SUPFAM:SSF55666
            HSSP:Q91WJ8 eggNOG:COG1185 KO:K00962 GO:GO:0004654
            Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
            ProtClustDB:PRK11824 RefSeq:YP_181693.1 ProteinModelPortal:Q3Z7V6
            SMR:Q3Z7V6 STRING:Q3Z7V6 GeneID:3229678 KEGG:det:DET0970
            PATRIC:21608989 BioCyc:DETH243164:GJNF-971-MONOMER Uniprot:Q3Z7V6
        Length = 720

 Score = 1218 (433.8 bits), Expect = 9.1e-126, Sum P(2) = 9.1e-126
 Identities = 259/697 (37%), Positives = 416/697 (59%)

Query:    62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG--DSVRDFLPLTVDYQEK 119
             E  IG R +T+E+GK+AR A+ AV +   +T++L T+ ++K   + V DFLPLT+DY+E+
Sbjct:     8 ERTIGGRKLTIESGKMARLADAAVTIRYADTELLVTLCAAKKPREGV-DFLPLTIDYEER 66

Query:   120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
              +A G IP  ++RREG P E+ +L GR+ DRP+RPL P  + +E+Q++ +V++SD + D 
Sbjct:    67 MYAAGKIPGGFIRREGRPSEQAILAGRLTDRPLRPLLPKEWRNELQIIITVIASDKENDA 126

Query:   180 DIMAANATSAALMLSDXXXXXXXXXXXXXXXXXQFIVNPTMDELSLSDLNLVYACTREKT 239
             DI      S  L +S                  +F++NPT  +L  S ++LV   TR+  
Sbjct:   127 DIWGVVGASTVLTMSQIPYEGPVGASRVGYTNGEFVLNPTFAQLEQSQMDLVVVSTRKAV 186

Query:   240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
             +MI+  ++EI E  +   +  AH    + ++ Q  +  K GK+K    +  I E+    V
Sbjct:   187 VMIEAGSKEIPEDLMIKAIEFAHQANQELIDLQDEIRAKLGKEKLPVPVLEIPEEVKAAV 246

Query:   300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTXXXXX 359
             +   +  +    +     K  R  A++ +  ++ +AL E   E  +     A D      
Sbjct:   247 AAFVKGRVNEALSHQD--KTLRENAVEALQSELVEALAETYAEGDILA---AYDKEIKKA 301

Query:   360 XXXXXXAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
                    + +RV+GR + ++R +  E+G LP +HGS+LF+RGDTQV+   TLG+  EAQ+
Sbjct:   302 IRSTILEKDIRVNGRGIKQLRQLDAETGILPRVHGSALFTRGDTQVMAITTLGSLQEAQQ 361

Query:   420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGL-NRREVGHGTLAEKALLAVLPPENDFPY 478
             L+ L    TKRFMLHY+F PF   EV KR G   RRE+GHG LAE+AL+ VLP   +FPY
Sbjct:   362 LDGLSAEDTKRFMLHYNFAPFSTGEV-KRSGSPGRREIGHGALAERALVPVLPTPEEFPY 420

Query:   479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
             T+R+ ++V+ S GSTSM +VC  S++LMDAG+P+++ VAG+S+GL+      TGE   Y 
Sbjct:   421 TIRMVADVVGSSGSTSMGSVCSSSLSLMDAGVPVKKAVAGISIGLI------TGENDTYC 474

Query:   539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
              +TDI G+ED+ GDMDFK+AGTR G+TAIQ+D+K  GI  D+I + +  A + R  IL+ 
Sbjct:   475 TITDIEGIEDNYGDMDFKVAGTRDGITAIQVDMKVKGISFDVIRDAIYQAKEARYTILEV 534

Query:   599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLT 657
             M++ ++ P+T+    +PR+  +  D   +  +IG  G   R I E+T   + + +DGT+ 
Sbjct:   535 MDKALAQPKTELSPYAPRMYKISIDPSKIGSVIGSGGKTIRSIIEQTNTTVDIENDGTVV 594

Query:   658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
             + A + +  +K ++ ++ +  +++E G +Y G VT +  +GAFVE   G++G++H+SEL+
Sbjct:   595 IGATDEASAQKAIKIIEDLT-KDVEAGSVYTGKVTRIMTFGAFVEILPGKEGMVHISELA 653

Query:   718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
                V +V DVV VG +++++    D +G I LS + +
Sbjct:   654 DHRVEKVEDVVKVGDEITVKVTEIDSQGRINLSRRVI 690

 Score = 38 (18.4 bits), Expect = 9.1e-126, Sum P(2) = 9.1e-126
 Identities = 8/30 (26%), Positives = 18/30 (60%)

Query:   898 RVEAIVSAKNLKLGTKVAAKVYQVRARGLV 927
             RVE +     +K+G ++  KV ++ ++G +
Sbjct:   656 RVEKVEDV--VKVGDEITVKVTEIDSQGRI 683


>UNIPROTKB|Q9KU76 [details] [associations]
            symbol:pnp "Polyribonucleotide nucleotidyltransferase"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
            evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
            HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
            InterPro:IPR004088 InterPro:IPR009019 InterPro:IPR012162
            InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
            PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
            InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
            EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
            GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
            InterPro:IPR022967 SMART:SM00316 HSSP:P05055 SUPFAM:SSF54814
            Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962 GO:GO:0004654
            Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 PIR:E82298
            RefSeq:NP_230296.1 ProteinModelPortal:Q9KU76 SMR:Q9KU76
            PRIDE:Q9KU76 DNASU:2615437 GeneID:2615437 KEGG:vch:VC0647
            PATRIC:20080407 Uniprot:Q9KU76
        Length = 709

 Score = 1231 (438.4 bits), Expect = 2.6e-125, P = 2.6e-125
 Identities = 271/693 (39%), Positives = 412/693 (59%)

Query:    63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQF 121
             F+ G+  +TLETG +AR A  AV+  MD+T V  +V   K   V +DF PLTV+YQE+ +
Sbjct:    10 FQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLTVNYQERTY 69

Query:   122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
             A G IP  + +REG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S +    PDI
Sbjct:    70 AAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDI 129

Query:   182 MAANATSAALMLSDXXXXXXXXXXXXXXXXXQFIVNPTMDELSLSDLNLVYACTREKTLM 241
             ++   TSAAL +S                  Q ++NP+  EL  S L+LV A T    LM
Sbjct:   130 ISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVVAGTDNAVLM 189

Query:   242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
             ++ +A+ ++E+++ A +   H +    ++     A +      E+     + +   KV+ 
Sbjct:   190 VESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAENTELKAKVAA 249

Query:   302 LAEAH-IEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTXXXXXX 360
             LAE   +EA       ++++R   + +I  +V  AL  E +    + +            
Sbjct:   250 LAETRLVEAYQITEKMARYDR---IHEISAEVTAALLAENEALDTKEIHTIFHDLEKTVV 306

Query:   361 XXXXXAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
                  A   R+DGR+ D VR +   +G LP  HGS+LF+RG+TQ L T TLG   +AQ +
Sbjct:   307 RRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQII 366

Query:   421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
             + L G     F+LHY+FPP+C+ E G      RRE+GHG LA++ + AV+P   +FPYTV
Sbjct:   367 DELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPEEFPYTV 426

Query:   481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
             RV SE+  S+GS+SMA+VCG S+ALMDAG+P++  VAG+++GLV E +       D+ +L
Sbjct:   427 RVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEN-------DFVVL 479

Query:   541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
             +DILG EDHLGDMDFK+AGT  GVTA+Q+DIK  GI  +I+   L  A   RL IL  M+
Sbjct:   480 SDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539

Query:   601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTVV 659
             + ISA R+     +PR+ T+K   + ++ +IG  GA+ R++ EETG  I + D GT+ + 
Sbjct:   540 QAISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599

Query:   660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
             A +    ++ + ++  I   E+EVG IY G V  + ++GAFV    G+ GL+H+S+++ +
Sbjct:   600 ATDGDQAKEAIRRIQEITA-EVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADK 658

Query:   720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
              V +VSD ++ GQ++ ++ +  D +G ++LS+K
Sbjct:   659 RVEKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691


>TIGR_CMR|VC_0647 [details] [associations]
            symbol:VC_0647 "polyribonucleotide nucleotidyltransferase"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004654
            "polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
            [GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_01595
            InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
            InterPro:IPR009019 InterPro:IPR012162 InterPro:IPR015848
            Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
            PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
            InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 EMBL:AE003852
            GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401 GO:GO:0006396
            GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
            SMART:SM00316 HSSP:P05055 SUPFAM:SSF54814 Pfam:PF03725
            SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962 GO:GO:0004654
            Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 PIR:E82298
            RefSeq:NP_230296.1 ProteinModelPortal:Q9KU76 SMR:Q9KU76
            PRIDE:Q9KU76 DNASU:2615437 GeneID:2615437 KEGG:vch:VC0647
            PATRIC:20080407 Uniprot:Q9KU76
        Length = 709

 Score = 1231 (438.4 bits), Expect = 2.6e-125, P = 2.6e-125
 Identities = 271/693 (39%), Positives = 412/693 (59%)

Query:    63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQF 121
             F+ G+  +TLETG +AR A  AV+  MD+T V  +V   K   V +DF PLTV+YQE+ +
Sbjct:    10 FQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLTVNYQERTY 69

Query:   122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
             A G IP  + +REG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S +    PDI
Sbjct:    70 AAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDI 129

Query:   182 MAANATSAALMLSDXXXXXXXXXXXXXXXXXQFIVNPTMDELSLSDLNLVYACTREKTLM 241
             ++   TSAAL +S                  Q ++NP+  EL  S L+LV A T    LM
Sbjct:   130 ISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVVAGTDNAVLM 189

Query:   242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
             ++ +A+ ++E+++ A +   H +    ++     A +      E+     + +   KV+ 
Sbjct:   190 VESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAENTELKAKVAA 249

Query:   302 LAEAH-IEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTXXXXXX 360
             LAE   +EA       ++++R   + +I  +V  AL  E +    + +            
Sbjct:   250 LAETRLVEAYQITEKMARYDR---IHEISAEVTAALLAENEALDTKEIHTIFHDLEKTVV 306

Query:   361 XXXXXAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
                  A   R+DGR+ D VR +   +G LP  HGS+LF+RG+TQ L T TLG   +AQ +
Sbjct:   307 RRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQII 366

Query:   421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
             + L G     F+LHY+FPP+C+ E G      RRE+GHG LA++ + AV+P   +FPYTV
Sbjct:   367 DELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPEEFPYTV 426

Query:   481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
             RV SE+  S+GS+SMA+VCG S+ALMDAG+P++  VAG+++GLV E +       D+ +L
Sbjct:   427 RVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEN-------DFVVL 479

Query:   541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
             +DILG EDHLGDMDFK+AGT  GVTA+Q+DIK  GI  +I+   L  A   RL IL  M+
Sbjct:   480 SDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539

Query:   601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTVV 659
             + ISA R+     +PR+ T+K   + ++ +IG  GA+ R++ EETG  I + D GT+ + 
Sbjct:   540 QAISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599

Query:   660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
             A +    ++ + ++  I   E+EVG IY G V  + ++GAFV    G+ GL+H+S+++ +
Sbjct:   600 ATDGDQAKEAIRRIQEITA-EVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADK 658

Query:   720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
              V +VSD ++ GQ++ ++ +  D +G ++LS+K
Sbjct:   659 RVEKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691


>UNIPROTKB|Q2GJV5 [details] [associations]
            symbol:pnp "Polyribonucleotide nucleotidyltransferase"
            species:212042 "Anaplasma phagocytophilum HZ" [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0004654 "polyribonucleotide
            nucleotidyltransferase activity" evidence=ISS] [GO:0006402 "mRNA
            catabolic process" evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
            InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
            PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
            InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003729
            GO:GO:0006396 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0006402
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
            SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
            GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 OMA:YTMRVVS RefSeq:YP_505346.1
            ProteinModelPortal:Q2GJV5 STRING:Q2GJV5 GeneID:3930955
            KEGG:aph:APH_0767 PATRIC:20950226 HOGENOM:HOG000218326
            ProtClustDB:PRK11824 BioCyc:APHA212042:GHPM-783-MONOMER
            Uniprot:Q2GJV5
        Length = 838

 Score = 1195 (425.7 bits), Expect = 1.7e-121, P = 1.7e-121
 Identities = 281/736 (38%), Positives = 421/736 (57%)

Query:    64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
             E G R +T+E+GKIAR A GAVV+    T VL+TV S K     DFLPLTV +  K +A 
Sbjct:    10 EWGDRSLTIESGKIARQAGGAVVVDYGGTSVLATVVSQKSKEAVDFLPLTVQFLAKSYAV 69

Query:   124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
             G IP  + +REG P +RE L+ RIIDR IRPLFP+GF  EV V+ ++LS D    P+ +A
Sbjct:    70 GKIPGGFFKREGKPSDRETLISRIIDRSIRPLFPSGFSDEVAVVCNLLSYDASSPPETVA 129

Query:   184 ANATSAALMLSDXXXX--XXXXXXXXXXXXXQFIVNPTMDELSLSDLNLVYACTREKTLM 241
                 SAAL +S                    ++I+NP+ DELS+S L++ YA T    LM
Sbjct:   130 LIGASAALAISGIPFHCPVAGARIGYIRGEGRYILNPSADELSVSALDMFYARTDTSILM 189

Query:   242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGK-QKKEYKLSMISEQTLEKV- 299
             ++ +A E++E ++   L+  H    + ++     AE+A K    E+    +S   ++ + 
Sbjct:   190 VESEAHELTEAEMLGALQFGHEHCEEIIKVIGEFAEEARKCAPAEFVPCDLST-IIDSIG 248

Query:   300 SNLAEAHIEAVFTDPSYSKFERGEALD-KIGQDVK-KALEE-ECDEESL-QVLPKAVDTX 355
             S+  E  + A       ++  + +A+   + +D++ K L E E   + + Q +  A+ T 
Sbjct:   249 SDYKERFLVAYSEKEKKARVAKLDAVRASLTEDLRVKFLSESEGGSKYIAQDIVYAMKTF 308

Query:   356 XXXXXXXXXXAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
                           R+DGR  D++R I  E   +   HGS+LF+RGDTQ L    LG P 
Sbjct:   309 ERSLVRERVLESKSRIDGRAYDQIRNIEIEVDLISKAHGSALFTRGDTQALVITALGTPQ 368

Query:   416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
             + Q ++   G   +RF+LHY+FPP+ + E        RRE+GHG LA +A+  VLP + D
Sbjct:   369 DEQIVDGFDGDKRERFLLHYNFPPYAVGEASALRPPGRREIGHGKLAWRAIHPVLPSKAD 428

Query:   476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
             FPYT+RV SE+  SDGS+SMATVCG S+ALMD G+PL+  VAG+++GL+ E D       
Sbjct:   429 FPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDR------ 482

Query:   536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
              Y IL+DILG ED+LGDMDFK+AGTR G+TA+Q+D+K  GI   ++   L+ A +GR  I
Sbjct:   483 -YAILSDILGDEDYLGDMDFKVAGTREGITALQMDMKVKGIDFAVLGTALDQAKEGRFFI 541

Query:   596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DG 654
             ++ M+R I   R     + PR+ ++  D   ++ +IG  G   R+I E+TG +I +S DG
Sbjct:   542 IEKMDRVIKESRGAVREHVPRMESMLIDKGKIKNVIGAGGKNVREICEKTGAKIEISQDG 601

Query:   655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
             T+ + A  R  +E   + +  I+  E EVG IY G V  + +YGAFV F G ++GL+H+S
Sbjct:   602 TVMIYAVGREAIESAKDMITGIVS-EPEVGKIYSGEVCELAKYGAFVTFLGARKGLVHIS 660

Query:   715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVPVNK 774
             E+ +E ++ V+DV++VG ++ +  I  D + +I+LS++ +       V    E   P  +
Sbjct:   661 EIRNEHINAVADVLAVGDKVKVLVIDMD-KDHIQLSMRRIDQETGDQVD--CELYAPQRR 717

Query:   775 QATDVWASVGDVS-NG 789
                    +VGD S NG
Sbjct:   718 NGVAAGNTVGDSSVNG 733


>TIGR_CMR|APH_0767 [details] [associations]
            symbol:APH_0767 "polyribonucleotide
            nucleotidyltransferase" species:212042 "Anaplasma phagocytophilum
            HZ" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
            "polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
            [GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
            InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
            InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
            Pfam:PF03726 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
            InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
            GO:GO:0003729 GO:GO:0006396 EMBL:CP000235 GenomeReviews:CP000235_GR
            GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
            SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
            GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 OMA:YTMRVVS RefSeq:YP_505346.1
            ProteinModelPortal:Q2GJV5 STRING:Q2GJV5 GeneID:3930955
            KEGG:aph:APH_0767 PATRIC:20950226 HOGENOM:HOG000218326
            ProtClustDB:PRK11824 BioCyc:APHA212042:GHPM-783-MONOMER
            Uniprot:Q2GJV5
        Length = 838

 Score = 1195 (425.7 bits), Expect = 1.7e-121, P = 1.7e-121
 Identities = 281/736 (38%), Positives = 421/736 (57%)

Query:    64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
             E G R +T+E+GKIAR A GAVV+    T VL+TV S K     DFLPLTV +  K +A 
Sbjct:    10 EWGDRSLTIESGKIARQAGGAVVVDYGGTSVLATVVSQKSKEAVDFLPLTVQFLAKSYAV 69

Query:   124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
             G IP  + +REG P +RE L+ RIIDR IRPLFP+GF  EV V+ ++LS D    P+ +A
Sbjct:    70 GKIPGGFFKREGKPSDRETLISRIIDRSIRPLFPSGFSDEVAVVCNLLSYDASSPPETVA 129

Query:   184 ANATSAALMLSDXXXX--XXXXXXXXXXXXXQFIVNPTMDELSLSDLNLVYACTREKTLM 241
                 SAAL +S                    ++I+NP+ DELS+S L++ YA T    LM
Sbjct:   130 LIGASAALAISGIPFHCPVAGARIGYIRGEGRYILNPSADELSVSALDMFYARTDTSILM 189

Query:   242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGK-QKKEYKLSMISEQTLEKV- 299
             ++ +A E++E ++   L+  H    + ++     AE+A K    E+    +S   ++ + 
Sbjct:   190 VESEAHELTEAEMLGALQFGHEHCEEIIKVIGEFAEEARKCAPAEFVPCDLST-IIDSIG 248

Query:   300 SNLAEAHIEAVFTDPSYSKFERGEALD-KIGQDVK-KALEE-ECDEESL-QVLPKAVDTX 355
             S+  E  + A       ++  + +A+   + +D++ K L E E   + + Q +  A+ T 
Sbjct:   249 SDYKERFLVAYSEKEKKARVAKLDAVRASLTEDLRVKFLSESEGGSKYIAQDIVYAMKTF 308

Query:   356 XXXXXXXXXXAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
                           R+DGR  D++R I  E   +   HGS+LF+RGDTQ L    LG P 
Sbjct:   309 ERSLVRERVLESKSRIDGRAYDQIRNIEIEVDLISKAHGSALFTRGDTQALVITALGTPQ 368

Query:   416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
             + Q ++   G   +RF+LHY+FPP+ + E        RRE+GHG LA +A+  VLP + D
Sbjct:   369 DEQIVDGFDGDKRERFLLHYNFPPYAVGEASALRPPGRREIGHGKLAWRAIHPVLPSKAD 428

Query:   476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
             FPYT+RV SE+  SDGS+SMATVCG S+ALMD G+PL+  VAG+++GL+ E D       
Sbjct:   429 FPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDR------ 482

Query:   536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
              Y IL+DILG ED+LGDMDFK+AGTR G+TA+Q+D+K  GI   ++   L+ A +GR  I
Sbjct:   483 -YAILSDILGDEDYLGDMDFKVAGTREGITALQMDMKVKGIDFAVLGTALDQAKEGRFFI 541

Query:   596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DG 654
             ++ M+R I   R     + PR+ ++  D   ++ +IG  G   R+I E+TG +I +S DG
Sbjct:   542 IEKMDRVIKESRGAVREHVPRMESMLIDKGKIKNVIGAGGKNVREICEKTGAKIEISQDG 601

Query:   655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
             T+ + A  R  +E   + +  I+  E EVG IY G V  + +YGAFV F G ++GL+H+S
Sbjct:   602 TVMIYAVGREAIESAKDMITGIVS-EPEVGKIYSGEVCELAKYGAFVTFLGARKGLVHIS 660

Query:   715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVPVNK 774
             E+ +E ++ V+DV++VG ++ +  I  D + +I+LS++ +       V    E   P  +
Sbjct:   661 EIRNEHINAVADVLAVGDKVKVLVIDMD-KDHIQLSMRRIDQETGDQVD--CELYAPQRR 717

Query:   775 QATDVWASVGDVS-NG 789
                    +VGD S NG
Sbjct:   718 NGVAAGNTVGDSSVNG 733


>TIGR_CMR|ECH_0726 [details] [associations]
            symbol:ECH_0726 "polyribonucleotide
            nucleotidyltransferase" species:205920 "Ehrlichia chaffeensis str.
            Arkansas" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
            "polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
            [GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
            InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
            InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
            Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
            SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
            GO:GO:0005737 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003723
            GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
            InterPro:IPR022967 SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666
            eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
            PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
            HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:YP_507529.1
            ProteinModelPortal:Q2GGA4 STRING:Q2GGA4 GeneID:3927271
            KEGG:ech:ECH_0726 PATRIC:20576896
            BioCyc:ECHA205920:GJNR-729-MONOMER Uniprot:Q2GGA4
        Length = 796

 Score = 1181 (420.8 bits), Expect = 5.2e-120, P = 5.2e-120
 Identities = 276/760 (36%), Positives = 424/760 (55%)

Query:    64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
             E G + + LE+GKIAR A+GAV++    T VL+TV + K     DFLPLTV +  K +A 
Sbjct:    10 EWGGKTLVLESGKIARQASGAVMVSYAGTTVLATVVTGKTKEPVDFLPLTVQFVAKSYAV 69

Query:   124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
             G IP  +++REG P +RE L+ R+IDR IRPLFPAGFY E+ ++ ++LS D    P++ A
Sbjct:    70 GKIPGGFLKREGKPSDRETLISRLIDRSIRPLFPAGFYDEISIVCNLLSYDTVTPPEVTA 129

Query:   184 ANATSAALMLSDXXXXXXXXXXXXXXXXXQ--FIVNPTMDELSLSDLNLVYACTREKTLM 241
                 +AAL +S                  +  +++N + DE+  S L+L  +   +  LM
Sbjct:   130 LVGATAALSISGVPFNGLVVGARVGYLPSEGKYLLNASADEMLCSSLDLFLSGNEDSVLM 189

Query:   242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
             ++ +A E+SE  +   +   H    ++ +  I L ++   +  +  +  I       VS+
Sbjct:   190 VESEASELSESQMLGAITFGH----QHCQEVINLIKEFSHESGQTPIDFIPHDISSLVSD 245

Query:   302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESL-------QVLPKAVDT 354
             +  ++ E  F+  +YS   + E + K+ +   K L E  D+ S        Q +  A+ T
Sbjct:   246 IESSYKED-FS-LAYSNTIKKERVLKLEELRGKVLSEVADKYSAGDVECSDQDIVTALKT 303

Query:   355 XXXXXXXXXXXAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAP 414
                            R+DGR  DE+R I  E   LP  HGS+LF+RG+TQ L    LG P
Sbjct:   304 FERSLVRSKIIDTSSRIDGRAFDEIRDIEIEVDVLPKAHGSALFTRGNTQALVVTALGTP 363

Query:   415 AEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEN 474
              + Q ++ L G   + F+LHY+FPP+ + E        RRE+GHG LA +A+  VLP ++
Sbjct:   364 QDEQIVDDLDGDRRENFLLHYNFPPYAVGESAALRAPGRREIGHGKLAWRAIRYVLPEKS 423

Query:   475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534
             DFPYT+RV SE+  SDGS+SMATVCG S+ALMD G+P++  VAG+++GL+ E D      
Sbjct:   424 DFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPIKSPVAGIAMGLIKEDDR----- 478

Query:   535 KDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQ 594
               + IL+DILG EDHLGDMDFK+AGT  GVTA+Q+D+K +GI +DII + L  A  GR+ 
Sbjct:   479 --FIILSDILGDEDHLGDMDFKVAGTAEGVTALQMDMKISGIDIDIIEKALLQAKDGRMH 536

Query:   595 ILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SD 653
             IL  M   I   R +   ++PR+ ++  + D +R +IG  G   R I E+TG +I +  D
Sbjct:   537 ILSKMNAVIQESRNRIKNHAPRIESIFINKDKIRNVIGSGGKNIRDICEKTGAKIEIIQD 596

Query:   654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
             GT+ + A N   +E     +  I+  E E+G +++G V  + ++GAFV F GG++GL+H+
Sbjct:   597 GTVMIYAVNNEAVEYAKSMIMDIV-TEPEIGKVFEGTVVEIMKFGAFVSFLGGKKGLVHI 655

Query:   714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVPVN 773
             SE+ +E +S V  V+S+  ++ +  IG D R +I+LS++ V       + G +  ++  N
Sbjct:   656 SEIRNEHISSVGSVISLNDKVKVLVIGID-REHIQLSMRRVDQESGEPIDGELY-NIRKN 713

Query:   774 KQATDVWASVGDVS--NGQNPELPMRKNETPGVNSSTSST 811
               + D   S G  S     NP      +E      S+ S+
Sbjct:   714 SFSDDSCGSTGGSSFKESYNPNSRHGSHEKKRSGGSSRSS 753


>FB|FBgn0039846 [details] [associations]
            symbol:CG11337 species:7227 "Drosophila melanogaster"
            [GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
            evidence=ISS] [GO:0000175 "3'-5'-exoribonuclease activity"
            evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0006402 "mRNA catabolic process" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR003029 InterPro:IPR004087
            InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
            Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
            SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
            GO:GO:0003723 GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
            SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
            Pfam:PF03725 SUPFAM:SSF55666 GO:GO:0004654 Gene3D:1.10.10.400
            PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591
            FlyBase:FBgn0039846 EMBL:BT015961 ProteinModelPortal:Q5U1D1
            SMR:Q5U1D1 STRING:Q5U1D1 PRIDE:Q5U1D1 InParanoid:Q5U1D1
            ArrayExpress:Q5U1D1 Bgee:Q5U1D1 Uniprot:Q5U1D1
        Length = 771

 Score = 1161 (413.8 bits), Expect = 6.9e-118, P = 6.9e-118
 Identities = 265/706 (37%), Positives = 409/706 (57%)

Query:    68 RLITLETGKIARFANGAVVLGMDETKVLST-VTSSKGDSVRDFLPLTVDYQEKQFAQGVI 126
             R +T  +G++ARFANG  V  M +T V+ T V  +K +  + F+PL VDY+ K  A G I
Sbjct:    50 RNMTFSSGRLARFANGTAVCQMGDTAVMVTAVAKAKPNPGQGFMPLVVDYRLKNAASGRI 109

Query:   127 PNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANA 186
             P  +MRRE  P E+E+L  R+IDR +RPLF   +  E Q++ ++L+ D    PD++A NA
Sbjct:   110 PMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAVHSPDVLAINA 169

Query:   187 TSAALMLSDXXXXXXXXXXXXXXXXXQFIVNPTMDELSLSDLNLVYACTREK-TLMIDVQ 245
              S AL LSD                 + ++NPT  EL  S L+LV + T++   +M++ +
Sbjct:   170 ASMALSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQLDLVVSATKQNLVVMLEGK 229

Query:   246 AREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKA-GKQKKEYKLSMISEQTLEK-VSNLA 303
                + ++DL   ++    EA +++  +I   +KA G+QK+E +++   +  L K V ++ 
Sbjct:   230 GNVVLQQDLLKAIKQGTREA-QFIIHEIERLQKAYGRQKREVEVAAEVDPELGKAVRSMC 288

Query:   304 EAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTXXXXXXXXX 363
             E  +  +F D ++ K  R  A++++  +V   +     +    ++ +  +          
Sbjct:   289 EMRLREIFQDSTHDKMSRDNAVNEVRSNVIDKVWSSFPDTEPSLITEQFNQTSRTIFREL 348

Query:   364 XXAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESL 423
                 G+R DGR  D++R I C+      LHGS+LF RG TQV CTV+L +   A +L+SL
Sbjct:   349 IFERGLRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSL 408

Query:   424 V-----GPPTKRFMLHYSFPPFCINEVGKRVG-LNRREVGHGTLAEKALLAVLPPENDFP 477
                   G   K FMLHY FPP+   EVG R+G + RRE+GHG LAE++LL  LP  ND+P
Sbjct:   409 AALDSGGLKAKNFMLHYEFPPYATGEVG-RIGPVGRREMGHGALAERSLLPTLP--NDYP 465

Query:   478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD-PSTGEIKD 536
             +TVR+ SEV+ S+GS+SMA+VCGGS+ALMDAG+P+    AGV++GLV++ +   T  ++D
Sbjct:   466 FTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKFENDDTKHLQD 525

Query:   537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
             YRILTDILG+ED++GDMD K+AGTR G TAIQ D+K  GIPL ++ E L+ A   +  IL
Sbjct:   526 YRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMESLQKATDAKSNIL 585

Query:   597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSDGT- 655
             D M   I  PR     + P   TL  +     +LIGP G   ++I  ETG  ++  D T 
Sbjct:   586 DIMSEAIREPRKYPKESWPVSETLTVEPQQRAQLIGPSGLHMKRIYLETGTSLTAVDETH 645

Query:   656 LTVVAKNRSVMEKVLEKVDFIIGRE----IEVGGIYKGVVTSVKEYGAFVE-FNGGQQGL 710
               V A +++ M++  E ++  + +E    +E GGIY   +T +++ G  V  +      L
Sbjct:   646 FNVFAPSQAAMDEAKELIEGYMVKERVPDLEFGGIYTAKITELRDTGVMVILYPSMPPAL 705

Query:   711 LHVSELSHEPVSRVSDV-VSVGQQLSLRCIGQD-VRGNIKLSLKAV 754
             LH S+L    ++  S + + VGQ++ ++  G+D V G ++LS K +
Sbjct:   706 LHNSQLDQRKIAHPSTLNLEVGQEIQVKYFGRDPVSGFMRLSRKVL 751


>UNIPROTKB|F1NU18 [details] [associations]
            symbol:PNPT1 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA]
            [GO:0000958 "mitochondrial mRNA catabolic process" evidence=IEA]
            [GO:0000962 "positive regulation of mitochondrial RNA catabolic
            process" evidence=IEA] [GO:0000964 "mitochondrial RNA 5'-end
            processing" evidence=IEA] [GO:0000965 "mitochondrial RNA 3'-end
            processing" evidence=IEA] [GO:0004654 "polyribonucleotide
            nucleotidyltransferase activity" evidence=IEA] [GO:0005758
            "mitochondrial intermembrane space" evidence=IEA] [GO:0005886
            "plasma membrane" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
            evidence=IEA] [GO:0034046 "poly(G) RNA binding" evidence=IEA]
            [GO:0034599 "cellular response to oxidative stress" evidence=IEA]
            [GO:0035198 "miRNA binding" evidence=IEA] [GO:0035458 "cellular
            response to interferon-beta" evidence=IEA] [GO:0035928 "rRNA import
            into mitochondrion" evidence=IEA] [GO:0043457 "regulation of
            cellular respiration" evidence=IEA] [GO:0045025 "mitochondrial
            degradosome" evidence=IEA] [GO:0045926 "negative regulation of
            growth" evidence=IEA] [GO:0061014 "positive regulation of mRNA
            catabolic process" evidence=IEA] [GO:0070207 "protein
            homotrimerization" evidence=IEA] [GO:0070584 "mitochondrion
            morphogenesis" evidence=IEA] [GO:0071042 "nuclear
            polyadenylation-dependent mRNA catabolic process" evidence=IEA]
            [GO:0071850 "mitotic cell cycle arrest" evidence=IEA] [GO:0097222
            "mitochondrial mRNA polyadenylation" evidence=IEA] [GO:2000627
            "positive regulation of miRNA catabolic process" evidence=IEA]
            [GO:2000772 "regulation of cellular senescence" evidence=IEA]
            InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR012162
            InterPro:IPR015848 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
            PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847
            Pfam:PF01138 GO:GO:0005886 GO:GO:0008266 GO:GO:0005758
            GO:GO:0034599 GO:GO:0006378 GO:GO:0045926 GO:GO:0035198
            GO:GO:0070207 GO:GO:0035458 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0034046
            GO:GO:0000958 GO:GO:0071850 GO:GO:0000175 GO:GO:0043457
            GO:GO:0071042 InterPro:IPR022967 SMART:SM00316 GO:GO:0045025
            Pfam:PF03725 SUPFAM:SSF55666 GO:GO:0061014 GO:GO:2000772
            GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 OMA:YTMRVVS GO:GO:0000965 GO:GO:0000964
            GO:GO:2000627 GO:GO:0000962 GO:GO:0035928
            GeneTree:ENSGT00390000014001 EMBL:AADN02046838 IPI:IPI00587631
            Ensembl:ENSGALT00000012892 Uniprot:F1NU18
        Length = 714

 Score = 1158 (412.7 bits), Expect = 1.4e-117, P = 1.4e-117
 Identities = 261/688 (37%), Positives = 400/688 (58%)

Query:    86 VLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVG 145
             ++ + +T V+ T  S    S   F+PL VDY++K  A G IP  Y+RRE    ++E+L  
Sbjct:     2 LIQLGDTAVMVTAVSKTKPSASQFMPLVVDYRQKAAAAGRIPTNYLRRELGTTDKEILTS 61

Query:   146 RIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDXXXXXXXXXX 205
             R+IDR IRPLFP G++++ Q++ ++L+ DG  DPD++A N  SAAL LSD          
Sbjct:    62 RVIDRSIRPLFPVGYFYDTQILCNLLAVDGVNDPDVLAINGASAALALSDIPWNGPVGAV 121

Query:   206 XXXXXXXQFIVNPTMDELSLSDLNLVYACT-REKTLMIDVQAREISEKDLEAGLRLAHPE 264
                    + ++NPT  ++S S LNLV A   + + +M++  A  I ++D    +++   +
Sbjct:   122 RVGLVDGETVINPTRKQMSSSTLNLVVAAAPQNQVVMLEATAENILQQDFCHAIKVGVKQ 181

Query:   265 AVKYLEPQIRLAEKAGKQKKEY-KLSMISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGE 323
                 ++   +L ++ G  K+   KL +  E+ +E    LA   I AVFTD S+ K  R E
Sbjct:   182 TQHIIQGIQQLVKERGVVKRTVQKLFVAPEEIVECAKKLAFNKIYAVFTDFSHDKISRDE 241

Query:   324 ALDKIGQDVKKALEEECDEESLQVLPKAVDTXXXXXXXXXXXAEGVRVDGRQLDEVRPIY 383
             A++KI  + ++ L+E+  E     + ++ +             E  R DGR L  +R I 
Sbjct:   242 AINKIRLETEEQLKEKFPEAEPYEIMESFNAVSKVIFRNLILNEYRRCDGRDLTSLRDIK 301

Query:   384 CESGNLPILHGSSLFSRGDTQVLCTVT---LGAPAEAQRLESLV-GPPTKRFMLHYSFPP 439
             CE     +LHGS+LF RG TQVLCTVT   + +  ++  + + V G   K FMLHY FPP
Sbjct:   302 CEVNMFKMLHGSALFQRGQTQVLCTVTFDSIESSVKSDLISTAVSGIKDKNFMLHYEFPP 361

Query:   440 FCINEVGKRVGLNRREVGH-GTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATV 498
             +  NE+GK  G+NRRE+GH G LAE+AL  V+P   DFP+T+RV SEV+ S+GS+SMA+ 
Sbjct:   362 YATNEIGKVTGVNRRELGHAGALAERALKPVIP--QDFPFTIRVTSEVLESNGSSSMASA 419

Query:   499 CGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIA 558
             CGGS+ALMDAG+P+   VAGV+VGLV++ DP   +I+DYR+LTDILG+ED+ GDMDFK+A
Sbjct:   420 CGGSLALMDAGVPVSSAVAGVAVGLVTKYDPEGRDIEDYRLLTDILGIEDYYGDMDFKMA 479

Query:   559 GTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLA 618
             GT  GVTA+Q+D+K  GIP+ II E ++ A   + +IL  M   ++ PR     + P + 
Sbjct:   480 GTSKGVTALQVDLKLPGIPIKIIMEAIQQATAAKREILQIMNETLAKPRPNRKESGPVVE 539

Query:   619 TLKYDNDTLRRLIGPLGALK-RKIEEETGGRIS-VSDGTLTVVAKNRSVMEKVLEKVDFI 676
             T+        R +GP GA   +K++ +TG  +S + + T ++ A   S M +  E +  +
Sbjct:   540 TIHVPLSKRLRFLGP-GAYNLKKLQAKTGVTLSQLDEETYSMFAPTPSAMHEAREFIGEL 598

Query:   677 I--GREI--EVGGIYKGVVTSVKEYGAFVEFNGGQQG-LLHVSELSHEPVSRVSDV-VSV 730
                 +E+  E G IY   +T +++ G  V+        LLH S+L    +   S + + V
Sbjct:   599 CKDDQEVNLEFGAIYTATITEIRDSGVMVKLYPNMTPVLLHNSQLDQRKIKHPSALGLEV 658

Query:   731 GQQLSLRCIGQD-VRGNIKLSLKAV-SP 756
             GQ++ ++  G+D   G ++LS K + SP
Sbjct:   659 GQEIQVKYFGRDPTDGRMRLSRKVLQSP 686


>UNIPROTKB|E2QWK2 [details] [associations]
            symbol:PNPT1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006402 "mRNA catabolic process"
            evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000175
            "3'-5'-exoribonuclease activity" evidence=IEA] InterPro:IPR003029
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
            InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
            PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
            InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0003723
            GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
            InterPro:IPR022967 SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666
            GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 OMA:YTMRVVS GeneTree:ENSGT00390000014001
            EMBL:AAEX03007533 Ensembl:ENSCAFT00000004640 Uniprot:E2QWK2
        Length = 789

 Score = 1123 (400.4 bits), Expect = 7.3e-114, P = 7.3e-114
 Identities = 259/714 (36%), Positives = 397/714 (55%)

Query:    64 EIGSRL--ITLETGKIA-RFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQ 120
             ++GSR+  +    GK+  +  N A  L   +T V+ T  S    S   F+PL VDY++K 
Sbjct:    50 DLGSRMRRLVYVKGKLGNKTDNTAYFLSSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA 109

Query:   121 FAQGVIPNTYMRREGAPKERELLVGRII-DRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
              A G IP  Y+RRE    ++E+L  R+I DR IRPLFPAG++++ Q   + +     +  
Sbjct:   110 AAAGRIPTNYLRREVGSSDKEVLTSRVIADRSIRPLFPAGYFYDTQYFVNRILFQNNEPY 169

Query:   180 DIMAANATSAALMLSDX--XXXXXXXXXXXXXXXXQFIVNPTMDELSLSDLNLVYA-CTR 236
              +M  N  +  L   D                   + +VNPT  E+S S LNLV A   +
Sbjct:   170 ALMLINRKTVLLCNKDVLWALNTILGAVRIGMIDGECVVNPTRKEMSSSTLNLVVAGAPK 229

Query:   237 EKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKE-YKLSMISEQT 295
              + +M++  A  I ++D    +++      + ++   +L ++ G  K+   KL   S + 
Sbjct:   230 SQIVMMEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVTKRTPQKLFTPSPEI 289

Query:   296 LEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTX 355
             +E +  L    + AVFTD  + K  R EA++KI  D ++ L+E+  E     + ++ +  
Sbjct:   290 VEHIHKLTMERLYAVFTDYEHDKISRDEAINKIRLDTEEQLKEKFPEADTYEIIESFNVV 349

Query:   356 XXXXXXXXXXAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT---LG 412
                        E  R DGR L  +R I CE      LHGS+LF RG TQV CTVT   L 
Sbjct:   350 AKEVFRSIILNEYKRCDGRDLTSLRNINCEVDLFKTLHGSALFQRGQTQVFCTVTFDSLE 409

Query:   413 APAEAQRLESLV-GPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
             +  ++ R+ + + G   K FMLHY FPP+  NE+GK  G+NRRE+GHG LAEKAL  V+P
Sbjct:   410 SSIKSDRIITAINGIKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHGALAEKALYPVIP 469

Query:   472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
                DFP+T+RV SEV+ S+GS+SMA+ CGGS+ALMDAG+P+   VAGV++GLV++ +P  
Sbjct:   470 --KDFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAIGLVTKNNPDK 527

Query:   532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
             GEI+DYR+LTDILG+ED+ GDMDFKIAGT  G+TA+Q DIK  GIP+ I+ E ++ A   
Sbjct:   528 GEIEDYRLLTDILGIEDYNGDMDFKIAGTSKGITALQADIKLPGIPIKIVMEAIQQASVA 587

Query:   592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS- 650
             + +IL  M + IS PR     N P + T++       + +GP G   +K++ ETG  +S 
Sbjct:   588 KREILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYHLKKLQAETGVTVSQ 647

Query:   651 VSDGTLTVVAKNRSVMEKVLEKVDFIIG----REIEVGGIYKGVVTSVKEYGAFVEFNGG 706
             V + T +V A   S M +  + +  +      +++E G +Y   +T +++ G  V+    
Sbjct:   648 VDEETFSVFAPTPSAMHEARDFITELCKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPN 707

Query:   707 QQG-LLHVSELSHEPVSRVSDV-VSVGQQLSLRCIGQD-VRGNIKLSLKAV-SP 756
                 LLH ++L    +   + + + VGQ++ ++  G+D   G ++LS K + SP
Sbjct:   708 MTAVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVLQSP 761


>TAIR|locus:2079429 [details] [associations]
            symbol:RIF10 "AT3G03710" species:3702 "Arabidopsis
            thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
            evidence=IGI;ISS] [GO:0003676 "nucleic acid binding" evidence=ISS]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0004654
            "polyribonucleotide nucleotidyltransferase activity" evidence=IGI]
            [GO:0006401 "RNA catabolic process" evidence=IGI] [GO:0031425
            "chloroplast RNA processing" evidence=IGI] [GO:0009507
            "chloroplast" evidence=IDA] [GO:0009570 "chloroplast stroma"
            evidence=IDA] [GO:0010323 "negative regulation of isopentenyl
            diphosphate biosynthetic process, mevalonate-independent pathway"
            evidence=IMP] [GO:0015995 "chlorophyll biosynthetic process"
            evidence=IMP] [GO:0016120 "carotene biosynthetic process"
            evidence=IMP] [GO:0016123 "xanthophyll biosynthetic process"
            evidence=IMP] [GO:0016036 "cellular response to phosphate
            starvation" evidence=IMP] HAMAP:MF_01595 InterPro:IPR003029
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
            InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 PROSITE:PS50084
            PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847
            Pfam:PF01138 GO:GO:0009570 EMBL:CP002686 GO:GO:0006397
            GO:GO:0003723 GO:GO:0006401 GO:GO:0008033 GO:GO:0006402
            GO:GO:0016036 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            EMBL:AC009540 InterPro:IPR020568 SUPFAM:SSF54211 EMBL:AC009327
            GO:GO:0016123 GO:GO:0006364 GO:GO:0015995 GO:GO:0000175
            GO:GO:0016120 InterPro:IPR022967 SMART:SM00316 Pfam:PF03725
            SUPFAM:SSF55666 EMBL:AJ252123 EMBL:AF450480 IPI:IPI00534675
            RefSeq:NP_187021.2 UniGene:At.26536 HSSP:Q53597
            ProteinModelPortal:Q8GZQ3 SMR:Q8GZQ3 STRING:Q8GZQ3 PRIDE:Q8GZQ3
            EnsemblPlants:AT3G03710.1 GeneID:821181 KEGG:ath:AT3G03710
            GeneFarm:4127 TAIR:At3g03710 HOGENOM:HOG000218327 InParanoid:Q8GZQ3
            KO:K00962 OMA:AQRIDNL PhylomeDB:Q8GZQ3 ProtClustDB:PLN00207
            ArrayExpress:Q8GZQ3 Genevestigator:Q8GZQ3 GO:GO:0004654
            GO:GO:0031425 GO:GO:0010323 Gene3D:1.10.10.400 PANTHER:PTHR11252
            SUPFAM:SSF46915 TIGRFAMs:TIGR03591 Uniprot:Q8GZQ3
        Length = 922

 Score = 771 (276.5 bits), Expect = 1.2e-108, Sum P(2) = 1.2e-108
 Identities = 173/399 (43%), Positives = 249/399 (62%)

Query:   368 GVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPP 427
             G R DGR LDE+RPI    G LP  HGS+LF+RG+TQ L  VTLG    AQR+++L G  
Sbjct:   445 GKRSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSD 504

Query:   428 T-KRFMLHYSFPPFCINEVGKRVGL-NRREVGHGTLAEKALLAVLPPENDFPYTVRVNSE 485
               KRF L Y+FPP  + EVG R+G  +RRE+GHGTLAE+AL  +LP ++DFPYT+RV S 
Sbjct:   505 EYKRFYLQYTFPPSSVGEVG-RIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVEST 563

Query:   486 VMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILG 545
             V+ S+GS+SMA+VCGG +AL DAG+P++  VAG+++G+V + +   G+     IL+DI G
Sbjct:   564 VIESNGSSSMASVCGGCLALQDAGVPVKCSVAGIAMGMVWDTEEFGGDGSPL-ILSDITG 622

Query:   546 LEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISA 605
              ED  GDMDFK+AG   GVTA Q+DIK  GI L+I+ + L  A  GR  IL  M +    
Sbjct:   623 AEDASGDMDFKVAGNEDGVTAFQMDIKVGGITLEIMEKALIQAKAGRRHILAEMAKCSPP 682

Query:   606 PRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR-ISVSD-GTLTVVAKNR 663
             P     + +P +  +K     +  LIG  G   + I EE+G   I + D GT+ ++A + 
Sbjct:   683 PTLSLSKYAPLILIMKVHPSKVYSLIGSGGKKVKSIIEESGVEAIDMQDDGTVKIMAIDV 742

Query:   664 SVMEKVLEKVDFIIGREIEVGGIYKGV-VTSVKEYGAFVEFNGGQQGLLHVSELSHEPVS 722
             + +E+    +  +      VG IY+   + S+  YGAFVE   G++GL H+SELS E ++
Sbjct:   743 ASLERAKAIISGLT-MVPSVGDIYRNCEIKSMAPYGAFVEIAPGREGLCHISELSAEWLA 801

Query:   723 RVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEAD 761
             +  D   VG ++ ++ I  + +G ++LS++A+ P  E D
Sbjct:   802 KPEDAYKVGDRIDVKLIEVNEKGQLRLSVRALLPESETD 840

 Score = 323 (118.8 bits), Expect = 1.2e-108, Sum P(2) = 1.2e-108
 Identities = 101/322 (31%), Positives = 153/322 (47%)

Query:    66 GSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQFAQG 124
             G+R I +ETG + R A+ AV +   ET V ++V  +   S   DFLPL V YQE+  A G
Sbjct:    95 GNREILVETGLMGRQASSAVTVTDGETIVYTSVCLADVPSEPSDFLPLYVHYQERFSAVG 154

Query:   125 VIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAA 184
                  + +REG  K+ E+L+ R+IDRP+RP  P GFY+E Q+++ VLS DG   PD +A 
Sbjct:   155 RTSGGFFKREGRTKDHEVLICRLIDRPLRPTMPKGFYNETQILSWVLSYDGLHAPDALAV 214

Query:   185 NATSAALMLSDXXXXXXXXXXXXXXXXXQFIVNPTMDELSLSDLNLVYACTREKTLMIDV 244
              +   A+ LS+                 +FIVNPT+ E+  S L+L  A T    L I+ 
Sbjct:   215 TSAGIAVALSEVPNAKAIAGVRVGLIGGEFIVNPTVKEMEESQLDLFLAGTDTAILTIEG 274

Query:   245 QAREISEKDLEAGLRLAHPEAVKYLEPQIR-LAEKAGKQKKEYKLSMISEQTLEKVSNLA 303
              +  + E+ L   +++   +AV+     I  LA+K GK K    + +   +  + V  LA
Sbjct:   275 YSNFLPEEMLLQAVKVGQ-DAVQATCIAIEVLAKKYGKPKMLDAIRLPPPELYKHVKELA 333

Query:   304 EAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEE---CDEESLQVLPKAVDTXXXXXX 360
                +       S  K  R +A+  + + V   L E+    DE +   +    D       
Sbjct:   334 GEELTKALQIKS--KISRRKAISSLEEKVLTILTEKGYVIDEVAFGTIEAQPDLLEDEDE 391

Query:   361 XXXXXAEGVRVDGRQLDEVRPI 382
                   EG  VD   +  +RPI
Sbjct:   392 DEEVVPEG-EVDQGDV-HIRPI 411


>UNIPROTKB|O33325 [details] [associations]
            symbol:pnp "Polyribonucleotide nucleotidyltransferase"
            species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
            evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
            "plasma membrane" evidence=IDA] HAMAP:MF_01595 InterPro:IPR003029
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
            InterPro:IPR014069 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
            Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
            SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
            GO:GO:0005829 GO:GO:0005886 GO:GO:0005618 EMBL:AE000516
            GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR EMBL:BX842580
            GO:GO:0003723 GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
            SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
            HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
            GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
            ProtClustDB:PRK11824 PIR:F70883 RefSeq:NP_217299.1
            RefSeq:NP_337358.1 RefSeq:YP_006516229.1 ProteinModelPortal:O33325
            SMR:O33325 PRIDE:O33325 EnsemblBacteria:EBMYCT00000001176
            EnsemblBacteria:EBMYCT00000071784 GeneID:13317568 GeneID:888467
            GeneID:925429 KEGG:mtc:MT2853 KEGG:mtu:Rv2783c KEGG:mtv:RVBD_2783c
            PATRIC:18128028 TubercuList:Rv2783c TIGRFAMs:TIGR02696
            Uniprot:O33325
        Length = 752

 Score = 804 (288.1 bits), Expect = 1.0e-107, Sum P(2) = 1.0e-107
 Identities = 200/527 (37%), Positives = 295/527 (55%)

Query:   241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKK---EYKLSM-ISEQTL 296
             +++  A+  +E  + AGL  A P        Q  LA+ AGK  K   ++ +     E   
Sbjct:   216 LVEGGAQAPTESVVAAGLEAAKPFIAALCTAQQELADAAGKSGKPTVDFPVFPDYGEDVY 275

Query:   297 EKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTXX 356
               VS++A   + A  T     K ER + +D+I   V + L +  +    +V   A+    
Sbjct:   276 YSVSSVATDELAAALTIGG--KAERDQRIDEIKTQVVQRLADTYEGREKEV-GAALRALT 332

Query:   357 XXXXXXXXXAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
                       +  R+DGR + ++R +  E   +P  HGS+LF RG+TQ+L   TL     
Sbjct:   333 KKLVRQRILTDHFRIDGRGITDIRALSAEVAVVPRAHGSALFERGETQILGVTTLDMIKM 392

Query:   417 AQRLESLVGPPT-KRFMLHYSFPPFCINEVGKRVGL-NRREVGHGTLAEKALLAVLPPEN 474
             AQ+++SL GP T KR+M HY+FPPF   E G RVG   RRE+GHG LAE+AL+ VLP   
Sbjct:   393 AQQIDSL-GPETSKRYMHHYNFPPFSTGETG-RVGSPKRREIGHGALAERALVPVLPSVE 450

Query:   475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSE---VDPST 531
             +FPY +R  SE + S+GSTSM +VC  ++AL++AG+PL+  VAG+++GLVS+   V+ + 
Sbjct:   451 EFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSDDIQVEGAV 510

Query:   532 GEIKDYRI--LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
               + + R   LTDILG ED  GDMDFK+AGT+  VTA+QLD K  GIP  ++   LE A 
Sbjct:   511 DGVVERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPSQVLAGALEQAK 570

Query:   590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
               RL IL+ M   I  P       +PR+ T+K   D +  +IGP G +   I EETG +I
Sbjct:   571 DARLTILEVMAEAIDRPDEMSPY-APRVTTIKVPVDKIGEVIGPKGKVINAITEETGAQI 629

Query:   650 SVSD-GTLTVVAKNRSVMEKVLEKVDFIIGREIE-VGGIYKGVVTSVKEYGAFVEFNGGQ 707
             S+ D GT+ V A +    +  ++K++ I   ++  VG  + G V    ++GAFV    G+
Sbjct:   630 SIEDDGTVFVGATDGPSAQAAIDKINAIANPQLPTVGERFLGTVVKTTDFGAFVSLLPGR 689

Query:   708 QGLLHVSELSH-EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKA 753
              GL+H+S+L   + +++V DVV+VG +L +     D RG I L L A
Sbjct:   690 DGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKISLILVA 736

 Score = 281 (104.0 bits), Expect = 1.0e-107, Sum P(2) = 1.0e-107
 Identities = 78/237 (32%), Positives = 118/237 (49%)

Query:    66 GSRLITLETGKIARFANGAVVLGMDETKVL-STVTSSKGDSVR-DFLPLTVDYQEKQFAQ 123
             G+R I  ETG++A  A GAVV  +D+  +L S  T+SK      DF PLTVD +E+ +A 
Sbjct:    23 GTRTIRFETGRLALQAAGAVVAYLDDDNMLLSATTASKNPKEHFDFFPLTVDVEERMYAA 82

Query:   124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
             G IP ++ RREG P    +L  R+IDRP+RP F  G  +E+Q++ ++LS D     D++A
Sbjct:    83 GRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQIVVTILSLDPGDLYDVLA 142

Query:   184 ANATSAALMLSDXXXXXXXXXXXXXXXXXQFIVNPTMDELSLSDLNLVYACTREK----T 239
              NA SA+  L                    ++  PT+D++  +  ++V A    +     
Sbjct:   143 INAASASTQLGGLPFSGPIGGVRVALIDGTWVGFPTVDQIERAVFDMVVAGRIVEGDVAI 202

Query:   240 LMIDVQAREI------------SEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKK 284
             +M++ +A E             +E  + AGL  A P        Q  LA+ AGK  K
Sbjct:   203 MMVEAEATENVVELVEGGAQAPTESVVAAGLEAAKPFIAALCTAQQELADAAGKSGK 259


>TIGR_CMR|CJE_1390 [details] [associations]
            symbol:CJE_1390 "polyribonucleotide
            nucleotidyltransferase" species:195099 "Campylobacter jejuni
            RM1221" [GO:0004654 "polyribonucleotide nucleotidyltransferase
            activity" evidence=ISS] [GO:0006402 "mRNA catabolic process"
            evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
            InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
            Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
            PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
            InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
            GO:GO:0006396 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0006402
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
            SMART:SM00316 HSSP:Q9UXC2 Pfam:PF03725 SUPFAM:SSF55666
            eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
            PANTHER:PTHR11252 SUPFAM:SSF46915 OMA:YTMRVVS HOGENOM:HOG000218326
            ProtClustDB:PRK11824 RefSeq:YP_179377.1 ProteinModelPortal:Q5HTK8
            STRING:Q5HTK8 GeneID:3231896 KEGG:cjr:CJE1390 PATRIC:20044580
            BioCyc:CJEJ195099:GJC0-1417-MONOMER Uniprot:Q5HTK8
        Length = 719

 Score = 657 (236.3 bits), Expect = 1.3e-99, Sum P(3) = 1.3e-99
 Identities = 180/494 (36%), Positives = 265/494 (53%)

Query:   248 EISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHI 307
             E+SE ++   L LA  +A+  L       E   K KK  ++ + +E    ++    E + 
Sbjct:   217 ELSEDEILEALNLAQ-KAI--LNGSNAYEEAFSKHKKNSQIELKNEIEYPEILAFIENNF 273

Query:   308 EAVFTDP--SYSKFERGEALDKIGQDVKKA-LEEECDEES-LQVLPKAVDTXXXXXXXXX 363
             +    +     +K ER   L+KI +++    + +E  EES L  L K             
Sbjct:   274 QKQIKEAINQMAKSERASELNKIAKEISNLEIAKEWSEESVLNTLAKV----KRKLIRGQ 329

Query:   364 XXAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESL 423
                EG R DGR L+EVRPI  E+  LP  HGS LF+RG TQ L   TLG   +AQ ++ L
Sbjct:   330 ILNEGKRADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLL 389

Query:   424 V--GPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
                 P ++RFM++Y+FP F + E        RRE+GHG LA++AL   +  EN +PY +R
Sbjct:   390 TEKNPISERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVD-EN-YPYVIR 447

Query:   482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
             + SE++ S+GS+SMATVCGGS+AL  AG+P  + VAGV++GL+ E D        Y +LT
Sbjct:   448 LVSEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFE-D------NKYAVLT 500

Query:   542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
             DI+GLEDH GDMDFK+AG++ GVTA+Q+DIK  GI  + + + L  A +GR+ IL+ ME 
Sbjct:   501 DIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIME- 559

Query:   602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSDGTLTVVAK 661
             E +     ++   P+L     D   +  +IG  G   ++I E+ G  I + D     V  
Sbjct:   560 EAAKEIIVNEEVLPKLELFSVDPSKIVDIIGQAGKTIKEIVEKFGVSIDL-DREKGEVKI 618

Query:   662 NRSVMEKVLEKVDFIIG--------------REI---EVGGIYKGVVTSVKEYGAFVEFN 704
               S  E++    D+II               ++I   E+G  ++G+V  +  +GAFVE  
Sbjct:   619 AGSQNEQIKAAKDYIINITSSQKGTKKGSKDKDISGFELGQEFQGIVKKIAPFGAFVELK 678

Query:   705 GGQQGLLHVSELSH 718
              G  GLLH S+  H
Sbjct:   679 NGVDGLLHSSKSKH 692

 Score = 324 (119.1 bits), Expect = 1.3e-99, Sum P(3) = 1.3e-99
 Identities = 73/183 (39%), Positives = 102/183 (55%)

Query:    64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
             EI          K+A+ A GAV++   ++ VL+TV   +     DFLPLTV Y EK +A 
Sbjct:     6 EINKNTEIFNIDKVAKQAAGAVLMRQGKSVVLATVAREEKQVEEDFLPLTVQYIEKAYAA 65

Query:   124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
             G IP  Y++RE  P + E L  RIIDR +RPLFP G+ +  Q++  VLS+D K D  +M+
Sbjct:    66 GKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDLQVMS 125

Query:   184 ANATSAALMLSDXXXXXXXXXXXXXXXXXQFIVNPTMDELSLSDLNLVYACTREKTLMID 243
              NA S AL LSD                  FI+NP  +EL  S L+L  A  +++ LMI+
Sbjct:   126 LNAASVALYLSDIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKDELLMIE 185

Query:   244 VQA 246
             ++A
Sbjct:   186 MRA 188

 Score = 41 (19.5 bits), Expect = 1.3e-99, Sum P(3) = 1.3e-99
 Identities = 16/71 (22%), Positives = 30/71 (42%)

Query:   895 KGTRVEAIVSAKNLKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNEKKDFVVGDEL 954
             KG++ + I      +LG +    V ++   G  ++L  G+ G+     ++  +      L
Sbjct:   645 KGSKDKDI---SGFELGQEFQGIVKKIAPFGAFVELKNGVDGLLHSSKSKHLNLSENQSL 701

Query:   955 LVKCSSF-TGK 964
              VK S    GK
Sbjct:   702 KVKISEIKNGK 712

 Score = 37 (18.1 bits), Expect = 2.3e-24, Sum P(2) = 2.3e-24
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query:   636 ALKRKIEEETGGRISV 651
             +LK KI E   G+ISV
Sbjct:   700 SLKVKISEIKNGKISV 715


>TIGR_CMR|NSE_0057 [details] [associations]
            symbol:NSE_0057 "polyribonucleotide
            nucleotidyltransferase" species:222891 "Neorickettsia sennetsu str.
            Miyayama" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
            "polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
            [GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
            InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
            InterPro:IPR009019 InterPro:IPR012162 InterPro:IPR015848
            Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
            PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
            InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
            GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 EMBL:CP000237
            GenomeReviews:CP000237_GR GO:GO:0000175 InterPro:IPR022967
            SMART:SM00316 SUPFAM:SSF54814 Pfam:PF03725 SUPFAM:SSF55666
            eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
            PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
            HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:YP_505958.1
            ProteinModelPortal:Q2GEY8 STRING:Q2GEY8 GeneID:3931805
            KEGG:nse:NSE_0057 PATRIC:22680229 BioCyc:NSEN222891:GHFU-94-MONOMER
            Uniprot:Q2GEY8
        Length = 757

 Score = 977 (349.0 bits), Expect = 2.2e-98, P = 2.2e-98
 Identities = 246/717 (34%), Positives = 381/717 (53%)

Query:    55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT------SSKGDSVRD 108
             + E  +   E   + + ++TG++AR A GA  +    T VL+ VT      +SK  S   
Sbjct:     1 MFEIKESSMEWEGKSLHIKTGEVARQAAGAACVSYGGTVVLAVVTLQKDTAASKKTSDLS 60

Query:   109 FLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMA 168
              L L  ++  K +A G IPN + +REG   ERE+L  R++DR +RPL      +EV ++ 
Sbjct:    61 GLALVTNFLAKSYALGRIPNGFFKREGKLSEREVLASRVVDRAVRPLIEENLVNEVNIVC 120

Query:   169 SVLSSDGKQD-PDIMAANATSAALMLSDXXXXXXXXXXXXXXXXXQFIVNPTMDELSLSD 227
              +L+   ++  P+I A  A SAAL LS                  +   N   +  +   
Sbjct:   121 KLLAHGNRKVLPEIPALIAASAALQLSGIPFSGPVIGVDVDMRGSEVTCNEIRE--TEGG 178

Query:   228 LNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYK 287
             L L  ACT E  +M++ +A E SE+++   L     EA+K  +P      +  K     K
Sbjct:   179 LELFVACTEESVVMVEAEASEASEEEVVNALS----EALKSAKPVFSFINEFVKSVTTVK 234

Query:   288 -LSMI--SEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEES 344
              + ++  +++  EKV       +E+V+ +   SK +R   L +I  D    L ++   ES
Sbjct:   235 PIGVLYDNKELCEKVRAACSGQLESVYNERISSKEKRHNKLGQIYTDTFAQLSDDGYAES 294

Query:   345 LQVLPKAVDTXXXXXXXXXXXAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQ 404
              +VL   +              EG+R DGR L E+RPI      LP  HGS+LF+RG TQ
Sbjct:   295 -EVL-FFIKKLEKEIVRKNVLEEGIRPDGRSLTEIRPISIALDYLPGTHGSALFTRGGTQ 352

Query:   405 VLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEK 464
              L   TLG+  + Q ++ + G   +  +LHY+F P+ + EVG      RRE+GHG LA K
Sbjct:   353 SLVVATLGSYQDEQVMDDIDGERRESVLLHYNFLPYAVGEVGALRAPGRREIGHGRLALK 412

Query:   465 ALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLV 524
             A+ AVLP +  FPYT+R+ SE+  SDGS+SMATVCG S+ALMD G+P+ +HVAG+++GL+
Sbjct:   413 AVKAVLPGKEVFPYTLRLVSEITESDGSSSMATVCGSSLALMDTGVPITKHVAGIAMGLI 472

Query:   525 SEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICEC 584
             ++   S        +L+DI G ED LGDMDFK+AGTR G+ A+Q+D+K  GI +  I + 
Sbjct:   473 TDGVRSA-------VLSDISGDEDMLGDMDFKVAGTRNGIVALQMDMKVRGISIATIRDA 525

Query:   585 LEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEE 644
             L  A  GRL IL+ ME  I+ PR     ++P++   K D D + ++IG  G   R I  +
Sbjct:   526 LNQALAGRLHILEKMEHVIAKPRESLKDSAPKILCYKIDKDVVHKVIGSGGKTIRGISSD 585

Query:   645 TGGRISVSDGTLT-VVAKNRSVMEKVLEKVDFIIGR------EIEVGGIYKGVVTSVKEY 697
             T  +I +       ++A     + +   +VD   G       ++++G +Y G + SV ++
Sbjct:   586 TSAKIDIDQNNYVYIMADTEEALMEAKTRVDMASGASDSNVPQLKIGELYDGKIVSVVDF 645

Query:   698 GAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRC--IGQDVRGNIKLSLK 752
             G FV     Q+GL+H+SE+S   V+ +    + GQ +++R   IG D  G IKL+++
Sbjct:   646 GLFVVLPNKQEGLVHISEISKNRVNDIRADYTEGQAVTVRIKDIGSD--GKIKLTMR 700


>WB|WBGene00015266 [details] [associations]
            symbol:BE0003N10.1 species:6239 "Caenorhabditis elegans"
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004654
            "polyribonucleotide nucleotidyltransferase activity" evidence=IEA]
            [GO:0006402 "mRNA catabolic process" evidence=IEA] [GO:0000175
            "3'-5'-exoribonuclease activity" evidence=IEA] [GO:0006396 "RNA
            processing" evidence=IEA] InterPro:IPR003029 InterPro:IPR012162
            InterPro:IPR015848 Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50126
            InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0003723
            GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
            InterPro:IPR022967 SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666
            eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
            PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591
            GeneTree:ENSGT00390000014001 EMBL:FO080241 RefSeq:NP_497324.3
            UniGene:Cel.33878 ProteinModelPortal:Q965N3 SMR:Q965N3 PaxDb:Q965N3
            EnsemblMetazoa:BE0003N10.1 GeneID:175269 KEGG:cel:CELE_BE0003N10.1
            UCSC:BE0003N10.1 CTD:175269 WormBase:BE0003N10.1 InParanoid:Q965N3
            OMA:PWNGPVX NextBio:887466 Uniprot:Q965N3
        Length = 738

 Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
 Identities = 253/715 (35%), Positives = 380/715 (53%)

Query:    62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT---SSKGDSVRDFLPLTVDYQE 118
             +F+ G   I L+ G +ARFA+  VV    +  V++TV    S +GD     +PL V+Y+ 
Sbjct:    31 DFD-GKSGIELKAGHLARFASSTVVASFGDNAVMATVVQRKSKQGDG--SGVPLQVEYRP 87

Query:   119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
                A G IP  ++RRE +  + E+L+ R IDR IRPL P   Y E Q++   L+ D   D
Sbjct:    88 SASAIGRIPTNFLRRELSQSDNEILISRAIDRSIRPLLPGNSY-ETQIICKPLALDENAD 146

Query:   179 PDIMAANATSAALMLSDXXXXX-XXXXXXXXXXXXQFIVNPTMDELSLSDLNLVYACTR- 236
               ++  NA S AL +S                    F VNPT +EL  + LNL+ A  + 
Sbjct:   147 QIMLGINAASTALQISSAAYNGPLAALRVARTARGDFHVNPTQEELREASLNLIVAMRKH 206

Query:   237 EKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTL 296
             EKT+MI++  RE S + LE  L +A     K  E   +L  +   +      S + E+ L
Sbjct:   207 EKTVMIELDGRESSAEHLEHALDVAFRHVAKLHEAMEQLTAEPKDELASEDFSGL-ERLL 265

Query:   297 EKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDV--KKALEEECDEESLQVLPKAVDT 354
             E+    A   I  V TD  + K  R   +  I +++  +KA +  C+++++    +   T
Sbjct:   266 EET---ARERIYYVITDAGHDKISRDMEIKAIFEEICAEKAFQT-CEKDAIY---RTYST 318

Query:   355 XXXXXXXXXXXAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAP 414
                          G+R DGR+ DE RPI         LHG S+F RG TQV+ TVT  +P
Sbjct:   319 LVKKVLRDTTLRTGIRCDGRRPDEFRPITIHVDMYKKLHGCSIFQRGQTQVMSTVTFDSP 378

Query:   415 AEAQRLES---LVGPPTKR-FMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
             A A   +S   L+G   K+ FMLHY FP F INE G    LNRRE+GHG LAEK+L  + 
Sbjct:   379 AAAFHPDSVAQLLGSQRKKSFMLHYEFPGFAINEFGTTRSLNRREIGHGALAEKSLKNLF 438

Query:   471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVS-EVDP 529
             P   DFPY  R+  +V+ S+GS+SMA+VCGGS+AL DAG+P++   AGV++GL+S E +P
Sbjct:   439 PA--DFPYATRLACQVLESNGSSSMASVCGGSLALFDAGVPMKNAAAGVAIGLISDEAEP 496

Query:   530 STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
              T     YR+LTDILG+ED+ GDMDFK+AGTR G TA QLD+K  G+    + E L+ A 
Sbjct:   497 ET----KYRVLTDILGIEDYAGDMDFKVAGTRDGFTAAQLDVKNGGLTRRQLTESLQAAR 552

Query:   590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
              G   +L  M      PR Q     P + +++ +      L    G   + IE ETG +I
Sbjct:   553 AGIDHVLQKMSVMRDRPREQFKPTVPIIQSMRIEPHKRVTLFRNNGYNCKLIEAETGVKI 612

Query:   650 SVSDGT-LTVVAKNRSVMEKVLEKVDFIIGR----EIEVGGIYKGVVTSVKEYGAFVEFN 704
             S  D   ++++A+++  ++K ++ ++ ++      +   G I +  +  + E G ++   
Sbjct:   613 SAEDEAHISLLAQDKEKLQKAMDMMNDVLESNSTLDFAFGSIVQAEIVEIIERGVYLTLP 672

Query:   705 GGQQGL-LHVSELSHEPVSRVSDVVS--VGQQLSLRCIGQDVR-GNIKLSLKAVS 755
             G  + + +  + LS  PV R  DV+   +G ++S+   G+D   GNI+LS K ++
Sbjct:   673 GSSRRIFMSNNHLSLNPV-RHPDVLGLKIGDKMSVHWFGRDEHTGNIRLSRKTLA 726


>UNIPROTKB|H7BZ02 [details] [associations]
            symbol:PNPT1 "Polyribonucleotide nucleotidyltransferase 1,
            mitochondrial" species:9606 "Homo sapiens" [GO:0000175
            "3'-5'-exoribonuclease activity" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0004654 "polyribonucleotide
            nucleotidyltransferase activity" evidence=IEA] [GO:0006396 "RNA
            processing" evidence=IEA] [GO:0006402 "mRNA catabolic process"
            evidence=IEA] InterPro:IPR012162 InterPro:IPR015848 Pfam:PF03726
            InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0003723
            GO:GO:0006396 GO:GO:0006402 InterPro:IPR020568 SUPFAM:SSF54211
            GO:GO:0000175 Pfam:PF03725 SUPFAM:SSF55666 EMBL:AC015982
            GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 HGNC:HGNC:23166 ProteinModelPortal:H7BZ02
            SMR:H7BZ02 Ensembl:ENST00000402246 Bgee:H7BZ02 Uniprot:H7BZ02
        Length = 537

 Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
 Identities = 200/487 (41%), Positives = 294/487 (60%)

Query:    64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
             ++G+R + + +GK+ARFA+G+ V+   +T V+ T  S    S   F+PL VDY++K  A 
Sbjct:    50 DLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAA 109

Query:   124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
             G IP  Y+RRE    ++E+L  RIIDR IRPLFPAG++++ QV+ ++L+ DG  +PD++A
Sbjct:   110 GRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLA 169

Query:   184 ANATSAALMLSDXXXXXXXXXXXXXXXXXQFIVNPTMDELSLSDLNLVYA-CTREKTLMI 242
              N  S AL LSD                 +++VNPT  E+S S LNLV A   + + +M+
Sbjct:   170 INGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPKSQIVML 229

Query:   243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKE-YKLSMISEQTLEKVSN 301
             +  A  I ++D    +++      + ++   +L ++ G  K+   KL   S + ++    
Sbjct:   230 EASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKLFTPSPEIVKYTHK 289

Query:   302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTXXXXXXX 361
             LA   + AVFTD  + K  R EA++KI  D ++ L+E+  E     + ++ +        
Sbjct:   290 LAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIESFNVVAKEVFR 349

Query:   362 XXXXAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
                  E  R DGR L  +R + CE      LHGS+LF RG TQVLCTVT  +     + +
Sbjct:   350 SIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSD 409

Query:   422 SLV----GPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
              ++    G   K FMLHY FPP+  NE+GK  GLNRRE+GHG LAEKAL  V+P   DFP
Sbjct:   410 QVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIP--RDFP 467

Query:   478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
             +T+RV SEV+ S+GS+SMA+ CGGS+ALMD+G+P+   VAGV++GLV++ DP  GEI+DY
Sbjct:   468 FTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGEIEDY 527

Query:   538 RILTDIL 544
             R+LTDIL
Sbjct:   528 RLLTDIL 534


>RGD|1307987 [details] [associations]
            symbol:Pnpt1 "polyribonucleotide nucleotidyltransferase 1"
            species:10116 "Rattus norvegicus" [GO:0000175
            "3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000957
            "mitochondrial RNA catabolic process" evidence=ISO] [GO:0000958
            "mitochondrial mRNA catabolic process" evidence=ISO] [GO:0000962
            "positive regulation of mitochondrial RNA catabolic process"
            evidence=ISO] [GO:0000964 "mitochondrial RNA 5'-end processing"
            evidence=ISO] [GO:0000965 "mitochondrial RNA 3'-end processing"
            evidence=ISO] [GO:0004654 "polyribonucleotide
            nucleotidyltransferase activity" evidence=ISO] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0005739 "mitochondrion" evidence=ISO]
            [GO:0005758 "mitochondrial intermembrane space" evidence=ISO]
            [GO:0005886 "plasma membrane" evidence=ISO] [GO:0006401 "RNA
            catabolic process" evidence=ISO] [GO:0006402 "mRNA catabolic
            process" evidence=ISO] [GO:0008266 "poly(U) RNA binding"
            evidence=ISO] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
            [GO:0034599 "cellular response to oxidative stress" evidence=ISO]
            [GO:0035198 "miRNA binding" evidence=ISO] [GO:0035458 "cellular
            response to interferon-beta" evidence=ISO] [GO:0035927 "RNA import
            into mitochondrion" evidence=ISO] [GO:0035928 "rRNA import into
            mitochondrion" evidence=ISO] [GO:0043457 "regulation of cellular
            respiration" evidence=ISO] [GO:0043631 "RNA polyadenylation"
            evidence=ISO] [GO:0045025 "mitochondrial degradosome" evidence=ISO]
            [GO:0045926 "negative regulation of growth" evidence=ISO]
            [GO:0051260 "protein homooligomerization" evidence=ISO] [GO:0061014
            "positive regulation of mRNA catabolic process" evidence=ISO]
            [GO:0070207 "protein homotrimerization" evidence=ISO] [GO:0070584
            "mitochondrion morphogenesis" evidence=ISO] [GO:0071042 "nuclear
            polyadenylation-dependent mRNA catabolic process" evidence=ISO]
            [GO:0071850 "mitotic cell cycle arrest" evidence=ISO] [GO:0097222
            "mitochondrial mRNA polyadenylation" evidence=ISO] [GO:2000627
            "positive regulation of miRNA catabolic process" evidence=ISO]
            [GO:2000772 "regulation of cellular senescence" evidence=ISO]
            InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
            InterPro:IPR012162 Pfam:PF00013 Pfam:PF00575 PROSITE:PS50084
            PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847
            Pfam:PF01138 RGD:1307987 GO:GO:0005886 GO:GO:0008266 GO:GO:0005758
            GO:GO:0034599 GO:GO:0006378 GO:GO:0045926 GO:GO:0035198
            GO:GO:0070207 GO:GO:0035458 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0034046
            GO:GO:0070584 GO:GO:0000958 GO:GO:0071850 GO:GO:0000175
            GO:GO:0043457 GO:GO:0071042 InterPro:IPR022967 SMART:SM00316
            GO:GO:0045025 Pfam:PF03725 SUPFAM:SSF55666 GO:GO:0061014
            GO:GO:2000772 HOGENOM:HOG000218327 GO:GO:0004654 PANTHER:PTHR11252
            HOVERGEN:HBG053625 GO:GO:0000965 GO:GO:0000964 GO:GO:2000627
            GO:GO:0000962 GO:GO:0035928 UniGene:Rn.23118 EMBL:BC092603
            IPI:IPI00777805 ProteinModelPortal:Q562B9 STRING:Q562B9
            PRIDE:Q562B9 UCSC:RGD:1307987 InParanoid:Q562B9 ArrayExpress:Q562B9
            Genevestigator:Q562B9 Uniprot:Q562B9
        Length = 452

 Score = 821 (294.1 bits), Expect = 7.4e-82, P = 7.4e-82
 Identities = 175/400 (43%), Positives = 248/400 (62%)

Query:   370 RVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLV----G 425
             R DGR L  +R I CE      LHGS+LF RG TQVLCTVT  +   + + + ++    G
Sbjct:    26 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAING 85

Query:   426 PPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSE 485
                K FMLHY FPP+  NE GK  G+NRRE+GHG LAEKAL  V+P   DFP+T+RV SE
Sbjct:    86 VKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPVIP--KDFPFTIRVTSE 143

Query:   486 VMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILG 545
             V+ S+GS+SMA+ CGGS+ALMDAG+P+   VAGV+VGLV++ +P  GEI+DYR+LTDILG
Sbjct:   144 VLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKSNPEKGEIEDYRLLTDILG 203

Query:   546 LEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISA 605
             +ED+ GDMDFKIAGT  G+TA+Q DIK  G+P+ II E ++ A   + +IL  M + IS 
Sbjct:   204 IEDYNGDMDFKIAGTNKGITALQADIKLPGVPVKIIMEAIQQATVAKREILQTMSKTISK 263

Query:   606 PRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS-VSDGTLTVVAKNRS 664
             PR     N P + T+K       + IGP G   +K++ ETG  IS V + T ++ A   +
Sbjct:   264 PRASRKENGPVVETVKVPLSKRAKFIGPGGYHLKKLQAETGVTISQVDEETFSIFAPTPT 323

Query:   665 VMEKVLEKVDFIIG----REIEVGGIYKGVVTSVKEYGAFVEFNGGQQG-LLHVSELSHE 719
              M +  + +  I      +++E G +Y   +T +++ G  V+        LLH S+L   
Sbjct:   324 AMHEARDFITEICRDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTAVLLHNSQLDQR 383

Query:   720 PVSRVSDV-VSVGQQLSLRCIGQD-VRGNIKLSLKAV-SP 756
              +   + + + VGQ++ ++  G+D   G ++LS K + SP
Sbjct:   384 KIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVLQSP 423


>UNIPROTKB|I3LEL9 [details] [associations]
            symbol:LOC100737729 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0006402 "mRNA catabolic process" evidence=IEA]
            [GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR012162 InterPro:IPR001247 InterPro:IPR015847
            Pfam:PF01138 GO:GO:0003723 GO:GO:0006402 InterPro:IPR020568
            SUPFAM:SSF54211 Pfam:PF03725 SUPFAM:SSF55666 GO:GO:0004654
            PANTHER:PTHR11252 GeneTree:ENSGT00390000014001 EMBL:FP236371
            Ensembl:ENSSSCT00000024635 OMA:RHIMVET Uniprot:I3LEL9
        Length = 242

 Score = 365 (133.5 bits), Expect = 1.9e-32, P = 1.9e-32
 Identities = 73/190 (38%), Positives = 114/190 (60%)

Query:    64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
             ++GSR + + +GK+ARFA+G+ V+   +T V+ T  S    S   F+PL VDY++K  A 
Sbjct:    50 DLGSRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAA 109

Query:   124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
             G IP  Y+RRE    ++E+L  R+IDR IRPLFPAG++++ Q++ ++L+ DG  +PD++A
Sbjct:   110 GRIPTNYLRREIGSSDKEILTSRVIDRSIRPLFPAGYFYDTQILCNLLAVDGVNEPDVLA 169

Query:   184 ANATSAALMLSDXXXXXXXXXXXXXXXXXQFIVNPTMDELSLSDLNLVYA-CTREKTLMI 242
              N  S AL LSD                 + +VNPT  E+S S LNLV     + + L +
Sbjct:   170 INGASVALSLSDIPWNGPIGAVRIGMIDGECVVNPTRKEMSSSTLNLVVTGAPKSQILPL 229

Query:   243 DVQAREISEK 252
             +V A  + ++
Sbjct:   230 EVSAARLLQQ 239


>UNIPROTKB|H7BXF6 [details] [associations]
            symbol:PNPT1 "Polyribonucleotide nucleotidyltransferase 1,
            mitochondrial" species:9606 "Homo sapiens" [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0004654 "polyribonucleotide
            nucleotidyltransferase activity" evidence=IEA] [GO:0006402 "mRNA
            catabolic process" evidence=IEA] InterPro:IPR012162
            InterPro:IPR001247 Pfam:PF01138 GO:GO:0003723 GO:GO:0006402
            InterPro:IPR020568 SUPFAM:SSF54211 EMBL:AC015982 GO:GO:0004654
            PANTHER:PTHR11252 HGNC:HGNC:23166 ProteinModelPortal:H7BXF6
            SMR:H7BXF6 PRIDE:H7BXF6 Ensembl:ENST00000260604 Bgee:H7BXF6
            Uniprot:H7BXF6
        Length = 179

 Score = 298 (110.0 bits), Expect = 3.0e-25, P = 3.0e-25
 Identities = 54/122 (44%), Positives = 84/122 (68%)

Query:    64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
             ++G+R + + +GK+ARFA+G+ V+   +T V+ T  S    S   F+PL VDY++K  A 
Sbjct:    50 DLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAA 109

Query:   124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
             G IP  Y+RRE    ++E+L  RIIDR IRPLFPAG++++ QV+ ++L+ DG  +PD++A
Sbjct:   110 GRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLA 169

Query:   184 AN 185
              N
Sbjct:   170 IN 171


>UNIPROTKB|F1SQL0 [details] [associations]
            symbol:PNPT1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0006402 "mRNA catabolic process" evidence=IEA]
            [GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
            InterPro:IPR012162 Pfam:PF00013 Pfam:PF00575 PROSITE:PS50084
            PROSITE:PS50126 SMART:SM00322 InterPro:IPR015847 GO:GO:0003723
            GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR022967 SMART:SM00316 SUPFAM:SSF55666 GO:GO:0004654
            PANTHER:PTHR11252 GeneTree:ENSGT00390000014001 EMBL:FP236371
            Ensembl:ENSSSCT00000009196 OMA:ITEIRNC Uniprot:F1SQL0
        Length = 250

 Score = 298 (110.0 bits), Expect = 3.0e-25, P = 3.0e-25
 Identities = 71/221 (32%), Positives = 119/221 (53%)

Query:   545 GLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREIS 604
             G+ED+ GDMDFKIAGT  G+TA+Q DIK  GIP+ I+ E ++ A   + +IL  M + I 
Sbjct:     1 GIEDYHGDMDFKIAGTAKGITALQADIKLPGIPIKIVMEAIQQASVAKKEILQIMNKTIP 60

Query:   605 APRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS-VSDGTLTVVAKNR 663
              PR     N P + T++       + +GP G   +K++ ETG  IS V + T ++ A   
Sbjct:    61 KPRASRKENGPVVETVQVPLSKRAKFVGPGGYHLKKLQAETGVTISQVDEETFSIFAPTP 120

Query:   664 SVMEKVLEKVDFIIG----REIEVGGIYKGVVTSVKEYGAFVEFNGGQQG-LLHVSELSH 718
             S M +  + +  I      +++E G +Y   +T +++ G  V+        LLH ++L  
Sbjct:   121 SAMHEAKDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTAVLLHNTQLDQ 180

Query:   719 EPVSRVSDV-VSVGQQLSLRCIGQD-VRGNIKLSLKAV-SP 756
               +   + + + VGQ++ ++  G+D   G ++LS K + SP
Sbjct:   181 RKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVLQSP 221


>CGD|CAL0002905 [details] [associations]
            symbol:orf19.4582 species:5476 "Candida albicans" [GO:0000177
            "cytoplasmic exosome (RNase complex)" evidence=IEA] [GO:0000176
            "nuclear exosome (RNase complex)" evidence=IEA] [GO:0034473 "U1
            snRNA 3'-end processing" evidence=IEA] [GO:0070478
            "nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
            nonsense-mediated decay" evidence=IEA] [GO:0016075 "rRNA catabolic
            process" evidence=IEA] [GO:0034476 "U5 snRNA 3'-end processing"
            evidence=IEA] [GO:0071028 "nuclear mRNA surveillance" evidence=IEA]
            [GO:0000467 "exonucleolytic trimming to generate mature 3'-end of
            5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
            LSU-rRNA)" evidence=IEA] [GO:0071039 "nuclear
            polyadenylation-dependent CUT catabolic process" evidence=IEA]
            [GO:0071051 "polyadenylation-dependent snoRNA 3'-end processing"
            evidence=IEA] [GO:0034475 "U4 snRNA 3'-end processing"
            evidence=IEA] [GO:0071038 "nuclear polyadenylation-dependent tRNA
            catabolic process" evidence=IEA] InterPro:IPR001247 CGD:CAL0002905
            InterPro:IPR015847 Pfam:PF01138 EMBL:AACQ01000005 EMBL:AACQ01000006
            InterPro:IPR020568 SUPFAM:SSF54211 KO:K11600 eggNOG:COG0689
            Pfam:PF03725 SUPFAM:SSF55666 RefSeq:XP_722654.1 RefSeq:XP_722799.1
            ProteinModelPortal:Q5AMR4 STRING:Q5AMR4 GeneID:3635514
            GeneID:3635642 KEGG:cal:CaO19.12051 KEGG:cal:CaO19.4582
            Uniprot:Q5AMR4
        Length = 240

 Score = 187 (70.9 bits), Expect = 2.2e-13, P = 2.2e-13
 Identities = 73/240 (30%), Positives = 112/240 (46%)

Query:   367 EGVRVDGRQLDEVRPIYCESGNLP-ILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVG 425
             EG+R+DGR+ +E+R   C     P    GSS   +G+T+V+CTV    P E   L S   
Sbjct:     7 EGLRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQ--GPIEPA-LRSQQH 63

Query:   426 PPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT-VRVNS 484
                    ++ +   F   E  KR    RR V   T  EK     +   N +P T + +N 
Sbjct:    64 SERANIEVNLNIASFSTFERKKRSRNERRLVELKTTLEKTFEESVMI-NLYPRTNIVINV 122

Query:   485 EVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDIL 544
             +V+  DG    A +   ++AL+DAGI + ++V+GVS GL  +  P          L D+ 
Sbjct:   123 QVLCQDGGMLAAVINSITLALIDAGISMYDYVSGVSCGLYDQT-P----------LLDVN 171

Query:   545 GLEDHLGDMDFKIAGTRIGVTA-IQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREI 603
              LE+H  DM     G  IG +  + L +    +PLD +   L     G  +I + M++E+
Sbjct:   172 NLEEH--DMSCLTVGV-IGKSEKLALMLLEDKMPLDRLESVLSIGIAGSHKIRELMDQEV 228


>UNIPROTKB|H7C3C5 [details] [associations]
            symbol:PNPT1 "Polyribonucleotide nucleotidyltransferase 1,
            mitochondrial" species:9606 "Homo sapiens" [GO:0000175
            "3'-5'-exoribonuclease activity" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0004654 "polyribonucleotide
            nucleotidyltransferase activity" evidence=IEA] [GO:0006396 "RNA
            processing" evidence=IEA] [GO:0006402 "mRNA catabolic process"
            evidence=IEA] InterPro:IPR012162 InterPro:IPR015848 Pfam:PF03726
            InterPro:IPR001247 Pfam:PF01138 GO:GO:0003723 GO:GO:0006396
            GO:GO:0006402 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
            EMBL:AC015982 GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252
            SUPFAM:SSF46915 HGNC:HGNC:23166 ProteinModelPortal:H7C3C5
            Ensembl:ENST00000415489 Uniprot:H7C3C5
        Length = 139

 Score = 160 (61.4 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 40/117 (34%), Positives = 58/117 (49%)

Query:   323 EALDKIGQDVKKALEEECDEESLQVLPKAVDTXXXXXXXXXXXAEGVRVDGRQLDEVRPI 382
             EA++KI  D ++ L+E+  E     + ++ +             E  R DGR L  +R +
Sbjct:     3 EAVNKIRLDTEEQLKEKFPEADPYEIIESFNVVAKEVFRSIVLNEYKRCDGRDLTSLRNV 62

Query:   383 YCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLV----GPPTKRFMLHY 435
              CE      LHGS+LF RG TQVLCTVT  +     + + ++    G   K FMLHY
Sbjct:    63 SCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAINGIKDKNFMLHY 119


>UNIPROTKB|Q724J5 [details] [associations]
            symbol:LMOf2365_0229 "RNA-binding protein" species:265669
            "Listeria monocytogenes serotype 4b str. F2365" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR003029 Pfam:PF00575
            PROSITE:PS50126 GO:GO:0003723 EMBL:AE017262
            GenomeReviews:AE017262_GR Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 eggNOG:COG1098
            HOGENOM:HOG000217052 RefSeq:YP_012839.1 ProteinModelPortal:Q724J5
            STRING:Q724J5 GeneID:2797347 KEGG:lmf:LMOf2365_0229 PATRIC:20321637
            KO:K07571 OMA:TGITHFG ProtClustDB:PRK08582 Uniprot:Q724J5
        Length = 142

 Score = 158 (60.7 bits), Expect = 2.8e-10, P = 2.8e-10
 Identities = 33/85 (38%), Positives = 54/85 (63%)

Query:   681 IEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRC-- 738
             IEVG   +G VT +  +GAFVE  GG+ GL+H+SE++   V  ++D+++VG +++++   
Sbjct:     3 IEVGNKLQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVKDINDILTVGDEVTVKVMN 62

Query:   739 IGQDVRGNIKLSLKAVSPRPEADVK 763
             IG D  G I LS++    RP+   K
Sbjct:    63 IGDD--GKIGLSIRKAVDRPDRPEK 85


>TAIR|locus:2076710 [details] [associations]
            symbol:RRP41 "AT3G61620" species:3702 "Arabidopsis
            thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
            evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
            evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA]
            InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005829
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0004527 EMBL:AL132959
            InterPro:IPR020568 SUPFAM:SSF54211 KO:K11600 eggNOG:COG0689
            HOGENOM:HOG000229515 OMA:DVFIEVL Pfam:PF03725 SUPFAM:SSF55666
            HSSP:P50597 EMBL:AF191741 EMBL:BT005485 EMBL:AK118846
            IPI:IPI00547870 PIR:T47954 RefSeq:NP_001118878.1 RefSeq:NP_191721.1
            UniGene:At.20638 ProteinModelPortal:Q9SP08 SMR:Q9SP08 IntAct:Q9SP08
            STRING:Q9SP08 PaxDb:Q9SP08 PRIDE:Q9SP08 DNASU:825335
            EnsemblPlants:AT3G61620.1 EnsemblPlants:AT3G61620.2 GeneID:825335
            KEGG:ath:AT3G61620 TAIR:At3g61620 InParanoid:Q9SP08
            PhylomeDB:Q9SP08 ProtClustDB:CLSN2685258 ArrayExpress:Q9SP08
            Genevestigator:Q9SP08 Uniprot:Q9SP08
        Length = 241

 Score = 162 (62.1 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 62/246 (25%), Positives = 112/246 (45%)

Query:   367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
             EG+R+DGR+ +E+R I  E G +    GS++F  G+T+V+  V    P E Q        
Sbjct:     7 EGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVY--GPREIQNKSQQKKN 64

Query:   427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT-VRVNSE 485
                  +  YS   F   +  +R   +RR      +  + + A +  E   P++ + +  +
Sbjct:    65 DHAVVLCEYSMAQFSTGD-RRRQKFDRRSTELSLVIRQTMEACILTEL-MPHSQIDIFLQ 122

Query:   486 VMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILG 545
             V+ +DG T  A +   ++AL DAGIP+++     S G ++   P          L D+  
Sbjct:   123 VLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNST-P----------LLDLNY 171

Query:   546 LEDHLGDMDFKIAGT-RIG-VTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREI 603
             +ED  G  D  +    ++  V+ +Q+D K   +P++        A +G   I + + RE+
Sbjct:   172 VEDSAGGADVTVGILPKLDKVSLLQMDAK---LPMETFETVFALASEGCKAIAERI-REV 227

Query:   604 SAPRTQ 609
                 T+
Sbjct:   228 LQENTK 233


>UNIPROTKB|Q71X59 [details] [associations]
            symbol:LMOf2365_2340 "S1 RNA binding domain protein"
            species:265669 "Listeria monocytogenes serotype 4b str. F2365"
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000110
            InterPro:IPR003029 Pfam:PF00575 PRINTS:PR00681 PROSITE:PS50126
            GO:GO:0006412 GO:GO:0003723 GO:GO:0005840 GO:GO:0003735
            EMBL:AE017262 GenomeReviews:AE017262_GR Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
            RefSeq:YP_014929.1 ProteinModelPortal:Q71X59 STRING:Q71X59
            GeneID:2799400 KEGG:lmf:LMOf2365_2340 PATRIC:20326043
            eggNOG:COG1098 HOGENOM:HOG000217052 KO:K07570 OMA:KSIHDIA
            ProtClustDB:PRK08059 Uniprot:Q71X59
        Length = 117

 Score = 143 (55.4 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 27/79 (34%), Positives = 47/79 (59%)

Query:   682 EVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQ 741
             +VG +  G +  ++ YGAFV  +   QGL+H+SE++H  V  + D + VGQ++ ++ +  
Sbjct:     5 KVGDVVSGKIAGIQSYGAFVALDNSTQGLVHISEITHGFVKDIHDFLEVGQEVKVKILDI 64

Query:   742 DVRGN-IKLSLKAVSPRPE 759
             D   N I LS++A    P+
Sbjct:    65 DEEKNKISLSIRATEEAPK 83


>UNIPROTKB|Q81VX9 [details] [associations]
            symbol:BAS0060 "S1 RNA binding domain protein" species:1392
            "Bacillus anthracis" [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126 EMBL:AE016879
            EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000217052
            KO:K07571 OMA:TGITHFG ProtClustDB:PRK08582 RefSeq:NP_842629.1
            RefSeq:YP_016663.1 RefSeq:YP_026347.1 ProteinModelPortal:Q81VX9
            IntAct:Q81VX9 DNASU:1086747 EnsemblBacteria:EBBACT00000012087
            EnsemblBacteria:EBBACT00000017904 EnsemblBacteria:EBBACT00000019266
            GeneID:1086747 GeneID:2814985 GeneID:2852426 KEGG:ban:BA_0060
            KEGG:bar:GBAA_0060 KEGG:bat:BAS0060
            BioCyc:BANT260799:GJAJ-67-MONOMER BioCyc:BANT261594:GJ7F-69-MONOMER
            Uniprot:Q81VX9
        Length = 160

 Score = 143 (55.4 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 30/81 (37%), Positives = 47/81 (58%)

Query:   681 IEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIG 740
             IEVG   +G VT +  +GAFVE   G  GL+H+SE++   V  ++D + VG Q+ ++ I 
Sbjct:     3 IEVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVIN 62

Query:   741 QDVRGNIKLSLKAVSPRPEAD 761
              +  G I LS+K    R + +
Sbjct:    63 VEKDGKIGLSIKKAKEREKTE 83


>TIGR_CMR|BA_0060 [details] [associations]
            symbol:BA_0060 "S1 RNA binding domain protein"
            species:198094 "Bacillus anthracis str. Ames" [GO:0003723 "RNA
            binding" evidence=ISS] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126
            EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000217052
            KO:K07571 OMA:TGITHFG ProtClustDB:PRK08582 RefSeq:NP_842629.1
            RefSeq:YP_016663.1 RefSeq:YP_026347.1 ProteinModelPortal:Q81VX9
            IntAct:Q81VX9 DNASU:1086747 EnsemblBacteria:EBBACT00000012087
            EnsemblBacteria:EBBACT00000017904 EnsemblBacteria:EBBACT00000019266
            GeneID:1086747 GeneID:2814985 GeneID:2852426 KEGG:ban:BA_0060
            KEGG:bar:GBAA_0060 KEGG:bat:BAS0060
            BioCyc:BANT260799:GJAJ-67-MONOMER BioCyc:BANT261594:GJ7F-69-MONOMER
            Uniprot:Q81VX9
        Length = 160

 Score = 143 (55.4 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 30/81 (37%), Positives = 47/81 (58%)

Query:   681 IEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIG 740
             IEVG   +G VT +  +GAFVE   G  GL+H+SE++   V  ++D + VG Q+ ++ I 
Sbjct:     3 IEVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVIN 62

Query:   741 QDVRGNIKLSLKAVSPRPEAD 761
              +  G I LS+K    R + +
Sbjct:    63 VEKDGKIGLSIKKAKEREKTE 83


>MGI|MGI:1923576 [details] [associations]
            symbol:Exosc4 "exosome component 4" species:10090 "Mus
            musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
            [GO:0000460 "maturation of 5.8S rRNA" evidence=ISO] [GO:0000956
            "nuclear-transcribed mRNA catabolic process" evidence=ISO]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006364 "rRNA processing"
            evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=ISO]
            [GO:0030307 "positive regulation of cell growth" evidence=ISO]
            [GO:0035327 "transcriptionally active chromatin" evidence=ISO]
            [GO:0045006 "DNA deamination" evidence=ISO] [GO:0051607 "defense
            response to virus" evidence=ISO] [GO:0071028 "nuclear mRNA
            surveillance" evidence=ISO] [GO:0071044 "histone mRNA catabolic
            process" evidence=ISO] InterPro:IPR001247 InterPro:IPR015847
            MGI:MGI:1923576 Pfam:PF01138 GO:GO:0005737 GO:GO:0030307
            GO:GO:0005730 GO:GO:0051607 GO:GO:0017091 GO:GO:0000178
            InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0071044
            KO:K11600 GO:GO:0000460 GO:GO:0045006 CTD:54512 eggNOG:COG0689
            GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
            HOVERGEN:HBG051519 OMA:DVFIEVL OrthoDB:EOG4PC9T0 GO:GO:0071028
            Pfam:PF03725 SUPFAM:SSF55666 EMBL:BC012277 IPI:IPI00310857
            RefSeq:NP_780608.1 UniGene:Mm.322752 ProteinModelPortal:Q921I9
            SMR:Q921I9 STRING:Q921I9 PhosphoSite:Q921I9 PaxDb:Q921I9
            PRIDE:Q921I9 Ensembl:ENSMUST00000059045 GeneID:109075
            KEGG:mmu:109075 InParanoid:Q921I9 ChiTaRS:EXOSC4 NextBio:361620
            Bgee:Q921I9 CleanEx:MM_EXOSC4 Genevestigator:Q921I9
            GermOnline:ENSMUSG00000034259 Uniprot:Q921I9
        Length = 245

 Score = 157 (60.3 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 63/242 (26%), Positives = 101/242 (41%)

Query:   367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
             +G R+DGR+  E+R I    G      GS+   +G+T+ L  V    P E +   S   P
Sbjct:    10 QGYRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY--GPHEIRGSRSRALP 67

Query:   427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLA----EKALLAVLPPENDFPYTVRV 482
                     YS   F   E  +R   +R+    G       E A+L  L P +     V  
Sbjct:    68 DRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYV-- 125

Query:   483 NSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTD 542
               +V+ +DG T  A V   ++A+MDAGIP+++ V   S G V           D   L D
Sbjct:   126 --QVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFV-----------DGTALAD 172

Query:   543 ILGLEDHLGDMDFKIAGTRIG--VTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
             +  +E+  G     +A       +  +++D +     L+ + E    A +G   +LD + 
Sbjct:   173 LSHVEEAAGGPQLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARGVHTLLDLVV 232

Query:   601 RE 602
             R+
Sbjct:   233 RQ 234


>RGD|1310986 [details] [associations]
            symbol:Exosc4 "exosome component 4" species:10116 "Rattus
            norvegicus" [GO:0000178 "exosome (RNase complex)" evidence=IEA;ISO]
            [GO:0000460 "maturation of 5.8S rRNA" evidence=IEA;ISO] [GO:0000956
            "nuclear-transcribed mRNA catabolic process" evidence=ISO]
            [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
            evidence=ISO] [GO:0017091 "AU-rich element binding"
            evidence=IEA;ISO] [GO:0030307 "positive regulation of cell growth"
            evidence=IEA;ISO] [GO:0035327 "transcriptionally active chromatin"
            evidence=IEA;ISO] [GO:0045006 "DNA deamination" evidence=IEA;ISO]
            [GO:0051607 "defense response to virus" evidence=IEA;ISO]
            [GO:0071028 "nuclear mRNA surveillance" evidence=IEA;ISO]
            [GO:0071044 "histone mRNA catabolic process" evidence=IEA;ISO]
            [GO:0004532 "exoribonuclease activity" evidence=ISO]
            InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 RGD:1310986
            GO:GO:0005634 GO:GO:0030307 GO:GO:0051607 GO:GO:0017091
            GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327
            GO:GO:0071044 KO:K11600 GO:GO:0000460 GO:GO:0045006 CTD:54512
            GeneTree:ENSGT00550000074804 OrthoDB:EOG4PC9T0 GO:GO:0071028
            Pfam:PF03725 SUPFAM:SSF55666 IPI:IPI00366418 RefSeq:NP_001128332.1
            UniGene:Rn.28481 PRIDE:D4A4Y0 Ensembl:ENSRNOT00000016464
            GeneID:300045 KEGG:rno:300045 UCSC:RGD:1310986 NextBio:646189
            Uniprot:D4A4Y0
        Length = 245

 Score = 155 (59.6 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 49/162 (30%), Positives = 72/162 (44%)

Query:   367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
             +G R+DGR+  E+R I    G      GS+   +G+T+ L  V    P E +   S   P
Sbjct:    10 QGYRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY--GPHEIRGSRSRALP 67

Query:   427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLA----EKALLAVLPPENDFPYTVRV 482
                     YS   F   E  +R   +R+    G       E A+L  L P +     V  
Sbjct:    68 DRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYV-- 125

Query:   483 NSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLV 524
               +V+ +DG T  A V   ++A+MDAGIP+++ V   S G V
Sbjct:   126 --QVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFV 165


>TAIR|locus:2145860 [details] [associations]
            symbol:RPS1 "ribosomal protein S1" species:3702
            "Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS]
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0009507 "chloroplast"
            evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0016020
            "membrane" evidence=IDA] [GO:0009570 "chloroplast stroma"
            evidence=IDA] [GO:0006098 "pentose-phosphate shunt" evidence=RCA]
            [GO:0006364 "rRNA processing" evidence=RCA] [GO:0009773
            "photosynthetic electron transport in photosystem I" evidence=RCA]
            [GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
            "thylakoid membrane organization" evidence=RCA] [GO:0015995
            "chlorophyll biosynthetic process" evidence=RCA] [GO:0019288
            "isopentenyl diphosphate biosynthetic process,
            mevalonate-independent pathway" evidence=RCA] [GO:0034660 "ncRNA
            metabolic process" evidence=RCA] InterPro:IPR003029 Pfam:PF00575
            PROSITE:PS50126 EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0009570 GO:GO:0016020 GO:GO:0003723 GO:GO:0005840
            GO:GO:0009579 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR022967 SMART:SM00316 HSSP:P05055 KO:K02945
            EMBL:AF370232 EMBL:AY059914 EMBL:AY088230 EMBL:AY142540
            IPI:IPI00524792 RefSeq:NP_850903.1 UniGene:At.24389
            ProteinModelPortal:Q93VC7 SMR:Q93VC7 STRING:Q93VC7
            World-2DPAGE:0003:Q93VC7 PRIDE:Q93VC7 ProMEX:Q93VC7
            EnsemblPlants:AT5G30510.1 GeneID:833138 KEGG:ath:AT5G30510
            TAIR:At5g30510 HOGENOM:HOG000232530 InParanoid:Q93VC7 OMA:SEISHEH
            PhylomeDB:Q93VC7 ProtClustDB:CLSN2680335 ArrayExpress:Q93VC7
            Genevestigator:Q93VC7 Uniprot:Q93VC7
        Length = 416

 Score = 162 (62.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 33/80 (41%), Positives = 50/80 (62%)

Query:   680 EIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCI 739
             ++ +G +  GVV S+K YGAF++  GG  GLLHVS++SH+ VS ++ V+  G  L +  +
Sbjct:   260 QLGIGSVVLGVVQSLKPYGAFIDI-GGINGLLHVSQISHDRVSDIATVLQPGDTLKVMIL 318

Query:   740 GQDV-RGNIKLSLKAVSPRP 758
               D  RG + LS K + P P
Sbjct:   319 SHDRDRGRVSLSTKKLEPTP 338


>UNIPROTKB|O06147 [details] [associations]
            symbol:rpsA "30S ribosomal protein S1" species:1773
            "Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
            evidence=IDA] [GO:0040007 "growth" evidence=IMP] InterPro:IPR000110
            InterPro:IPR003029 Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681
            PROSITE:PS50126 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
            GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
            GenomeReviews:AL123456_GR GO:GO:0006412 EMBL:BX842577 GO:GO:0003723
            GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
            KO:K02945 PIR:D70559 RefSeq:NP_216146.1 RefSeq:NP_336122.1
            RefSeq:YP_006515019.1 ProteinModelPortal:O06147 SMR:O06147
            PhosSite:P12061590 PRIDE:O06147 EnsemblBacteria:EBMYCT00000003837
            EnsemblBacteria:EBMYCT00000072148 GeneID:13316409 GeneID:885188
            GeneID:924199 KEGG:mtc:MT1666 KEGG:mtu:Rv1630 KEGG:mtv:RVBD_1630
            PATRIC:18125426 TubercuList:Rv1630 HOGENOM:HOG000044053 OMA:WQQFART
            ProtClustDB:PRK07899 Uniprot:O06147
        Length = 481

 Score = 163 (62.4 bits), Expect = 2.1e-08, P = 2.1e-08
 Identities = 39/102 (38%), Positives = 60/102 (58%)

Query:   658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
             VV   R+ +E+   +V       ++ G I KGVV+S+  +GAFV+  GG  GL+HVSELS
Sbjct:   183 VVLSRRAWLEQTQSEVRSEFLNNLQKGTIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELS 241

Query:   718 HEPVSRVSDVVSVGQQLSLRCIGQDV-RGNIKLSLKAVSPRP 758
              + +   S+VV VG ++++  +  D+ R  + LSLKA    P
Sbjct:   242 WKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283


>UNIPROTKB|E2RIM3 [details] [associations]
            symbol:EXOSC4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0071044 "histone mRNA catabolic process"
            evidence=IEA] [GO:0071028 "nuclear mRNA surveillance" evidence=IEA]
            [GO:0051607 "defense response to virus" evidence=IEA] [GO:0045006
            "DNA deamination" evidence=IEA] [GO:0035327 "transcriptionally
            active chromatin" evidence=IEA] [GO:0030307 "positive regulation of
            cell growth" evidence=IEA] [GO:0017091 "AU-rich element binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000460
            "maturation of 5.8S rRNA" evidence=IEA] [GO:0000178 "exosome (RNase
            complex)" evidence=IEA] InterPro:IPR001247 InterPro:IPR015847
            Pfam:PF01138 GO:GO:0005634 GO:GO:0030307 GO:GO:0051607
            GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
            GO:GO:0035327 GO:GO:0071044 KO:K11600 GO:GO:0000460 GO:GO:0045006
            CTD:54512 GeneTree:ENSGT00550000074804 OMA:DVFIEVL GO:GO:0071028
            Pfam:PF03725 SUPFAM:SSF55666 EMBL:AAEX03008955 RefSeq:XP_539207.1
            Ensembl:ENSCAFT00000002371 GeneID:482086 KEGG:cfa:482086
            NextBio:20856762 Uniprot:E2RIM3
        Length = 245

 Score = 154 (59.3 bits), Expect = 2.7e-08, P = 2.7e-08
 Identities = 63/242 (26%), Positives = 103/242 (42%)

Query:   367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
             +G RVDGR+  E+R I    G      GS+   +G+T+ L  V    P E +   +   P
Sbjct:    10 QGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY--GPHEIRGSRARALP 67

Query:   427 PTKRFMLHYSFPPFCINEVGKRVGLNRR--EVG-H-GTLAEKALLAVLPPENDFPYTVRV 482
                     YS   F   E  +R   +R+  E+G H     E A+L  L P +     V  
Sbjct:    68 DRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQIDIYV-- 125

Query:   483 NSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTD 542
               +V+ +DG T  A V   ++A++DAGIP+++ V   S G V           D   L D
Sbjct:   126 --QVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV-----------DNTALAD 172

Query:   543 ILGLEDHLGDMDFKIAGTRIG--VTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
             +  +E+  G     +A       +  +++D +     L+ + E    A +    +LD + 
Sbjct:   173 LSHVEEAAGGPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAARAARDVHTVLDRVV 232

Query:   601 RE 602
             R+
Sbjct:   233 RQ 234


>TIGR_CMR|BA_1519 [details] [associations]
            symbol:BA_1519 "ribosomal protein S1" species:198094
            "Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
            of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
            InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
            PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 EMBL:AE016879
            EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
            GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
            HSSP:P05055 KO:K02945 HOGENOM:HOG000044053 ProtClustDB:PRK06676
            RefSeq:NP_843970.1 RefSeq:YP_018142.1 RefSeq:YP_027677.1
            ProteinModelPortal:Q81SX5 DNASU:1083667
            EnsemblBacteria:EBBACT00000012330 EnsemblBacteria:EBBACT00000016288
            EnsemblBacteria:EBBACT00000024070 GeneID:1083667 GeneID:2817299
            GeneID:2849711 KEGG:ban:BA_1519 KEGG:bar:GBAA_1519 KEGG:bat:BAS1408
            OMA:DMMEEIN BioCyc:BANT260799:GJAJ-1482-MONOMER
            BioCyc:BANT261594:GJ7F-1544-MONOMER Uniprot:Q81SX5
        Length = 382

 Score = 158 (60.7 bits), Expect = 4.7e-08, P = 4.7e-08
 Identities = 36/111 (32%), Positives = 64/111 (57%)

Query:   658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
             V+  +++V+E  L+         ++ G + +G V  + ++GAFV   GG  GL+H+S++S
Sbjct:   163 VILSHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQIS 221

Query:   718 HEPVSRVSDVVSVGQQLSLRCIGQDV-RGNIKLSLKAVSPRPEADVKGVVE 767
             HE V + S+V+  GQ++ ++ +  D     I LS+KA  P P  +V G V+
Sbjct:   222 HERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVGGEVK 272

 Score = 130 (50.8 bits), Expect = 5.6e-05, P = 5.6e-05
 Identities = 27/77 (35%), Positives = 49/77 (63%)

Query:   677 IGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSL 736
             +G E++ G I +GVV  +  +GAFVE   G +GL+HVS++++  V   ++V+ +GQ++ +
Sbjct:   267 VGGEVKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query:   737 RCIGQDV-RGNIKLSLK 752
             + +   V    I LS+K
Sbjct:   327 KVLEVHVAEKRISLSIK 343


>UNIPROTKB|Q7YRA3 [details] [associations]
            symbol:EXOSC4 "Exosome complex component RRP41"
            species:9913 "Bos taurus" [GO:0000178 "exosome (RNase complex)"
            evidence=ISS] [GO:0071044 "histone mRNA catabolic process"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0071028 "nuclear mRNA surveillance"
            evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
            [GO:0045006 "DNA deamination" evidence=IEA] [GO:0035327
            "transcriptionally active chromatin" evidence=IEA] [GO:0030307
            "positive regulation of cell growth" evidence=IEA] [GO:0017091
            "AU-rich element binding" evidence=IEA] [GO:0000460 "maturation of
            5.8S rRNA" evidence=IEA] [GO:0004527 "exonuclease activity"
            evidence=IEA] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
            GO:GO:0005737 GO:GO:0030307 GO:GO:0005730 GO:GO:0051607
            GO:GO:0017091 GO:GO:0004527 GO:GO:0090305 GO:GO:0000178
            InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0071044
            KO:K11600 GO:GO:0000460 GO:GO:0045006 EMBL:AJ518955 EMBL:BC109819
            IPI:IPI00697313 RefSeq:NP_001071554.1 UniGene:Bt.16597 HSSP:Q9UXC2
            ProteinModelPortal:Q7YRA3 SMR:Q7YRA3 STRING:Q7YRA3
            Ensembl:ENSBTAT00000019451 GeneID:618292 KEGG:bta:618292 CTD:54512
            eggNOG:COG0689 GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
            HOVERGEN:HBG051519 InParanoid:Q7YRA3 OMA:DVFIEVL OrthoDB:EOG4PC9T0
            NextBio:20901104 GO:GO:0071028 Pfam:PF03725 SUPFAM:SSF55666
            Uniprot:Q7YRA3
        Length = 245

 Score = 151 (58.2 bits), Expect = 6.2e-08, P = 6.2e-08
 Identities = 61/242 (25%), Positives = 100/242 (41%)

Query:   367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
             +G RVDGR+  E+R I    G      GS+   +G+T+ L  V    P E +   +   P
Sbjct:    10 QGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY--GPHEIRGSRARALP 67

Query:   427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLA----EKALLAVLPPENDFPYTVRV 482
                     YS   F   E  +R   +R+    G       E A+L  L P +     V  
Sbjct:    68 DRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYV-- 125

Query:   483 NSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTD 542
               +V+ +DG T  A V   ++A++DAGIP+++ V   S G V           D   L D
Sbjct:   126 --QVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV-----------DGTALAD 172

Query:   543 ILGLEDHLGDMDFKIAGTRIG--VTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
             +  +E+  G     +A       +  +++D +     L+ + E    A +    +LD + 
Sbjct:   173 LSHVEEAAGGPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAARASRDVHTVLDRVV 232

Query:   601 RE 602
             R+
Sbjct:   233 RQ 234


>UNIPROTKB|Q9NPD3 [details] [associations]
            symbol:EXOSC4 "Exosome complex component RRP41"
            species:9606 "Homo sapiens" [GO:0000175 "3'-5'-exoribonuclease
            activity" evidence=NAS] [GO:0005730 "nucleolus" evidence=NAS]
            [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0006364 "rRNA
            processing" evidence=NAS] [GO:0071044 "histone mRNA catabolic
            process" evidence=IMP] [GO:0000178 "exosome (RNase complex)"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0000460 "maturation of 5.8S rRNA" evidence=IMP] [GO:0045006
            "DNA deamination" evidence=IDA] [GO:0017091 "AU-rich element
            binding" evidence=IDA] [GO:0035327 "transcriptionally active
            chromatin" evidence=IMP] [GO:0004532 "exoribonuclease activity"
            evidence=IDA] [GO:0000956 "nuclear-transcribed mRNA catabolic
            process" evidence=IMP] [GO:0071028 "nuclear mRNA surveillance"
            evidence=IMP] [GO:0030307 "positive regulation of cell growth"
            evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0051607
            "defense response to virus" evidence=IMP] [GO:0000288
            "nuclear-transcribed mRNA catabolic process,
            deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
            evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
            [GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
            metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
            nuclear-transcribed mRNA catabolic process involved in
            deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
            Reactome:REACT_21257 InterPro:IPR001247 InterPro:IPR015847
            Pfam:PF01138 GO:GO:0005829 GO:GO:0030307 GO:GO:0005730
            GO:GO:0051607 GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568
            SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0071044 KO:K11600 GO:GO:0000460
            GO:GO:0000175 GO:GO:0043928 PDB:2NN6 PDBsum:2NN6 GO:GO:0045006
            CTD:54512 eggNOG:COG0689 HOGENOM:HOG000229515 HOVERGEN:HBG051519
            OMA:DVFIEVL OrthoDB:EOG4PC9T0 GO:GO:0071028 Pfam:PF03725
            SUPFAM:SSF55666 EMBL:AF281133 EMBL:AK000598 EMBL:AC109322
            EMBL:BC002777 IPI:IPI00745613 RefSeq:NP_061910.1 UniGene:Hs.632041
            ProteinModelPortal:Q9NPD3 SMR:Q9NPD3 IntAct:Q9NPD3 STRING:Q9NPD3
            PhosphoSite:Q9NPD3 DMDM:14285756 SWISS-2DPAGE:Q9NPD3 PaxDb:Q9NPD3
            PRIDE:Q9NPD3 DNASU:54512 Ensembl:ENST00000316052
            Ensembl:ENST00000568113 GeneID:54512 KEGG:hsa:54512 UCSC:uc003zau.3
            GeneCards:GC08P145133 HGNC:HGNC:18189 HPA:HPA024792 MIM:606491
            neXtProt:NX_Q9NPD3 PharmGKB:PA134867931 InParanoid:Q9NPD3
            PhylomeDB:Q9NPD3 EvolutionaryTrace:Q9NPD3 GenomeRNAi:54512
            NextBio:56896 ArrayExpress:Q9NPD3 Bgee:Q9NPD3 CleanEx:HS_EXOSC4
            Genevestigator:Q9NPD3 GermOnline:ENSG00000178896 Uniprot:Q9NPD3
        Length = 245

 Score = 150 (57.9 bits), Expect = 8.2e-08, P = 8.2e-08
 Identities = 48/162 (29%), Positives = 72/162 (44%)

Query:   367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
             +G RVDGR+  E+R I    G      GS+   +G+T+ L  V    P E +   +   P
Sbjct:    10 QGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY--GPHEIRGSRARALP 67

Query:   427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLA----EKALLAVLPPENDFPYTVRV 482
                     YS   F   E  +R   +R+    G       E A+L  L P +     V  
Sbjct:    68 DRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYV-- 125

Query:   483 NSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLV 524
               +V+ +DG T  A V   ++A++DAGIP+++ V   S G V
Sbjct:   126 --QVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV 165


>TIGR_CMR|GSU_2603 [details] [associations]
            symbol:GSU_2603 "ribosomal protein S1" species:243231
            "Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
            of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
            [GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000110
            InterPro:IPR003029 Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681
            PROSITE:PS50126 GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
            EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR022967 SMART:SM00316 HOGENOM:HOG000044052 KO:K02945
            ProtClustDB:PRK06299 TIGRFAMs:TIGR00717 RefSeq:NP_953648.2
            GeneID:2686316 KEGG:gsu:GSU2603 PATRIC:22028059
            BioCyc:GSUL243231:GH27-2582-MONOMER Uniprot:Q749Y9
        Length = 586

 Score = 141 (54.7 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
 Identities = 40/108 (37%), Positives = 56/108 (51%)

Query:   688 KGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIG-QDVRGN 746
             +G VTSV ++G F+E   G +GL+HVSELS E V+   D  SVG +L    +   DV   
Sbjct:   480 RGKVTSVTDFGVFLEIEEGIEGLVHVSELSREKVASPKDFASVGDELDAVVLSVDDVEKK 539

Query:   747 IKLSLKAVSPRPEADVKGVVEGSVPVNKQATDVWASV---GDVSNGQN 791
             I LS+KA+    E   K  +E  +    +AT    ++   G   NG N
Sbjct:   540 IALSVKALQAAAE---KAELESYMQDRGEATSNLGALLREGMRKNGDN 584

 Score = 136 (52.9 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
 Identities = 33/102 (32%), Positives = 57/102 (55%)

Query:   658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
             +V   R ++E+    V       +  G   +GVV ++ +YGAFV+  GG  GLLHV+++S
Sbjct:   191 IVLSRRVLLEEERAGVRTETLANLAEGQTREGVVKNITDYGAFVDI-GGVDGLLHVTDMS 249

Query:   718 HEPVSRVSDVVSVGQQLSLRCIGQDV-RGNIKLSLKAVSPRP 758
                +   S+++  G +LS++ +  D  +G I L LK ++P P
Sbjct:   250 WGRLGHPSEMLKPGDKLSVKILKYDQEKGKISLGLKQITPDP 291

 Score = 125 (49.1 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
 Identities = 40/122 (32%), Positives = 63/122 (51%)

Query:   677 IGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH-EPVSRVSDVVSVGQQLS 735
             + ++ +VG    G V S+ +YGAFV  + G +GL+HVSE+S  + +   SD+++VG ++ 
Sbjct:   295 VEQKFQVGDRVSGRVVSMTDYGAFVALDEGVEGLVHVSEMSWTKRLRHPSDLLTVGDEVE 354

Query:   736 LRCIGQDVRGN--IKLSLKAVSPRPEADVK-----GV-VEGSVPVNKQATDVWASVGDVS 787
                +G D  GN  I L LK     P   ++     G  +EG +   K  TD    +G V 
Sbjct:   355 TVVLGIDT-GNRRISLGLKQAQANPWTQLEEKYPVGTKLEGQI---KSITDFGVFIG-VD 409

Query:   788 NG 789
              G
Sbjct:   410 EG 411

 Score = 65 (27.9 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
 Identities = 21/51 (41%), Positives = 27/51 (52%)

Query:   911 GTKVAAKVYQVRARGLVLDLGGGIRGMYRFE--NNEK----KDFV-VGDEL 954
             GT+V  KV  V   G+ L++  GI G+      + EK    KDF  VGDEL
Sbjct:   476 GTRVRGKVTSVTDFGVFLEIEEGIEGLVHVSELSREKVASPKDFASVGDEL 526

 Score = 49 (22.3 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
 Identities = 15/62 (24%), Positives = 26/62 (41%)

Query:   320 ERGEALDKIGQDVKKALEEECDEESLQVLPKA-VDTXXXXXXXXXXXAEGVRVDGRQLDE 378
             E G    ++G +VK   E + +++   VL K   D             EG  V+G+   +
Sbjct:    82 EAGNLTVQVGDEVKALFERKENQKGYAVLSKRKADRLSAWDSIDAAGGEGGIVEGKITGK 141

Query:   379 VR 380
             V+
Sbjct:   142 VK 143

 Score = 37 (18.1 bits), Expect = 6.8e-05, Sum P(3) = 6.8e-05
 Identities = 7/28 (25%), Positives = 16/28 (57%)

Query:   910 LGTKVAAKVYQVRARGLVLDLGGGIRGM 937
             +GTK+  ++  +   G+ + +  GI G+
Sbjct:   388 VGTKLEGQIKSITDFGVFIGVDEGIDGL 415


>ZFIN|ZDB-GENE-050522-362 [details] [associations]
            symbol:exosc6 "exosome component 6" species:7955
            "Danio rerio" [GO:0000178 "exosome (RNase complex)"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0006364 "rRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] InterPro:IPR001247 Pfam:PF01138
            ZFIN:ZDB-GENE-050522-362 GO:GO:0005737 GO:GO:0005730 GO:GO:0003723
            GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364
            HSSP:Q9UXC2 eggNOG:COG0689 GeneTree:ENSGT00550000074804
            HOGENOM:HOG000229515 EMBL:BC065602 EMBL:BC095173 IPI:IPI00483784
            RefSeq:NP_001018322.1 UniGene:Dr.80144 ProteinModelPortal:Q6P0I8
            STRING:Q6P0I8 Ensembl:ENSDART00000052348 GeneID:326786
            KEGG:dre:326786 CTD:118460 HOVERGEN:HBG057826 InParanoid:Q6P0I8
            KO:K12587 OMA:GRLLCDF OrthoDB:EOG4D7Z6K NextBio:20809731
            Bgee:Q6P0I8 Uniprot:Q6P0I8
        Length = 271

 Score = 150 (57.9 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 52/172 (30%), Positives = 81/172 (47%)

Query:   367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
             +GVR +G    +VRP++   G +    GS+    G+T+++C+V    P E +R +     
Sbjct:    34 QGVRGNG----DVRPVFARCGLVSQAKGSAYIEAGNTKIICSVY--GPKETERRDE-TDM 86

Query:   427 PTKRFMLHYSFPPF-CINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT-VRVNS 484
              T R +  +   PF C+       G   R++   TL E     V    + +P + + VN 
Sbjct:    87 KTGRLVCDFRLAPFSCVKRGAWIQGSEERDLS-ATLMESLRPGVCL--HRYPRSQIDVNV 143

Query:   485 EVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSV---GLVSEVDPSTGE 533
              V+ +DGS     V   SMAL DAGI + + V G ++   G    VDPS  E
Sbjct:   144 MVLENDGSVLAHAVTCASMALADAGIEMYDIVLGCTLRQSGNACLVDPSYAE 195


>POMBASE|SPAC3G9.10c [details] [associations]
            symbol:rrp41 "exosomal 3'-to-5' phosphorolytic
            exoribonuclease Rrp41 (predicted)" species:4896
            "Schizosaccharomyces pombe" [GO:0000175 "3'-5'-exoribonuclease
            activity" evidence=ISO] [GO:0000176 "nuclear exosome (RNase
            complex)" evidence=ISO] [GO:0000177 "cytoplasmic exosome (RNase
            complex)" evidence=ISO] [GO:0000467 "exonucleolytic trimming to
            generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
            transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005829
            "cytosol" evidence=IDA] [GO:0034661 "ncRNA catabolic process"
            evidence=ISO] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
            [GO:0070478 "nuclear-transcribed mRNA catabolic process, 3'-5'
            exonucleolytic nonsense-mediated decay" evidence=ISO] [GO:0070481
            "nuclear-transcribed mRNA catabolic process, non-stop decay"
            evidence=ISO] [GO:0070651 "nonfunctional rRNA decay" evidence=ISO]
            [GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
            process" evidence=ISO] [GO:0071038 "nuclear
            polyadenylation-dependent tRNA catabolic process" evidence=ISO]
            [GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
            process" evidence=ISO] InterPro:IPR001247 InterPro:IPR015847
            PomBase:SPAC3G9.10c Pfam:PF01138 GO:GO:0005829 EMBL:CU329670
            GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0044732 GO:GO:0003723
            GO:GO:0071035 GO:GO:0071038 InterPro:IPR020568 SUPFAM:SSF54211
            KO:K11600 GO:GO:0000176 GO:GO:0000175 GO:GO:0000177 GO:GO:0000467
            GO:GO:0070651 GO:GO:0071042 GO:GO:0070478 GO:GO:0070481
            eggNOG:COG0689 HOGENOM:HOG000229515 Pfam:PF03725 SUPFAM:SSF55666
            EMBL:D89141 PIR:T11646 PIR:T11740 RefSeq:NP_594082.1
            ProteinModelPortal:O42872 IntAct:O42872 STRING:O42872
            EnsemblFungi:SPAC3G9.10c.1 GeneID:2543451 KEGG:spo:SPAC3G9.10c
            OMA:AIMPKTG OrthoDB:EOG45MRFG NextBio:20804464 Uniprot:O42872
        Length = 242

 Score = 147 (56.8 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 45/159 (28%), Positives = 77/159 (48%)

Query:   367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
             EG+R DGR+ DE+R   C  G  P  +GS+    G+T+VLC V    P+E   ++S    
Sbjct:    10 EGLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVD--GPSEPV-IKSKARA 66

Query:   427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT-VRVNSE 485
                   +  +   F   +V KR   +RR        +     ++  E  +P + + V   
Sbjct:    67 DRTFVNVEINIASFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTEL-YPRSQISVYLH 125

Query:   486 VMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLV 524
             V+  DG+   + +   ++AL+DAGIP+++ V   + G+V
Sbjct:   126 VLQDDGAVMASCINATTLALIDAGIPVKDFVCCSTAGIV 164


>UNIPROTKB|Q9KVD6 [details] [associations]
            symbol:rph "Ribonuclease PH" species:243277 "Vibrio
            cholerae O1 biovar El Tor str. N16961" [GO:0004540 "ribonuclease
            activity" evidence=ISS] [GO:0006401 "RNA catabolic process"
            evidence=ISS] [GO:0008033 "tRNA processing" evidence=ISS]
            InterPro:IPR002381 InterPro:IPR001247 InterPro:IPR015847
            Pfam:PF01138 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006401
            GO:GO:0008033 GO:GO:0000049 GO:GO:0004540 InterPro:IPR020568
            SUPFAM:SSF54211 eggNOG:COG0689 Pfam:PF03725 SUPFAM:SSF55666
            InterPro:IPR018336 PROSITE:PS01277 GO:GO:0004549 KO:K00989
            OMA:MLPRATG ProtClustDB:PRK00173 GO:GO:0009022 HAMAP:MF_00564
            TIGRFAMs:TIGR01966 PIR:D82350 RefSeq:NP_229867.2
            ProteinModelPortal:Q9KVD6 SMR:Q9KVD6 DNASU:2614709 GeneID:2614709
            KEGG:vch:VC0210 PATRIC:20079464 Uniprot:Q9KVD6
        Length = 238

 Score = 146 (56.5 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 69/247 (27%), Positives = 103/247 (41%)

Query:   369 VRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL--GAPAEAQRLESLVGP 426
             +R D R  D+VRPI           GS L   G+T+VLC  ++  G P        L G 
Sbjct:     1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVP------RWLKGQ 54

Query:   427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGT----LAEKALLAVLPPENDFPYTVRV 482
                     Y   P   +   +R   N ++ G       L  ++L AV+  E      + V
Sbjct:    55 GKGWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITV 114

Query:   483 NSEVMASDGSTSMATVCGGSMALMDAGI-----------PLQEHVAGVSVGLVSEVDPST 531
             + +V+ +DG T  A++ G S+AL DA             P++ HVA VSVG++ E     
Sbjct:   115 DCDVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGE----- 169

Query:   532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPL--DIICECLEHAH 589
                 D  +L D+  +ED   D D  +  T  G   I++     G P   + + E L  A 
Sbjct:   170 ----D--VLCDLEYVEDSAADTDMNVVMTEEG-KMIEIQGTAEGEPFSHEQLLELLAVAK 222

Query:   590 KGRLQIL 596
             KG   I+
Sbjct:   223 KGIADIV 229


>TIGR_CMR|VC_0210 [details] [associations]
            symbol:VC_0210 "ribonuclease PH" species:686 "Vibrio
            cholerae O1 biovar El Tor" [GO:0004540 "ribonuclease activity"
            evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
            [GO:0008033 "tRNA processing" evidence=ISS] InterPro:IPR002381
            InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 EMBL:AE003852
            GenomeReviews:AE003852_GR GO:GO:0006401 GO:GO:0008033 GO:GO:0000049
            GO:GO:0004540 InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
            Pfam:PF03725 SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277
            GO:GO:0004549 KO:K00989 OMA:MLPRATG ProtClustDB:PRK00173
            GO:GO:0009022 HAMAP:MF_00564 TIGRFAMs:TIGR01966 PIR:D82350
            RefSeq:NP_229867.2 ProteinModelPortal:Q9KVD6 SMR:Q9KVD6
            DNASU:2614709 GeneID:2614709 KEGG:vch:VC0210 PATRIC:20079464
            Uniprot:Q9KVD6
        Length = 238

 Score = 146 (56.5 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 69/247 (27%), Positives = 103/247 (41%)

Query:   369 VRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL--GAPAEAQRLESLVGP 426
             +R D R  D+VRPI           GS L   G+T+VLC  ++  G P        L G 
Sbjct:     1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVP------RWLKGQ 54

Query:   427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGT----LAEKALLAVLPPENDFPYTVRV 482
                     Y   P   +   +R   N ++ G       L  ++L AV+  E      + V
Sbjct:    55 GKGWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITV 114

Query:   483 NSEVMASDGSTSMATVCGGSMALMDAGI-----------PLQEHVAGVSVGLVSEVDPST 531
             + +V+ +DG T  A++ G S+AL DA             P++ HVA VSVG++ E     
Sbjct:   115 DCDVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGE----- 169

Query:   532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPL--DIICECLEHAH 589
                 D  +L D+  +ED   D D  +  T  G   I++     G P   + + E L  A 
Sbjct:   170 ----D--VLCDLEYVEDSAADTDMNVVMTEEG-KMIEIQGTAEGEPFSHEQLLELLAVAK 222

Query:   590 KGRLQIL 596
             KG   I+
Sbjct:   223 KGIADIV 229


>TAIR|locus:2124024 [details] [associations]
            symbol:RRP41L "AT4G27490" species:3702 "Arabidopsis
            thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
            evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISM;IDA] [GO:0006396 "RNA processing"
            evidence=ISS] [GO:0009909 "regulation of flower development"
            evidence=RCA] [GO:0016570 "histone modification" evidence=RCA]
            [GO:0034968 "histone lysine methylation" evidence=RCA] [GO:0048449
            "floral organ formation" evidence=RCA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0008408 "3'-5' exonuclease activity"
            evidence=IMP] [GO:0009845 "seed germination" evidence=IMP]
            [GO:0090351 "seedling development" evidence=IMP] InterPro:IPR001247
            InterPro:IPR015847 Pfam:PF01138 GO:GO:0005634 GO:GO:0005737
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009845 GO:GO:0008408
            InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
            HOGENOM:HOG000229515 Pfam:PF03725 SUPFAM:SSF55666 KO:K12587
            OMA:GRLLCDF EMBL:BT029998 EMBL:BT030054 IPI:IPI00544536
            RefSeq:NP_194479.2 UniGene:At.46035 ProteinModelPortal:A2RVK7
            SMR:A2RVK7 IntAct:A2RVK7 STRING:A2RVK7 PaxDb:A2RVK7 PRIDE:A2RVK7
            EnsemblPlants:AT4G27490.1 GeneID:828858 KEGG:ath:AT4G27490
            TAIR:At4g27490 InParanoid:A2RVK7 PhylomeDB:A2RVK7
            ProtClustDB:CLSN2680990 Genevestigator:A2RVK7 Uniprot:A2RVK7
        Length = 256

 Score = 146 (56.5 bits), Expect = 3.1e-07, P = 3.1e-07
 Identities = 51/168 (30%), Positives = 85/168 (50%)

Query:   370 RVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTK 429
             R DGR   + RP   ++G +    GS+    G+T+V+ +V  G P E+++  ++V     
Sbjct:    34 RPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSV-FG-PRESKK--AMVYSDVG 89

Query:   430 RFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT-VRVNSEVMA 488
             R   + S+  F    +G+  G + +E  + ++  KAL  V+  E  FP T V V + V+ 
Sbjct:    90 RLNCNVSYTNFASPTLGQ--GTDHKE--YSSMLHKALEGVIMMET-FPKTTVDVFALVLE 144

Query:   489 SDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSE---VDPSTGE 533
             S GS     +   S+AL DAGI + + +  VSV  + +   +DP T E
Sbjct:   145 SGGSDLSVLISCASLALADAGIMMYDLITAVSVSCIGKSLMIDPVTEE 192


>UNIPROTKB|F1RSL0 [details] [associations]
            symbol:EXOSC4 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0071044 "histone mRNA catabolic process" evidence=IEA]
            [GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0051607
            "defense response to virus" evidence=IEA] [GO:0045006 "DNA
            deamination" evidence=IEA] [GO:0035327 "transcriptionally active
            chromatin" evidence=IEA] [GO:0030307 "positive regulation of cell
            growth" evidence=IEA] [GO:0017091 "AU-rich element binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000460
            "maturation of 5.8S rRNA" evidence=IEA] [GO:0000178 "exosome (RNase
            complex)" evidence=IEA] InterPro:IPR001247 InterPro:IPR015847
            Pfam:PF01138 GO:GO:0005634 GO:GO:0030307 GO:GO:0051607
            GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
            GO:GO:0035327 GO:GO:0071044 KO:K11600 GO:GO:0000460 GO:GO:0045006
            GeneTree:ENSGT00550000074804 OMA:DVFIEVL GO:GO:0071028 Pfam:PF03725
            SUPFAM:SSF55666 EMBL:FP085471 RefSeq:XP_003125499.1
            UniGene:Ssc.8432 Ensembl:ENSSSCT00000006505 GeneID:100511875
            KEGG:ssc:100511875 Uniprot:F1RSL0
        Length = 245

 Score = 144 (55.7 bits), Expect = 4.3e-07, P = 4.3e-07
 Identities = 44/158 (27%), Positives = 70/158 (44%)

Query:   367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
             +G RVDGR+  E+R I    G      GS+   +G+T+ L  V    P E +   S   P
Sbjct:    10 QGYRVDGRRARELRKIQARMGVFAQADGSAYIEQGNTKALAVVY--GPHEIRGSRSRALP 67

Query:   427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEV 486
                     YS   F   E  +R   +R+    G    +A  A +  +      + +  +V
Sbjct:    68 DRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQAFEAAILTQLHPRSQIDIYVQV 127

Query:   487 MASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLV 524
             + +DG    A V   ++A++DAGIP+++ V   S G V
Sbjct:   128 LQADGGIYAACVNVATLAVLDAGIPMRDFVCACSAGFV 165


>TIGR_CMR|BA_4715 [details] [associations]
            symbol:BA_4715 "ribonuclease PH" species:198094 "Bacillus
            anthracis str. Ames" [GO:0004540 "ribonuclease activity"
            evidence=ISS] [GO:0008033 "tRNA processing" evidence=ISS]
            InterPro:IPR002381 InterPro:IPR001247 InterPro:IPR015847
            Pfam:PF01138 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
            GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0008033 GO:GO:0000049
            InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689 Pfam:PF03725
            SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277 GO:GO:0004549
            RefSeq:NP_846927.1 RefSeq:YP_021364.1 RefSeq:YP_030624.1 PDB:3DD6
            PDBsum:3DD6 ProteinModelPortal:Q81LA9 SMR:Q81LA9 IntAct:Q81LA9
            DNASU:1088544 EnsemblBacteria:EBBACT00000011295
            EnsemblBacteria:EBBACT00000015124 EnsemblBacteria:EBBACT00000023463
            GeneID:1088544 GeneID:2815981 GeneID:2851699 KEGG:ban:BA_4715
            KEGG:bar:GBAA_4715 KEGG:bat:BAS4377 HOGENOM:HOG000229516 KO:K00989
            OMA:MLPRATG ProtClustDB:PRK00173
            BioCyc:BANT260799:GJAJ-4434-MONOMER
            BioCyc:BANT261594:GJ7F-4584-MONOMER EvolutionaryTrace:Q81LA9
            GO:GO:0009022 HAMAP:MF_00564 TIGRFAMs:TIGR01966 Uniprot:Q81LA9
        Length = 245

 Score = 143 (55.4 bits), Expect = 5.7e-07, P = 5.7e-07
 Identities = 64/239 (26%), Positives = 110/239 (46%)

Query:   369 VRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPT 428
             +RVDGR+  E+R I+  +  L    GS L   GDT+V+C+ T+             G  T
Sbjct:     1 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60

Query:   429 KRF-MLHYSFPPFCINEVGK-RVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEV 486
               + M+  +     I E  K +V     E+    L  +AL AV+  E     TV ++ +V
Sbjct:    61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQR--LIGRALRAVVDLEALGERTVWIDCDV 118

Query:   487 MASDGSTSMATVCGGSMALMDAGIPL--QEHVAGVSVGLVSEVDPSTGEIKDYRILTDIL 544
             + +DG T  A++ G  +A++ A   L   E V+ + V        S G +++  ++ D+ 
Sbjct:   119 IQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAAT-SVGIVEEQGVVLDLN 177

Query:   545 GLEDHLGDMDFKIAGTRIG-VTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMERE 602
               ED   D+D  +  T  G    +Q   + A      + E L+ A +G  Q++D +++E
Sbjct:   178 YAEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLID-IQKE 235


>ASPGD|ASPL0000013004 [details] [associations]
            symbol:AN3812 species:162425 "Emericella nidulans"
            [GO:0034473 "U1 snRNA 3'-end processing" evidence=IEA] [GO:0070478
            "nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
            nonsense-mediated decay" evidence=IEA] [GO:0016075 "rRNA catabolic
            process" evidence=IEA] [GO:0071028 "nuclear mRNA surveillance"
            evidence=IEA] [GO:0034476 "U5 snRNA 3'-end processing"
            evidence=IEA] [GO:0000467 "exonucleolytic trimming to generate
            mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
            (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0071039 "nuclear
            polyadenylation-dependent CUT catabolic process" evidence=IEA]
            [GO:0071051 "polyadenylation-dependent snoRNA 3'-end processing"
            evidence=IEA] [GO:0034475 "U4 snRNA 3'-end processing"
            evidence=IEA] [GO:0071038 "nuclear polyadenylation-dependent tRNA
            catabolic process" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
            evidence=IEA] [GO:0000177 "cytoplasmic exosome (RNase complex)"
            evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
            evidence=IEA] InterPro:IPR001247 Pfam:PF01138 EMBL:BN001302
            EMBL:AACD01000061 GO:GO:0004519 InterPro:IPR020568 SUPFAM:SSF54211
            KO:K11600 eggNOG:COG0689 HOGENOM:HOG000229515 RefSeq:XP_661416.1
            ProteinModelPortal:Q5B6L8 STRING:Q5B6L8
            EnsemblFungi:CADANIAT00004900 GeneID:2873233 KEGG:ani:AN3812.2
            OMA:GCKQVRE OrthoDB:EOG4H1F52 Uniprot:Q5B6L8
        Length = 265

 Score = 146 (56.5 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
 Identities = 45/160 (28%), Positives = 81/160 (50%)

Query:   369 VRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPT 428
             +R+DGR+ +E+R +  +    P   GSS  + G+T +LC+V    PAE +R ++  G   
Sbjct:    14 LRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTTILCSVH--GPAEGRRGDATGGSAG 71

Query:   429 KR---FMLHYSFPPFCINEVGKRVGLNRREVGH-GTLAEKALLAVLPPENDFPY-TVRVN 483
                    +  +   F   +  +R G + R+ G   +    A  + L     +P+ T+ ++
Sbjct:    72 SSGAVVEVDVNIAGFASVDRKRRAGGSDRQSGRIASTLRSAFQSHLHTYL-YPHSTISIH 130

Query:   484 SEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGL 523
               V++SDGS   A V   ++AL+DAGIP+   + G + G+
Sbjct:   131 VSVLSSDGSVLAAAVNACTLALVDAGIPMPGLLCGCTAGM 170

 Score = 38 (18.4 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query:   794 LPMRKNETPGVNSSTSSTPAVL 815
             LP  + E P +  +T+S PAV+
Sbjct:   193 LP-EEQELPFLTVATTSAPAVM 213


>WB|WBGene00007201 [details] [associations]
            symbol:exos-4.1 species:6239 "Caenorhabditis elegans"
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0040010 "positive regulation of
            growth rate" evidence=IMP] [GO:0009792 "embryo development ending
            in birth or egg hatching" evidence=IMP] [GO:0008406 "gonad
            development" evidence=IMP] [GO:0010171 "body morphogenesis"
            evidence=IMP] [GO:0040018 "positive regulation of multicellular
            organism growth" evidence=IMP] InterPro:IPR001247
            InterPro:IPR015847 Pfam:PF01138 GO:GO:0009792 GO:GO:0005737
            GO:GO:0040007 GO:GO:0040010 GO:GO:0005730 GO:GO:0008406
            GO:GO:0002119 GO:GO:0010171 GO:GO:0040018 GO:GO:0003723
            GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364
            eggNOG:COG0689 GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
            OMA:DVFIEVL Pfam:PF03725 SUPFAM:SSF55666 EMBL:Z73422 PIR:B88880
            RefSeq:NP_001021274.1 ProteinModelPortal:Q17533 SMR:Q17533
            STRING:Q17533 PaxDb:Q17533 PRIDE:Q17533 EnsemblMetazoa:B0564.1a
            GeneID:13198805 KEGG:cel:CELE_B0564.1a CTD:13198805
            WormBase:B0564.1a InParanoid:Q17533 NextBio:900408
            ArrayExpress:Q17533 InterPro:IPR018336 PROSITE:PS01277
            Uniprot:Q17533
        Length = 240

 Score = 140 (54.3 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 49/158 (31%), Positives = 73/158 (46%)

Query:   368 GVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPP 427
             G R+DGR+  ++R I    G      GS     G+T+VLC V    P E +  + +    
Sbjct:     8 GFRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVY--GPYEGKSSKRIEDKC 65

Query:   428 TKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT-VRVNSEV 486
                 +  YS   F   E   R   +R+      L EKA  +V+  E  FP + + +  EV
Sbjct:    66 A--IVCQYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEA-FPRSQLDIFCEV 122

Query:   487 MASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLV 524
             +  DGS   A V   S+AL DAGIP++   +  + G+V
Sbjct:   123 IQGDGSNLAACVNATSLALADAGIPMKGIASAATCGVV 160


>UNIPROTKB|Q17533 [details] [associations]
            symbol:exos-4.1 "Putative exosome complex component RRP41"
            species:6239 "Caenorhabditis elegans" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
            GO:GO:0009792 GO:GO:0005737 GO:GO:0040007 GO:GO:0040010
            GO:GO:0005730 GO:GO:0008406 GO:GO:0002119 GO:GO:0010171
            GO:GO:0040018 GO:GO:0003723 GO:GO:0000178 InterPro:IPR020568
            SUPFAM:SSF54211 GO:GO:0006364 eggNOG:COG0689
            GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515 OMA:DVFIEVL
            Pfam:PF03725 SUPFAM:SSF55666 EMBL:Z73422 PIR:B88880
            RefSeq:NP_001021274.1 ProteinModelPortal:Q17533 SMR:Q17533
            STRING:Q17533 PaxDb:Q17533 PRIDE:Q17533 EnsemblMetazoa:B0564.1a
            GeneID:13198805 KEGG:cel:CELE_B0564.1a CTD:13198805
            WormBase:B0564.1a InParanoid:Q17533 NextBio:900408
            ArrayExpress:Q17533 InterPro:IPR018336 PROSITE:PS01277
            Uniprot:Q17533
        Length = 240

 Score = 140 (54.3 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 49/158 (31%), Positives = 73/158 (46%)

Query:   368 GVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPP 427
             G R+DGR+  ++R I    G      GS     G+T+VLC V    P E +  + +    
Sbjct:     8 GFRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVY--GPYEGKSSKRIEDKC 65

Query:   428 TKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT-VRVNSEV 486
                 +  YS   F   E   R   +R+      L EKA  +V+  E  FP + + +  EV
Sbjct:    66 A--IVCQYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEA-FPRSQLDIFCEV 122

Query:   487 MASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLV 524
             +  DGS   A V   S+AL DAGIP++   +  + G+V
Sbjct:   123 IQGDGSNLAACVNATSLALADAGIPMKGIASAATCGVV 160


>FB|FBgn0032487 [details] [associations]
            symbol:Ski6 "Ski6" species:7227 "Drosophila melanogaster"
            [GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS;IDA]
            [GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS]
            [GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISS]
            [GO:0035327 "transcriptionally active chromatin" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005652 "nuclear lamina"
            evidence=IDA] [GO:0010468 "regulation of gene expression"
            evidence=IMP] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
            GO:GO:0005737 GO:GO:0010468 InterPro:IPR020568 SUPFAM:SSF54211
            GO:GO:0035327 GO:GO:0005652 GO:GO:0000176 eggNOG:COG0689
            SUPFAM:SSF55666 EMBL:AY071632 ProteinModelPortal:Q8SYC8 SMR:Q8SYC8
            IntAct:Q8SYC8 STRING:Q8SYC8 PaxDb:Q8SYC8 PRIDE:Q8SYC8
            FlyBase:FBgn0032487 InParanoid:Q8SYC8 OrthoDB:EOG4Z08NJ
            ArrayExpress:Q8SYC8 Bgee:Q8SYC8 Uniprot:Q8SYC8
        Length = 246

 Score = 140 (54.3 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 46/166 (27%), Positives = 78/166 (46%)

Query:   367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
             +G+R+DGR+  E+R I C+ G      GS+   +G+T+VL  V     A+  + ES++  
Sbjct:    11 QGLRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGNQTESVIN- 69

Query:   427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT-VRVNSE 485
                     YS   F   E   R   +R+ +      ++AL A +  E  +P + + +  E
Sbjct:    70 ------CQYSQATFSTAERKNRPRGDRKSLEFKLYLQQALSAAIKSEL-YPRSQIDIYVE 122

Query:   486 VMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
             V+  DG+     +   ++AL+DAGI L E +   +  L     P T
Sbjct:   123 VLQDDGANYAVALNAATLALIDAGICLNEFIVACTASLSKSNIPLT 168


>TIGR_CMR|GSU_1200 [details] [associations]
            symbol:GSU_1200 "ribosomal protein S1" species:243231
            "Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
            of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
            [GO:0015935 "small ribosomal subunit" evidence=ISS]
            InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
            PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
            GO:GO:0003723 GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR
            GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR022967 SMART:SM00316 KO:K02945 HOGENOM:HOG000044053
            RefSeq:NP_952253.1 ProteinModelPortal:Q74DW5 GeneID:2685786
            KEGG:gsu:GSU1200 PATRIC:22025170 OMA:NEMRFTT ProtClustDB:PRK06676
            BioCyc:GSUL243231:GH27-1176-MONOMER Uniprot:Q74DW5
        Length = 402

 Score = 145 (56.1 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 50/187 (26%), Positives = 89/187 (47%)

Query:   585 LEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEE 644
             LE A++  + +  ++E+EI          + R A   Y   +LRR   P   + R++  +
Sbjct:   109 LEDAYRAGIPVEGNVEKEIKGGFEIKVGGTVR-AFCPYSQISLRRAANPAEFVGRQLLFK 167

Query:   645 TGGRISVSDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFN 704
                 +  ++    +V  +R+++E+   +    +   ++ G    G VT +  +GAFV+  
Sbjct:   168 V---VEFAERGRNIVLSHRAILEEEERQKREALKDTLKEGTTLTGTVTRLMPFGAFVDI- 223

Query:   705 GGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGN-IKLSLKAVSPRP-EADV 762
             GG +GL+ +SE     V  + DV+SVG+Q++      D   N I LSL+ V   P E   
Sbjct:   224 GGVEGLIPISEAGWSRVKEIGDVLSVGEQVTALVKRIDWENNKISLSLRDVQADPWEGIA 283

Query:   763 KGVVEGS 769
             +   EGS
Sbjct:   284 ERFPEGS 290


>TIGR_CMR|CPS_2335 [details] [associations]
            symbol:CPS_2335 "ribosomal protein S1" species:167879
            "Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
            of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
            [GO:0015935 "small ribosomal subunit" evidence=ISS]
            InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
            PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
            GO:GO:0003723 GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR
            GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
            HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
            TIGRFAMs:TIGR00717 RefSeq:YP_269055.1 ProteinModelPortal:Q482G3
            SMR:Q482G3 STRING:Q482G3 GeneID:3519189 KEGG:cps:CPS_2335
            PATRIC:21467761 BioCyc:CPSY167879:GI48-2400-MONOMER Uniprot:Q482G3
        Length = 553

 Score = 127 (49.8 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
 Identities = 31/104 (29%), Positives = 59/104 (56%)

Query:   658 VVAKNRSVMEKV--LEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
             VV   R+V+E     E+ + +    +  G   KG+V ++ +YGAFV+  GG  GLLH+++
Sbjct:   166 VVVSRRAVIEAEGSAERDELL--ESLAEGQEVKGIVKNLTDYGAFVDL-GGIDGLLHITD 222

Query:   716 LSHEPVSRVSDVVSVGQQLSLRCIGQD-VRGNIKLSLKAVSPRP 758
             ++ + V   S++V+VG ++ ++ +  D  R  + L +K +   P
Sbjct:   223 MAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSLGMKQLGEDP 266

 Score = 68 (29.0 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
 Identities = 18/57 (31%), Positives = 29/57 (50%)

Query:   905 AKNLKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFEN-----NEK--KDFVVGDEL 954
             AKN   G KV+ K+  +   G+ + L GGI G+    +      E+  +D+  GDE+
Sbjct:   358 AKNFNKGDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWAGGEEAVRDYKKGDEI 414

 Score = 44 (20.5 bits), Expect = 0.00048, Sum P(2) = 0.00048
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query:   909 KLGTKVAAKVYQVRARGLVLDLGGGIRGMYR 939
             K G  V  KV +V A+G  + L   + G  R
Sbjct:   448 KKGAIVTGKVTEVDAKGATILLAESVEGYLR 478


>TIGR_CMR|SO_2402 [details] [associations]
            symbol:SO_2402 "ribosomal protein S1" species:211586
            "Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
            ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
            InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
            PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
            GO:GO:0003723 GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR
            GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000044052
            KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299 TIGRFAMs:TIGR00717
            RefSeq:NP_717992.1 ProteinModelPortal:Q8EEI0 SMR:Q8EEI0
            GeneID:1170119 KEGG:son:SO_2402 PATRIC:23524423 Uniprot:Q8EEI0
        Length = 555

 Score = 142 (55.0 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
 Identities = 31/106 (29%), Positives = 60/106 (56%)

Query:   658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
             VV   R+V+E         +   ++ G   KG+V ++ +YGAFV+  GG  GLLH+++++
Sbjct:   166 VVVSRRAVIESESSAERDALLENLQEGQAVKGIVKNLTDYGAFVDL-GGVDGLLHITDMA 224

Query:   718 HEPVSRVSDVVSVGQQLSLRCIGQD-VRGNIKLSLKAVSPRPEADV 762
              + V   S++V+VG +++++ +  D  R  + L LK +   P  ++
Sbjct:   225 WKRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEI 270

 Score = 51 (23.0 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query:   911 GTKVAAKVYQVRARGLVLDLGGGIRGM 937
             G KV+ K+  +   G+ + L GGI G+
Sbjct:   364 GDKVSGKIKSITDFGIFIGLDGGIDGL 390

 Score = 45 (20.9 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
 Identities = 21/64 (32%), Positives = 31/64 (48%)

Query:   876 EREELAECLFGTEDGDEDNKGTRVEAIVSAKNLKLGTKVAAKVYQVRARGLVLDLGGGIR 935
             ERE ++  +  TED D  N      A ++ K  K GT V   V  V A+G+ ++L   + 
Sbjct:   425 ERERISLGVKQTED-DPFN------AYLADK--KKGTIVHGTVSAVDAKGVTVELADTVE 475

Query:   936 GMYR 939
             G  R
Sbjct:   476 GYIR 479


>SGD|S000003427 [details] [associations]
            symbol:SKI6 "Exosome non-catalytic core component"
            species:4932 "Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0070481 "nuclear-transcribed mRNA catabolic
            process, non-stop decay" evidence=IC] [GO:0071039 "nuclear
            polyadenylation-dependent CUT catabolic process" evidence=IMP]
            [GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
            process" evidence=IDA] [GO:0016075 "rRNA catabolic process"
            evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006364
            "rRNA processing" evidence=IEA] [GO:0000467 "exonucleolytic
            trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
            rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
            [GO:0034475 "U4 snRNA 3'-end processing" evidence=IGI;IMP]
            [GO:0034427 "nuclear-transcribed mRNA catabolic process,
            exonucleolytic, 3'-5'" evidence=IMP] [GO:0070478
            "nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
            nonsense-mediated decay" evidence=IGI;IMP] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0071051 "polyadenylation-dependent snoRNA 3'-end
            processing" evidence=IMP] [GO:0071028 "nuclear mRNA surveillance"
            evidence=IGI;IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0000178
            "exosome (RNase complex)" evidence=IEA] [GO:0003674
            "molecular_function" evidence=ND] [GO:0071042 "nuclear
            polyadenylation-dependent mRNA catabolic process" evidence=IC]
            [GO:0034473 "U1 snRNA 3'-end processing" evidence=IGI;IMP]
            [GO:0034476 "U5 snRNA 3'-end processing" evidence=IGI;IMP]
            [GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=IDA]
            [GO:0000176 "nuclear exosome (RNase complex)" evidence=IDA]
            [GO:0070651 "nonfunctional rRNA decay" evidence=IC]
            InterPro:IPR001247 SGD:S000003427 InterPro:IPR015847 Pfam:PF01138
            GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0071039
            GO:GO:0071038 InterPro:IPR020568 SUPFAM:SSF54211 RefSeq:NP_011711.3
            GeneID:853109 KEGG:sce:YGR195W KO:K11600 GO:GO:0000176
            GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 GO:GO:0071042
            GO:GO:0070478 GO:GO:0070481 GO:GO:0071051 KO:K03233 eggNOG:COG0689
            GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515 OMA:DVFIEVL
            GO:GO:0071028 Pfam:PF03725 SUPFAM:SSF55666 EMBL:X82775 EMBL:Z72981
            GO:GO:0034475 GO:GO:0034476 GO:GO:0034473 OrthoDB:EOG45MRFG
            EMBL:Z72980 EMBL:AY558509 PIR:S59180 RefSeq:NP_011717.4 PDB:2WP8
            PDBsum:2WP8 ProteinModelPortal:P46948 SMR:P46948 DIP:DIP-2083N
            IntAct:P46948 MINT:MINT-555587 STRING:P46948 PaxDb:P46948
            EnsemblFungi:YGR195W GeneID:853115 KEGG:sce:YGR201C CYGD:YGR195w
            EvolutionaryTrace:P46948 NextBio:973121 Genevestigator:P46948
            GermOnline:YGR195W Uniprot:P46948
        Length = 246

 Score = 137 (53.3 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 64/235 (27%), Positives = 111/235 (47%)

Query:   367 EGVRVDGRQLDEVRPIYCESGNLP-ILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVG 425
             EG+R+DGR+ +E+R         P    GSS   +G+ +++ T+  G P E  RL+S + 
Sbjct:    10 EGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKII-TLVKG-PKEP-RLKSQMD 66

Query:   426 PPTKRFMLHYS--FPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV-RV 482
               T + +L+ S     F   E  K    N R V     +   +       N +P TV  +
Sbjct:    67 --TSKALLNVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDI 124

Query:   483 NSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDP--STGEIKDYRIL 540
                V+  DG    + + G ++AL+DAGI + ++++G+SVGL  +  P   T  +++  + 
Sbjct:   125 EIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGISVGLY-DTTPLLDTNSLEENAMS 183

Query:   541 TDILGLEDHLGDMDFKIAGTRIGVTAIQ--LDIKPAGIPL--DIICECL-EHAHK 590
             T  LG+      +   +   +I +  ++  L I  AG     D++ E L +HA K
Sbjct:   184 TVTLGVVGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRVRDLMDEELRKHAQK 238


>UNIPROTKB|P0AG67 [details] [associations]
            symbol:rpsA "30S ribosomal subunit protein S1"
            species:83333 "Escherichia coli K-12" [GO:2000766 "negative
            regulation of cytoplasmic translation" evidence=IEP;IDA]
            [GO:0003729 "mRNA binding" evidence=IDA] [GO:0016020 "membrane"
            evidence=IDA] [GO:0022627 "cytosolic small ribosomal subunit"
            evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0006412
            "translation" evidence=IMP] [GO:0003735 "structural constituent of
            ribosome" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
            PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0016020
            EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
            GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0003729 GO:GO:0003735
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR022967 SMART:SM00316 PDB:2BH8 PDBsum:2BH8 GO:GO:0022627
            GO:GO:2000766 EMBL:X04864 EMBL:X00785 EMBL:V00352 eggNOG:COG0539
            HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
            TIGRFAMs:TIGR00717 EMBL:V00342 PIR:F64830 RefSeq:NP_415431.1
            RefSeq:YP_489183.1 PDB:2KHI PDB:2KHJ PDBsum:2KHI PDBsum:2KHJ
            ProteinModelPortal:P0AG67 SMR:P0AG67 DIP:DIP-35884N IntAct:P0AG67
            MINT:MINT-1315122 PhosSite:P010447 SWISS-2DPAGE:P0AG67 PaxDb:P0AG67
            PRIDE:P0AG67 EnsemblBacteria:EBESCT00000004097
            EnsemblBacteria:EBESCT00000004098 EnsemblBacteria:EBESCT00000004099
            EnsemblBacteria:EBESCT00000017224 GeneID:12934066 GeneID:945536
            KEGG:ecj:Y75_p0883 KEGG:eco:b0911 PATRIC:32117035 EchoBASE:EB0893
            EcoGene:EG10900 BioCyc:EcoCyc:EG10900-MONOMER
            BioCyc:ECOL316407:JW0894-MONOMER EvolutionaryTrace:P0AG67
            Genevestigator:P0AG67 Uniprot:P0AG67
        Length = 557

 Score = 135 (52.6 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
 Identities = 35/114 (30%), Positives = 63/114 (55%)

Query:   658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
             VV   R+V+E         +   ++ G   KG+V ++ +YGAFV+  GG  GLLH+++++
Sbjct:   166 VVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMA 224

Query:   718 HEPVSRVSDVVSVGQQLSLRCIGQD-VRGNIKLSLKAVSPRP-EADVKGVVEGS 769
              + V   S++V+VG +++++ +  D  R  + L LK +   P  A  K   EG+
Sbjct:   225 WKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGT 278

 Score = 57 (25.1 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
 Identities = 22/63 (34%), Positives = 29/63 (46%)

Query:   909 KLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNEKKDFV--------VGDELLVKCSS 960
             K G  V  KV  V A+G  ++L  G+ G  R  +   +D V        VGDE+  K   
Sbjct:   449 KKGAIVTGKVTAVDAKGATVELADGVEGYLR-ASEASRDRVEDATLVLSVGDEVEAK--- 504

Query:   961 FTG 963
             FTG
Sbjct:   505 FTG 507

 Score = 46 (21.3 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query:   911 GTKVAAKVYQVRARGLVLDLGGGIRGM 937
             G +V  K+  +   G+ + L GGI G+
Sbjct:   364 GDRVEGKIKSITDFGIFIGLDGGIDGL 390

 Score = 44 (20.5 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query:   902 IVSAKNLKLGTKVAAKVYQVRARGLVLDLGGGIRGM 937
             +  AK    GTK+  +V  +   G  +++  G+ G+
Sbjct:   268 VAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGL 303

 Score = 38 (18.4 bits), Expect = 0.00029, Sum P(2) = 0.00029
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query:   904 SAKNLKLGTKVAAKVYQVRARGLVLDLG 931
             + +  K G ++AA V QV A    + LG
Sbjct:   405 AVREYKKGDEIAAVVLQVDAERERISLG 432


>ZFIN|ZDB-GENE-040426-1702 [details] [associations]
            symbol:exosc4 "exosome component 4" species:7955
            "Danio rerio" [GO:0004527 "exonuclease activity" evidence=IEA]
            InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
            ZFIN:ZDB-GENE-040426-1702 GO:GO:0004527 InterPro:IPR020568
            SUPFAM:SSF54211 KO:K11600 CTD:54512 HOGENOM:HOG000229515
            HOVERGEN:HBG051519 Pfam:PF03725 SUPFAM:SSF55666 EMBL:BC059525
            EMBL:BC153617 EMBL:AY576990 IPI:IPI00485513 RefSeq:NP_957033.1
            UniGene:Dr.107456 SMR:Q6PBZ8 DNASU:393712 GeneID:393712
            KEGG:dre:393712 InParanoid:Q6PBZ8 NextBio:20814714 Uniprot:Q6PBZ8
        Length = 245

 Score = 136 (52.9 bits), Expect = 3.7e-06, P = 3.7e-06
 Identities = 63/242 (26%), Positives = 103/242 (42%)

Query:   367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
             +G R+DGR+  E+R +           GS+   +G+T+ L  V         R +SL   
Sbjct:    10 QGYRLDGRKATELRKVQARMSVFAQADGSAYLEQGNTKALAVVYGPHEIRGSRSKSLHDR 69

Query:   427 PTKRFMLHYSFPPFCINEVGKRVGLNRR--EVG-H-GTLAEKALLAVLPPENDFPYTVRV 482
                     YS   F   E  +R   +R+  E+  H     E A+L  L P +     V++
Sbjct:    70 AI--INCQYSMATFSTAERKRRPHGDRKSSEMSLHLKQTFEAAVLTELYPRSQIDIYVKI 127

Query:   483 NSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTD 542
                 + +DG    A V   ++AL+DAGIP++++V   S G V +  P          L D
Sbjct:   128 ----LQADGGNYSACVNAATLALVDAGIPMRDYVCACSAGFVEDT-P----------LAD 172

Query:   543 ILGLEDHLGDMDFKIAGT-RIG-VTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
             +   E+  G     +A   R G +  +Q+D +     LD + E    A K   ++LD + 
Sbjct:   173 LCHAEESGGGTALALALLPRSGNIALLQMDARLHQDHLDTLMEAAMTACKEFSKVLDSVV 232

Query:   601 RE 602
             R+
Sbjct:   233 RQ 234


>TIGR_CMR|CBU_0528 [details] [associations]
            symbol:CBU_0528 "ribosomal protein S1" species:227377
            "Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
            ribosome" evidence=ISS] InterPro:IPR000110 InterPro:IPR003029
            Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126
            GO:GO:0006412 GO:GO:0003723 GO:GO:0005840 EMBL:AE016828
            GenomeReviews:AE016828_GR GO:GO:0003735 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
            HSSP:P05055 eggNOG:COG0539 RefSeq:NP_819560.2
            ProteinModelPortal:Q83E09 SMR:Q83E09 PRIDE:Q83E09 GeneID:1208413
            KEGG:cbu:CBU_0528 PATRIC:17929757 HOGENOM:HOG000044052 KO:K02945
            OMA:QLGQDPW ProtClustDB:PRK06299 BioCyc:CBUR227377:GJ7S-531-MONOMER
            TIGRFAMs:TIGR00717 Uniprot:Q83E09
        Length = 551

 Score = 138 (53.6 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
 Identities = 36/119 (30%), Positives = 64/119 (53%)

Query:   658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
             VV   R+VME            E++ G   KGV+ ++ +YGAFV+  GG  GLLH+++++
Sbjct:   162 VVVSRRAVMEAETSAERQARLEELQEGQEIKGVIKNITDYGAFVDL-GGVDGLLHITDMA 220

Query:   718 HEPVSRVSDVVSVGQQLSLRCIGQDV-RGNIKLSLKAVSPRPEADVKGVVEGSVPVNKQ 775
                V   SD+++VG ++ ++ +  D  +  + L +K ++  P A +    E   PVN +
Sbjct:   221 WGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMKQLADDPWAKI----ERRYPVNSR 275

 Score = 53 (23.7 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
 Identities = 17/51 (33%), Positives = 26/51 (50%)

Query:   914 VAAKVYQVRARGLVLDLGGGIRGMYRFEN---NEKKDFV----VGDELLVK 957
             + AKV +V ++  VL+L   + G  R  +   +  KD      VGDE+ VK
Sbjct:   450 IQAKVKEVESKQAVLELADQVLGQMRLADYTYDRVKDLTQELNVGDEVAVK 500


>TIGR_CMR|BA_5132 [details] [associations]
            symbol:BA_5132 "general stress protein 13" species:198094
            "Bacillus anthracis str. Ames" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0006950 "response to stress" evidence=ISS]
            InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575 PRINTS:PR00681
            PROSITE:PS50126 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
            GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
            GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000217052
            KO:K07570 ProtClustDB:PRK08059 RefSeq:NP_847318.1
            RefSeq:YP_021786.1 RefSeq:YP_031013.1 ProteinModelPortal:Q81K73
            DNASU:1084499 EnsemblBacteria:EBBACT00000012496
            EnsemblBacteria:EBBACT00000016095 EnsemblBacteria:EBBACT00000023270
            GeneID:1084499 GeneID:2815743 GeneID:2848785 KEGG:ban:BA_5132
            KEGG:bar:GBAA_5132 KEGG:bat:BAS4770 OMA:ETPDHTE
            BioCyc:BANT260799:GJAJ-4848-MONOMER
            BioCyc:BANT261594:GJ7F-5009-MONOMER Uniprot:Q81K73
        Length = 114

 Score = 119 (46.9 bits), Expect = 4.1e-06, P = 4.1e-06
 Identities = 25/78 (32%), Positives = 44/78 (56%)

Query:   677 IGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSL 736
             +  +   G +  G VT +++YGAFV  +   QGL+H+SE+++  V  + D + VG  + +
Sbjct:     1 MSEQYTTGVVVTGKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEV 60

Query:   737 RCIGQDVRGN-IKLSLKA 753
             + +  D     + LSLKA
Sbjct:    61 KVLSIDEEHRKMSLSLKA 78


>TIGR_CMR|APH_0273 [details] [associations]
            symbol:APH_0273 "ribosomal protein S1" species:212042
            "Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
            of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
            [GO:0015935 "small ribosomal subunit" evidence=ISS]
            InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
            PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
            GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 EMBL:CP000235
            GenomeReviews:CP000235_GR Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 InterPro:IPR002792 PROSITE:PS50926
            InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
            HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
            RefSeq:YP_504887.1 ProteinModelPortal:Q2GL64 STRING:Q2GL64
            GeneID:3930767 KEGG:aph:APH_0273 PATRIC:20949120
            BioCyc:APHA212042:GHPM-305-MONOMER Uniprot:Q2GL64
        Length = 542

 Score = 143 (55.4 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
 Identities = 42/128 (32%), Positives = 70/128 (54%)

Query:   661 KNRSVM--EKVLEKVDFI-IGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
             +NR +    K LE+  +  +     VG I+KG VTS+++YG FVE   G +GL+HVSE+S
Sbjct:   272 ENRKISLGVKQLEESPWANVEERYPVGSIHKGTVTSIEDYGIFVELETGVEGLIHVSEVS 331

Query:   718 ----HEPVSRVSDVVSVGQQLSLRCIGQDVRGN-IKLSLKAVSPRP-EADVKGVVEGSVP 771
                 H PV+++      G+++ ++ +  D   N + LS+K     P EA ++    GS+ 
Sbjct:   332 WVRSHLPVNQL---FMRGEEIEVKVLSIDATKNRMSLSIKRCKENPWEAFIEKHPVGSI- 387

Query:   772 VNKQATDV 779
             VN +   +
Sbjct:   388 VNTKVKSI 395

 Score = 129 (50.5 bits), Expect = 0.00034, Sum P(3) = 0.00034
 Identities = 39/113 (34%), Positives = 59/113 (52%)

Query:   658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFN-----GGQQGLLH 712
             VV   ++V+E+ L          +E G I +G V S+ +YG F+E +     G   GLLH
Sbjct:   181 VVVSRKAVLEESLADAKDSFLSTLEEGSIVEGKVKSITKYGVFIEIHESPTVGVVDGLLH 240

Query:   713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSL--KAVSPRPEADVK 763
             ++++S   VS  S V S GQ +  + I  D R N K+SL  K +   P A+V+
Sbjct:   241 ITDISWSRVSHPSAVFSCGQTVRAKIIRID-RENRKISLGVKQLEESPWANVE 292

 Score = 45 (20.9 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query:   134 EGAPKERELLVGRIIDRPIRPL-FPAGFYHE-VQVMASVLSSDGKQDPDI 181
             +G P+E E++ G +I +    +   AG   E V  +      +GKQD ++
Sbjct:    30 DGGPREGEIIEGTVICKDSGYITVDAGLKSEGVVSLREFELGEGKQDIEV 79

 Score = 40 (19.1 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
 Identities = 14/43 (32%), Positives = 19/43 (44%)

Query:   889 DGDED-NKGTRVEAIVSAKNLKLGTKVAAKVYQVRARGLVLDL 930
             DG E  N     + I   K    G +V A+V  + +  LVL L
Sbjct:   499 DGSESFNVLVEQKHIPEGKKFFPGDRVEAEVLMIGSYSLVLSL 541

 Score = 37 (18.1 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query:   906 KNLKLGTKVAAKVYQVRARGLVLDLG 931
             K   +G  + AK+  V A    +DLG
Sbjct:   433 KRYNIGDCLQAKILMVSANRNKIDLG 458


>UNIPROTKB|Q0BZL2 [details] [associations]
            symbol:HNE_2386 "S1 RNA binding domain protein"
            species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR003029
            InterPro:IPR003583 InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126
            SMART:SM00278 SMART:SM00732 GO:GO:0003677 GO:GO:0006281
            GO:GO:0003723 GO:GO:0016788 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 EMBL:CP000158 GenomeReviews:CP000158_GR
            InterPro:IPR022967 SMART:SM00316 Gene3D:3.30.420.140 eggNOG:COG2183
            Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
            InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
            Gene3D:1.10.10.650 InterPro:IPR023319 HOGENOM:HOG000270497
            KO:K06959 RefSeq:YP_761081.1 ProteinModelPortal:Q0BZL2 SMR:Q0BZL2
            STRING:Q0BZL2 GeneID:4287336 KEGG:hne:HNE_2386 PATRIC:32217623
            ProtClustDB:CLSK2531628 BioCyc:HNEP228405:GI69-2408-MONOMER
            Uniprot:Q0BZL2
        Length = 771

 Score = 127 (49.8 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
 Identities = 31/80 (38%), Positives = 46/80 (57%)

Query:   680 EIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCI 739
             +++ G   +GVVT+V  +GAFV+    Q GL+H+SE+S   +    D V  GQ +S+  +
Sbjct:   656 DLKPGMRLEGVVTNVTAFGAFVDIGVHQDGLVHISEMSDTFIKDPHDAVKTGQVVSVTVM 715

Query:   740 GQDV-RGNIKLSLKAVSPRP 758
               DV R  I LS+K    RP
Sbjct:   716 EVDVARKRIGLSMKQGGKRP 735

 Score = 59 (25.8 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
 Identities = 34/143 (23%), Positives = 54/143 (37%)

Query:   286 YKLSMISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKK---ALEEECD- 341
             YK    ++ T+ K + L E   E +  +PS S F+  +A    G+ VK    ALE   D 
Sbjct:   117 YKQKRRTKATIAKEAGL-EPLAERLLANPSLSPFDEAKAFIASGKGVKDMDAALEGARDI 175

Query:   342 -EESLQVLPKAV----DTXXXXXXXXXXXAEGVRVDGRQLDEVRPIYCESGNLPILHGSS 396
               E +   P+ V    +T            +G   +G +  +          +P  H + 
Sbjct:   176 LVERIAETPRLVGKVRETVWKEGKLGSSLVKGKEQEGAKFSDYFDFDEPVTQMPS-HRAL 234

Query:   397 LFSRGDTQVLCTVTLGAPAEAQR 419
                RG  + +  V L  P E  R
Sbjct:   235 AVLRGQKEGVLKVKLAVPVEQGR 257

 Score = 46 (21.3 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query:   546 LEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIP--LD-IICECL 585
             L+D L ++  KI    IGV   Q D+  AG+   LD ++ +C+
Sbjct:   459 LQDPLAEL-VKIEPKAIGVGQYQHDVDQAGLARSLDGVVEDCV 500


>UNIPROTKB|Q9KQT3 [details] [associations]
            symbol:VC_1915 "30S ribosomal protein S1" species:243277
            "Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
            "structural constituent of ribosome" evidence=ISS] [GO:0006412
            "translation" evidence=ISS] InterPro:IPR000110 InterPro:IPR003029
            Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126
            GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723
            GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 HSSP:P05055
            KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299 TIGRFAMs:TIGR00717
            PIR:B82141 RefSeq:NP_231549.1 ProteinModelPortal:Q9KQT3 SMR:Q9KQT3
            DNASU:2613544 GeneID:2613544 KEGG:vch:VC1915 PATRIC:20082874
            Uniprot:Q9KQT3
        Length = 556

 Score = 133 (51.9 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
 Identities = 36/115 (31%), Positives = 65/115 (56%)

Query:   658 VVAKNRSVMEKV--LEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
             VV   R+V+E    +E+ + +    ++ G   KG+V ++ +YGAFV+  GG  GLLH+++
Sbjct:   166 VVVSRRAVIESESSVERDELL--ETLQEGTEVKGIVKNLTDYGAFVDL-GGVDGLLHITD 222

Query:   716 LSHEPVSRVSDVVSVGQQLSLRCIGQDV-RGNIKLSLKAVSPRP-EADVKGVVEG 768
             ++ + V   S++V+VG ++ ++ +  D  R  + L LK +   P  A  K   EG
Sbjct:   223 MAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWVAIAKRYPEG 277

 Score = 50 (22.7 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query:   911 GTKVAAKVYQVRARGLVLDLGGGIRGMYRFEN------NEK--KDFVVGDEL 954
             G KV  K+  +   G+ + L GGI G+    +       E+  ++F  GDE+
Sbjct:   364 GDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEI 415

 Score = 45 (20.9 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query:   909 KLGTKVAAKVYQVRARGLVLDLGGGIRGMYR 939
             K G  V   V  V A+G  ++L  G+ G  R
Sbjct:   449 KKGALVNGTVTAVDAKGATIELEDGVEGYIR 479


>TIGR_CMR|VC_1915 [details] [associations]
            symbol:VC_1915 "ribosomal protein S1" species:686 "Vibrio
            cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
            ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
            InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
            PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
            EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0005840
            GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR022967 SMART:SM00316 HSSP:P05055 KO:K02945 OMA:QLGQDPW
            ProtClustDB:PRK06299 TIGRFAMs:TIGR00717 PIR:B82141
            RefSeq:NP_231549.1 ProteinModelPortal:Q9KQT3 SMR:Q9KQT3
            DNASU:2613544 GeneID:2613544 KEGG:vch:VC1915 PATRIC:20082874
            Uniprot:Q9KQT3
        Length = 556

 Score = 133 (51.9 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
 Identities = 36/115 (31%), Positives = 65/115 (56%)

Query:   658 VVAKNRSVMEKV--LEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
             VV   R+V+E    +E+ + +    ++ G   KG+V ++ +YGAFV+  GG  GLLH+++
Sbjct:   166 VVVSRRAVIESESSVERDELL--ETLQEGTEVKGIVKNLTDYGAFVDL-GGVDGLLHITD 222

Query:   716 LSHEPVSRVSDVVSVGQQLSLRCIGQDV-RGNIKLSLKAVSPRP-EADVKGVVEG 768
             ++ + V   S++V+VG ++ ++ +  D  R  + L LK +   P  A  K   EG
Sbjct:   223 MAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWVAIAKRYPEG 277

 Score = 50 (22.7 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query:   911 GTKVAAKVYQVRARGLVLDLGGGIRGMYRFEN------NEK--KDFVVGDEL 954
             G KV  K+  +   G+ + L GGI G+    +       E+  ++F  GDE+
Sbjct:   364 GDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEI 415

 Score = 45 (20.9 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query:   909 KLGTKVAAKVYQVRARGLVLDLGGGIRGMYR 939
             K G  V   V  V A+G  ++L  G+ G  R
Sbjct:   449 KKGALVNGTVTAVDAKGATIELEDGVEGYIR 479


>WB|WBGene00003393 [details] [associations]
            symbol:mog-5 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
            evidence=IMP] [GO:0018996 "molting cycle, collagen and
            cuticulin-based cuticle" evidence=IMP] [GO:0002009 "morphogenesis
            of an epithelium" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
            [GO:0002119 "nematode larval development" evidence=IMP] [GO:0042127
            "regulation of cell proliferation" evidence=IMP] [GO:0040020
            "regulation of meiosis" evidence=IMP] [GO:0007281 "germ cell
            development" evidence=IMP] [GO:0006915 "apoptotic process"
            evidence=IMP] [GO:0048589 "developmental growth" evidence=IMP]
            [GO:0010172 "embryonic body morphogenesis" evidence=IMP]
            [GO:0040022 "feminization of hermaphroditic germ-line"
            evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR003029
            InterPro:IPR007502 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00575 Pfam:PF04408 PROSITE:PS00690 PROSITE:PS50126
            PROSITE:PS51194 SMART:SM00490 SMART:SM00847 GO:GO:0005524
            GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0006915
            GO:GO:0002119 GO:GO:0008380 GO:GO:0018996 GO:GO:0006397
            GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0007281
            GO:GO:0048589 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            GO:GO:0010172 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 eggNOG:COG1643 InterPro:IPR011709 Pfam:PF07717
            GO:GO:0040022 GO:GO:0008026 EMBL:FO081042 HOGENOM:HOG000175261
            InterPro:IPR022967 SMART:SM00316 GeneTree:ENSGT00700000104241
            KO:K12818 OMA:NAWCYEN EMBL:AF286899 PIR:T15921 RefSeq:NP_495019.1
            UniGene:Cel.7556 ProteinModelPortal:Q09530 SMR:Q09530
            DIP:DIP-25759N IntAct:Q09530 MINT:MINT-1046882 STRING:Q09530
            PaxDb:Q09530 EnsemblMetazoa:EEED8.5 GeneID:173920
            KEGG:cel:CELE_EEED8.5 UCSC:EEED8.5 CTD:173920 WormBase:EEED8.5
            InParanoid:Q09530 NextBio:881669 Uniprot:Q09530
        Length = 1200

 Score = 139 (54.0 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 40/123 (32%), Positives = 63/123 (51%)

Query:   682 EVGGIYKGVVTSVKEYGAFVEFNG---GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRC 738
             E+G IY G V S++ +GAF+   G    Q+GL+H+S++ +E V  V+DV+  G+ + ++ 
Sbjct:   232 EIGKIYDGRVNSIQSFGAFITLEGFRQKQEGLVHISQIRNERVQTVADVLKRGENVKVK- 290

Query:   739 IGQDVRGNIKLSLKAV--------SPRPEADVKGVVEGSVPVNKQA-TDVWASVGDVSNG 789
             + +   G I LS+K V        +PR E D+     G  P    A T  W +      G
Sbjct:   291 VNKIENGKISLSMKEVDQNSGEDLNPR-ETDLNPDAIGVRPRTPPASTSSWMNPEASGVG 349

Query:   790 QNP 792
             Q P
Sbjct:   350 QGP 352


>UNIPROTKB|Q09530 [details] [associations]
            symbol:mog-5 "Probable pre-mRNA-splicing factor
            ATP-dependent RNA helicase mog-5" species:6239 "Caenorhabditis
            elegans" [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR003029
            InterPro:IPR007502 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00575 Pfam:PF04408 PROSITE:PS00690 PROSITE:PS50126
            PROSITE:PS51194 SMART:SM00490 SMART:SM00847 GO:GO:0005524
            GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0006915
            GO:GO:0002119 GO:GO:0008380 GO:GO:0018996 GO:GO:0006397
            GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0007281
            GO:GO:0048589 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            GO:GO:0010172 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 eggNOG:COG1643 InterPro:IPR011709 Pfam:PF07717
            GO:GO:0040022 GO:GO:0008026 EMBL:FO081042 HOGENOM:HOG000175261
            InterPro:IPR022967 SMART:SM00316 GeneTree:ENSGT00700000104241
            KO:K12818 OMA:NAWCYEN EMBL:AF286899 PIR:T15921 RefSeq:NP_495019.1
            UniGene:Cel.7556 ProteinModelPortal:Q09530 SMR:Q09530
            DIP:DIP-25759N IntAct:Q09530 MINT:MINT-1046882 STRING:Q09530
            PaxDb:Q09530 EnsemblMetazoa:EEED8.5 GeneID:173920
            KEGG:cel:CELE_EEED8.5 UCSC:EEED8.5 CTD:173920 WormBase:EEED8.5
            InParanoid:Q09530 NextBio:881669 Uniprot:Q09530
        Length = 1200

 Score = 139 (54.0 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 40/123 (32%), Positives = 63/123 (51%)

Query:   682 EVGGIYKGVVTSVKEYGAFVEFNG---GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRC 738
             E+G IY G V S++ +GAF+   G    Q+GL+H+S++ +E V  V+DV+  G+ + ++ 
Sbjct:   232 EIGKIYDGRVNSIQSFGAFITLEGFRQKQEGLVHISQIRNERVQTVADVLKRGENVKVK- 290

Query:   739 IGQDVRGNIKLSLKAV--------SPRPEADVKGVVEGSVPVNKQA-TDVWASVGDVSNG 789
             + +   G I LS+K V        +PR E D+     G  P    A T  W +      G
Sbjct:   291 VNKIENGKISLSMKEVDQNSGEDLNPR-ETDLNPDAIGVRPRTPPASTSSWMNPEASGVG 349

Query:   790 QNP 792
             Q P
Sbjct:   350 QGP 352


>UNIPROTKB|P28619 [details] [associations]
            symbol:rph "Ribonuclease PH" species:224308 "Bacillus
            subtilis subsp. subtilis str. 168" [GO:0031125 "rRNA 3'-end
            processing" evidence=IMP] InterPro:IPR002381 InterPro:IPR001247
            InterPro:IPR015847 Pfam:PF01138 GO:GO:0008033 EMBL:AL009126
            GenomeReviews:AL009126_GR GO:GO:0000049 InterPro:IPR020568
            SUPFAM:SSF54211 GO:GO:0031125 EMBL:Z75208 eggNOG:COG0689
            Pfam:PF03725 SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277
            GO:GO:0004549 HOGENOM:HOG000229516 KO:K00989 OMA:MLPRATG
            ProtClustDB:PRK00173 GO:GO:0009022 HAMAP:MF_00564
            TIGRFAMs:TIGR01966 EMBL:M85163 PIR:A44914 RefSeq:NP_390715.1
            PDB:1OYP PDB:1OYR PDB:1OYS PDBsum:1OYP PDBsum:1OYR PDBsum:1OYS
            ProteinModelPortal:P28619 SMR:P28619
            EnsemblBacteria:EBBACT00000001457 GeneID:937463 KEGG:bsu:BSU28370
            PATRIC:18977558 GenoList:BSU28370 BioCyc:BSUB:BSU28370-MONOMER
            EvolutionaryTrace:P28619 Uniprot:P28619
        Length = 245

 Score = 128 (50.1 bits), Expect = 3.2e-05, P = 3.2e-05
 Identities = 67/251 (26%), Positives = 111/251 (44%)

Query:   369 VRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPT 428
             +R DGRQ DE+RPI  +   +    GS L + G+T+V+C     A  E +    L G   
Sbjct:     1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICN----ASVEDRVPPFLRGGGK 56

Query:   429 KRFMLHYSFPPFCINEVGKRVG----LNRREVGHGTLAEKALLAVLPPENDFPYTVRVNS 484
                   YS  P   N+   R      ++ R +    L  +AL AV+  E     T+ ++ 
Sbjct:    57 GWITAEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDC 116

Query:   485 EVMASDGSTSMATVCGGSMA-------LMDAGI----PLQEHVAGVSVGLVSEVDPSTGE 533
             +V+ +DG T  A++ G  +A       L+ AG     P+ + +A +SVG    +D   G 
Sbjct:   117 DVIQADGGTRTASITGAFLAMAIAIGKLIKAGTIKTNPITDFLAAISVG----IDKEQG- 171

Query:   534 IKDYRILTDILGLEDHLGDMDFKIAGTRIG-VTAIQLDIKPAGIPLDIICECLEHAHKGR 592
                  IL D+   ED   ++D  +  T  G    +Q   + A    + +   L  A KG 
Sbjct:   172 -----ILLDLNYEEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGI 226

Query:   593 LQILDHMEREI 603
              +++D  ++E+
Sbjct:   227 QELIDK-QKEV 236


>TAIR|locus:2119946 [details] [associations]
            symbol:emb2726 "embryo defective 2726" species:3702
            "Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0003746 "translation elongation factor activity"
            evidence=IEA;ISS] [GO:0006414 "translational elongation"
            evidence=IEA;ISS] [GO:0009793 "embryo development ending in seed
            dormancy" evidence=NAS] [GO:0009941 "chloroplast envelope"
            evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0046686
            "response to cadmium ion" evidence=IEP;RCA] [GO:0009570
            "chloroplast stroma" evidence=IDA] [GO:0009902 "chloroplast
            relocation" evidence=RCA] [GO:0010027 "thylakoid membrane
            organization" evidence=RCA] [GO:0016117 "carotenoid biosynthetic
            process" evidence=RCA] [GO:0019288 "isopentenyl diphosphate
            biosynthetic process, mevalonate-independent pathway" evidence=RCA]
            [GO:0034660 "ncRNA metabolic process" evidence=RCA] [GO:0042744
            "hydrogen peroxide catabolic process" evidence=RCA] HAMAP:MF_00050
            InterPro:IPR000449 InterPro:IPR001816 InterPro:IPR003029
            InterPro:IPR009060 InterPro:IPR014039 InterPro:IPR018101
            Pfam:PF00575 Pfam:PF00627 Pfam:PF00889 PROSITE:PS01126
            PROSITE:PS01127 PROSITE:PS50126 GO:GO:0046686 GO:GO:0009570
            EMBL:CP002687 EMBL:AL078470 EMBL:AL161574 GO:GO:0009941
            GO:GO:0003746 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            SUPFAM:SSF46934 InterPro:IPR022967 SMART:SM00316 KO:K02357
            Gene3D:3.30.479.20 PANTHER:PTHR11741 SUPFAM:SSF54713
            TIGRFAMs:TIGR00116 HSSP:P43895 EMBL:AY056792 IPI:IPI00541725
            PIR:T08961 RefSeq:NP_567820.1 UniGene:At.21764
            ProteinModelPortal:Q9SZD6 SMR:Q9SZD6 STRING:Q9SZD6 PRIDE:Q9SZD6
            ProMEX:Q9SZD6 EnsemblPlants:AT4G29060.1 GeneID:829027
            KEGG:ath:AT4G29060 TAIR:At4g29060 HOGENOM:HOG000244107
            InParanoid:Q9SZD6 OMA:DDLAMQV PhylomeDB:Q9SZD6
            Genevestigator:Q9SZD6 Uniprot:Q9SZD6
        Length = 953

 Score = 136 (52.9 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
 Identities = 29/86 (33%), Positives = 49/86 (56%)

Query:   680 EIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCI 739
             E+  G  + G V +++ +GAFV+F     GL+HVS+LS   V  VS VV++GQ++ +R +
Sbjct:   132 ELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLV 191

Query:   740 GQDVRGN-IKLSLKAVSPRPEADVKG 764
               D+    I L+++     P+    G
Sbjct:   192 EADIESKRISLTMRENDDPPKRQSGG 217

 Score = 52 (23.4 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
 Identities = 22/71 (30%), Positives = 34/71 (47%)

Query:   752 KAVSPRPEA-DVKGVVEGSVPVNKQATDVWASVGDVSNGQNPELPMRKNETPGVNSSTSS 810
             + V P PE    + +VE S+P N  ATD  +S   +++ +  E      ETP V+   + 
Sbjct:   439 EVVPPIPETKSEEEIVENSIPPNS-ATDEVSSPEALAS-EEVEKEQVVAETP-VDEVKTP 495

Query:   811 TPAVLIRSAAE 821
              P V   S+ E
Sbjct:   496 APVVTEASSEE 506


>ZFIN|ZDB-GENE-040325-2 [details] [associations]
            symbol:zcchc17 "zinc finger, CCHC domain containing
            17" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270
            "zinc ion binding" evidence=IEA] InterPro:IPR001878
            InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126 PROSITE:PS50158
            SMART:SM00343 ZFIN:ZDB-GENE-040325-2 GO:GO:0008270 GO:GO:0003723
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR022967 SMART:SM00316 CTD:51538 HOVERGEN:HBG080343
            EMBL:BC056336 IPI:IPI00505548 RefSeq:NP_956838.1 UniGene:Dr.78134
            ProteinModelPortal:Q7SZN1 SMR:Q7SZN1 GeneID:393516 KEGG:dre:393516
            InParanoid:Q7SZN1 NextBio:20814542 ArrayExpress:Q7SZN1
            Uniprot:Q7SZN1
        Length = 235

 Score = 126 (49.4 bits), Expect = 4.7e-05, P = 4.7e-05
 Identities = 29/67 (43%), Positives = 46/67 (68%)

Query:   686 IYKGVVTSVKEYGAFVEFNG-GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVR 744
             I KG V SV  YGAFV+  G  +QGL+H SE+S   V   +++V VG+Q+ ++ IG++++
Sbjct:    21 ILKGEVVSVTAYGAFVKIPGYRKQGLVHKSEMSACRVENPAEIVDVGEQVWIKVIGKEMK 80

Query:   745 GN-IKLS 750
              + +KLS
Sbjct:    81 DDKVKLS 87


>UNIPROTKB|F1N7K4 [details] [associations]
            symbol:F1N7K4 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR003029
            Pfam:PF00575 PROSITE:PS50126 PROSITE:PS50158 SMART:SM00343
            GO:GO:0008270 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 EMBL:DAAA02041831
            GeneTree:ENSGT00510000047363 IPI:IPI00908186
            ProteinModelPortal:F1N7K4 Ensembl:ENSBTAT00000001878 OMA:YCKVIST
            NextBio:20899911 Uniprot:F1N7K4
        Length = 237

 Score = 125 (49.1 bits), Expect = 6.2e-05, P = 6.2e-05
 Identities = 36/120 (30%), Positives = 66/120 (55%)

Query:   686 IYKGVVTSVKEYGAFVEFNG-GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVR 744
             I++G V  V +YGAF++  G  +QGL+H + +S   V + S++V VG ++ ++ IG++++
Sbjct:    18 IFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVCVKLIGREMK 77

Query:   745 GN---IKLSLKAVSPRPEADVKGVVEGSVPVNKQATDVWASVGDVSNGQNPELPMRKNET 801
              +   + LS+K V    +  VK +   +V + ++    W S  D + GQ   L    N T
Sbjct:    78 DDRIKVSLSMKVVD---QGTVKDLDPNNVIIEQEERRRW-SFQDYT-GQRITLEAVLNAT 132


>UNIPROTKB|Q6R2T1 [details] [associations]
            symbol:ZCCHC17 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270
            "zinc ion binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0022625 "cytosolic large ribosomal subunit"
            evidence=IEA] InterPro:IPR001878 InterPro:IPR003029 Pfam:PF00575
            PROSITE:PS50126 PROSITE:PS50158 SMART:SM00343 GO:GO:0005730
            GO:GO:0008270 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 GO:GO:0022625
            CTD:51538 eggNOG:COG1185 HOVERGEN:HBG080343 OrthoDB:EOG4Z62PQ
            OMA:MSASRVE GeneTree:ENSGT00510000047363 EMBL:AADN02051366
            EMBL:AY518184 IPI:IPI00578902 RefSeq:NP_996861.1 UniGene:Gga.9804
            SMR:Q6R2T1 Ensembl:ENSGALT00000000876 GeneID:404295 KEGG:gga:404295
            HOGENOM:HOG000208168 InParanoid:Q6R2T1 NextBio:20817640
            Uniprot:Q6R2T1
        Length = 239

 Score = 125 (49.1 bits), Expect = 6.4e-05, P = 6.4e-05
 Identities = 27/72 (37%), Positives = 50/72 (69%)

Query:   682 EVGGIYKGVVTSVKEYGAFVEFNG-GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIG 740
             E+  I++G V +V EYGAF++  G  +QGL+H + +S   + + S+VV VG ++ ++ IG
Sbjct:     6 ELYAIFQGEVAAVTEYGAFIKIPGCRKQGLVHKTHMSSCRIDKPSEVVDVGDKVWVKLIG 65

Query:   741 QDVRGN-IKLSL 751
             ++++ + +KLSL
Sbjct:    66 KEMKDDKLKLSL 77


>TIGR_CMR|SPO_0008 [details] [associations]
            symbol:SPO_0008 "ribonuclease PH" species:246200 "Ruegeria
            pomeroyi DSS-3" [GO:0004549 "tRNA-specific ribonuclease activity"
            evidence=ISS] [GO:0008033 "tRNA processing" evidence=ISS]
            InterPro:IPR002381 InterPro:IPR001247 InterPro:IPR015847
            Pfam:PF01138 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0008033
            GO:GO:0000049 InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
            Pfam:PF03725 SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277
            GO:GO:0004549 HOGENOM:HOG000229516 KO:K00989 OMA:MLPRATG
            ProtClustDB:PRK00173 GO:GO:0009022 HAMAP:MF_00564
            TIGRFAMs:TIGR01966 RefSeq:YP_165281.1 HSSP:P28619
            ProteinModelPortal:Q5LWF6 SMR:Q5LWF6 GeneID:3193125
            KEGG:sil:SPO0008 PATRIC:23373245 Uniprot:Q5LWF6
        Length = 237

 Score = 124 (48.7 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 51/171 (29%), Positives = 74/171 (43%)

Query:   369 VRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLV-GPP 427
             +R  GR L E+RP+  E+G      GS L   GDT VLCT T+       R+   + G  
Sbjct:     1 MRPSGRDLSEMRPVSIETGFTKHAEGSCLIKMGDTHVLCTATI-----EDRVPPFIKGSG 55

Query:   428 TKRFMLHYSFPPFCINEVGKRVGLNRREVGHGT----LAEKALLAVLPPENDFPYTVRVN 483
                    Y   P   N   +R   + ++ G       L  +AL A +         + V+
Sbjct:    56 LGWVTAEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVD 115

Query:   484 SEVMASDGSTSMATVCGGSMAL-------MDAGI----PLQEHVAGVSVGL 523
              +V+ +DG T  A++ GG +AL       M AG     PL + VA VS G+
Sbjct:   116 CDVIQADGGTRCASITGGWVALRLAVNKLMKAGDVISDPLVDPVAAVSCGI 166


>TIGR_CMR|NSE_0408 [details] [associations]
            symbol:NSE_0408 "ribosomal protein S1" species:222891
            "Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
            constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
            evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
            InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
            PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
            GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CP000237
            GenomeReviews:CP000237_GR InterPro:IPR022967 SMART:SM00316
            eggNOG:COG0539 HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW
            RefSeq:YP_506295.1 ProteinModelPortal:Q2GE01 STRING:Q2GE01
            GeneID:3932255 KEGG:nse:NSE_0408 PATRIC:22680873
            ProtClustDB:CLSK2527828 BioCyc:NSEN222891:GHFU-431-MONOMER
            Uniprot:Q2GE01
        Length = 553

 Score = 123 (48.4 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
 Identities = 34/97 (35%), Positives = 53/97 (54%)

Query:   681 IEVGGIYKGVVTSVKEYGAFVEFN-----GGQQGLLHVSELSHEPVSRVSDVVSVGQQLS 735
             I+ G I  G V S+  YG FV+ +     G   GLL+V+++S   V+  S + SVGQ++ 
Sbjct:   213 IKEGDIIDGRVKSIASYGVFVQIHESDKVGVVDGLLYVNDISWARVTHPSSIYSVGQEVR 272

Query:   736 LRCIGQDV-RGNIKLSLKAVSPRPEADV-KGVVEGSV 770
             ++ I  D  +G I L +K ++  P  DV K    G+V
Sbjct:   273 VKVIAVDPEKGRISLGVKQLTENPWKDVSKKYTPGNV 309

 Score = 114 (45.2 bits), Expect = 0.00088, Sum P(2) = 0.00088
 Identities = 27/83 (32%), Positives = 45/83 (54%)

Query:   677 IGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSL 736
             + ++   G +Y GVVTSV++YG FV    G +GL+H  E+S    +R   +     ++++
Sbjct:   300 VSKKYTPGNVYPGVVTSVEDYGIFVRLEEGVEGLVHSGEISW---TREKPLFLPNSKVNV 356

Query:   737 RCIGQDVRGN-IKLSLKAVSPRP 758
               +  D  G+ I LS+K  S  P
Sbjct:   357 MLLSVDEEGHKIALSVKQCSDNP 379

 Score = 55 (24.4 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
 Identities = 21/60 (35%), Positives = 29/60 (48%)

Query:   910 LGTKVAAKVYQVRARGLVLDL-GGG---IRGMYRFEN-----NEKKD---FVVGDELLVK 957
             LG  V  KV ++   G+VL L   G   +RG  R  N     N +K+   F +GDE+  K
Sbjct:   389 LGVVVKCKVVEITDSGIVLTLLDPGYSYVRGYVRLANISWSQNPRKELKRFTIGDEVEAK 448


>TIGR_CMR|CHY_0314 [details] [associations]
            symbol:CHY_0314 "ribonuclease PH" species:246194
            "Carboxydothermus hydrogenoformans Z-2901" [GO:0004549
            "tRNA-specific ribonuclease activity" evidence=ISS] [GO:0008033
            "tRNA processing" evidence=ISS] InterPro:IPR002381
            InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 EMBL:CP000141
            GenomeReviews:CP000141_GR GO:GO:0008033 GO:GO:0000049
            InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689 Pfam:PF03725
            SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277 HSSP:O29756
            GO:GO:0004549 HOGENOM:HOG000229516 KO:K00989 OMA:MLPRATG
            ProtClustDB:PRK00173 GO:GO:0009022 HAMAP:MF_00564
            TIGRFAMs:TIGR01966 RefSeq:YP_359184.1 ProteinModelPortal:Q3AFA0
            SMR:Q3AFA0 STRING:Q3AFA0 GeneID:3726312 KEGG:chy:CHY_0314
            PATRIC:21273799 BioCyc:CHYD246194:GJCN-315-MONOMER Uniprot:Q3AFA0
        Length = 254

 Score = 124 (48.7 bits), Expect = 0.00010, P = 0.00010
 Identities = 49/170 (28%), Positives = 81/170 (47%)

Query:   369 VRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPT 428
             +R+DGR+ D++R +   +  +    GS L   GDT+V+CT T+             G  T
Sbjct:     1 MRIDGREKDQLRTVKITTNYIKHAEGSVLIEMGDTRVVCTATVEDKVPPFAKGEGKGWIT 60

Query:   429 KRF-MLHYSFPPFCINEV--GKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSE 485
               + ML  S     + E   G++ G   R +    L  +AL  V+  +     T+ ++ +
Sbjct:    61 AEYGMLPRSTETRNVREATKGRQSG---RTLEIQRLIGRALRGVVDLKALGERTLWIDCD 117

Query:   486 VMASDGSTSMATVCGGSMAL-------MDAGI----PLQEHVAGVSVGLV 524
             V+ +DG T  A + G  +AL       ++ GI    PL++ VA VSVG+V
Sbjct:   118 VIQADGGTRTAAITGSFVALALALNKLVEEGILPVIPLKDFVAAVSVGIV 167


>UNIPROTKB|Q88AQ9 [details] [associations]
            symbol:PSPTO_0327 "S1 RNA binding domain protein"
            species:223283 "Pseudomonas syringae pv. tomato str. DC3000"
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR003029
            InterPro:IPR003583 InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126
            SMART:SM00278 SMART:SM00732 GO:GO:0003677 GO:GO:0006281
            GO:GO:0003723 GO:GO:0016788 EMBL:AE016853 GenomeReviews:AE016853_GR
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR022967 SMART:SM00316 HSSP:P05055 Gene3D:3.30.420.140
            eggNOG:COG2183 Gene3D:1.10.150.310 Gene3D:1.10.3500.10
            InterPro:IPR023323 InterPro:IPR023097 InterPro:IPR018974
            Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650 InterPro:IPR023319
            HOGENOM:HOG000270497 KO:K06959 RefSeq:NP_790177.1
            ProteinModelPortal:Q88AQ9 SMR:Q88AQ9 GeneID:1181936
            KEGG:pst:PSPTO_0327 PATRIC:19991830 ProtClustDB:CLSK2299216
            BioCyc:PSYR223283:GJIX-323-MONOMER Uniprot:Q88AQ9
        Length = 773

 Score = 142 (55.0 bits), Expect = 0.00013, Sum P(2) = 0.00013
 Identities = 50/165 (30%), Positives = 83/165 (50%)

Query:   616 RLATLKYDNDTLRRLIGPLGALKR----KIEEETGGRISVSDGTLTVVAKNRSVMEKVLE 671
             R+A  + D D +R LIG    LKR    K  +ET G  +V+D  L  + K         +
Sbjct:   576 RIAA-ETDRD-IRSLIGDASFLKRLDPKKFTDETFGLPTVTD-ILQELEKPGRDPRPEFK 632

Query:   672 KVDFIIG----REIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDV 727
               +F  G    ++++ G I +GVVT+V  +GAFV+    Q GL+H+S LS + +    + 
Sbjct:   633 TAEFQEGVEDLKDLQPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREA 692

Query:   728 VSVGQQLSLRCIGQDV-RGNIKLSLKAVSPRPEADVKGVVEGSVP 771
             V  G  + ++ +  D+ R  + LS++ +S  P   + G   G+ P
Sbjct:   693 VKAGDVVKVKVMEIDIPRKRVGLSMR-MSDTPGEKIDGA-RGARP 735

 Score = 38 (18.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query:   596 LDHMEREISAPRTQDDRNSPRLATLK 621
             L H+E  +   R  DDR    LA+++
Sbjct:    51 LRHLEERLRYLRELDDRRVSILASIE 76


>MGI|MGI:107889 [details] [associations]
            symbol:Exosc5 "exosome component 5" species:10090 "Mus
            musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
            [GO:0003674 "molecular_function" evidence=ND] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
            evidence=IEA] [GO:0006401 "RNA catabolic process" evidence=IMP]
            [GO:0035327 "transcriptionally active chromatin" evidence=ISO]
            [GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic
            process involved in deadenylation-dependent decay" evidence=ISO]
            [GO:0045006 "DNA deamination" evidence=ISO] [GO:0051607 "defense
            response to virus" evidence=ISO] InterPro:IPR001247
            InterPro:IPR015847 MGI:MGI:107889 Pfam:PF01138 GO:GO:0005737
            GO:GO:0005730 GO:GO:0051607 GO:GO:0003723 GO:GO:0006401
            GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327
            GO:GO:0006364 GO:GO:0043928 GO:GO:0045006 eggNOG:COG0689
            HOGENOM:HOG000229515 Pfam:PF03725 SUPFAM:SSF55666 CTD:56915
            HOVERGEN:HBG051520 KO:K12590 OMA:VRETCEA OrthoDB:EOG4PZJ7M
            EMBL:AK007372 EMBL:AK006475 EMBL:BC034358 IPI:IPI00133532
            RefSeq:NP_613052.1 UniGene:Mm.207484 UniGene:Mm.27853
            ProteinModelPortal:Q9CRA8 SMR:Q9CRA8 IntAct:Q9CRA8 STRING:Q9CRA8
            PhosphoSite:Q9CRA8 PaxDb:Q9CRA8 PRIDE:Q9CRA8
            Ensembl:ENSMUST00000079634 GeneID:27998 KEGG:mmu:27998
            UCSC:uc009fti.2 GeneTree:ENSGT00550000075002 InParanoid:Q9CRA8
            NextBio:306496 Bgee:Q9CRA8 CleanEx:MM_EXOSC5 Genevestigator:Q9CRA8
            GermOnline:ENSMUSG00000061286 Uniprot:Q9CRA8
        Length = 235

 Score = 122 (48.0 bits), Expect = 0.00013, P = 0.00013
 Identities = 49/168 (29%), Positives = 78/168 (46%)

Query:   379 VRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFP 438
             +R   CE   L    GS+ F +GDT VL  V    PAE +  + +    T   +L    P
Sbjct:    28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVY--GPAEVKVSKEIFNKATLEVILR---P 82

Query:   439 PFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATV 498
                +  V ++   +R  +   T  E  +L  L P      ++ V  +V++  GS     +
Sbjct:    83 KIGLPGVAEK---SRERLVRNT-CEAVVLGALHPRT----SITVVLQVVSDAGSLLACCL 134

Query:   499 CGGSMALMDAGIPLQEHVAGVSVGLVSE----VDPSTGEIKDYR-ILT 541
                 MAL+DAG+P++    GV+  L S+    +DP+T + K+ R ILT
Sbjct:   135 NAACMALVDAGVPMRALFCGVTCALDSDGNLVLDPTTKQEKEARAILT 182


>UNIPROTKB|P0CG19 [details] [associations]
            symbol:rph "RNase PH monomer" species:83333 "Escherichia
            coli K-12" [GO:0004549 "tRNA-specific ribonuclease activity"
            evidence=IEA] [GO:0000049 "tRNA binding" evidence=IEA] [GO:0004527
            "exonuclease activity" evidence=IDA] [GO:0042780 "tRNA 3'-end
            processing" evidence=IDA] [GO:0009022 "tRNA nucleotidyltransferase
            activity" evidence=IEA;IDA] [GO:0006399 "tRNA metabolic process"
            evidence=EXP] InterPro:IPR002381 InterPro:IPR001247
            InterPro:IPR015847 Pfam:PF01138 EMBL:U00096 EMBL:AP009048
            GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0004527
            EMBL:L10328 GO:GO:0000049 InterPro:IPR020568 SUPFAM:SSF54211
            EMBL:V01578 Pfam:PF03725 SUPFAM:SSF55666 InterPro:IPR018336
            PROSITE:PS01277 GO:GO:0042780 GO:GO:0004549 KO:K00989 GO:GO:0009022
            HAMAP:MF_00564 TIGRFAMs:TIGR01966 EMBL:X72920 PIR:A04470
            RefSeq:YP_001491547.1 ProteinModelPortal:P0CG19 SMR:P0CG19
            IntAct:P0CG19 EnsemblBacteria:EBESCT00000003143
            EnsemblBacteria:EBESCT00000018485 GeneID:948156 KEGG:eco:b3643
            PATRIC:32122773 EcoGene:EG10863 BioCyc:EcoCyc:EG10863-MONOMER
            BioCyc:MetaCyc:EG10863-MONOMER Uniprot:P0CG19
        Length = 228

 Score = 121 (47.7 bits), Expect = 0.00016, P = 0.00016
 Identities = 56/202 (27%), Positives = 90/202 (44%)

Query:   369 VRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL--GAPAEAQRLESLVGP 426
             +R  GR  ++VRP+           GS L   GDT+VLCT ++  G P   +      G 
Sbjct:     1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQ--GW 58

Query:   427 PTKRF-MLHYSFPPFCINEVGK-RVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNS 484
              T  + ML  S       E  K + G    E+    L  +AL A +  +    +T+ ++ 
Sbjct:    59 ITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQR--LIARALRAAVDLKALGEFTITLDC 116

Query:   485 EVMASDGSTSMATVCGGSMALMDAGIPLQEH---VAGVSVGLVSEVDPSTGEIKDYRILT 541
             +V+ +DG T  A++ G  +AL+DA   L E+         G+V+ V  S G I +   + 
Sbjct:   117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAV--SVG-IVNGEAVC 173

Query:   542 DILGLEDHLGDMDFKIAGTRIG 563
             D+  +ED   + D  +  T  G
Sbjct:   174 DLEYVEDSAAETDMNVVMTEDG 195


>UNIPROTKB|Q74GL1 [details] [associations]
            symbol:tex "S1 RNA-binding domain-containing
            transcriptional accessory protein" species:243231 "Geobacter
            sulfurreducens PCA" [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR003029 InterPro:IPR003583 InterPro:IPR006641
            Pfam:PF00575 PROSITE:PS50126 SMART:SM00278 SMART:SM00732
            GO:GO:0003677 GO:GO:0006281 GO:GO:0003723 EMBL:AE017180
            GenomeReviews:AE017180_GR GO:GO:0016788 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
            Gene3D:3.30.420.140 Gene3D:1.10.150.310 Gene3D:1.10.3500.10
            InterPro:IPR023323 InterPro:IPR023097 InterPro:IPR018974
            Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650 InterPro:IPR023319
            HOGENOM:HOG000270497 KO:K06959 RefSeq:NP_951296.1
            ProteinModelPortal:Q74GL1 SMR:Q74GL1 GeneID:2687602
            KEGG:gsu:GSU0235 PATRIC:22023214 ProtClustDB:CLSK2306712
            BioCyc:GSUL243231:GH27-222-MONOMER Uniprot:Q74GL1
        Length = 761

 Score = 134 (52.2 bits), Expect = 0.00016, Sum P(2) = 0.00016
 Identities = 32/81 (39%), Positives = 51/81 (62%)

Query:   677 IGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSL 736
             IG +++ G + +GVVT+V  +GAFV+    Q GL+HVS LS + V   ++ V VGQ + +
Sbjct:   644 IG-DLKEGMVLQGVVTNVTAFGAFVDVGVHQDGLVHVSHLSVKFVKDPAEAVRVGQVVQV 702

Query:   737 RCIGQDV-RGNIKLSLKAVSP 756
             + +  DV R  I LS++  +P
Sbjct:   703 KVLSVDVQRKRISLSIREAAP 723

 Score = 45 (20.9 bits), Expect = 0.00016, Sum P(2) = 0.00016
 Identities = 31/145 (21%), Positives = 54/145 (37%)

Query:   281 KQKKEYKLSMISEQTLEKVSNLAEAHI-------EAV--FTDPSYSKFERGEALDKIGQD 331
             K K+  K ++  E+ LE +++L  A         EA   F DP+    +   AL+  G  
Sbjct:   113 KPKRRTKATIARERGLEPLADLMAAQELTAGTPEEATLPFVDPAGEVPDAAAALEGAGHI 172

Query:   332 VKKALEEECDEESLQVLPKAVDTXXXXXXXXXXXAEGVRVDGRQLDEVRPIYCESGNLPI 391
             + + L ++ D  +  V     D               V       D   P+     ++P 
Sbjct:   173 LAERLADDADARAF-VRRLTADQGIFCSRVAADRKGAVTKFEMYYDHREPLK----SVPS 227

Query:   392 LHGSSLFSRGDTQVLCTVTLGAPAE 416
              H      RG+ + +  +T+ AP E
Sbjct:   228 -HRMLAMRRGEKEEVLVLTIEAPTE 251


>TIGR_CMR|GSU_0235 [details] [associations]
            symbol:GSU_0235 "S1 RNA binding domain protein"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0003723 "RNA
            binding" evidence=ISS] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR003029 InterPro:IPR003583
            InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00278
            SMART:SM00732 GO:GO:0003677 GO:GO:0006281 GO:GO:0003723
            EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0016788
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR022967 SMART:SM00316 Gene3D:3.30.420.140
            Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
            InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
            Gene3D:1.10.10.650 InterPro:IPR023319 HOGENOM:HOG000270497
            KO:K06959 RefSeq:NP_951296.1 ProteinModelPortal:Q74GL1 SMR:Q74GL1
            GeneID:2687602 KEGG:gsu:GSU0235 PATRIC:22023214
            ProtClustDB:CLSK2306712 BioCyc:GSUL243231:GH27-222-MONOMER
            Uniprot:Q74GL1
        Length = 761

 Score = 134 (52.2 bits), Expect = 0.00016, Sum P(2) = 0.00016
 Identities = 32/81 (39%), Positives = 51/81 (62%)

Query:   677 IGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSL 736
             IG +++ G + +GVVT+V  +GAFV+    Q GL+HVS LS + V   ++ V VGQ + +
Sbjct:   644 IG-DLKEGMVLQGVVTNVTAFGAFVDVGVHQDGLVHVSHLSVKFVKDPAEAVRVGQVVQV 702

Query:   737 RCIGQDV-RGNIKLSLKAVSP 756
             + +  DV R  I LS++  +P
Sbjct:   703 KVLSVDVQRKRISLSIREAAP 723

 Score = 45 (20.9 bits), Expect = 0.00016, Sum P(2) = 0.00016
 Identities = 31/145 (21%), Positives = 54/145 (37%)

Query:   281 KQKKEYKLSMISEQTLEKVSNLAEAHI-------EAV--FTDPSYSKFERGEALDKIGQD 331
             K K+  K ++  E+ LE +++L  A         EA   F DP+    +   AL+  G  
Sbjct:   113 KPKRRTKATIARERGLEPLADLMAAQELTAGTPEEATLPFVDPAGEVPDAAAALEGAGHI 172

Query:   332 VKKALEEECDEESLQVLPKAVDTXXXXXXXXXXXAEGVRVDGRQLDEVRPIYCESGNLPI 391
             + + L ++ D  +  V     D               V       D   P+     ++P 
Sbjct:   173 LAERLADDADARAF-VRRLTADQGIFCSRVAADRKGAVTKFEMYYDHREPLK----SVPS 227

Query:   392 LHGSSLFSRGDTQVLCTVTLGAPAE 416
              H      RG+ + +  +T+ AP E
Sbjct:   228 -HRMLAMRRGEKEEVLVLTIEAPTE 251


>TIGR_CMR|SPO_0802 [details] [associations]
            symbol:SPO_0802 "ribosomal protein S1" species:246200
            "Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
            ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
            InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
            PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 EMBL:CP000031
            GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
            GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR022967 SMART:SM00316 HOGENOM:HOG000044052 KO:K02945
            ProtClustDB:PRK06299 TIGRFAMs:TIGR00717 OMA:SRRYPQG
            RefSeq:YP_166055.1 ProteinModelPortal:Q5LVA0 SMR:Q5LVA0
            GeneID:3195039 KEGG:sil:SPO0802 PATRIC:23374881 Uniprot:Q5LVA0
        Length = 558

 Score = 128 (50.1 bits), Expect = 0.00017, P = 0.00017
 Identities = 32/104 (30%), Positives = 60/104 (57%)

Query:   658 VVAKNRSVMEKV-LEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
             +V   R+++E+   E+   +IG   E G    GVV ++ EYGAFV+  GG  GLLHV+++
Sbjct:   170 IVVSRRAILEESRAEQRAEVIGNLTE-GQTVDGVVKNITEYGAFVDL-GGVDGLLHVTDM 227

Query:   717 SHEPVSRVSDVVSVGQQLSLRCI--GQDVRGNIKLSLKAVSPRP 758
             +   V+  ++++++G+ + ++ I   +D    I L +K +   P
Sbjct:   228 AWRRVNHPNEILNIGETVKVQVIKINKDTH-RISLGMKQLQEDP 270

 Score = 125 (49.1 bits), Expect = 0.00036, P = 0.00036
 Identities = 38/127 (29%), Positives = 64/127 (50%)

Query:   666 MEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVS-RV 724
             M+++ E    ++G +  +  ++ G VT++ +YGAFVE   G +GL+HVSE+S    +   
Sbjct:   263 MKQLQEDPWDLVGAKYPLESVHTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHP 322

Query:   725 SDVVSVGQQLSLRCIGQD-VRGNIKLSLKAVSPRP-----EADVKG-VVEGSVPVNKQAT 777
               +VS  Q++ +  +  D  +  + L LK     P     E   +G VVEG V   K  T
Sbjct:   323 GKIVSTSQEVEVMVLEIDGAKRRVSLGLKQTMRNPWEVFAETHPEGTVVEGEV---KNIT 379

Query:   778 DVWASVG 784
             +    +G
Sbjct:   380 EFGLFIG 386


>UNIPROTKB|G4NFJ0 [details] [associations]
            symbol:MGG_08807 "Pre-mRNA-splicing factor ATP-dependent
            RNA helicase prp22" species:242507 "Magnaporthe oryzae 70-15"
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR001650
            InterPro:IPR002464 InterPro:IPR003029 InterPro:IPR003593
            InterPro:IPR007502 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00575 Pfam:PF04408 PROSITE:PS00690 PROSITE:PS50126
            PROSITE:PS51194 SMART:SM00382 SMART:SM00490 SMART:SM00847
            GO:GO:0005524 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 EMBL:CM001236 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 InterPro:IPR011709 Pfam:PF07717 GO:GO:0008026
            InterPro:IPR022967 SMART:SM00316 KO:K12818 RefSeq:XP_003719164.1
            ProteinModelPortal:G4NFJ0 EnsemblFungi:MGG_08807T0 GeneID:2678973
            KEGG:mgr:MGG_08807 Uniprot:G4NFJ0
        Length = 1207

 Score = 132 (51.5 bits), Expect = 0.00017, P = 0.00017
 Identities = 46/127 (36%), Positives = 66/127 (51%)

Query:   686 IYKGVVTSVKEYGAFVEFNG--GQ-QGLLHVSELSH-EPVSRVSDVVSVGQQLSLRCIGQ 741
             +Y G VT VK++GAFV  +G  G+  GL+HVS L+  + VS  SD V  GQ + ++ I  
Sbjct:   236 VYDGHVTGVKDFGAFVNLHGVKGKVDGLVHVSALTDGQRVSHPSDFVDKGQPVKVKVI-- 293

Query:   742 DVRGN-IKLSLKAVSPRPEADVKGVVEGSVPVNKQATDVWASVGDVSNG----QNPELPM 796
              + G+ I LS+K V  +   D+   V      N  A     S  ++SNG    + P+L  
Sbjct:   294 KIEGSRIGLSMKEVDQQTGEDLAPEVGFHSGANSMAL---GSRHNLSNGLLEDKAPDLSA 350

Query:   797 RKNETPG 803
              KN  PG
Sbjct:   351 IKNTLPG 357


>TIGR_CMR|ECH_0402 [details] [associations]
            symbol:ECH_0402 "putative ribosomal protein S1"
            species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003735
            "structural constituent of ribosome" evidence=ISS] [GO:0006412
            "translation" evidence=ISS] [GO:0015935 "small ribosomal subunit"
            evidence=ISS] InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
            PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 EMBL:CP000236
            GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
            GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
            HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
            RefSeq:YP_507222.1 ProteinModelPortal:Q2GH61 STRING:Q2GH61
            GeneID:3927480 KEGG:ech:ECH_0402 PATRIC:20576281
            BioCyc:ECHA205920:GJNR-403-MONOMER Uniprot:Q2GH61
        Length = 567

 Score = 136 (52.9 bits), Expect = 0.00019, Sum P(2) = 0.00019
 Identities = 34/101 (33%), Positives = 58/101 (57%)

Query:   661 KNRSVMEKVLEKVDFI-IGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
             K  S+  K LE+  +  I ++  V  I+KG+VTS++EYG FVE   G +GL+HVSE+S  
Sbjct:   298 KKISLGVKQLEESPWSNIEKKYPVDSIHKGIVTSIEEYGVFVELETGIEGLVHVSEVSWT 357

Query:   720 PVSR-VSDVVSVGQQLSLRCIGQDV-RGNIKLSLKAVSPRP 758
               S  ++ +   G+++ ++ +  D  +  + LS+K     P
Sbjct:   358 KNSLPINQLFMRGEEIQVKVLSIDTAKSRMSLSMKRCQDNP 398

 Score = 125 (49.1 bits), Expect = 0.00037, P = 0.00037
 Identities = 34/113 (30%), Positives = 60/113 (53%)

Query:   658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFN-----GGQQGLLH 712
             +V   ++++E+ L     +   ++  G I +G V S+ +YG F+E +     G   GLLH
Sbjct:   205 IVVSRKAILEESLADAKSLYLSQLNEGDIIEGKVKSITKYGVFIEIHESPSVGVVDGLLH 264

Query:   713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSL--KAVSPRPEADVK 763
             ++++S   VS  S V S GQ +  + I  D R N K+SL  K +   P ++++
Sbjct:   265 ITDISWSRVSHPSAVFSCGQTVKTKIIKID-RENKKISLGVKQLEESPWSNIE 316

 Score = 39 (18.8 bits), Expect = 0.00019, Sum P(2) = 0.00019
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query:   312 TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQV 347
             TD S+S+     A+   GQ VK  + +  D E+ ++
Sbjct:   266 TDISWSRVSHPSAVFSCGQTVKTKIIK-IDRENKKI 300


>TIGR_CMR|CJE_0972 [details] [associations]
            symbol:CJE_0972 "ribosomal protein S1" species:195099
            "Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
            of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
            InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
            PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
            GO:GO:0003723 GO:GO:0005840 EMBL:CP000025 GenomeReviews:CP000025_GR
            GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
            HOGENOM:HOG000044052 KO:K02945 ProtClustDB:PRK06299
            RefSeq:YP_178970.1 ProteinModelPortal:Q5HUR5 STRING:Q5HUR5
            GeneID:3231483 KEGG:cjr:CJE0972 PATRIC:20043727 OMA:SRRYPQG
            BioCyc:CJEJ195099:GJC0-992-MONOMER Uniprot:Q5HUR5
        Length = 556

 Score = 122 (48.0 bits), Expect = 0.00020, Sum P(2) = 0.00020
 Identities = 28/120 (23%), Positives = 59/120 (49%)

Query:   649 ISVSDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
             I +     +++   +  ++    K   +I    +   + +G+V  +  YG FV+  GG  
Sbjct:   168 IKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIVKKITTYGMFVDV-GGVD 226

Query:   709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDV-RGNIKLSLKAVSPRPEADVKGVVE 767
             GL+H SE+S++       +   G ++ ++ I  D  R ++ LS+KA  P P +++K  ++
Sbjct:   227 GLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIKAALPDPWSEIKDTLD 286

 Score = 114 (45.2 bits), Expect = 0.00019, Sum P(3) = 0.00019
 Identities = 28/100 (28%), Positives = 56/100 (56%)

Query:   681 IEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP-VSRVSDVVSVGQQLSLRCI 739
             ++VG   K +V++++ YGAFV+     +G LH+SE+S +  +    D ++ GQ++ +  I
Sbjct:   285 LDVGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDYINKGQEIDVEVI 344

Query:   740 GQDVRGN---IKLSLKAVSPRPEAD------VKGVVEGSV 770
               ++  N   +++SL+ +  RP  +      +  VVEG +
Sbjct:   345 --EINPNERRLRVSLRNLLSRPFDEFMKSYKIADVVEGEI 382

 Score = 53 (23.7 bits), Expect = 0.00019, Sum P(3) = 0.00019
 Identities = 20/59 (33%), Positives = 31/59 (52%)

Query:   906 KNLKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFEN-----NEK-KD-FVVGDELLVK 957
             K+ K+   V  ++  V + G  + LGG I G+   E+     N+K KD F  GD++ VK
Sbjct:   370 KSYKIADVVEGEITSVTSFGAFVKLGG-IEGLLHNEDASWDRNDKCKDKFSQGDKIKVK 427

 Score = 51 (23.0 bits), Expect = 0.00019, Sum P(3) = 0.00019
 Identities = 24/111 (21%), Positives = 55/111 (49%)

Query:   589 HKGRLQILDHMEREISAPRTQ---DDRNSP-----RLATLKYDNDTLRRLIGPLGALKRK 640
             +KG L ++D  + E   P++Q    + N+      ++  +K D D    ++    + K+ 
Sbjct:   129 NKGGLIVVDENDVEFFLPKSQYGFKETNNIIGKTFKVKIIKIDKDEQSIIV----SRKKT 184

Query:   641 IEEETGGRISVSDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVV 691
             +++E   R  + +     VA+   ++E +++K+    G  ++VGG+  G+V
Sbjct:   185 LDDERRKRKELINN----VAQQEDLIEGIVKKIT-TYGMFVDVGGV-DGLV 229


>UNIPROTKB|Q81VF3 [details] [associations]
            symbol:BA_0255 "S1 RNA binding domain protein" species:1392
            "Bacillus anthracis" [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR003029 InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126
            SMART:SM00732 EMBL:AE016879 EMBL:AE017334 GenomeReviews:AE016879_GR
            GenomeReviews:AE017334_GR GO:GO:0006139 GO:GO:0003723 GO:GO:0016788
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR022967 SMART:SM00316 HSSP:P05055 Gene3D:3.30.420.140
            Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
            InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371
            HOGENOM:HOG000270498 OMA:YKQKRRT Gene3D:1.10.10.650
            InterPro:IPR023319 KO:K06959 RefSeq:NP_842808.1 RefSeq:YP_016861.1
            ProteinModelPortal:Q81VF3 DNASU:1087362
            EnsemblBacteria:EBBACT00000008548 EnsemblBacteria:EBBACT00000016441
            GeneID:1087362 GeneID:2819520 KEGG:ban:BA_0255 KEGG:bar:GBAA_0255
            PATRIC:18778014 ProtClustDB:CLSK2391234
            BioCyc:BANT261594:GJ7F-271-MONOMER Uniprot:Q81VF3
        Length = 722

 Score = 128 (50.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
 Identities = 37/117 (31%), Positives = 61/117 (52%)

Query:   640 KIEEETG-GR---ISVSDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVK 695
             K+ EETG G    + + D  ++     R  + K L K   +   +++ G   +G   +V 
Sbjct:   602 KLSEETGIGEPTLVDIIDALISPERDMRDELPKPLLKKGILKLEDLKRGMELEGTARNVV 661

Query:   696 EYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVR-GNIKLSL 751
             ++GAFV+    Q GL+H+S+LS + V    DVVSVGQ + +     D + G + LS+
Sbjct:   662 DFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSM 718

 Score = 50 (22.7 bits), Expect = 0.00019, Sum P(2) = 0.00019
 Identities = 16/79 (20%), Positives = 42/79 (53%)

Query:   270 EPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIG 329
             E  +RL ++ GK   E +  ++    L++V +L   + E   T  + +K E+G  L+ + 
Sbjct:    75 EEVLRLIDEKGKLTGELRQQILKATKLQEVEDLYRPYKEKRRTKATIAK-EKG--LEPLA 131

Query:   330 QDVKKALEEECDEESLQVL 348
             + +    +E+ ++++++ +
Sbjct:   132 EWLLLYTKEDPNQKAMEFI 150


>TIGR_CMR|BA_0255 [details] [associations]
            symbol:BA_0255 "S1 RNA binding domain protein"
            species:198094 "Bacillus anthracis str. Ames" [GO:0003723 "RNA
            binding" evidence=ISS] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR003029 InterPro:IPR006641 Pfam:PF00575
            PROSITE:PS50126 SMART:SM00732 EMBL:AE016879 EMBL:AE017334
            GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR GO:GO:0006139
            GO:GO:0003723 GO:GO:0016788 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 HSSP:P05055
            Gene3D:3.30.420.140 Gene3D:1.10.150.310 Gene3D:1.10.3500.10
            InterPro:IPR023323 InterPro:IPR023097 InterPro:IPR018974
            Pfam:PF09371 HOGENOM:HOG000270498 OMA:YKQKRRT Gene3D:1.10.10.650
            InterPro:IPR023319 KO:K06959 RefSeq:NP_842808.1 RefSeq:YP_016861.1
            ProteinModelPortal:Q81VF3 DNASU:1087362
            EnsemblBacteria:EBBACT00000008548 EnsemblBacteria:EBBACT00000016441
            GeneID:1087362 GeneID:2819520 KEGG:ban:BA_0255 KEGG:bar:GBAA_0255
            PATRIC:18778014 ProtClustDB:CLSK2391234
            BioCyc:BANT261594:GJ7F-271-MONOMER Uniprot:Q81VF3
        Length = 722

 Score = 128 (50.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
 Identities = 37/117 (31%), Positives = 61/117 (52%)

Query:   640 KIEEETG-GR---ISVSDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVK 695
             K+ EETG G    + + D  ++     R  + K L K   +   +++ G   +G   +V 
Sbjct:   602 KLSEETGIGEPTLVDIIDALISPERDMRDELPKPLLKKGILKLEDLKRGMELEGTARNVV 661

Query:   696 EYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVR-GNIKLSL 751
             ++GAFV+    Q GL+H+S+LS + V    DVVSVGQ + +     D + G + LS+
Sbjct:   662 DFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSM 718

 Score = 50 (22.7 bits), Expect = 0.00019, Sum P(2) = 0.00019
 Identities = 16/79 (20%), Positives = 42/79 (53%)

Query:   270 EPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIG 329
             E  +RL ++ GK   E +  ++    L++V +L   + E   T  + +K E+G  L+ + 
Sbjct:    75 EEVLRLIDEKGKLTGELRQQILKATKLQEVEDLYRPYKEKRRTKATIAK-EKG--LEPLA 131

Query:   330 QDVKKALEEECDEESLQVL 348
             + +    +E+ ++++++ +
Sbjct:   132 EWLLLYTKEDPNQKAMEFI 150


>UNIPROTKB|E2R5A7 [details] [associations]
            symbol:E2R5A7 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126 GO:GO:0003723
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR022967 SMART:SM00316 EMBL:AAEX03009301
            Ensembl:ENSCAFT00000002937 GeneTree:ENSGT00510000047363 OMA:GERIWCK
            Uniprot:E2R5A7
        Length = 238

 Score = 119 (46.9 bits), Expect = 0.00031, P = 0.00031
 Identities = 25/74 (33%), Positives = 49/74 (66%)

Query:   686 IYKGVVTSVKEYGAFVEFNGGQ-QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVR 744
             I++G V  V +YGAF++  G + QGL+H + +S   V + S++V VG ++ ++ IG++++
Sbjct:    18 IFQGEVAMVTDYGAFIKIPGSRKQGLVHRTHMSSCRVDKSSEIVDVGDKVWVKLIGREMK 77

Query:   745 GN---IKLSLKAVS 755
              +   + LS+K V+
Sbjct:    78 NDRIKVSLSMKVVN 91


>UNIPROTKB|E1BAG2 [details] [associations]
            symbol:EXOSC5 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0051607 "defense response to virus" evidence=IEA]
            [GO:0045006 "DNA deamination" evidence=IEA] [GO:0043928
            "exonucleolytic nuclear-transcribed mRNA catabolic process involved
            in deadenylation-dependent decay" evidence=IEA] [GO:0035327
            "transcriptionally active chromatin" evidence=IEA] [GO:0000178
            "exosome (RNase complex)" evidence=IEA] InterPro:IPR001247
            InterPro:IPR015847 Pfam:PF01138 GO:GO:0051607 GO:GO:0000178
            InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0043928
            GO:GO:0045006 Pfam:PF03725 SUPFAM:SSF55666 OMA:VRETCEA
            GeneTree:ENSGT00550000075002 EMBL:DAAA02047109 IPI:IPI00710844
            Ensembl:ENSBTAT00000021338 Uniprot:E1BAG2
        Length = 235

 Score = 118 (46.6 bits), Expect = 0.00039, P = 0.00039
 Identities = 52/179 (29%), Positives = 81/179 (45%)

Query:   368 GVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPP 427
             G RV G  L   R   CE   L    GS+ F +GDT VL  V    PAE +  + +    
Sbjct:    20 GPRVPGCSL---RHFACEQNLLSRPDGSASFLQGDTSVLAGVY--GPAEVKISKEIFNKA 74

Query:   428 TKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVM 487
             T   +L    P   +  V ++   +R  +   T  E  +L  L P      ++ V  +V+
Sbjct:    75 TLEVILR---PKTGLPGVAEK---SRERLIRNT-CEAVVLGALHPRT----SITVVLQVV 123

Query:   488 ASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSE----VDPSTGEIKDYR-ILT 541
             +  GS     +    MAL+DAG+P++    GV+  L S+    +DP+  + K+ R +LT
Sbjct:   124 SDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGTLMLDPTAKQEKEARAVLT 182


>TIGR_CMR|CBU_0299 [details] [associations]
            symbol:CBU_0299 "ribonuclease PH" species:227377 "Coxiella
            burnetii RSA 493" [GO:0004540 "ribonuclease activity" evidence=ISS]
            [GO:0008033 "tRNA processing" evidence=ISS] InterPro:IPR002381
            InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 EMBL:AE016828
            GenomeReviews:AE016828_GR GO:GO:0008033 GO:GO:0000049
            InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689 Pfam:PF03725
            SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277 GO:GO:0004549
            HOGENOM:HOG000229516 KO:K00989 OMA:MLPRATG ProtClustDB:PRK00173
            GO:GO:0009022 HAMAP:MF_00564 TIGRFAMs:TIGR01966 RefSeq:NP_819342.2
            ProteinModelPortal:Q83EL9 SMR:Q83EL9 PRIDE:Q83EL9 GeneID:1208181
            KEGG:cbu:CBU_0299 PATRIC:17929293
            BioCyc:CBUR227377:GJ7S-306-MONOMER Uniprot:Q83EL9
        Length = 237

 Score = 118 (46.6 bits), Expect = 0.00040, P = 0.00040
 Identities = 61/213 (28%), Positives = 97/213 (45%)

Query:   369 VRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL--GAPAEAQRLESLVGP 426
             +R   R  +E+RP+   +       GS L + G+T+V+C  ++  G P   +  E   G 
Sbjct:     1 MRPSKRAANELRPLSFTTQFTRYAEGSVLVTLGNTKVICNASIVEGVPRFLKNSEQ--GW 58

Query:   427 PTKRF-MLHYSFPPFCINEV--GKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVN 483
              T  + ML  S       E   GK+ G   R V    L  ++L A L  +   PYT+ ++
Sbjct:    59 LTAEYGMLPRSTHSRMDREASRGKQGG---RTVEIQRLIGRSLRAALDLKLLGPYTITID 115

Query:   484 SEVMASDGSTSMATVCGGSMALMDA-------GI----PLQEHVAGVSVGLVSEVDP-ST 531
              +V+ +DG T  A + G  +A+++A       GI    PL+  VA VSVG+   V     
Sbjct:   116 CDVIQADGGTRTAAINGSCIAMIEALRHLQRKGILQTDPLKHKVAAVSVGIYKGVPVLDL 175

Query:   532 GEIKDYRILTDI-LGLEDHLGDMDFKIAGTRIG 563
                +D    TD+ + + D+  D   +I GT  G
Sbjct:   176 DYAEDSNAHTDMNVVMTDN--DAFIEIQGTAEG 206


>TAIR|locus:2075351 [details] [associations]
            symbol:AT3G46210 "AT3G46210" species:3702 "Arabidopsis
            thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
            evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
            evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
            [GO:0006626 "protein targeting to mitochondrion" evidence=RCA]
            [GO:0051604 "protein maturation" evidence=RCA] InterPro:IPR001247
            Pfam:PF01138 EMBL:CP002686 GenomeReviews:BA000014_GR
            InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
            HOGENOM:HOG000229515 KO:K12590 OMA:VRETCEA ProtClustDB:CLSN2684812
            EMBL:AL355775 EMBL:BT003125 EMBL:AK228171 EMBL:AK317261
            EMBL:AK317537 IPI:IPI00521571 PIR:T49262 RefSeq:NP_001030817.1
            RefSeq:NP_001030818.1 RefSeq:NP_001030819.1 RefSeq:NP_001078250.1
            RefSeq:NP_001190019.1 RefSeq:NP_190207.1 UniGene:At.43331
            ProteinModelPortal:Q9LX74 SMR:Q9LX74 IntAct:Q9LX74 STRING:Q9LX74
            PaxDb:Q9LX74 PRIDE:Q9LX74 EnsemblPlants:AT3G46210.1
            EnsemblPlants:AT3G46210.2 EnsemblPlants:AT3G46210.3
            EnsemblPlants:AT3G46210.4 EnsemblPlants:AT3G46210.5
            EnsemblPlants:AT3G46210.6 GeneID:823766 KEGG:ath:AT3G46210
            TAIR:At3g46210 InParanoid:Q9LX74 PhylomeDB:Q9LX74
            Genevestigator:Q9LX74 Uniprot:Q9LX74
        Length = 239

 Score = 118 (46.6 bits), Expect = 0.00041, P = 0.00041
 Identities = 45/148 (30%), Positives = 71/148 (47%)

Query:   370 RVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTK 429
             R DGR  +++RP+ C    L   HGS+ +S+GDT+VL  V  G  A  ++ E+      +
Sbjct:     5 REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAV-YGPKAGTKKNEN-----AE 58

Query:   430 RFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMAS 489
             +      + P    ++GK V      +   T+    +L V P  N    T  V  +V+  
Sbjct:    59 KACFEVIWKPKS-GQIGK-VEKEYEMILKRTIQSICVLTVNP--NT---TTSVIIQVVHD 111

Query:   490 DGSTSMATVCGGSMALMDAGIPLQEHVA 517
             DGS     +     AL+DAGIP++ H+A
Sbjct:   112 DGSLLPCAINAACAALVDAGIPMK-HLA 138


>RGD|1307861 [details] [associations]
            symbol:Exosc5 "exosome component 5" species:10116 "Rattus
            norvegicus" [GO:0000178 "exosome (RNase complex)" evidence=IEA;ISO]
            [GO:0006401 "RNA catabolic process" evidence=ISO] [GO:0035327
            "transcriptionally active chromatin" evidence=IEA;ISO] [GO:0043928
            "exonucleolytic nuclear-transcribed mRNA catabolic process involved
            in deadenylation-dependent decay" evidence=IEA;ISO] [GO:0045006
            "DNA deamination" evidence=IEA;ISO] [GO:0051607 "defense response
            to virus" evidence=IEA;ISO] [GO:0004532 "exoribonuclease activity"
            evidence=ISO] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
            RGD:1307861 GO:GO:0051607 GO:GO:0000178 InterPro:IPR020568
            SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0043928 GO:GO:0045006
            Pfam:PF03725 SUPFAM:SSF55666 CTD:56915 KO:K12590 OMA:VRETCEA
            GeneTree:ENSGT00550000075002 IPI:IPI00201730 RefSeq:NP_001100963.2
            UniGene:Rn.7400 Ensembl:ENSRNOT00000028026 GeneID:308441
            KEGG:rno:308441 UCSC:RGD:1307861 NextBio:658885 ArrayExpress:F1LSX7
            Uniprot:F1LSX7
        Length = 235

 Score = 117 (46.2 bits), Expect = 0.00051, P = 0.00051
 Identities = 48/168 (28%), Positives = 77/168 (45%)

Query:   379 VRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFP 438
             +R   CE   L    GS+ F +GDT VL  V    PAE +  + +    T   +L    P
Sbjct:    28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVY--GPAEVKVSKEIFNKATLEVILR---P 82

Query:   439 PFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATV 498
                +  V ++   +R  +   T  E  +L  L P      ++ V  +V++  GS     +
Sbjct:    83 KIGLPGVAEK---SRERLIRNT-CEAVVLGALHPRT----SITVVLQVVSDTGSLLACCL 134

Query:   499 CGGSMALMDAGIPLQEHVAGVSVGLVSE----VDPSTGEIKDYR-ILT 541
                 MAL+DAG+P++    GV+  L  +    +DP+T + K+ R ILT
Sbjct:   135 NAACMALVDAGVPMRALFCGVTCALDPDGNLVLDPTTKQEKEARAILT 182


>TIGR_CMR|CPS_0112 [details] [associations]
            symbol:CPS_0112 "ribonuclease PH" species:167879
            "Colwellia psychrerythraea 34H" [GO:0004549 "tRNA-specific
            ribonuclease activity" evidence=ISS] [GO:0042780 "tRNA 3'-end
            processing" evidence=ISS] InterPro:IPR002381 InterPro:IPR001247
            InterPro:IPR015847 Pfam:PF01138 EMBL:CP000083
            GenomeReviews:CP000083_GR GO:GO:0008033 GO:GO:0000049
            InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689 Pfam:PF03725
            SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277 HSSP:O29756
            GO:GO:0004549 HOGENOM:HOG000229516 KO:K00989 OMA:MLPRATG
            GO:GO:0009022 HAMAP:MF_00564 TIGRFAMs:TIGR01966 RefSeq:YP_266880.1
            ProteinModelPortal:Q48AN3 SMR:Q48AN3 STRING:Q48AN3 GeneID:3519509
            KEGG:cps:CPS_0112 PATRIC:21463641
            BioCyc:CPSY167879:GI48-215-MONOMER Uniprot:Q48AN3
        Length = 237

 Score = 117 (46.2 bits), Expect = 0.00052, P = 0.00052
 Identities = 68/253 (26%), Positives = 106/253 (41%)

Query:   369 VRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL--GAPAEAQRLESLVGP 426
             +R  GR L ++RP+           GS L   GDT+V+CT T+  G P   +      G 
Sbjct:     1 MRPSGRTLGQIRPVTITRQFTTHAEGSVLIEFGDTKVICTATVEVGVPRFLKGQGK--GW 58

Query:   427 PTKRF-MLHYSFPPFCINEV--GKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVN 483
              T  + ML  S       E   GK+ G   R +    L  +AL A +  +     T+ V+
Sbjct:    59 VTAEYGMLPRSTHTRMRREAASGKQSG---RTLEISRLIARALRAAVDLKALGENTISVD 115

Query:   484 SEVMASDGSTSMATVCGGSMALMDA-------GI----PLQEHVAGVSVGLVSEVDPSTG 532
              +V+ +DG T  A + G  +AL+DA        I    PL+  +A VSVG+    +P   
Sbjct:   116 CDVIQADGGTRTAAITGACVALVDALNYMRAKDIIKTNPLKHMIAAVSVGIYKG-EP-VA 173

Query:   533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIG-VTAIQLDIKPAGIPLDIICECLEHAHKG 591
             ++ DY         ED   D D  +  T  G +  +Q   +      + +   LE A  G
Sbjct:   174 DL-DYP--------EDSAADTDMNVVMTDTGKLIEVQGTAEEEPFSFEEMQAMLELAKNG 224

Query:   592 RLQILDHMEREIS 604
               ++ D  +  +S
Sbjct:   225 INELFDLQKAALS 237


>UNIPROTKB|Q84T68 [details] [associations]
            symbol:RRP46 "Exosome complex exonuclease RRP46 homolog"
            species:39947 "Oryza sativa Japonica Group" [GO:0003690
            "double-stranded DNA binding" evidence=IDA] [GO:0003727
            "single-stranded RNA binding" evidence=IDA] [GO:0004536
            "deoxyribonuclease activity" evidence=IDA] [GO:0004540
            "ribonuclease activity" evidence=IDA] [GO:0042802 "identical
            protein binding" evidence=IPI] InterPro:IPR001247
            InterPro:IPR015847 Pfam:PF01138 GO:GO:0005730 GO:GO:0003727
            EMBL:DP000009 EMBL:AP008209 GO:GO:0003690 GO:GO:0004527
            GO:GO:0000178 GO:GO:0004540 InterPro:IPR020568 SUPFAM:SSF54211
            GO:GO:0004536 GO:GO:0006364 eggNOG:COG0689 SUPFAM:SSF55666
            KO:K12590 EMBL:AC120506 EMBL:AK069107 RefSeq:NP_001051936.1
            UniGene:Os.47503 PDB:3HKM PDBsum:3HKM ProteinModelPortal:Q84T68
            STRING:Q84T68 EnsemblPlants:LOC_Os03g63720.1 GeneID:4334824
            KEGG:dosa:Os03t0854200-01 KEGG:osa:4334824 Gramene:Q84T68
            OMA:EKACIEV ProtClustDB:CLSN2684812 EvolutionaryTrace:Q84T68
            Uniprot:Q84T68
        Length = 238

 Score = 117 (46.2 bits), Expect = 0.00053, P = 0.00053
 Identities = 48/156 (30%), Positives = 72/156 (46%)

Query:   367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
             E  R DGR  +++RP  C    L   HGS+ +++GDT VL  V    P    R     G 
Sbjct:     2 EESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVY--GPKPGTRK----GE 55

Query:   427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEV 486
               ++  +   + P    ++GK+       +   TL    LL V P  N    T  V  +V
Sbjct:    56 NPEKASIEVVWKPMT-GQIGKQEKEYEMTLKR-TLQSICLLTVHP--NT---TTSVILQV 108

Query:   487 MASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVG 522
             + +DGS     +     AL+ AGIPL+ H+A V++G
Sbjct:   109 VGNDGSLLPCAINACCAALVFAGIPLK-HLA-VAIG 142


>UNIPROTKB|Q3T0H4 [details] [associations]
            symbol:ZCCHC17 "Zinc finger, CCHC domain containing 17"
            species:9913 "Bos taurus" [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR001878 InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126
            PROSITE:PS50158 SMART:SM00343 GO:GO:0008270 GO:GO:0003723
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR022967 SMART:SM00316 CTD:51538 eggNOG:COG1185
            HOGENOM:HOG000113809 HOVERGEN:HBG080343 OrthoDB:EOG4Z62PQ
            OMA:MSASRVE EMBL:DAAA02006263 GeneTree:ENSGT00510000047363
            EMBL:DAAA02006260 EMBL:DAAA02006261 EMBL:DAAA02006258
            EMBL:DAAA02006259 EMBL:DAAA02006262 EMBL:BC102395 EMBL:BT025465
            IPI:IPI00701421 RefSeq:NP_001029824.1 UniGene:Bt.2830 SMR:Q3T0H4
            Ensembl:ENSBTAT00000022373 GeneID:538816 KEGG:bta:538816
            InParanoid:Q3T0H4 NextBio:20877600 Uniprot:Q3T0H4
        Length = 241

 Score = 117 (46.2 bits), Expect = 0.00055, P = 0.00055
 Identities = 25/74 (33%), Positives = 49/74 (66%)

Query:   686 IYKGVVTSVKEYGAFVEFNG-GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVR 744
             I++G V  V +YGAF++  G  +QGL+H + +S   V + S++V VG ++ ++ IG++++
Sbjct:    18 IFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMK 77

Query:   745 GN---IKLSLKAVS 755
              +   + LS+K V+
Sbjct:    78 NDRIKVSLSMKVVN 91


>UNIPROTKB|F6XYB1 [details] [associations]
            symbol:ZCCHC17 "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR001878 InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126
            PROSITE:PS50158 SMART:SM00343 GO:GO:0008270 GO:GO:0003723
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR022967 SMART:SM00316 CTD:51538 OMA:MSASRVE
            Ensembl:ENSCAFT00000007577 EMBL:AAEX03001670
            GeneTree:ENSGT00510000047363 RefSeq:XP_535332.2
            ProteinModelPortal:F6XYB1 GeneID:478157 KEGG:cfa:478157
            Uniprot:F6XYB1
        Length = 241

 Score = 117 (46.2 bits), Expect = 0.00055, P = 0.00055
 Identities = 25/74 (33%), Positives = 49/74 (66%)

Query:   686 IYKGVVTSVKEYGAFVEFNG-GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVR 744
             I++G V  V +YGAF++  G  +QGL+H + +S   V + S++V VG ++ ++ IG++++
Sbjct:    18 IFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMK 77

Query:   745 GN---IKLSLKAVS 755
              +   + LS+K V+
Sbjct:    78 NDRIKVSLSMKVVN 91


>UNIPROTKB|Q9NP64 [details] [associations]
            symbol:ZCCHC17 "Nucleolar protein of 40 kDa" species:9606
            "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270
            "zinc ion binding" evidence=IEA] [GO:0022625 "cytosolic large
            ribosomal subunit" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] InterPro:IPR001878 InterPro:IPR003029 Pfam:PF00575
            PROSITE:PS50126 PROSITE:PS50158 SMART:SM00343 GO:GO:0005730
            GO:GO:0046872 EMBL:CH471059 GO:GO:0008270 GO:GO:0003723
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR022967 SMART:SM00316 EMBL:AL451070 GO:GO:0022625
            EMBL:AF247661 EMBL:AF151077 EMBL:AF151085 EMBL:AK001929
            EMBL:AK022506 EMBL:AK024049 EMBL:BC000685 EMBL:BC007446
            EMBL:BC050609 IPI:IPI00099810 IPI:IPI00383254 RefSeq:NP_057589.2
            UniGene:Hs.524094 PDB:2CQO PDBsum:2CQO ProteinModelPortal:Q9NP64
            SMR:Q9NP64 IntAct:Q9NP64 MINT:MINT-1447770 STRING:Q9NP64
            PhosphoSite:Q9NP64 DMDM:73921227 PaxDb:Q9NP64 PRIDE:Q9NP64
            DNASU:51538 Ensembl:ENST00000344147 Ensembl:ENST00000373714
            GeneID:51538 KEGG:hsa:51538 UCSC:uc001bsp.1 CTD:51538
            GeneCards:GC01P031769 HGNC:HGNC:30246 HPA:HPA028280
            neXtProt:NX_Q9NP64 PharmGKB:PA142670539 eggNOG:COG1185
            HOGENOM:HOG000113809 HOVERGEN:HBG080343 InParanoid:Q9NP64
            OrthoDB:EOG4Z62PQ PhylomeDB:Q9NP64 ChiTaRS:ZCCHC17
            EvolutionaryTrace:Q9NP64 GenomeRNAi:51538 NextBio:55305
            ArrayExpress:Q9NP64 Bgee:Q9NP64 CleanEx:HS_ZCCHC17
            Genevestigator:Q9NP64 GermOnline:ENSG00000121766 Uniprot:Q9NP64
        Length = 241

 Score = 117 (46.2 bits), Expect = 0.00055, P = 0.00055
 Identities = 25/74 (33%), Positives = 49/74 (66%)

Query:   686 IYKGVVTSVKEYGAFVEFNG-GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVR 744
             I++G V  V +YGAF++  G  +QGL+H + +S   V + S++V VG ++ ++ IG++++
Sbjct:    18 IFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMK 77

Query:   745 GN---IKLSLKAVS 755
              +   + LS+K V+
Sbjct:    78 NDRIKVSLSMKVVN 91


>MGI|MGI:1919955 [details] [associations]
            symbol:Zcchc17 "zinc finger, CCHC domain containing 17"
            species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=TAS] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0022625 "cytosolic
            large ribosomal subunit" evidence=IDA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0046872 "metal ion
            binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR003029
            Pfam:PF00575 PROSITE:PS50126 PROSITE:PS50158 SMART:SM00343
            MGI:MGI:1919955 GO:GO:0005730 GO:GO:0046872 GO:GO:0008270
            GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR022967 SMART:SM00316 GO:GO:0022625 CTD:51538
            eggNOG:COG1185 HOGENOM:HOG000113809 HOVERGEN:HBG080343
            ChiTaRS:ZCCHC17 EMBL:AJ272345 EMBL:AY253297 EMBL:BC018382
            EMBL:BC049231 IPI:IPI00113633 IPI:IPI00648047 RefSeq:NP_694800.1
            UniGene:Mm.297196 ProteinModelPortal:Q9ESX4 SMR:Q9ESX4 PRIDE:Q9ESX4
            Ensembl:ENSMUST00000167964 GeneID:619605 KEGG:mmu:619605
            InParanoid:Q9ESX4 OMA:MSASRVE NextBio:414767 Bgee:Q9ESX4
            CleanEx:MM_ZCCHC17 Genevestigator:Q9ESX4
            GermOnline:ENSMUSG00000028772 Uniprot:Q9ESX4
        Length = 241

 Score = 117 (46.2 bits), Expect = 0.00055, P = 0.00055
 Identities = 25/74 (33%), Positives = 49/74 (66%)

Query:   686 IYKGVVTSVKEYGAFVEFNG-GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVR 744
             I++G V  V +YGAF++  G  +QGL+H + +S   V + S++V VG ++ ++ IG++++
Sbjct:    18 IFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMK 77

Query:   745 GN---IKLSLKAVS 755
              +   + LS+K V+
Sbjct:    78 NDRIKVSLSMKVVN 91


>RGD|1565267 [details] [associations]
            symbol:Zcchc17 "zinc finger, CCHC domain containing 17"
            species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0008270
            "zinc ion binding" evidence=IEA] [GO:0022625 "cytosolic large
            ribosomal subunit" evidence=IEA;ISO] InterPro:IPR001878
            InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126 PROSITE:PS50158
            SMART:SM00343 RGD:1565267 GO:GO:0005730 GO:GO:0008270 GO:GO:0003723
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR022967 SMART:SM00316 EMBL:CH473968 GO:GO:0022625
            CTD:51538 OrthoDB:EOG4Z62PQ OMA:MSASRVE
            GeneTree:ENSGT00510000047363 IPI:IPI00190123 RefSeq:NP_001102737.1
            UniGene:Rn.63831 Ensembl:ENSRNOT00000017156 GeneID:500555
            KEGG:rno:500555 UCSC:RGD:1565267 NextBio:706546 Uniprot:D3ZCQ7
        Length = 241

 Score = 117 (46.2 bits), Expect = 0.00055, P = 0.00055
 Identities = 25/74 (33%), Positives = 49/74 (66%)

Query:   686 IYKGVVTSVKEYGAFVEFNG-GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVR 744
             I++G V  V +YGAF++  G  +QGL+H + +S   V + S++V VG ++ ++ IG++++
Sbjct:    18 IFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMK 77

Query:   745 GN---IKLSLKAVS 755
              +   + LS+K V+
Sbjct:    78 NDRIKVSLSMKVVN 91


>UNIPROTKB|E2R379 [details] [associations]
            symbol:E2R379 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001878
            InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126 PROSITE:PS50158
            SMART:SM00343 GO:GO:0008270 GO:GO:0003723 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 Gene3D:4.10.60.10
            InterPro:IPR022967 SMART:SM00316 Ensembl:ENSCAFT00000007577
            Uniprot:E2R379
        Length = 244

 Score = 117 (46.2 bits), Expect = 0.00057, P = 0.00057
 Identities = 25/74 (33%), Positives = 49/74 (66%)

Query:   686 IYKGVVTSVKEYGAFVEFNG-GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVR 744
             I++G V  V +YGAF++  G  +QGL+H + +S   V + S++V VG ++ ++ IG++++
Sbjct:    18 IFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMK 77

Query:   745 GN---IKLSLKAVS 755
              +   + LS+K V+
Sbjct:    78 NDRIKVSLSMKVVN 91


>UNIPROTKB|F5H658 [details] [associations]
            symbol:DHX8 "ATP-dependent RNA helicase DHX8" species:9606
            "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001650
            InterPro:IPR002464 InterPro:IPR003029 InterPro:IPR007502
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00575
            Pfam:PF04408 PROSITE:PS00690 PROSITE:PS50126 PROSITE:PS51194
            SMART:SM00490 SMART:SM00847 GO:GO:0005524 GO:GO:0005634
            GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR011709
            Pfam:PF07717 GO:GO:0008026 InterPro:IPR022967 SMART:SM00316
            HGNC:HGNC:2749 EMBL:AC068675 EMBL:AC087650 IPI:IPI01010550
            ProteinModelPortal:F5H658 SMR:F5H658 Ensembl:ENST00000540306
            UCSC:uc010wig.2 ArrayExpress:F5H658 Bgee:F5H658 Uniprot:F5H658
        Length = 1181

 Score = 127 (49.8 bits), Expect = 0.00057, P = 0.00057
 Identities = 32/87 (36%), Positives = 50/87 (57%)

Query:   680 EIEVGGIYKGVVTSVKEYGAFVEFNGGQ---QGLLHVSELSHEP-VSRVSDVVSVGQQLS 735
             E  +G IY G VTS+ ++G FV+  G +   +GL+H+SEL  E  V+ V+DVVS GQ++ 
Sbjct:   261 EPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVK 320

Query:   736 LRCIGQDVRGNIKLSLKAVSPRPEADV 762
             ++ +         LS+K V      D+
Sbjct:   321 VKVLSF-TGTKTSLSMKDVDQETGEDL 346


>RGD|1310723 [details] [associations]
            symbol:Dhx8 "DEAH (Asp-Glu-Ala-His) box polypeptide 8"
            species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISO] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR003029
            InterPro:IPR007502 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00575 Pfam:PF04408 PROSITE:PS00690 PROSITE:PS50126
            PROSITE:PS51194 SMART:SM00490 SMART:SM00847 RGD:1310723
            GO:GO:0005524 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            eggNOG:COG1643 InterPro:IPR011709 Pfam:PF07717 GO:GO:0008026
            HOGENOM:HOG000175261 InterPro:IPR022967 SMART:SM00316
            HOVERGEN:HBG039428 GeneTree:ENSGT00700000104241 KO:K12818 CTD:1659
            OrthoDB:EOG4D26P2 UniGene:Rn.108087 EMBL:AY383690 IPI:IPI00370026
            RefSeq:NP_001041309.1 SMR:Q6TXG4 Ensembl:ENSRNOT00000048140
            GeneID:287727 KEGG:rno:287727 UCSC:RGD:1310723 NextBio:626887
            Genevestigator:Q6TXG4 Uniprot:Q6TXG4
        Length = 1210

 Score = 127 (49.8 bits), Expect = 0.00059, P = 0.00059
 Identities = 32/87 (36%), Positives = 50/87 (57%)

Query:   680 EIEVGGIYKGVVTSVKEYGAFVEFNGGQ---QGLLHVSELSHEP-VSRVSDVVSVGQQLS 735
             E  +G IY G VTS+ ++G FV+  G +   +GL+H+SEL  E  V+ V+DVVS GQ++ 
Sbjct:   230 EPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVK 289

Query:   736 LRCIGQDVRGNIKLSLKAVSPRPEADV 762
             ++ +         LS+K V      D+
Sbjct:   290 VKVLSF-TGTKTSLSMKDVDQETGEDL 315


>UNIPROTKB|F1S1H3 [details] [associations]
            symbol:DHX8 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
            InterPro:IPR003029 InterPro:IPR007502 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00575 Pfam:PF04408 PROSITE:PS00690
            PROSITE:PS50126 PROSITE:PS51194 SMART:SM00490 SMART:SM00847
            GO:GO:0005524 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 InterPro:IPR011709 Pfam:PF07717 GO:GO:0008026
            InterPro:IPR022967 SMART:SM00316 GeneTree:ENSGT00700000104241
            KO:K12818 OMA:NAWCYEN CTD:1659 EMBL:FP102477 RefSeq:XP_003131427.2
            Ensembl:ENSSSCT00000018917 GeneID:100517118 KEGG:ssc:100517118
            Uniprot:F1S1H3
        Length = 1212

 Score = 127 (49.8 bits), Expect = 0.00059, P = 0.00059
 Identities = 32/87 (36%), Positives = 50/87 (57%)

Query:   680 EIEVGGIYKGVVTSVKEYGAFVEFNGGQ---QGLLHVSELSHEP-VSRVSDVVSVGQQLS 735
             E  +G IY G VTS+ ++G FV+  G +   +GL+H+SEL  E  V+ V+DVVS GQ++ 
Sbjct:   253 EPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVK 312

Query:   736 LRCIGQDVRGNIKLSLKAVSPRPEADV 762
             ++ +         LS+K V      D+
Sbjct:   313 VKVLSF-TGTKTSLSMKDVDQETGEDL 338


>UNIPROTKB|E2R9R9 [details] [associations]
            symbol:DHX8 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
            InterPro:IPR003029 InterPro:IPR007502 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00575 Pfam:PF04408 PROSITE:PS00690
            PROSITE:PS50126 PROSITE:PS51194 SMART:SM00490 SMART:SM00847
            GO:GO:0005524 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 InterPro:IPR011709 Pfam:PF07717 GO:GO:0008026
            InterPro:IPR022967 SMART:SM00316 GeneTree:ENSGT00700000104241
            KO:K12818 OMA:NAWCYEN CTD:1659 EMBL:AAEX03006434 EMBL:AAEX03006433
            RefSeq:XP_537627.2 ProteinModelPortal:E2R9R9
            Ensembl:ENSCAFT00000023129 GeneID:480507 KEGG:cfa:480507
            Uniprot:E2R9R9
        Length = 1216

 Score = 127 (49.8 bits), Expect = 0.00059, P = 0.00059
 Identities = 32/87 (36%), Positives = 50/87 (57%)

Query:   680 EIEVGGIYKGVVTSVKEYGAFVEFNGGQ---QGLLHVSELSHEP-VSRVSDVVSVGQQLS 735
             E  +G IY G VTS+ ++G FV+  G +   +GL+H+SEL  E  V+ V+DVVS GQ++ 
Sbjct:   257 EPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVK 316

Query:   736 LRCIGQDVRGNIKLSLKAVSPRPEADV 762
             ++ +         LS+K V      D+
Sbjct:   317 VKVLSF-TGTKTSLSMKDVDQETGEDL 342


>UNIPROTKB|Q14562 [details] [associations]
            symbol:DHX8 "ATP-dependent RNA helicase DHX8" species:9606
            "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0071013 "catalytic step 2
            spliceosome" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=TAS] [GO:0005681 "spliceosomal complex" evidence=TAS]
            [GO:0008380 "RNA splicing" evidence=TAS] [GO:0006396 "RNA
            processing" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001650
            InterPro:IPR002464 InterPro:IPR003029 InterPro:IPR007502
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00575
            Pfam:PF04408 PROSITE:PS00690 PROSITE:PS50126 PROSITE:PS51194
            SMART:SM00490 SMART:SM00847 EMBL:D50487 GO:GO:0005524 GO:GO:0003723
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000398
            GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            eggNOG:COG1643 InterPro:IPR011709 Pfam:PF07717 GO:GO:0004004
            HOGENOM:HOG000175261 InterPro:IPR022967 SMART:SM00316
            HOVERGEN:HBG039428 KO:K12818 OMA:NAWCYEN IPI:IPI00031508 PIR:A56236
            RefSeq:NP_004932.1 UniGene:Hs.463105 PDB:2EQS PDB:3I4U PDBsum:2EQS
            PDBsum:3I4U ProteinModelPortal:Q14562 SMR:Q14562 IntAct:Q14562
            STRING:Q14562 PhosphoSite:Q14562 DMDM:3023637 PaxDb:Q14562
            PeptideAtlas:Q14562 PRIDE:Q14562 Ensembl:ENST00000262415
            GeneID:1659 KEGG:hsa:1659 UCSC:uc002idu.1 CTD:1659
            GeneCards:GC17P041572 HGNC:HGNC:2749 HPA:HPA049285 MIM:600396
            neXtProt:NX_Q14562 PharmGKB:PA27231 InParanoid:Q14562
            OrthoDB:EOG4D26P2 PhylomeDB:Q14562 EvolutionaryTrace:Q14562
            GenomeRNAi:1659 NextBio:6828 ArrayExpress:Q14562 Bgee:Q14562
            CleanEx:HS_DHX8 Genevestigator:Q14562 GermOnline:ENSG00000067596
            Uniprot:Q14562
        Length = 1220

 Score = 127 (49.8 bits), Expect = 0.00060, P = 0.00060
 Identities = 32/87 (36%), Positives = 50/87 (57%)

Query:   680 EIEVGGIYKGVVTSVKEYGAFVEFNGGQ---QGLLHVSELSHEP-VSRVSDVVSVGQQLS 735
             E  +G IY G VTS+ ++G FV+  G +   +GL+H+SEL  E  V+ V+DVVS GQ++ 
Sbjct:   261 EPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVK 320

Query:   736 LRCIGQDVRGNIKLSLKAVSPRPEADV 762
             ++ +         LS+K V      D+
Sbjct:   321 VKVLSF-TGTKTSLSMKDVDQETGEDL 346


>UNIPROTKB|F1MEM4 [details] [associations]
            symbol:DHX8 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
            InterPro:IPR003029 InterPro:IPR007502 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00575 Pfam:PF04408 PROSITE:PS00690
            PROSITE:PS50126 PROSITE:PS51194 SMART:SM00490 SMART:SM00847
            GO:GO:0005524 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 InterPro:IPR011709 Pfam:PF07717 GO:GO:0008026
            InterPro:IPR022967 SMART:SM00316 GeneTree:ENSGT00700000104241
            OMA:NAWCYEN EMBL:DAAA02049231 EMBL:DAAA02049230 IPI:IPI00695401
            Ensembl:ENSBTAT00000010976 Uniprot:F1MEM4
        Length = 1230

 Score = 127 (49.8 bits), Expect = 0.00060, P = 0.00060
 Identities = 32/87 (36%), Positives = 50/87 (57%)

Query:   680 EIEVGGIYKGVVTSVKEYGAFVEFNGGQ---QGLLHVSELSHEP-VSRVSDVVSVGQQLS 735
             E  +G IY G VTS+ ++G FV+  G +   +GL+H+SEL  E  V+ V+DVVS GQ++ 
Sbjct:   271 EPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVK 330

Query:   736 LRCIGQDVRGNIKLSLKAVSPRPEADV 762
             ++ +         LS+K V      D+
Sbjct:   331 VKVLSF-TGTKTSLSMKDVDQETGEDL 356


>UNIPROTKB|D4A805 [details] [associations]
            symbol:Dhx8 "Protein Dhx8" species:10116 "Rattus
            norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
            InterPro:IPR003029 InterPro:IPR007502 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00575 Pfam:PF04408 PROSITE:PS00690
            PROSITE:PS50126 PROSITE:PS51194 SMART:SM00490 SMART:SM00847
            RGD:1310723 GO:GO:0005524 GO:GO:0003723 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CH473948 GO:GO:0071013
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR011709
            Pfam:PF07717 GO:GO:0008026 InterPro:IPR022967 SMART:SM00316
            OMA:NAWCYEN IPI:IPI00567810 UniGene:Rn.108087
            Ensembl:ENSRNOT00000028198 Uniprot:D4A805
        Length = 1242

 Score = 127 (49.8 bits), Expect = 0.00061, P = 0.00061
 Identities = 32/87 (36%), Positives = 50/87 (57%)

Query:   680 EIEVGGIYKGVVTSVKEYGAFVEFNGGQ---QGLLHVSELSHEP-VSRVSDVVSVGQQLS 735
             E  +G IY G VTS+ ++G FV+  G +   +GL+H+SEL  E  V+ V+DVVS GQ++ 
Sbjct:   283 EPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVK 342

Query:   736 LRCIGQDVRGNIKLSLKAVSPRPEADV 762
             ++ +         LS+K V      D+
Sbjct:   343 VKVLSF-TGTKTSLSMKDVDQETGEDL 368


>UNIPROTKB|Q9NQT4 [details] [associations]
            symbol:EXOSC5 "Exosome complex component RRP46"
            species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000175 "3'-5'-exoribonuclease activity" evidence=NAS]
            [GO:0006364 "rRNA processing" evidence=NAS] [GO:0005737 "cytoplasm"
            evidence=NAS] [GO:0005730 "nucleolus" evidence=NAS] [GO:0000178
            "exosome (RNase complex)" evidence=IDA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0043928 "exonucleolytic
            nuclear-transcribed mRNA catabolic process involved in
            deadenylation-dependent decay" evidence=IMP;TAS] [GO:0045006 "DNA
            deamination" evidence=IDA] [GO:0035327 "transcriptionally active
            chromatin" evidence=IMP] [GO:0004532 "exoribonuclease activity"
            evidence=IDA] [GO:0051607 "defense response to virus" evidence=IMP]
            [GO:0000288 "nuclear-transcribed mRNA catabolic process,
            deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
            evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
            [GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
            metabolic process" evidence=TAS] Reactome:REACT_71
            Reactome:REACT_21257 InterPro:IPR001247 InterPro:IPR015847
            Pfam:PF01138 GO:GO:0005829 GO:GO:0005730 GO:GO:0051607
            GO:GO:0003723 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
            GO:GO:0035327 EMBL:AC011462 GO:GO:0006364 GO:GO:0000175
            GO:GO:0043928 PDB:2NN6 PDBsum:2NN6 GO:GO:0045006 eggNOG:COG0689
            HOGENOM:HOG000229515 Pfam:PF03725 SUPFAM:SSF55666 EMBL:AF281134
            EMBL:AF285785 EMBL:BC007742 EMBL:BC107696 IPI:IPI00644775
            RefSeq:NP_064543.3 UniGene:Hs.283741 ProteinModelPortal:Q9NQT4
            SMR:Q9NQT4 DIP:DIP-29846N IntAct:Q9NQT4 MINT:MINT-1479651
            STRING:Q9NQT4 PhosphoSite:Q9NQT4 DMDM:14285757 PaxDb:Q9NQT4
            PRIDE:Q9NQT4 DNASU:56915 Ensembl:ENST00000221233 GeneID:56915
            KEGG:hsa:56915 UCSC:uc002oqo.3 CTD:56915 GeneCards:GC19M041892
            HGNC:HGNC:24662 MIM:606492 neXtProt:NX_Q9NQT4 PharmGKB:PA134890468
            HOVERGEN:HBG051520 InParanoid:Q9NQT4 KO:K12590 OMA:VRETCEA
            OrthoDB:EOG4PZJ7M PhylomeDB:Q9NQT4 EvolutionaryTrace:Q9NQT4
            GenomeRNAi:56915 NextBio:62403 Bgee:Q9NQT4 CleanEx:HS_EXOSC5
            Genevestigator:Q9NQT4 GermOnline:ENSG00000077348 Uniprot:Q9NQT4
        Length = 235

 Score = 116 (45.9 bits), Expect = 0.00066, P = 0.00066
 Identities = 47/168 (27%), Positives = 78/168 (46%)

Query:   379 VRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFP 438
             +R   CE   L    GS+ F +GDT VL  V    PAE +  + +    T   +L    P
Sbjct:    28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVY--GPAEVKVSKEIFNKATLEVILR---P 82

Query:   439 PFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATV 498
                +  V ++   +R  +   T  E  +L  L P      ++ V  +V++  GS     +
Sbjct:    83 KIGLPGVAEK---SRERLIRNT-CEAVVLGTLHPRT----SITVVLQVVSDAGSLLACCL 134

Query:   499 CGGSMALMDAGIPLQEHVAGVSVGLVSE----VDPSTGEIKDYR-ILT 541
                 MAL+DAG+P++    GV+  L S+    +DP++ + K+ R +LT
Sbjct:   135 NAACMALVDAGVPMRALFCGVACALDSDGTLVLDPTSKQEKEARAVLT 182


>TIGR_CMR|GSU_1795 [details] [associations]
            symbol:GSU_1795 "ribonuclease PH" species:243231
            "Geobacter sulfurreducens PCA" [GO:0004540 "ribonuclease activity"
            evidence=ISS] [GO:0008033 "tRNA processing" evidence=ISS]
            InterPro:IPR002381 InterPro:IPR001247 InterPro:IPR015847
            Pfam:PF01138 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008033
            GO:GO:0000049 InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
            Pfam:PF03725 SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277
            GO:GO:0004549 HOGENOM:HOG000229516 KO:K00989 OMA:MLPRATG
            ProtClustDB:PRK00173 GO:GO:0009022 HAMAP:MF_00564
            TIGRFAMs:TIGR01966 RefSeq:NP_952845.1 ProteinModelPortal:Q74C79
            SMR:Q74C79 GeneID:2686347 KEGG:gsu:GSU1795 PATRIC:22026445
            BioCyc:GSUL243231:GH27-1829-MONOMER Uniprot:Q74C79
        Length = 238

 Score = 116 (45.9 bits), Expect = 0.00068, P = 0.00068
 Identities = 60/208 (28%), Positives = 90/208 (43%)

Query:   369 VRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPT 428
             +R DGR    +R I      L    GS L   GDT+VLCT ++             G  T
Sbjct:     1 MRSDGRNPASLRNIRITRKYLKHAEGSVLVEFGDTKVLCTASVEESVPPFLRGKGGGWVT 60

Query:   429 KRF-MLHYSFPPFCINEVGK-RVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEV 486
               + ML  +       E  K ++G    E+    L  ++L AV         +V ++ +V
Sbjct:    61 AEYSMLPRATHTRSPREAAKGKLGGRTHEIQR--LIGRSLRAVTDLTLLGERSVLIDCDV 118

Query:   487 MASDGSTSMATVCGGSMALMDA-------G----IPLQEHVAGVSVGLVSEVDPSTGEIK 535
             + +DG T  A++ G  +AL+DA       G    +P++E VA VSVG+V       GE+ 
Sbjct:   119 LQADGGTRTASITGAYVALVDAFQWLVSQGTIATLPVREAVAAVSVGIVG------GEV- 171

Query:   536 DYRILTDILGLEDHLGDMDFKIAGTRIG 563
                 L D+  +ED   D+D     T  G
Sbjct:   172 ----LLDLNYIEDSRADVDMNFVMTSSG 195


>UNIPROTKB|Q9KNL6 [details] [associations]
            symbol:VC_2716 "Putative uncharacterized protein"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR003029 InterPro:IPR003583
            InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00278
            SMART:SM00732 GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
            GO:GO:0006281 GO:GO:0003723 GO:GO:0016788 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
            HSSP:P05055 Gene3D:3.30.420.140 Gene3D:1.10.150.310
            Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
            InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650
            InterPro:IPR023319 KO:K06959 PIR:E82042 RefSeq:NP_232343.1
            ProteinModelPortal:Q9KNL6 SMR:Q9KNL6 DNASU:2615544 GeneID:2615544
            KEGG:vch:VC2716 PATRIC:20084450 ProtClustDB:CLSK2298315
            Uniprot:Q9KNL6
        Length = 773

 Score = 124 (48.7 bits), Expect = 0.00072, P = 0.00072
 Identities = 29/83 (34%), Positives = 50/83 (60%)

Query:   680 EIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCI 739
             ++EVG + +GVV++V  +GAFV+    Q GL+H+S L+   +S   +VV  G  + ++ +
Sbjct:   647 DLEVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVM 706

Query:   740 GQDV-RGNIKLSLKAVSPRPEAD 761
               DV R  I LS++ ++  P  D
Sbjct:   707 EVDVQRKRIALSMR-LNDEPGQD 728


>TIGR_CMR|VC_2716 [details] [associations]
            symbol:VC_2716 "conserved hypothetical protein" species:686
            "Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR003029
            InterPro:IPR003583 InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126
            SMART:SM00278 SMART:SM00732 GO:GO:0003677 EMBL:AE003852
            GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0003723 GO:GO:0016788
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR022967 SMART:SM00316 HSSP:P05055 Gene3D:3.30.420.140
            Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
            InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
            Gene3D:1.10.10.650 InterPro:IPR023319 KO:K06959 PIR:E82042
            RefSeq:NP_232343.1 ProteinModelPortal:Q9KNL6 SMR:Q9KNL6
            DNASU:2615544 GeneID:2615544 KEGG:vch:VC2716 PATRIC:20084450
            ProtClustDB:CLSK2298315 Uniprot:Q9KNL6
        Length = 773

 Score = 124 (48.7 bits), Expect = 0.00072, P = 0.00072
 Identities = 29/83 (34%), Positives = 50/83 (60%)

Query:   680 EIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCI 739
             ++EVG + +GVV++V  +GAFV+    Q GL+H+S L+   +S   +VV  G  + ++ +
Sbjct:   647 DLEVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVM 706

Query:   740 GQDV-RGNIKLSLKAVSPRPEAD 761
               DV R  I LS++ ++  P  D
Sbjct:   707 EVDVQRKRIALSMR-LNDEPGQD 728


>UNIPROTKB|Q721R8 [details] [associations]
            symbol:LMOf2365_0917 "S1 RNA binding domain protein"
            species:265669 "Listeria monocytogenes serotype 4b str. F2365"
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR003029
            InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00732
            GO:GO:0006139 GO:GO:0003723 GO:GO:0016788 EMBL:AE017262
            GenomeReviews:AE017262_GR Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
            Gene3D:3.30.420.140 eggNOG:COG2183 Gene3D:1.10.150.310
            Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
            InterPro:IPR018974 Pfam:PF09371 HOGENOM:HOG000270498 OMA:YKQKRRT
            Gene3D:1.10.10.650 InterPro:IPR023319 KO:K06959 RefSeq:YP_013519.1
            ProteinModelPortal:Q721R8 STRING:Q721R8 GeneID:2798896
            KEGG:lmf:LMOf2365_0917 PATRIC:20323050 ProtClustDB:CLSK2391096
            Uniprot:Q721R8
        Length = 725

 Score = 128 (50.1 bits), Expect = 0.00078, Sum P(2) = 0.00078
 Identities = 35/124 (28%), Positives = 70/124 (56%)

Query:   636 ALKRKIEEETGGRISVSDGTLTVVAKNRSVMEKV---LEKVDFIIGREIEVGGIYKGVVT 692
             ++  + E+ + G+ ++ D    ++A  R + +++   L K D I   +++ G   +G V 
Sbjct:   598 SIPEEAEKLSIGKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVR 657

Query:   693 SVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
             +V ++GAFV+    Q GL+H+S+LS+  V    DVVSVG  +++     D + N +++L 
Sbjct:   658 NVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKKN-RIALT 716

Query:   753 AVSP 756
              ++P
Sbjct:   717 MLNP 720

 Score = 44 (20.5 bits), Expect = 0.00078, Sum P(2) = 0.00078
 Identities = 20/84 (23%), Positives = 39/84 (46%)

Query:   219 TMDELSLSDLNLVYACTREKTLMIDVQAREISEKD-LEAGLRLAHPEAVKYLEPQIRLAE 277
             ++DE+ + D+   +    +     +   R I E+  L   LR A  +A K+    +    
Sbjct:    49 SLDEVEIRDIEETFEYVTKLENRKEEIIRLIDEQGKLTDELRAAITKAEKH--QALEDLY 106

Query:   278 KAGKQKKEYKLSMISEQTLEKVSN 301
             +  KQKK  K ++  E+ LE +++
Sbjct:   107 RPYKQKKRTKATIAKEKGLEPLAD 130


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.134   0.376    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      974       912   0.00089  122 3  11 22  0.43    34
                                                     37  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  121
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  372 KB (2184 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  78.45u 0.19s 78.64t   Elapsed:  00:00:05
  Total cpu time:  78.48u 0.19s 78.67t   Elapsed:  00:00:05
  Start:  Fri May 10 08:11:46 2013   End:  Fri May 10 08:11:51 2013
WARNINGS ISSUED:  1
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data
